Query 013511
Match_columns 441
No_of_seqs 434 out of 2219
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 11:57:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2npi_A Protein CLP1; CLP1-PCF1 100.0 3.5E-58 1.2E-62 473.6 34.6 396 18-440 34-460 (460)
2 3fvq_A Fe(3+) IONS import ATP- 99.9 1.9E-30 6.6E-35 257.8 -8.9 188 98-309 3-224 (359)
3 3rlf_A Maltose/maltodextrin im 99.9 5.3E-30 1.8E-34 256.4 -7.0 183 98-308 2-218 (381)
4 3tui_C Methionine import ATP-b 99.9 2.8E-30 9.6E-35 256.8 -9.9 192 95-308 20-248 (366)
5 3gfo_A Cobalt import ATP-bindi 99.9 3.4E-30 1.2E-34 248.3 -11.5 188 97-308 5-228 (275)
6 1z47_A CYSA, putative ABC-tran 99.9 5.8E-29 2E-33 247.2 -6.6 184 97-308 12-230 (355)
7 1g29_1 MALK, maltose transport 99.9 7.9E-29 2.7E-33 248.3 -7.2 184 99-308 3-224 (372)
8 2it1_A 362AA long hypothetical 99.9 6.4E-29 2.2E-33 247.7 -8.4 182 99-308 3-218 (362)
9 2yyz_A Sugar ABC transporter, 99.9 5E-29 1.7E-33 248.2 -9.4 182 99-308 3-218 (359)
10 1v43_A Sugar-binding transport 99.9 7.8E-29 2.7E-33 248.0 -8.4 184 97-308 9-226 (372)
11 2olj_A Amino acid ABC transpor 99.9 4.4E-28 1.5E-32 232.2 -4.3 185 98-307 23-242 (263)
12 1vpl_A ABC transporter, ATP-bi 99.9 1.4E-28 4.9E-33 234.8 -8.1 185 96-307 12-229 (256)
13 1oxx_K GLCV, glucose, ABC tran 99.9 7E-29 2.4E-33 247.1 -10.7 184 99-308 3-225 (353)
14 3d31_A Sulfate/molybdate ABC t 99.9 1.1E-28 3.9E-33 244.8 -9.2 181 99-308 1-212 (348)
15 1b0u_A Histidine permease; ABC 99.9 9.7E-29 3.3E-33 237.0 -10.2 186 98-307 5-236 (262)
16 1ji0_A ABC transporter; ATP bi 99.9 2E-28 7E-33 231.8 -8.0 186 97-307 4-222 (240)
17 2pcj_A ABC transporter, lipopr 99.9 4E-28 1.4E-32 227.4 -6.0 184 98-306 3-221 (224)
18 1g6h_A High-affinity branched- 99.9 2.8E-28 9.5E-33 233.2 -7.3 186 97-307 5-236 (257)
19 4g1u_C Hemin import ATP-bindin 99.9 4E-29 1.4E-33 240.0 -13.7 199 97-322 9-245 (266)
20 3tif_A Uncharacterized ABC tra 99.9 9.8E-29 3.3E-33 233.3 -11.5 186 99-307 1-228 (235)
21 1mv5_A LMRA, multidrug resista 99.9 3.2E-27 1.1E-31 224.0 -3.1 183 99-308 1-221 (243)
22 3nh6_A ATP-binding cassette SU 99.9 5.3E-28 1.8E-32 236.1 -9.3 197 99-322 53-286 (306)
23 2onk_A Molybdate/tungstate ABC 99.9 7.9E-27 2.7E-31 220.7 -3.5 178 99-307 1-210 (240)
24 2ixe_A Antigen peptide transpo 99.9 6.9E-27 2.4E-31 225.1 -5.3 184 98-307 15-239 (271)
25 2ihy_A ABC transporter, ATP-bi 99.9 2.3E-27 7.8E-32 229.3 -10.9 187 97-307 19-246 (279)
26 2d2e_A SUFC protein; ABC-ATPas 99.9 3.5E-26 1.2E-30 217.8 -2.6 187 99-308 3-228 (250)
27 2pze_A Cystic fibrosis transme 99.9 2.5E-26 8.6E-31 215.9 -4.6 170 99-307 6-212 (229)
28 2ghi_A Transport protein; mult 99.9 2.1E-26 7.3E-31 220.4 -5.3 183 98-307 16-236 (260)
29 2pjz_A Hypothetical protein ST 99.9 3E-26 1E-30 219.5 -6.4 177 99-307 1-209 (263)
30 2yz2_A Putative ABC transporte 99.9 1.9E-26 6.5E-31 221.6 -7.9 183 99-307 2-221 (266)
31 2ff7_A Alpha-hemolysin translo 99.9 1.3E-26 4.3E-31 220.4 -9.5 181 101-307 9-226 (247)
32 2zu0_C Probable ATP-dependent 99.9 7.4E-26 2.5E-30 217.5 -4.3 190 93-307 14-248 (267)
33 3b5x_A Lipid A export ATP-bind 99.9 3.6E-25 1.2E-29 235.2 0.2 186 98-309 340-563 (582)
34 2cbz_A Multidrug resistance-as 99.9 4.2E-26 1.5E-30 215.4 -8.0 170 99-307 3-211 (237)
35 2nq2_C Hypothetical ABC transp 99.9 2.7E-25 9.2E-30 211.9 -3.1 169 99-307 4-211 (253)
36 2qi9_C Vitamin B12 import ATP- 99.9 1.2E-25 4.1E-30 213.7 -6.2 178 99-307 4-216 (249)
37 1sgw_A Putative ABC transporte 99.9 6.4E-26 2.2E-30 210.6 -9.1 166 99-293 10-205 (214)
38 3gd7_A Fusion complex of cysti 99.9 1.7E-26 5.8E-31 232.4 -14.1 185 98-309 18-238 (390)
39 4a82_A Cystic fibrosis transme 99.9 9.4E-26 3.2E-30 239.5 -11.4 199 99-323 339-574 (578)
40 3qf4_B Uncharacterized ABC tra 99.9 3.7E-25 1.3E-29 235.8 -8.5 185 99-310 354-575 (598)
41 3qf4_A ABC transporter, ATP-bi 99.9 7.5E-25 2.6E-29 232.8 -7.0 186 99-310 341-563 (587)
42 3b60_A Lipid A export ATP-bind 99.9 6.9E-25 2.4E-29 233.1 -8.4 186 98-309 340-563 (582)
43 2bbs_A Cystic fibrosis transme 99.9 1.5E-23 5.1E-28 203.4 0.4 168 97-308 38-242 (290)
44 2yl4_A ATP-binding cassette SU 99.9 3.6E-24 1.2E-28 228.1 -7.8 182 100-307 342-564 (595)
45 4f4c_A Multidrug resistance pr 99.8 1.5E-23 5.2E-28 240.7 -8.0 186 99-310 1076-1301(1321)
46 3g5u_A MCG1178, multidrug resi 99.8 1.1E-22 3.8E-27 233.0 -8.8 185 99-309 387-609 (1284)
47 3g5u_A MCG1178, multidrug resi 99.8 3.6E-22 1.2E-26 228.8 -5.0 185 99-309 1030-1254(1284)
48 4f4c_A Multidrug resistance pr 99.8 2.3E-22 7.7E-27 231.0 -8.8 184 99-308 415-636 (1321)
49 3bk7_A ABC transporter ATP-bin 99.8 2.4E-20 8.2E-25 198.0 1.5 173 97-307 355-557 (607)
50 3ozx_A RNAse L inhibitor; ATP 99.8 4.1E-21 1.4E-25 201.4 -5.6 162 98-295 268-460 (538)
51 1yqt_A RNAse L inhibitor; ATP- 99.8 9.6E-21 3.3E-25 198.9 -3.1 173 97-307 285-487 (538)
52 3bk7_A ABC transporter ATP-bin 99.7 7E-21 2.4E-25 202.2 -8.7 171 103-294 95-301 (607)
53 1yqt_A RNAse L inhibitor; ATP- 99.7 1.2E-20 4.1E-25 198.2 -7.0 172 103-295 25-232 (538)
54 2iw3_A Elongation factor 3A; a 99.7 2.7E-20 9.3E-25 204.7 -9.2 188 97-307 669-981 (986)
55 3ux8_A Excinuclease ABC, A sub 99.7 7E-18 2.4E-22 182.0 3.2 174 115-308 32-293 (670)
56 3ozx_A RNAse L inhibitor; ATP 99.7 4E-18 1.4E-22 178.7 -0.1 152 126-295 22-211 (538)
57 3j16_B RLI1P; ribosome recycli 99.7 1.3E-18 4.6E-23 184.4 -4.0 153 122-307 366-553 (608)
58 2iw3_A Elongation factor 3A; a 99.7 5.1E-18 1.7E-22 186.7 0.1 163 100-303 436-624 (986)
59 3j16_B RLI1P; ribosome recycli 99.7 1.1E-17 3.6E-22 177.5 0.6 170 104-294 82-294 (608)
60 3ux8_A Excinuclease ABC, A sub 99.6 2E-16 6.8E-21 170.6 -0.4 76 226-307 540-634 (670)
61 3sop_A Neuronal-specific septi 99.5 2.9E-14 9.9E-19 136.8 8.5 125 131-274 4-149 (270)
62 3b85_A Phosphate starvation-in 99.5 2.2E-14 7.4E-19 132.4 5.2 118 126-275 19-157 (208)
63 2v9p_A Replication protein E1; 99.5 1E-15 3.5E-20 148.8 -4.7 154 99-309 101-262 (305)
64 4aby_A DNA repair protein RECN 99.4 4.6E-15 1.6E-19 150.8 -2.9 68 230-303 296-378 (415)
65 2vf7_A UVRA2, excinuclease ABC 99.4 4.4E-14 1.5E-18 154.1 1.0 75 227-307 728-821 (842)
66 3pih_A Uvrabc system protein A 99.4 2E-14 6.9E-19 158.0 -3.7 76 228-309 804-898 (916)
67 1htw_A HI0065; nucleotide-bind 99.4 2.9E-13 9.9E-18 119.3 4.1 88 102-214 10-97 (158)
68 2ehv_A Hypothetical protein PH 99.3 5.3E-14 1.8E-18 132.3 -1.4 149 126-296 27-207 (251)
69 1znw_A Guanylate kinase, GMP k 99.3 1.2E-14 4.1E-19 133.8 -5.8 29 124-152 15-43 (207)
70 2dpy_A FLII, flagellum-specifi 99.3 3.1E-16 1E-20 160.4 -18.7 159 98-275 130-316 (438)
71 4gp7_A Metallophosphoesterase; 99.3 7E-14 2.4E-18 124.8 -1.3 44 121-176 1-56 (171)
72 2ygr_A Uvrabc system protein A 99.3 1.1E-13 3.9E-18 151.8 -1.8 75 227-307 861-954 (993)
73 2r6f_A Excinuclease ABC subuni 99.3 8.7E-14 3E-18 152.3 -2.7 74 227-307 843-936 (972)
74 1tf7_A KAIC; homohexamer, hexa 99.3 2.8E-13 9.5E-18 142.0 -1.0 156 115-295 26-208 (525)
75 1tq4_A IIGP1, interferon-induc 99.3 8.3E-14 2.9E-18 140.9 -5.3 121 131-275 71-234 (413)
76 2obl_A ESCN; ATPase, hydrolase 99.2 3.6E-14 1.2E-18 140.8 -11.0 159 98-275 44-227 (347)
77 3szr_A Interferon-induced GTP- 99.2 1.1E-11 3.8E-16 131.9 5.9 158 99-275 10-195 (608)
78 3b9q_A Chloroplast SRP recepto 99.2 1.4E-11 4.8E-16 119.9 5.6 165 121-303 92-285 (302)
79 1z6g_A Guanylate kinase; struc 99.2 6.3E-13 2.1E-17 123.4 -4.7 43 121-179 15-57 (218)
80 3aez_A Pantothenate kinase; tr 99.1 7.1E-12 2.4E-16 122.6 2.1 54 99-152 43-113 (312)
81 1e69_A Chromosome segregation 99.1 6.6E-11 2.3E-15 116.2 8.1 66 229-301 219-300 (322)
82 2qnr_A Septin-2, protein NEDD5 99.1 5.5E-11 1.9E-15 115.7 6.6 142 103-275 2-166 (301)
83 2og2_A Putative signal recogni 99.1 6.4E-12 2.2E-16 124.9 -0.3 46 121-178 149-194 (359)
84 3qf7_A RAD50; ABC-ATPase, ATPa 99.1 5.9E-11 2E-15 118.6 6.1 66 229-303 279-363 (365)
85 1s96_A Guanylate kinase, GMP k 99.1 8.1E-12 2.8E-16 116.0 -0.9 121 126-275 13-139 (219)
86 4a74_A DNA repair and recombin 99.1 4.8E-11 1.6E-15 110.5 3.4 27 126-152 22-48 (231)
87 1ye8_A Protein THEP1, hypothet 99.0 5.3E-10 1.8E-14 100.3 8.5 36 238-274 100-138 (178)
88 2w0m_A SSO2452; RECA, SSPF, un 99.0 2.4E-10 8.1E-15 105.7 5.7 43 126-168 20-62 (235)
89 2jeo_A Uridine-cytidine kinase 99.0 3.8E-10 1.3E-14 106.2 6.2 36 115-152 13-48 (245)
90 2pt7_A CAG-ALFA; ATPase, prote 99.0 5.8E-11 2E-15 117.0 -0.5 44 122-177 164-207 (330)
91 3thx_B DNA mismatch repair pro 98.9 7.2E-10 2.5E-14 122.1 7.6 131 121-284 665-804 (918)
92 2i3b_A HCR-ntpase, human cance 98.9 1.1E-10 3.7E-15 105.9 0.7 37 129-179 1-37 (189)
93 2eyu_A Twitching motility prot 98.9 1.3E-09 4.5E-14 103.8 6.9 40 126-177 22-62 (261)
94 2o8b_B DNA mismatch repair pro 98.9 1.1E-09 3.7E-14 122.4 6.7 158 96-294 747-925 (1022)
95 3ec2_A DNA replication protein 98.9 5.3E-09 1.8E-13 93.3 9.6 32 123-154 32-63 (180)
96 1wb9_A DNA mismatch repair pro 98.9 7.5E-09 2.6E-13 112.9 11.7 133 121-284 600-738 (800)
97 3thx_A DNA mismatch repair pro 98.8 1E-09 3.5E-14 121.3 4.3 128 121-281 654-790 (934)
98 1ewq_A DNA mismatch repair pro 98.8 2.8E-09 9.4E-14 115.7 7.3 120 122-275 572-697 (765)
99 1pzn_A RAD51, DNA repair and r 98.8 2.5E-10 8.5E-15 113.4 -1.0 31 123-153 125-155 (349)
100 2kjq_A DNAA-related protein; s 98.8 6.6E-09 2.3E-13 90.3 8.1 27 128-154 35-61 (149)
101 1lw7_A Transcriptional regulat 98.8 4.6E-11 1.6E-15 119.4 -6.8 42 122-175 161-208 (365)
102 2yhs_A FTSY, cell division pro 98.8 5.8E-10 2E-14 114.4 0.5 45 120-176 284-328 (503)
103 1cr0_A DNA primase/helicase; R 98.8 2.9E-09 9.9E-14 102.9 4.7 46 122-167 28-74 (296)
104 1rj9_A FTSY, signal recognitio 98.8 4.3E-09 1.5E-13 102.4 5.4 39 128-178 101-139 (304)
105 2qag_C Septin-7; cell cycle, c 98.8 1E-09 3.6E-14 111.2 0.7 45 98-152 10-54 (418)
106 3e70_C DPA, signal recognition 98.7 7.7E-09 2.6E-13 101.6 6.2 40 126-177 126-165 (328)
107 1n0w_A DNA repair protein RAD5 98.7 5.8E-09 2E-13 97.2 3.5 28 126-153 21-48 (243)
108 2qm8_A GTPase/ATPase; G protei 98.7 9.2E-09 3.1E-13 101.5 3.9 66 98-167 28-93 (337)
109 1p9r_A General secretion pathw 98.7 5E-09 1.7E-13 106.2 2.0 62 98-177 142-203 (418)
110 1nij_A Hypothetical protein YJ 98.7 2.4E-09 8.1E-14 104.9 -0.4 139 130-275 5-188 (318)
111 2gza_A Type IV secretion syste 98.6 4.4E-10 1.5E-14 112.1 -6.1 44 122-177 168-211 (361)
112 1sxj_E Activator 1 40 kDa subu 98.6 9.1E-08 3.1E-12 94.4 10.7 130 127-275 34-173 (354)
113 2oap_1 GSPE-2, type II secreti 98.6 1.5E-09 5.3E-14 112.8 -2.3 140 122-275 253-449 (511)
114 1sq5_A Pantothenate kinase; P- 98.6 7.7E-09 2.6E-13 100.8 2.2 62 98-177 36-121 (308)
115 2o5v_A DNA replication and rep 98.6 2.2E-08 7.7E-13 99.4 5.1 55 240-307 295-350 (359)
116 1tf7_A KAIC; homohexamer, hexa 98.6 1.3E-09 4.6E-14 114.0 -4.1 149 124-294 276-440 (525)
117 3euj_A Chromosome partition pr 98.6 1.6E-08 5.4E-13 103.9 3.6 49 116-179 19-67 (483)
118 2px0_A Flagellar biosynthesis 98.6 1.4E-07 4.6E-12 91.4 10.0 42 127-168 103-145 (296)
119 2qag_B Septin-6, protein NEDD5 98.6 2.7E-09 9.1E-14 108.0 -3.2 42 106-152 22-65 (427)
120 2ewv_A Twitching motility prot 98.6 1.2E-07 3.9E-12 94.9 8.5 39 126-176 133-172 (372)
121 3tr0_A Guanylate kinase, GMP k 98.6 2.1E-08 7.2E-13 91.0 2.7 30 123-152 1-30 (205)
122 3qkt_A DNA double-strand break 98.5 1.2E-07 4.2E-12 93.5 8.3 63 229-297 248-329 (339)
123 3jvv_A Twitching mobility prot 98.5 6.4E-08 2.2E-12 96.1 5.6 27 126-152 120-146 (356)
124 1u0l_A Probable GTPase ENGC; p 98.5 1.3E-08 4.6E-13 98.7 0.7 42 126-179 166-210 (301)
125 2cvh_A DNA repair and recombin 98.5 1.2E-07 4.1E-12 86.7 7.0 39 126-167 17-55 (220)
126 3lnc_A Guanylate kinase, GMP k 98.5 5E-08 1.7E-12 90.7 2.9 32 121-152 19-51 (231)
127 1iy2_A ATP-dependent metallopr 98.4 3.4E-08 1.2E-12 94.5 0.6 50 97-152 47-96 (278)
128 2bdt_A BH3686; alpha-beta prot 98.4 2.6E-07 9E-12 82.8 5.8 24 129-152 2-25 (189)
129 1ixz_A ATP-dependent metallopr 98.4 5.1E-08 1.8E-12 91.8 0.6 50 97-152 23-72 (254)
130 3nwj_A ATSK2; P loop, shikimat 98.3 6.9E-08 2.4E-12 91.2 -0.0 51 98-152 16-71 (250)
131 1ls1_A Signal recognition part 98.3 8.3E-07 2.8E-11 85.8 7.6 62 100-169 77-138 (295)
132 2yv5_A YJEQ protein; hydrolase 98.3 1E-07 3.5E-12 92.5 1.0 41 126-179 162-205 (302)
133 3c8u_A Fructokinase; YP_612366 98.3 2.4E-07 8.3E-12 84.6 2.8 27 126-152 19-45 (208)
134 1zp6_A Hypothetical protein AT 98.3 3E-07 1E-11 82.3 3.4 38 126-177 6-43 (191)
135 1nlf_A Regulatory protein REPA 98.3 1.8E-07 6.2E-12 89.5 1.8 28 126-153 27-54 (279)
136 1zu4_A FTSY; GTPase, signal re 98.3 1E-06 3.6E-11 86.1 7.0 49 121-169 97-145 (320)
137 1lvg_A Guanylate kinase, GMP k 98.2 6E-07 2.1E-11 81.5 3.8 26 127-152 2-27 (198)
138 2p67_A LAO/AO transport system 98.2 7.3E-07 2.5E-11 88.0 4.2 67 99-169 30-96 (341)
139 1pui_A ENGB, probable GTP-bind 98.2 8.2E-08 2.8E-12 87.2 -2.6 47 99-152 3-49 (210)
140 3a00_A Guanylate kinase, GMP k 98.2 8.9E-07 3E-11 79.4 4.1 24 129-152 1-24 (186)
141 1vma_A Cell division protein F 98.2 1.8E-06 6.3E-11 83.8 6.5 48 122-169 97-144 (306)
142 1t9h_A YLOQ, probable GTPase E 98.2 8.1E-08 2.8E-12 93.3 -3.2 43 124-178 168-213 (307)
143 2x8a_A Nuclear valosin-contain 98.2 3.9E-08 1.3E-12 94.2 -5.5 29 122-152 39-67 (274)
144 3asz_A Uridine kinase; cytidin 98.2 1.3E-06 4.5E-11 79.5 4.7 27 126-152 3-29 (211)
145 3uie_A Adenylyl-sulfate kinase 98.1 6.5E-07 2.2E-11 81.2 1.9 28 125-152 21-48 (200)
146 2rcn_A Probable GTPase ENGC; Y 98.1 8.7E-07 3E-11 87.7 2.8 39 127-177 213-253 (358)
147 3lda_A DNA repair protein RAD5 98.1 4E-07 1.4E-11 91.7 0.2 26 126-151 175-200 (400)
148 1qhl_A Protein (cell division 98.1 8.8E-08 3E-12 89.0 -4.5 38 130-179 28-65 (227)
149 1j8m_F SRP54, signal recogniti 98.1 4.8E-06 1.7E-10 80.5 7.4 62 102-170 77-139 (297)
150 2j41_A Guanylate kinase; GMP, 98.1 1.4E-06 4.9E-11 78.7 3.4 28 125-152 2-29 (207)
151 4eun_A Thermoresistant glucoki 98.0 2.2E-06 7.5E-11 77.6 3.7 27 126-152 26-52 (200)
152 2zr9_A Protein RECA, recombina 98.0 4.2E-06 1.4E-10 82.8 5.8 42 126-167 58-99 (349)
153 3kl4_A SRP54, signal recogniti 98.0 1.1E-05 3.7E-10 81.9 8.6 42 128-169 96-137 (433)
154 2ffh_A Protein (FFH); SRP54, s 98.0 9.3E-06 3.2E-10 82.2 7.2 60 102-169 79-138 (425)
155 3vaa_A Shikimate kinase, SK; s 98.0 4.6E-06 1.6E-10 75.4 4.4 32 121-152 17-48 (199)
156 2f1r_A Molybdopterin-guanine d 98.0 1.1E-06 3.9E-11 77.9 0.4 38 130-179 3-43 (171)
157 1kgd_A CASK, peripheral plasma 98.0 4.5E-06 1.5E-10 74.3 4.1 26 127-152 3-28 (180)
158 1rz3_A Hypothetical protein rb 97.9 8.2E-06 2.8E-10 74.0 5.8 38 126-163 19-56 (201)
159 2bbw_A Adenylate kinase 4, AK4 97.9 1E-06 3.4E-11 82.6 -0.3 37 128-176 26-65 (246)
160 3tqc_A Pantothenate kinase; bi 97.9 2.4E-06 8.3E-11 83.4 2.1 22 131-152 94-115 (321)
161 3kta_A Chromosome segregation 97.9 5.9E-06 2E-10 73.3 4.3 39 122-173 20-58 (182)
162 4e22_A Cytidylate kinase; P-lo 97.9 2.2E-06 7.6E-11 80.7 0.6 35 127-173 25-62 (252)
163 3dm5_A SRP54, signal recogniti 97.8 4.7E-05 1.6E-09 77.3 9.7 43 128-170 99-141 (443)
164 1kag_A SKI, shikimate kinase I 97.8 1.3E-05 4.3E-10 70.3 4.3 25 128-152 3-27 (173)
165 1np6_A Molybdopterin-guanine d 97.8 2.6E-05 9E-10 69.2 6.0 49 129-177 6-54 (174)
166 3ney_A 55 kDa erythrocyte memb 97.8 2.2E-05 7.4E-10 71.2 5.5 28 125-152 15-42 (197)
167 1xjc_A MOBB protein homolog; s 97.8 2.9E-05 9.9E-10 68.5 6.0 49 130-178 5-54 (169)
168 1knq_A Gluconate kinase; ALFA/ 97.7 2.3E-05 7.7E-10 69.0 4.9 26 127-152 6-31 (175)
169 3tau_A Guanylate kinase, GMP k 97.7 1.6E-05 5.5E-10 72.4 3.9 26 127-152 6-31 (208)
170 2dr3_A UPF0273 protein PH0284; 97.7 2.7E-05 9.2E-10 72.1 5.5 43 126-168 20-62 (247)
171 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 1.3E-05 4.3E-10 80.4 3.3 51 125-176 16-67 (392)
172 2yvu_A Probable adenylyl-sulfa 97.7 3.2E-05 1.1E-09 68.9 5.4 41 126-166 10-50 (186)
173 1f2t_B RAD50 ABC-ATPase; DNA d 97.7 1.5E-05 5.2E-10 68.8 2.8 52 238-295 82-136 (148)
174 2www_A Methylmalonic aciduria 97.7 3.9E-05 1.3E-09 75.8 5.9 44 127-170 72-115 (349)
175 2vp4_A Deoxynucleoside kinase; 97.7 1.6E-05 5.3E-10 73.7 2.8 29 124-152 15-43 (230)
176 2pez_A Bifunctional 3'-phospho 97.7 3.7E-05 1.3E-09 68.0 5.0 38 127-164 3-40 (179)
177 1in4_A RUVB, holliday junction 97.6 1.3E-06 4.5E-11 85.8 -5.5 40 130-177 52-91 (334)
178 3k1j_A LON protease, ATP-depen 97.6 1.7E-05 5.7E-10 84.2 2.5 46 103-152 38-83 (604)
179 3cr8_A Sulfate adenylyltranfer 97.6 1.5E-05 5.3E-10 83.3 2.2 41 125-177 365-407 (552)
180 2ius_A DNA translocase FTSK; n 97.6 0.00012 4.2E-09 75.6 8.6 31 122-152 160-190 (512)
181 3hr8_A Protein RECA; alpha and 97.5 5.6E-05 1.9E-09 74.7 4.9 43 126-168 58-100 (356)
182 2qt1_A Nicotinamide riboside k 97.5 5E-05 1.7E-09 68.8 4.2 39 124-166 16-54 (207)
183 1oix_A RAS-related protein RAB 97.5 3.2E-05 1.1E-09 69.2 2.7 23 130-152 30-52 (191)
184 3m6a_A ATP-dependent protease 97.5 4.2E-05 1.4E-09 80.1 3.9 59 101-176 85-143 (543)
185 2v3c_C SRP54, signal recogniti 97.5 6.6E-05 2.3E-09 76.3 5.0 41 130-170 100-140 (432)
186 1svm_A Large T antigen; AAA+ f 97.5 2E-05 6.9E-10 78.6 1.0 31 122-152 162-192 (377)
187 1cke_A CK, MSSA, protein (cyti 97.5 3.3E-05 1.1E-09 70.8 2.1 24 129-152 5-28 (227)
188 2chg_A Replication factor C sm 97.5 0.00042 1.4E-08 62.2 9.4 39 237-275 102-141 (226)
189 3kta_B Chromosome segregation 97.4 0.0001 3.5E-09 65.3 4.5 52 239-296 88-141 (173)
190 1fnn_A CDC6P, cell division co 97.4 0.00022 7.4E-09 70.5 7.4 36 131-166 46-82 (389)
191 3pih_A Uvrabc system protein A 97.4 9.3E-05 3.2E-09 81.6 5.0 75 227-307 462-554 (916)
192 1m7g_A Adenylylsulfate kinase; 97.4 0.00011 3.7E-09 66.9 4.6 28 126-153 22-49 (211)
193 2b8t_A Thymidine kinase; deoxy 97.4 0.0006 2E-08 62.9 9.5 37 127-163 10-46 (223)
194 3n70_A Transport activator; si 97.4 0.00047 1.6E-08 58.8 7.9 25 128-152 23-47 (145)
195 1yrb_A ATP(GTP)binding protein 97.3 0.00021 7.1E-09 66.9 5.9 45 127-172 12-56 (262)
196 1jjv_A Dephospho-COA kinase; P 97.3 8E-05 2.7E-09 67.3 2.7 22 131-152 4-25 (206)
197 1y63_A LMAJ004144AAA protein; 97.3 0.00015 5E-09 64.5 4.4 32 121-152 2-33 (184)
198 3p32_A Probable GTPase RV1496/ 97.3 0.00019 6.3E-09 71.0 5.4 44 127-170 77-120 (355)
199 2if2_A Dephospho-COA kinase; a 97.3 0.00012 4.1E-09 65.9 3.5 22 131-152 3-24 (204)
200 1jbk_A CLPB protein; beta barr 97.3 0.002 6.8E-08 56.2 11.4 26 128-153 42-67 (195)
201 2r6f_A Excinuclease ABC subuni 97.3 0.00012 4.2E-09 80.5 4.1 74 228-307 503-594 (972)
202 2dhr_A FTSH; AAA+ protein, hex 97.3 0.00022 7.6E-09 73.6 5.8 50 97-152 38-87 (499)
203 1odf_A YGR205W, hypothetical 3 97.3 0.00016 5.5E-09 69.5 4.4 29 127-155 29-57 (290)
204 2xxa_A Signal recognition part 97.2 0.00037 1.3E-08 70.7 6.8 42 128-169 99-141 (433)
205 1w1w_A Structural maintenance 97.2 0.00016 5.4E-09 73.4 4.1 27 126-152 23-49 (430)
206 2dy1_A Elongation factor G; tr 97.2 0.00021 7.2E-09 76.6 5.2 29 124-152 4-32 (665)
207 4eaq_A DTMP kinase, thymidylat 97.2 0.00028 9.5E-09 65.3 5.3 27 126-152 23-49 (229)
208 3ice_A Transcription terminati 97.2 5.5E-05 1.9E-09 75.0 0.3 56 100-156 134-201 (422)
209 2vf7_A UVRA2, excinuclease ABC 97.2 0.0002 6.9E-09 78.2 4.5 73 229-307 379-469 (842)
210 2ygr_A Uvrabc system protein A 97.2 0.00014 4.8E-09 80.2 3.2 74 228-307 520-611 (993)
211 2z4s_A Chromosomal replication 97.2 0.00049 1.7E-08 70.0 6.9 27 129-155 130-156 (440)
212 2p5t_B PEZT; postsegregational 97.2 0.00043 1.5E-08 64.8 6.0 28 125-152 28-55 (253)
213 3end_A Light-independent proto 97.1 0.00044 1.5E-08 66.5 6.0 43 127-169 39-81 (307)
214 1udx_A The GTP-binding protein 97.1 4.9E-05 1.7E-09 76.8 -0.8 32 121-152 149-180 (416)
215 3t61_A Gluconokinase; PSI-biol 97.1 0.00032 1.1E-08 63.1 4.4 24 129-152 18-41 (202)
216 2v1u_A Cell division control p 97.1 0.0029 1E-07 62.1 11.9 40 127-166 42-87 (387)
217 2j37_W Signal recognition part 97.1 0.00047 1.6E-08 71.2 6.2 43 127-169 99-141 (504)
218 1a7j_A Phosphoribulokinase; tr 97.1 0.0003 1E-08 67.5 4.4 39 128-166 4-42 (290)
219 2qor_A Guanylate kinase; phosp 97.1 0.00028 9.5E-09 63.8 3.9 27 126-152 9-35 (204)
220 2f9l_A RAB11B, member RAS onco 97.1 0.00028 9.4E-09 63.2 3.5 22 131-152 7-28 (199)
221 3ea0_A ATPase, para family; al 97.1 0.00052 1.8E-08 63.4 5.5 46 128-173 3-50 (245)
222 1kht_A Adenylate kinase; phosp 97.1 0.0005 1.7E-08 60.7 5.1 25 129-153 3-27 (192)
223 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00044 1.5E-08 65.1 5.0 39 128-166 3-41 (260)
224 1g3q_A MIND ATPase, cell divis 97.0 0.00067 2.3E-08 62.4 5.8 43 130-172 3-46 (237)
225 3bos_A Putative DNA replicatio 97.0 0.0007 2.4E-08 61.8 5.9 38 128-165 51-88 (242)
226 2w58_A DNAI, primosome compone 97.0 0.00058 2E-08 61.2 5.1 36 130-165 55-90 (202)
227 1njg_A DNA polymerase III subu 97.0 0.0008 2.7E-08 61.0 5.8 38 238-275 127-165 (250)
228 1u94_A RECA protein, recombina 97.0 0.00063 2.2E-08 67.2 5.4 42 126-167 60-101 (356)
229 3q9l_A Septum site-determining 97.0 0.00082 2.8E-08 62.6 5.8 45 129-173 2-47 (260)
230 1cp2_A CP2, nitrogenase iron p 97.0 0.00074 2.5E-08 63.4 5.5 42 131-172 3-44 (269)
231 3kjh_A CO dehydrogenase/acetyl 96.9 0.00048 1.6E-08 63.6 3.9 41 131-172 2-42 (254)
232 1nks_A Adenylate kinase; therm 96.9 0.00065 2.2E-08 60.0 4.5 34 131-164 3-36 (194)
233 4ag6_A VIRB4 ATPase, type IV s 96.9 0.00074 2.5E-08 67.4 5.4 39 128-166 34-72 (392)
234 1v5w_A DMC1, meiotic recombina 96.9 0.0006 2.1E-08 67.0 4.5 42 126-167 119-166 (343)
235 2r8r_A Sensor protein; KDPD, P 96.9 0.0012 4.1E-08 60.8 6.1 45 127-172 3-48 (228)
236 1qhx_A CPT, protein (chloramph 96.9 0.00086 3E-08 58.7 5.0 24 129-152 3-26 (178)
237 1sxj_D Activator 1 41 kDa subu 96.9 0.0029 9.9E-08 61.5 9.2 37 239-275 135-172 (353)
238 2z0h_A DTMP kinase, thymidylat 96.9 0.0013 4.5E-08 58.4 6.0 35 131-165 2-36 (197)
239 3cm0_A Adenylate kinase; ATP-b 96.9 0.0005 1.7E-08 60.7 3.1 25 128-152 3-27 (186)
240 2gj8_A MNME, tRNA modification 96.8 0.00043 1.5E-08 60.5 2.5 26 127-152 2-27 (172)
241 3cio_A ETK, tyrosine-protein k 96.8 0.0014 4.7E-08 63.2 6.3 46 127-172 102-148 (299)
242 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00067 2.3E-08 58.3 3.4 23 130-152 24-46 (149)
243 2r6a_A DNAB helicase, replicat 96.8 0.0014 4.7E-08 67.0 6.3 44 125-168 199-243 (454)
244 1vht_A Dephospho-COA kinase; s 96.8 0.00073 2.5E-08 61.5 3.8 32 129-166 4-35 (218)
245 2afh_E Nitrogenase iron protei 96.8 0.0013 4.4E-08 62.6 5.7 42 131-172 4-45 (289)
246 2z43_A DNA repair and recombin 96.8 0.00076 2.6E-08 65.7 3.8 42 126-167 104-151 (324)
247 3kb2_A SPBC2 prophage-derived 96.7 0.00086 2.9E-08 58.1 3.8 22 131-152 3-24 (173)
248 2ph1_A Nucleotide-binding prot 96.7 0.0018 6.3E-08 60.7 6.4 45 128-172 17-62 (262)
249 1wcv_1 SOJ, segregation protei 96.7 0.001 3.5E-08 62.2 4.3 45 127-172 4-49 (257)
250 1xp8_A RECA protein, recombina 96.7 0.0015 5.1E-08 64.8 5.4 43 126-168 71-113 (366)
251 1via_A Shikimate kinase; struc 96.7 0.00084 2.9E-08 58.8 3.2 22 131-152 6-27 (175)
252 1ega_A Protein (GTP-binding pr 96.7 0.00056 1.9E-08 66.0 2.2 26 127-152 6-31 (301)
253 3bh0_A DNAB-like replicative h 96.7 0.0019 6.5E-08 62.6 6.0 43 126-168 65-107 (315)
254 3bfv_A CAPA1, CAPB2, membrane 96.7 0.0024 8.3E-08 60.5 6.7 46 127-172 80-126 (271)
255 1iqp_A RFCS; clamp loader, ext 96.7 0.0064 2.2E-07 58.3 9.8 37 238-274 111-148 (327)
256 4dzz_A Plasmid partitioning pr 96.7 0.0016 5.5E-08 58.2 5.2 40 131-170 3-43 (206)
257 1q3t_A Cytidylate kinase; nucl 96.7 0.0011 3.8E-08 61.2 4.1 27 126-152 13-39 (236)
258 1gvn_B Zeta; postsegregational 96.7 0.0024 8.4E-08 61.0 6.5 27 126-152 30-56 (287)
259 3h4m_A Proteasome-activating n 96.6 0.013 4.4E-07 55.3 11.5 26 127-152 49-74 (285)
260 2xj4_A MIPZ; replication, cell 96.6 0.0015 5.1E-08 62.3 4.9 44 130-173 5-49 (286)
261 2pbr_A DTMP kinase, thymidylat 96.6 0.002 6.9E-08 56.9 5.5 34 131-164 2-35 (195)
262 2zts_A Putative uncharacterize 96.6 0.0018 6.2E-08 59.6 5.3 43 126-168 27-70 (251)
263 2wsm_A Hydrogenase expression/ 96.6 0.0017 5.7E-08 58.9 5.0 40 129-169 30-69 (221)
264 1l8q_A Chromosomal replication 96.6 0.0016 5.5E-08 63.0 5.1 37 128-164 36-72 (324)
265 2plr_A DTMP kinase, probable t 96.6 0.002 6.7E-08 57.8 5.3 25 128-152 3-27 (213)
266 1gtv_A TMK, thymidylate kinase 96.6 0.00054 1.9E-08 61.9 1.6 33 131-163 2-34 (214)
267 3iij_A Coilin-interacting nucl 96.6 0.0012 4E-08 58.1 3.7 27 126-152 8-34 (180)
268 3t34_A Dynamin-related protein 96.6 0.0013 4.5E-08 64.9 4.4 39 130-178 35-73 (360)
269 1nn5_A Similar to deoxythymidy 96.6 0.0024 8.1E-08 57.5 5.8 34 127-160 7-40 (215)
270 2oze_A ORF delta'; para, walke 96.6 0.0017 5.8E-08 62.0 4.9 42 129-170 34-78 (298)
271 2wji_A Ferrous iron transport 96.6 0.00093 3.2E-08 57.7 2.8 23 130-152 4-26 (165)
272 3la6_A Tyrosine-protein kinase 96.6 0.0027 9.3E-08 60.7 6.1 46 127-172 90-136 (286)
273 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0012 4.2E-08 64.8 3.7 30 123-152 16-47 (359)
274 1uj2_A Uridine-cytidine kinase 96.5 0.0014 4.9E-08 61.1 4.1 23 130-152 23-45 (252)
275 3lw7_A Adenylate kinase relate 96.5 0.0012 4.3E-08 56.9 3.4 20 130-149 2-21 (179)
276 1hyq_A MIND, cell division inh 96.5 0.0027 9.1E-08 59.3 5.9 44 130-173 3-47 (263)
277 1sxj_B Activator 1 37 kDa subu 96.5 0.0034 1.2E-07 60.1 6.7 38 238-275 108-146 (323)
278 2rhm_A Putative kinase; P-loop 96.5 0.0015 5.2E-08 57.7 3.6 26 127-152 3-28 (193)
279 2ohf_A Protein OLA1, GTP-bindi 96.5 0.0012 4E-08 66.0 3.0 51 125-176 18-68 (396)
280 2qgz_A Helicase loader, putati 96.5 0.0027 9.2E-08 61.4 5.4 39 128-166 151-190 (308)
281 2c95_A Adenylate kinase 1; tra 96.4 0.0019 6.3E-08 57.3 4.0 26 127-152 7-32 (196)
282 4a1f_A DNAB helicase, replicat 96.4 0.0033 1.1E-07 61.6 6.0 45 126-170 43-87 (338)
283 3k9g_A PF-32 protein; ssgcid, 96.4 0.002 6.9E-08 60.4 4.4 44 127-171 25-69 (267)
284 2wjg_A FEOB, ferrous iron tran 96.4 0.0014 4.8E-08 57.5 3.0 23 130-152 8-30 (188)
285 2wwf_A Thymidilate kinase, put 96.4 0.0032 1.1E-07 56.6 5.5 33 127-159 8-40 (212)
286 1sxj_C Activator 1 40 kDa subu 96.4 0.0011 3.7E-08 64.8 2.5 26 127-152 42-69 (340)
287 3trf_A Shikimate kinase, SK; a 96.4 0.0018 6E-08 57.1 3.6 25 128-152 4-28 (185)
288 2v54_A DTMP kinase, thymidylat 96.4 0.0021 7.2E-08 57.4 4.2 25 128-152 3-27 (204)
289 4ad8_A DNA repair protein RECN 96.4 0.00065 2.2E-08 70.6 0.8 30 122-152 54-83 (517)
290 2ze6_A Isopentenyl transferase 96.4 0.0017 5.7E-08 60.9 3.6 22 131-152 3-24 (253)
291 2qtf_A Protein HFLX, GTP-bindi 96.4 0.0011 3.8E-08 65.7 2.4 49 128-177 177-226 (364)
292 3fwy_A Light-independent proto 96.4 0.0037 1.3E-07 60.6 6.1 46 126-171 45-90 (314)
293 1ly1_A Polynucleotide kinase; 96.4 0.0018 6.3E-08 56.4 3.6 21 131-151 4-24 (181)
294 2jaq_A Deoxyguanosine kinase; 96.4 0.002 7E-08 57.3 3.9 22 131-152 2-23 (205)
295 4ad8_A DNA repair protein RECN 96.4 0.0013 4.3E-08 68.4 2.7 59 231-295 399-471 (517)
296 3zq6_A Putative arsenical pump 96.4 0.0035 1.2E-07 60.9 5.6 45 127-172 10-56 (324)
297 3io5_A Recombination and repai 96.3 0.0029 9.9E-08 61.2 4.8 40 126-166 26-67 (333)
298 3r20_A Cytidylate kinase; stru 96.3 0.0022 7.4E-08 59.5 3.7 25 128-152 8-32 (233)
299 2qby_A CDC6 homolog 1, cell di 96.3 0.0029 1E-07 62.0 5.0 39 127-165 43-84 (386)
300 1lv7_A FTSH; alpha/beta domain 96.3 0.0021 7.1E-08 60.0 3.7 22 131-152 47-68 (257)
301 1mky_A Probable GTP-binding pr 96.3 0.0018 6E-08 65.8 3.3 23 130-152 181-203 (439)
302 2zej_A Dardarin, leucine-rich 96.3 0.0014 4.9E-08 57.6 2.3 22 131-152 4-25 (184)
303 1g5t_A COB(I)alamin adenosyltr 96.3 0.017 5.9E-07 51.8 9.3 144 129-295 28-178 (196)
304 4fcw_A Chaperone protein CLPB; 96.3 0.0029 9.9E-08 60.5 4.6 37 129-165 47-83 (311)
305 3qks_A DNA double-strand break 96.3 0.0021 7.2E-08 58.1 3.4 23 130-152 24-46 (203)
306 1ukz_A Uridylate kinase; trans 96.3 0.0034 1.2E-07 56.2 4.7 26 127-152 13-38 (203)
307 2orw_A Thymidine kinase; TMTK, 96.3 0.0043 1.5E-07 55.2 5.4 36 128-163 2-37 (184)
308 1tev_A UMP-CMP kinase; ploop, 96.3 0.0021 7.1E-08 56.8 3.2 24 129-152 3-26 (196)
309 1aky_A Adenylate kinase; ATP:A 96.2 0.003 1E-07 57.5 4.2 26 127-152 2-27 (220)
310 3co5_A Putative two-component 96.2 0.0035 1.2E-07 53.1 4.3 36 239-274 77-114 (143)
311 3fkq_A NTRC-like two-domain pr 96.2 0.0058 2E-07 60.5 6.5 47 125-172 139-186 (373)
312 3pvs_A Replication-associated 96.2 0.024 8.2E-07 57.6 11.2 23 130-152 51-73 (447)
313 2grj_A Dephospho-COA kinase; T 96.2 0.0027 9.1E-08 57.0 3.7 25 128-152 11-35 (192)
314 1ex7_A Guanylate kinase; subst 96.2 0.0024 8.3E-08 57.0 3.3 21 132-152 4-24 (186)
315 2p65_A Hypothetical protein PF 96.2 0.0036 1.2E-07 54.5 4.3 26 128-153 42-67 (187)
316 1uf9_A TT1252 protein; P-loop, 96.2 0.0025 8.5E-08 56.8 3.4 25 128-152 7-31 (203)
317 2bwj_A Adenylate kinase 5; pho 96.2 0.0029 1E-07 56.2 3.7 25 128-152 11-35 (199)
318 2vli_A Antibiotic resistance p 96.2 0.0025 8.7E-08 55.8 3.3 25 128-152 4-28 (183)
319 2iyv_A Shikimate kinase, SK; t 96.2 0.0023 7.8E-08 56.4 2.8 24 129-152 2-25 (184)
320 3ld9_A DTMP kinase, thymidylat 96.2 0.0054 1.9E-07 56.4 5.4 42 127-168 19-61 (223)
321 3uk6_A RUVB-like 2; hexameric 96.2 0.0069 2.4E-07 59.3 6.6 26 127-152 68-93 (368)
322 1m2o_B GTP-binding protein SAR 96.1 0.0029 1E-07 56.0 3.4 30 122-152 17-46 (190)
323 2qag_A Septin-2, protein NEDD5 96.1 0.0013 4.5E-08 65.0 1.1 44 99-152 17-60 (361)
324 1jr3_A DNA polymerase III subu 96.1 0.0076 2.6E-07 59.0 6.7 38 238-275 120-158 (373)
325 1jal_A YCHF protein; nucleotid 96.1 0.0037 1.3E-07 61.7 4.2 47 129-176 2-48 (363)
326 2ce7_A Cell division protein F 96.1 0.0046 1.6E-07 63.4 5.1 48 99-152 25-72 (476)
327 2q6t_A DNAB replication FORK h 96.1 0.0065 2.2E-07 61.7 6.1 43 126-168 197-240 (444)
328 1ypw_A Transitional endoplasmi 96.1 0.0033 1.1E-07 68.8 4.1 30 123-152 232-261 (806)
329 3te6_A Regulatory protein SIR3 96.1 0.08 2.7E-06 51.2 13.5 27 127-153 43-69 (318)
330 3ug7_A Arsenical pump-driving 96.1 0.0058 2E-07 60.1 5.5 44 128-172 24-68 (349)
331 2cdn_A Adenylate kinase; phosp 96.0 0.0045 1.6E-07 55.3 4.3 26 127-152 18-43 (201)
332 2f6r_A COA synthase, bifunctio 96.0 0.0039 1.3E-07 59.3 4.0 31 130-166 76-106 (281)
333 4edh_A DTMP kinase, thymidylat 96.0 0.0075 2.6E-07 55.0 5.7 38 127-164 4-41 (213)
334 1zd8_A GTP:AMP phosphotransfer 96.0 0.0034 1.2E-07 57.4 3.4 26 127-152 5-30 (227)
335 3lv8_A DTMP kinase, thymidylat 96.0 0.008 2.7E-07 55.7 5.9 33 127-159 25-57 (236)
336 3fb4_A Adenylate kinase; psych 96.0 0.0037 1.3E-07 56.5 3.5 22 131-152 2-23 (216)
337 1qf9_A UMP/CMP kinase, protein 96.0 0.0042 1.4E-07 54.6 3.8 24 129-152 6-29 (194)
338 4tmk_A Protein (thymidylate ki 96.0 0.0086 2.9E-07 54.6 6.0 31 128-158 2-32 (213)
339 3lxx_A GTPase IMAP family memb 96.0 0.0032 1.1E-07 58.1 3.1 23 130-152 30-52 (239)
340 3cf0_A Transitional endoplasmi 96.0 0.0041 1.4E-07 59.6 4.0 27 126-152 46-72 (301)
341 1w1w_A Structural maintenance 96.0 0.0049 1.7E-07 62.3 4.6 54 238-297 356-412 (430)
342 3ake_A Cytidylate kinase; CMP 96.0 0.0044 1.5E-07 55.4 3.8 22 131-152 4-25 (208)
343 2hf9_A Probable hydrogenase ni 96.0 0.0057 1.9E-07 55.5 4.6 39 129-168 38-76 (226)
344 3v9p_A DTMP kinase, thymidylat 96.0 0.0066 2.3E-07 55.9 5.0 37 127-163 23-63 (227)
345 3dl0_A Adenylate kinase; phosp 95.9 0.004 1.4E-07 56.4 3.3 22 131-152 2-23 (216)
346 1z2a_A RAS-related protein RAB 95.9 0.0045 1.5E-07 52.8 3.5 22 131-152 7-28 (168)
347 2dyk_A GTP-binding protein; GT 95.9 0.0041 1.4E-07 52.7 3.2 23 130-152 2-24 (161)
348 1zak_A Adenylate kinase; ATP:A 95.9 0.0041 1.4E-07 56.6 3.4 25 128-152 4-28 (222)
349 2i1q_A DNA repair and recombin 95.9 0.0033 1.1E-07 60.9 2.8 42 126-167 95-152 (322)
350 2ged_A SR-beta, signal recogni 95.9 0.0059 2E-07 53.7 4.2 26 127-152 46-71 (193)
351 1e6c_A Shikimate kinase; phosp 95.9 0.0046 1.6E-07 53.6 3.3 23 130-152 3-25 (173)
352 3auy_A DNA double-strand break 95.9 0.0064 2.2E-07 60.2 4.8 51 238-294 306-358 (371)
353 2lkc_A Translation initiation 95.8 0.0055 1.9E-07 52.9 3.8 26 127-152 6-31 (178)
354 3bgw_A DNAB-like replicative h 95.8 0.0089 3.1E-07 60.7 5.8 46 126-171 194-239 (444)
355 2pt5_A Shikimate kinase, SK; a 95.8 0.0057 1.9E-07 52.7 3.7 22 131-152 2-23 (168)
356 3ez2_A Plasmid partition prote 95.8 0.0068 2.3E-07 60.5 4.8 45 127-172 106-157 (398)
357 3cwq_A Para family chromosome 95.8 0.01 3.5E-07 53.7 5.6 38 131-169 2-40 (209)
358 3tlx_A Adenylate kinase 2; str 95.8 0.0049 1.7E-07 57.2 3.4 26 127-152 27-52 (243)
359 1kao_A RAP2A; GTP-binding prot 95.8 0.0056 1.9E-07 51.9 3.6 22 131-152 5-26 (167)
360 1z0j_A RAB-22, RAS-related pro 95.8 0.0057 2E-07 52.2 3.6 22 131-152 8-29 (170)
361 3umf_A Adenylate kinase; rossm 95.8 0.0059 2E-07 55.9 3.8 27 126-152 26-52 (217)
362 1zuh_A Shikimate kinase; alpha 95.8 0.0058 2E-07 52.9 3.6 23 130-152 8-30 (168)
363 3e2i_A Thymidine kinase; Zn-bi 95.8 0.048 1.6E-06 49.6 9.7 36 127-163 26-62 (219)
364 1u8z_A RAS-related protein RAL 95.7 0.0058 2E-07 51.9 3.5 22 131-152 6-27 (168)
365 1ihu_A Arsenical pump-driving 95.7 0.011 3.9E-07 62.1 6.4 45 127-172 6-50 (589)
366 3d3q_A TRNA delta(2)-isopenten 95.7 0.0084 2.9E-07 58.6 5.0 33 130-167 8-40 (340)
367 2ce2_X GTPase HRAS; signaling 95.7 0.0054 1.9E-07 51.9 3.2 22 131-152 5-26 (166)
368 1qvr_A CLPB protein; coiled co 95.7 0.02 6.7E-07 63.1 8.5 25 129-153 191-215 (854)
369 1z08_A RAS-related protein RAB 95.7 0.0061 2.1E-07 52.1 3.6 22 131-152 8-29 (170)
370 1ek0_A Protein (GTP-binding pr 95.7 0.0061 2.1E-07 51.9 3.5 22 131-152 5-26 (170)
371 1c1y_A RAS-related protein RAP 95.7 0.0061 2.1E-07 51.8 3.5 22 131-152 5-26 (167)
372 1g16_A RAS-related protein SEC 95.7 0.0058 2E-07 52.2 3.2 22 131-152 5-26 (170)
373 1ky3_A GTP-binding protein YPT 95.7 0.0065 2.2E-07 52.5 3.6 23 130-152 9-31 (182)
374 3k53_A Ferrous iron transport 95.7 0.0046 1.6E-07 58.3 2.7 23 130-152 4-26 (271)
375 1wms_A RAB-9, RAB9, RAS-relate 95.6 0.0068 2.3E-07 52.3 3.6 23 130-152 8-30 (177)
376 2erx_A GTP-binding protein DI- 95.6 0.0057 2E-07 52.2 3.1 22 131-152 5-26 (172)
377 3crm_A TRNA delta(2)-isopenten 95.6 0.0095 3.3E-07 57.8 4.9 32 130-166 6-37 (323)
378 2fn4_A P23, RAS-related protei 95.6 0.0065 2.2E-07 52.4 3.3 23 130-152 10-32 (181)
379 3be4_A Adenylate kinase; malar 95.6 0.007 2.4E-07 55.0 3.6 25 128-152 4-28 (217)
380 2chq_A Replication factor C sm 95.6 0.0065 2.2E-07 58.0 3.5 23 131-153 40-62 (319)
381 3ez9_A Para; DNA binding, wing 95.6 0.007 2.4E-07 60.6 3.8 46 127-173 109-161 (403)
382 1f6b_A SAR1; gtpases, N-termin 95.6 0.0033 1.1E-07 56.1 1.3 29 122-151 19-47 (198)
383 1r2q_A RAS-related protein RAB 95.6 0.0076 2.6E-07 51.3 3.5 22 131-152 8-29 (170)
384 3clv_A RAB5 protein, putative; 95.6 0.0075 2.6E-07 53.0 3.6 24 129-152 7-30 (208)
385 2nzj_A GTP-binding protein REM 95.5 0.006 2E-07 52.5 2.8 23 130-152 5-27 (175)
386 3t1o_A Gliding protein MGLA; G 95.5 0.0075 2.6E-07 52.9 3.5 22 131-152 16-37 (198)
387 4dsu_A GTPase KRAS, isoform 2B 95.5 0.0077 2.6E-07 52.4 3.6 22 131-152 6-27 (189)
388 3iqw_A Tail-anchored protein t 95.5 0.011 3.9E-07 57.6 5.1 40 130-169 17-56 (334)
389 2woo_A ATPase GET3; tail-ancho 95.5 0.013 4.5E-07 57.0 5.4 41 130-171 20-60 (329)
390 2xb4_A Adenylate kinase; ATP-b 95.5 0.0082 2.8E-07 54.8 3.7 22 131-152 2-23 (223)
391 2oil_A CATX-8, RAS-related pro 95.5 0.008 2.7E-07 52.9 3.5 23 130-152 26-48 (193)
392 3bc1_A RAS-related protein RAB 95.5 0.008 2.7E-07 52.5 3.5 23 130-152 12-34 (195)
393 1r8s_A ADP-ribosylation factor 95.5 0.0083 2.8E-07 51.0 3.5 22 131-152 2-23 (164)
394 1upt_A ARL1, ADP-ribosylation 95.5 0.0084 2.9E-07 51.3 3.5 25 128-152 6-30 (171)
395 3q85_A GTP-binding protein REM 95.5 0.0064 2.2E-07 52.0 2.8 22 131-152 4-25 (169)
396 3pg5_A Uncharacterized protein 95.5 0.0086 2.9E-07 59.1 4.0 41 131-171 3-44 (361)
397 1z0f_A RAB14, member RAS oncog 95.5 0.0085 2.9E-07 51.6 3.5 23 130-152 16-38 (179)
398 3q72_A GTP-binding protein RAD 95.5 0.0045 1.5E-07 52.8 1.7 22 131-152 4-25 (166)
399 3pxi_A Negative regulator of g 95.4 0.029 9.8E-07 60.9 8.4 34 131-164 523-556 (758)
400 1xx6_A Thymidine kinase; NESG, 95.4 0.016 5.4E-07 51.9 5.3 38 127-164 6-43 (191)
401 2h92_A Cytidylate kinase; ross 95.4 0.01 3.5E-07 53.6 4.1 24 129-152 3-26 (219)
402 2a9k_A RAS-related protein RAL 95.4 0.0087 3E-07 51.9 3.5 23 130-152 19-41 (187)
403 1e4v_A Adenylate kinase; trans 95.4 0.0072 2.5E-07 54.6 3.1 22 131-152 2-23 (214)
404 1ak2_A Adenylate kinase isoenz 95.4 0.011 3.8E-07 54.3 4.3 26 127-152 14-39 (233)
405 1svi_A GTP-binding protein YSX 95.4 0.0079 2.7E-07 52.9 3.2 25 128-152 22-46 (195)
406 2gks_A Bifunctional SAT/APS ki 95.4 0.01 3.4E-07 62.0 4.5 40 127-166 370-409 (546)
407 2y8e_A RAB-protein 6, GH09086P 95.4 0.0081 2.8E-07 51.7 3.2 23 130-152 15-37 (179)
408 3con_A GTPase NRAS; structural 95.4 0.0092 3.1E-07 52.3 3.5 23 130-152 22-44 (190)
409 2g6b_A RAS-related protein RAB 95.4 0.0093 3.2E-07 51.5 3.5 23 130-152 11-33 (180)
410 3b9p_A CG5977-PA, isoform A; A 95.4 0.01 3.4E-07 56.4 4.0 25 128-152 53-77 (297)
411 1m8p_A Sulfate adenylyltransfe 95.4 0.012 4E-07 61.8 4.8 40 127-166 394-434 (573)
412 1x6v_B Bifunctional 3'-phospho 95.4 0.011 3.7E-07 62.5 4.5 37 128-164 51-87 (630)
413 1e9r_A Conjugal transfer prote 95.4 0.013 4.3E-07 59.2 5.0 38 129-166 53-90 (437)
414 3pqc_A Probable GTP-binding pr 95.4 0.0096 3.3E-07 52.1 3.6 25 128-152 22-46 (195)
415 2hxs_A RAB-26, RAS-related pro 95.3 0.0085 2.9E-07 51.7 3.2 23 130-152 7-29 (178)
416 3tw8_B RAS-related protein RAB 95.3 0.0059 2E-07 52.7 2.1 23 130-152 10-32 (181)
417 2qby_B CDC6 homolog 3, cell di 95.3 0.016 5.6E-07 56.8 5.6 39 127-165 43-89 (384)
418 2efe_B Small GTP-binding prote 95.3 0.01 3.4E-07 51.4 3.6 23 130-152 13-35 (181)
419 3bwd_D RAC-like GTP-binding pr 95.3 0.012 4.1E-07 50.9 4.0 25 128-152 7-31 (182)
420 2bme_A RAB4A, RAS-related prot 95.3 0.0092 3.1E-07 51.9 3.2 23 130-152 11-33 (186)
421 1nrj_B SR-beta, signal recogni 95.3 0.012 4.2E-07 52.9 4.1 25 128-152 11-35 (218)
422 3io3_A DEHA2D07832P; chaperone 95.3 0.017 5.7E-07 56.8 5.4 40 130-169 19-60 (348)
423 3kkq_A RAS-related protein M-R 95.3 0.01 3.6E-07 51.5 3.5 23 130-152 19-41 (183)
424 3ihw_A Centg3; RAS, centaurin, 95.3 0.011 3.6E-07 52.1 3.6 22 131-152 22-43 (184)
425 3syl_A Protein CBBX; photosynt 95.3 0.018 6.3E-07 54.8 5.5 29 127-155 65-93 (309)
426 1m7b_A RND3/RHOE small GTP-bin 95.3 0.0097 3.3E-07 52.0 3.2 23 130-152 8-30 (184)
427 3tkl_A RAS-related protein RAB 95.2 0.011 3.7E-07 52.0 3.5 22 131-152 18-39 (196)
428 2gf9_A RAS-related protein RAB 95.2 0.011 3.7E-07 51.9 3.5 22 131-152 24-45 (189)
429 2cxx_A Probable GTP-binding pr 95.2 0.0073 2.5E-07 52.7 2.3 22 131-152 3-24 (190)
430 2fg5_A RAB-22B, RAS-related pr 95.2 0.01 3.5E-07 52.3 3.3 23 130-152 24-46 (192)
431 1fzq_A ADP-ribosylation factor 95.2 0.006 2.1E-07 53.4 1.7 25 128-152 15-39 (181)
432 3lxw_A GTPase IMAP family memb 95.2 0.0091 3.1E-07 55.5 3.0 23 130-152 22-44 (247)
433 1vg8_A RAS-related protein RAB 95.2 0.011 3.9E-07 52.4 3.6 23 130-152 9-31 (207)
434 1mh1_A RAC1; GTP-binding, GTPa 95.2 0.012 4E-07 51.1 3.5 22 131-152 7-28 (186)
435 2bjv_A PSP operon transcriptio 95.2 0.012 4.1E-07 55.0 3.8 25 129-153 29-53 (265)
436 2vhj_A Ntpase P4, P4; non- hyd 95.2 0.0061 2.1E-07 59.1 1.8 38 126-166 120-157 (331)
437 3dz8_A RAS-related protein RAB 95.1 0.011 3.7E-07 52.1 3.2 22 131-152 25-46 (191)
438 1z06_A RAS-related protein RAB 95.1 0.012 4.2E-07 51.5 3.6 23 130-152 21-43 (189)
439 3u61_B DNA polymerase accessor 95.1 0.071 2.4E-06 51.1 9.3 39 237-275 105-145 (324)
440 2bov_A RAla, RAS-related prote 95.1 0.012 4.1E-07 52.1 3.5 23 130-152 15-37 (206)
441 3sr0_A Adenylate kinase; phosp 95.1 0.011 3.8E-07 53.5 3.3 22 131-152 2-23 (206)
442 3cmu_A Protein RECA, recombina 95.1 0.014 4.8E-07 69.0 4.9 43 126-168 1424-1466(2050)
443 1q57_A DNA primase/helicase; d 95.1 0.014 4.7E-07 60.2 4.4 43 126-168 239-282 (503)
444 2a5j_A RAS-related protein RAB 95.1 0.013 4.3E-07 51.6 3.5 22 131-152 23-44 (191)
445 2gf0_A GTP-binding protein DI- 95.1 0.012 4E-07 51.9 3.3 24 129-152 8-31 (199)
446 3iby_A Ferrous iron transport 95.1 0.0098 3.3E-07 55.7 2.9 23 130-152 2-24 (256)
447 3oes_A GTPase rhebl1; small GT 95.1 0.012 4E-07 52.4 3.2 26 127-152 22-47 (201)
448 3t5g_A GTP-binding protein RHE 95.1 0.012 4.1E-07 51.0 3.2 23 130-152 7-29 (181)
449 3b1v_A Ferrous iron uptake tra 95.1 0.0097 3.3E-07 56.3 2.8 23 130-152 4-26 (272)
450 3t15_A Ribulose bisphosphate c 95.1 0.024 8.1E-07 54.1 5.6 24 129-152 36-59 (293)
451 1zd9_A ADP-ribosylation factor 95.1 0.013 4.5E-07 51.4 3.5 25 128-152 21-45 (188)
452 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.026 9E-07 52.1 5.7 26 127-152 37-62 (262)
453 3zvl_A Bifunctional polynucleo 95.0 0.015 5.2E-07 58.5 4.3 26 127-152 256-281 (416)
454 1x3s_A RAS-related protein RAB 95.0 0.014 4.6E-07 51.2 3.5 23 130-152 16-38 (195)
455 2qmh_A HPR kinase/phosphorylas 95.0 0.012 4.1E-07 53.0 3.1 26 127-152 32-57 (205)
456 3a8t_A Adenylate isopentenyltr 95.0 0.012 4.2E-07 57.3 3.4 37 127-168 38-74 (339)
457 1ltq_A Polynucleotide kinase; 95.0 0.012 4.2E-07 56.0 3.4 23 130-152 3-25 (301)
458 3hjn_A DTMP kinase, thymidylat 95.0 0.032 1.1E-06 50.0 6.0 35 131-165 2-36 (197)
459 2atv_A RERG, RAS-like estrogen 95.0 0.015 5E-07 51.4 3.6 24 129-152 28-51 (196)
460 3reg_A RHO-like small GTPase; 95.0 0.014 4.9E-07 51.3 3.5 23 130-152 24-46 (194)
461 2ew1_A RAS-related protein RAB 95.0 0.013 4.4E-07 52.5 3.2 23 130-152 27-49 (201)
462 2p5s_A RAS and EF-hand domain 95.0 0.014 4.9E-07 51.7 3.5 25 128-152 27-51 (199)
463 3llm_A ATP-dependent RNA helic 94.9 0.015 5E-07 53.5 3.6 27 126-152 73-99 (235)
464 1zbd_A Rabphilin-3A; G protein 94.9 0.013 4.3E-07 52.0 3.0 23 130-152 9-31 (203)
465 2cjw_A GTP-binding protein GEM 94.9 0.015 5.2E-07 51.4 3.5 23 130-152 7-29 (192)
466 2bcg_Y Protein YP2, GTP-bindin 94.9 0.014 4.8E-07 51.9 3.2 23 130-152 9-31 (206)
467 3c5c_A RAS-like protein 12; GD 94.9 0.016 5.5E-07 50.9 3.6 23 130-152 22-44 (187)
468 1ksh_A ARF-like protein 2; sma 94.9 0.011 3.8E-07 51.5 2.5 25 128-152 17-41 (186)
469 2e87_A Hypothetical protein PH 94.9 0.01 3.5E-07 58.3 2.5 26 127-152 165-190 (357)
470 3exa_A TRNA delta(2)-isopenten 94.9 0.014 4.8E-07 56.3 3.3 24 129-152 3-26 (322)
471 1jwy_B Dynamin A GTPase domain 94.9 0.012 4.1E-07 56.4 2.9 26 127-152 22-47 (315)
472 3cph_A RAS-related protein SEC 94.8 0.016 5.5E-07 51.6 3.5 26 127-152 18-43 (213)
473 3cmw_A Protein RECA, recombina 94.8 0.021 7E-07 66.7 5.1 47 126-172 729-775 (1706)
474 1gwn_A RHO-related GTP-binding 94.8 0.015 5.2E-07 52.1 3.2 23 130-152 29-51 (205)
475 1moz_A ARL1, ADP-ribosylation 94.8 0.0098 3.4E-07 51.6 1.9 24 128-151 17-40 (183)
476 2fv8_A H6, RHO-related GTP-bin 94.8 0.016 5.3E-07 51.8 3.3 24 129-152 25-48 (207)
477 1zj6_A ADP-ribosylation factor 94.8 0.013 4.5E-07 51.2 2.7 23 129-151 16-38 (187)
478 2iwr_A Centaurin gamma 1; ANK 94.8 0.013 4.6E-07 50.5 2.7 23 130-152 8-30 (178)
479 4hlc_A DTMP kinase, thymidylat 94.7 0.032 1.1E-06 50.4 5.2 33 129-162 2-34 (205)
480 3foz_A TRNA delta(2)-isopenten 94.7 0.032 1.1E-06 53.7 5.5 24 129-152 10-33 (316)
481 2h17_A ADP-ribosylation factor 94.7 0.012 4.1E-07 51.3 2.3 25 128-152 20-44 (181)
482 2o52_A RAS-related protein RAB 94.7 0.013 4.3E-07 52.2 2.5 23 130-152 26-48 (200)
483 2woj_A ATPase GET3; tail-ancho 94.7 0.029 9.8E-07 55.2 5.2 42 130-172 19-62 (354)
484 3cbq_A GTP-binding protein REM 94.7 0.0094 3.2E-07 53.0 1.5 23 130-152 24-46 (195)
485 1wf3_A GTP-binding protein; GT 94.7 0.015 5.1E-07 55.8 3.0 22 131-152 9-30 (301)
486 2fh5_B SR-beta, signal recogni 94.7 0.019 6.5E-07 51.4 3.5 24 129-152 7-30 (214)
487 1c9k_A COBU, adenosylcobinamid 94.6 0.015 5E-07 51.6 2.6 32 131-166 1-32 (180)
488 2gco_A H9, RHO-related GTP-bin 94.6 0.018 6.1E-07 51.2 3.2 22 131-152 27-48 (201)
489 1g8f_A Sulfate adenylyltransfe 94.6 0.017 5.8E-07 59.6 3.4 41 127-167 393-435 (511)
490 2fu5_C RAS-related protein RAB 94.6 0.012 4E-07 51.2 1.9 23 130-152 9-31 (183)
491 2il1_A RAB12; G-protein, GDP, 94.6 0.012 4E-07 52.0 2.0 22 131-152 28-49 (192)
492 2xtp_A GTPase IMAP family memb 94.6 0.015 5.1E-07 54.2 2.7 24 129-152 22-45 (260)
493 1ofh_A ATP-dependent HSL prote 94.6 0.034 1.2E-06 52.7 5.3 25 128-152 49-73 (310)
494 2atx_A Small GTP binding prote 94.6 0.019 6.6E-07 50.4 3.3 22 131-152 20-41 (194)
495 3llu_A RAS-related GTP-binding 94.6 0.015 5.1E-07 51.5 2.5 25 128-152 19-43 (196)
496 2f7s_A C25KG, RAS-related prot 94.6 0.016 5.6E-07 51.9 2.8 22 131-152 27-48 (217)
497 3t5d_A Septin-7; GTP-binding p 94.5 0.012 4E-07 55.6 1.9 22 131-152 10-31 (274)
498 1ypw_A Transitional endoplasmi 94.5 0.015 5E-07 63.6 2.9 30 123-152 505-534 (806)
499 4dhe_A Probable GTP-binding pr 94.5 0.0092 3.2E-07 53.8 1.1 26 127-152 27-52 (223)
500 2h57_A ADP-ribosylation factor 94.5 0.01 3.5E-07 52.1 1.3 25 128-152 20-44 (190)
No 1
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-58 Score=473.64 Aligned_cols=396 Identities=28% Similarity=0.474 Sum_probs=309.8
Q ss_pred CCCceEEEEeCCCCeEEEEEcC-eeEEEEEEeeeEEEeceecCCCCeEEeCCCCeEEEEeeeCcEEEEeeccceeee---
Q 013511 18 SASTIKQVKLERESELRIEVGE-MPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEMDGTPETDYT--- 93 (441)
Q Consensus 18 ~~~~~~~~~l~~~~e~r~e~~~-~~~~i~l~~G~aeifG~eL~~~~~~~~~~~~~~~i~t~~g~~l~i~g~~~~~y~--- 93 (441)
++++.|+++|++++|||||+++ ++++|+|++|.|||||+||..+.+|+| .+.++++|+|++|++++++..+.+|+
T Consensus 34 ~~~~~~~~~l~~~~e~R~ev~~~~~~~i~l~~g~~~i~G~~L~~~~~~t~-g~~~~~i~~~~~~~l~i~~~~~~e~~~~~ 112 (460)
T 2npi_A 34 GDNEWHKLVIPKGSDWQIDLKAEGKLIVKVNSGIVEIFGTELAVDDEYTF-QNWKFPIYAVEETELLWKCPDLTTNTITV 112 (460)
T ss_dssp CCSSCEEEECCTTEECCEECCTTCEEEEEEEESCEEETTEECCBTSEEEE-ESCEECCEESSSCEEEEECTTCCSSSCCC
T ss_pred CCCCcEEEEeCCCcEEEEEECCCCeEEEEEeeeEEEEEEEEecCCCeEEE-cceEEEEEEEcceEEEEecCCccceeecC
Confidence 5667899999999999999998 999999999999999999999999999 67889999999999999999888998
Q ss_pred eCCCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCC-ccEEEeccCCCCcc
Q 013511 94 ADETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGW-KPTFVDLDIGQGAI 172 (441)
Q Consensus 94 ~~~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~-~~~~vDldp~~G~i 172 (441)
+.+++|+++.|+++.|++ +++++.+|++++|+||||||||||+|+|+|++...+. +|+++|.++.++..
T Consensus 113 ~~~~~mi~~~nl~~~y~~----------vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~ 182 (460)
T 2npi_A 113 KPNHTMKYIYNLHFMLEK----------IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIF 182 (460)
T ss_dssp EECCTHHHHHHHHHHHHH----------HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSS
T ss_pred CCCcchhhhhhhhehhhc----------CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCee
Confidence 778999999999999974 4566789999999999999999999999999888777 89999999988877
Q ss_pred cCCceeeeeeccCcCCCCCC-C-----------CcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeee
Q 013511 173 TIPGCIAATPIELPIDPVEG-I-----------PLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG 240 (441)
Q Consensus 173 ~~~G~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~ 240 (441)
.+++...+......++.... + ....+...+++..+..++-.++.-...+++-...++|..+.+-+.++
T Consensus 183 ~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sG 262 (460)
T 2npi_A 183 TVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSG 262 (460)
T ss_dssp SCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSC
T ss_pred eeccchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcce
Confidence 88887643322211111110 1 11223345566555544555555555555555555566666656677
Q ss_pred EEEeC--CCCCCchhHHHHHHHHHHcCCCEEEEeCCch--hhHHHHHHhcCCCC-----eEEEEecCCCCeeeCChHHHH
Q 013511 241 MVINT--MGWIEGVGYELLLHAIDTFKANVVLVLGQEK--LFSMLRDVLKNRPN-----VDVVKLQKSGGVVSRNSKVRQ 311 (441)
Q Consensus 241 lIlDE--~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~--l~~~l~~~~~~~~~-----v~vl~l~~~g~vv~~~~~~~~ 311 (441)
+|+|| ++++|+. ++.+.+++++++.+.|+++++.+ ++.++. .+++|+ +.++ +++|+++..+.....
T Consensus 263 LlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~--~~~~dr~~~~~vi~l--~k~G~iv~g~~~~~~ 337 (460)
T 2npi_A 263 CIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVK--KTFGPELGNNNIFFI--PKLDGVSAVDDVYKR 337 (460)
T ss_dssp EEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHH--HHHHHHHCGGGEEEE--CCCTTCCCCCHHHHH
T ss_pred EEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHH--HHhcccccCCEEEEE--eCCCcEEECCHHHHh
Confidence 99999 5779998 88899999998776555554434 332222 223465 6666 338888844445555
Q ss_pred HHHHHHHHHHhcCCCC-CCCceeEEeecCceEEEEEcCCCCCCCcCccCCCCCCCCCceEEec-CCChhccccEEEEEec
Q 013511 312 KARSYRIREYFYGLTN-DLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPV-NVDQELLHLVLAVSYA 389 (441)
Q Consensus 312 ~~r~~~~~~yf~g~~~-~l~p~~~~~~~~~l~~~~~~~~~~~p~s~lp~g~~~~~~~~~~~~v-~~s~~l~~~ilav~~~ 389 (441)
..+...+++||+|..+ .|.|+..+++|+++.+|+++.++.. ....+.+.+. +|+.+|+|+|+||+++
T Consensus 338 ~~~~~~i~~~f~g~~~~~l~p~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~~~p~~~~~~~l~~~ilav~~~ 406 (460)
T 2npi_A 338 SLQRTSIREYFYGSLDTALSPYAIGVDYEDLTIWKPSNVFDN-----------EVGRVELFPVTITPSNLQHAIIAITFA 406 (460)
T ss_dssp HHHHHHHHHHHHCCTTTCBCCEEEEEESTTCCEEEECCSTTT-----------SSCCSCEEECCCCHHHHTTEEEEEESS
T ss_pred hhhHHHHHHHhCCCCCCCcCCccEEEecCCeEEEEecCCCCC-----------CCCceeeecCCCCChhhhCcEEEEEec
Confidence 5667789999999764 8999999999999999999753221 0112344454 5678999999999999
Q ss_pred CC---hhhhhccCceEEEEEEEeecCCCeEEEEccCCCCCCCceEEeecccccc
Q 013511 390 KD---ADQIISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 440 (441)
Q Consensus 390 ~~---~~~~~~~~v~Gf~~V~~Vd~~~~~~~il~P~~~~lp~~~li~g~~~~~~ 440 (441)
+. .+++.+++++||++|.+||++++++++|+|+||+||++.|+||+++|+|
T Consensus 407 ~~~~~~~~v~~~~v~Gf~~v~~Vd~~~~~~~vl~p~~~~lp~~~l~~~~~~~~~ 460 (460)
T 2npi_A 407 ERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE 460 (460)
T ss_dssp CTTCCHHHHTTSCEEEEEEEEEEETTTTEEEEEESSSSCCCCSCEEEEEEECCC
T ss_pred CcCCCccccccccCccEEEEEEEEcCCCEEEEEcCCCCCCCCCceeeeeeEecC
Confidence 63 7889999999999999999999999999999999999999999999987
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.94 E-value=1.9e-30 Score=257.81 Aligned_cols=188 Identities=13% Similarity=0.173 Sum_probs=146.1
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|++++|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.
T Consensus 3 ~~l~i~~ls~~y~~~--~~L~~--vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl------------~~p~~G~I~i~G~ 66 (359)
T 3fvq_A 3 AALHIGHLSKSFQNT--PVLND--ISLSLDPGEILFIIGASGCGKTTLLRCLAGF------------EQPDSGEISLSGK 66 (359)
T ss_dssp CCEEEEEEEEEETTE--EEEEE--EEEEECTTCEEEEEESTTSSHHHHHHHHHTS------------SCCSEEEEEETTE
T ss_pred cEEEEEeEEEEECCE--EEEEe--eEEEEcCCCEEEEECCCCchHHHHHHHHhcC------------CCCCCcEEEECCE
Confidence 367888999999765 47766 9999999999999999999999999999999 9999999999998
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----------HHHHH---------HHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----------LVKEL---------AQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----------~~~~l---------~~~~~~~ls~g~~~r 237 (441)
............+..+.+.+|...+|+++|+.+|+.++.. .+.++ .++....||+||+||
T Consensus 67 ~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QR 146 (359)
T 3fvq_A 67 TIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQR 146 (359)
T ss_dssp EEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHH
T ss_pred ECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHH
Confidence 7632111111112334444555578999999999987531 12222 233456799999999
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+++ +|+|| +++||+..++.+.+.+.++. ..++|++||| +..+.+.||++.++ ++|.++
T Consensus 147 ValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd-----~~ea~~~aDri~vl---~~G~i~ 218 (359)
T 3fvq_A 147 AALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD-----REEALQYADRIAVM---KQGRIL 218 (359)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC-----HHHHHHHCSEEEEE---ETTEEE
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHHCCEEEEE---ECCEEE
Confidence 876 99999 99999999888877655542 2499999999 88888889999999 899998
Q ss_pred eCChHH
Q 013511 304 SRNSKV 309 (441)
Q Consensus 304 ~~~~~~ 309 (441)
..++..
T Consensus 219 ~~g~~~ 224 (359)
T 3fvq_A 219 QTASPH 224 (359)
T ss_dssp EEECHH
T ss_pred EEeCHH
Confidence 877643
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.94 E-value=5.3e-30 Score=256.37 Aligned_cols=183 Identities=17% Similarity=0.250 Sum_probs=147.5
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
++++++|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.
T Consensus 2 ~~l~~~~l~~~yg~~--~~L~~--vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl------------~~p~~G~I~i~G~ 65 (381)
T 3rlf_A 2 ASVQLQNVTKAWGEV--VVSKD--INLDIHEGEFVVFVGPSGCGKSTLLRMIAGL------------ETITSGDLFIGEK 65 (381)
T ss_dssp CCEEEEEEEEEETTE--EEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHHTS------------SCCSEEEEEETTE
T ss_pred CEEEEEeEEEEECCE--EEEee--eEEEECCCCEEEEEcCCCchHHHHHHHHHcC------------CCCCCeEEEECCE
Confidence 357788899999765 47766 9999999999999999999999999999999 9999999999998
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~r 237 (441)
...... +. +..+.+.+|...+|+++|+.+|+.++... +.++ .++....||+||+||
T Consensus 66 ~~~~~~--~~--~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQR 141 (381)
T 3rlf_A 66 RMNDTP--PA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQR 141 (381)
T ss_dssp ECTTCC--GG--GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHH
T ss_pred ECCCCC--HH--HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHH
Confidence 653211 11 23344545555789999999999887542 1111 123445799999999
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+++ +|+|| +++||+..++.+.+.|+++.. .++|++||+ +..+.+.||++.+| ++|.++
T Consensus 142 VaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd-----~~ea~~~aDri~vl---~~G~i~ 213 (381)
T 3rlf_A 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-----QVEAMTLADKIVVL---DAGRVA 213 (381)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC-----HHHHHHHCSEEEEE---ETTEEE
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHhCCEEEEE---ECCEEE
Confidence 876 99999 999999999999999988742 499999999 88888899999999 899998
Q ss_pred eCChH
Q 013511 304 SRNSK 308 (441)
Q Consensus 304 ~~~~~ 308 (441)
..++.
T Consensus 214 ~~g~~ 218 (381)
T 3rlf_A 214 QVGKP 218 (381)
T ss_dssp EEECH
T ss_pred EEeCH
Confidence 87753
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.94 E-value=2.8e-30 Score=256.81 Aligned_cols=192 Identities=19% Similarity=0.242 Sum_probs=149.5
Q ss_pred CCCCchhHHHHHHHHhhh--hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 95 DETPMVSYVNVNAVLEGR--RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 95 ~~~~ml~~~nl~~~~~~~--~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
..++|+++.|+++.|+.. ...++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~--vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL------------~~p~~G~I 85 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNN--VSLHVPAGQIYGVIGASGAGKSTLIRCVNLL------------ERPTEGSV 85 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHHTS------------SCCSEEEE
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEe--eEEEEcCCCEEEEEcCCCchHHHHHHHHhcC------------CCCCceEE
Confidence 345689999999999642 2347766 9999999999999999999999999999999 99999999
Q ss_pred cCCceeeeeeccCcC-CCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHHH---------HHHHHHhc
Q 013511 173 TIPGCIAATPIELPI-DPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKELA---------QMLERQFN 231 (441)
Q Consensus 173 ~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l~---------~~~~~~ls 231 (441)
.++|..........+ ..+..+++.+|...+++.+|+.+|+.+.... +.++. +++...||
T Consensus 86 ~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LS 165 (366)
T 3tui_C 86 LVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLS 165 (366)
T ss_dssp EETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSC
T ss_pred EECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCC
Confidence 999986643221111 0112344444445788999999999886432 11221 23345699
Q ss_pred cCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 232 GNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 232 ~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
+||+||+++ ||+|| |++||+..+..+++++++++. .+||++||+ +..+.+.||++.++
T Consensus 166 GGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd-----l~~~~~~aDrv~vl--- 237 (366)
T 3tui_C 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE-----MDVVKRICDCVAVI--- 237 (366)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC-----HHHHHHHCSEEEEE---
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-----HHHHHHhCCEEEEE---
Confidence 999999876 99999 999999999999999998852 399999999 88888889999999
Q ss_pred CCCCeeeCChH
Q 013511 298 KSGGVVSRNSK 308 (441)
Q Consensus 298 ~~g~vv~~~~~ 308 (441)
+.|.+++.++.
T Consensus 238 ~~G~iv~~g~~ 248 (366)
T 3tui_C 238 SNGELIEQDTV 248 (366)
T ss_dssp ETTEEEECCBH
T ss_pred ECCEEEEEcCH
Confidence 89999988864
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.94 E-value=3.4e-30 Score=248.32 Aligned_cols=188 Identities=16% Similarity=0.184 Sum_probs=144.5
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++|+++.|+++.|++.. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 5 ~~~l~i~~ls~~y~~~~-~~L~~--isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl------------~~p~~G~I~~~G 69 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGT-HALKG--INMNIKRGEVTAILGGNGVGKSTLFQNFNGI------------LKPSSGRILFDN 69 (275)
T ss_dssp CEEEEEEEEEEECTTSC-EEEEE--EEEEEETTSEEEEECCTTSSHHHHHHHHTTS------------SCCSEEEEEETT
T ss_pred CcEEEEEEEEEEECCCC-eEEEe--eEEEEcCCCEEEEECCCCCCHHHHHHHHHcC------------CCCCCeEEEECC
Confidence 34788899999997542 37766 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeec--cCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHHH---------HHHHHHhccCc
Q 013511 177 CIAATPI--ELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKELA---------QMLERQFNGNA 234 (441)
Q Consensus 177 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l~---------~~~~~~ls~g~ 234 (441)
....... ...+....++.+|.+...++ ..|+.+|+.++... +.++. ++....||+||
T Consensus 70 ~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq 148 (275)
T 3gfo_A 70 KPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQ 148 (275)
T ss_dssp EECCCSHHHHHHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred EECCcccccHHHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHH
Confidence 8652100 01112234455555433344 68999999886431 11111 22335699999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
+||+++ +|+|| +++||+..++.+.+++++++ ..+||+++|+ +..+.+.||++.++ ++|
T Consensus 149 kQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd-----l~~~~~~~drv~~l---~~G 220 (275)
T 3gfo_A 149 KKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD-----IDIVPLYCDNVFVM---KEG 220 (275)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESC-----CSSGGGGCSEEEEE---ETT
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecC-----HHHHHHhCCEEEEE---ECC
Confidence 999876 99999 99999999999999998875 3499999999 77777789999999 899
Q ss_pred CeeeCChH
Q 013511 301 GVVSRNSK 308 (441)
Q Consensus 301 ~vv~~~~~ 308 (441)
.++..++.
T Consensus 221 ~i~~~g~~ 228 (275)
T 3gfo_A 221 RVILQGNP 228 (275)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99887653
No 6
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.93 E-value=5.8e-29 Score=247.24 Aligned_cols=184 Identities=19% Similarity=0.253 Sum_probs=145.1
Q ss_pred CCchhHHHHHHHH-hhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 97 TPMVSYVNVNAVL-EGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 97 ~~ml~~~nl~~~~-~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
.+|+++.|+++.| ++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++
T Consensus 12 ~~~l~~~~l~~~y~g~~--~vl~~--vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl------------~~p~~G~I~i~ 75 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGA--RSVRG--VSFQIREGEMVGLLGPSGSGKTTILRLIAGL------------ERPTKGDVWIG 75 (355)
T ss_dssp CEEEEEEEEEECCTTST--TCEEE--EEEEEETTCEEEEECSTTSSHHHHHHHHHTS------------SCCSEEEEEET
T ss_pred CceEEEEEEEEEEcCCC--EEEee--eEEEECCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCccEEEEC
Confidence 3467788888888 654 46765 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHHH---------HHHHHHhccCcc
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKELA---------QMLERQFNGNAE 235 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l~---------~~~~~~ls~g~~ 235 (441)
|...... .+. +..+.+.++...+|+++|+.+|+.++... +.++. ++....||+||+
T Consensus 76 g~~i~~~--~~~--~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~ 151 (355)
T 1z47_A 76 GKRVTDL--PPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQ 151 (355)
T ss_dssp TEECTTC--CGG--GSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHH
T ss_pred CEECCcC--Chh--hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHH
Confidence 9765221 111 23344445555689999999999886432 11111 233456999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
||+++ +|+|| +++||+..++.+.+.|+++. ..++|++||+ +..+...||++.++ ++|.
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-----~~~a~~~adri~vl---~~G~ 223 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD-----QEEALEVADRVLVL---HEGN 223 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC-----HHHHHHHCSEEEEE---ETTE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-----HHHHHHhCCEEEEE---ECCE
Confidence 99876 99999 99999999999999998874 2489999999 88887889999999 8898
Q ss_pred eeeCChH
Q 013511 302 VVSRNSK 308 (441)
Q Consensus 302 vv~~~~~ 308 (441)
++..++.
T Consensus 224 i~~~g~~ 230 (355)
T 1z47_A 224 VEQFGTP 230 (355)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 8876653
No 7
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.93 E-value=7.9e-29 Score=248.27 Aligned_cols=184 Identities=19% Similarity=0.264 Sum_probs=145.3
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|..
T Consensus 3 ~l~~~~l~~~y~~~--~vl~~--vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl------------~~p~~G~I~i~g~~ 66 (372)
T 1g29_1 3 GVRLVDVWKVFGEV--TAVRE--MSLEVKDGEFMILLGPSGCGKTTTLRMIAGL------------EEPSRGQIYIGDKL 66 (372)
T ss_dssp EEEEEEEEEEETTE--EEEEE--EEEEEETTCEEEEECSTTSSHHHHHHHHHTS------------SCCSEEEEEETTEE
T ss_pred EEEEEeEEEEECCE--EEEee--eEEEEcCCCEEEEECCCCcHHHHHHHHHHcC------------CCCCccEEEECCEE
Confidence 56778888888764 46765 9999999999999999999999999999999 99999999999987
Q ss_pred eeeec----cCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHHH---------HHHHHHhccCc
Q 013511 179 AATPI----ELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKELA---------QMLERQFNGNA 234 (441)
Q Consensus 179 ~~~~~----~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l~---------~~~~~~ls~g~ 234 (441)
..... ..+. +..+.+.++...+|+++|+.+|+.++... +.++. ++....||+||
T Consensus 67 ~~~~~~~~~~~~~--~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq 144 (372)
T 1g29_1 67 VADPEKGIFVPPK--DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQ 144 (372)
T ss_dssp EEEGGGTEECCGG--GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHH
T ss_pred CccccccccCCHh--HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHH
Confidence 64310 0111 23455555555789999999999986432 11122 22335699999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
+||+++ +|+|| +++||+..++.+.+.|+++. ..++|++||+ +..+.+.||++.++ ++|
T Consensus 145 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-----~~~a~~~adri~vl---~~G 216 (372)
T 1g29_1 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-----QVEAMTMGDRIAVM---NRG 216 (372)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-----HHHHHHHCSEEEEE---ETT
T ss_pred HHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-----HHHHHHhCCEEEEE---eCC
Confidence 999876 99999 99999999999999998874 2489999999 88887889999999 889
Q ss_pred CeeeCChH
Q 013511 301 GVVSRNSK 308 (441)
Q Consensus 301 ~vv~~~~~ 308 (441)
.++..++.
T Consensus 217 ~i~~~g~~ 224 (372)
T 1g29_1 217 VLQQVGSP 224 (372)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCH
Confidence 88877653
No 8
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.93 E-value=6.4e-29 Score=247.72 Aligned_cols=182 Identities=16% Similarity=0.212 Sum_probs=144.5
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|..
T Consensus 3 ~l~~~~l~~~y~~~--~vl~~--vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl------------~~p~~G~I~i~g~~ 66 (362)
T 2it1_A 3 EIKLENIVKKFGNF--TALNN--INLKIKDGEFMALLGPSGSGKSTLLYTIAGI------------YKPTSGKIYFDEKD 66 (362)
T ss_dssp CEEEEEEEEESSSS--EEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHHTS------------SCCSEEEEEETTEE
T ss_pred EEEEEeEEEEECCE--EEEEe--eEEEECCCCEEEEECCCCchHHHHHHHHhcC------------CCCCceEEEECCEE
Confidence 57788888888754 46765 9999999999999999999999999999999 99999999999976
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHHH---------HHHHHHhccCcccee
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKELA---------QMLERQFNGNAESRA 238 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l~---------~~~~~~ls~g~~~r~ 238 (441)
..... +. +..+.+.++...+|+++|+.+|+.++... +.++. ++....||+||+||+
T Consensus 67 i~~~~--~~--~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv 142 (362)
T 2it1_A 67 VTELP--PK--DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRV 142 (362)
T ss_dssp CTTSC--GG--GTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHH
T ss_pred CCcCC--Hh--HCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHH
Confidence 52211 11 23444555555789999999999886432 11111 223356999999998
Q ss_pred ee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 239 AG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 239 ~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
++ +|+|| +++||+..++.+.+.|+++. ..++|++||+ +..+.+.||++.++ ++|.++.
T Consensus 143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-----~~~a~~~adri~vl---~~G~i~~ 214 (362)
T 2it1_A 143 AIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD-----QAEALAMADRIAVI---REGEILQ 214 (362)
T ss_dssp HHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-----HHHHHHHCSEEEEE---ETTEEEE
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC-----HHHHHHhCCEEEEE---ECCEEEE
Confidence 76 99999 99999999999999998874 2489999999 88887889999999 8899887
Q ss_pred CChH
Q 013511 305 RNSK 308 (441)
Q Consensus 305 ~~~~ 308 (441)
.++.
T Consensus 215 ~g~~ 218 (362)
T 2it1_A 215 VGTP 218 (362)
T ss_dssp EECH
T ss_pred EcCH
Confidence 7653
No 9
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.93 E-value=5e-29 Score=248.24 Aligned_cols=182 Identities=16% Similarity=0.223 Sum_probs=144.6
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|..
T Consensus 3 ~l~~~~l~~~y~~~--~vl~~--vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl------------~~p~~G~I~i~g~~ 66 (359)
T 2yyz_A 3 SIRVVNLKKYFGKV--KAVDG--VSFEVKDGEFVALLGPSGCGKTTTLLMLAGI------------YKPTSGEIYFDDVL 66 (359)
T ss_dssp CEEEEEEEEEETTE--EEEEE--EEEEECTTCEEEEECSTTSSHHHHHHHHHTS------------SCCSEEEEEETTEE
T ss_pred EEEEEEEEEEECCE--EEEee--eEEEEcCCCEEEEEcCCCchHHHHHHHHHCC------------CCCCccEEEECCEE
Confidence 57788888888764 46765 9999999999999999999999999999999 99999999999976
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----------HHHHHH---------HHHHHHhccCcccee
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----------LVKELA---------QMLERQFNGNAESRA 238 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----------~~~~l~---------~~~~~~ls~g~~~r~ 238 (441)
..... + .+..+.+.++...+|+++|+.+|+.++.. .+.++. ++....||+||+||+
T Consensus 67 i~~~~--~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRv 142 (359)
T 2yyz_A 67 VNDIP--P--KYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRV 142 (359)
T ss_dssp CTTSC--G--GGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH
T ss_pred CCCCC--h--hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 52211 1 12345555555578999999999987531 122222 233457999999998
Q ss_pred ee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 239 AG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 239 ~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
++ +|+|| +++||+..++.+.+.|+++. ..++|++||+ +..+.+.||++.++ +.|.++.
T Consensus 143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-----~~~~~~~adri~vl---~~G~i~~ 214 (359)
T 2yyz_A 143 ALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD-----QAEAMTMASRIAVF---NQGKLVQ 214 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC-----HHHHHHHCSEEEEE---ETTEEEE
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-----HHHHHHhCCEEEEE---ECCEEEE
Confidence 76 99999 99999999999999998874 2489999999 88877889999999 8898887
Q ss_pred CChH
Q 013511 305 RNSK 308 (441)
Q Consensus 305 ~~~~ 308 (441)
.++.
T Consensus 215 ~g~~ 218 (359)
T 2yyz_A 215 YGTP 218 (359)
T ss_dssp EECH
T ss_pred eCCH
Confidence 7653
No 10
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.93 E-value=7.8e-29 Score=247.96 Aligned_cols=184 Identities=15% Similarity=0.186 Sum_probs=141.4
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
+.|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|
T Consensus 9 M~~l~~~~l~~~y~~~--~vl~~--vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl------------~~p~~G~I~i~g 72 (372)
T 1v43_A 9 MVEVKLENLTKRFGNF--TAVNK--LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL------------EEPTEGRIYFGD 72 (372)
T ss_dssp CCCEEEEEEEEEETTE--EEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHHTS------------SCCSEEEEEETT
T ss_pred eeeEEEEEEEEEECCE--EEEee--eEEEECCCCEEEEECCCCChHHHHHHHHHcC------------CCCCceEEEECC
Confidence 4468889999999764 46765 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----------HHHHHH---------HHHHHHhccCccc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----------LVKELA---------QMLERQFNGNAES 236 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----------~~~~l~---------~~~~~~ls~g~~~ 236 (441)
....... + .+..+.+.++...+|+++|+.+|+.++.. .+.++. ++....||+||+|
T Consensus 73 ~~i~~~~--~--~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~Q 148 (372)
T 1v43_A 73 RDVTYLP--P--KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQ 148 (372)
T ss_dssp EECTTSC--G--GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHH
T ss_pred EECCCCC--h--hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHH
Confidence 7642211 1 12345555555678999999999987521 112222 2334569999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
|+++ +|+|| +++||+..++.+.+.|+++.. .++|++||+ +..+.+.||++.++ ++|.+
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-----~~~a~~~adri~vl---~~G~i 220 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-----QVEAMTMGDRIAVM---NRGQL 220 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-----HHHHHHHCSEEEEE---ETTEE
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEE
Confidence 9876 99999 999999999999999988742 489999999 88887889999999 88988
Q ss_pred eeCChH
Q 013511 303 VSRNSK 308 (441)
Q Consensus 303 v~~~~~ 308 (441)
+..++.
T Consensus 221 ~~~g~~ 226 (372)
T 1v43_A 221 LQIGSP 226 (372)
T ss_dssp EEEECH
T ss_pred EEeCCH
Confidence 876653
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.93 E-value=4.4e-28 Score=232.19 Aligned_cols=185 Identities=19% Similarity=0.249 Sum_probs=141.9
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.
T Consensus 23 ~~l~i~~l~~~y~~~--~vL~~--vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl------------~~p~~G~I~~~g~ 86 (263)
T 2olj_A 23 QMIDVHQLKKSFGSL--EVLKG--INVHIREGEVVVVIGPSGSGKSTFLRCLNLL------------EDFDEGEIIIDGI 86 (263)
T ss_dssp CSEEEEEEEEEETTE--EEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHTTS------------SCCSEEEEEETTE
T ss_pred heEEEEeEEEEECCE--EEEEe--eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC------------CCCCCcEEEECCE
Confidence 378999999999764 46765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcC-CCCCCCCcccceEEEecccCccCCHHHHH-H-----------HHHHHH---------HHHHHHhccCcc
Q 013511 178 IAATPIELPI-DPVEGIPLEMPLVYFFGHATPSNNVELYK-V-----------LVKELA---------QMLERQFNGNAE 235 (441)
Q Consensus 178 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~-~-----------~~~~l~---------~~~~~~ls~g~~ 235 (441)
... ...... ..+..+.+.++...+|+.+|+.+|+.++. . .+.++. ++....||+||+
T Consensus 87 ~i~-~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqk 165 (263)
T 2olj_A 87 NLK-AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQA 165 (263)
T ss_dssp ESS-STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHH
T ss_pred ECC-CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHH
Confidence 542 101000 00112334444446788899999998753 1 011111 122346999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
||+++ +|+|| +++||+..++.+.+++++++. .+||++||+ +..+.+.||++.++ +.|.+
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd-----~~~~~~~~d~v~~l---~~G~i 237 (263)
T 2olj_A 166 QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE-----MGFAREVGDRVLFM---DGGYI 237 (263)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHCSEEEEE---ETTEE
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHhCCEEEEE---ECCEE
Confidence 99876 99999 999999999999999988743 499999999 77777789999998 88888
Q ss_pred eeCCh
Q 013511 303 VSRNS 307 (441)
Q Consensus 303 v~~~~ 307 (441)
+..+.
T Consensus 238 ~~~g~ 242 (263)
T 2olj_A 238 IEEGK 242 (263)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 87654
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=1.4e-28 Score=234.76 Aligned_cols=185 Identities=10% Similarity=0.119 Sum_probs=142.9
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
.++++++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++
T Consensus 12 ~~~~l~i~~l~~~y~~~--~vl~~--vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl------------~~p~~G~I~~~ 75 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKK--EILKG--ISFEIEEGEIFGLIGPNGAGKTTTLRIISTL------------IKPSSGIVTVF 75 (256)
T ss_dssp --CCEEEEEEEEEETTE--EEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHTTS------------SCCSEEEEEET
T ss_pred cCCeEEEEEEEEEECCE--EEEEe--eEEEEcCCcEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEEC
Confidence 46788899999999754 46765 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHHHH---------HHHHHhccCcc
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKELAQ---------MLERQFNGNAE 235 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l~~---------~~~~~ls~g~~ 235 (441)
|...... .... ...+.+.++...+++.+|+.+|+.++... +.++.+ +....||+||+
T Consensus 76 g~~~~~~-~~~~--~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~ 152 (256)
T 1vpl_A 76 GKNVVEE-PHEV--RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMV 152 (256)
T ss_dssp TEETTTC-HHHH--HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHH
T ss_pred CEECCcc-HHHH--hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHH
Confidence 9754211 0111 12344444444678889999999876421 111111 12245999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
||+++ +|+|| +++||+..++.+.++|++++ ..+||++||+ +..+...||++.++ +.|.+
T Consensus 153 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd-----~~~~~~~~d~v~~l---~~G~i 224 (256)
T 1vpl_A 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN-----MLEVEFLCDRIALI---HNGTI 224 (256)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECC-----HHHHTTTCSEEEEE---ETTEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHCCEEEEE---ECCEE
Confidence 99876 99999 99999999999999998874 2489999999 88887889999998 88888
Q ss_pred eeCCh
Q 013511 303 VSRNS 307 (441)
Q Consensus 303 v~~~~ 307 (441)
+..++
T Consensus 225 ~~~g~ 229 (256)
T 1vpl_A 225 VETGT 229 (256)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 87654
No 13
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.92 E-value=7e-29 Score=247.13 Aligned_cols=184 Identities=17% Similarity=0.249 Sum_probs=145.2
Q ss_pred chhHHHHHHHHhhhhhh--hccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 99 MVSYVNVNAVLEGRRNH--AKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~--~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
|+++.|+++.|++. . ++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 3 ~l~i~~l~~~y~~~--~~~vl~~--vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl------------~~p~~G~I~i~g 66 (353)
T 1oxx_K 3 RIIVKNVSKVFKKG--KVVALDN--VNINIENGERFGILGPSGAGKTTFMRIIAGL------------DVPSTGELYFDD 66 (353)
T ss_dssp CEEEEEEEEEEGGG--TEEEEEE--EEEEECTTCEEEEECSCHHHHHHHHHHHHTS------------SCCSEEEEEETT
T ss_pred EEEEEeEEEEECCE--eeeeEec--eEEEECCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCceEEEECC
Confidence 67788888899764 4 6765 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeec---cCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----------HHHHHH---------HHHHHHhccC
Q 013511 177 CIAATPI---ELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----------LVKELA---------QMLERQFNGN 233 (441)
Q Consensus 177 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----------~~~~l~---------~~~~~~ls~g 233 (441)
....... ..+. +..+.+.++...+|+++|+.+|+.++.. .+.++. ++....||+|
T Consensus 67 ~~i~~~~~~~~~~~--~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGG 144 (353)
T 1oxx_K 67 RLVASNGKLIVPPE--DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGA 144 (353)
T ss_dssp EEEEETTEESSCGG--GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHH
T ss_pred EECcccccccCChh--hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHH
Confidence 8764310 1111 2334444555568999999999987532 111221 2334569999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
|+||+++ +|+|| +++||+..++.+.+.|+++. ..++|++||+ +..+.+.||++.++ ++
T Consensus 145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-----~~~~~~~adri~vl---~~ 216 (353)
T 1oxx_K 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-----PADIFAIADRVGVL---VK 216 (353)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-----HHHHHHHCSEEEEE---ET
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---EC
Confidence 9999876 99999 99999999999999998874 2489999999 88887889999999 88
Q ss_pred CCeeeCChH
Q 013511 300 GGVVSRNSK 308 (441)
Q Consensus 300 g~vv~~~~~ 308 (441)
|.++..++.
T Consensus 217 G~i~~~g~~ 225 (353)
T 1oxx_K 217 GKLVQVGKP 225 (353)
T ss_dssp TEEEEEECH
T ss_pred CEEEEEcCH
Confidence 988876653
No 14
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.92 E-value=1.1e-28 Score=244.83 Aligned_cols=181 Identities=15% Similarity=0.210 Sum_probs=142.8
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. ++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|..
T Consensus 1 ml~~~~l~~~y~~~---~l~~--vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl------------~~p~~G~I~~~g~~ 63 (348)
T 3d31_A 1 MIEIESLSRKWKNF---SLDN--LSLKVESGEYFVILGPTGAGKTLFLELIAGF------------HVPDSGRILLDGKD 63 (348)
T ss_dssp CEEEEEEEEECSSC---EEEE--EEEEECTTCEEEEECCCTHHHHHHHHHHHTS------------SCCSEEEEEETTEE
T ss_pred CEEEEEEEEEECCE---EEee--eEEEEcCCCEEEEECCCCccHHHHHHHHHcC------------CCCCCcEEEECCEE
Confidence 45667888888653 6665 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------HHHHH---------HHHHHHhccCccceeee-
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------VKELA---------QMLERQFNGNAESRAAG- 240 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------~~~l~---------~~~~~~ls~g~~~r~~~- 240 (441)
.... .+. +..+.+.++...+|+++|+.+|+.++... +.++. ++....||+||+||+++
T Consensus 64 i~~~--~~~--~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalA 139 (348)
T 3d31_A 64 VTDL--SPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALA 139 (348)
T ss_dssp CTTS--CHH--HHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHH
T ss_pred CCCC--chh--hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 4211 111 12344444555789999999999986532 12222 23345699999999876
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+|| +++||+..++.+.+.|+++. ..++|++||+ +..+.+.||++.++ ++|.++..++
T Consensus 140 raL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd-----~~~~~~~adri~vl---~~G~i~~~g~ 211 (348)
T 3d31_A 140 RALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-----QTEARIMADRIAVV---MDGKLIQVGK 211 (348)
T ss_dssp HHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHCSEEEEE---SSSCEEEEEC
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEEEECC
Confidence 99999 99999999999999998874 2489999999 88777889999999 8999987765
Q ss_pred H
Q 013511 308 K 308 (441)
Q Consensus 308 ~ 308 (441)
.
T Consensus 212 ~ 212 (348)
T 3d31_A 212 P 212 (348)
T ss_dssp H
T ss_pred H
Confidence 3
No 15
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.92 E-value=9.7e-29 Score=236.95 Aligned_cols=186 Identities=13% Similarity=0.148 Sum_probs=142.1
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.
T Consensus 5 ~~l~i~~l~~~y~~~--~vl~~--vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl------------~~p~~G~i~~~g~ 68 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGH--EVLKG--VSLQARAGDVISIIGSSGSGKSTFLRCINFL------------EKPSEGAIIVNGQ 68 (262)
T ss_dssp CCEEEEEEEEEETTE--EEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHTTS------------SCCSEEEEEETTE
T ss_pred ceEEEeeEEEEECCE--EEEEe--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCE
Confidence 478889999999764 46765 9999999999999999999999999999999 9999999999997
Q ss_pred eeee----------eccCc-CCCCCCCCcccceEEEecccCccCCHHHHH-H-----------HHHHH----------HH
Q 013511 178 IAAT----------PIELP-IDPVEGIPLEMPLVYFFGHATPSNNVELYK-V-----------LVKEL----------AQ 224 (441)
Q Consensus 178 ~~~~----------~~~~~-~~~~~~~~~~~~~~~~~g~~tv~en~~~~~-~-----------~~~~l----------~~ 224 (441)
.... ..... ...+..+.+.++...+|+++|+.+|+.++. . .+.++ .+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 69 NINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp ECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred EccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 6421 00000 000112334444446788999999998743 1 11111 22
Q ss_pred HHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCe
Q 013511 225 MLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNV 291 (441)
Q Consensus 225 ~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v 291 (441)
+....||+||+||+++ +|+|| +++||+..++.+.+++++++. .+||++||+ +..+.+.||++
T Consensus 149 ~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd-----~~~~~~~~d~v 223 (262)
T 1b0u_A 149 KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE-----MGFARHVSSHV 223 (262)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC-----HHHHHHHCSEE
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEE
Confidence 2345699999999876 99999 999999999999999988743 389999999 77777789999
Q ss_pred EEEEecCCCCeeeCCh
Q 013511 292 DVVKLQKSGGVVSRNS 307 (441)
Q Consensus 292 ~vl~l~~~g~vv~~~~ 307 (441)
.++ ++|.++..++
T Consensus 224 ~~l---~~G~i~~~g~ 236 (262)
T 1b0u_A 224 IFL---HQGKIEEEGD 236 (262)
T ss_dssp EEE---ETTEEEEEEC
T ss_pred EEE---ECCEEEEeCC
Confidence 998 8888887654
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=2e-28 Score=231.81 Aligned_cols=186 Identities=16% Similarity=0.159 Sum_probs=142.1
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 4 ~~~l~~~~l~~~y~~~--~vl~~--vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g 67 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAI--HAIKG--IDLKVPRGQIVTLIGANGAGKTTTLSAIAGL------------VRAQKGKIIFNG 67 (240)
T ss_dssp SEEEEEEEEEEEETTE--EEEEE--EEEEEETTCEEEEECSTTSSHHHHHHHHTTS------------SCCSEEEEEETT
T ss_pred CceEEEEeEEEEECCe--eEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECC
Confidence 3478888999999764 46765 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH----------HHHHHHHHHH----------HHHhccCccc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK----------VLVKELAQML----------ERQFNGNAES 236 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~----------~~~~~l~~~~----------~~~ls~g~~~ 236 (441)
........... .+..+.+.++...+|+.+|+.||+.++. ..+.++.+.+ ...||+||+|
T Consensus 68 ~~~~~~~~~~~-~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~q 146 (240)
T 1ji0_A 68 QDITNKPAHVI-NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQ 146 (240)
T ss_dssp EECTTCCHHHH-HHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHH
T ss_pred EECCCCCHHHH-HhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHH
Confidence 75421110000 1123445555556788899999987742 1122222222 1348999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
|+++ +|+|| +++||+..++.+.+++++++ ..+||++||+ +..+.+.||++.++ ++|.++
T Consensus 147 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd-----~~~~~~~~d~v~~l---~~G~i~ 218 (240)
T 1ji0_A 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN-----ALGALKVAHYGYVL---ETGQIV 218 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC-----HHHHHHHCSEEEEE---ETTEEE
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC-----HHHHHHhCCEEEEE---ECCEEE
Confidence 8876 99999 99999999999999998874 3488999999 77777789999988 888888
Q ss_pred eCCh
Q 013511 304 SRNS 307 (441)
Q Consensus 304 ~~~~ 307 (441)
..++
T Consensus 219 ~~g~ 222 (240)
T 1ji0_A 219 LEGK 222 (240)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 7654
No 17
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.92 E-value=4e-28 Score=227.44 Aligned_cols=184 Identities=16% Similarity=0.172 Sum_probs=138.7
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.
T Consensus 3 ~~l~~~~l~~~y~~~--~~l~~--vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~ 66 (224)
T 2pcj_A 3 EILRAENIKKVIRGY--EILKG--ISLSVKKGEFVSIIGASGSGKSTLLYILGLL------------DAPTEGKVFLEGK 66 (224)
T ss_dssp EEEEEEEEEEEETTE--EEEEE--EEEEEETTCEEEEEECTTSCHHHHHHHHTTS------------SCCSEEEEEETTE
T ss_pred cEEEEEeEEEEECCE--eeEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECCE
Confidence 467888888888764 46765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcC-C-CCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHHHH---------HHHHHhccCcc
Q 013511 178 IAATPIELPI-D-PVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKELAQ---------MLERQFNGNAE 235 (441)
Q Consensus 178 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l~~---------~~~~~ls~g~~ 235 (441)
.......... . ....+.+.++...+++++|+.+|+.++... +.++.+ .....||+||+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~ 146 (224)
T 2pcj_A 67 EVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQ 146 (224)
T ss_dssp ECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHH
T ss_pred ECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence 5422110000 0 001234444444678889999999875421 111111 22346999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
||+++ +|+|| +++||+..++.+.+++++++ ..+||++||+ +... +.||++.++ ++|.+
T Consensus 147 qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd-----~~~~-~~~d~v~~l---~~G~i 217 (224)
T 2pcj_A 147 QRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE-----RELA-ELTHRTLEM---KDGKV 217 (224)
T ss_dssp HHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC-----HHHH-TTSSEEEEE---ETTEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC-----HHHH-HhCCEEEEE---ECCEE
Confidence 99876 99999 99999999999999998874 2499999999 6665 689999888 78887
Q ss_pred eeCC
Q 013511 303 VSRN 306 (441)
Q Consensus 303 v~~~ 306 (441)
+..+
T Consensus 218 ~~~g 221 (224)
T 2pcj_A 218 VGEI 221 (224)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7644
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.92 E-value=2.8e-28 Score=233.22 Aligned_cols=186 Identities=15% Similarity=0.153 Sum_probs=141.1
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 5 ~~~l~i~~l~~~y~~~--~vl~~--vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl------------~~p~~G~i~~~g 68 (257)
T 1g6h_A 5 MEILRTENIVKYFGEF--KALDG--VSISVNKGDVTLIIGPNGSGKSTLINVITGF------------LKADEGRVYFEN 68 (257)
T ss_dssp CEEEEEEEEEEEETTE--EEEEE--ECCEEETTCEEEEECSTTSSHHHHHHHHTTS------------SCCSEEEEEETT
T ss_pred CcEEEEeeeEEEECCE--eeEee--eEEEEeCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECC
Confidence 4578889999999764 46765 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------------------HHHHH---------
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------------------VKELA--------- 223 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------------------~~~l~--------- 223 (441)
.......... ..+..+.+.++...+|+++|+.||+.++... +.++.
T Consensus 69 ~~~~~~~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 147 (257)
T 1g6h_A 69 KDITNKEPAE-LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY 147 (257)
T ss_dssp EECTTCCHHH-HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT
T ss_pred EECCCCCHHH-HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh
Confidence 7542110000 0112244444444577889999998764210 11111
Q ss_pred HHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCC
Q 013511 224 QMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPN 290 (441)
Q Consensus 224 ~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~ 290 (441)
++....||+||+||+++ +|+|| +++||+..++.+.+++++++. .+||+++|+ +..+.+.||+
T Consensus 148 ~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd-----~~~~~~~~d~ 222 (257)
T 1g6h_A 148 DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR-----LDIVLNYIDH 222 (257)
T ss_dssp TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC-----CSTTGGGCSE
T ss_pred CCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC-----HHHHHHhCCE
Confidence 11224599999999876 99999 999999999999999988743 399999999 7777778999
Q ss_pred eEEEEecCCCCeeeCCh
Q 013511 291 VDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 291 v~vl~l~~~g~vv~~~~ 307 (441)
+.++ ++|.++..++
T Consensus 223 v~~l---~~G~i~~~g~ 236 (257)
T 1g6h_A 223 LYVM---FNGQIIAEGR 236 (257)
T ss_dssp EEEE---ETTEEEEEEE
T ss_pred EEEE---ECCEEEEEeC
Confidence 9998 7888887654
No 19
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.92 E-value=4e-29 Score=240.02 Aligned_cols=199 Identities=12% Similarity=0.165 Sum_probs=147.5
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|
T Consensus 9 ~~~l~~~~l~~~~~~~--~vL~~--vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl------------~~p~~G~I~~~g 72 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQ--ALIND--VSLHIASGEMVAIIGPNGAGKSTLLRLLTGY------------LSPSHGECHLLG 72 (266)
T ss_dssp CCEEEEEEEEEEETTE--EEEEE--EEEEEETTCEEEEECCTTSCHHHHHHHHTSS------------SCCSSCEEEETT
T ss_pred cceEEEEeEEEEeCCe--eEEEe--eEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCCcEEEECC
Confidence 4678999999999875 46765 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------HHHHHH---------HHHHHHhccCcccee
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------LVKELA---------QMLERQFNGNAESRA 238 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------~~~~l~---------~~~~~~ls~g~~~r~ 238 (441)
...............++. ++...++..+|+.+|+.++.. .+.++. ++....||+||+||+
T Consensus 73 ~~~~~~~~~~~~~~i~~v--~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv 150 (266)
T 4g1u_C 73 QNLNSWQPKALARTRAVM--RQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRV 150 (266)
T ss_dssp EETTTSCHHHHHHHEEEE--CSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHH
T ss_pred EECCcCCHHHHhheEEEE--ecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH
Confidence 754221111111112333 333345667899999877531 122222 223356999999764
Q ss_pred ----------------eeEEEeC-CCCCCchhHHHHHHHHHHcCC--C-EEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 239 ----------------AGMVINT-MGWIEGVGYELLLHAIDTFKA--N-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 239 ----------------~~lIlDE-~~~lD~~~~~~l~~li~~~~~--~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
.++|+|| +++||+..+..+.+++++++. . +||+++|+ +..+.+.||++.++ +
T Consensus 151 ~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd-----l~~~~~~~d~v~vl---~ 222 (266)
T 4g1u_C 151 QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD-----LNLAALYADRIMLL---A 222 (266)
T ss_dssp HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC-----HHHHHHHCSEEEEE---E
T ss_pred HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC-----HHHHHHhCCEEEEE---E
Confidence 3489999 999999999999999998842 3 89999999 88887889999999 8
Q ss_pred CCCeeeCChHHHHHHHHHHHHHHh
Q 013511 299 SGGVVSRNSKVRQKARSYRIREYF 322 (441)
Q Consensus 299 ~g~vv~~~~~~~~~~r~~~~~~yf 322 (441)
+|+++..++... ......+.++|
T Consensus 223 ~G~i~~~g~~~~-~~~~~~l~~~~ 245 (266)
T 4g1u_C 223 QGKLVACGTPEE-VLNAETLTQWY 245 (266)
T ss_dssp TTEEEEEECHHH-HCCHHHHHHHC
T ss_pred CCEEEEEcCHHH-HhCcHHHHHHh
Confidence 999988765332 12334556665
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.92 E-value=9.8e-29 Score=233.25 Aligned_cols=186 Identities=18% Similarity=0.199 Sum_probs=138.1
Q ss_pred chhHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 99 MVSYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 99 ml~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
|++++|+++.|++.. ..++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~--isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl------------~~p~~G~I~~~g 66 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKN--VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL------------DKPTEGEVYIDN 66 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEE--EEEEECTTCEEEEECSTTSSHHHHHHHHTTS------------SCCSEEEEEETT
T ss_pred CEEEEEEEEEeCCCCcceeeEEe--eeEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCceEEEECC
Confidence 355677777776432 246765 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCC--CCCCCCcccceEEEecccCccCCHHHHHHH--------------HHHHH----------HHHHHHh
Q 013511 177 CIAATPIELPID--PVEGIPLEMPLVYFFGHATPSNNVELYKVL--------------VKELA----------QMLERQF 230 (441)
Q Consensus 177 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------------~~~l~----------~~~~~~l 230 (441)
............ .+..+.+.++...+++.+|+.+|+.+.... +.++. ++....|
T Consensus 67 ~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 146 (235)
T 3tif_A 67 IKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQL 146 (235)
T ss_dssp EECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGS
T ss_pred EEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhC
Confidence 754321111100 011233344444688889999999875321 11111 2234579
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
|+||+||+++ +|+|| +++||+..++.+.+++++++ ..+||++||+ +.. .+.||++.++
T Consensus 147 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd-----~~~-~~~~d~i~~l-- 218 (235)
T 3tif_A 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD-----INV-ARFGERIIYL-- 218 (235)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC-----HHH-HTTSSEEEEE--
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC-----HHH-HHhCCEEEEE--
Confidence 9999999876 99999 99999999999999999884 3499999999 764 4689999999
Q ss_pred cCCCCeeeCCh
Q 013511 297 QKSGGVVSRNS 307 (441)
Q Consensus 297 ~~~g~vv~~~~ 307 (441)
++|.++..++
T Consensus 219 -~~G~i~~~~~ 228 (235)
T 3tif_A 219 -KDGEVEREEK 228 (235)
T ss_dssp -ETTEEEEEEE
T ss_pred -ECCEEEEEcC
Confidence 8888876543
No 21
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.92 E-value=3.2e-27 Score=224.03 Aligned_cols=183 Identities=15% Similarity=0.209 Sum_probs=133.5
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. ..++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|..
T Consensus 1 ml~~~~l~~~y~~~-~~vl~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~ 65 (243)
T 1mv5_A 1 MLSARHVDFAYDDS-EQILRD--ISFEAQPNSIIAFAGPSGGGKSTIFSLLERF------------YQPTAGEITIDGQP 65 (243)
T ss_dssp CEEEEEEEECSSSS-SCSEEE--EEEEECTTEEEEEECCTTSSHHHHHHHHTTS------------SCCSBSCEEETTEE
T ss_pred CEEEEEEEEEeCCC-CceEEE--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCEE
Confidence 35567777778321 246765 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH------HHHHHHHHHH--------------------HHHhcc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK------VLVKELAQML--------------------ERQFNG 232 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~------~~~~~l~~~~--------------------~~~ls~ 232 (441)
......... +..+.+.++...+|. .|+.+|+.++. ..+.+..+.. ...||+
T Consensus 66 ~~~~~~~~~--~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSg 142 (243)
T 1mv5_A 66 IDNISLENW--RSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISG 142 (243)
T ss_dssp STTTSCSCC--TTTCCEECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCH
T ss_pred hhhCCHHHH--HhhEEEEcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCH
Confidence 422111122 223444444445566 49999987641 1122221111 136999
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
||+||+++ +|+|| +++||+..++.+.+++++++. .+||+++|+ +.... .||++.++ ++|
T Consensus 143 Gq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~-----~~~~~-~~d~v~~l---~~G 213 (243)
T 1mv5_A 143 GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHR-----LSTIV-DADKIYFI---EKG 213 (243)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCS-----HHHHH-HCSEEEEE---ETT
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCC-----hHHHH-hCCEEEEE---ECC
Confidence 99999875 99999 999999999999999988753 399999999 55443 48999988 788
Q ss_pred CeeeCChH
Q 013511 301 GVVSRNSK 308 (441)
Q Consensus 301 ~vv~~~~~ 308 (441)
.++..+..
T Consensus 214 ~i~~~g~~ 221 (243)
T 1mv5_A 214 QITGSGKH 221 (243)
T ss_dssp EECCCSCH
T ss_pred EEEEeCCH
Confidence 88876653
No 22
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.92 E-value=5.3e-28 Score=236.14 Aligned_cols=197 Identities=20% Similarity=0.306 Sum_probs=144.6
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.+++.|+++.|++.+ .++++ +||++++|++++|+||||||||||+|+|+|+ ++|.+|+|.++|..
T Consensus 53 ~i~~~~vs~~y~~~~-~vL~~--isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl------------~~p~~G~I~i~G~~ 117 (306)
T 3nh6_A 53 RIEFENVHFSYADGR-ETLQD--VSFTVMPGQTLALVGPSGAGKSTILRLLFRF------------YDISSGCIRIDGQD 117 (306)
T ss_dssp CEEEEEEEEESSTTC-EEEEE--EEEEECTTCEEEEESSSCHHHHHHHHHHTTS------------SCCSEEEEEETTEE
T ss_pred eEEEEEEEEEcCCCC-ceeee--eeEEEcCCCEEEEECCCCchHHHHHHHHHcC------------CCCCCcEEEECCEE
Confidence 577889999996432 47766 9999999999999999999999999999999 99999999999976
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHHH---------HHHHHH-----------HHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVKE---------LAQMLE-----------RQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~~---------l~~~~~-----------~~ls~g 233 (441)
+.......++. .+.+.++...+|. .|+++|+.++.. .+.+ +...++ ..||+|
T Consensus 118 i~~~~~~~~r~--~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGG 194 (306)
T 3nh6_A 118 ISQVTQASLRS--HIGVVPQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194 (306)
T ss_dssp TTSBCHHHHHH--TEEEECSSCCCCS-EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHH
T ss_pred cccCCHHHHhc--ceEEEecCCccCc-ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHH
Confidence 53322111222 2344444445664 599999987531 1111 111111 258999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+||+++ ||+|| |++||+.....+.+.|+++..+ ++|+++|+ +..+.. ||++.++ ++|.
T Consensus 195 qrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~-----l~~~~~-aD~i~vl---~~G~ 265 (306)
T 3nh6_A 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHR-----LSTVVN-ADQILVI---KDGC 265 (306)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCS-----HHHHHT-CSEEEEE---ETTE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcC-----hHHHHc-CCEEEEE---ECCE
Confidence 9999876 99999 9999999999999999887544 99999999 777654 9999999 8999
Q ss_pred eeeCChHHHHHHHHHHHHHHh
Q 013511 302 VVSRNSKVRQKARSYRIREYF 322 (441)
Q Consensus 302 vv~~~~~~~~~~r~~~~~~yf 322 (441)
+++.++......+...+.++|
T Consensus 266 iv~~G~~~el~~~~~~y~~l~ 286 (306)
T 3nh6_A 266 IVERGRHEALLSRGGVYADMW 286 (306)
T ss_dssp EEEEECHHHHHHHTSHHHHHH
T ss_pred EEEECCHHHHHhcChHHHHHH
Confidence 998876443222333344443
No 23
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.91 E-value=7.9e-27 Score=220.69 Aligned_cols=178 Identities=17% Similarity=0.256 Sum_probs=136.2
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++ .+++ +||++.+ ++++|+||||||||||+|+|+|+ +.|++|+|.++|..
T Consensus 1 ml~~~~l~~~y~~----~l~~--isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~ 61 (240)
T 2onk_A 1 MFLKVRAEKRLGN----FRLN--VDFEMGR-DYCVLLGPTGAGKSVFLELIAGI------------VKPDRGEVRLNGAD 61 (240)
T ss_dssp CCEEEEEEEEETT----EEEE--EEEEECS-SEEEEECCTTSSHHHHHHHHHTS------------SCCSEEEEEETTEE
T ss_pred CEEEEEEEEEeCC----EEee--eEEEECC-EEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEE
Confidence 3566777777754 2554 9999999 99999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------HHHHHH---------HHHHHHhccCccceeee
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------LVKELA---------QMLERQFNGNAESRAAG 240 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------~~~~l~---------~~~~~~ls~g~~~r~~~ 240 (441)
.... ... +..+.+.++...+++++|+.+|+.++.. .+.++. ++....||+||+||+++
T Consensus 62 ~~~~--~~~--~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l 137 (240)
T 2onk_A 62 ITPL--PPE--RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVAL 137 (240)
T ss_dssp CTTS--CTT--TSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHH
T ss_pred CCcC--chh--hCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHH
Confidence 4211 111 2234444444467888999999977421 111111 22234699999999876
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCC
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRN 306 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~ 306 (441)
+|+|| +++||+..++.+.++++++. ..+||+++|+ +..+.+.||++.++ ++|.++..+
T Consensus 138 Aral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd-----~~~~~~~~d~i~~l---~~G~i~~~g 209 (240)
T 2onk_A 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-----LIEAAMLADEVAVM---LNGRIVEKG 209 (240)
T ss_dssp HHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-----HHHHHHHCSEEEEE---ETTEEEEEE
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEEEEC
Confidence 99999 99999999999999998874 3488999999 77777789999988 888888765
Q ss_pred h
Q 013511 307 S 307 (441)
Q Consensus 307 ~ 307 (441)
+
T Consensus 210 ~ 210 (240)
T 2onk_A 210 K 210 (240)
T ss_dssp C
T ss_pred C
Confidence 4
No 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.91 E-value=6.9e-27 Score=225.11 Aligned_cols=184 Identities=15% Similarity=0.172 Sum_probs=137.4
Q ss_pred CchhHHHHHHHHhhh-hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 98 PMVSYVNVNAVLEGR-RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~-~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.|+++.|+++.|++. ...++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~--vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl------------~~p~~G~I~~~g 80 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQG--LTFTLYPGKVTALVGPNGSGKSTVAALLQNL------------YQPTGGKVLLDG 80 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEE--EEEEECTTCEEEEECSTTSSHHHHHHHHTTS------------SCCSEEEEEETT
T ss_pred ceEEEEEEEEEeCCCCCceeeEe--eEEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCCEEEECC
Confidence 478899999999751 1246765 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH------HHH---------HHHHH-----------HHHHHh
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK------VLV---------KELAQ-----------MLERQF 230 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~------~~~---------~~l~~-----------~~~~~l 230 (441)
..........+. ..+.+.++...+|+ .|+.+|+.++. ..+ .++.+ .....|
T Consensus 81 ~~i~~~~~~~~~--~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~L 157 (271)
T 2ixe_A 81 EPLVQYDHHYLH--TQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQL 157 (271)
T ss_dssp EEGGGBCHHHHH--HHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTS
T ss_pred EEcccCCHHHHh--ccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCC
Confidence 754221111111 12333333335565 59999987642 111 11111 123469
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
|+||+||+++ +|+|| +++||+..++.+.++|+++.. .+||+++|+ +.... .||++.++
T Consensus 158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd-----~~~~~-~~d~v~~l-- 229 (271)
T 2ixe_A 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ-----LSLAE-RAHHILFL-- 229 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC-----HHHHT-TCSEEEEE--
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC-----HHHHH-hCCEEEEE--
Confidence 9999999876 99999 999999999999999999853 399999999 76654 49999988
Q ss_pred cCCCCeeeCCh
Q 013511 297 QKSGGVVSRNS 307 (441)
Q Consensus 297 ~~~g~vv~~~~ 307 (441)
+.|.++..++
T Consensus 230 -~~G~i~~~g~ 239 (271)
T 2ixe_A 230 -KEGSVCEQGT 239 (271)
T ss_dssp -ETTEEEEEEC
T ss_pred -ECCEEEEECC
Confidence 7888887655
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.90 E-value=2.3e-27 Score=229.27 Aligned_cols=187 Identities=13% Similarity=0.182 Sum_probs=138.0
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 19 ~~~l~~~~l~~~y~~~--~vL~~--isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl------------~~p~~G~I~~~g 82 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGK--TILKK--ISWQIAKGDKWILYGLNGAGKTTLLNILNAY------------EPATSGTVNLFG 82 (279)
T ss_dssp CEEEEEEEEEEEETTE--EEEEE--EEEEEETTCEEEEECCTTSSHHHHHHHHTTS------------SCCSEEEEEETT
T ss_pred CceEEEEeEEEEECCE--EEEEe--eeEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCCeEEEECC
Confidence 3478899999999764 46765 9999999999999999999999999999999 999999999999
Q ss_pred eeee--eeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------------HHHHHH---------HHHHHHh
Q 013511 177 CIAA--TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------------LVKELA---------QMLERQF 230 (441)
Q Consensus 177 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------------~~~~l~---------~~~~~~l 230 (441)
.... ...........++.+|.+...+...+|+.||+.+... .+.++. ++....|
T Consensus 83 ~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 162 (279)
T 2ihy_A 83 KMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYL 162 (279)
T ss_dssp BCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred EEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhC
Confidence 7542 1100111122233333332123345699999876310 011111 1223469
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEE--EEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVV--LVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~V--ivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
|+||+||+++ +|+|| +++||+..++.+.++|++++. .+| |+++|+ +..+.+.||++.++
T Consensus 163 SgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd-----~~~~~~~~d~v~~l- 236 (279)
T 2ihy_A 163 STGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHF-----IEEITANFSKILLL- 236 (279)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESC-----GGGCCTTCCEEEEE-
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecC-----HHHHHHhCCEEEEE-
Confidence 9999999876 99999 999999999999999988743 377 889999 77777789999998
Q ss_pred ecCCCCeeeCCh
Q 013511 296 LQKSGGVVSRNS 307 (441)
Q Consensus 296 l~~~g~vv~~~~ 307 (441)
++|.++..+.
T Consensus 237 --~~G~i~~~g~ 246 (279)
T 2ihy_A 237 --KDGQSIQQGA 246 (279)
T ss_dssp --ETTEEEEEEE
T ss_pred --ECCEEEEECC
Confidence 8888887665
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.90 E-value=3.5e-26 Score=217.79 Aligned_cols=187 Identities=18% Similarity=0.197 Sum_probs=133.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+.. +.|++|+|.++|..
T Consensus 3 ~l~~~~l~~~y~~~--~vl~~--vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~----------~~p~~G~I~~~g~~ 68 (250)
T 2d2e_A 3 QLEIRDLWASIDGE--TILKG--VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE----------YTVERGEILLDGEN 68 (250)
T ss_dssp EEEEEEEEEEETTE--EEEEE--EEEEEETTCEEEEECSTTSSHHHHHHHHHTCTT----------CEEEEEEEEETTEE
T ss_pred eEEEEeEEEEECCE--EEEec--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC----------CCCCceEEEECCEE
Confidence 67788888888764 46765 999999999999999999999999999999500 36889999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------------HHHHHHH----------HHHH-hccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------------VKELAQM----------LERQ-FNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------------~~~l~~~----------~~~~-ls~g 233 (441)
......... .+.++.+.++...+|+.+|+.+|+.+.... +.++.+. .... ||+|
T Consensus 69 ~~~~~~~~~-~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgG 147 (250)
T 2d2e_A 69 ILELSPDER-ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGG 147 (250)
T ss_dssp CTTSCHHHH-HHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----
T ss_pred CCCCCHHHH-HhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHH
Confidence 422111011 112233333444578889999998764321 1111111 1134 9999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcC-CCCeEEEEecCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKN-RPNVDVVKLQKS 299 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~-~~~v~vl~l~~~ 299 (441)
|+||+++ +|+|| +++||+..++.+.++|++++. .+||++||+ +...... ||++.++ +.
T Consensus 148 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd-----~~~~~~~~~d~v~~l---~~ 219 (250)
T 2d2e_A 148 EKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY-----QRILNYIQPDKVHVM---MD 219 (250)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS-----SGGGGTSCCSEEEEE---ET
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHHHHhcCCEEEEE---EC
Confidence 9999876 99999 999999999999999999853 389999999 6666666 5999988 88
Q ss_pred CCeeeCChH
Q 013511 300 GGVVSRNSK 308 (441)
Q Consensus 300 g~vv~~~~~ 308 (441)
|.++..++.
T Consensus 220 G~i~~~g~~ 228 (250)
T 2d2e_A 220 GRVVATGGP 228 (250)
T ss_dssp TEEEEEESH
T ss_pred CEEEEEeCH
Confidence 888876653
No 27
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.90 E-value=2.5e-26 Score=215.91 Aligned_cols=170 Identities=15% Similarity=0.250 Sum_probs=126.5
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
++++.|+++.|+.....++++ +||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKD--INFKIERGQLLAVAGSTGAGKTSLLMMIMGE------------LEPSEGKIKHSGRI 71 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEE--EEEEEETTCEEEEECCTTSSHHHHHHHHTTS------------SCCSEEEEEECSCE
T ss_pred eEEEEEEEEEeCCCCceeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CcCCccEEEECCEE
Confidence 677788888885322246765 9999999999999999999999999999999 99999999999842
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH----HHHHHH------HHHH--------------HHHhccCc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK----VLVKEL------AQML--------------ERQFNGNA 234 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~----~~~~~l------~~~~--------------~~~ls~g~ 234 (441)
. +.+|.+ .+|+. |+.+|+.++. ....+. .+.. ...||+||
T Consensus 72 ~-------------~v~q~~--~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGq 135 (229)
T 2pze_A 72 S-------------FCSQFS--WIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQ 135 (229)
T ss_dssp E-------------EECSSC--CCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHH
T ss_pred E-------------EEecCC--cccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHH
Confidence 2 222222 34554 8888887641 011111 1111 14799999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHH-HHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHA-IDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~l-i~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
+||+++ +|+|| +++||+..++.+.+. ++++.. .+||+++|+ +.... .||++.++ ++|.
T Consensus 136 kqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~-----~~~~~-~~d~v~~l---~~G~ 206 (229)
T 2pze_A 136 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK-----MEHLK-KADKILIL---HEGS 206 (229)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCC-----HHHHH-HCSEEEEE---ETTE
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCC-----hHHHH-hCCEEEEE---ECCE
Confidence 998875 99999 999999999999886 455543 399999999 55543 48999888 7888
Q ss_pred eeeCCh
Q 013511 302 VVSRNS 307 (441)
Q Consensus 302 vv~~~~ 307 (441)
++..+.
T Consensus 207 i~~~g~ 212 (229)
T 2pze_A 207 SYFYGT 212 (229)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 887654
No 28
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.90 E-value=2.1e-26 Score=220.43 Aligned_cols=183 Identities=19% Similarity=0.279 Sum_probs=135.1
Q ss_pred CchhHHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 98 PMVSYVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
+++++.|+++.|++.. ..++++ +||++.+|++++|+||||||||||+|+|+|+ ++| +|+|.++|
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~-~G~I~i~g 80 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKS--INFFIPSGTTCALVGHTGSGKSTIAKLLYRF------------YDA-EGDIKIGG 80 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEE--EEEEECTTCEEEEECSTTSSHHHHHHHHTTS------------SCC-EEEEEETT
T ss_pred CeEEEEEEEEEeCCCCcCceeEe--eEEEECCCCEEEEECCCCCCHHHHHHHHhcc------------CCC-CeEEEECC
Confidence 4688889999997531 246765 9999999999999999999999999999999 877 89999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH-----HHHHHHH------HHH--------------HHHhc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK-----VLVKELA------QML--------------ERQFN 231 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~-----~~~~~l~------~~~--------------~~~ls 231 (441)
..........+. ..+.+.++...+|. .|+.+|+.++. ..+.+.. +.. ...||
T Consensus 81 ~~i~~~~~~~~~--~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LS 157 (260)
T 2ghi_A 81 KNVNKYNRNSIR--SIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLS 157 (260)
T ss_dssp EEGGGBCHHHHH--TTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCC
T ss_pred EEhhhcCHHHHh--ccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCC
Confidence 754221111111 23444444445565 59999987642 1111111 111 13699
Q ss_pred cCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 232 GNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 232 ~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
+||+||+++ +|+|| +++||+..++.+.+++++++.. +||+++|+ +... ..||++.++ +.
T Consensus 158 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~-----~~~~-~~~d~i~~l---~~ 228 (260)
T 2ghi_A 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHR-----LSTI-SSAESIILL---NK 228 (260)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSS-----GGGS-TTCSEEEEE---ET
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCC-----HHHH-HhCCEEEEE---EC
Confidence 999999876 99999 9999999999999999988644 99999999 5544 358999888 78
Q ss_pred CCeeeCCh
Q 013511 300 GGVVSRNS 307 (441)
Q Consensus 300 g~vv~~~~ 307 (441)
|.++..++
T Consensus 229 G~i~~~g~ 236 (260)
T 2ghi_A 229 GKIVEKGT 236 (260)
T ss_dssp TEEEEEEC
T ss_pred CEEEEECC
Confidence 88887655
No 29
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.90 E-value=3e-26 Score=219.48 Aligned_cols=177 Identities=18% Similarity=0.188 Sum_probs=134.1
Q ss_pred chhHHHHHHHHhhh--hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 99 MVSYVNVNAVLEGR--RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 99 ml~~~nl~~~~~~~--~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
|+++.|+++.|++. ...++++ +||++. |++++|+||||||||||+|+|+|+ + |++|+|.++|
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~--vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl------------~-p~~G~I~~~g 64 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLEN--INLEVN-GEKVIILGPNGSGKTTLLRAISGL------------L-PYSGNIFING 64 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEE--EEEEEC-SSEEEEECCTTSSHHHHHHHHTTS------------S-CCEEEEEETT
T ss_pred CEEEEEEEEEeCCCCccceeEEe--eeEEEC-CEEEEEECCCCCCHHHHHHHHhCC------------C-CCCcEEEECC
Confidence 34566777777541 0146765 999999 999999999999999999999999 9 9999999999
Q ss_pred eeeeeeccCcCCCCCCCC-cccceEEEecccCccCCHHHHHH-------HHHHHHH----------HHHHHhccCcccee
Q 013511 177 CIAATPIELPIDPVEGIP-LEMPLVYFFGHATPSNNVELYKV-------LVKELAQ----------MLERQFNGNAESRA 238 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~tv~en~~~~~~-------~~~~l~~----------~~~~~ls~g~~~r~ 238 (441)
...... . . +..+. +.++...+ .+|+.+|+.++.. .+.++.+ +....||+||+||+
T Consensus 65 ~~~~~~--~-~--~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv 137 (263)
T 2pjz_A 65 MEVRKI--R-N--YIRYSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLV 137 (263)
T ss_dssp EEGGGC--S-C--CTTEEECCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHH
T ss_pred EECcch--H-H--hhheEEEeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence 754221 1 1 22333 33333333 7899999988643 1222221 22346999999988
Q ss_pred ee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCC-CeEEEEecCCCCeeeCC
Q 013511 239 AG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRP-NVDVVKLQKSGGVVSRN 306 (441)
Q Consensus 239 ~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~-~v~vl~l~~~g~vv~~~ 306 (441)
++ +|+|| +++||+..++.+.+++++++. +||++||+ +....+.|| ++.++ ++|.++..+
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivtHd-----~~~~~~~~d~~i~~l---~~G~i~~~g 208 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVTHE-----LDMLNLYKEYKAYFL---VGNRLQGPI 208 (263)
T ss_dssp HHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEESC-----GGGGGGCTTSEEEEE---ETTEEEEEE
T ss_pred HHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEEcC-----HHHHHHhcCceEEEE---ECCEEEEec
Confidence 76 99999 999999999999999999976 99999999 766667899 99888 788888766
Q ss_pred h
Q 013511 307 S 307 (441)
Q Consensus 307 ~ 307 (441)
+
T Consensus 209 ~ 209 (263)
T 2pjz_A 209 S 209 (263)
T ss_dssp E
T ss_pred C
Confidence 5
No 30
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.90 E-value=1.9e-26 Score=221.56 Aligned_cols=183 Identities=21% Similarity=0.302 Sum_probs=135.8
Q ss_pred chhHHHHHHHHh-hhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 99 MVSYVNVNAVLE-GRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 99 ml~~~nl~~~~~-~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
|+++.|+++.|+ +.. ..++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~--vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl------------~~p~~G~I~~~ 67 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALEN--VSLVINEGECLLVAGNTGSGKSTLLQIVAGL------------IEPTSGDVLYD 67 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEE--EEEEECTTCEEEEECSTTSSHHHHHHHHTTS------------SCCSEEEEEET
T ss_pred EEEEEEEEEEecCCCccccceeee--eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCCcEEEEC
Confidence 466777888886 211 246765 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----------HHHHHH-----------HHHHHHhccCc
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----------LVKELA-----------QMLERQFNGNA 234 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----------~~~~l~-----------~~~~~~ls~g~ 234 (441)
|...... ......++.++.+. .++...|+.+|+.++.. .+.++. ++....||+||
T Consensus 68 g~~~~~~---~~~~~i~~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq 143 (266)
T 2yz2_A 68 GERKKGY---EIRRNIGIAFQYPE-DQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGE 143 (266)
T ss_dssp TEECCHH---HHGGGEEEECSSGG-GGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHH
T ss_pred CEECchH---HhhhhEEEEeccch-hhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHH
Confidence 9754221 11112334444331 23446799999877421 112222 22234699999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
+||+++ +|+|| +++||+..++.+.+++++++ ..+||+++|+ +..+...||++.++ +.|.
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd-----~~~~~~~~d~v~~l---~~G~ 215 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD-----IETVINHVDRVVVL---EKGK 215 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC-----CTTTGGGCSEEEEE---ETTE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCE
Confidence 999876 99999 99999999999999999874 2499999999 66666679999888 7888
Q ss_pred eeeCCh
Q 013511 302 VVSRNS 307 (441)
Q Consensus 302 vv~~~~ 307 (441)
++..+.
T Consensus 216 i~~~g~ 221 (266)
T 2yz2_A 216 KVFDGT 221 (266)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 887654
No 31
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.89 E-value=1.3e-26 Score=220.36 Aligned_cols=181 Identities=16% Similarity=0.219 Sum_probs=129.9
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
++.|+++.|.+....++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|....
T Consensus 9 ~~~~l~~~y~~~~~~vl~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~I~i~g~~~~ 74 (247)
T 2ff7_A 9 TFRNIRFRYKPDSPVILDN--INLSIKQGEVIGIVGRSGSGKSTLTKLIQRF------------YIPENGQVLIDGHDLA 74 (247)
T ss_dssp EEEEEEEESSTTSCEEEEE--EEEEEETTCEEEEECSTTSSHHHHHHHHTTS------------SCCSEEEEEETTEETT
T ss_pred eEEEEEEEeCCCCcceeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCEEhh
Confidence 3456677772111246765 9999999999999999999999999999999 9999999999997542
Q ss_pred eeccCcCCCCCCCCcccceEEEecccCccCCHHHHH-----HHHHH---------HHHHH-----------HHHhccCcc
Q 013511 181 TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK-----VLVKE---------LAQML-----------ERQFNGNAE 235 (441)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~-----~~~~~---------l~~~~-----------~~~ls~g~~ 235 (441)
......+. ..+.+.++...+|. .|+.+|+.++. ..+.+ +.+.. ...||+||+
T Consensus 75 ~~~~~~~~--~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 151 (247)
T 2ff7_A 75 LADPNWLR--RQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR 151 (247)
T ss_dssp TSCHHHHH--HHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHH
T ss_pred hCCHHHHH--hcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHH
Confidence 11100111 12333333334555 59999987642 11111 11111 146999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
||+++ +|+|| +++||+..++.+.+++++++. .+||+++|+ +.... .||++.++ +.|.++
T Consensus 152 qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~-----~~~~~-~~d~v~~l---~~G~i~ 222 (247)
T 2ff7_A 152 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHR-----LSTVK-NADRIIVM---EKGKIV 222 (247)
T ss_dssp HHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSS-----GGGGT-TSSEEEEE---ETTEEE
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCC-----HHHHH-hCCEEEEE---ECCEEE
Confidence 99875 99999 999999999999999988743 399999999 55443 58999888 788888
Q ss_pred eCCh
Q 013511 304 SRNS 307 (441)
Q Consensus 304 ~~~~ 307 (441)
..++
T Consensus 223 ~~g~ 226 (247)
T 2ff7_A 223 EQGK 226 (247)
T ss_dssp EEEC
T ss_pred EECC
Confidence 7654
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.89 E-value=7.4e-26 Score=217.48 Aligned_cols=190 Identities=16% Similarity=0.171 Sum_probs=137.2
Q ss_pred eeCCCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec--cCCCC
Q 013511 93 TADETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL--DIGQG 170 (441)
Q Consensus 93 ~~~~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl--dp~~G 170 (441)
+...++|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ + .|++|
T Consensus 14 ~~~~~~~l~~~~l~~~y~~~--~vl~~--vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl------------~~~~p~~G 77 (267)
T 2zu0_C 14 VPRGSHMLSIKDLHVSVEDK--AILRG--LSLDVHPGEVHAIMGPNGSGKSTLSATLAGR------------EDYEVTGG 77 (267)
T ss_dssp ------CEEEEEEEEEETTE--EEEEE--EEEEECTTCEEEEECCTTSSHHHHHHHHHTC------------TTCEEEEE
T ss_pred cCCCCceEEEEeEEEEECCE--EEEEe--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCCe
Confidence 34456689999999999764 46765 9999999999999999999999999999997 4 58899
Q ss_pred cccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH------------------HHHHHHH--------
Q 013511 171 AITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV------------------LVKELAQ-------- 224 (441)
Q Consensus 171 ~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------------------~~~~l~~-------- 224 (441)
+|.++|........... .+.++.+.++...+++.+|+.+|+.+... .+.++.+
T Consensus 78 ~I~~~g~~i~~~~~~~~-~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 156 (267)
T 2zu0_C 78 TVEFKGKDLLALSPEDR-AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDL 156 (267)
T ss_dssp EEEETTEEGGGSCHHHH-HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTT
T ss_pred EEEECCEECCcCCHHHH-hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhH
Confidence 99999975422111000 11233344444467788899888865321 0111111
Q ss_pred --HHHH-HhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcC-
Q 013511 225 --MLER-QFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKN- 287 (441)
Q Consensus 225 --~~~~-~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~- 287 (441)
+... .||+||+||+++ +|+|| +++||+..++.+.++|++++. .+||+++|+ +......
T Consensus 157 ~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd-----~~~~~~~~ 231 (267)
T 2zu0_C 157 LTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY-----QRILDYIK 231 (267)
T ss_dssp TTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSS-----GGGGGTSC
T ss_pred hcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeC-----HHHHHhhc
Confidence 1112 399999998876 99999 999999999999999999854 399999999 6666555
Q ss_pred CCCeEEEEecCCCCeeeCCh
Q 013511 288 RPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 288 ~~~v~vl~l~~~g~vv~~~~ 307 (441)
||++.++ +.|.++..++
T Consensus 232 ~d~v~~l---~~G~i~~~g~ 248 (267)
T 2zu0_C 232 PDYVHVL---YQGRIVKSGD 248 (267)
T ss_dssp CSEEEEE---ETTEEEEEEC
T ss_pred CCEEEEE---ECCEEEEEcC
Confidence 8999988 7888887654
No 33
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.89 E-value=3.6e-25 Score=235.21 Aligned_cols=186 Identities=20% Similarity=0.328 Sum_probs=140.9
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.+++++|+++.|++....++++ +|+++++|++++|+||||||||||+|+|+|+ ++|++|+|.++|.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~--i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~------------~~p~~G~i~~~g~ 405 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSH--VSFSIPQGKTVALVGRSGSGKSTIANLFTRF------------YDVDSGSICLDGH 405 (582)
T ss_pred CeEEEEEEEEEcCCCCcccccc--ceEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCCEEEECCE
Confidence 3578889999997532246765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH--H----HHHH---------HHHHHH-----------HHhc
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK--V----LVKE---------LAQMLE-----------RQFN 231 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~--~----~~~~---------l~~~~~-----------~~ls 231 (441)
+........++. .+.+.+|...+|. .|++||+.++. . .+.+ +.+..+ ..||
T Consensus 406 ~~~~~~~~~~~~--~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LS 482 (582)
T 3b5x_A 406 DVRDYKLTNLRR--HFALVSQNVHLFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482 (582)
T ss_pred EhhhCCHHHHhc--CeEEEcCCCcccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCC
Confidence 653321112222 3444444445665 49999998753 1 1111 111111 3699
Q ss_pred cCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 232 GNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 232 ~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
+||+||+++ +|+|| +++||+...+.+.+.++++..+ ++|+++|+ +... +.||++.++ ++
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~-----~~~~-~~~d~i~~l---~~ 553 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHR-----LSTI-EQADEILVV---DE 553 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecC-----HHHH-HhCCEEEEE---EC
Confidence 999999876 99999 9999999999999999987644 89999999 6555 369999999 89
Q ss_pred CCeeeCChHH
Q 013511 300 GGVVSRNSKV 309 (441)
Q Consensus 300 g~vv~~~~~~ 309 (441)
|++++.++..
T Consensus 554 G~i~~~g~~~ 563 (582)
T 3b5x_A 554 GEIIERGRHA 563 (582)
T ss_pred CEEEEECCHH
Confidence 9999887643
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.89 E-value=4.2e-26 Score=215.44 Aligned_cols=170 Identities=14% Similarity=0.176 Sum_probs=125.8
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++....++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|.+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~I~~~g~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNG--ITFSIPEGALVAVVGQVGCGKSSLLSALLAE------------MDKVEGHVAIKGSV 68 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEE--EEEEECTTCEEEEECSTTSSHHHHHHHHTTC------------SEEEEEEEEECSCE
T ss_pred eEEEEEEEEEeCCCCCceeee--eEEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCEE
Confidence 567788888886322246765 9999999999999999999999999999999 99999999999842
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----HHHHH------HH--------------HHHHHhccCc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----LVKEL------AQ--------------MLERQFNGNA 234 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----~~~~l------~~--------------~~~~~ls~g~ 234 (441)
. +.+|.+ . +...|+.+|+.++.. ...+. .+ .....||+||
T Consensus 69 ~-------------~v~Q~~--~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGq 132 (237)
T 2cbz_A 69 A-------------YVPQQA--W-IQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQ 132 (237)
T ss_dssp E-------------EECSSC--C-CCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHH
T ss_pred E-------------EEcCCC--c-CCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHH
Confidence 2 222332 2 235678888765321 11111 11 1124699999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHH---HcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAID---TFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~---~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
+||+++ +|+|| +++||+..++.+.+.+. +++. .+||+++|+ +... ..||++.++ +.
T Consensus 133 kqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~-----~~~~-~~~d~v~~l---~~ 203 (237)
T 2cbz_A 133 KQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHS-----MSYL-PQVDVIIVM---SG 203 (237)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSC-----STTG-GGSSEEEEE---ET
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecC-----hHHH-HhCCEEEEE---eC
Confidence 999876 99999 99999999999998884 3332 499999999 5444 358999888 78
Q ss_pred CCeeeCCh
Q 013511 300 GGVVSRNS 307 (441)
Q Consensus 300 g~vv~~~~ 307 (441)
|.++..++
T Consensus 204 G~i~~~g~ 211 (237)
T 2cbz_A 204 GKISEMGS 211 (237)
T ss_dssp TEEEEEEC
T ss_pred CEEEEeCC
Confidence 88887655
No 35
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.89 E-value=2.7e-25 Score=211.88 Aligned_cols=169 Identities=13% Similarity=0.092 Sum_probs=129.5
Q ss_pred chhHHHHHHHHh-hhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVLE-GRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~~-~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
|+++.|+++.|+ +. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.+.
T Consensus 4 ~l~i~~l~~~y~~~~--~vl~~--isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~I~~~-- 65 (253)
T 2nq2_C 4 ALSVENLGFYYQAEN--FLFQQ--LNFDLNKGDILAVLGQNGCGKSTLLDLLLGI------------HRPIQGKIEVY-- 65 (253)
T ss_dssp EEEEEEEEEEETTTT--EEEEE--EEEEEETTCEEEEECCSSSSHHHHHHHHTTS------------SCCSEEEEEEC--
T ss_pred eEEEeeEEEEeCCCC--eEEEE--EEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEEe--
Confidence 677888888887 43 46765 9999999999999999999999999999999 99999998711
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------------HHHHHH---------HHHHHHhccC
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------------LVKELA---------QMLERQFNGN 233 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------------~~~~l~---------~~~~~~ls~g 233 (441)
..+.+.++...+++.+|+.+|+.++.. .+.++. ++....||+|
T Consensus 66 -------------~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 132 (253)
T 2nq2_C 66 -------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGG 132 (253)
T ss_dssp -------------SCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHH
T ss_pred -------------ccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHH
Confidence 123333333355667788888876421 111111 1223469999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
|+||+++ +|+|| +++||+..++.+.+++++++ ..+||+++|+ +..+.+.||++.++ ++
T Consensus 133 q~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd-----~~~~~~~~d~v~~l---~~ 204 (253)
T 2nq2_C 133 QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ-----PNQVVAIANKTLLL---NK 204 (253)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC-----HHHHHHHCSEEEEE---ET
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHHHHhCCEEEEE---eC
Confidence 9999876 99999 99999999999999998874 2489999999 77777789999888 77
Q ss_pred CCeeeCCh
Q 013511 300 GGVVSRNS 307 (441)
Q Consensus 300 g~vv~~~~ 307 (441)
|. +..+.
T Consensus 205 G~-~~~g~ 211 (253)
T 2nq2_C 205 QN-FKFGE 211 (253)
T ss_dssp TE-EEEEE
T ss_pred Ce-EecCC
Confidence 77 66554
No 36
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.89 E-value=1.2e-25 Score=213.69 Aligned_cols=178 Identities=14% Similarity=0.149 Sum_probs=132.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|+ |+|.++|..
T Consensus 4 ~l~~~~l~~~------~vl~~--vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl------------~~p~-G~i~~~g~~ 62 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGP--LSGEVRAGEILHLVGPNGAGKSTLLARMAGM------------TSGK-GSIQFAGQP 62 (249)
T ss_dssp EEEEEEEEET------TTEEE--EEEEEETTCEEEEECCTTSSHHHHHHHHTTS------------SCCE-EEEEETTEE
T ss_pred EEEEEceEEE------EEEee--eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCC-eEEEECCEE
Confidence 4556666554 35655 9999999999999999999999999999999 9999 999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH------HHHHHHHH---------HHHHHhccCcccee-----
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK------VLVKELAQ---------MLERQFNGNAESRA----- 238 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~------~~~~~l~~---------~~~~~ls~g~~~r~----- 238 (441)
.......... ..+.+.++...+|..+|+.+|+.++. ..+.++.+ +....||+||+||+
T Consensus 63 ~~~~~~~~~~--~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAra 140 (249)
T 2qi9_C 63 LEAWSATKLA--LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAV 140 (249)
T ss_dssp GGGSCHHHHH--HHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHH
T ss_pred CCcCCHHHHh--ceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 4211111111 12334444445677889999987642 11222222 22346999999874
Q ss_pred -----e-------eEEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 239 -----A-------GMVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 239 -----~-------~lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
. ++|+|| +++||+..++.+.++++++. ..+||+++|+ +....+.||++.++ +.|.++
T Consensus 141 L~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd-----~~~~~~~~d~v~~l---~~G~i~ 212 (249)
T 2qi9_C 141 VLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD-----LNHTLRHAHRAWLL---KGGKML 212 (249)
T ss_dssp HHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHCSEEEEE---ETTEEE
T ss_pred HHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEE
Confidence 5 799999 99999999999999999884 3499999999 77776789999888 788888
Q ss_pred eCCh
Q 013511 304 SRNS 307 (441)
Q Consensus 304 ~~~~ 307 (441)
..+.
T Consensus 213 ~~g~ 216 (249)
T 2qi9_C 213 ASGR 216 (249)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 7655
No 37
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.88 E-value=6.4e-26 Score=210.65 Aligned_cols=166 Identities=13% Similarity=0.119 Sum_probs=124.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
+++++|+++.|++ .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|..
T Consensus 10 ~l~~~~ls~~y~~---~il~~--vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl------------~~p~~G~I~~~g~~ 72 (214)
T 1sgw_A 10 KLEIRDLSVGYDK---PVLER--ITMTIEKGNVVNFHGPNGIGKTTLLKTISTY------------LKPLKGEIIYNGVP 72 (214)
T ss_dssp EEEEEEEEEESSS---EEEEE--EEEEEETTCCEEEECCTTSSHHHHHHHHTTS------------SCCSEEEEEETTEE
T ss_pred eEEEEEEEEEeCC---eEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCeEEEECCEE
Confidence 3444555666654 36665 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH---------HHHHHH--------HHHHHhccCccceeee-
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL---------VKELAQ--------MLERQFNGNAESRAAG- 240 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~---------~~~l~~--------~~~~~ls~g~~~r~~~- 240 (441)
.. .. ...+.+.++...+|+.+|+.+|+.++... +.++.+ .....||+||+||+++
T Consensus 73 ~~-----~~--~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la 145 (214)
T 1sgw_A 73 IT-----KV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLA 145 (214)
T ss_dssp GG-----GG--GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHH
T ss_pred hh-----hh--cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHH
Confidence 42 11 22344444444578889999999876421 122222 2234689999998775
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
+|+|| +++||+..++.+.+++++++. .+||+++|+ +......++++.+
T Consensus 146 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd-----~~~~~~~~d~v~~ 205 (214)
T 1sgw_A 146 STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-----ELSYCDVNENLHK 205 (214)
T ss_dssp HHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-----CCTTSSEEEEGGG
T ss_pred HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEE
Confidence 99999 999999999999999988752 489999999 5555555666543
No 38
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.7e-26 Score=232.42 Aligned_cols=185 Identities=17% Similarity=0.216 Sum_probs=137.4
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
..++++|+++.|+.....++++ +||++.+|++++|+||||||||||+|+|+|+ ++ .+|+|.++|.
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~--vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl------------~~-~~G~I~i~G~ 82 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILEN--ISFSISPGQRVGLLGRTGSGKSTLLSAFLRL------------LN-TEGEIQIDGV 82 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEE--EEEEECTTCEEEEEESTTSSHHHHHHHHHTC------------SE-EEEEEEESSC
T ss_pred CeEEEEEEEEEecCCCeEEeec--eeEEEcCCCEEEEECCCCChHHHHHHHHhCC------------CC-CCeEEEECCE
Confidence 4678889999994322357766 9999999999999999999999999999998 77 8899999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH----HHH---------HHHHHHHHHH-----------hccC
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK----VLV---------KELAQMLERQ-----------FNGN 233 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~----~~~---------~~l~~~~~~~-----------ls~g 233 (441)
........... ..+.+.+|...+|+ .|+.+|+.++. ..+ ..+.+++... ||+|
T Consensus 83 ~i~~~~~~~~r--r~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG 159 (390)
T 3gd7_A 83 SWDSITLEQWR--KAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159 (390)
T ss_dssp BTTSSCHHHHH--HTEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred ECCcCChHHHh--CCEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence 54321111111 23344444445665 59999986431 111 1223344444 9999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+||+++ +|+|| +++||+..+..+.+.|+++... ++|+++|+ ++ ....||++.+| +.|.
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd-----~e-~~~~aDri~vl---~~G~ 230 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR-----IE-AMLECDQFLVI---EENK 230 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSS-----SG-GGTTCSEEEEE---ETTE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcC-----HH-HHHhCCEEEEE---ECCE
Confidence 9999876 99999 9999999999999999887644 89999999 43 33569999999 8999
Q ss_pred eeeCChHH
Q 013511 302 VVSRNSKV 309 (441)
Q Consensus 302 vv~~~~~~ 309 (441)
++..++..
T Consensus 231 i~~~g~~~ 238 (390)
T 3gd7_A 231 VRQYDSIL 238 (390)
T ss_dssp EEEESSHH
T ss_pred EEEECCHH
Confidence 99887643
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.88 E-value=9.4e-26 Score=239.48 Aligned_cols=199 Identities=17% Similarity=0.248 Sum_probs=146.4
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|+++.|++....++++ +||++++|++++|+||||||||||+|+|+|+ ++|++|+|.++|.+
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~--isl~i~~G~~~~ivG~sGsGKSTll~~l~g~------------~~p~~G~i~~~g~~ 404 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKD--INLSIEKGETVAFVGMSGGGKSTLINLIPRF------------YDVTSGQILIDGHN 404 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEE--EEEEECTTCEEEEECSTTSSHHHHHTTTTTS------------SCCSEEEEEETTEE
T ss_pred eEEEEEEEEEcCCCCCcceee--eEEEECCCCEEEEECCCCChHHHHHHHHhcC------------CCCCCcEEEECCEE
Confidence 467788888887543457766 9999999999999999999999999999999 99999999999976
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHHH---------HHHHHH-----------HHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVKE---------LAQMLE-----------RQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~~---------l~~~~~-----------~~ls~g 233 (441)
........++ ..+.+.+|...+|.. |++||+.++.. .+.+ +.+..+ ..||+|
T Consensus 405 ~~~~~~~~~r--~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgG 481 (578)
T 4a82_A 405 IKDFLTGSLR--NQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGG 481 (578)
T ss_dssp GGGSCHHHHH--HTEEEECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHH
T ss_pred hhhCCHHHHh--hheEEEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHH
Confidence 5332211122 234444444456654 99999976421 1111 111111 369999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+||+++ +|+|| +++||+...+.+.+.++++..+ ++|+++|+ +... +.||++.++ ++|+
T Consensus 482 q~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~-----l~~~-~~~d~i~~l---~~G~ 552 (578)
T 4a82_A 482 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHR-----LSTI-THADKIVVI---ENGH 552 (578)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSS-----GGGT-TTCSEEEEE---ETTE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecC-----HHHH-HcCCEEEEE---ECCE
Confidence 9999876 99999 9999999999999999888655 99999999 6554 469999999 8999
Q ss_pred eeeCChHHHHHHHHHHHHHHhc
Q 013511 302 VVSRNSKVRQKARSYRIREYFY 323 (441)
Q Consensus 302 vv~~~~~~~~~~r~~~~~~yf~ 323 (441)
+++.++...-..+...++++|.
T Consensus 553 i~~~g~~~el~~~~~~~~~~~~ 574 (578)
T 4a82_A 553 IVETGTHRELIAKQGAYEHLYS 574 (578)
T ss_dssp EEEEECHHHHHHTTSHHHHHHT
T ss_pred EEEECCHHHHHhCCcHHHHHHH
Confidence 9988875433223344555553
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=3.7e-25 Score=235.75 Aligned_cols=185 Identities=16% Similarity=0.256 Sum_probs=138.9
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|+++.|++.+ .++++ +||++++|++++|+||||||||||+|+|+|+ ++|++|+|.++|.+
T Consensus 354 ~i~~~~v~~~y~~~~-~~l~~--isl~i~~G~~~~ivG~sGsGKSTll~~l~g~------------~~p~~G~i~~~g~~ 418 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKK-PVLKD--ITFHIKPGQKVALVGPTGSGKTTIVNLLMRF------------YDVDRGQILVDGID 418 (598)
T ss_dssp CEEEEEEECCSSSSS-CSCCS--EEEECCTTCEEEEECCTTSSTTHHHHHHTTS------------SCCSEEEEEETTEE
T ss_pred eEEEEEEEEECCCCC-ccccc--eEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------cCCCCeEEEECCEE
Confidence 467788888886532 46765 9999999999999999999999999999999 99999999999976
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HH---------HHHHH-----------HHHHHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LV---------KELAQ-----------MLERQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~---------~~l~~-----------~~~~~ls~g 233 (441)
........++...++.+|. ..+|. .|++||+.++.. .+ .++.+ .....||+|
T Consensus 419 i~~~~~~~~r~~i~~v~Q~--~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG 495 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQD--TILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQG 495 (598)
T ss_dssp GGGSCHHHHHHHEEEECTT--CCCCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHH
T ss_pred hhhCCHHHHHhceEEEeCC--Ccccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHH
Confidence 5332211222223344444 45564 599999976421 11 11111 122469999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+||+++ +|+|| +++||+...+.+.+.++++..+ ++|+++|+ +.... .||++.++ ++|+
T Consensus 496 q~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~-----l~~~~-~~d~i~~l---~~G~ 566 (598)
T 3qf4_B 496 QRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHR-----LNTIK-NADLIIVL---RDGE 566 (598)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCC-----TTHHH-HCSEEEEE---CSSS
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecC-----HHHHH-cCCEEEEE---ECCE
Confidence 9999876 99999 9999999999999999887544 99999999 55443 48999999 9999
Q ss_pred eeeCChHHH
Q 013511 302 VVSRNSKVR 310 (441)
Q Consensus 302 vv~~~~~~~ 310 (441)
+++.++...
T Consensus 567 i~~~g~~~~ 575 (598)
T 3qf4_B 567 IVEMGKHDE 575 (598)
T ss_dssp EEECSCHHH
T ss_pred EEEECCHHH
Confidence 999887543
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=7.5e-25 Score=232.81 Aligned_cols=186 Identities=17% Similarity=0.238 Sum_probs=140.5
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|+++.|++....++++ +||++++|++++|+||||||||||+|+|+|+ ++|++|+|.++|.+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~--isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~------------~~~~~G~i~i~g~~ 406 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSG--VNFSVKPGSLVAVLGETGSGKSTLMNLIPRL------------IDPERGRVEVDELD 406 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEE--EEEEECTTCEEEEECSSSSSHHHHHHTTTTS------------SCCSEEEEEESSSB
T ss_pred cEEEEEEEEEcCCCCCcceec--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------ccCCCcEEEECCEE
Confidence 577888888886543457776 9999999999999999999999999999999 99999999999976
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHHHH------HHHH--------------HHHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVKEL------AQML--------------ERQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~~l------~~~~--------------~~~ls~g 233 (441)
........++. .+.+.+|...+|. .|++||+.++.. .+.+. .+.+ ...||+|
T Consensus 407 i~~~~~~~~r~--~i~~v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgG 483 (587)
T 3qf4_A 407 VRTVKLKDLRG--HISAVPQETVLFS-GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGG 483 (587)
T ss_dssp GGGBCHHHHHH--HEEEECSSCCCCS-EEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHH
T ss_pred cccCCHHHHHh--heEEECCCCcCcC-ccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHH
Confidence 53322112222 2334444445665 499999876421 11111 1111 1358999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+||+++ +|+|| ++++|+...+.+.+.++++..+ ++|+++|+ +... ..||++.++ ++|+
T Consensus 484 qrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~-----l~~~-~~~d~i~vl---~~G~ 554 (587)
T 3qf4_A 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQK-----IPTA-LLADKILVL---HEGK 554 (587)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESC-----HHHH-TTSSEEEEE---ETTE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecC-----hHHH-HhCCEEEEE---ECCE
Confidence 9999875 99999 9999999999999999987654 99999999 7665 479999999 8999
Q ss_pred eeeCChHHH
Q 013511 302 VVSRNSKVR 310 (441)
Q Consensus 302 vv~~~~~~~ 310 (441)
+++.++...
T Consensus 555 i~~~g~~~e 563 (587)
T 3qf4_A 555 VAGFGTHKE 563 (587)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 998886443
No 42
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.87 E-value=6.9e-25 Score=233.06 Aligned_cols=186 Identities=22% Similarity=0.330 Sum_probs=139.2
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.+++++|+++.|++....++++ +||++++|++++|+||||||||||+|+|+|+ ++|++|+|.++|.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~--v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~------------~~p~~G~i~~~g~ 405 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRN--INLKIPAGKTVALVGRSGSGKSTIASLITRF------------YDIDEGHILMDGH 405 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEE--EEEEECTTCEEEEEECTTSSHHHHHHHHTTT------------TCCSEEEEEETTE
T ss_pred CcEEEEEEEEEcCCCCCccccc--eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc------------cCCCCCeEEECCE
Confidence 3678889999997421246766 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH------HHHHHH---------HHHHH-----------HHhc
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK------VLVKEL---------AQMLE-----------RQFN 231 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~------~~~~~l---------~~~~~-----------~~ls 231 (441)
+........++ ..+.+.+|...+|. .|++||+.++. ..+.+. .+..+ ..||
T Consensus 406 ~~~~~~~~~~~--~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LS 482 (582)
T 3b60_A 406 DLREYTLASLR--NQVALVSQNVHLFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482 (582)
T ss_dssp ETTTBCHHHHH--HTEEEECSSCCCCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred EccccCHHHHH--hhCeEEccCCcCCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCC
Confidence 54321111111 23444444445666 49999998753 111111 11111 3599
Q ss_pred cCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 232 GNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 232 ~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
+||+||+++ +|+|| +++||+...+.+.+.++++..+ ++|+++|+ +... +.||++.++ ++
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~-----~~~~-~~~d~i~~l---~~ 553 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR-----LSTI-EQADEIVVV---ED 553 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSC-----GGGT-TTCSEEEEE---ET
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc-----HHHH-HhCCEEEEE---EC
Confidence 999999876 99999 9999999999999999887544 99999999 5544 469999999 89
Q ss_pred CCeeeCChHH
Q 013511 300 GGVVSRNSKV 309 (441)
Q Consensus 300 g~vv~~~~~~ 309 (441)
|++++.++..
T Consensus 554 G~i~~~g~~~ 563 (582)
T 3b60_A 554 GIIVERGTHS 563 (582)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEecCHH
Confidence 9998877643
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.86 E-value=1.5e-23 Score=203.42 Aligned_cols=168 Identities=14% Similarity=0.224 Sum_probs=114.4
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+++++.|+++.+ ..++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~--isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl------------~~p~~G~I~~~g 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKD--INFKIERGQLLAVAGSTGAGKTSLLMMIMGE------------LEPSEGKIKHSG 99 (290)
T ss_dssp ------------C----CCSEEE--EEEEECTTCEEEEEESTTSSHHHHHHHHTTS------------SCEEEEEEECCS
T ss_pred CceEEEEEEEEcC----ceEEEe--eEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCCcEEEECC
Confidence 4578899998852 246765 9999999999999999999999999999999 999999999998
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH----HHHH---------HHHHHH-----------HHHhcc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK----VLVK---------ELAQML-----------ERQFNG 232 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~----~~~~---------~l~~~~-----------~~~ls~ 232 (441)
.+. +.+|.+ .+|+. |+.+|+. .. .... +..+.. ...||+
T Consensus 100 ~i~-------------~v~Q~~--~l~~~-tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSg 162 (290)
T 2bbs_A 100 RIS-------------FCSQNS--WIMPG-TIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSG 162 (290)
T ss_dssp CEE-------------EECSSC--CCCSS-BHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCH
T ss_pred EEE-------------EEeCCC--ccCcc-cHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCH
Confidence 422 222222 34443 7777775 21 0011 111111 146999
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHH-HHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHA-IDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~l-i~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
||+||+++ +|+|| +++||+..++.+.+. ++++.. .+||+++|+ +.... .||++.++ ++
T Consensus 163 Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd-----~~~~~-~~d~i~~l---~~ 233 (290)
T 2bbs_A 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK-----MEHLK-KADKILIL---HE 233 (290)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCC-----HHHHH-HSSEEEEE---ET
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecC-----HHHHH-cCCEEEEE---EC
Confidence 99999875 99999 999999999999886 445543 399999999 55443 48999888 78
Q ss_pred CCeeeCChH
Q 013511 300 GGVVSRNSK 308 (441)
Q Consensus 300 g~vv~~~~~ 308 (441)
|.++..++.
T Consensus 234 G~i~~~g~~ 242 (290)
T 2bbs_A 234 GSSYFYGTF 242 (290)
T ss_dssp TEEEEEECH
T ss_pred CeEEEeCCH
Confidence 888876653
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.85 E-value=3.6e-24 Score=228.08 Aligned_cols=182 Identities=20% Similarity=0.270 Sum_probs=135.4
Q ss_pred hhHHHHHHHHhhh-hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 100 VSYVNVNAVLEGR-RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 100 l~~~nl~~~~~~~-~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
++++|+++.|++. ...++++ +||++++|++++|+||||||||||+|+|+|+ ++|++|+|.++|..
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~--isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~------------~~p~~G~i~~~g~~ 407 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQD--FSLSIPSGSVTALVGPSGSGKSTVLSLLLRL------------YDPASGTISLDGHD 407 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEE--EEEEECTTCEEEEECCTTSSSTHHHHHHTTS------------SCCSEEEEEETTEE
T ss_pred EEEEEEEEEeCCCCCCccccc--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------cCCCCcEEEECCEE
Confidence 6677888888643 1246765 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH--------HHHHHHHH---------HH-----------HHh
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV--------LVKELAQM---------LE-----------RQF 230 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~--------~~~~l~~~---------~~-----------~~l 230 (441)
........++ ..+.+.+|...+|. .|++||+.++.. .+.+..+. .+ ..|
T Consensus 408 i~~~~~~~~~--~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~L 484 (595)
T 2yl4_A 408 IRQLNPVWLR--SKIGTVSQEPILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 484 (595)
T ss_dssp TTTBCHHHHH--HSEEEECSSCCCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCC
T ss_pred hhhCCHHHHH--hceEEEccCCcccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcC
Confidence 4321111111 22444444445665 599999977421 11221111 11 458
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
|+||+||+++ +|+|| +++||+...+.+.+.++++.. .++|+++|+ +.... .||++.++ +
T Consensus 485 SgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~-----~~~~~-~~d~i~~l---~ 555 (595)
T 2yl4_A 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHR-----LSTIK-NANMVAVL---D 555 (595)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCC-----HHHHH-HSSEEEEE---E
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHHH-cCCEEEEE---E
Confidence 9999999876 99999 999999999999999988744 499999999 65553 58999998 8
Q ss_pred CCCeeeCCh
Q 013511 299 SGGVVSRNS 307 (441)
Q Consensus 299 ~g~vv~~~~ 307 (441)
+|++++.++
T Consensus 556 ~G~i~~~g~ 564 (595)
T 2yl4_A 556 QGKITEYGK 564 (595)
T ss_dssp TTEEEEEEC
T ss_pred CCEEEEECC
Confidence 898887654
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.84 E-value=1.5e-23 Score=240.71 Aligned_cols=186 Identities=20% Similarity=0.269 Sum_probs=141.9
Q ss_pred chhHHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
-++++|++++|..+. ..++++ +||++++|++++|||++|||||||+++|.++ +||.+|+|.++|.
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~--isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl------------~~p~~G~I~iDG~ 1141 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKG--LSFSVEPGQTLALVGPSGCGKSTVVALLERF------------YDTLGGEIFIDGS 1141 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEE--EEEEECTTCEEEEECSTTSSTTSHHHHHTTS------------SCCSSSEEEETTE
T ss_pred eEEEEEEEEeCCCCCCCccccc--eeEEECCCCEEEEECCCCChHHHHHHHHhcC------------ccCCCCEEEECCE
Confidence 367888999996542 247876 9999999999999999999999999999999 9999999999998
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH-------HHHHH---------HHHHHH-----------HHh
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK-------VLVKE---------LAQMLE-----------RQF 230 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~-------~~~~~---------l~~~~~-----------~~l 230 (441)
++.....+.++...++. +|..++|. -|+++|+.++. ..+.+ +....+ ..|
T Consensus 1142 di~~i~~~~lR~~i~~V--~Qdp~LF~-gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~L 1218 (1321)
T 4f4c_A 1142 EIKTLNPEHTRSQIAIV--SQEPTLFD-CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQL 1218 (1321)
T ss_dssp ETTTBCHHHHHTTEEEE--CSSCCCCS-EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSS
T ss_pred EhhhCCHHHHHhheEEE--CCCCEeeC-ccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCccc
Confidence 76543333333333444 44445554 49999986542 11111 111111 248
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
|+||+||+++ +|+|| |+.||...-+.+.+.|++...+ |+|+++|. +... +.||+|.|+ +
T Consensus 1219 SgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHR-----LsTi-~~aD~I~Vl---d 1289 (1321)
T 4f4c_A 1219 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHR-----LNTV-MNADCIAVV---S 1289 (1321)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSS-----SSTT-TTCSEEEEE---S
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccC-----HHHH-HhCCEEEEE---E
Confidence 9999998775 99999 9999999999999999887555 99999998 6544 578999999 9
Q ss_pred CCCeeeCChHHH
Q 013511 299 SGGVVSRNSKVR 310 (441)
Q Consensus 299 ~g~vv~~~~~~~ 310 (441)
+|++++.|++..
T Consensus 1290 ~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQ 1301 (1321)
T ss_dssp SSSEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 999999997554
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.81 E-value=1.1e-22 Score=232.97 Aligned_cols=185 Identities=17% Similarity=0.237 Sum_probs=139.0
Q ss_pred chhHHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
-++++|+++.|++.. ..++++ +||++++|++++|+||||||||||+++|+|+ ++|++|+|.++|.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~--isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~------------~~~~~G~i~i~g~ 452 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKG--LNLKVKSGQTVALVGNSGCGKSTTVQLMQRL------------YDPLDGMVSIDGQ 452 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEE--EEEEECTTCEEEEECCSSSSHHHHHHHTTTS------------SCCSEEEEEETTE
T ss_pred eEEEEEEEEEcCCCCCCcceec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCE
Confidence 367788888886532 347776 9999999999999999999999999999999 9999999999998
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHHH---------HHHHHH-----------HHhcc
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVKE---------LAQMLE-----------RQFNG 232 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~~---------l~~~~~-----------~~ls~ 232 (441)
++.......++.. +.+.+|...+|.. |++||+.++.. .+.+ ....++ ..||+
T Consensus 453 ~i~~~~~~~~r~~--i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 529 (1284)
T 3g5u_A 453 DIRTINVRYLREI--IGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSG 529 (1284)
T ss_dssp EGGGSCHHHHHHH--EEEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCH
T ss_pred EHHhCCHHHHHhh--eEEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCH
Confidence 6533221122222 3334444456654 99999988631 1111 111111 15899
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
||+||+++ +|+|| |+.||+...+.+.+.++....+ ++|+++|+ +.... .||++.++ ++|
T Consensus 530 Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~-----l~~i~-~~d~i~vl---~~G 600 (1284)
T 3g5u_A 530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHR-----LSTVR-NADVIAGF---DGG 600 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSC-----HHHHT-TCSEEEEC---SSS
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecC-----HHHHH-cCCEEEEE---ECC
Confidence 99999876 99999 9999999988998888876544 99999999 77664 59999999 999
Q ss_pred CeeeCChHH
Q 013511 301 GVVSRNSKV 309 (441)
Q Consensus 301 ~vv~~~~~~ 309 (441)
.+++.++..
T Consensus 601 ~i~~~g~~~ 609 (1284)
T 3g5u_A 601 VIVEQGNHD 609 (1284)
T ss_dssp CCCCEECHH
T ss_pred EEEEECCHH
Confidence 999887643
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.81 E-value=3.6e-22 Score=228.81 Aligned_cols=185 Identities=17% Similarity=0.255 Sum_probs=139.0
Q ss_pred chhHHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.++++|+++.|++.. ..++++ +||++++|++++|+||||||||||+++|+|+ .+|.+|+|.++|.
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~--vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~------------~~p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQG--LSLEVKKGQTLALVGSSGCGKSTVVQLLERF------------YDPMAGSVFLDGK 1095 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSS--CCEEECSSSEEEEECSSSTTHHHHHHHHTTS------------SCCSEEEEESSSS
T ss_pred cEEEEEEEEECCCCCCCeeecc--eeEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------cCCCCCEEEECCE
Confidence 467788888886532 246765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH-------HHHHH---------HHHHHH-----------HHh
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK-------VLVKE---------LAQMLE-----------RQF 230 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~-------~~~~~---------l~~~~~-----------~~l 230 (441)
++.......++...++.+|.+ .+| +.|++||+.++. ..+.+ +.+..+ ..|
T Consensus 1096 ~i~~~~~~~~r~~i~~v~Q~~--~l~-~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~L 1172 (1284)
T 3g5u_A 1096 EIKQLNVQWLRAQLGIVSQEP--ILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172 (1284)
T ss_dssp CTTSSCHHHHTTSCEEEESSC--CCC-SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSS
T ss_pred EcccCCHHHHHhceEEECCCC--ccc-cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCcc
Confidence 653322222333334444444 444 469999986532 11111 111111 258
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
|+||+||+++ +|+|| |++||+...+.+.+.+++...+ +||+++|+ +... +.||++.++ +
T Consensus 1173 SgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~-----l~~i-~~~dri~vl---~ 1243 (1284)
T 3g5u_A 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHR-----LSTI-QNADLIVVI---Q 1243 (1284)
T ss_dssp CHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSC-----TTGG-GSCSEEEEE---E
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecC-----HHHH-HcCCEEEEE---E
Confidence 9999999876 99999 9999999999999999887654 89999999 6655 469999999 8
Q ss_pred CCCeeeCChHH
Q 013511 299 SGGVVSRNSKV 309 (441)
Q Consensus 299 ~g~vv~~~~~~ 309 (441)
+|++++.++..
T Consensus 1244 ~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1244 NGKVKEHGTHQ 1254 (1284)
T ss_dssp TBEEEEEECHH
T ss_pred CCEEEEECCHH
Confidence 99999887644
No 48
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.80 E-value=2.3e-22 Score=231.01 Aligned_cols=184 Identities=20% Similarity=0.274 Sum_probs=138.9
Q ss_pred chhHHHHHHHHhhh-hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVLEGR-RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~~~~-~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
-++++|++++|+.. ...++++ +||++++|+.++|+||+|||||||+++|.|+ ++|.+|+|.++|.
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~--isl~i~~G~~vaivG~sGsGKSTll~ll~~~------------~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRG--MNLRVNAGQTVALVGSSGCGKSTIISLLLRY------------YDVLKGKITIDGV 480 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEE--EEEEECTTCEEEEEECSSSCHHHHHHHHTTS------------SCCSEEEEEETTE
T ss_pred cEEEEEeeeeCCCCCCCceeec--eEEeecCCcEEEEEecCCCcHHHHHHHhccc------------cccccCcccCCCc
Confidence 36788899999653 2357776 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHHH---------HHHHHH-----------HHhcc
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVKE---------LAQMLE-----------RQFNG 232 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~~---------l~~~~~-----------~~ls~ 232 (441)
++.....+.++. .+.+.+|...+| +.|++||+.++.. .+.+ ..+.++ ..|||
T Consensus 481 ~i~~~~~~~lr~--~i~~v~Q~~~Lf-~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSG 557 (1321)
T 4f4c_A 481 DVRDINLEFLRK--NVAVVSQEPALF-NCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSG 557 (1321)
T ss_dssp ETTTSCHHHHHH--HEEEECSSCCCC-SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCH
T ss_pred cchhccHHHHhh--cccccCCcceee-CCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCH
Confidence 653322222222 234444444444 4699999988632 1111 111111 14899
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
||+||+++ +|+|| ++.||......+.+.++.+.. .|+|+++|. +.. .+.||+|.++ ++|
T Consensus 558 GQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHr-----ls~-i~~aD~Iivl---~~G 628 (1321)
T 4f4c_A 558 GQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR-----LST-IRNADLIISC---KNG 628 (1321)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSC-----TTT-TTTCSEEEEE---ETT
T ss_pred HHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEccc-----HHH-HHhCCEEEEe---eCC
Confidence 99999876 99999 999999998899999988754 499999999 543 4679999999 899
Q ss_pred CeeeCChH
Q 013511 301 GVVSRNSK 308 (441)
Q Consensus 301 ~vv~~~~~ 308 (441)
++++.++.
T Consensus 629 ~ive~Gth 636 (1321)
T 4f4c_A 629 QVVEVGDH 636 (1321)
T ss_dssp EEEEEECH
T ss_pred eeeccCCH
Confidence 99998864
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.78 E-value=2.4e-20 Score=198.05 Aligned_cols=173 Identities=14% Similarity=0.110 Sum_probs=124.9
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+++++.|+++.|++. .++. +++++.+|++++|+||||||||||+|+|+|+ +.|++|+|.+..
T Consensus 355 ~~~l~~~~l~~~~~~~---~l~~--~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl------------~~p~~G~I~~~~ 417 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF---KLEV--EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV------------EEPTEGKVEWDL 417 (607)
T ss_dssp CEEEEECCEEEECSSC---EEEE--CCEEEETTCEEEEECCTTSSHHHHHHHHHTS------------SCCSBSCCCCCC
T ss_pred ceEEEEeceEEEecce---EEEe--cccccCCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEEee
Confidence 3467788888777652 3443 7788899999999999999999999999999 999999998622
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHH-HHH------HHHHH---------HHHHHHhccCccceeee
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELY-KVL------VKELA---------QMLERQFNGNAESRAAG 240 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~-~~~------~~~l~---------~~~~~~ls~g~~~r~~~ 240 (441)
. .++.+|. ..++...|+.+++... ... +.++. ++....||+||+||+.+
T Consensus 418 ~-------------i~~v~Q~--~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~i 482 (607)
T 3bk7_A 418 T-------------VAYKPQY--IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAI 482 (607)
T ss_dssp C-------------EEEECSS--CCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHH
T ss_pred E-------------EEEEecC--ccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 1 1222222 2234567887776543 111 11111 12234699999999876
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCC
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRN 306 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~ 306 (441)
+|+|| +++||+..+..+.++|+++. ..+||+++|| +..+...||++.++. .+.|.+...+
T Consensus 483 AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd-----~~~~~~~adrv~vl~-~~~g~~~~~g 556 (607)
T 3bk7_A 483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD-----VLMIDYVSDRLIVFE-GEPGRHGRAL 556 (607)
T ss_dssp HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHCSEEEEEE-EETTTEEEEC
T ss_pred HHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEEEc-CCcceEEecC
Confidence 99999 99999999999999999873 3499999999 777777899998884 2235554444
Q ss_pred h
Q 013511 307 S 307 (441)
Q Consensus 307 ~ 307 (441)
+
T Consensus 557 ~ 557 (607)
T 3bk7_A 557 P 557 (607)
T ss_dssp C
T ss_pred C
Confidence 3
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.77 E-value=4.1e-21 Score=201.37 Aligned_cols=162 Identities=15% Similarity=0.181 Sum_probs=119.7
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+++++.|+++.|++. .+.. .++++.+|++++|+||||||||||+|+|+|+ +.|++|+|.+++.
T Consensus 268 ~~l~~~~l~~~~~~~---~l~~--~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~~~ 330 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF---QLVV--DNGEAKEGEIIGILGPNGIGKTTFARILVGE------------ITADEGSVTPEKQ 330 (538)
T ss_dssp EEEEECCEEEEETTE---EEEE--CCEEEETTCEEEEECCTTSSHHHHHHHHTTS------------SCCSBCCEESSCC
T ss_pred ceEEEcceEEEECCE---EEEe--ccceECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCe
Confidence 456677777777653 2332 5788899999999999999999999999999 9999999998876
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH--------HH---------HHHHHHHHHHhccCccceeee
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV--------LV---------KELAQMLERQFNGNAESRAAG 240 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~--------~~---------~~l~~~~~~~ls~g~~~r~~~ 240 (441)
.+....... ......|+.+|+.+... .. ..+.++....||+||+||+.+
T Consensus 331 ~i~~~~q~~--------------~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~i 396 (538)
T 3ozx_A 331 ILSYKPQRI--------------FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYI 396 (538)
T ss_dssp CEEEECSSC--------------CCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHH
T ss_pred eeEeechhc--------------ccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHH
Confidence 443221111 11123455555543210 01 112334556799999999876
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
+|+|| |++||+..+..+.++|+++. ..+||+++|| +..+..+||++.++.
T Consensus 397 AraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd-----l~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 397 AATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD-----LSIHDYIADRIIVFK 460 (538)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHCSEEEEEE
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEEEe
Confidence 99999 99999999999999999874 3489999999 888888899999983
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.77 E-value=9.6e-21 Score=198.87 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=124.3
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+++++.|+++.|++. .++. ++|++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.+..
T Consensus 285 ~~~l~~~~l~~~~~~~---~l~~--~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl------------~~p~~G~i~~~~ 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF---RLEV--EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV------------EEPTEGKIEWDL 347 (538)
T ss_dssp CEEEEECCEEEEETTE---EEEE--CCEEEETTCEEEEECCTTSSHHHHHHHHHTS------------SCCSBCCCCCCC
T ss_pred CeEEEEeeEEEEECCE---EEEe--CccccCCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECc
Confidence 3567778887777652 3443 7888899999999999999999999999999 999999998622
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHH-HHH------HHH---------HHHHHHHHhccCccceeee
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELY-KVL------VKE---------LAQMLERQFNGNAESRAAG 240 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~-~~~------~~~---------l~~~~~~~ls~g~~~r~~~ 240 (441)
. .++.+|. ...+...|+.+++... ... +.+ +.++....||+||+||+.+
T Consensus 348 ~-------------i~~v~Q~--~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~l 412 (538)
T 1yqt_A 348 T-------------VAYKPQY--IKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAI 412 (538)
T ss_dssp C-------------EEEECSS--CCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHH
T ss_pred e-------------EEEEecC--CcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHH
Confidence 1 1222222 2233556777666543 111 111 1122345699999998876
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCC
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRN 306 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~ 306 (441)
+|+|| |++||...++.+.++|+++. ..+||+++|| +..+.+.||++.++. ...|.++..+
T Consensus 413 AraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd-----~~~~~~~~drv~vl~-~~~~~~~~~g 486 (538)
T 1yqt_A 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD-----VLMIDYVSDRLMVFE-GEPGKYGRAL 486 (538)
T ss_dssp HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC-----HHHHHHHCSEEEEEE-EETTTEEEEC
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEEEe-CCcceEeecC
Confidence 99999 99999999999999999874 3499999999 777777899998883 2235555444
Q ss_pred h
Q 013511 307 S 307 (441)
Q Consensus 307 ~ 307 (441)
+
T Consensus 487 ~ 487 (538)
T 1yqt_A 487 P 487 (538)
T ss_dssp C
T ss_pred C
Confidence 3
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.75 E-value=7e-21 Score=202.15 Aligned_cols=171 Identities=15% Similarity=0.074 Sum_probs=114.4
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc---------c
Q 013511 103 VNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI---------T 173 (441)
Q Consensus 103 ~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i---------~ 173 (441)
.|+++.|++.. .++++ ++ ++.+|++++|+||||||||||+|+|+|+ +.|++|++ .
T Consensus 95 ~~ls~~yg~~~-~~l~~--vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl------------l~p~~G~~~~~~~~~~~~ 158 (607)
T 3bk7_A 95 EDCVHRYGVNA-FVLYR--LP-IVKDGMVVGIVGPNGTGKTTAVKILAGQ------------LIPNLCEDNDSWDNVIRA 158 (607)
T ss_dssp GSEEEECSTTC-CEEEC--CC-CCCTTSEEEEECCTTSSHHHHHHHHTTS------------SCCCTTTTCCCHHHHHHH
T ss_pred CCeEEEECCCC-eeeCC--CC-CCCCCCEEEEECCCCChHHHHHHHHhCC------------CCCCCCccccccchhhhe
Confidence 67888886532 35655 88 8999999999999999999999999999 99999996 3
Q ss_pred CCceeeeeeccCcCCCCCCCCcccceEEEec---ccCccCCHHHH------HHHHH-----HHHHHHHHHhccCccceee
Q 013511 174 IPGCIAATPIELPIDPVEGIPLEMPLVYFFG---HATPSNNVELY------KVLVK-----ELAQMLERQFNGNAESRAA 239 (441)
Q Consensus 174 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~tv~en~~~~------~~~~~-----~l~~~~~~~ls~g~~~r~~ 239 (441)
+.|................+.+..+....++ ..++.+|+... ...++ .+.++....||+||+||++
T Consensus 159 ~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRva 238 (607)
T 3bk7_A 159 FRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVA 238 (607)
T ss_dssp TTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHH
T ss_pred eCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHH
Confidence 4554321110000000111111111100111 11555554321 11111 1233445679999999987
Q ss_pred e----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 240 G----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 240 ~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
+ +|+|| |++||+..++.+.++|+++.. .+||+++|+ +..+...+|++.++
T Consensus 239 IAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHd-----l~~~~~~adri~vl 301 (607)
T 3bk7_A 239 IAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD-----LAVLDYLSDVIHVV 301 (607)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHCSEEEEE
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecC-----hHHHHhhCCEEEEE
Confidence 6 99999 999999999999999988743 499999999 77666779999888
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.74 E-value=1.2e-20 Score=198.16 Aligned_cols=172 Identities=15% Similarity=0.051 Sum_probs=113.5
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc---------c
Q 013511 103 VNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI---------T 173 (441)
Q Consensus 103 ~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i---------~ 173 (441)
.|+++.|++.. .++++ +| ++.+|++++|+||||||||||+|+|+|+ +.|++|++ .
T Consensus 25 ~~ls~~yg~~~-~~l~~--vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl------------~~p~~G~~~~~~~~~~~~ 88 (538)
T 1yqt_A 25 EDCVHRYGVNA-FVLYR--LP-VVKEGMVVGIVGPNGTGKSTAVKILAGQ------------LIPNLCGDNDSWDGVIRA 88 (538)
T ss_dssp CCEEEECSTTC-CEEEC--CC-CCCTTSEEEEECCTTSSHHHHHHHHHTS------------SCCCTTTTCCSHHHHHHH
T ss_pred cCcEEEECCcc-ccccC--cC-cCCCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCccCcchhhhHHh
Confidence 47778886532 35655 88 8999999999999999999999999999 99999996 3
Q ss_pred CCceeeeeeccCcCCCCCCCCcccceEEEecc---cCccCCHHHHH--HHHHHH---------HHHHHHHhccCccceee
Q 013511 174 IPGCIAATPIELPIDPVEGIPLEMPLVYFFGH---ATPSNNVELYK--VLVKEL---------AQMLERQFNGNAESRAA 239 (441)
Q Consensus 174 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~tv~en~~~~~--~~~~~l---------~~~~~~~ls~g~~~r~~ 239 (441)
+.|................+.+..+....++. .++.+++.... ..+.++ .++....||+||+||+.
T Consensus 89 ~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~ 168 (538)
T 1yqt_A 89 FRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVA 168 (538)
T ss_dssp TTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHH
Confidence 55543211000000111122221111111111 14444432110 011111 23344579999999887
Q ss_pred e----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 240 G----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 240 ~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
+ ||+|| |++||+..++.+.++|++++. .+||+++|+ +....+.||++.+++
T Consensus 169 iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd-----~~~~~~~~dri~vl~ 232 (538)
T 1yqt_A 169 IAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD-----LAVLDYLSDIIHVVY 232 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHCSEEEEEE
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEEc
Confidence 6 99999 999999999999999988743 499999999 777767899998883
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.72 E-value=2.7e-20 Score=204.74 Aligned_cols=188 Identities=18% Similarity=0.206 Sum_probs=125.9
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+|+++.|+++.|++....++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.+.|
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~d--VSl~I~~GeivaIiGpNGSGKSTLLklLaGl------------l~P~sG~I~~~~ 734 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITD--INFQCSLSSRIAVIGPNGAGKSTLINVLTGE------------LLPTSGEVYTHE 734 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEE--EEEEEETTCEEEECSCCCHHHHHHHHHHTTS------------SCCSEEEEEECT
T ss_pred CceEEEEeeEEEeCCCCceeeec--cEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEEcC
Confidence 45899999999996532246665 9999999999999999999999999999999 999999998876
Q ss_pred eeeeeec-cCc-----------------------CCC----C--CCC--------------------------------C
Q 013511 177 CIAATPI-ELP-----------------------IDP----V--EGI--------------------------------P 194 (441)
Q Consensus 177 ~~~~~~~-~~~-----------------------~~~----~--~~~--------------------------------~ 194 (441)
.....++ +.+ .+. . ..+ .
T Consensus 735 ~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 735 NCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp TCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred ccceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 3100000 000 000 0 000 0
Q ss_pred cccceEE-----------EecccCccCCHHH--------HH----------------------HHHHHH-----------
Q 013511 195 LEMPLVY-----------FFGHATPSNNVEL--------YK----------------------VLVKEL----------- 222 (441)
Q Consensus 195 ~~~~~~~-----------~~g~~tv~en~~~--------~~----------------------~~~~~l----------- 222 (441)
++.+..+ .+..+++.+|..+ +. ..+.++
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 0000000 2233444444210 00 011111
Q ss_pred HHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCe
Q 013511 223 AQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNV 291 (441)
Q Consensus 223 ~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v 291 (441)
.+.....||+||+||+.+ ||+|| |++||+.....+.+.++++. .+||++||+ ++...+.||++
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g-~tVIiISHD-----~e~v~~l~DrV 968 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFE-GGVIIITHS-----AEFTKNLTEEV 968 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCS-SEEEEECSC-----HHHHTTTCCEE
T ss_pred cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhC-CEEEEEECC-----HHHHHHhCCEE
Confidence 122235699999998876 99999 99999999999999999885 489999999 77777889999
Q ss_pred EEEEecCCCCeeeCCh
Q 013511 292 DVVKLQKSGGVVSRNS 307 (441)
Q Consensus 292 ~vl~l~~~g~vv~~~~ 307 (441)
.++ ++|+++..+.
T Consensus 969 ivL---~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAV---KDGRMTPSGH 981 (986)
T ss_dssp ECC---BTTBCCC---
T ss_pred EEE---ECCEEEEeCC
Confidence 888 7888876554
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.68 E-value=7e-18 Score=182.02 Aligned_cols=174 Identities=15% Similarity=0.154 Sum_probs=94.2
Q ss_pred hhccCCCCCCCCCCCCEEEEECCCCCChhHHH---------------------HHHHHHHHHcCCccEEEeccCCCCccc
Q 013511 115 HAKASPSKDSDASQGPRVIVVGPTDSGKSTLS---------------------RMLLSWAAKLGWKPTFVDLDIGQGAIT 173 (441)
Q Consensus 115 ~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLl---------------------r~L~g~a~~~g~~~~~vDldp~~G~i~ 173 (441)
.++++ +||++.+|++++|+||||||||||+ +++.++ ..|+.|.|.
T Consensus 32 ~~L~~--vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l------------~~~~~~~i~ 97 (670)
T 3ux8_A 32 HNLKN--IDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQM------------EKPDVDAIE 97 (670)
T ss_dssp TTCCS--EEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------------------CCCSEEE
T ss_pred cceec--cEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccc------------ccCCcccee
Confidence 46765 9999999999999999999999998 777776 667655443
Q ss_pred C-------CceeeeeeccCc-------------CCCCCCCCcccceEEEecccCccCCHHHHHHH-------------HH
Q 013511 174 I-------PGCIAATPIELP-------------IDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-------------VK 220 (441)
Q Consensus 174 ~-------~G~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-------------~~ 220 (441)
. +|.......... +....+..++.+....+..+|+.+|+.++... ..
T Consensus 98 ~~~~~i~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~ 177 (670)
T 3ux8_A 98 GLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILR 177 (670)
T ss_dssp SCCCEEEESSCC-----CCBHHHHTTCC-------------------------CC-------------------------
T ss_pred ccccceEecCchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHH
Confidence 3 332111000000 00001111112222335667899998764211 00
Q ss_pred H-------H---------HHHHHHHhccCccceee------------eEEEeC-CCCCCchhHHHHHHHHHHcCC--CEE
Q 013511 221 E-------L---------AQMLERQFNGNAESRAA------------GMVINT-MGWIEGVGYELLLHAIDTFKA--NVV 269 (441)
Q Consensus 221 ~-------l---------~~~~~~~ls~g~~~r~~------------~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~V 269 (441)
+ + .++....||+||+||++ ++|+|| +++||+..++.+.++|++++. .+|
T Consensus 178 ~~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tv 257 (670)
T 3ux8_A 178 EIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL 257 (670)
T ss_dssp -CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 0 0 11234569999998754 599999 999999999999999998853 499
Q ss_pred EEeCCchhhHHHHHHhcCCCCeEEEEe---cCCCCeeeCChH
Q 013511 270 LVLGQEKLFSMLRDVLKNRPNVDVVKL---QKSGGVVSRNSK 308 (441)
Q Consensus 270 ivi~h~~l~~~l~~~~~~~~~v~vl~l---~~~g~vv~~~~~ 308 (441)
|+++|| +... ..||++.++.- -+.|.++..++.
T Consensus 258 i~vtHd-----~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~ 293 (670)
T 3ux8_A 258 IVVEHD-----EDTM-LAADYLIDIGPGAGIHGGEVVAAGTP 293 (670)
T ss_dssp EEECCC-----HHHH-HHCSEEEEECSSSGGGCCSEEEEECH
T ss_pred EEEeCC-----HHHH-hhCCEEEEecccccccCCEEEEecCH
Confidence 999999 5543 35899877721 146777766653
No 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.67 E-value=4e-18 Score=178.69 Aligned_cols=152 Identities=13% Similarity=0.092 Sum_probs=99.2
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc-----------cCCceeeeeeccCcCCCCCCCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI-----------TIPGCIAATPIELPIDPVEGIP 194 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i-----------~~~G~~~~~~~~~~~~~~~~~~ 194 (441)
.++|++++|+||||||||||+|+|+|+ +.|++|++ .+.|...............++.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl------------~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~ 89 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGE------------IIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIV 89 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTS------------SCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEE
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchh
Confidence 579999999999999999999999999 99999998 3445322111000000001111
Q ss_pred cccce----EEEecccCccCCHHHH------HHHH-----HHHHHHHHHHhccCccceeee----------EEEeC-CCC
Q 013511 195 LEMPL----VYFFGHATPSNNVELY------KVLV-----KELAQMLERQFNGNAESRAAG----------MVINT-MGW 248 (441)
Q Consensus 195 ~~~~~----~~~~g~~tv~en~~~~------~~~~-----~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~ 248 (441)
...+. ..++ ..++.+++... ...+ ..+.++....||+||+||+.+ +|+|| |++
T Consensus 90 ~~~~~~~~~~~~~-~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~ 168 (538)
T 3ozx_A 90 HKIQYVEYASKFL-KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSY 168 (538)
T ss_dssp EECSCTTGGGTTC-CSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTT
T ss_pred hccchhhhhhhhc-cCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 10000 0011 11232222110 0111 112234456799999998875 99999 999
Q ss_pred CCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 249 IEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 249 lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
||+..+..+.++|++++.. +||+++|+ +......||++.+++
T Consensus 169 LD~~~~~~l~~~l~~l~~g~tii~vsHd-----l~~~~~~~d~i~vl~ 211 (538)
T 3ozx_A 169 LDVRERMNMAKAIRELLKNKYVIVVDHD-----LIVLDYLTDLIHIIY 211 (538)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEECSC-----HHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEEeC-----hHHHHhhCCEEEEec
Confidence 9999999999999998644 99999999 777777899998883
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.3e-18 Score=184.41 Aligned_cols=153 Identities=12% Similarity=0.122 Sum_probs=105.0
Q ss_pred CCCCCCCC-----CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcc
Q 013511 122 KDSDASQG-----PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLE 196 (441)
Q Consensus 122 vsl~i~~G-----~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~ 196 (441)
++|++.+| ++++|+||||||||||+|+|+|+ +.|++|+.. .+. ++.+.
T Consensus 366 vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl------------~~p~~G~~~-~~~--------------~i~~~ 418 (608)
T 3j16_B 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA------------LKPDEGQDI-PKL--------------NVSMK 418 (608)
T ss_dssp CEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTS------------SCCSBCCCC-CSC--------------CEEEE
T ss_pred eEEEEecCccccceEEEEECCCCCcHHHHHHHHhcC------------CCCCCCcCc-cCC--------------cEEEe
Confidence 78877777 89999999999999999999999 999999732 211 11111
Q ss_pred cceEEEecccCccCCHHHHH-------HHHHHH---------HHHHHHHhccCccceeee----------EEEeC-CCCC
Q 013511 197 MPLVYFFGHATPSNNVELYK-------VLVKEL---------AQMLERQFNGNAESRAAG----------MVINT-MGWI 249 (441)
Q Consensus 197 ~~~~~~~g~~tv~en~~~~~-------~~~~~l---------~~~~~~~ls~g~~~r~~~----------lIlDE-~~~l 249 (441)
++........|+.+++.... ....++ .++....||+||+||+++ +|+|| |++|
T Consensus 419 ~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gL 498 (608)
T 3j16_B 419 PQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYL 498 (608)
T ss_dssp CSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTC
T ss_pred cccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCC
Confidence 11111111224444332110 011111 122335699999999876 99999 9999
Q ss_pred CchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 250 EGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 250 D~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
|+..+..+.++|+++. ..+||+++|| +..+...||++.++. ...|.++..++
T Consensus 499 D~~~~~~i~~ll~~l~~~~g~tviivtHd-----l~~~~~~aDrvivl~-~~~g~~~~~g~ 553 (608)
T 3j16_B 499 DSEQRIICSKVIRRFILHNKKTAFIVEHD-----FIMATYLADKVIVFE-GIPSKNAHARA 553 (608)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEECSC-----HHHHHHHCSEEEECE-EETTTEEECCC
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEEEe-CCCCeEEecCC
Confidence 9999999999998874 3499999999 888888899998873 12467766654
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.66 E-value=5.1e-18 Score=186.74 Aligned_cols=163 Identities=12% Similarity=0.061 Sum_probs=113.6
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
+...|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|- ++ .|...
T Consensus 436 L~~~~ls~~yg~~--~iL~~--vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG------------------~i--~g~~~ 491 (986)
T 2iw3_A 436 LCNCEFSLAYGAK--ILLNK--TQLRLKRARRYGICGPNGCGKSTLMRAIANG------------------QV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEETTE--EEEEE--EEEEEETTCEEEEECSTTSSHHHHHHHHHHT------------------CS--TTCCC
T ss_pred eEEeeEEEEECCE--EeEec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------------Cc--CCCcc
Confidence 3444777888764 46765 9999999999999999999999999999961 11 12100
Q ss_pred eeeccCcCCCCCCCCcccce-EEEecccCccCCHHHH----HHHHH----------HHHHHHHHHhccCccceeee----
Q 013511 180 ATPIELPIDPVEGIPLEMPL-VYFFGHATPSNNVELY----KVLVK----------ELAQMLERQFNGNAESRAAG---- 240 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~tv~en~~~~----~~~~~----------~l~~~~~~~ls~g~~~r~~~---- 240 (441)
... ..+.++.+. ..++..+|+.+|+.+. ...+. .+.++....||+||+||+.+
T Consensus 492 ----~~~----~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL 563 (986)
T 2iw3_A 492 ----QEE----CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAV 563 (986)
T ss_dssp ----TTT----SCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHH
T ss_pred ----ccc----eeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHH
Confidence 000 011222221 1245566666666420 11111 22233445799999999876
Q ss_pred ------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 241 ------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 241 ------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
||+|| +++||+.+++.+.++|++ ...+||+++|+ +....+.||++.++ ++|+++
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHd-----l~~l~~~adrii~L---~~G~iv 624 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITISHD-----SVFLDNVCEYIINY---EGLKLR 624 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSC-----HHHHHHHCSEEEEE---ETTEEE
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEEECC-----HHHHHHhCCEEEEE---ECCeee
Confidence 99999 999999999999999999 55599999999 77776789999888 788875
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.1e-17 Score=177.52 Aligned_cols=170 Identities=14% Similarity=0.074 Sum_probs=105.4
Q ss_pred HHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCccc----------
Q 013511 104 NVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAIT---------- 173 (441)
Q Consensus 104 nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~---------- 173 (441)
|++++|+... ..+.. ++ .+.+|++++|+||||||||||+|+|+|+ +.|++|+|.
T Consensus 82 ~~~~~Y~~~~-~~l~~--l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gl------------l~P~~G~i~~~~~~~~~~~ 145 (608)
T 3j16_B 82 HVTHRYSANS-FKLHR--LP-TPRPGQVLGLVGTNGIGKSTALKILAGK------------QKPNLGRFDDPPEWQEIIK 145 (608)
T ss_dssp TEEEECSTTS-CEEEC--CC-CCCTTSEEEEECCTTSSHHHHHHHHHTS------------SCCCTTTTCCSSCHHHHHH
T ss_pred CeEEEECCCc-eeecC--CC-CCCCCCEEEEECCCCChHHHHHHHHhcC------------CCCCCceEecccchhhhhh
Confidence 5566665432 23332 33 5789999999999999999999999999 999999983
Q ss_pred -CCceeeeeeccCcCCCCCCCCcccceEE-----Eec-ccCccCCHHHH----HHHHHHHH---------HHHHHHhccC
Q 013511 174 -IPGCIAATPIELPIDPVEGIPLEMPLVY-----FFG-HATPSNNVELY----KVLVKELA---------QMLERQFNGN 233 (441)
Q Consensus 174 -~~G~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g-~~tv~en~~~~----~~~~~~l~---------~~~~~~ls~g 233 (441)
+.|..................+..+... +.+ ..++.+++... ...+.++. ++....||+|
T Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 225 (608)
T 3j16_B 146 YFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGG 225 (608)
T ss_dssp HTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHH
T ss_pred eecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHH
Confidence 3332211000000000000000000000 000 00111111110 01111222 2334569999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
|+||+++ +|+|| +++||+..+..+.++|++++.. +||+++|+ +..+...+|++.++
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd-----l~~~~~~~drv~vl 294 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD-----LSVLDYLSDFVCII 294 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSC-----HHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEEE
Confidence 9998876 99999 9999999999999999998643 99999999 77777789999988
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.56 E-value=2e-16 Score=170.64 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=59.6
Q ss_pred HHHHhccCccceee-------------eEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCC
Q 013511 226 LERQFNGNAESRAA-------------GMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRP 289 (441)
Q Consensus 226 ~~~~ls~g~~~r~~-------------~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~ 289 (441)
....||+||+||++ ++|+|| |++||+.....+.+++++++. .+||+++|+ +..+ +.||
T Consensus 540 ~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd-----~~~~-~~~d 613 (670)
T 3ux8_A 540 PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN-----LDVI-KTAD 613 (670)
T ss_dssp CGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC-----HHHH-TTCS
T ss_pred CchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----HHHH-HhCC
Confidence 34579999998754 599999 999999999999999998853 399999999 7655 5699
Q ss_pred CeEEEEe---cCCCCeeeCCh
Q 013511 290 NVDVVKL---QKSGGVVSRNS 307 (441)
Q Consensus 290 ~v~vl~l---~~~g~vv~~~~ 307 (441)
++.++.- .+.|.++..++
T Consensus 614 ~i~~l~~~~g~~~G~i~~~g~ 634 (670)
T 3ux8_A 614 YIIDLGPEGGDRGGQIVAVGT 634 (670)
T ss_dssp EEEEEESSSGGGCCEEEEEEC
T ss_pred EEEEecCCcCCCCCEEEEecC
Confidence 9877621 04677877665
No 61
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.50 E-value=2.9e-14 Score=136.80 Aligned_cols=125 Identities=15% Similarity=0.117 Sum_probs=74.1
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccC
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSN 210 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~e 210 (441)
.++|+||||||||||+|+|+|+ ..|++|++.++|..... .. ....+.+..+...++..+|+.|
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~------------~~~~~G~i~~~g~~i~~---~~--~~~~i~~v~q~~~~~~~ltv~d 66 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS------------QVSRKASSWNREEKIPK---TV--EIKAIGHVIEEGGVKMKLTVID 66 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH------------HC------------CCC---CC--SCCEEEESCC----CCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHhCC------------CCCCCCccccCCcccCc---ce--eeeeeEEEeecCCCcCCceEEe
Confidence 5899999999999999999999 89999999999964311 11 1223444444456777888888
Q ss_pred CHHHHHH-------------HHHHHHHHHHHHhccCccceeee-------EEEeC-CCCCCchhHHHHHHHHHHcCCCEE
Q 013511 211 NVELYKV-------------LVKELAQMLERQFNGNAESRAAG-------MVINT-MGWIEGVGYELLLHAIDTFKANVV 269 (441)
Q Consensus 211 n~~~~~~-------------~~~~l~~~~~~~ls~g~~~r~~~-------lIlDE-~~~lD~~~~~~l~~li~~~~~~~V 269 (441)
|+.++.. ...++.+.....||+|++||+.+ +++|+ +.++|+...+.+..+- +. .+.|
T Consensus 67 ~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~-~~-~~vI 144 (270)
T 3sop_A 67 TPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLS-KV-VNII 144 (270)
T ss_dssp CCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHH-TT-SEEE
T ss_pred chhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHH-hc-CcEE
Confidence 8766421 12345566778899999988654 88999 6889987755544443 32 4466
Q ss_pred EEeCC
Q 013511 270 LVLGQ 274 (441)
Q Consensus 270 ivi~h 274 (441)
+++++
T Consensus 145 ~Vi~K 149 (270)
T 3sop_A 145 PVIAK 149 (270)
T ss_dssp EEETT
T ss_pred EEEec
Confidence 66654
No 62
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.47 E-value=2.2e-14 Score=132.37 Aligned_cols=118 Identities=10% Similarity=0.078 Sum_probs=70.9
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEEEecc
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGH 205 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 205 (441)
+.+|++++|+||||||||||+|+|+|+ .|++|+|. +.... ..........++.++.+
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-------------~p~~G~I~--~~~~~-~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-------------ALQSKQVS--RIILT-RPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-------------HHHTTSCS--EEEEE-ECSCCTTCCCCSSCC---------
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-------------CCcCCeee--eEEec-CCchhhhcceEEecCCH-------
Confidence 578999999999999999999999996 46778884 22221 11111222233333332
Q ss_pred cCccCCH-HHHHH---HHH-----HHHHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC
Q 013511 206 ATPSNNV-ELYKV---LVK-----ELAQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK 265 (441)
Q Consensus 206 ~tv~en~-~~~~~---~~~-----~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~ 265 (441)
.+|+ .+... .+. ...+....+ ..||+||+++ +|+|| +++ .++.+.+++++++
T Consensus 76 ---~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~ 147 (208)
T 3b85_A 76 ---NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLG 147 (208)
T ss_dssp -------CTTTHHHHHHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBC
T ss_pred ---HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhc
Confidence 2333 12110 000 011112222 4499998876 99999 666 7888899999884
Q ss_pred CC-EEEEeCCc
Q 013511 266 AN-VVLVLGQE 275 (441)
Q Consensus 266 ~~-~Vivi~h~ 275 (441)
.. +|| ++|+
T Consensus 148 ~g~tii-vtHd 157 (208)
T 3b85_A 148 FGSKMV-VTGD 157 (208)
T ss_dssp TTCEEE-EEEC
T ss_pred CCCEEE-EECC
Confidence 33 788 9999
No 63
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.46 E-value=1e-15 Score=148.85 Aligned_cols=154 Identities=15% Similarity=0.134 Sum_probs=91.6
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
+++++|+++.|+ . .++++ +++++++|++++|+||||||||||+++|+|+ + +|+|...+..
T Consensus 101 ~i~~~~vs~~y~-~--~vL~~--vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl------------~---~G~I~~~v~q 160 (305)
T 2v9p_A 101 FFNYQNIELITF-I--NALKL--WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF------------L---GGSVLSFANH 160 (305)
T ss_dssp HHHHTTCCHHHH-H--HHHHH--HHHTCTTCSEEEEECSSSSSHHHHHHHHHHH------------H---TCEEECGGGT
T ss_pred eEEEEEEEEEcC-h--hhhcc--ceEEecCCCEEEEECCCCCcHHHHHHHHhhh------------c---CceEEEEecC
Confidence 588999999997 2 46765 9999999999999999999999999999999 5 5666322100
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHH-HHHHH-HHHhccCccceeee------EEEeCCCCCC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKE-LAQML-ERQFNGNAESRAAG------MVINTMGWIE 250 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~-l~~~~-~~~ls~g~~~r~~~------lIlDE~~~lD 250 (441)
.......++. ...+ .+....+ +.+ ...+.. +.+.+ ...||+||+||... ++| +++||
T Consensus 161 ~~~lf~~ti~-~~ni-------~~~~~~~--~~~---~~~i~~~L~~gldg~~LSgGqkQRARAll~~p~iLl--Ts~LD 225 (305)
T 2v9p_A 161 KSHFWLASLA-DTRA-------ALVDDAT--HAC---WRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLV--TSNID 225 (305)
T ss_dssp TSGGGGGGGT-TCSC-------EEEEEEC--HHH---HHHHHHTTTGGGGTCCEECCCSSCCCCEECCCCEEE--EESSC
T ss_pred ccccccccHH-HHhh-------ccCcccc--HHH---HHHHHHHhHccCCccCcCHHHHHHHHHHhCCCCEEE--ECCCC
Confidence 0000000000 0011 1111111 100 111111 11100 34699999998332 555 89999
Q ss_pred chhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChHH
Q 013511 251 GVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKV 309 (441)
Q Consensus 251 ~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~~ 309 (441)
+...+.+.. ++|+ +. ..+.+|++ ++ ++|.++..++..
T Consensus 226 ~~~~~~i~~------------ltH~-----~~-~~~~aD~i-vl---~~G~iv~~g~~~ 262 (305)
T 2v9p_A 226 VQAEDRYLY------------LHSR-----VQ-TFRFEQPC-TD---ESGEQPFNITDA 262 (305)
T ss_dssp STTCGGGGG------------GTTT-----EE-EEECCCCC-CC---C---CCCCCCHH
T ss_pred HHHHHHHHH------------HhCC-----HH-HHHhCCEE-EE---eCCEEEEeCCHH
Confidence 987666542 2676 32 24578999 88 899998877643
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.43 E-value=4.6e-15 Score=150.78 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=52.7
Q ss_pred hccCcccee------------eeEEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 230 FNGNAESRA------------AGMVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 230 ls~g~~~r~------------~~lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
+|+||+||+ .+||+|| +++||+...+.+.++|+++.. .+||++||+ +.. ...||++.++.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~-----~~~-~~~~d~i~~l~ 369 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHL-----AQI-AARAHHHYKVE 369 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC-----HHH-HTTCSEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCc-----HHH-HhhcCeEEEEE
Confidence 688888754 5699999 999999999999999999874 389999999 433 35689988773
Q ss_pred ec-CCCCee
Q 013511 296 LQ-KSGGVV 303 (441)
Q Consensus 296 l~-~~g~vv 303 (441)
-. ++|.++
T Consensus 370 k~~~~G~~~ 378 (415)
T 4aby_A 370 KQVEDGRTV 378 (415)
T ss_dssp EEEETTEEE
T ss_pred EeccCCceE
Confidence 22 355554
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.38 E-value=4.4e-14 Score=154.10 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=57.6
Q ss_pred HHHhccCcccee-------------eeEEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCchhhHHHHHHhcCCCC
Q 013511 227 ERQFNGNAESRA-------------AGMVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQEKLFSMLRDVLKNRPN 290 (441)
Q Consensus 227 ~~~ls~g~~~r~-------------~~lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~~l~~~l~~~~~~~~~ 290 (441)
...||+|++||+ .++|+|| |++||+..++.+.++|+++. ..+||+++|+ +... +.||+
T Consensus 728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHd-----l~~i-~~aDr 801 (842)
T 2vf7_A 728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK-----MQVV-AASDW 801 (842)
T ss_dssp GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC-----HHHH-TTCSE
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHH-HhCCE
Confidence 346899998764 3599999 99999999999999998874 3499999999 7766 67999
Q ss_pred eEEEEe---cCCCCeeeCCh
Q 013511 291 VDVVKL---QKSGGVVSRNS 307 (441)
Q Consensus 291 v~vl~l---~~~g~vv~~~~ 307 (441)
+.++.- .+.|.++..+.
T Consensus 802 ii~L~p~~g~~~G~Iv~~g~ 821 (842)
T 2vf7_A 802 VLDIGPGAGEDGGRLVAQGT 821 (842)
T ss_dssp EEEECSSSGGGCCSEEEEEC
T ss_pred EEEECCCCCCCCCEEEEEcC
Confidence 877710 02567776554
No 66
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.36 E-value=2e-14 Score=158.02 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=59.8
Q ss_pred HHhccCccceee-------------eEEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCchhhHHHHHHhcCCCCe
Q 013511 228 RQFNGNAESRAA-------------GMVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQEKLFSMLRDVLKNRPNV 291 (441)
Q Consensus 228 ~~ls~g~~~r~~-------------~lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~~l~~~l~~~~~~~~~v 291 (441)
..|||||+||+. ++|+|| |++||+...+.++++|+++. ..+||+++|+ ++.+ +.||++
T Consensus 804 ~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~Hd-----L~~i-~~ADrI 877 (916)
T 3pih_A 804 TTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHN-----LDVI-KNADHI 877 (916)
T ss_dssp TTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC-----HHHH-TTCSEE
T ss_pred cCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHH-HhCCEE
Confidence 469999998864 599999 99999999999999999874 3499999999 7655 469998
Q ss_pred EEEEe---cCCCCeeeCChHH
Q 013511 292 DVVKL---QKSGGVVSRNSKV 309 (441)
Q Consensus 292 ~vl~l---~~~g~vv~~~~~~ 309 (441)
.++.- .+.|.++..++..
T Consensus 878 ivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 878 IDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp EEEESSSGGGCCEEEEEESHH
T ss_pred EEecCCCCCCCCEEEEEcCHH
Confidence 77721 1467788777643
No 67
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.35 E-value=2.9e-13 Score=119.33 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
..++++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ + |.+|+|.++|.....
T Consensus 10 ~~~~~~~~g~~--~~l~~--vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~------------l-~~~G~V~~~g~~i~~ 72 (158)
T 1htw_A 10 DEFSMLRFGKK--FAEIL--LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG------------I-GHQGNVKSPTYTLVE 72 (158)
T ss_dssp SHHHHHHHHHH--HHHHH--HHHCCSSCEEEEEECSTTSSHHHHHHHHHHH------------T-TCCSCCCCCTTTCEE
T ss_pred CHHHHHHHHHH--HHHhc--cccccCCCCEEEEECCCCCCHHHHHHHHHHh------------C-CCCCeEEECCEeeee
Confidence 47889999875 45654 8999999999999999999999999999999 8 999999999975532
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHH
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVEL 214 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~ 214 (441)
... . ..+. ++...+| ++|+.+|+.+
T Consensus 73 ~~~--~---~~~~--~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 73 EYN--I---AGKM--IYHFDLY-RLADPEELEF 97 (158)
T ss_dssp EEE--E---TTEE--EEEEECT-TCSCTTHHHH
T ss_pred ecc--C---CCcc--eeccccc-cCCcHHHHHH
Confidence 111 1 1233 3334566 8999998754
No 68
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.34 E-value=5.3e-14 Score=132.27 Aligned_cols=149 Identities=18% Similarity=0.145 Sum_probs=80.7
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHH-HcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEEEec
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAA-KLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~-~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g 204 (441)
+.+|++++|+||||||||||+++|++..+ ..+....+++.+.....+ ... ....++.++.. ..++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~g~~~~~~--~~~~ 92 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDL-----------RRE-MASFGWDFEKY--EKEG 92 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHH-----------HHH-HHTTTCCHHHH--HHTT
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHH-----------HHH-HHHcCCChHHH--hhcC
Confidence 68999999999999999999999996544 555555555543221110 000 00112221110 0111
Q ss_pred ccCccCCHHHH-------------HHHHHHHHHHHHHHhccCccceeeeEEEeC-CCCCC-----chhHHHHHHHHHHcC
Q 013511 205 HATPSNNVELY-------------KVLVKELAQMLERQFNGNAESRAAGMVINT-MGWIE-----GVGYELLLHAIDTFK 265 (441)
Q Consensus 205 ~~tv~en~~~~-------------~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~~lD-----~~~~~~l~~li~~~~ 265 (441)
.+++.++.... .....++.+.....++.. ...++++|| ++.+| +..++.+.++++.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~ 169 (251)
T 2ehv_A 93 KIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAI---NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL 169 (251)
T ss_dssp SEEEEC-------------------CCHHHHHHHHHHHHHHT---TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH
T ss_pred CEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhh---CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 11222211110 001233344444444432 345799999 77775 445566778877764
Q ss_pred C--CEEEEeCCchhhHHHHHH---------hcCC-CCeEEEEe
Q 013511 266 A--NVVLVLGQEKLFSMLRDV---------LKNR-PNVDVVKL 296 (441)
Q Consensus 266 ~--~~Vivi~h~~l~~~l~~~---------~~~~-~~v~vl~l 296 (441)
. .+||+++|+ +... ...| |++.++.-
T Consensus 170 ~~g~tii~vtH~-----~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 170 EMGVTTILTTEA-----PDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHCCEEEEEECC-----C----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HCCCeEEEEECC-----CCCCcccccccChhhEeeeEEEEEee
Confidence 3 388899998 4444 3566 99988854
No 69
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.34 E-value=1.2e-14 Score=133.77 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=24.8
Q ss_pred CCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 124 SDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 124 l~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++.+|++++|+||||||||||+|+|+|+
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35799999999999999999999999998
No 70
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.33 E-value=3.1e-16 Score=160.41 Aligned_cols=159 Identities=14% Similarity=0.033 Sum_probs=105.4
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
++++..++++.|+.. ..++++ + |++.+|++++|+||||||||||+++|+|+ .+|+.|.|.+.|.
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~--v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~------------~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINA--L-LTVGRGQRMGLFAGSGVGKSVLLGMMARY------------TRADVIVVGLIGE 193 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHH--H-SCCBTTCEEEEEECTTSSHHHHHHHHHHH------------SCCSEEEEEEESC
T ss_pred CceEEeccceecCCC-ceEEee--e-EEecCCCEEEEECCCCCCHHHHHHHHhcc------------cCCCeEEEEEece
Confidence 589999999999732 246765 8 99999999999999999999999999999 9999999999886
Q ss_pred ---eeeeeccC-----cCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHH------HHHHHhccCccceeeeEEE
Q 013511 178 ---IAATPIEL-----PIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQ------MLERQFNGNAESRAAGMVI 243 (441)
Q Consensus 178 ---~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~------~~~~~ls~g~~~r~~~lIl 243 (441)
........ .+....++.++.. ...+.++++.+|..+.......... ....++|+|+ ||+++. +
T Consensus 194 r~~ev~~~~~~~~~~~~l~r~i~~v~q~~-~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA-l 270 (438)
T 2dpy_A 194 RGREVKDFIENILGPDGRARSVVIAAPAD-VSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA-I 270 (438)
T ss_dssp CHHHHHHHHHTTTHHHHHHTEEEEEECTT-SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH-T
T ss_pred ecHHHHHHHHhhccccccCceEEEEECCC-CCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH-h
Confidence 22111100 0111112222221 1234555666666554332211000 0023466666 666665 4
Q ss_pred eC---CCCCCchhHHHHHHHHHHcCC-----C------EEEEeCCc
Q 013511 244 NT---MGWIEGVGYELLLHAIDTFKA-----N------VVLVLGQE 275 (441)
Q Consensus 244 DE---~~~lD~~~~~~l~~li~~~~~-----~------~Vivi~h~ 275 (441)
.+ ++++|+..+..+.++++++.. . +|++++|+
T Consensus 271 ~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 271 GEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp TCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred CCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 44 789999999999999999854 3 78888998
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.33 E-value=7e-14 Score=124.81 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=36.2
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHH------------HHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSR------------MLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr------------~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++||++.+|++++|+||||||||||+| .+.|+ +.++.|...+.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~------------~~~~~~~~~~~~ 56 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGL------------MSDDENDQTVTG 56 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHH------------HCSSTTCGGGHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHH------------hcCcccchhhHH
Confidence 378889999999999999999999999 67776 666666665555
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.30 E-value=1.1e-13 Score=151.82 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=57.3
Q ss_pred HHHhccCccceee-------------eEEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCchhhHHHHHHhcCCCC
Q 013511 227 ERQFNGNAESRAA-------------GMVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQEKLFSMLRDVLKNRPN 290 (441)
Q Consensus 227 ~~~ls~g~~~r~~-------------~lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~~l~~~l~~~~~~~~~ 290 (441)
...||+|++||+. ++|+|| |++||+..++.+.++|+++. ..+||+++|+ +... +.||+
T Consensus 861 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHd-----l~~i-~~aDr 934 (993)
T 2ygr_A 861 APTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHN-----LDVI-KTSDW 934 (993)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC-----HHHH-TTCSE
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHH-HhCCE
Confidence 3468999987753 599999 99999999999999998874 3499999999 6654 57999
Q ss_pred eEEEEe---cCCCCeeeCCh
Q 013511 291 VDVVKL---QKSGGVVSRNS 307 (441)
Q Consensus 291 v~vl~l---~~~g~vv~~~~ 307 (441)
+.++.- .+.|.++..+.
T Consensus 935 IivL~p~gg~~~G~Iv~~G~ 954 (993)
T 2ygr_A 935 IIDLGPEGGAGGGTVVAQGT 954 (993)
T ss_dssp EEEEESSSTTSCSEEEEEEC
T ss_pred EEEECCCcCCCCCEEEEecC
Confidence 877721 03566766554
No 73
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.30 E-value=8.7e-14 Score=152.28 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=57.2
Q ss_pred HHHhccCccceee-------------eEEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCchhhHHHHHHhcCCCC
Q 013511 227 ERQFNGNAESRAA-------------GMVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQEKLFSMLRDVLKNRPN 290 (441)
Q Consensus 227 ~~~ls~g~~~r~~-------------~lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~~l~~~l~~~~~~~~~ 290 (441)
...||+|++||+. ++|+|| |++||+..++.+.++|+++. ..+||+++|+ +... ..||+
T Consensus 843 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHd-----l~~i-~~aDr 916 (972)
T 2r6f_A 843 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN-----LDVI-KTADY 916 (972)
T ss_dssp GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC-----HHHH-TTCSE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHH-HhCCE
Confidence 3468999987753 589999 99999999999999998874 3499999999 6654 57999
Q ss_pred eEEEEec----CCCCeeeCCh
Q 013511 291 VDVVKLQ----KSGGVVSRNS 307 (441)
Q Consensus 291 v~vl~l~----~~g~vv~~~~ 307 (441)
+.++. | +.|.++..++
T Consensus 917 IivL~-p~gG~~~G~Iv~~g~ 936 (972)
T 2r6f_A 917 IIDLG-PEGGDRGGQIVAVGT 936 (972)
T ss_dssp EEEEC-SSSTTSCCSEEEEES
T ss_pred EEEEc-CCCCCCCCEEEEecC
Confidence 87761 1 3577776554
No 74
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.27 E-value=2.8e-13 Score=142.01 Aligned_cols=156 Identities=11% Similarity=0.108 Sum_probs=100.1
Q ss_pred hhccCCCCCC-CCCCCCEEEEECCCCCChhHHHHH--HHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCC
Q 013511 115 HAKASPSKDS-DASQGPRVIVVGPTDSGKSTLSRM--LLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVE 191 (441)
Q Consensus 115 ~~l~~~~vsl-~i~~G~~v~IvGpnGsGKSTLlr~--L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~ 191 (441)
.++++ +++ .+.+|++++|+||||||||||+++ ++|+ ..|++|.|++.|........ ......
T Consensus 26 ~~Ld~--i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl------------~~~~~g~i~v~g~~~~~~~~-~~~~~~ 90 (525)
T 1tf7_A 26 EGFDD--ISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI------------IEFDEPGVFVTFEETPQDII-KNARSF 90 (525)
T ss_dssp TTHHH--HTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH------------HHHCCCEEEEESSSCHHHHH-HHHGGG
T ss_pred hhHHH--hcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH------------HhCCCCEEEEEEeCCHHHHH-HHHHHc
Confidence 35554 888 899999999999999999999999 6798 77788988888864211100 011123
Q ss_pred CCCcccce----EEEecccC---ccCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeC-CCC-----CCchhHHHHH
Q 013511 192 GIPLEMPL----VYFFGHAT---PSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINT-MGW-----IEGVGYELLL 258 (441)
Q Consensus 192 ~~~~~~~~----~~~~g~~t---v~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~~-----lD~~~~~~l~ 258 (441)
++.++.+. ..++.... ..+-+ -...+..+.++....||+++.| .++||| ++. +|+..++.+.
T Consensus 91 g~~~q~~~~~~~l~~~~~~~~~~~~~~l--~~~~l~~~~~~~~~~LS~g~~~---~lilDe~t~~~~~~~lD~~~~~~l~ 165 (525)
T 1tf7_A 91 GWDLAKLVDEGKLFILDASPDPEGQEVV--GGFDLSALIERINYAIQKYRAR---RVSIDSVTSVFQQYDASSVVRRELF 165 (525)
T ss_dssp TCCHHHHHHTTSEEEEECCCCSSCCSCC--SSHHHHHHHHHHHHHHHHHTCS---EEEEECSTTTSTTTCCHHHHHHHHH
T ss_pred CCChHHhhccCcEEEEecCcccchhhhh--cccCHHHHHHHHHHHHHHcCCC---EEEECCHHHHHHhcCCHHHHHHHHH
Confidence 44444322 11111000 01100 0112345667788889988775 678999 443 4677788888
Q ss_pred HHHHHcCC--CEEEEeCCchhhHHHHHH---------hcCCCCeEEEE
Q 013511 259 HAIDTFKA--NVVLVLGQEKLFSMLRDV---------LKNRPNVDVVK 295 (441)
Q Consensus 259 ~li~~~~~--~~Vivi~h~~l~~~l~~~---------~~~~~~v~vl~ 295 (441)
++++.++. .+||+++|+ +... ..+||++.+++
T Consensus 166 ~ll~~l~~~g~tvl~itH~-----~~~~~~~~~~~i~~~laD~vi~L~ 208 (525)
T 1tf7_A 166 RLVARLKQIGATTVMTTER-----IEEYGPIARYGVEEFVSDNVVILR 208 (525)
T ss_dssp HHHHHHHHHTCEEEEEEEC-----SSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHHHHHCCCEEEEEecC-----CCCccccccccceeeeeeEEEEEE
Confidence 88888753 388999998 3331 12489998883
No 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.26 E-value=8.3e-14 Score=140.90 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=77.2
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccC
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSN 210 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~e 210 (441)
+++|+||||||||||+|+|+|+ ..|++|+|.++|.... +.++.++.+ .++.+++.|
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl------------~~p~~GsI~~~g~~~t---------~~~~v~q~~---~~~~ltv~D 126 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI------------GNEEEGAAKTGVVEVT---------MERHPYKHP---NIPNVVFWD 126 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC------------CTTSTTSCCCCC-------------CCCEEEECS---SCTTEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC------------CCccCceEEECCeecc---------eeEEecccc---ccCCeeehH
Confidence 9999999999999999999999 9999999999885431 013333322 234555555
Q ss_pred CHHHHHH--HHHHHHHHHH-------HHhccC--ccceee--------------------eEEEeC-CCCCCchhHHHHH
Q 013511 211 NVELYKV--LVKELAQMLE-------RQFNGN--AESRAA--------------------GMVINT-MGWIEGVGYELLL 258 (441)
Q Consensus 211 n~~~~~~--~~~~l~~~~~-------~~ls~g--~~~r~~--------------------~lIlDE-~~~lD~~~~~~l~ 258 (441)
|+.++.. .+.++.+.+. ..+|+| ++||+. ++++|| ++++|+..++.+.
T Consensus 127 ~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~ 206 (413)
T 1tq4_A 127 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVL 206 (413)
T ss_dssp CCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHH
T ss_pred hhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHH
Confidence 5543210 0111111110 015666 655433 268999 9999999988888
Q ss_pred HHHHHcC-----------CCEEEEeCCc
Q 013511 259 HAIDTFK-----------ANVVLVLGQE 275 (441)
Q Consensus 259 ~li~~~~-----------~~~Vivi~h~ 275 (441)
+.++++. ..+|++++|.
T Consensus 207 ~~l~~l~~~~l~~~g~~~~~iiliSsh~ 234 (413)
T 1tq4_A 207 QDIRLNCVNTFRENGIAEPPIFLLSNKN 234 (413)
T ss_dssp HHHHHHHHHHHHHTTCSSCCEEECCTTC
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEecCc
Confidence 8777762 1367777875
No 76
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.21 E-value=3.6e-14 Score=140.83 Aligned_cols=159 Identities=11% Similarity=0.018 Sum_probs=97.7
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
++++..++++.|+.. ..++++ + |++.+|++++|+||||||||||+++|+|+ ..|+.|.+.+.|.
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~--l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~------------~~~~~g~i~~~G~ 107 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDG--L-LTCGIGQRIGIFAGSGVGKSTLLGMICNG------------ASADIIVLALIGE 107 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHH--H-SCEETTCEEEEEECTTSSHHHHHHHHHHH------------SCCSEEEEEEESC
T ss_pred CCeeecccceecCCC-CEEEEe--e-eeecCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCEEEEEEecc
Confidence 478889999988732 246765 8 99999999999999999999999999999 8999998887775
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEec--ccCccCCHHHHHHH--HHHH-HH---------HHHHHhccCccceeeeEEE
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFG--HATPSNNVELYKVL--VKEL-AQ---------MLERQFNGNAESRAAGMVI 243 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~tv~en~~~~~~~--~~~l-~~---------~~~~~ls~g~~~r~~~lIl 243 (441)
..... ...+.....-.+.. ...+.. ..++.+.+...... +.+. .+ ....++|+++ |++++.+-
T Consensus 108 ~~~ev-~~~i~~~~~~~~~~-~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~lal~ 184 (347)
T 2obl_A 108 RGREV-NEFLALLPQSTLSK-CVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLASG 184 (347)
T ss_dssp CHHHH-HHHHTTSCHHHHTT-EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHHTT
T ss_pred cHHHH-HHHHHhhhhhhhhc-eEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHHcC
Confidence 31110 00000000000000 111111 11222221111111 1111 11 1245677787 67776643
Q ss_pred eC--CCCCCchhHHHHHHHHHHcCC----C-----EEEEeCCc
Q 013511 244 NT--MGWIEGVGYELLLHAIDTFKA----N-----VVLVLGQE 275 (441)
Q Consensus 244 DE--~~~lD~~~~~~l~~li~~~~~----~-----~Vivi~h~ 275 (441)
+. +.++|+..+..+.++++++.. . +|++.+|+
T Consensus 185 ~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thd 227 (347)
T 2obl_A 185 EPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDN 227 (347)
T ss_dssp CCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSC
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCC
Confidence 33 579999999999999999852 2 67778898
No 77
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.18 E-value=1.1e-11 Score=131.85 Aligned_cols=158 Identities=12% Similarity=0.018 Sum_probs=83.9
Q ss_pred chhHHHHHHHHhhhhhhhccC------CCC--CCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-CC
Q 013511 99 MVSYVNVNAVLEGRRNHAKAS------PSK--DSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-GQ 169 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~------~~v--sl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-~~ 169 (441)
++.+.|+++.|+......++. .++ ++++ +.++|+||||||||||+++|+|+ ..| ++
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~l---p~iaIvG~nGsGKSTLL~~I~Gl------------~~P~~s 74 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLAL---PAIAVIGDQSSGKSSVLEALSGV------------ALPRGS 74 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCC---CCEECCCCTTSCHHHHHHHHHSC------------C-----
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccC---CeEEEECCCCChHHHHHHHHhCC------------CCCCCC
Confidence 456677777776532111110 112 3333 34999999999999999999998 878 79
Q ss_pred CcccCCceeeeeeccC-cCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCcc-------ceeeeE
Q 013511 170 GAITIPGCIAATPIEL-PIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAE-------SRAAGM 241 (441)
Q Consensus 170 G~i~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~-------~r~~~l 241 (441)
|.|++.|......... .......+.+.++...+++..++.+|+.+....+.. ....++.... ....++
T Consensus 75 G~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~----~~~~~s~~~i~l~i~~~~~p~Ll 150 (608)
T 3szr_A 75 GIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAG----EGMGISHELITLEISSRDVPDLT 150 (608)
T ss_dssp --CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHC----SSSCCCSCCEEEEEEESSSCCEE
T ss_pred CeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcC----CccccchHHHHHHhcCCCCCcee
Confidence 9999999875322111 111222344444445677888999998765433211 0000111100 112359
Q ss_pred EEeCC-------CCCCchhHHHHHHHHHHc-C-C-C-EEEEeCCc
Q 013511 242 VINTM-------GWIEGVGYELLLHAIDTF-K-A-N-VVLVLGQE 275 (441)
Q Consensus 242 IlDE~-------~~lD~~~~~~l~~li~~~-~-~-~-~Vivi~h~ 275 (441)
++||+ +++|+.....+.++++++ + . . ++++++|+
T Consensus 151 LlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~ 195 (608)
T 3szr_A 151 LIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSN 195 (608)
T ss_dssp EEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESS
T ss_pred EeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 99998 678998889999999996 2 2 2 66667776
No 78
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.18 E-value=1.4e-11 Score=119.92 Aligned_cols=165 Identities=12% Similarity=-0.030 Sum_probs=90.2
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeec--c--CcCCCCCCCCcc
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPI--E--LPIDPVEGIPLE 196 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~--~--~~~~~~~~~~~~ 196 (441)
.+++++.+|++++|+||||||||||++.|+|+ +.|.+|+|.+.|.+..... . .....+.++.+.
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~------------l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v 159 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR------------LKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIV 159 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH------------HHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEE
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHH------------HHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEE
Confidence 37888999999999999999999999999999 6666777776665432110 0 000001123333
Q ss_pred cceEE-EecccCccCCHHHHHHH-----------HHHHHHHHHHHhc-------cCccceee--eEEEeCCCCCCchhHH
Q 013511 197 MPLVY-FFGHATPSNNVELYKVL-----------VKELAQMLERQFN-------GNAESRAA--GMVINTMGWIEGVGYE 255 (441)
Q Consensus 197 ~~~~~-~~g~~tv~en~~~~~~~-----------~~~l~~~~~~~ls-------~g~~~r~~--~lIlDE~~~lD~~~~~ 255 (441)
.+... +++..++.+|+.+.... ..+..+....+|| ..-..... ++++|-++++|+..+
T Consensus 160 ~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~- 238 (302)
T 3b9q_A 160 VAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ- 238 (302)
T ss_dssp CCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-
T ss_pred EecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-
Confidence 33334 55666777777654211 0001122333344 00001234 799997778887643
Q ss_pred HHHHHHHHcCCCEEEEeCCchh----hHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 256 LLLHAIDTFKANVVLVLGQEKL----FSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 256 ~l~~li~~~~~~~Vivi~h~~l----~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+.++-++... +++++||.+. -..+.........+.++ ..|..+
T Consensus 239 -~~~~~~~~g~-t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i---~~Ge~~ 285 (302)
T 3b9q_A 239 -AREFNEVVGI-TGLILTKLDGSARGGCVVSVVEELGIPVKFI---GVGEAV 285 (302)
T ss_dssp -HHHHHHHTCC-CEEEEECCSSCSCTHHHHHHHHHHCCCEEEE---ECSSSG
T ss_pred -HHHHHHhcCC-CEEEEeCCCCCCccChheehHHHHCCCEEEE---eCCCCh
Confidence 3333333444 5555667322 12233333445677777 555443
No 79
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.16 E-value=6.3e-13 Score=123.39 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=32.2
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
++||++.+|++++|+||||||||||+|+|+|+ + | |.|.+ |...
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~------------~-p--G~i~~-g~~~ 57 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE------------F-P--NYFYF-SVSC 57 (218)
T ss_dssp -------CCCCEEEECSTTSSHHHHHHHHHHH------------S-T--TTEEE-CCCE
T ss_pred CCceecCCCCEEEEECCCCCCHHHHHHHHHhh------------C-C--CcEEE-eecc
Confidence 49999999999999999999999999999998 6 5 88887 6543
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.15 E-value=7.1e-12 Score=122.55 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=39.3
Q ss_pred chhHHHHHHHHhhhhh-hhcc-----C----------CCCCC-CCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 99 MVSYVNVNAVLEGRRN-HAKA-----S----------PSKDS-DASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~-~~l~-----~----------~~vsl-~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++++.||++.|...-. ..+. . .+++. ++.+|++++|+||||||||||+++|+|+
T Consensus 43 ~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 43 QIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 6889999999964211 0000 0 01222 3789999999999999999999999999
No 81
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.13 E-value=6.6e-11 Score=116.23 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=48.3
Q ss_pred HhccCcccee--------------eeEEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 229 QFNGNAESRA--------------AGMVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 229 ~ls~g~~~r~--------------~~lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
.||+||+|++ .++|+|| +++||+...+.+.++++++... +||+++|+ .. ....||++.
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~-----~~-~~~~~d~~~ 292 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHN-----KI-VMEAADLLH 292 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCC-----TT-GGGGCSEEE
T ss_pred hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC-----HH-HHhhCceEE
Confidence 5778877654 3599999 9999999999999999998543 88999998 22 234678764
Q ss_pred EEEecCCCC
Q 013511 293 VVKLQKSGG 301 (441)
Q Consensus 293 vl~l~~~g~ 301 (441)
.+.+ .+|.
T Consensus 293 ~v~~-~~g~ 300 (322)
T 1e69_A 293 GVTM-VNGV 300 (322)
T ss_dssp EEEE-SSSC
T ss_pred EEEE-eCCE
Confidence 4444 3443
No 82
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.11 E-value=5.5e-11 Score=115.74 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=62.1
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeee
Q 013511 103 VNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATP 182 (441)
Q Consensus 103 ~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~ 182 (441)
.||++.|+++ .++++ ++|++ +|+|+||||||||+++|+|.- +.|.+| +.++|......
T Consensus 2 ~~l~~~~~~~--~~l~~--~~~~I------~lvG~nG~GKSTLl~~L~g~~-----------~~~~~g-i~~~g~~~~~t 59 (301)
T 2qnr_A 2 SNLPNQVHRK--SVKKG--FEFTL------MVVGESGLGKSTLINSLFLTD-----------LYPERV-ISGAAEKIERT 59 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------------
T ss_pred CCCcceECCE--EEEcC--CCEEE------EEECCCCCCHHHHHHHHhCCC-----------ccCCCC-cccCCcccCCc
Confidence 4788888865 45654 77754 999999999999999998851 456666 65555432111
Q ss_pred ccCcCCCCCCCCcccceEEEecccCccCCHHHHH------------HHHHHHHHHHHHHhccCccceee------eEEEe
Q 013511 183 IELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK------------VLVKELAQMLERQFNGNAESRAA------GMVIN 244 (441)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~------------~~~~~l~~~~~~~ls~g~~~r~~------~lIlD 244 (441)
.. . ..+.+..+...++..+++.|++.++. ..+....+.+...+|++++||+. ++++|
T Consensus 60 ~~--~---~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ld 134 (301)
T 2qnr_A 60 VQ--I---EASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFI 134 (301)
T ss_dssp ----------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEE
T ss_pred ce--E---eeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeee
Confidence 00 0 11111111112233445555544321 11233344777889999998876 58899
Q ss_pred C-CC-CCCchhHHHHHHHHHHcCC--C-EEEEeCCc
Q 013511 245 T-MG-WIEGVGYELLLHAIDTFKA--N-VVLVLGQE 275 (441)
Q Consensus 245 E-~~-~lD~~~~~~l~~li~~~~~--~-~Vivi~h~ 275 (441)
| ++ ++|+... ++++.+.. . ++|+..||
T Consensus 135 ePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~D 166 (301)
T 2qnr_A 135 SPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKAD 166 (301)
T ss_dssp CSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGG
T ss_pred cCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCC
Confidence 9 55 4998764 34444433 3 55556777
No 83
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.11 E-value=6.4e-12 Score=124.88 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=38.9
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.+++++.+|++++|+||||||||||++.|+|+ +.|.+|+|.+.|.+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~------------l~~~~G~V~l~g~D 194 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR------------LKNEGTKVLMAAGD 194 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH------------HHHTTCCEEEECCC
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhh------------ccccCCEEEEeccc
Confidence 37888999999999999999999999999999 66666666666543
No 84
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.10 E-value=5.9e-11 Score=118.63 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=55.6
Q ss_pred HhccCccceee----------------eEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCC
Q 013511 229 QFNGNAESRAA----------------GMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRP 289 (441)
Q Consensus 229 ~ls~g~~~r~~----------------~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~ 289 (441)
.||+||+||++ ++|+|| +++||+...+.+.+++++++. .+||+++|+ +.. ...+|
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~-----~~~-~~~~d 352 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHD-----REF-SEAFD 352 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESC-----HHH-HTTCS
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecc-----hHH-HHhCC
Confidence 48999998865 399999 999999999999999999864 399999999 665 46789
Q ss_pred CeEEEEecCCCCee
Q 013511 290 NVDVVKLQKSGGVV 303 (441)
Q Consensus 290 ~v~vl~l~~~g~vv 303 (441)
++.++ +.|.++
T Consensus 353 ~~~~l---~~G~i~ 363 (365)
T 3qf7_A 353 RKLRI---TGGVVV 363 (365)
T ss_dssp CEEEE---ETTEEC
T ss_pred EEEEE---ECCEEE
Confidence 99888 777765
No 85
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.08 E-value=8.1e-12 Score=115.99 Aligned_cols=121 Identities=18% Similarity=0.237 Sum_probs=70.3
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC--CCCcccCCceeeeeeccCcCCCCCCCCcccceEEEe
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI--GQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFF 203 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp--~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (441)
.++|++++|+||||||||||+++|+|. .+| ..|.+.+.+... . + ....++.+.++....|
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~------------~~p~~~~g~v~~ttr~~----~-~-~e~~gi~y~fq~~~~f 74 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT------------QPLYDTQVSVSHTTRQP----R-P-GEVHGEHYFFVNHDEF 74 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH------------SCTTTEEECCCEECSCC----C-T-TCCBTTTBEECCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc------------CCCCceEEEEEecCCCC----C-c-ccccCceEEECCHHHH
Confidence 478999999999999999999999999 765 456665544211 1 1 1112333322222234
Q ss_pred cccCc----cCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeCCCCCCchhHHHHHHHHHHcCCCEEEEeCCc
Q 013511 204 GHATP----SNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTFKANVVLVLGQE 275 (441)
Q Consensus 204 g~~tv----~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE~~~lD~~~~~~l~~li~~~~~~~Vivi~h~ 275 (441)
..+++ .+|..++......-.+.+...+..| .++|+| +|+.+...+.+.+. +..+|++++|+
T Consensus 75 ~~~~~~~~f~E~~~~~~~~yg~~~~~v~~~l~~G-----~illLD----LD~~~~~~i~~~l~--~~~tI~i~th~ 139 (219)
T 1s96_A 75 KEMISRDAFLEHAEVFGNYYGTSREAIEQVLATG-----VDVFLD----IDWQGAQQIRQKMP--HARSIFILPPS 139 (219)
T ss_dssp HHHHHTTCEEEEEEETTEEEEEEHHHHHHHHTTT-----CEEEEE----CCHHHHHHHHHHCT--TCEEEEEECSS
T ss_pred HHHHhcCHHHHHHHHHhccCCCCHHHHHHHHhcC-----CeEEEE----ECHHHHHHHHHHcc--CCEEEEEECCC
Confidence 44444 3333221100000001223334444 479999 99999998888776 33488889998
No 86
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.06 E-value=4.8e-11 Score=110.46 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=26.0
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.+|++++|+||||||||||+++|++.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999999999997
No 87
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.02 E-value=5.3e-10 Score=100.30 Aligned_cols=36 Identities=11% Similarity=0.021 Sum_probs=27.5
Q ss_pred eeeEEEeC---CCCCCchhHHHHHHHHHHcCCCEEEEeCC
Q 013511 238 AAGMVINT---MGWIEGVGYELLLHAIDTFKANVVLVLGQ 274 (441)
Q Consensus 238 ~~~lIlDE---~~~lD~~~~~~l~~li~~~~~~~Vivi~h 274 (441)
..++|+|| ++++|+...+.+.+++++. ..++|+++|
T Consensus 100 p~llilDEigp~~~ld~~~~~~l~~~l~~~-~~~~i~~~H 138 (178)
T 1ye8_A 100 RKVIIIDEIGKMELFSKKFRDLVRQIMHDP-NVNVVATIP 138 (178)
T ss_dssp TCEEEECCCSTTGGGCHHHHHHHHHHHTCT-TSEEEEECC
T ss_pred CCEEEEeCCCCcccCCHHHHHHHHHHHhcC-CCeEEEEEc
Confidence 35899999 5779998899999998873 335666665
No 88
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.01 E-value=2.4e-10 Score=105.69 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=39.2
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG 168 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~ 168 (441)
+.+|++++|+||||||||||++.|++.+...+.+++|++.+..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 6889999999999999999999999998888889999887654
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.98 E-value=3.8e-10 Score=106.25 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=25.7
Q ss_pred hhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 115 HAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 115 ~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++++ +||++.+|++++|+||||||||||+|+|+++
T Consensus 13 ~~l~~--isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 13 LGTEN--LYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeecc--eeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46655 9999999999999999999999999999997
No 90
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.96 E-value=5.8e-11 Score=117.04 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=41.5
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+++.+.+|+.++|+||||||||||+++|+|+ ++|++|.|++.|.
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~------------~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF------------IPKEERIISIEDT 207 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGG------------SCTTSCEEEEESS
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCC------------CcCCCcEEEECCe
Confidence 7788899999999999999999999999999 9999999999885
No 91
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.95 E-value=7.2e-10 Score=122.13 Aligned_cols=131 Identities=13% Similarity=0.154 Sum_probs=72.5
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceE
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 200 (441)
+++|++.+|++++|+||||||||||+|++++..+- ...|. .+|..... +... .
T Consensus 665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-----------aq~g~-~vpa~~~~------------i~~~---d 717 (918)
T 3thx_B 665 NTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-----------AQIGS-YVPAEEAT------------IGIV---D 717 (918)
T ss_dssp EEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-----------HHHTC-CBSSSEEE------------EECC---S
T ss_pred cccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-----------hhcCc-cccchhhh------------hhHH---H
Confidence 48999999999999999999999999999876321 11121 12221100 0000 0
Q ss_pred EEecccCccCCHHHHH----HHHHHHHHHHHHHhccCccceeeeEEEeC-CCCCCchhHHHHH-HHHHHcC---CCEEEE
Q 013511 201 YFFGHATPSNNVELYK----VLVKELAQMLERQFNGNAESRAAGMVINT-MGWIEGVGYELLL-HAIDTFK---ANVVLV 271 (441)
Q Consensus 201 ~~~g~~tv~en~~~~~----~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~~lD~~~~~~l~-~li~~~~---~~~Viv 271 (441)
.+|..+...+++.... ..+.++...... ....+++|+|| ++++|+.....+. .+++.+. ..++++
T Consensus 718 ~i~~~ig~~d~l~~~~stfs~em~~~~~il~~------a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~ 791 (918)
T 3thx_B 718 GIFTRMGAADNIYKGRSTFMEELTDTAEIIRK------ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLF 791 (918)
T ss_dssp EEEEEC----------CCHHHHHHHHHHHHHH------CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh------ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 1333444445443321 112222211111 12346899999 9999997665554 6676652 348999
Q ss_pred eCCchhhHHHHHH
Q 013511 272 LGQEKLFSMLRDV 284 (441)
Q Consensus 272 i~h~~l~~~l~~~ 284 (441)
+||+.....+.+.
T Consensus 792 vTH~~el~~l~~~ 804 (918)
T 3thx_B 792 VTHYPPVCELEKN 804 (918)
T ss_dssp ECSCGGGGGHHHH
T ss_pred EeCcHHHHHHHhh
Confidence 9999655555544
No 92
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.94 E-value=1.1e-10 Score=105.88 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=32.8
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
|++++|+||||||||||+++|+|+ +. ++| +.++|...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~------------~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV------------LK-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH------------HH-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhh------------cc-cCC-EEEcCEec
Confidence 689999999999999999999999 77 778 88887644
No 93
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.91 E-value=1.3e-09 Score=103.76 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=36.5
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC-CCcccCCce
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG-QGAITIPGC 177 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~-~G~i~~~G~ 177 (441)
+.+|++++|+||||||||||+++|+|+ ++|. +|+|.+.|.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~------------~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY------------INQTKSYHIITIED 62 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH------------HHHHCCCEEEEEES
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh------------CCCCCCCEEEEcCC
Confidence 689999999999999999999999999 8887 888877774
No 94
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.90 E-value=1.1e-09 Score=122.41 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=83.8
Q ss_pred CCCchhHHH-----HHHHHhhhhhhhccCCCCCCCCCC-------CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEE
Q 013511 96 ETPMVSYVN-----VNAVLEGRRNHAKASPSKDSDASQ-------GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFV 163 (441)
Q Consensus 96 ~~~ml~~~n-----l~~~~~~~~~~~l~~~~vsl~i~~-------G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~v 163 (441)
+.+++++.| +.+.|.+. ..++++ ++|.+.+ |++++|+||||||||||+|++ |+..-..
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~-~~v~nd--i~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~a------ 816 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGD-DFIPND--ILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMA------ 816 (1022)
T ss_dssp SCCCEEEEEECCCC------CC-CCCCEE--EEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHH------
T ss_pred CCceEEEEeccccEEEEEecCC-ceEeee--eeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHh------
Confidence 345788888 88888332 245544 8898877 899999999999999999999 8743110
Q ss_pred eccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHH----HHHHHHHHHHHHHHHhccCccceee
Q 013511 164 DLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVEL----YKVLVKELAQMLERQFNGNAESRAA 239 (441)
Q Consensus 164 Dldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~----~~~~~~~l~~~~~~~ls~g~~~r~~ 239 (441)
.-|.+ +|-... .+.... .+|..+...+++.. +...+.+++ ....+.. ..+
T Consensus 817 ----qiG~~-Vpq~~~------~l~v~d---------~I~~rig~~d~~~~~~stf~~em~~~a--~al~la~----~~s 870 (1022)
T 2o8b_B 817 ----QMGCY-VPAEVC------RLTPID---------RVFTRLGASDRIMSGESTFFVELSETA--SILMHAT----AHS 870 (1022)
T ss_dssp ----TTTCC-EESSEE------EECCCS---------BEEEECC---------CHHHHHHHHHH--HHHHHCC----TTC
T ss_pred ----heeEE-eccCcC------CCCHHH---------HHHHHcCCHHHHhhchhhhHHHHHHHH--HHHHhCC----CCc
Confidence 11110 111000 000000 01111222222211 111122211 1112222 246
Q ss_pred eEEEeC-CCCCCchh-HHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 240 GMVINT-MGWIEGVG-YELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 240 ~lIlDE-~~~lD~~~-~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
++|+|| +.++|+.. ...+.++++.+. ..++|++||+ ++.....++++.++
T Consensus 871 LlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~-----~el~~~~~d~~~v~ 925 (1022)
T 2o8b_B 871 LVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHY-----HSLVEDYSQNVAVR 925 (1022)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC-----HHHHHHTSSCSSEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC-----HHHHHHhCCcceee
Confidence 899999 89999865 455677777763 3388999999 55555567777665
No 95
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.88 E-value=5.3e-09 Score=93.33 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=28.2
Q ss_pred CCCCCCCCEEEEECCCCCChhHHHHHHHHHHH
Q 013511 123 DSDASQGPRVIVVGPTDSGKSTLSRMLLSWAA 154 (441)
Q Consensus 123 sl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~ 154 (441)
++.+.+|+.++|+||||+|||||+++|++.+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999999999943
No 96
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.86 E-value=7.5e-09 Score=112.92 Aligned_cols=133 Identities=13% Similarity=0.072 Sum_probs=71.1
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceE
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 200 (441)
+++|+ .+|++++|+||||||||||+|+|+|..+. ...|.. +|... ..+.+..
T Consensus 600 disl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~-----------~q~G~~-vpa~~------------~~i~~~~--- 651 (800)
T 1wb9_A 600 PLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM-----------AYIGSY-VPAQK------------VEIGPID--- 651 (800)
T ss_dssp EEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH-----------HTTTCC-BSSSE------------EEECCCC---
T ss_pred ccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH-----------HhcCcc-cchhc------------ccceeHH---
Confidence 37787 88999999999999999999999998421 112221 12110 0011111
Q ss_pred EEecccCccCCHHHHHHH-HHHHHHHHHHHhccCccceeeeEEEeC-CCCCCchhHHH-HHHHHHHcC---CCEEEEeCC
Q 013511 201 YFFGHATPSNNVELYKVL-VKELAQMLERQFNGNAESRAAGMVINT-MGWIEGVGYEL-LLHAIDTFK---ANVVLVLGQ 274 (441)
Q Consensus 201 ~~~g~~tv~en~~~~~~~-~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~~lD~~~~~~-l~~li~~~~---~~~Vivi~h 274 (441)
.+|..+++.+|+...... ..++. ....-+. .....+++|+|| ++++|+..... ..++++.+. ..+++++||
T Consensus 652 ~i~~~~~~~d~l~~~~stf~~e~~-~~~~il~--~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH 728 (800)
T 1wb9_A 652 RIFTRVGAADDLASGRSTFMVEMT-ETANILH--NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATH 728 (800)
T ss_dssp EEEEEEC-----------CHHHHH-HHHHHHH--HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHhhCCHHHHHHhhhhhhhHHHH-HHHHHHH--hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeC
Confidence 245666777776553221 11111 1111111 012347899999 88899865443 356666653 348899999
Q ss_pred chhhHHHHHH
Q 013511 275 EKLFSMLRDV 284 (441)
Q Consensus 275 ~~l~~~l~~~ 284 (441)
+.....+.+.
T Consensus 729 ~~el~~l~d~ 738 (800)
T 1wb9_A 729 YFELTQLPEK 738 (800)
T ss_dssp CGGGGGHHHH
T ss_pred CHHHHHHhhh
Confidence 9544444443
No 97
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.85 E-value=1e-09 Score=121.26 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=68.5
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceE
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 200 (441)
+++|.+.+|++++|+||||||||||+|+++...+- +..|.+ +|.... . . ....
T Consensus 654 disl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~-----------aq~G~~-vpa~~~-~-~----------~~~d--- 706 (934)
T 3thx_A 654 DVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM-----------AQIGCF-VPCESA-E-V----------SIVD--- 706 (934)
T ss_dssp EEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH-----------HHHTCC-BSEEEE-E-E----------ECCS---
T ss_pred cceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH-----------HhcCCc-cccccc-c-c----------hHHH---
Confidence 47888899999999999999999999999654321 111211 122110 0 0 0000
Q ss_pred EEecccCccCCHHH----HHHHHHHHHHHHHHHhccCccceeeeEEEeC-CCCCCchhHHHH-HHHHHHcC---CCEEEE
Q 013511 201 YFFGHATPSNNVEL----YKVLVKELAQMLERQFNGNAESRAAGMVINT-MGWIEGVGYELL-LHAIDTFK---ANVVLV 271 (441)
Q Consensus 201 ~~~g~~tv~en~~~----~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~~lD~~~~~~l-~~li~~~~---~~~Viv 271 (441)
.+|..+...+++.. +...+.+++..+.. . ...+++|+|| ++++|+.....+ ..+++.+. ..++++
T Consensus 707 ~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~--a----~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~ 780 (934)
T 3thx_A 707 CILARVGAGDSQLKGVSTFMAEMLETASILRS--A----TKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF 780 (934)
T ss_dssp EEEEECC---------CHHHHHHHHHHHHHHH--C----CTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHhcCchhhHHHhHhhhHHHHHHHHHHHHh--c----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 12222222333322 22222222222211 1 1236899999 899999765444 56666553 348888
Q ss_pred eCCchhhHHH
Q 013511 272 LGQEKLFSML 281 (441)
Q Consensus 272 i~h~~l~~~l 281 (441)
+||+.....+
T Consensus 781 aTH~~el~~l 790 (934)
T 3thx_A 781 ATHFHELTAL 790 (934)
T ss_dssp EESCGGGGGG
T ss_pred EcCcHHHHHH
Confidence 9998444333
No 98
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.84 E-value=2.8e-09 Score=115.70 Aligned_cols=120 Identities=17% Similarity=0.209 Sum_probs=68.0
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEE
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVY 201 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (441)
++|+ |++++|+||||||||||+|+|+|+.. .+..|.+. |... ..+++..+
T Consensus 572 isl~---g~i~~I~GpNGsGKSTlLr~iagl~~-----------~~~~G~~v-pa~~------------~~i~~v~~--- 621 (765)
T 1ewq_A 572 LEMA---HELVLITGPNMAGKSTFLRQTALIAL-----------LAQVGSFV-PAEE------------AHLPLFDG--- 621 (765)
T ss_dssp EEES---SCEEEEESCSSSSHHHHHHHHHHHHH-----------HHTTTCCB-SSSE------------EEECCCSE---
T ss_pred ccCC---CcEEEEECCCCCChHHHHHHHHhhhh-----------hcccCcee-ehhc------------cceeeHHH---
Confidence 5555 99999999999999999999999831 24455543 2110 01122222
Q ss_pred EecccCccCCHHHHHHH-HHHHHHHHHHHhccCccceeeeEEEeCC----CCCCchhH-HHHHHHHHHcCCCEEEEeCCc
Q 013511 202 FFGHATPSNNVELYKVL-VKELAQMLERQFNGNAESRAAGMVINTM----GWIEGVGY-ELLLHAIDTFKANVVLVLGQE 275 (441)
Q Consensus 202 ~~g~~tv~en~~~~~~~-~~~l~~~~~~~ls~g~~~r~~~lIlDE~----~~lD~~~~-~~l~~li~~~~~~~Vivi~h~ 275 (441)
+|..+++.+|+...... ..++. .....+. .....+++|+||+ +.+|+... ..+.+.+.+ ...++|++||+
T Consensus 622 i~~~~~~~d~l~~g~S~~~~e~~-~la~il~--~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~ 697 (765)
T 1ewq_A 622 IYTRIGASDDLAGGKSTFMVEME-EVALILK--EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHY 697 (765)
T ss_dssp EEEECCC------CCSHHHHHHH-HHHHHHH--HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCC
T ss_pred hhccCCHHHHHHhcccHHHHHHH-HHHHHHH--hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 56677888887653211 11111 1111120 0123478999993 55787664 456777766 34588899999
No 99
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.84 E-value=2.5e-10 Score=113.38 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=28.4
Q ss_pred CCCCCCCCEEEEECCCCCChhHHHHHHHHHH
Q 013511 123 DSDASQGPRVIVVGPTDSGKSTLSRMLLSWA 153 (441)
Q Consensus 123 sl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a 153 (441)
...+.+|++++|+||||||||||++.|++.+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999999999984
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.83 E-value=6.6e-09 Score=90.32 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAA 154 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~ 154 (441)
+|+.++|+||+|||||||+++|++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999943
No 101
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.82 E-value=4.6e-11 Score=119.39 Aligned_cols=42 Identities=24% Similarity=0.280 Sum_probs=38.9
Q ss_pred CCCCCCC--CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC----CcccCC
Q 013511 122 KDSDASQ--GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ----GAITIP 175 (441)
Q Consensus 122 vsl~i~~--G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~----G~i~~~ 175 (441)
+++.+.+ |++++|+||||||||||+|+|+|+ ++|.. |++.++
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl------------~~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAV------------FNTTSAWEYGREFVF 208 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH------------TTCEEECCTTHHHHH
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH------------hCCCcchhhHHHHHH
Confidence 8889999 999999999999999999999999 88888 887764
No 102
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.81 E-value=5.8e-10 Score=114.42 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=38.4
Q ss_pred CCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 120 PSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 120 ~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+++|++.+|++++|+|+||||||||+++|+|+ +.+.+|+|.+.|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl------------l~~~~G~V~l~g 328 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ------------FEQQGKSVMLAA 328 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH------------HHHTTCCEEEEC
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHH------------hhhcCCeEEEec
Confidence 358999999999999999999999999999999 556666666544
No 103
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.79 E-value=2.9e-09 Score=102.93 Aligned_cols=46 Identities=26% Similarity=0.208 Sum_probs=39.4
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHc-CCccEEEeccC
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKL-GWKPTFVDLDI 167 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~-g~~~~~vDldp 167 (441)
+++.+.+|++++|+||||||||||++.|++..... |.+++|++.+.
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 55678999999999999999999999999997765 66787877654
No 104
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.77 E-value=4.3e-09 Score=102.36 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=34.6
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
+|++++|+||||||||||+++|+++ +.|.+|+|.+.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl------------l~~~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY------------YQNLGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH------------HHTTTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH------------HHhcCCEEEEEeec
Confidence 6899999999999999999999999 77777777777754
No 105
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.76 E-value=1e-09 Score=111.17 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=33.3
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++.+.|+++.|++. .++++ ++|++ +|+|+||||||||+++|+|.
T Consensus 10 ~~l~~~~l~~~y~~~--~vl~~--vsf~I------~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 10 GYVGFANLPNQVYRK--SVKRG--FEFTL------MVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp -----CCCCCCTTTT--TCC-C--CCEEE------EEECCTTSSHHHHHHHHTTC
T ss_pred CcEEEEecceeECCE--EEecC--CCEEE------EEECCCCCcHHHHHHHHhCC
Confidence 467888899889764 45654 78754 99999999999999999997
No 106
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.74 E-value=7.7e-09 Score=101.59 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=32.9
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
..+|++++|+|||||||||+++.|+|+ +.|.+|+|.+.|.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~------------l~~~~g~V~l~g~ 165 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANW------------LKNHGFSVVIAAS 165 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHH------------HHHTTCCEEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH------------HHhcCCEEEEEee
Confidence 478999999999999999999999999 5555555555554
No 107
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.69 E-value=5.8e-09 Score=97.16 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=26.1
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWA 153 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a 153 (441)
+.+|++++|+||||||||||++.|++.+
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 5889999999999999999999999963
No 108
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.66 E-value=9.2e-09 Score=101.55 Aligned_cols=66 Identities=20% Similarity=0.136 Sum_probs=51.6
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI 167 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp 167 (441)
++++..++++.|+.. .++++ +++++.+|++++|+|+||||||||+++|+|+....+.++.++..||
T Consensus 28 ~~ie~~~~~~~~~~~--~~l~~--i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 28 TLAESRRADHRAAVR--DLIDA--VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 93 (337)
T ss_dssp HHHTCSSHHHHHHHH--HHHHH--HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred HHHeeCCcccccChH--HHHHh--CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence 468888999999765 35554 8899999999999999999999999999999443444444444444
No 109
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.66 E-value=5e-09 Score=106.20 Aligned_cols=62 Identities=19% Similarity=0.112 Sum_probs=47.1
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
..+++.++.+.|+... ++++ + + ..+|++++|+||||||||||+++|+|+ ++|.+|+|.+.|.
T Consensus 142 ~~~~l~~Lg~~~~~~~--~L~~--l-~-~~~ggii~I~GpnGSGKTTlL~allg~------------l~~~~g~I~~~ed 203 (418)
T 1p9r_A 142 TRLDLHSLGMTAHNHD--NFRR--L-I-KRPHGIILVTGPTGSGKSTTLYAGLQE------------LNSSERNILTVED 203 (418)
T ss_dssp TCCCGGGSCCCHHHHH--HHHH--H-H-TSSSEEEEEECSTTSCHHHHHHHHHHH------------HCCTTSCEEEEES
T ss_pred CCCCHHHcCCCHHHHH--HHHH--H-H-HhcCCeEEEECCCCCCHHHHHHHHHhh------------cCCCCCEEEEecc
Confidence 3567888877776542 3332 3 3 378899999999999999999999999 7777777766553
No 110
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.66 E-value=2.4e-09 Score=104.92 Aligned_cols=139 Identities=12% Similarity=0.101 Sum_probs=82.2
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCc-----------CCC--CCCCCcc
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELP-----------IDP--VEGIPLE 196 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~-----------~~~--~~~~~~~ 196 (441)
++++|+|+||||||||+|.|+++ ..|+++++ +.++.|+|.++|.......... ... ...+...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~--~~~~~~aV--i~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE--QHGYKIAV--IENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS--CCCCCEEE--ECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhh--cCCCcEEE--EEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 68999999999999999999997 35666666 4678899999987653210000 000 0011111
Q ss_pred ---cceEEEecccCccCCHHHH--H----HH-----H---------------HHHHHHHHHHhccCccceee--eEEEeC
Q 013511 197 ---MPLVYFFGHATPSNNVELY--K----VL-----V---------------KELAQMLERQFNGNAESRAA--GMVINT 245 (441)
Q Consensus 197 ---~~~~~~~g~~tv~en~~~~--~----~~-----~---------------~~l~~~~~~~ls~g~~~r~~--~lIlDE 245 (441)
.+...++.+.++.||..+. . .. . ..+.+.. ..+|+|++|+.. .+|++.
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-~~ls~g~~Q~~~ad~ill~k 159 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-NQFTIAQSQVGYADRILLTK 159 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-HHCHHHHHHHHTCSEEEEEC
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-hhchHHHHHHHhCCEEEEEC
Confidence 1111123344555544321 0 00 0 0111222 256788887754 477788
Q ss_pred CCCCCchhHHHHHHHHHHcCCC-EEEEeCCc
Q 013511 246 MGWIEGVGYELLLHAIDTFKAN-VVLVLGQE 275 (441)
Q Consensus 246 ~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~ 275 (441)
+.-+|.. +.+.+.++++++. +|++++|.
T Consensus 160 ~dl~de~--~~l~~~l~~l~~~~~ii~~sh~ 188 (318)
T 1nij_A 160 TDVAGEA--EKLHERLARINARAPVYTVTHG 188 (318)
T ss_dssp TTTCSCT--HHHHHHHHHHCSSSCEEECCSS
T ss_pred cccCCHH--HHHHHHHHHhCCCCeEEEeccc
Confidence 6666654 6777888887765 78888886
No 111
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.65 E-value=4.4e-10 Score=112.13 Aligned_cols=44 Identities=30% Similarity=0.362 Sum_probs=41.4
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+++.+.+|+.++|+||||||||||+++|+++ ++|.+|.|++.|.
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~------------~~~~~g~I~ie~~ 211 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQE------------IPFDQRLITIEDV 211 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHTT------------SCTTSCEEEEESS
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhc------------CCCCceEEEECCc
Confidence 7888899999999999999999999999999 9999999998874
No 112
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.64 E-value=9.1e-08 Score=94.36 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=65.1
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHH-HHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEEEecc
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLS-WAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGH 205 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g-~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 205 (441)
.+++.++|.||+|+||||++++|++ + ..|+.|.+.++|......... ....+...+.....+...
T Consensus 34 ~~~~~~ll~Gp~G~GKTtl~~~la~~l------------~~~~~g~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 99 (354)
T 1sxj_E 34 RDLPHLLLYGPNGTGKKTRCMALLESI------------FGPGVYRLKIDVRQFVTASNR--KLELNVVSSPYHLEITPS 99 (354)
T ss_dssp TCCCCEEEECSTTSSHHHHHHTHHHHH------------SCTTCCC--------------------CCEECSSEEEECCC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH------------cCCCCCeEEecceeecccccc--cceeeeecccceEEecHh
Confidence 3444599999999999999999999 6 788899998888543211111 011111112221111111
Q ss_pred cCccCCHHHHHHHHHHHHHHHHHH--------hccCccceeeeEEEeCCCCCCchhHHHHHHHHHHcCCC-EEEEeCCc
Q 013511 206 ATPSNNVELYKVLVKELAQMLERQ--------FNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTFKAN-VVLVLGQE 275 (441)
Q Consensus 206 ~tv~en~~~~~~~~~~l~~~~~~~--------ls~g~~~r~~~lIlDE~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~ 275 (441)
......- ..+.++.+..... +|+ ...+..++|+||+..+|....+.+.+.+++...+ ++|+++|+
T Consensus 100 ~~~~~~~----~~~~~~i~~~~~~~~~~~~~~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 100 DMGNNDR----IVIQELLKEVAQMEQVDFQDSKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp ----CCH----HHHHHHHHHHTTTTC-------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred hcCCcch----HHHHHHHHHHHHhccccccccccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 0000000 0111111111110 121 1223458999995559999999999999998665 67777776
No 113
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.64 E-value=1.5e-09 Score=112.80 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=87.1
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeee---------ccCcCCCCCC
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATP---------IELPIDPVEG 192 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~---------~~~~~~~~~~ 192 (441)
+++.+.+|+.++|+||||||||||+++|+|+ ++|++|.|++.|..-... ..... ...+
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~------------i~~~~giitied~~E~~~~~~~~v~~~~r~~~-~~~~ 319 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMF------------IPPDAKVVSIEDTREIKLYHENWIAEVTRTGM-GEGE 319 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHHHGGG------------SCTTCCEEEEESSCCCCCCCSSEEEEECBCCS-SSCC
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhh------------CCCCCCEEEEcCcccccCCCCCeEEEEeeccc-ccCC
Confidence 5666788999999999999999999999999 889899888776531110 00000 0011
Q ss_pred ---------CCcccceEEEecccCccCCHHHHHHHH--------------HHHHHHHHH---------------------
Q 013511 193 ---------IPLEMPLVYFFGHATPSNNVELYKVLV--------------KELAQMLER--------------------- 228 (441)
Q Consensus 193 ---------~~~~~~~~~~~g~~tv~en~~~~~~~~--------------~~l~~~~~~--------------------- 228 (441)
...+.|...+++.++..++..++.... .+...++..
T Consensus 320 ~~~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~ 399 (511)
T 2oap_1 320 IDMYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTM 399 (511)
T ss_dssp BCHHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEE
T ss_pred cCHHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEE
Confidence 122566777889888887655543321 111111111
Q ss_pred HhccCccceeeeEEEeCCCCCCchhHHHHHHHHHHcCC--CEEEE--eCCc
Q 013511 229 QFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTFKA--NVVLV--LGQE 275 (441)
Q Consensus 229 ~ls~g~~~r~~~lIlDE~~~lD~~~~~~l~~li~~~~~--~~Viv--i~h~ 275 (441)
.+|+|+++|...-++ |+.++|+.+...+.+.+.+++. +++++ ++|.
T Consensus 400 ~~s~G~~~R~~~ai~-E~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~ 449 (511)
T 2oap_1 400 WVRGNTRLRRTKEVN-EILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKK 449 (511)
T ss_dssp EESSSCEEEEEEEEE-EEEECCSSSSCCEEEEEEEEETTTTEEEECSCCTH
T ss_pred EEeCCCceEEEEEEE-EEcCcccCCCeEEEEEeEEEcccCCEEEEcccHHH
Confidence 135666666665544 5778888766555556666643 36664 6887
No 114
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.62 E-value=7.7e-09 Score=100.78 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=50.4
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCC-------------------CCCCEEEEECCCCCChhHHHHHHHHHHHHcCC
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDA-------------------SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGW 158 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i-------------------~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~ 158 (441)
.++++.|+++.|.. ++++ +++.+ .+|++++|+||||||||||+++|+++
T Consensus 36 ~~i~~~~v~~~y~~----~~~~--i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~------ 103 (308)
T 1sq5_A 36 EDLSLEEVAEIYLP----LSRL--LNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQAL------ 103 (308)
T ss_dssp TTCCHHHHHHTHHH----HHHH--HHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHH------
T ss_pred cccchHhHHHHHHH----HHHH--HHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH------
Confidence 46889999999953 2222 45444 88999999999999999999999999
Q ss_pred ccEEEecc--CCCCcccC---Cce
Q 013511 159 KPTFVDLD--IGQGAITI---PGC 177 (441)
Q Consensus 159 ~~~~vDld--p~~G~i~~---~G~ 177 (441)
+. |++|+|.+ +|.
T Consensus 104 ------l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 104 ------LSRWPEHRRVELITTDGF 121 (308)
T ss_dssp ------HTTSTTCCCEEEEEGGGG
T ss_pred ------HhhCCCCCeEEEEecCCc
Confidence 77 88888887 764
No 115
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.61 E-value=2.2e-08 Score=99.41 Aligned_cols=55 Identities=5% Similarity=0.029 Sum_probs=45.2
Q ss_pred eEEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 240 GMVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 240 ~lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
++|+|| ++.||+..++.+.+++.++. .++|+++|... .++++.++ +.|.++..++
T Consensus 295 iLLLDEp~s~LD~~~~~~l~~~l~~~~-qt~i~~th~~~---------~~~~i~~l---~~G~i~~~g~ 350 (359)
T 2o5v_A 295 VLLLDDFTAELDPHRRQYLLDLAASVP-QAIVTGTELAP---------GAALTLRA---QAGRFTPVAD 350 (359)
T ss_dssp EEEECCGGGCCCHHHHHHHHHHHHHSS-EEEEEESSCCT---------TCSEEEEE---ETTEEEECCC
T ss_pred EEEEeCccccCCHHHHHHHHHHHHhcC-cEEEEEEeccc---------cCCEEEEE---ECCEEEecCC
Confidence 399999 99999999999999999987 68888888521 57888888 7888876554
No 116
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.61 E-value=1.3e-09 Score=113.96 Aligned_cols=149 Identities=10% Similarity=0.100 Sum_probs=79.9
Q ss_pred CCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCc----ccce
Q 013511 124 SDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPL----EMPL 199 (441)
Q Consensus 124 l~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~----~~~~ 199 (441)
..+.+|++++|+|+||||||||++++++.....|.+++|+...-...++. .... ..++.. ....
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~----------~~~~--~~g~~~~~~~~~g~ 343 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLL----------RNAY--SWGMDFEEMERQNL 343 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHH----------HHHH--TTSCCHHHHHHTTS
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHH----------HHHH--HcCCCHHHHHhCCC
Confidence 35799999999999999999999999999766666665554332111110 0000 001100 0000
Q ss_pred EEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeCCCCCCch-----hHHHHHHHHHHcCC--CEEEEe
Q 013511 200 VYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGV-----GYELLLHAIDTFKA--NVVLVL 272 (441)
Q Consensus 200 ~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE~~~lD~~-----~~~~l~~li~~~~~--~~Vivi 272 (441)
..+ -...+.+ +.... ..+. .....+. .+..++|+|-++++|.. .++.+.++++.++. .+||++
T Consensus 344 ~~~-~~~~p~~-LS~g~--~q~~--~~a~~l~----~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilv 413 (525)
T 1tf7_A 344 LKI-VCAYPES-AGLED--HLQI--IKSEIND----FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFT 413 (525)
T ss_dssp EEE-CCCCGGG-SCHHH--HHHH--HHHHHHT----TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEE-EEecccc-CCHHH--HHHH--HHHHHHh----hCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 011 1111110 00000 0000 0111111 23457999976889987 78888888877753 388888
Q ss_pred CCch-hhHHH----HHHhcCCCCeEEE
Q 013511 273 GQEK-LFSML----RDVLKNRPNVDVV 294 (441)
Q Consensus 273 ~h~~-l~~~l----~~~~~~~~~v~vl 294 (441)
+|+. ....+ ......||++.++
T Consensus 414 sh~~~~~~~~~~~~~~l~~~~D~vi~L 440 (525)
T 1tf7_A 414 NTSDQFMGAHSITDSHISTITDTIILL 440 (525)
T ss_dssp EECSSSSCCCSSCSSCCTTTCSEEEEE
T ss_pred ECcccccCcccccCcccceeeeEEEEE
Confidence 8982 00000 2334578998887
No 117
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.60 E-value=1.6e-08 Score=103.94 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=44.4
Q ss_pred hccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 116 AKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 116 ~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
++++ ++|++.+ ++++|+||||||||||+++|+|+ +.|++|+|.++|...
T Consensus 19 ~l~~--vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl------------~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 19 GFFA--RTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA------------LIPDLTLLNFRNTTE 67 (483)
T ss_dssp TEEE--EEEECCS-SEEEEECCTTSSHHHHHHHHHHH------------HCCCTTTCCCCCTTS
T ss_pred cccc--eEEEEcc-ceEEEECCCCCcHHHHHHHHhcC------------CCCCCCEEEECCEEc
Confidence 4444 8899999 99999999999999999999999 999999999999754
No 118
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.59 E-value=1.4e-07 Score=91.42 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=38.8
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHH-cCCccEEEeccCC
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAK-LGWKPTFVDLDIG 168 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~-~g~~~~~vDldp~ 168 (441)
.+|++++++|+|||||||+++.|++++.. .|+++.++|.|+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 47899999999999999999999999875 8999999999985
No 119
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.56 E-value=2.7e-09 Score=107.98 Aligned_cols=42 Identities=29% Similarity=0.322 Sum_probs=32.4
Q ss_pred HHHHhhhhhhhccCCCCCCCCCCCCE--EEEECCCCCChhHHHHHHHHH
Q 013511 106 NAVLEGRRNHAKASPSKDSDASQGPR--VIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 106 ~~~~~~~~~~~l~~~~vsl~i~~G~~--v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++.|++.. +++ +++++.+|++ ++|+||||||||||+++|+|+
T Consensus 22 ~~~y~~~~---L~~--vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 22 HVGFDSLP---DQL--VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CC--C---HHH--HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCee---cCC--CceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 55565432 433 7888999999 999999999999999999997
No 120
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.55 E-value=1.2e-07 Score=94.92 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=33.6
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC-CCcccCCc
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG-QGAITIPG 176 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~-~G~i~~~G 176 (441)
+.+|++++|+||||||||||+++|+++ ++|. +|.|...|
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~------------~~~~~~g~I~~~e 172 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDY------------INQTKSYHIITIE 172 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHH------------HHHHSCCEEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhh------------cCcCCCcEEEEec
Confidence 688999999999999999999999999 7775 67775444
No 121
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.55 E-value=2.1e-08 Score=90.97 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=25.4
Q ss_pred CCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 123 DSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 123 sl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
|++..+|++++|+||||||||||+++|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 345678999999999999999999999998
No 122
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.55 E-value=1.2e-07 Score=93.48 Aligned_cols=63 Identities=8% Similarity=0.223 Sum_probs=49.0
Q ss_pred HhccCccce----------------eeeEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCC
Q 013511 229 QFNGNAESR----------------AAGMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRP 289 (441)
Q Consensus 229 ~ls~g~~~r----------------~~~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~ 289 (441)
.||+|++|+ ..++|+|| +++||+..+..+.++++++.. .+|++++|+.. ....||
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~------~~~~~d 321 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE------LKDAAD 321 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG------GGGGCS
T ss_pred HCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH------HHHhCC
Confidence 488888874 23599999 999999999999999988753 38888999832 235689
Q ss_pred CeEEEEec
Q 013511 290 NVDVVKLQ 297 (441)
Q Consensus 290 ~v~vl~l~ 297 (441)
++.++...
T Consensus 322 ~~~~l~~~ 329 (339)
T 3qkt_A 322 HVIRISLE 329 (339)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 98888653
No 123
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.52 E-value=6.4e-08 Score=96.08 Aligned_cols=27 Identities=41% Similarity=0.538 Sum_probs=25.0
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+|++++|+||||||||||+++|+|+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 356779999999999999999999999
No 124
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.52 E-value=1.3e-08 Score=98.75 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=29.6
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccC---Cceee
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITI---PGCIA 179 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~---~G~~~ 179 (441)
+..|++++|+||||||||||+|+|+|+ ..|..|+|.+ .|...
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~------------~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPG------------LKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTT------------CCCC-------------C
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccc------------ccccccceecccCCCCCc
Confidence 457999999999999999999999999 9999999998 77644
No 125
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.52 E-value=1.2e-07 Score=86.74 Aligned_cols=39 Identities=33% Similarity=0.298 Sum_probs=35.9
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI 167 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp 167 (441)
+.+|++++|+||||||||||++.|++ ..+.+++|+|.+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 68999999999999999999999999 6788999998875
No 126
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.47 E-value=5e-08 Score=90.66 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=22.8
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHH-HH
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLL-SW 152 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~-g~ 152 (441)
++||++.+|++++|+||||||||||+++|+ ++
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 489999999999999999999999999999 98
No 127
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.42 E-value=3.4e-08 Score=94.47 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=41.2
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+.++.++.+.|+.. .++++ +++.+.+| ++|+||||||||||+++|++.
T Consensus 47 ~~~~~l~~l~~~~~~~--~~l~~--~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 47 EAKEELKEIVEFLKNP--SRFHE--MGARIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHHHHHHHHHHHCH--HHHHH--TTCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCH--HHHHH--cCCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 3456788898888764 34444 78888888 999999999999999999998
No 128
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.40 E-value=2.6e-07 Score=82.79 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
|++++|+||||||||||+|+|++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 678999999999999999999874
No 129
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.38 E-value=5.1e-08 Score=91.81 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=41.2
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+.++.++.+.|+.. .++++ +++.+.+| ++|+||||||||||+++|++.
T Consensus 23 ~~~~~l~~l~~~~~~~--~~~~~--~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 23 EAKEELKEIVEFLKNP--SRFHE--MGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHHHHHHHHHHHCH--HHHHH--TTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCH--HHHHH--cCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 3467788998888664 34444 78888888 999999999999999999998
No 130
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.32 E-value=6.9e-08 Score=91.16 Aligned_cols=51 Identities=18% Similarity=0.328 Sum_probs=33.5
Q ss_pred CchhHHHH-HHHH-hhhhhhhccCCCCCCCCCC---CCEEEEECCCCCChhHHHHHHHHH
Q 013511 98 PMVSYVNV-NAVL-EGRRNHAKASPSKDSDASQ---GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 98 ~ml~~~nl-~~~~-~~~~~~~l~~~~vsl~i~~---G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++++.|+ ++.| +.. .++++ ++|++.+ |++++|+|++||||||++++|++.
T Consensus 16 ~~l~~~~~~~~~~~~~~--~~l~~--~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQ--QILKK--KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ----------------C--HHHHH--HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcc--hhhhh--hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999 9999 443 46765 9999999 999999999999999999999996
No 131
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.32 E-value=8.3e-07 Score=85.81 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=52.5
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
+.+.++++.|+... + +++++ +|++++++|+||+||||+++.|+++....|+++.++|.|+..
T Consensus 77 ~~~~~l~~~~~~~~----~--~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 77 TVYEALKEALGGEA----R--LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp HHHHHHHHHTTSSC----C--CCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred HHHHHHHHHHCCCC----c--eeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 45678888886531 2 37776 899999999999999999999999998899999999999864
No 132
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.31 E-value=1e-07 Score=92.52 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=32.5
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccC---Cceee
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITI---PGCIA 179 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~---~G~~~ 179 (441)
...|++++|+||||||||||+|+|+ . +.|.+|+|.+ .|...
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~------------~~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-G------------EELRTQEVSEKTERGRHT 205 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-S------------CCCCCSCC---------C
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-H------------hhCcccccccccCCCCCc
Confidence 3579999999999999999999999 8 9999999999 78643
No 133
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.28 E-value=2.4e-07 Score=84.64 Aligned_cols=27 Identities=37% Similarity=0.340 Sum_probs=25.8
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+|++++|+||||||||||+++|+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999999999
No 134
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.28 E-value=3e-07 Score=82.30 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=32.7
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+.+|++++|+||||||||||+|+|++. ++.|.|.++|.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--------------~~~g~i~i~~d 43 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--------------PGVPKVHFHSD 43 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--------------SSSCEEEECTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--------------cCCCeEEEccc
Confidence 688999999999999999999999985 45677777764
No 135
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.28 E-value=1.8e-07 Score=89.50 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=26.2
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWA 153 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a 153 (441)
+.+|++++|+||||||||||++.|++.+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999999999963
No 136
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.26 E-value=1e-06 Score=86.08 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=45.5
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
+++|...+|++++|+|+||+||||++..|+++....|++++++|.|+..
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 3788889999999999999999999999999998899999999999854
No 137
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.22 E-value=6e-07 Score=81.48 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+|.+++|+||||||||||+++|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999999998
No 138
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.20 E-value=7.3e-07 Score=88.00 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=54.3
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
+++..+..+.|+.. .++++ +++...+|.+++|+|++|+|||||++.|++.....|.++.++|.||..
T Consensus 30 ~ie~~~~~~~~~~~--~~~~~--l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 30 LVESRHPRHQALST--QLLDA--IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHCCCHHHHHHHH--HHHHH--HGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HhhcCCchhhhHHH--HHHHh--CCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 45566677777654 23333 667778999999999999999999999999988889999999999965
No 139
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.19 E-value=8.2e-08 Score=87.19 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=33.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
|+++.|+++.|+. .+++ ++.+.+|.+++|+|+||||||||++.|+|.
T Consensus 3 ~l~~~~~~~~~~~---~~l~----~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 3 NLNYQQTHFVMSA---PDIR----HLPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp --------CEEEE---SSGG----GSSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred chhhhhhhheeec---CCHh----HCCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5788999999963 2343 277899999999999999999999999986
No 140
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.18 E-value=8.9e-07 Score=79.36 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
|++++|+||||||||||+++|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 568999999999999999999998
No 141
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.17 E-value=1.8e-06 Score=83.78 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=42.9
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
+++...+|++++|+|+|||||||+++.|+++....|+++.++|.|+..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 455667899999999999999999999999988889999999998754
No 142
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.17 E-value=8.1e-08 Score=93.27 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=26.6
Q ss_pred CCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccC---Ccee
Q 013511 124 SDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITI---PGCI 178 (441)
Q Consensus 124 l~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~---~G~~ 178 (441)
+++.+|++++|+||||||||||+|+|+|. ..|..|+|.+ .|..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~------------~~~~~G~I~~~~~~G~~ 213 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE------------LGLRTNEISEHLGRGKH 213 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccc------------ccccccceeeecCCCcc
Confidence 56789999999999999999999999999 8899999988 6653
No 143
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.17 E-value=3.9e-08 Score=94.20 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=27.5
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++.+.+| ++|+||||||||||+|+|+|.
T Consensus 39 ~~l~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 39 LGLVTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp TTCCCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred cCCCCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 78888888 999999999999999999998
No 144
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.15 E-value=1.3e-06 Score=79.52 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=24.4
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+|++++|+||||||||||+++|+++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999999998
No 145
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.12 E-value=6.5e-07 Score=81.18 Aligned_cols=28 Identities=36% Similarity=0.342 Sum_probs=26.2
Q ss_pred CCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 125 DASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 125 ~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
...+|++++|+|||||||||+++.|++.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999999998
No 146
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.11 E-value=8.7e-07 Score=87.72 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=30.2
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-CCCCcccCC-ce
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-IGQGAITIP-GC 177 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-p~~G~i~~~-G~ 177 (441)
.+|++++|+||||||||||+++|+|. .. |..|+|... |.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~------------~~~~~~G~I~~~~G~ 253 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGL------------QNEILTNDVSNVSGL 253 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCC------------SSCCCCC--------
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcc------------ccccccCCccccCCC
Confidence 37899999999999999999999999 88 999999875 63
No 147
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.11 E-value=4e-07 Score=91.69 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.6
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLS 151 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g 151 (441)
+.+|++++|+||+|||||||++.|+-
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 67999999999999999999997753
No 148
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.10 E-value=8.8e-08 Score=89.04 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=29.7
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
++++|+||||||||||+++|+++ +.|++|.|.++|...
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~------------~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTA------------LIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHH------------HSCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcc------------cccCCCeEEECCEEc
Confidence 57889999999999999999999 999999999999754
No 149
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.09 E-value=4.8e-06 Score=80.48 Aligned_cols=62 Identities=23% Similarity=0.328 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhhhhhccCCC-CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC
Q 013511 102 YVNVNAVLEGRRNHAKASPS-KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG 170 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~-vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G 170 (441)
..++.+.|++.. .+ ++++.+ |.+++++|++|+||||++..|++++.+.|++++++|.|+...
T Consensus 77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 456666665431 23 666665 899999999999999999999999999999999999998653
No 150
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.08 E-value=1.4e-06 Score=78.71 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=25.4
Q ss_pred CCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 125 DASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 125 ~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++.+|++++|+|||||||||++++|+++
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4688999999999999999999999998
No 151
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.03 E-value=2.2e-06 Score=77.65 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=24.4
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+|++++|+||||||||||+|+|++.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999999998
No 152
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.03 E-value=4.2e-06 Score=82.76 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=38.8
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI 167 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp 167 (441)
+.+|.++.|.||+|||||||+..++..+.+.|.+++|+|.+.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 568999999999999999999999988889999999999874
No 153
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.01 E-value=1.1e-05 Score=81.89 Aligned_cols=42 Identities=29% Similarity=0.341 Sum_probs=38.8
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
++.+++++|++||||||++..|+.++.+.|++|+++|.|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 577999999999999999999999999999999999999753
No 154
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.97 E-value=9.3e-06 Score=82.19 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=49.6
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
..++.+.|+... .++++. ++.+++++|++||||||++..|+++....|++++++|.|+..
T Consensus 79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 346677776531 136776 888999999999999999999999998899999999999865
No 155
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=4.6e-06 Score=75.43 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=24.5
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++||++.+|.+++|+|++||||||+++.|+..
T Consensus 17 ~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 17 NLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 49999999999999999999999999999987
No 156
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.97 E-value=1.1e-06 Score=77.87 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=30.3
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC---CCcccCCceee
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG---QGAITIPGCIA 179 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~---~G~i~~~G~~~ 179 (441)
++++|+|+||||||||+++|+++ ++|. .|.|.++|...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~------------~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI------------LRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH------------HHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHH------------hhhcCCceEEEEEcCccc
Confidence 58999999999999999999999 7776 78888888653
No 157
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.95 E-value=4.5e-06 Score=74.31 Aligned_cols=26 Identities=12% Similarity=0.353 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+|++++|+||||||||||+++|++.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999999998
No 158
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.95 E-value=8.2e-06 Score=73.96 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=29.7
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEE
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFV 163 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~v 163 (441)
..+|.+++|+|++|||||||+++|++..-..+..+.++
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 47889999999999999999999999933333333333
No 159
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.95 E-value=1e-06 Score=82.59 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=32.2
Q ss_pred CCCEEEEECCCCCChhHHHHHHH---HHHHHcCCccEEEeccCCCCcccCCc
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLL---SWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~---g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++++++|+||||||||||+|+|+ |+ ..|+.|++...|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~------------~~~~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGL------------QHLSSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC------------CCEEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC------------eEecHHHHHHHH
Confidence 47899999999999999999999 77 677778887665
No 160
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.94 E-value=2.4e-06 Score=83.37 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=21.5
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+||||||||||+++|.++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999998
No 161
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.92 E-value=5.9e-06 Score=73.28 Aligned_cols=39 Identities=26% Similarity=0.201 Sum_probs=32.5
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCccc
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAIT 173 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~ 173 (441)
+++.+.+| +++|+||||||||||+++|... +.+..|...
T Consensus 20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~~------------l~~~~~~~~ 58 (182)
T 3kta_A 20 VVIPFSKG-FTAIVGANGSGKSNIGDAILFV------------LGGLSAKAM 58 (182)
T ss_dssp EEEECCSS-EEEEEECTTSSHHHHHHHHHHH------------TTCCCTGGG
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHHH------------HcCCccccc
Confidence 56667788 9999999999999999999998 776666543
No 162
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.87 E-value=2.2e-06 Score=80.74 Aligned_cols=35 Identities=37% Similarity=0.666 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCCCChhHHHHHHH---HHHHHcCCccEEEeccCCCCccc
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLL---SWAAKLGWKPTFVDLDIGQGAIT 173 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~---g~a~~~g~~~~~vDldp~~G~i~ 173 (441)
.+|++++|+||+||||||++|+|+ |+ ..+++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~------------~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNW------------RLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTC------------EEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCC------------CcCCCCcee
Confidence 679999999999999999999999 77 677788887
No 163
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.84 E-value=4.7e-05 Score=77.26 Aligned_cols=43 Identities=28% Similarity=0.291 Sum_probs=39.2
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG 170 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G 170 (441)
++.+++++|++||||||++..|+.++.+.|++|+++|.|+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 4568999999999999999999999999999999999998643
No 164
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.80 E-value=1.3e-05 Score=70.35 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.|.+++|+|++||||||++++|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999997
No 165
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.78 E-value=2.6e-05 Score=69.20 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=36.4
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
-++++|+|++|||||||++.|++...+.|+++..+..++...++--+|.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~~id~~g~ 54 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGK 54 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCccccCCCCC
Confidence 3689999999999999999999987788999999988887655543454
No 166
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.78 E-value=2.2e-05 Score=71.16 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=25.4
Q ss_pred CCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 125 DASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 125 ~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
...+|+.++|+||+|||||||++.|++.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999999997
No 167
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.77 E-value=2.9e-05 Score=68.55 Aligned_cols=49 Identities=29% Similarity=0.275 Sum_probs=35.9
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCccc-CCcee
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAIT-IPGCI 178 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~-~~G~~ 178 (441)
++++|+|++|||||||+..|+..+.+.|+++..+..++..++|- -+|.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~~diD~~~g~D 54 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVD 54 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC------------
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCCcccccCCChh
Confidence 58999999999999999999998888899999999999876553 34543
No 168
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.74 E-value=2.3e-05 Score=68.99 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=24.6
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+|++++|+|++||||||+++.|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 57899999999999999999999997
No 169
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.73 E-value=1.6e-05 Score=72.43 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=24.8
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+|++++|+||||||||||++.|++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 57999999999999999999999997
No 170
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.73 E-value=2.7e-05 Score=72.08 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=37.9
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG 168 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~ 168 (441)
+.+|++++|+||||||||||+..++..+++.+.+++|++.+..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 5789999999999999999988777777788999999988754
No 171
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.72 E-value=1.3e-05 Score=80.39 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=36.8
Q ss_pred CCCCCCEEEEECCCCCChhHHHHHHHHHHH-HcCCccEEEeccCCCCcccCCc
Q 013511 125 DASQGPRVIVVGPTDSGKSTLSRMLLSWAA-KLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 125 ~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~-~~g~~~~~vDldp~~G~i~~~G 176 (441)
++.+|.+++|+|+||||||||+++|+|.-. .....| +.-.+|..|.+.++|
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p-~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYP-YATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCS-SCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCC-ceeecceeeeeeeCC
Confidence 368899999999999999999999999311 111111 001678888888876
No 172
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.71 E-value=3.2e-05 Score=68.86 Aligned_cols=41 Identities=29% Similarity=0.398 Sum_probs=34.5
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
..+|.+++|+|++||||||+++.|+...-..|+++.++|.|
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 46789999999999999999999999966667777676643
No 173
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.69 E-value=1.5e-05 Score=68.85 Aligned_cols=52 Identities=6% Similarity=0.210 Sum_probs=42.5
Q ss_pred eeeEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 238 AAGMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 238 ~~~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
..++|+|| ++++|+..++.+.++++++.. .+||+++|+ + .....|+++.++.
T Consensus 82 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~-----~-~~~~~~d~ii~l~ 136 (148)
T 1f2t_B 82 ISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD-----E-ELKDAADHVIRIS 136 (148)
T ss_dssp CSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESC-----G-GGGGGCSEEEEEE
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEECh-----H-HHHHhCCEEEEEE
Confidence 45899999 999999999999999998753 489999999 4 3345789987774
No 174
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.67 E-value=3.9e-05 Score=75.83 Aligned_cols=44 Identities=25% Similarity=0.287 Sum_probs=37.7
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG 170 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G 170 (441)
..+++++|+|++|||||||++.|++.....+.++.++..||.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 45889999999999999999999999888888999999998753
No 175
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.67 E-value=1.6e-05 Score=73.73 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=26.3
Q ss_pred CCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 124 SDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 124 l~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
....+|.+++|.|+||||||||+++|+++
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34588999999999999999999999985
No 176
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.66 E-value=3.7e-05 Score=68.00 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEe
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVD 164 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vD 164 (441)
.+|.+++|+|++||||||++++|+++....|+..+.+|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 46899999999999999999999998433344444343
No 177
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.63 E-value=1.3e-06 Score=85.82 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=29.6
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+.++|+||||+|||||+|+|++.. +.. ..+.+|.+...+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l---~~~-----~~~~sg~~~~~~~ 91 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL---QTN-----IHVTSGPVLVKQG 91 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH---TCC-----EEEEETTTCCSHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh---CCC-----EEEEechHhcCHH
Confidence 689999999999999999999982 111 1445666665543
No 178
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.62 E-value=1.7e-05 Score=84.24 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=35.8
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 103 VNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 103 ~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+++..|+... +++. +++.+..|+.++|+||+|+|||||+|+|+++
T Consensus 38 ~~l~~i~G~~~--~l~~--l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 38 KLIDQVIGQEH--AVEV--IKTAANQKRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp SHHHHCCSCHH--HHHH--HHHHHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred cccceEECchh--hHhh--ccccccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 45555565542 3333 6666788999999999999999999999998
No 179
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.62 E-value=1.5e-05 Score=83.32 Aligned_cols=41 Identities=37% Similarity=0.442 Sum_probs=35.0
Q ss_pred CCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC-ccc-CCce
Q 013511 125 DASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG-AIT-IPGC 177 (441)
Q Consensus 125 ~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G-~i~-~~G~ 177 (441)
.+.+|++++|+|+||||||||+|+|++. +.|.+| .+. ++|.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~------------L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR------------LMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH------------HHTTCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh------------hcccCCceEEEECCc
Confidence 3578999999999999999999999999 888776 564 6664
No 180
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.60 E-value=0.00012 Score=75.62 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=27.3
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.+.+.+++.++|.|++||||||++++|..-
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHH
Confidence 5666788999999999999999999998753
No 181
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.55 E-value=5.6e-05 Score=74.75 Aligned_cols=43 Identities=30% Similarity=0.422 Sum_probs=38.9
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG 168 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~ 168 (441)
+.+|.++.|.||+|||||||+..++..+.+.|.+++|+|....
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 5689999999999999999999999999888999999987643
No 182
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.54 E-value=5e-05 Score=68.76 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=31.1
Q ss_pred CCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 124 SDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 124 l~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
-.+.+|.+++|+|++||||||+++.|++.. ....++|.|
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~----~~~~~i~~D 54 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL----PNCSVISQD 54 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS----TTEEEEEGG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc----CCcEEEeCC
Confidence 347889999999999999999999999861 134566665
No 183
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.53 E-value=3.2e-05 Score=69.18 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.5
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-+++|+|+||||||||++.|+|.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 37999999999999999999997
No 184
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.52 E-value=4.2e-05 Score=80.11 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=44.4
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
-+.++.+.|... .++.. +++.+ +|+.++++||+|+|||||+|+|++. +.+..+.+.+.|
T Consensus 85 G~~~vk~~i~~~--~~l~~--~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~------------l~~~~~~i~~~~ 143 (543)
T 3m6a_A 85 GLEKVKERILEY--LAVQK--LTKSL-KGPILCLAGPPGVGKTSLAKSIAKS------------LGRKFVRISLGG 143 (543)
T ss_dssp SCHHHHHHHHHH--HHHHH--HSSSC-CSCEEEEESSSSSSHHHHHHHHHHH------------HTCEEEEECCCC
T ss_pred cHHHHHHHHHHH--HHHHH--hcccC-CCCEEEEECCCCCCHHHHHHHHHHh------------cCCCeEEEEecc
Confidence 356777777654 23333 55656 8999999999999999999999999 666666666555
No 185
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.51 E-value=6.6e-05 Score=76.26 Aligned_cols=41 Identities=29% Similarity=0.438 Sum_probs=38.2
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG 170 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G 170 (441)
.+++|+|++|+||||++..|++.+.+.|++|+++|.|+...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~ 140 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRP 140 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCc
Confidence 58999999999999999999999999999999999999643
No 186
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.50 E-value=2e-05 Score=78.60 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=29.5
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++.+.+|++++|+||+|||||||+++|++.
T Consensus 162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6778999999999999999999999999997
No 187
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.47 E-value=3.3e-05 Score=70.76 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.+++|+||+||||||++++|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999987
No 188
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.46 E-value=0.00042 Score=62.16 Aligned_cols=39 Identities=3% Similarity=0.028 Sum_probs=28.2
Q ss_pred eeeeEEEeCCCCCCchhHHHHHHHHHHcCCC-EEEEeCCc
Q 013511 237 RAAGMVINTMGWIEGVGYELLLHAIDTFKAN-VVLVLGQE 275 (441)
Q Consensus 237 r~~~lIlDE~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~ 275 (441)
+..++++||..++++...+.+..+++....+ .+|++++.
T Consensus 102 ~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 3467999997778877788888888887666 34444443
No 189
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.42 E-value=0.0001 Score=65.32 Aligned_cols=52 Identities=8% Similarity=0.104 Sum_probs=42.3
Q ss_pred eeEEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 239 AGMVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 239 ~~lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
.++|+|| +++||+.....+.++|+++..+ .+|+++|+. . ....||++..+.+
T Consensus 88 ~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~-----~-~~~~ad~i~~v~~ 141 (173)
T 3kta_B 88 PFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRD-----V-MMANADKIIGVSM 141 (173)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH-----H-HHTTCSEEEEEEE
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecH-----H-HHHhCCEEEEEEe
Confidence 4799999 9999999999999999988654 788888882 2 2357899887765
No 190
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.41 E-value=0.00022 Score=70.52 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=29.2
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHc-CCccEEEecc
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKL-GWKPTFVDLD 166 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~-g~~~~~vDld 166 (441)
.++|.||+|+|||||++.+++.+... ++.+++++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~ 82 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF 82 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc
Confidence 89999999999999999999985554 4556666643
No 191
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.41 E-value=9.3e-05 Score=81.59 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=58.5
Q ss_pred HHHhccCccceeee------------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCe
Q 013511 227 ERQFNGNAESRAAG------------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNV 291 (441)
Q Consensus 227 ~~~ls~g~~~r~~~------------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v 291 (441)
...||+||+||+.+ +|+|| +++||+...+.+.+++++++. .+||+++|+ ++.. +.||++
T Consensus 462 ~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd-----~~~~-~~aD~i 535 (916)
T 3pih_A 462 ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD-----EEVI-RNADHI 535 (916)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC-----HHHH-HTCSEE
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHH-HhCCEE
Confidence 45689999988654 99999 999999999999999999975 399999999 5544 358998
Q ss_pred EEEEec---CCCCeeeCCh
Q 013511 292 DVVKLQ---KSGGVVSRNS 307 (441)
Q Consensus 292 ~vl~l~---~~g~vv~~~~ 307 (441)
.++.-. +.|.++..++
T Consensus 536 i~lgpgag~~~G~iv~~G~ 554 (916)
T 3pih_A 536 IDIGPGGGTNGGRVVFQGT 554 (916)
T ss_dssp EEEESSSGGGCSEEEEEEC
T ss_pred EEEcCCcccCCCEEEEeec
Confidence 776211 3566666665
No 192
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.40 E-value=0.00011 Score=66.88 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=25.9
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWA 153 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a 153 (441)
+.+|.+++|+|++||||||+++.|++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999999999983
No 193
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.40 E-value=0.0006 Score=62.86 Aligned_cols=37 Identities=19% Similarity=0.045 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEE
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFV 163 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~v 163 (441)
.+|.++.+.|+.|+||||++.-++..+...|.+++++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5688999999999999998888888878889999987
No 194
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.36 E-value=0.00047 Score=58.78 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+.-++|.||+|+|||++++.|...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999999987
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.34 E-value=0.00021 Score=66.90 Aligned_cols=45 Identities=29% Similarity=0.433 Sum_probs=40.2
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
.+..+++++|..|+|||||+..|+..+. .|+++++||.||+...+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~ 56 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKEL 56 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCcccc
Confidence 4567899999999999999999998887 99999999999986654
No 196
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.33 E-value=8e-05 Score=67.30 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|++||||||++++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999884
No 197
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.32 E-value=0.00015 Score=64.52 Aligned_cols=32 Identities=16% Similarity=0.463 Sum_probs=26.4
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++|++..+|.+++|+|++||||||+++.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 36778889999999999999999999999875
No 198
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.31 E-value=0.00019 Score=71.02 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=37.1
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG 170 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G 170 (441)
....+++|+|+.|+|||||+..|+..+...|+++.++|.||...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST 120 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 34568999999999999999999999888999999999999764
No 199
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.29 E-value=0.00012 Score=65.92 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|++||||||++++|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 7899999999999999999984
No 200
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.29 E-value=0.002 Score=56.20 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWA 153 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a 153 (441)
.+..++|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999984
No 201
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.28 E-value=0.00012 Score=80.46 Aligned_cols=74 Identities=12% Similarity=0.182 Sum_probs=57.1
Q ss_pred HHhccCccceeee------------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 228 RQFNGNAESRAAG------------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 228 ~~ls~g~~~r~~~------------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
..||+||+||+.+ +|+|| +++||+...+.|.++|++++. .+||+++|+ ++.. +.||++.
T Consensus 503 ~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd-----l~~i-~~ADrIi 576 (972)
T 2r6f_A 503 GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD-----EDTM-LAADYLI 576 (972)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC-----HHHH-HSCSEEE
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC-----HHHH-HhCCEEE
Confidence 3589999988654 99999 999999999999999999864 499999999 5543 4689988
Q ss_pred EEEe---cCCCCeeeCCh
Q 013511 293 VVKL---QKSGGVVSRNS 307 (441)
Q Consensus 293 vl~l---~~~g~vv~~~~ 307 (441)
++.- ...|.++..++
T Consensus 577 ~LgpgaG~~gG~iv~~G~ 594 (972)
T 2r6f_A 577 DIGPGAGIHGGEVVAAGT 594 (972)
T ss_dssp EECSSSGGGCCSEEEEEC
T ss_pred EeCCCccCCCCEEEEecC
Confidence 7721 03566766553
No 202
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.28 E-value=0.00022 Score=73.64 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=40.3
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+.++.++...|... ..+++ +++.+.+| ++|+||+|+|||||+|+|++.
T Consensus 38 ~~k~~l~~lv~~l~~~--~~~~~--lg~~ip~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 38 EAKEELKEIVEFLKNP--SRFHE--MGARIPKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp HHHHHHHHHHHHHHCG--GGTTT--TSCCCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhch--hhhhh--ccCCCCce--EEEECCCCCCHHHHHHHHHHH
Confidence 3467788888877654 24443 77888888 999999999999999999998
No 203
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.28 E-value=0.00016 Score=69.50 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=25.9
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAK 155 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~ 155 (441)
.++.+++|+|++|||||||++.|.++.-.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999998543
No 204
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.24 E-value=0.00037 Score=70.72 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=38.0
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHc-CCccEEEeccCCC
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKL-GWKPTFVDLDIGQ 169 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~-g~~~~~vDldp~~ 169 (441)
+..+++++|++|+||||++--|+.++.+. |++|+++|.|+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 34588999999999999999999998888 9999999999864
No 205
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.24 E-value=0.00016 Score=73.36 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=25.3
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+..|++++|+||||||||||+++|+++
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999999999998
No 206
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.23 E-value=0.00021 Score=76.56 Aligned_cols=29 Identities=34% Similarity=0.382 Sum_probs=25.7
Q ss_pred CCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 124 SDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 124 l~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.+.++..++|+|++|+|||||++.|++.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 45678999999999999999999999988
No 207
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.23 E-value=0.00028 Score=65.31 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=25.3
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+|.+++|.|++||||||+++.|+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 348999999999999999999999998
No 208
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.21 E-value=5.5e-05 Score=75.02 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=41.4
Q ss_pred hhHHHHHHHHhhhhhhhccCC------------CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHc
Q 013511 100 VSYVNVNAVLEGRRNHAKASP------------SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKL 156 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~------------~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~ 156 (441)
+.++|++..|...|. .++.. |+.+.+.+|++++|+||+|+|||||++.|++.+...
T Consensus 134 i~Fe~ltp~yP~er~-~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 134 ILFENLTPLHANSRL-RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp CCTTTSCEESCCSBC-CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred ceeccccccCCCCcc-ccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 456666666655442 23200 367889999999999999999999999999986543
No 209
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.19 E-value=0.0002 Score=78.24 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=56.3
Q ss_pred HhccCccceee------------eEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 229 QFNGNAESRAA------------GMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 229 ~ls~g~~~r~~------------~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
.||+|++||+. ++|+|| +++||+...+.+.+++++++. .+||+++|+ +. .++.+|++.+
T Consensus 379 tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHd-----l~-~l~~aD~ii~ 452 (842)
T 2vf7_A 379 TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHD-----LD-VIRRADWLVD 452 (842)
T ss_dssp GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC-----HH-HHTTCSEEEE
T ss_pred cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCC-----HH-HHHhCCEEEE
Confidence 48899998865 599999 999999999999999998864 499999999 65 3457899877
Q ss_pred EEe---cCCCCeeeCCh
Q 013511 294 VKL---QKSGGVVSRNS 307 (441)
Q Consensus 294 l~l---~~~g~vv~~~~ 307 (441)
+.- ...|.++..++
T Consensus 453 lgpgaG~~~G~iv~~g~ 469 (842)
T 2vf7_A 453 VGPEAGEKGGEILYSGP 469 (842)
T ss_dssp ECSSSGGGCCSEEEEEC
T ss_pred eCCCcccCCCEEEEecC
Confidence 711 02555665543
No 210
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.18 E-value=0.00014 Score=80.23 Aligned_cols=74 Identities=11% Similarity=0.204 Sum_probs=57.1
Q ss_pred HHhccCccceee------------eEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 228 RQFNGNAESRAA------------GMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 228 ~~ls~g~~~r~~------------~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
..||+||+||+. ++|+|| +++||+...+.|.++|++++. .+||+++|+ +... +.||++.
T Consensus 520 ~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd-----l~~i-~~ADrIi 593 (993)
T 2ygr_A 520 ATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHD-----EDTI-EHADWIV 593 (993)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC-----HHHH-HTCSEEE
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCC-----HHHH-HhCCEEE
Confidence 358999998864 499999 999999999999999998863 499999999 5443 4689987
Q ss_pred EEEe---cCCCCeeeCCh
Q 013511 293 VVKL---QKSGGVVSRNS 307 (441)
Q Consensus 293 vl~l---~~~g~vv~~~~ 307 (441)
++.- ...|.++..++
T Consensus 594 ~Lgp~aG~~gG~iv~~G~ 611 (993)
T 2ygr_A 594 DIGPGAGEHGGRIVHSGP 611 (993)
T ss_dssp EECSSSGGGCCSCCEEEC
T ss_pred EecCccccCCCEEEEeeC
Confidence 7721 03566776665
No 211
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.17 E-value=0.00049 Score=70.01 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=23.9
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWAAK 155 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a~~ 155 (441)
+.-++|.||+|+|||||++.|++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567999999999999999999998543
No 212
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.16 E-value=0.00043 Score=64.85 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=25.4
Q ss_pred CCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 125 DASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 125 ~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
....+.+++|+|++||||||+++.|+..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3567889999999999999999999987
No 213
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.15 E-value=0.00044 Score=66.53 Aligned_cols=43 Identities=26% Similarity=0.159 Sum_probs=38.9
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
..+.+++|.|.-|+||||++-.|+..+.+.|++|++||+||..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4677899999999999999999999999999999999999953
No 214
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.15 E-value=4.9e-05 Score=76.77 Aligned_cols=32 Identities=22% Similarity=0.128 Sum_probs=29.9
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++++++.|+.++|+|+||||||||+++|++.
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 47888999999999999999999999999986
No 215
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.13 E-value=0.00032 Score=63.12 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+++|+|++||||||+++.|+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999987
No 216
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.12 E-value=0.0029 Score=62.08 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=31.2
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHc------CCccEEEecc
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKL------GWKPTFVDLD 166 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~------g~~~~~vDld 166 (441)
..+..++|.||.|+|||||++.+++.+.+. +...+++|..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 556789999999999999999999986554 4455555543
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.12 E-value=0.00047 Score=71.20 Aligned_cols=43 Identities=26% Similarity=0.409 Sum_probs=37.5
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
.+..+++|+|++||||||++..|+.++.+.|++|++||.|+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 3455899999999999999999999988889999999999853
No 218
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.11 E-value=0.0003 Score=67.51 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=29.1
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
++.+++|.||+||||||+++.|+...-..+.++.++|.|
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D 42 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence 457999999999999999999998654556667777766
No 219
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.11 E-value=0.00028 Score=63.76 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=25.2
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+|.+++|+||+|||||||++.|+..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999999987
No 220
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.08 E-value=0.00028 Score=63.19 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+||||||||++.|+|.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999999996
No 221
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.07 E-value=0.00052 Score=63.39 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=39.4
Q ss_pred CCCEEEEECC-CCCChhHHHHHHHHHHHHc-CCccEEEeccCCCCccc
Q 013511 128 QGPRVIVVGP-TDSGKSTLSRMLLSWAAKL-GWKPTFVDLDIGQGAIT 173 (441)
Q Consensus 128 ~G~~v~IvGp-nGsGKSTLlr~L~g~a~~~-g~~~~~vDldp~~G~i~ 173 (441)
.+.+++|.+. -|+||||++-.|+..+.+. |+++++||+||..|.+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~ 50 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLD 50 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGG
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHH
Confidence 4567888864 5899999999999999998 99999999999866653
No 222
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.07 E-value=0.0005 Score=60.74 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWA 153 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a 153 (441)
|.+++|.|++||||||+++.|+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999863
No 223
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.07 E-value=0.00044 Score=65.14 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=31.0
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
++.++.|+|++||||||+++.|+..+-..|+.++++|.|
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 467899999999999999999998865566665555543
No 224
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.04 E-value=0.00067 Score=62.36 Aligned_cols=43 Identities=23% Similarity=0.226 Sum_probs=37.6
Q ss_pred CEEEEEC-CCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 130 PRVIVVG-PTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 130 ~~v~IvG-pnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
.+++|.+ .-|+||||++-.|+..+.+.|+++++||+|+.+|.+
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l 46 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANL 46 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCH
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCh
Confidence 4677776 558999999999999999999999999999987764
No 225
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.03 E-value=0.0007 Score=61.83 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=32.6
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL 165 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl 165 (441)
.+..++|.||+|+|||||++.++..+...++.+.+++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 57899999999999999999999997777777776655
No 226
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.02 E-value=0.00058 Score=61.25 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=30.9
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL 165 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl 165 (441)
..++|.||+|+|||||++.|++.+.+.+.++.+++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 689999999999999999999997777776666654
No 227
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.98 E-value=0.0008 Score=61.02 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=27.4
Q ss_pred eeeEEEeCCCCCCchhHHHHHHHHHHcCCC-EEEEeCCc
Q 013511 238 AAGMVINTMGWIEGVGYELLLHAIDTFKAN-VVLVLGQE 275 (441)
Q Consensus 238 ~~~lIlDE~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~ 275 (441)
..++++||..+++....+.+...++..... .+|++++.
T Consensus 127 ~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 127 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred ceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 457999997778887788888888776555 45555544
No 228
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.98 E-value=0.00063 Score=67.21 Aligned_cols=42 Identities=31% Similarity=0.446 Sum_probs=38.7
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI 167 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp 167 (441)
+.+|.++.|.|++|+|||||+..++..+.+.|.+++|+|..-
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 568999999999999999999999998889999999999864
No 229
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.96 E-value=0.00082 Score=62.59 Aligned_cols=45 Identities=24% Similarity=0.323 Sum_probs=38.6
Q ss_pred CCEEEEEC-CCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCccc
Q 013511 129 GPRVIVVG-PTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAIT 173 (441)
Q Consensus 129 G~~v~IvG-pnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~ 173 (441)
+.+++|.+ .-|+||||++-.|+..+.+.|++|++||+||.++.+.
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~ 47 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLD 47 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHH
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChh
Confidence 34677776 5679999999999999999999999999999877653
No 230
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.96 E-value=0.00074 Score=63.43 Aligned_cols=42 Identities=26% Similarity=0.225 Sum_probs=37.5
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
+++|.|.-|+||||++-.|+..+.+.|+++++||+||..+..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~ 44 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADST 44 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSS
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHH
Confidence 577789999999999999999999999999999999976543
No 231
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.93 E-value=0.00048 Score=63.62 Aligned_cols=41 Identities=27% Similarity=0.193 Sum_probs=37.2
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
+++|.|.-|+||||++-.|+..+.+.|+++++||+||. |.+
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l 42 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCL 42 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cCh
Confidence 46779999999999999999999999999999999995 664
No 232
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.92 E-value=0.00065 Score=60.00 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=26.9
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEe
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVD 164 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vD 164 (441)
+++|+|+.||||||+++.|+...-..|+...++|
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 6899999999999999999997444455555553
No 233
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.92 E-value=0.00074 Score=67.42 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=34.6
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
.+..++|+|++|||||||++.|+......|.+++++|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 567899999999999999999999988889888887654
No 234
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.91 E-value=0.0006 Score=66.99 Aligned_cols=42 Identities=26% Similarity=0.207 Sum_probs=35.7
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHH------cCCccEEEeccC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAK------LGWKPTFVDLDI 167 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~------~g~~~~~vDldp 167 (441)
+.+|+++.|.||+|||||||+..|+..+.. .+.+++|+|..-
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 689999999999999999999999887544 467888888764
No 235
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.90 E-value=0.0012 Score=60.80 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=38.6
Q ss_pred CCCC-EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 127 SQGP-RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 127 ~~G~-~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
.+|. ++.+.|+.|+||||++-.++..+.+.|++++++|+|| ||..
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~-q~~~ 48 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET-HGRA 48 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-TTCH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC-CCCh
Confidence 3555 4788899999999999999999999999999999999 4543
No 236
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.89 E-value=0.00086 Score=58.67 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
|.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999886
No 237
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.88 E-value=0.0029 Score=61.53 Aligned_cols=37 Identities=5% Similarity=0.100 Sum_probs=27.6
Q ss_pred eeEEEeCCCCCCchhHHHHHHHHHHcCCC-EEEEeCCc
Q 013511 239 AGMVINTMGWIEGVGYELLLHAIDTFKAN-VVLVLGQE 275 (441)
Q Consensus 239 ~~lIlDE~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~ 275 (441)
.++++||...+++.....+.+++++...+ .+|++++.
T Consensus 135 ~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 135 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred eEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence 58999997778887788889999887665 34444443
No 238
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.85 E-value=0.0013 Score=58.36 Aligned_cols=35 Identities=29% Similarity=0.261 Sum_probs=28.1
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL 165 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl 165 (441)
+++|.|+.||||||+++.|+...-..|+.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 68999999999999999999986666776665543
No 239
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.85 E-value=0.0005 Score=60.68 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+|.+++|+|++||||||+++.|+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999999875
No 240
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.83 E-value=0.00043 Score=60.55 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=22.5
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+|.+++|+|++|+|||||++.|++.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999999875
No 241
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.83 E-value=0.0014 Score=63.15 Aligned_cols=46 Identities=28% Similarity=0.421 Sum_probs=41.2
Q ss_pred CCCCEEEEECC-CCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 127 SQGPRVIVVGP-TDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 127 ~~G~~v~IvGp-nGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
.++.+++|.|+ .|+||||++-.|+..+.+.|++|++||+|+.++.+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l 148 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYS 148 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCH
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccH
Confidence 45679999997 58999999999999999999999999999988765
No 242
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.80 E-value=0.00067 Score=58.34 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.8
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+.+|+|||||||||++..|.-.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 49999999999999999999854
No 243
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.80 E-value=0.0014 Score=66.97 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=38.5
Q ss_pred CCCCCCEEEEECCCCCChhHHHHHHHHHHHH-cCCccEEEeccCC
Q 013511 125 DASQGPRVIVVGPTDSGKSTLSRMLLSWAAK-LGWKPTFVDLDIG 168 (441)
Q Consensus 125 ~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~-~g~~~~~vDldp~ 168 (441)
-+.+|+.++|.|++|+|||||+..|+..+.. .|.+++|+++.-.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 3789999999999999999999999988776 5789999988754
No 244
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.79 E-value=0.00073 Score=61.47 Aligned_cols=32 Identities=31% Similarity=0.398 Sum_probs=25.9
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
+.+++|.|++||||||+++.|+.+ | ..++|.|
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~l----g--~~~id~D 35 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFADL----G--INVIDAD 35 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT----T--CEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHc----C--CEEEEcc
Confidence 458999999999999999999873 3 3566664
No 245
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.79 E-value=0.0013 Score=62.64 Aligned_cols=42 Identities=26% Similarity=0.293 Sum_probs=37.5
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
+++|.|.-|+||||++-.|+..+.+.|+++++||+||..+..
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~ 45 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADST 45 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHH
Confidence 577789999999999999999999999999999999976543
No 246
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.75 E-value=0.00076 Score=65.67 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=35.6
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHc------CCccEEEeccC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKL------GWKPTFVDLDI 167 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~------g~~~~~vDldp 167 (441)
+.+|.++.|.||+|||||||+..++..+.+. +.+++|+|..-
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 5789999999999999999999998775544 67888888764
No 247
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.75 E-value=0.00086 Score=58.11 Aligned_cols=22 Identities=32% Similarity=0.262 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|++||||||+++.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999876
No 248
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.75 E-value=0.0018 Score=60.71 Aligned_cols=45 Identities=29% Similarity=0.313 Sum_probs=38.9
Q ss_pred CCCEEEEECC-CCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 128 QGPRVIVVGP-TDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 128 ~G~~v~IvGp-nGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
.+.+++|.+. -|+||||++-.|+..+.+.|+++++||+||..+.+
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l 62 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSI 62 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHH
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCH
Confidence 3568888864 57999999999999999999999999999987654
No 249
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.71 E-value=0.001 Score=62.23 Aligned_cols=45 Identities=29% Similarity=0.397 Sum_probs=38.2
Q ss_pred CCCCEEEEEC-CCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 127 SQGPRVIVVG-PTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 127 ~~G~~v~IvG-pnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
..+.+++|.+ .-|+||||++-.|+..+.+.|+++++||+||. |.+
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~~ 49 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ-GNA 49 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT-CHH
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC-cCH
Confidence 3467888885 55899999999999999999999999999995 654
No 250
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.68 E-value=0.0015 Score=64.79 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=39.2
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG 168 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~ 168 (441)
+.+|.++.|.|+.|+|||||+..++..+.+.|.+++|+|.+..
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 113 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4689999999999999999999998888888999999999854
No 251
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.68 E-value=0.00084 Score=58.81 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.6
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|++||||||+++.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999886
No 252
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.68 E-value=0.00056 Score=65.97 Aligned_cols=26 Identities=38% Similarity=0.392 Sum_probs=23.3
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++.+++|+|++|+|||||++.|+|.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 44569999999999999999999986
No 253
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.68 E-value=0.0019 Score=62.61 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=38.0
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG 168 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~ 168 (441)
+.+|+.+.|.|++|+|||||+..++..+...|.+++|+.+.-.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 6899999999999999999999998877777888888887743
No 254
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.68 E-value=0.0024 Score=60.48 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=40.8
Q ss_pred CCCCEEEEECC-CCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 127 SQGPRVIVVGP-TDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 127 ~~G~~v~IvGp-nGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
.+..+++|.++ .|+||||++-.|+..+.+.|+++++||+|+..+.+
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l 126 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQ 126 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCH
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccH
Confidence 45678999986 58999999999999999999999999999987764
No 255
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.68 E-value=0.0064 Score=58.25 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=26.9
Q ss_pred eeeEEEeCCCCCCchhHHHHHHHHHHcCCCEE-EEeCC
Q 013511 238 AAGMVINTMGWIEGVGYELLLHAIDTFKANVV-LVLGQ 274 (441)
Q Consensus 238 ~~~lIlDE~~~lD~~~~~~l~~li~~~~~~~V-ivi~h 274 (441)
..++++||...++....+.+.+.++....+++ |+++.
T Consensus 111 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 111 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 45899999777777778888889988766643 34443
No 256
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.67 E-value=0.0016 Score=58.22 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=34.7
Q ss_pred EEEEEC-CCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC
Q 013511 131 RVIVVG-PTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG 170 (441)
Q Consensus 131 ~v~IvG-pnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G 170 (441)
+++|.+ .-|+||||++-.|+..+.+.|+++++||+||..+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~ 43 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMS 43 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 566774 5679999999999999999999999999998644
No 257
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.67 E-value=0.0011 Score=61.21 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=24.4
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.+|.+++|+|++||||||+++.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999999999999984
No 258
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.65 E-value=0.0024 Score=60.99 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
...+..+.|+||+||||||+++.|+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356778999999999999999999886
No 259
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.64 E-value=0.013 Score=55.26 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+.-++|.||+|+|||||++.|++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 55677999999999999999999987
No 260
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.64 E-value=0.0015 Score=62.29 Aligned_cols=44 Identities=27% Similarity=0.287 Sum_probs=38.0
Q ss_pred CEEEEEC-CCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCccc
Q 013511 130 PRVIVVG-PTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAIT 173 (441)
Q Consensus 130 ~~v~IvG-pnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~ 173 (441)
.+++|.+ .-|+||||++-.|+..+.+.|+++++||+||.+|.+.
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~ 49 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSA 49 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHH
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHH
Confidence 3677765 5689999999999999999999999999999877653
No 261
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.64 E-value=0.002 Score=56.90 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=27.2
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEe
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVD 164 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vD 164 (441)
+++|.|+.||||||+++.|+...-..|+.++..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6899999999999999999987544566655444
No 262
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.63 E-value=0.0018 Score=59.60 Aligned_cols=43 Identities=28% Similarity=0.419 Sum_probs=36.1
Q ss_pred CCCCCEEEEECCCCCChhHHHHHH-HHHHHHcCCccEEEeccCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRML-LSWAAKLGWKPTFVDLDIG 168 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L-~g~a~~~g~~~~~vDldp~ 168 (441)
+.+|..+.|.|++|+|||||+.-+ .+.+.+.++.++|+++.-.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 578999999999999999998655 5666777899999888754
No 263
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.63 E-value=0.0017 Score=58.86 Aligned_cols=40 Identities=20% Similarity=0.099 Sum_probs=33.3
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
-.+++|+|+.|||||||++.|++..... +++..++.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~ 69 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVS 69 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCC
Confidence 3589999999999999999999875444 788888888853
No 264
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.62 E-value=0.0016 Score=63.02 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEe
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVD 164 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vD 164 (441)
.+..++|.||+|+|||||++.|++.+.+.+..+++++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4567999999999999999999999655555555544
No 265
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.62 E-value=0.002 Score=57.83 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+|.+++|.|+.||||||+++.|+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999987
No 266
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.62 E-value=0.00054 Score=61.86 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=26.2
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEE
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFV 163 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~v 163 (441)
+++|+|++||||||+++.|+...-..|+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 689999999999999999999854444444444
No 267
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.61 E-value=0.0012 Score=58.08 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=24.2
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..++..++|+|++||||||+++.|+..
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999876
No 268
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.61 E-value=0.0013 Score=64.89 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=30.6
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
+.++|+|++|||||||++.|+|.-. ++.++|.++-....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~----------lp~~~~~vT~~p~~ 73 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDF----------LPRGSGIVTRRPLV 73 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCC----------SCCCSSSCCCSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCc----------CCCCCCcccCcceE
Confidence 4999999999999999999999300 57777777655443
No 269
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.61 E-value=0.0024 Score=57.52 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=27.8
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCcc
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKP 160 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~ 160 (441)
.+|.+++|+|+.||||||+++.|+...-..+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 5688999999999999999999998744344444
No 270
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.59 E-value=0.0017 Score=62.03 Aligned_cols=42 Identities=26% Similarity=0.387 Sum_probs=37.2
Q ss_pred CCEEEEEC---CCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC
Q 013511 129 GPRVIVVG---PTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG 170 (441)
Q Consensus 129 G~~v~IvG---pnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G 170 (441)
+.+++|.+ .-|+||||++-.|+..+.+.|+++++||+||..+
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~ 78 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQAT 78 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 56777776 8899999999999999889999999999999754
No 271
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.57 E-value=0.00093 Score=57.73 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=21.0
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+++|+|++|+|||||++.|++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999874
No 272
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.55 E-value=0.0027 Score=60.68 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=40.6
Q ss_pred CCCCEEEEECC-CCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 127 SQGPRVIVVGP-TDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 127 ~~G~~v~IvGp-nGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
.++.+++|.++ .|+||||++-.|+-.+.+.|+++++||+|+..+.+
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l 136 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYT 136 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCH
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCH
Confidence 45678999986 58999999999999999999999999999987764
No 273
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.55 E-value=0.0012 Score=64.82 Aligned_cols=30 Identities=40% Similarity=0.526 Sum_probs=25.9
Q ss_pred CCCCCCCCE--EEEECCCCCChhHHHHHHHHH
Q 013511 123 DSDASQGPR--VIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 123 sl~i~~G~~--v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++.+.+|++ ++|+|++||||||++++|++.
T Consensus 16 ~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 16 DNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 344567777 999999999999999999987
No 274
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.55 E-value=0.0014 Score=61.12 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=21.1
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-+++|.|+.||||||+++.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999884
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.54 E-value=0.0012 Score=56.93 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=18.8
Q ss_pred CEEEEECCCCCChhHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRML 149 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L 149 (441)
.+++|+|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 276
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.54 E-value=0.0027 Score=59.34 Aligned_cols=44 Identities=32% Similarity=0.401 Sum_probs=37.4
Q ss_pred CEEEEE-CCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCccc
Q 013511 130 PRVIVV-GPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAIT 173 (441)
Q Consensus 130 ~~v~Iv-GpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~ 173 (441)
.+++|+ +.-|+||||++-.|+..+.+.|+++++||+|+.+|.+.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~ 47 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLE 47 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHH
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcc
Confidence 356665 46689999999999999999999999999999877653
No 277
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.0034 Score=60.11 Aligned_cols=38 Identities=3% Similarity=0.071 Sum_probs=26.9
Q ss_pred eeeEEEeCCCCCCchhHHHHHHHHHHcCCC-EEEEeCCc
Q 013511 238 AAGMVINTMGWIEGVGYELLLHAIDTFKAN-VVLVLGQE 275 (441)
Q Consensus 238 ~~~lIlDE~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~ 275 (441)
..++++||...+.....+.+..++++...+ .+|+++++
T Consensus 108 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 108 HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp CEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESC
T ss_pred ceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 468999997667766777888888887666 44444444
No 278
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.47 E-value=0.0015 Score=57.73 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+.++.|+|++||||||+++.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999886
No 279
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.46 E-value=0.0012 Score=66.04 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=31.9
Q ss_pred CCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 125 DASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 125 ~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+..|.+++|+|++|+|||||++.|+|.-......| +.-.+|..|.+.+++
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p-~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFP-FCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCC-ccccCceeEEEEECC
Confidence 357789999999999999999999998632111111 112456666666665
No 280
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.46 E-value=0.0027 Score=61.36 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.4
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHH-HcCCccEEEecc
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAA-KLGWKPTFVDLD 166 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~-~~g~~~~~vDld 166 (441)
.+.-+.|.||.|+|||+|++.|++.+. +.|+++.|++.+
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 367899999999999999999999998 888888887653
No 281
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.45 E-value=0.0019 Score=57.32 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++.+++|+|+.||||||+++.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999875
No 282
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.44 E-value=0.0033 Score=61.56 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=40.2
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG 170 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G 170 (441)
+.+|+.+.|.|++|+|||||+..++..+...|.+++|+.+.-..-
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ 87 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAE 87 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHH
Confidence 689999999999999999999999998888999999998875543
No 283
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.44 E-value=0.002 Score=60.42 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=36.6
Q ss_pred CCCCEEEEEC-CCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCc
Q 013511 127 SQGPRVIVVG-PTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGA 171 (441)
Q Consensus 127 ~~G~~v~IvG-pnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~ 171 (441)
..+.+++|.+ .-|+||||++-.|+..+. .|++|++||+||..+.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~ 69 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASI 69 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCH
Confidence 5567888866 567999999999998887 8999999999997543
No 284
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.43 E-value=0.0014 Score=57.51 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=21.1
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+++|+|++|+|||||++.|++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 285
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.43 E-value=0.0032 Score=56.57 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=26.7
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCc
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWK 159 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~ 159 (441)
.+|.+++|+|+.||||||+++.|+...-..+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~ 40 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVE 40 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 568899999999999999999999863333333
No 286
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.0011 Score=64.80 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.9
Q ss_pred CCCCE--EEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPR--VIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~--v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..|++ +++.||+|+||||+++++++.
T Consensus 42 ~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 42 DEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34444 999999999999999999998
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.43 E-value=0.0018 Score=57.08 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999876
No 288
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.42 E-value=0.0021 Score=57.43 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+|.+++|+|+.||||||+++.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999886
No 289
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.42 E-value=0.00065 Score=70.58 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=27.1
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++++.+| +.+|+|+||||||||+.+|..+
T Consensus 54 ~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 54 LELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred EEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 66777888 9999999999999999999877
No 290
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.42 E-value=0.0017 Score=60.94 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+||+|||||||.+.|+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999875
No 291
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.41 E-value=0.0011 Score=65.70 Aligned_cols=49 Identities=27% Similarity=0.281 Sum_probs=30.0
Q ss_pred CCC-EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 128 QGP-RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 128 ~G~-~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.|- +++|+|++|||||||++.|+|.-..... -.+.-.|+..+.+.++|.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~-~~~~T~d~~~~~i~~~g~ 226 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDT-KLFTTMSPKRYAIPINNR 226 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccC-CcccccCCEEEEEEECCE
Confidence 344 4999999999999999999986321111 112334566777777774
No 292
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.41 E-value=0.0037 Score=60.61 Aligned_cols=46 Identities=24% Similarity=0.152 Sum_probs=39.5
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCc
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGA 171 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~ 171 (441)
+..-.+++|.|.=|.||||..--|+-.+.+.|++|++||+||....
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s 90 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDS 90 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCT
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcc
Confidence 4555799999999999999999999888899999999999996443
No 293
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.40 E-value=0.0018 Score=56.42 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.9
Q ss_pred EEEEECCCCCChhHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLS 151 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g 151 (441)
+++|+|++||||||+++.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999987
No 294
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.39 E-value=0.002 Score=57.35 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.||||||+++.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999987
No 295
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.37 E-value=0.0013 Score=68.36 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=46.6
Q ss_pred ccCcccee------------eeEEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 231 NGNAESRA------------AGMVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 231 s~g~~~r~------------~~lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
|+|++||+ .++|+|| +++||+.....+.++|+++.. .+||++||+ +..+ ..||++.++.
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~-----~~~~-~~~d~~~~~~ 471 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHL-----AQIA-ARAHHHYKVE 471 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCC-----HHHH-HHSSEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecC-----HHHH-HhCCEEEEEe
Confidence 77776543 5699999 999999999999999988753 489999999 4433 3489988884
No 296
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.35 E-value=0.0035 Score=60.94 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=38.0
Q ss_pred CCC-C-EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 127 SQG-P-RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 127 ~~G-~-~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
.+| . ++...|.-|+||||++-.|+-.+.+.|+++++||.|| ++.+
T Consensus 10 ~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l 56 (324)
T 3zq6_A 10 NKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSL 56 (324)
T ss_dssp BTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCH
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCH
Confidence 456 4 4556679999999999999999999999999999999 6654
No 297
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.34 E-value=0.0029 Score=61.20 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=33.5
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHc--CCccEEEecc
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKL--GWKPTFVDLD 166 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~--g~~~~~vDld 166 (441)
+.+| ++.|.||+|+|||||+-.++.-+.+. |.+++|+|..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 5789 99999999999999977766666665 7899998864
No 298
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.33 E-value=0.0022 Score=59.48 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
...+++|.||+||||||+++.|+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999865
No 299
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.32 E-value=0.0029 Score=61.95 Aligned_cols=39 Identities=21% Similarity=0.414 Sum_probs=31.6
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHc---CCccEEEec
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKL---GWKPTFVDL 165 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~---g~~~~~vDl 165 (441)
..+..++|.||+|+|||||++.+++.+.+. +..+++++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 567799999999999999999999986554 555666664
No 300
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.32 E-value=0.0021 Score=59.99 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=20.9
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-++|+||+|+|||||++.|++.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999998
No 301
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.30 E-value=0.0018 Score=65.81 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=21.6
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+++|+|++|||||||++.|+|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999986
No 302
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.30 E-value=0.0014 Score=57.61 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|++|+|||||++.|++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 303
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.30 E-value=0.017 Score=51.82 Aligned_cols=144 Identities=18% Similarity=0.168 Sum_probs=77.4
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC---CCcccCCceeeeeeccCcCCCCCCCCcccceEEEecc
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG---QGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGH 205 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~---~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 205 (441)
...+.|.++||.||||.+--++=.|+..|++|+++-...+ .|+..+ .. .+ ++.+......|. .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~--------l~-~L----~v~~~~~g~gf~-~ 93 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNL--------LE-PH----GVEFQVMATGFT-W 93 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHH--------HG-GG----TCEEEECCTTCC-C
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHH--------HH-hC----CcEEEEcccccc-c
Confidence 3478888889999999999999999999999999866553 222111 00 00 010000000011 1
Q ss_pred cCccCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeC-CC--CCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHH
Q 013511 206 ATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINT-MG--WIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSML 281 (441)
Q Consensus 206 ~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~--~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l 281 (441)
.+ +...--........+.....+..+ +..++|||| .. .++-...+.+.+++..--. ..||++++.. ...|
T Consensus 94 ~~--~~~~~~~~~a~~~l~~a~~~l~~~---~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a-p~~l 167 (196)
T 1g5t_A 94 ET--QNREADTAACMAVWQHGKRMLADP---LLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC-HRDI 167 (196)
T ss_dssp CG--GGHHHHHHHHHHHHHHHHHHTTCT---TCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC-CHHH
T ss_pred CC--CCcHHHHHHHHHHHHHHHHHHhcC---CCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC-cHHH
Confidence 11 111111112223333444445443 357899999 32 2333455677788875333 3888888763 1222
Q ss_pred HHHhcCCCCeEEEE
Q 013511 282 RDVLKNRPNVDVVK 295 (441)
Q Consensus 282 ~~~~~~~~~v~vl~ 295 (441)
...+|-|.=|+
T Consensus 168 ---~e~AD~VTem~ 178 (196)
T 1g5t_A 168 ---LDLADTVSELR 178 (196)
T ss_dssp ---HHHCSEEEECC
T ss_pred ---HHhCcceeeec
Confidence 23457766663
No 304
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.29 E-value=0.0029 Score=60.49 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=27.5
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL 165 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl 165 (441)
...+++.||+|+||||+++.|++...+.+....++|.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~ 83 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 83 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence 3579999999999999999999985443333334443
No 305
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.29 E-value=0.0021 Score=58.12 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+.+|+|||||||||++.+|.-.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 49999999999999999998644
No 306
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.29 E-value=0.0034 Score=56.17 Aligned_cols=26 Identities=27% Similarity=0.320 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+..+++|+|+.||||||+++.|+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999875
No 307
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.29 E-value=0.0043 Score=55.16 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEE
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFV 163 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~v 163 (441)
+|.++.+.||.||||||++.-++..+...|++++++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 478999999999999999854554445677787775
No 308
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.27 E-value=0.0021 Score=56.77 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.+++|+|+.||||||+++.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 309
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.24 E-value=0.003 Score=57.46 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++|.+++|+|+.||||||+++.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45779999999999999999999886
No 310
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.23 E-value=0.0035 Score=53.09 Aligned_cols=36 Identities=6% Similarity=-0.060 Sum_probs=25.6
Q ss_pred eeEEEeCCCCCCchhHHHHHHHHHHcC-CC-EEEEeCC
Q 013511 239 AGMVINTMGWIEGVGYELLLHAIDTFK-AN-VVLVLGQ 274 (441)
Q Consensus 239 ~~lIlDE~~~lD~~~~~~l~~li~~~~-~~-~Vivi~h 274 (441)
..+++||...+++..+..+.+++++.. .+ .+|.+++
T Consensus 77 ~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 77 GVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 468999988888877788888887754 33 4454444
No 311
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.23 E-value=0.0058 Score=60.55 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=40.3
Q ss_pred CCCCCCEEEEEC-CCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 125 DASQGPRVIVVG-PTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 125 ~i~~G~~v~IvG-pnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
.-.++.+++|.+ .-|+||||++-.|+-.+.+.|+++++||+| .+|.+
T Consensus 139 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D-~~~~l 186 (373)
T 3fkq_A 139 ENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE-QCGTT 186 (373)
T ss_dssp CTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC-TTCCH
T ss_pred cCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC-CCCCH
Confidence 345678899986 788999999999999999999999999999 66654
No 312
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.22 E-value=0.024 Score=57.58 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=21.8
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.-++|.||+|+|||||++.|++.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999998
No 313
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.22 E-value=0.0027 Score=57.02 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
...+++|+|+.||||||+++.|+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999886
No 314
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.22 E-value=0.0024 Score=57.03 Aligned_cols=21 Identities=38% Similarity=0.732 Sum_probs=19.3
Q ss_pred EEEECCCCCChhHHHHHHHHH
Q 013511 132 VIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 132 v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.|+||+|||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999876
No 315
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.20 E-value=0.0036 Score=54.47 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWA 153 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a 153 (441)
.+..++|.||.|+|||||++.++..+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999984
No 316
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.20 E-value=0.0025 Score=56.80 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+..+++|+|++||||||+++.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3458999999999999999999874
No 317
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.18 E-value=0.0029 Score=56.16 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+.+++|+|+.||||||+++.|+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999986
No 318
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.18 E-value=0.0025 Score=55.80 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=18.2
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++.++.|+|+.||||||+++.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999865
No 319
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.16 E-value=0.0023 Score=56.35 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++++|+|+.||||||+++.|+..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999885
No 320
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.16 E-value=0.0054 Score=56.37 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=35.7
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHH-cCCccEEEeccCC
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAK-LGWKPTFVDLDIG 168 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~-~g~~~~~vDldp~ 168 (441)
.+|.++.+.|+.||||||+++.|....-. .|+++.++--.|+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 57889999999999999999999999777 7888776445565
No 321
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.15 E-value=0.0069 Score=59.34 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.8
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+|..++|.||.|+|||||++.++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999998
No 322
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.12 E-value=0.0029 Score=56.02 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=20.9
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++..+.. +++|+|++|+|||||++.|.+-
T Consensus 17 ~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 17 LGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred hhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 55544444 8999999999999999999873
No 323
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.11 E-value=0.0013 Score=65.02 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=31.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+.+.|+...|+++. ++++ .++ .++|+|++|+|||||++.|.+.
T Consensus 17 ~v~~~~l~~~~~~k~--~~~~--~~~------~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 17 YVGFANLPNQVHRKS--VKKG--FEF------TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ----CCHHHHHHTHH--HHHC--CEE------CEEECCCTTSCHHHHHHHHTTC
T ss_pred eEEeccchHHhCCee--ecCC--CCE------EEEEEcCCCCCHHHHHHHHhCC
Confidence 467788998887653 3433 444 3599999999999999999775
No 324
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.10 E-value=0.0076 Score=58.97 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=27.5
Q ss_pred eeeEEEeCCCCCCchhHHHHHHHHHHcCCCE-EEEeCCc
Q 013511 238 AAGMVINTMGWIEGVGYELLLHAIDTFKANV-VLVLGQE 275 (441)
Q Consensus 238 ~~~lIlDE~~~lD~~~~~~l~~li~~~~~~~-Vivi~h~ 275 (441)
..++|+||..+++....+.+.+.+++...++ +|+++++
T Consensus 120 ~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp SEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred eEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 3579999987888878888888888765554 4444443
No 325
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.09 E-value=0.0037 Score=61.73 Aligned_cols=47 Identities=28% Similarity=0.427 Sum_probs=30.6
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
|..++|+|.+|+|||||++.|++--......| +.-.+|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p-~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYP-FCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------C-CCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCC-CceECceEEEEecCC
Confidence 45899999999999999999998411100000 112466677777665
No 326
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.08 E-value=0.0046 Score=63.36 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=34.4
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+-++.++...+.... .+++ +++...+| ++|+||+|+|||||+|.|++.
T Consensus 25 ~~~l~e~v~~l~~~~--~~~~--~g~~~p~g--vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 25 IEELKEVVEFLKDPS--KFNR--IGARMPKG--ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HHHHHHHHHHHHCTH--HHHT--TTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhChH--HHhh--cCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 456667666565432 2222 55555666 899999999999999999997
No 327
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.07 E-value=0.0065 Score=61.70 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=37.3
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHH-cCCccEEEeccCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAK-LGWKPTFVDLDIG 168 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~-~g~~~~~vDldp~ 168 (441)
+.+|+.+.|.|++|+|||||+..++..+.. .|.+++|+++.-.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~ 240 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP 240 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 689999999999999999999988887765 5888999888643
No 328
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.07 E-value=0.0033 Score=68.84 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=27.6
Q ss_pred CCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 123 DSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 123 sl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++.+.+|+.++|+||+|||||||+|+|++.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 456789999999999999999999999997
No 329
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.08 Score=51.17 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWA 153 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a 153 (441)
.++..+.|.||.|+|||++++.++..+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999999984
No 330
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.05 E-value=0.0058 Score=60.06 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=36.9
Q ss_pred CCCE-EEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 128 QGPR-VIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 128 ~G~~-v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
++.+ +.+.|.-|+||||++-.|+-.+.+.|+++++||.|| ++.+
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l 68 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP-AHSL 68 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT-TCHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC-CCCH
Confidence 3444 455578999999999999999999999999999999 5544
No 331
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.04 E-value=0.0045 Score=55.33 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+-+++|+|+.||||||+++.|+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999886
No 332
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.03 E-value=0.0039 Score=59.34 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=24.9
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
.+++|+|+.||||||+++.|+.+ |+ .++|.|
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~l----g~--~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKNL----GA--YIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH----TC--EEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC----CC--cEEehh
Confidence 47999999999999999999853 43 456664
No 333
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.03 E-value=0.0075 Score=54.99 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=31.5
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEe
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVD 164 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vD 164 (441)
-+|.++.+.|+.||||||+++.|+...-..|+.+....
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 46889999999999999999999998766777765543
No 334
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.02 E-value=0.0034 Score=57.41 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++.+++|+|+.||||||+++.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999876
No 335
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.02 E-value=0.008 Score=55.72 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCc
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWK 159 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~ 159 (441)
.+|.++.|.|+.||||||+++.|+...-..|.+
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 468899999999999999999999987667766
No 336
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.01 E-value=0.0037 Score=56.53 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.||||||+++.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999775
No 337
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.00 E-value=0.0042 Score=54.64 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+++|+|+.||||||+++.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 338
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.00 E-value=0.0086 Score=54.59 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=27.9
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCC
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGW 158 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~ 158 (441)
+|.++.+.|+.||||||+++.|....-..|.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4789999999999999999999999777776
No 339
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.99 E-value=0.0032 Score=58.06 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.5
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+++|+|++|+|||||++.|+|.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999999985
No 340
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.98 E-value=0.0041 Score=59.65 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=25.1
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.++..++|.||+|+|||||++.|++.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 467889999999999999999999998
No 341
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.97 E-value=0.0049 Score=62.28 Aligned_cols=54 Identities=9% Similarity=0.048 Sum_probs=43.1
Q ss_pred eeeEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 238 AAGMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 238 ~~~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
..++|+|| ++.||+..++.+.++++++.. ..+|+++|+ .. ....||++.++...
T Consensus 356 ~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~-----~~-~~~~~d~~~~~~~~ 412 (430)
T 1w1w_A 356 SPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK-----NT-MFEKSDALVGVYRQ 412 (430)
T ss_dssp CSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSC-----HH-HHTTCSEEEEEEEE
T ss_pred CCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECC-----HH-HHHhCCEEEEEEEe
Confidence 34699999 999999999999999998863 388889998 22 23468998888654
No 342
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.96 E-value=0.0044 Score=55.40 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|.|++||||||+++.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999985
No 343
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.96 E-value=0.0057 Score=55.48 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=31.4
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG 168 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~ 168 (441)
-.+++|+|..|+|||||++.|++..... .++..++.|++
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 4689999999999999999998875443 66777777765
No 344
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.96 E-value=0.0066 Score=55.95 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=28.3
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHc----CCccEEE
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKL----GWKPTFV 163 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~----g~~~~~v 163 (441)
.+|.++.|.|+.||||||+++.|+...-.. |+++.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 578999999999999999999999986555 7666544
No 345
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.92 E-value=0.004 Score=56.35 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.||||||+++.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 346
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.91 E-value=0.0045 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.|+|||||++.|.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999999874
No 347
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.90 E-value=0.0041 Score=52.68 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.8
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++++|+|+.|+|||||++.|.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999874
No 348
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.90 E-value=0.0041 Score=56.61 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+.+++|+|+.||||||+++.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999986
No 349
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.89 E-value=0.0033 Score=60.85 Aligned_cols=42 Identities=17% Similarity=0.118 Sum_probs=32.8
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHH------------HcC----CccEEEeccC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAA------------KLG----WKPTFVDLDI 167 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~------------~~g----~~~~~vDldp 167 (441)
+.+|.++.|.|++|+|||||+..++.-+. +.| .+++|+|..-
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~ 152 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG 152 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence 57899999999999999999998886532 234 5777777653
No 350
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.0059 Score=53.70 Aligned_cols=26 Identities=38% Similarity=0.668 Sum_probs=23.0
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+...++|+|+.|||||||++.|.+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999885
No 351
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.85 E-value=0.0046 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.1
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+++|+|+.||||||+++.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999985
No 352
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.85 E-value=0.0064 Score=60.22 Aligned_cols=51 Identities=6% Similarity=0.087 Sum_probs=40.6
Q ss_pred eeeEEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 238 AAGMVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 238 ~~~lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
..++|+|| +++||+..++.+.+.++++... .|+++||+ .. ....++++.++
T Consensus 306 ~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~-----~~-~~~~~d~~~~l 358 (371)
T 3auy_A 306 VECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHH-----RE-LEDVADVIINV 358 (371)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESC-----GG-GGGGCSEEEEE
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEECh-----HH-HHhhCCEEEEE
Confidence 35699999 9999999999999999997543 78889998 32 23567887666
No 353
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.84 E-value=0.0055 Score=52.90 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+..+++|+|+.|+|||||++.|.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56779999999999999999999874
No 354
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.82 E-value=0.0089 Score=60.74 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=39.9
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCc
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGA 171 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~ 171 (441)
+.+|+.+.|.|++|+|||||+.-++..+.+.|.+++|+.+.-...+
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~q 239 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKE 239 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHH
Confidence 6899999999999999999998888887777999999988765443
No 355
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.81 E-value=0.0057 Score=52.75 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.6
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|.|+.||||||+++.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 356
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=95.81 E-value=0.0068 Score=60.51 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=36.9
Q ss_pred CCCCEEEEE-CCCCCChhHHHHHHHHHHH------HcCCccEEEeccCCCCcc
Q 013511 127 SQGPRVIVV-GPTDSGKSTLSRMLLSWAA------KLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 127 ~~G~~v~Iv-GpnGsGKSTLlr~L~g~a~------~~g~~~~~vDldp~~G~i 172 (441)
..+.+++|. |.-|+||||++-.|+..+. +.|++|++||+|| +|.+
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~-q~~l 157 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP-QSSA 157 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT-TCHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC-CCCh
Confidence 456678887 5678999999999998776 4799999999999 5654
No 357
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.80 E-value=0.01 Score=53.67 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=33.1
Q ss_pred EEEEE-CCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 131 RVIVV-GPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 131 ~v~Iv-GpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
+++|. +.-|+||||++-.|+..+.+.| ++++||+||..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~ 40 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNR 40 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCC
Confidence 45665 5679999999999999999999 99999999964
No 358
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.79 E-value=0.0049 Score=57.24 Aligned_cols=26 Identities=35% Similarity=0.319 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++.+++|+||.||||||+++.|+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999875
No 359
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.78 E-value=0.0056 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|+.|+|||||++.|.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998874
No 360
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.77 E-value=0.0057 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.6
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|+.|+|||||++.|.+-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999875
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.76 E-value=0.0059 Score=55.88 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.3
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+..++.|+||.||||+|.++.|+..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 466778999999999999999999986
No 362
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.76 E-value=0.0058 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.5
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999885
No 363
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.76 E-value=0.048 Score=49.61 Aligned_cols=36 Identities=28% Similarity=0.111 Sum_probs=28.6
Q ss_pred CCCCEEEEECCCCCChhH-HHHHHHHHHHHcCCccEEE
Q 013511 127 SQGPRVIVVGPTDSGKST-LSRMLLSWAAKLGWKPTFV 163 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKST-Llr~L~g~a~~~g~~~~~v 163 (441)
..|.+..|.|+-|||||| |++.+.++ ...|.+++++
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~-~~~g~kvli~ 62 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRG-IYAKQKVVVF 62 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH-HHcCCceEEE
Confidence 568999999999999999 88887666 4456777665
No 364
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.75 E-value=0.0058 Score=51.88 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|+.|+|||||++.|.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999999874
No 365
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.74 E-value=0.011 Score=62.13 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=39.7
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
....++.+.|..|+||||+.-.|+-.+.+.|+++++||.|| ++.+
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~-~~~l 50 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP-ASNV 50 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT-TCCH
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC-CcCH
Confidence 44568888999999999999999999999999999999999 4654
No 366
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.74 E-value=0.0084 Score=58.58 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=26.0
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI 167 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp 167 (441)
.+++|+||+|||||||++.|+... ...+++.|-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l-----~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF-----NGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc-----CCceecccc
Confidence 489999999999999999998861 245566653
No 367
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.73 E-value=0.0054 Score=51.87 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++++|+.|+|||||++.|.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 368
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.72 E-value=0.02 Score=63.08 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWA 153 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a 153 (441)
..-++|+||+|+||||+++.|++..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999984
No 369
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.72 E-value=0.0061 Score=52.12 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.|+|||||++.|.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999874
No 370
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.71 E-value=0.0061 Score=51.94 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|+.|+|||||++.|.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 371
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.71 E-value=0.0061 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|+.|+|||||++.|.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 372
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.68 E-value=0.0058 Score=52.17 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|+.|+|||||++.|.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 373
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.67 E-value=0.0065 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.9
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|||||||++.|.+-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999874
No 374
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.65 E-value=0.0046 Score=58.27 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.2
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..++|+|++|||||||++.|+|.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999886
No 375
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.65 E-value=0.0068 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.7
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999999874
No 376
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.64 E-value=0.0057 Score=52.24 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.1
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|+.|+|||||++.|.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999873
No 377
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.63 E-value=0.0095 Score=57.80 Aligned_cols=32 Identities=31% Similarity=0.605 Sum_probs=25.4
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
..++|+||+|||||||.+.|+.. . ...++|.|
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~---l--~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA---L--PCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH---S--CEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHH---c--CCcEEecc
Confidence 47999999999999999999886 2 23455555
No 378
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.60 E-value=0.0065 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.2
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999885
No 379
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.58 E-value=0.007 Score=54.97 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+|.+++|+|+.||||||+++.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999886
No 380
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.58 E-value=0.0065 Score=57.96 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=21.3
Q ss_pred EEEEECCCCCChhHHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWA 153 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a 153 (441)
.+++.||.|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 49999999999999999999984
No 381
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=95.58 E-value=0.007 Score=60.57 Aligned_cols=46 Identities=20% Similarity=0.108 Sum_probs=30.4
Q ss_pred CCCCEEEEE-CCCCCChhHHHHHHHHHHH------HcCCccEEEeccCCCCccc
Q 013511 127 SQGPRVIVV-GPTDSGKSTLSRMLLSWAA------KLGWKPTFVDLDIGQGAIT 173 (441)
Q Consensus 127 ~~G~~v~Iv-GpnGsGKSTLlr~L~g~a~------~~g~~~~~vDldp~~G~i~ 173 (441)
..+.+++|+ |.-|+||||++-.|+..+. +.|+++++||+|| +|.+.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~-~~~l~ 161 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDP-QASST 161 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESS-SSGGG
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC-CCChh
Confidence 456678887 5778999999999998776 6899999999999 55543
No 382
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.56 E-value=0.0033 Score=56.11 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=23.8
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHH
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLS 151 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g 151 (441)
+++..++. .++|+|++|+|||||++.|.+
T Consensus 19 ~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 19 LGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred hhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 45555555 789999999999999999875
No 383
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.56 E-value=0.0076 Score=51.34 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=20.3
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|+.|+|||||++.|.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 384
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.55 E-value=0.0075 Score=53.01 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.-+++|+|+.|+|||||++.|++-
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999985
No 385
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.54 E-value=0.006 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.6
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 37999999999999999998864
No 386
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.54 E-value=0.0075 Score=52.87 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.|+|||||++.|.|.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999988885
No 387
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.54 E-value=0.0077 Score=52.43 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 388
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.53 E-value=0.011 Score=57.60 Aligned_cols=40 Identities=25% Similarity=0.190 Sum_probs=36.6
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
.++.+.|.-|+||||+.-.|+-.+.+.|+++++||.||..
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 5777889999999999999999999999999999999864
No 389
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=95.50 E-value=0.013 Score=57.00 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=36.3
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCc
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGA 171 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~ 171 (441)
.++.+-|.-|+||||+.-.|+-.+.+.|+++++||.||. +.
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~-~~ 60 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA-HN 60 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT-CH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC-cC
Confidence 356677888999999999999999999999999999997 54
No 390
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.50 E-value=0.0082 Score=54.82 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.||||||+++.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
No 391
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.49 E-value=0.008 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=21.0
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 37999999999999999999884
No 392
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.49 E-value=0.008 Score=52.46 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.9
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999874
No 393
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.49 E-value=0.0083 Score=50.99 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.3
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 394
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.47 E-value=0.0084 Score=51.27 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.-+++|+|+.|+|||||++.|.+-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999999763
No 395
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.47 E-value=0.0064 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999753
No 396
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=95.47 E-value=0.0086 Score=59.08 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=35.0
Q ss_pred EEEEE-CCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCc
Q 013511 131 RVIVV-GPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGA 171 (441)
Q Consensus 131 ~v~Iv-GpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~ 171 (441)
+++|. +.-|+||||++-.|+-.+.+.|++|++||+||..+.
T Consensus 3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~ 44 (361)
T 3pg5_A 3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNA 44 (361)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCCh
Confidence 45555 567899999999999999999999999999998543
No 397
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.46 E-value=0.0085 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.1
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999874
No 398
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.45 E-value=0.0045 Score=52.80 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.9
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.|+|||||++.|.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 7899999999999999988763
No 399
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.45 E-value=0.029 Score=60.89 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=26.5
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEe
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVD 164 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vD 164 (441)
.++++||+|+|||++++.|+..+.+.+...+.+|
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRID 556 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence 5999999999999999999999544444444444
No 400
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.45 E-value=0.016 Score=51.88 Aligned_cols=38 Identities=26% Similarity=0.177 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEe
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVD 164 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vD 164 (441)
.+|.+..++||.||||||.+--++..+...|++++++-
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 56889999999999999988777777778899999874
No 401
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.43 E-value=0.01 Score=53.63 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.+++|+|+.||||||+++.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999885
No 402
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.43 E-value=0.0087 Score=51.92 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.0
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-+++|+|+.|+|||||++.|.+-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 47999999999999999999874
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.42 E-value=0.0072 Score=54.64 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.||||||+++.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 404
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.42 E-value=0.011 Score=54.26 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..+.+++|+|+.||||||+++.|+..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999986
No 405
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.42 E-value=0.0079 Score=52.88 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.-..++|+|+.|+|||||++.|.+-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999874
No 406
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.42 E-value=0.01 Score=62.00 Aligned_cols=40 Identities=35% Similarity=0.396 Sum_probs=33.6
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
+.|.++.++|+.||||||+++.|....-..|+.+.++|.|
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 4467899999999999999999998766677777777755
No 407
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.42 E-value=0.0081 Score=51.72 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.7
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|++-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999999864
No 408
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.38 E-value=0.0092 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.9
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|++-
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 37999999999999999999874
No 409
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.0093 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.9
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 37999999999999999999874
No 410
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.37 E-value=0.01 Score=56.41 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++.-++|.||+|+|||||++.|++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4678999999999999999999997
No 411
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.37 E-value=0.012 Score=61.84 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcC-CccEEEecc
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLG-WKPTFVDLD 166 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g-~~~~~vDld 166 (441)
++|.++.|.|.+||||||+++.|...+-..| +...++|.|
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 5677899999999999999999998865556 666677643
No 412
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.37 E-value=0.011 Score=62.54 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=31.5
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEe
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVD 164 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vD 164 (441)
+|.++.|+|.+||||||+++.|+..+...|+..+.+|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 6778999999999999999999998666677766665
No 413
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=95.36 E-value=0.013 Score=59.18 Aligned_cols=38 Identities=32% Similarity=0.305 Sum_probs=33.8
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
..-++|+|++||||||+++.|+..+++.|.+++++|..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45899999999999999999998889999999998754
No 414
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.35 E-value=0.0096 Score=52.09 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.-.+++|+|+.|+|||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999875
No 415
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.35 E-value=0.0085 Score=51.67 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.7
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 37999999999999999999864
No 416
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.34 E-value=0.0059 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.6
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-+++|+|+.|+|||||++.|.+-
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998763
No 417
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.34 E-value=0.016 Score=56.80 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=30.5
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHc--------CCccEEEec
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKL--------GWKPTFVDL 165 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~--------g~~~~~vDl 165 (441)
..+..++|.||.|+|||||++.+++.+.+. ++..+++|.
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 345689999999999999999999986554 555555554
No 418
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.33 E-value=0.01 Score=51.36 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 37999999999999999999874
No 419
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.30 E-value=0.012 Score=50.91 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+--.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998864
No 420
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.30 E-value=0.0092 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.0
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999875
No 421
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.30 E-value=0.012 Score=52.85 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.-..++|+|+.|+|||||++.|.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999885
No 422
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.29 E-value=0.017 Score=56.79 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=36.5
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHH--HcCCccEEEeccCCC
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAA--KLGWKPTFVDLDIGQ 169 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~--~~g~~~~~vDldp~~ 169 (441)
.++.+.|.-|+||||++-.|+-.+. +.|+++++||.||..
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~ 60 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAH 60 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCC
Confidence 5888889999999999999999888 899999999999853
No 423
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.27 E-value=0.01 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.8
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-+++|+|+.|+|||||++.|.+-
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999999864
No 424
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.27 E-value=0.011 Score=52.05 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.|+|||||++.+++-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999877764
No 425
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.27 E-value=0.018 Score=54.79 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=24.8
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAK 155 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~ 155 (441)
..+.-++|.||.|+|||||++.+++.+-.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44567999999999999999999998544
No 426
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.25 E-value=0.0097 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.8
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-+++|+|+.|+|||||++.|.+-
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999874
No 427
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.24 E-value=0.011 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.|+|||||++.|.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7999999999999999999874
No 428
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.24 E-value=0.011 Score=51.89 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=20.6
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|+.|+|||||++.|.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999999875
No 429
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.22 E-value=0.0073 Score=52.72 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|+.|+|||||++.|.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999998874
No 430
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.21 E-value=0.01 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.0
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-+++|+|+.|+|||||++.|.+-
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 37999999999999999999874
No 431
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.20 E-value=0.006 Score=53.42 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..-.++|+|++|+|||||++.|.+-
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999988763
No 432
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.20 E-value=0.0091 Score=55.53 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=21.2
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-+|+|+|.+|+|||||++.|+|.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999885
No 433
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.19 E-value=0.011 Score=52.36 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.0
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999875
No 434
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.19 E-value=0.012 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|+.|+|||||++.|.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999998864
No 435
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.17 E-value=0.012 Score=54.97 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWA 153 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a 153 (441)
+.-++|.||+|+|||+|++.|+...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4568899999999999999999973
No 436
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.17 E-value=0.0061 Score=59.07 Aligned_cols=38 Identities=32% Similarity=0.360 Sum_probs=31.7
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
+.+|..+.|.||.|+|||||+..++.. .|.+++|++++
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~ 157 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVR 157 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEE
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEec
Confidence 456778899999999999999999764 67778888873
No 437
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.15 E-value=0.011 Score=52.06 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=20.9
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.|+|||||++.|.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 7999999999999999999986
No 438
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.14 E-value=0.012 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.8
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998874
No 439
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.14 E-value=0.071 Score=51.15 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=27.5
Q ss_pred eeeeEEEeCCCCCC-chhHHHHHHHHHHcCCC-EEEEeCCc
Q 013511 237 RAAGMVINTMGWIE-GVGYELLLHAIDTFKAN-VVLVLGQE 275 (441)
Q Consensus 237 r~~~lIlDE~~~lD-~~~~~~l~~li~~~~~~-~Vivi~h~ 275 (441)
+..++++||...+. ....+.+...++....+ .+|++++.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 45689999977776 66678888888887555 45555544
No 440
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.14 E-value=0.012 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.0
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999874
No 441
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.14 E-value=0.011 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++.|+||.||||+|.++.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999986
No 442
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.13 E-value=0.014 Score=68.97 Aligned_cols=43 Identities=30% Similarity=0.440 Sum_probs=39.8
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG 168 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~ 168 (441)
+.+|..+.|.||.|+|||||+..++.-+.+.|++++|+|.+-.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 5689999999999999999999999999999999999998744
No 443
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.11 E-value=0.014 Score=60.19 Aligned_cols=43 Identities=21% Similarity=0.104 Sum_probs=37.0
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHc-CCccEEEeccCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKL-GWKPTFVDLDIG 168 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~-g~~~~~vDldp~ 168 (441)
+.+|+.+.|.|++|+|||||+.-++-.+.+. |.+++|+++.-.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 6799999999999999999998887766665 889999988654
No 444
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.11 E-value=0.013 Score=51.62 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|+.|+|||||++.|.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999999874
No 445
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.09 E-value=0.012 Score=51.87 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.-.++|+|+.|+|||||++.|.+-
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 347999999999999999999873
No 446
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.08 E-value=0.0098 Score=55.73 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.1
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++++|+|..|||||||++.|.|.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999875
No 447
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.07 E-value=0.012 Score=52.38 Aligned_cols=26 Identities=19% Similarity=0.338 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+.-+++|+|+.|+|||||++.|.+-
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 34458999999999999999999985
No 448
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.07 E-value=0.012 Score=51.01 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.6
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+++|+|+.|+|||||++.|.+-
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 37999999999999999999853
No 449
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.06 E-value=0.0097 Score=56.34 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=21.1
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+++|+|++|+|||||++.|+|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 37999999999999999999984
No 450
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.06 E-value=0.024 Score=54.13 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
...+++.||+|+|||+|++.|++.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346778899999999999999998
No 451
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.05 E-value=0.013 Score=51.38 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.-.++|+|+.|+|||||++.|.+-
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3458999999999999999999874
No 452
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.05 E-value=0.026 Score=52.15 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
....-++|.||+|+|||||++.|++.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44567899999999999999999997
No 453
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.04 E-value=0.015 Score=58.48 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+..+++|+|++||||||+++.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999999998865
No 454
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.03 E-value=0.014 Score=51.19 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-+++|+|+.|+|||||++.|.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999999875
No 455
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.03 E-value=0.012 Score=52.99 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..|..++|+||+|||||||+..|+..
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35778999999999999999888754
No 456
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.03 E-value=0.012 Score=57.34 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=27.7
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG 168 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~ 168 (441)
.++..++|+||+|||||||.+.|+.. . ..-+||.|--
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~---l--~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAH---F--PLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTT---S--CEEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHH---C--CCcEEccccc
Confidence 35678999999999999999999875 1 2345565543
No 457
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.02 E-value=0.012 Score=55.98 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.7
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++.|+|++||||||+++.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999874
No 458
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.01 E-value=0.032 Score=50.00 Aligned_cols=35 Identities=29% Similarity=0.261 Sum_probs=30.0
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL 165 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl 165 (441)
.+.+=|.-||||||.++.|..++-..|.++.+...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 46788999999999999999998888888776654
No 459
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.98 E-value=0.015 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.-.++|+|+.|+|||||++.|.+-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999874
No 460
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.97 E-value=0.014 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=21.1
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-+++|+|+.|+|||||++.|.+-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 48999999999999999999885
No 461
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.013 Score=52.49 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.8
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 37999999999999999998874
No 462
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.97 E-value=0.014 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.-.++|+|+.|+|||||++.|.+-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3458999999999999999999874
No 463
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.95 E-value=0.015 Score=53.47 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=22.5
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+..|+.++++||+||||||++..++-.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 356899999999999999988776544
No 464
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.92 E-value=0.013 Score=52.04 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=20.7
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999998874
No 465
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.91 E-value=0.015 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.9
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-+++|+|++|+|||||++.+++.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999875
No 466
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.87 E-value=0.014 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.9
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999874
No 467
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.87 E-value=0.016 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 37999999999999999988874
No 468
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.87 E-value=0.011 Score=51.52 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.-.++|+|+.|+|||||++.|.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998864
No 469
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.86 E-value=0.01 Score=58.33 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
....+++|+|++|+|||||++.|++.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999999875
No 470
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.86 E-value=0.014 Score=56.30 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.+++|+||+|||||||++.|+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 458899999999999999999875
No 471
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.85 E-value=0.012 Score=56.37 Aligned_cols=26 Identities=31% Similarity=0.527 Sum_probs=23.4
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
..-++++|+|+.|||||||++.|+|.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 34579999999999999999999986
No 472
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.83 E-value=0.016 Score=51.61 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
...-.++|+|+.|+|||||++.|.+-
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999874
No 473
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.81 E-value=0.021 Score=66.70 Aligned_cols=47 Identities=30% Similarity=0.422 Sum_probs=41.8
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
+.+|+.+.|.||+|+|||||+..++..+.+.|.+++|++..-....+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql 775 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI 775 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHH
Confidence 68999999999999999999999999999999999999987654443
No 474
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.80 E-value=0.015 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.1
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-+++|+|+.|+|||||++.|.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999885
No 475
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.80 E-value=0.0098 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCChhHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLS 151 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g 151 (441)
+.-+++|+|++|+|||||++.|.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999988764
No 476
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.79 E-value=0.016 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
--+++|+|+.|+|||||++.|.+-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 348999999999999999999874
No 477
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.78 E-value=0.013 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCChhHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLS 151 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g 151 (441)
.-.++|+|+.|+|||||++.|.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999885
No 478
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.77 E-value=0.013 Score=50.55 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=20.8
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-+++|+|+.|+|||||++.+++-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999874
No 479
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.73 E-value=0.032 Score=50.39 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=26.3
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEE
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTF 162 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~ 162 (441)
|.+++|=|+-||||||+++.|..++ ..|+++.+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L-~~~~~v~~ 34 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL-VKDYDVIM 34 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH-TTTSCEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH-HCCCCEEE
Confidence 4578899999999999999999985 34555444
No 480
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.72 E-value=0.032 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
...++|+||+|||||||++.|+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 468899999999999999999876
No 481
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.72 E-value=0.012 Score=51.30 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.-+++|+|+.|+|||||++.|.+-
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999874
No 482
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.71 E-value=0.013 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.3
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999999864
No 483
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=94.71 E-value=0.029 Score=55.18 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=35.9
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHH--HcCCccEEEeccCCCCcc
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAA--KLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~--~~g~~~~~vDldp~~G~i 172 (441)
.++..-|.-|.||||+.-.|+-.+. +.|+++++||.||. +.+
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~l 62 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HNL 62 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CCH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CCH
Confidence 3556668889999999999998888 89999999999995 654
No 484
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.66 E-value=0.0094 Score=52.99 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.4
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|++|+|||||++.|++.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999988753
No 485
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.66 E-value=0.015 Score=55.85 Aligned_cols=22 Identities=45% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|.+|+|||||++.|+|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999875
No 486
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.66 E-value=0.019 Score=51.37 Aligned_cols=24 Identities=42% Similarity=0.430 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.+++|+|+.|+|||||++.|.+-
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999875
No 487
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.64 E-value=0.015 Score=51.57 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=25.5
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
+++|+|+.||||||++.-|+. + +.+++|++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~---~-~~~~~yiaT~ 32 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIG---D-APQVLYIATS 32 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHC---S-CSSEEEEECC
T ss_pred CEEEECCCCCcHHHHHHHHHh---c-CCCeEEEecC
Confidence 378999999999999998763 2 6677887763
No 488
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.63 E-value=0.018 Score=51.20 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.4
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999999874
No 489
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.62 E-value=0.017 Score=59.60 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=31.6
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHH-cC-CccEEEeccC
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAK-LG-WKPTFVDLDI 167 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~-~g-~~~~~vDldp 167 (441)
+.|..+.++|.+||||||+.+.|+..+-. .| +.+.|+|.|-
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 56789999999999999999999998543 33 4445666554
No 490
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.62 E-value=0.012 Score=51.21 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=10.0
Q ss_pred CEEEEECCCCCChhHHHHHHHHH
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-.++|+|+.|+|||||++.|.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999998865
No 491
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.61 E-value=0.012 Score=51.98 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|+.|+|||||++.|.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999764
No 492
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.60 E-value=0.015 Score=54.16 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
--+++|+|+.|||||||++.|++.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999875
No 493
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.59 E-value=0.034 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+.-+++.||.|+||||+++.++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999998
No 494
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.56 E-value=0.019 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.6
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|+.|+|||||++.|.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999875
No 495
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.55 E-value=0.015 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+--+++|+|+.|+|||||++.+.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 3458999999999999999987764
No 496
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.55 E-value=0.016 Score=51.94 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=20.2
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|+|+.|+|||||++.|.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999998864
No 497
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.53 E-value=0.012 Score=55.56 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.++|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999998764
No 498
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.53 E-value=0.015 Score=63.65 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=27.0
Q ss_pred CCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 123 DSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 123 sl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++.+.++..+++.||+|+|||||+|+|++.
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 345678889999999999999999999998
No 499
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.53 E-value=0.0092 Score=53.80 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
....+++|+|+.|+|||||++.|++.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34579999999999999999998874
No 500
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.51 E-value=0.01 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.-+++|+|+.|+|||||++.|.+.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998875
Done!