Query 013512
Match_columns 441
No_of_seqs 161 out of 663
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:36:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 8.8E-70 1.9E-74 570.1 35.9 381 39-424 147-573 (577)
2 PF04515 Choline_transpo: Plas 100.0 1.3E-61 2.8E-66 487.9 29.0 302 96-399 2-333 (334)
3 PF10110 GPDPase_memb: Membran 63.3 46 0.001 29.4 8.4 31 288-318 105-135 (149)
4 PF09622 DUF2391: Putative int 52.0 50 0.0011 32.5 7.0 60 5-66 179-238 (267)
5 KOG2611 Neurochondrin/leucine- 37.8 47 0.001 35.3 4.6 40 376-418 77-116 (698)
6 PF15176 LRR19-TM: Leucine-ric 32.4 87 0.0019 26.1 4.4 27 38-64 14-40 (102)
7 PF15186 TEX13: Testis-express 25.7 22 0.00048 31.6 -0.1 39 396-438 24-63 (152)
8 PTZ00370 STEVOR; Provisional 24.2 1.2E+02 0.0027 30.0 4.7 25 95-119 259-283 (296)
9 TIGR01478 STEVOR variant surfa 24.1 1.2E+02 0.0027 30.0 4.6 24 95-118 263-286 (295)
10 PF06570 DUF1129: Protein of u 20.5 6.9E+02 0.015 23.2 9.5 22 98-119 181-202 (206)
11 PF03788 LrgA: LrgA family; I 20.5 2.2E+02 0.0048 23.3 4.9 32 113-146 30-61 (96)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=8.8e-70 Score=570.06 Aligned_cols=381 Identities=30% Similarity=0.490 Sum_probs=324.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHh-------h---------------h---
Q 013512 39 DYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWC-------D---------------Q--- 93 (441)
Q Consensus 39 ~~~~il~~~~~ia~vls~~~l~llr~~~~~~vw~~i~~~~~~~~~~~~~~~~~-------~---------------~--- 93 (441)
.+|+.++..++++.+++.+++.++|.+++.++|..+.+..+.++.....+++. + +
T Consensus 147 ~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~ 226 (577)
T KOG1362|consen 147 RSWYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTL 226 (577)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHH
Confidence 46889999999999999999999999999999988654433333222222221 0 0
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhcceecc-----
Q 013512 94 -FFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASD----- 167 (441)
Q Consensus 94 -~~~~iv~~i~~~i~~l~~~~~r~rI~~a~~llk~A~~~i~~~p~l~~~p~~~~~~~~~~~~~w~~~~~g~~~~~----- 167 (441)
...||+++++.++.+++.+..|+||+++++++|+|+|++.+.|++.+.|+.+.++..+|..+|+.+..+..+.+
T Consensus 227 l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l~t~~~~~~g 306 (577)
T KOG1362|consen 227 LDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALFLVTSGPNSEG 306 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 23689999999999999999999999999999999999999999999999999999999999998766554443
Q ss_pred -----cCCCchhHHHHHHHHH-HHHHHHHHhhcccceeeeeeeEEeeecCCCCCCCCCchHHHHHHHHHhhchhhHHHHH
Q 013512 168 -----MDDGGRWWLLLVLSVS-LFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGS 241 (441)
Q Consensus 168 -----~~~~~~~~~~~~~lf~-~~W~~~fi~~~~~~tvAg~v~~WYF~~~~~~~~~~~~~v~~s~~ra~~yhlGSia~GS 241 (441)
.+++....+..++++. ++|+++|+.|++|+++||++++|||++++ +++|..|+..|++|+++||+||+|+||
T Consensus 307 g~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~ra~~yhlGSi~~GS 384 (577)
T KOG1362|consen 307 GCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRRALRYHLGSICFGS 384 (577)
T ss_pred CceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHHHHHHhccchhhhh
Confidence 2222222223333443 99999999999999999999999999986 789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCC--c---hhHHHHHHHHHHHHHHHHHhhchhhhhhHhhcCCchhHhHHHHHHHHHhccc
Q 013512 242 LFTAAIRTLRWEIRGIRSKIGN--N---ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGV 316 (441)
Q Consensus 242 Livaiv~~lr~il~~l~~~~~~--~---~~l~cc~~c~l~~~e~~l~~in~~Ayi~iAi~G~~F~~Sak~a~~Li~~n~~ 316 (441)
|++++++++|.++||+|+|+|+ | ++++||++||+||+|+++|++|||||+++|+|||+||+|||++|++++|| .
T Consensus 385 liv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N-v 463 (577)
T KOG1362|consen 385 LLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN-V 463 (577)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH-H
Confidence 9999999999999999998874 3 58999999999999999999999999999999999999999999999999 5
Q ss_pred ceeeecchhhHHHH-HHHHHHHHHHHhhhhHHHHhhcCC--chhHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHhcc
Q 013512 317 EALVAYDCSGAVLL-MGTIVGGLITGTCAGAWTYTKWHD--RVVMVGSTAMLMG-MVLVGLAMVVVESAVTSIYICYAED 392 (441)
Q Consensus 317 ~~~~~~~~~~~~L~-lgk~~v~~i~~l~~~~~~~~~~~~--~~~~~~~~~~~i~-~~v~~~f~~v~~~~vdTifvCf~eD 392 (441)
..+++.|.++++++ +||++++. ++.+++++.+..+++ +.+.+.+.++++| |+++++|+++++|+|||+|+||+||
T Consensus 464 ~~vv~~d~vs~~llflgk~l~~~-~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~VdtlflCf~eD 542 (577)
T KOG1362|consen 464 LRVVDVDLVSDFLLFLGKLLGAI-GSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTLFLCFAED 542 (577)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEec
Confidence 55799999999876 57765544 444577766666777 6778888999999 9999999999999999999999999
Q ss_pred chhhccCChhHHHHHHHHHHHHHHhccccccc
Q 013512 393 PLLIHRWDAEFFNQMSETLHQRLQYRSARARE 424 (441)
Q Consensus 393 ~e~~~~~~p~~~~~m~~~~~~~~~~~~~~~~~ 424 (441)
||.||++ ||+|++|++.+++..+++++.+++
T Consensus 543 ~e~n~gs-~~~p~~~~~~l~~~~~~~~~~~~~ 573 (577)
T KOG1362|consen 543 PESNDGS-PEKPQFMSEQLLEILGRSNKAPRV 573 (577)
T ss_pred HhhcCCC-CCcceeeeHHHHHhcccccccchh
Confidence 9999999 899999999999999998764433
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=1.3e-61 Score=487.86 Aligned_cols=302 Identities=29% Similarity=0.533 Sum_probs=270.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhcceecc-----c--
Q 013512 96 WGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASD-----M-- 168 (441)
Q Consensus 96 ~~iv~~i~~~i~~l~~~~~r~rI~~a~~llk~A~~~i~~~p~l~~~p~~~~~~~~~~~~~w~~~~~g~~~~~-----~-- 168 (441)
.++++++++++.+++++++||||+++++++|+|+++++++|+++++|++..++..+|.++|+.+..+..+.+ .
T Consensus 2 ~~ii~~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~ 81 (334)
T PF04515_consen 2 FAIIFLILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCN 81 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 468888899999999999999999999999999999999999999999999999999999998766543321 0
Q ss_pred --------------CCCchhHHHHHHHHHHHHHHHHHhhcccceeeeeeeEEeeecCCCCCCCCCchHHHHHHHHHhhch
Q 013512 169 --------------DDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSL 234 (441)
Q Consensus 169 --------------~~~~~~~~~~~~lf~~~W~~~fi~~~~~~tvAg~v~~WYF~~~~~~~~~~~~~v~~s~~ra~~yhl 234 (441)
.|+...++.+|++|+++|+++|++|++|+++||++++|||+++++ ++|+.|+.+|++|+++||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~--~~~~~~~~~s~~~~~~~~~ 159 (334)
T PF04515_consen 82 LPFSSGSISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKP--NMPKSPVLRSLKRALTYHF 159 (334)
T ss_pred CCcccccccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcc--cccchHHHHHHHHHHHHhH
Confidence 012345788899999999999999999999999999999998853 7899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCc-----hhHHHHHHHHHHHHHHHHHhhchhhhhhHhhcCCchhHhHHHHHH
Q 013512 235 GSICYGSLFTAAIRTLRWEIRGIRSKIGNN-----ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWE 309 (441)
Q Consensus 235 GSia~GSLivaiv~~lr~il~~l~~~~~~~-----~~l~cc~~c~l~~~e~~l~~in~~Ayi~iAi~G~~F~~Sak~a~~ 309 (441)
||+|+|||++++++++|.++++++++.+++ +++.||++||++|+|+++||+||+||+++|+||++||+|||++++
T Consensus 160 GSi~~gSlivaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak~~~~ 239 (334)
T PF04515_consen 160 GSICFGSLIVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAKRAFE 239 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 999999999999999999999999987763 478999999999999999999999999999999999999999999
Q ss_pred HHHhcccceeeecchhhHHHHHHHHHHHHHHHhhhhHHHHhh----cCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 013512 310 LFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTK----WHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSI 385 (441)
Q Consensus 310 Li~~n~~~~~~~~~~~~~~L~lgk~~v~~i~~l~~~~~~~~~----~~~~~~~~~~~~~~i~~~v~~~f~~v~~~~vdTi 385 (441)
|++||+.++..+|++++.++++||++++..+++.++.+.... ..++...|.++++++++.+++++++++++++||+
T Consensus 240 L~~~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~f~~v~~~~vdti 319 (334)
T PF04515_consen 240 LIKRNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPALISFFIGYFISSIFMSVYSSAVDTI 319 (334)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999899999999999999999998888777655431 2234567888999999999999999999999999
Q ss_pred HHHHhccchhhccC
Q 013512 386 YICYAEDPLLIHRW 399 (441)
Q Consensus 386 fvCf~eD~e~~~~~ 399 (441)
|+||+||||.++++
T Consensus 320 ~vc~~~d~e~~~~~ 333 (334)
T PF04515_consen 320 FVCYAEDPEMNKND 333 (334)
T ss_pred HHHHHHHhhhhhcC
Confidence 99999999998765
No 3
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=63.33 E-value=46 Score=29.36 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=27.8
Q ss_pred hhhhhHhhcCCchhHhHHHHHHHHHhcccce
Q 013512 288 YAYVQIAVYGKGFNRSARDAWELFQSTGVEA 318 (441)
Q Consensus 288 ~Ayi~iAi~G~~F~~Sak~a~~Li~~n~~~~ 318 (441)
++.-.+.+.++++.+|-|++|++.++|.++.
T Consensus 105 f~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~ 135 (149)
T PF10110_consen 105 FVLPLIVLENKSFKEALKESWQLTKGRFWRI 135 (149)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCcHHHH
Confidence 5777889999999999999999999998774
No 4
>PF09622 DUF2391: Putative integral membrane protein (DUF2391); InterPro: IPR024464 Members of this protein family are found in archaea and bacteria. Their function is unknown.
Probab=51.99 E-value=50 Score=32.50 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=45.5
Q ss_pred hhhHHHhhhhhhccceeecccccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhch
Q 013512 5 LCCLSHVIGEMFSDRFNISRYTNQKVETKGELTEDYWPIYAVAGGVGALLGWMWLLLLGSPA 66 (441)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~~~~ia~vls~~~l~llr~~~ 66 (441)
+..+|..|+|+++-..++.+ .++.+..+++.+.-....+++-+++++.|...+..+...+
T Consensus 179 l~~~sL~i~y~fvy~a~f~~--~~~~~~~~g~~~~~l~~tivsY~isl~vsl~~L~~f~~~~ 238 (267)
T PF09622_consen 179 LVLLSLAIMYLFVYKAGFRG--QHKREEQRGIFQRFLRFTIVSYLISLLVSLLMLWFFGRLD 238 (267)
T ss_pred HHHHHHHHHHHHHHhhccCC--ccchhhccCccchhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 56778899999998777765 5566677777776445556788888888888888887776
No 5
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=37.76 E-value=47 Score=35.35 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHhccchhhccCChhHHHHHHHHHHHHHHhc
Q 013512 376 VVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYR 418 (441)
Q Consensus 376 ~v~~~~vdTifvCf~eD~e~~~~~~p~~~~~m~~~~~~~~~~~ 418 (441)
.||-...-|++-|||.|||. .+|||.-..+. .+-+++.++
T Consensus 77 ~Vy~~i~itvLacFC~~pEl--Ash~~~v~~IP-~llev~~~~ 116 (698)
T KOG2611|consen 77 DVYLQISITVLACFCRVPEL--ASHEEMVSRIP-LLLEVMSKG 116 (698)
T ss_pred HHHHHHHHHHHHHHhCChhh--ccCHHHHHhhh-HHHHHHHhc
Confidence 57777788999999999997 66777766554 455666665
No 6
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=32.42 E-value=87 Score=26.08 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=20.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHh
Q 013512 38 EDYWPIYAVAGGVGALLGWMWLLLLGS 64 (441)
Q Consensus 38 ~~~~~il~~~~~ia~vls~~~l~llr~ 64 (441)
.++||.+....+.++++|++..+..|+
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC 40 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKC 40 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHh
Confidence 567998877777788888777666653
No 7
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=25.66 E-value=22 Score=31.56 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=29.1
Q ss_pred hccCChhHH-HHHHHHHHHHHHhccccccccccccccccccccc
Q 013512 396 IHRWDAEFF-NQMSETLHQRLQYRSARAREVLTNNRFDSHTQES 438 (441)
Q Consensus 396 ~~~~~p~~~-~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (441)
.++-.||.| +.++..|.++=+| .+.+++||++|+..++.
T Consensus 24 ~n~~GpeFYl~~~S~sW~eVEdk----LraIl~d~~Vp~~~K~A 63 (152)
T PF15186_consen 24 RNGGGPEFYLENRSLSWEEVEDK----LRAILEDSQVPREAKRA 63 (152)
T ss_pred hcCCCchHHHHhccCCHHHHHHH----HHHHHhCccCCHHHHHH
Confidence 344568998 7788888766444 47899999999987763
No 8
>PTZ00370 STEVOR; Provisional
Probab=24.17 E-value=1.2e+02 Score=30.00 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHH
Q 013512 95 FWGVAFATAAALQFLYVISVIDRLS 119 (441)
Q Consensus 95 ~~~iv~~i~~~i~~l~~~~~r~rI~ 119 (441)
..+++++++++++++.++|++||=+
T Consensus 259 iaalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 259 IAALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567788888887777766666643
No 9
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=24.05 E-value=1.2e+02 Score=29.99 Aligned_cols=24 Identities=8% Similarity=0.096 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcH
Q 013512 95 FWGVAFATAAALQFLYVISVIDRL 118 (441)
Q Consensus 95 ~~~iv~~i~~~i~~l~~~~~r~rI 118 (441)
..+++++++++++++.++|++||=
T Consensus 263 iaalvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 263 IAALVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888888777776666663
No 10
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.53 E-value=6.9e+02 Score=23.16 Aligned_cols=22 Identities=5% Similarity=0.158 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcHH
Q 013512 98 VAFATAAALQFLYVISVIDRLS 119 (441)
Q Consensus 98 iv~~i~~~i~~l~~~~~r~rI~ 119 (441)
++..+++++.+...+++|||.+
T Consensus 181 ~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 181 WVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4444555655555666666644
No 11
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=20.49 E-value=2.2e+02 Score=23.32 Aligned_cols=32 Identities=6% Similarity=-0.083 Sum_probs=25.4
Q ss_pred HHhhcHHHHHHHHHHHHHHHhhcCchHHHHHHHH
Q 013512 113 SVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFM 146 (441)
Q Consensus 113 ~~r~rI~~a~~llk~A~~~i~~~p~l~~~p~~~~ 146 (441)
..+|+++. +-+|.+++.+-++-.++++|...-
T Consensus 30 L~~~~vk~--~~i~~~a~~Ll~~m~lfFvPa~VG 61 (96)
T PF03788_consen 30 LMFKIVKL--EWIEPAANFLLKNMALFFVPAGVG 61 (96)
T ss_pred HHcCCccH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777 788999999999998998886543
Done!