Query 013512
Match_columns 441
No_of_seqs 161 out of 663
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:58:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fz4_A Putative arsenate reduc 15.0 49 0.0017 26.9 0.9 27 292-318 4-30 (120)
2 3f0i_A Arsenate reductase; str 14.2 92 0.0032 25.1 2.5 27 292-318 5-31 (119)
3 3l78_A Regulatory protein SPX; 13.7 58 0.002 26.3 1.1 26 293-318 2-27 (120)
4 3rdw_A Putative arsenate reduc 13.7 97 0.0033 25.1 2.5 26 293-318 7-32 (121)
5 3khi_A Putative metal-dependen 13.5 63 0.0022 30.4 1.4 25 388-412 221-245 (267)
6 4ae7_A Thioesterase superfamil 13.3 1.1E+02 0.0036 27.9 2.8 63 375-437 4-70 (220)
7 3ogl_Q JAZ1 incomplete degron 12.5 1.1E+02 0.0036 17.3 1.5 16 406-421 5-20 (21)
8 3gkx_A Putative ARSC family re 11.7 99 0.0034 25.0 1.9 26 293-318 6-31 (120)
9 1rw1_A Conserved hypothetical 11.5 1.1E+02 0.0036 24.3 2.0 25 294-318 3-27 (114)
10 1nwd_B GAD, glutamate decarbox 11.1 1.7E+02 0.0058 17.0 2.2 23 397-419 4-26 (28)
No 1
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=15.00 E-value=49 Score=26.90 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=24.3
Q ss_pred hHhhcCCchhHhHHHHHHHHHhcccce
Q 013512 292 QIAVYGKGFNRSARDAWELFQSTGVEA 318 (441)
Q Consensus 292 ~iAi~G~~F~~Sak~a~~Li~~n~~~~ 318 (441)
++-+||.+-|..+|+|-+++++++.+.
T Consensus 4 Mi~iY~~~~C~~c~ka~~~L~~~gi~~ 30 (120)
T 3fz4_A 4 MLTFYEYPKCSTCRRAKAELDDLAWDY 30 (120)
T ss_dssp SEEEEECSSCHHHHHHHHHHHHHTCCE
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCce
Confidence 456899999999999999999999775
No 2
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=14.18 E-value=92 Score=25.12 Aligned_cols=27 Identities=15% Similarity=0.420 Sum_probs=24.3
Q ss_pred hHhhcCCchhHhHHHHHHHHHhcccce
Q 013512 292 QIAVYGKGFNRSARDAWELFQSTGVEA 318 (441)
Q Consensus 292 ~iAi~G~~F~~Sak~a~~Li~~n~~~~ 318 (441)
.+-+||.+-|..+++|.+++++++.+.
T Consensus 5 ~i~iY~~p~C~~c~ka~~~L~~~gi~~ 31 (119)
T 3f0i_A 5 SVVIYHNPKCSKSRETLALLENQGIAP 31 (119)
T ss_dssp CCEEECCTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCce
Confidence 467899999999999999999998874
No 3
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=13.73 E-value=58 Score=26.34 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=23.2
Q ss_pred HhhcCCchhHhHHHHHHHHHhcccce
Q 013512 293 IAVYGKGFNRSARDAWELFQSTGVEA 318 (441)
Q Consensus 293 iAi~G~~F~~Sak~a~~Li~~n~~~~ 318 (441)
+-+||++-|+.+++|-+++.+++.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~ 27 (120)
T 3l78_A 2 VTLFLSPSCTSCRKARAWLNRHDVVF 27 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCE
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 45899999999999999999998775
No 4
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=13.70 E-value=97 Score=25.08 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=23.5
Q ss_pred HhhcCCchhHhHHHHHHHHHhcccce
Q 013512 293 IAVYGKGFNRSARDAWELFQSTGVEA 318 (441)
Q Consensus 293 iAi~G~~F~~Sak~a~~Li~~n~~~~ 318 (441)
+-+||.+-|..+++|-+++++++.+.
T Consensus 7 i~iY~~p~C~~c~ka~~~L~~~gi~~ 32 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLALVEQQGITP 32 (121)
T ss_dssp CEEECCTTCHHHHHHHHHHHTTTCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 45899999999999999999998774
No 5
>3khi_A Putative metal-dependent hydrolase; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; 1.95A {Klebsiella pneumoniae subsp} PDB: 3dl1_A
Probab=13.48 E-value=63 Score=30.42 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=20.9
Q ss_pred HHhccchhhccCChhHHHHHHHHHH
Q 013512 388 CYAEDPLLIHRWDAEFFNQMSETLH 412 (441)
Q Consensus 388 Cf~eD~e~~~~~~p~~~~~m~~~~~ 412 (441)
.|-|.|+.+++.+|++|+.+++-++
T Consensus 221 ~FFe~P~~l~~~~P~LY~~L~~fyr 245 (267)
T 3khi_A 221 YFFSAPELFAPRFPALWQRFCHFYR 245 (267)
T ss_dssp HHHHCHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHCHHHHHHHHHHHC
Confidence 3567999999999999998776555
No 6
>4ae7_A Thioesterase superfamily member 5; hydrolase, hotdog-fold; 1.45A {Homo sapiens}
Probab=13.34 E-value=1.1e+02 Score=27.92 Aligned_cols=63 Identities=13% Similarity=0.017 Sum_probs=25.2
Q ss_pred HhHHHHHHHHHHHHHhcc-chhhccCChhHH--HHHHHHHHHHHHhc-ccccccccccccccccccc
Q 013512 375 MVVVESAVTSIYICYAED-PLLIHRWDAEFF--NQMSETLHQRLQYR-SARAREVLTNNRFDSHTQE 437 (441)
Q Consensus 375 ~~v~~~~vdTifvCf~eD-~e~~~~~~p~~~--~~m~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 437 (441)
++.+++..|++.-=||-. .+..|-.-|+.. ..|..-++|+.+|. .+.-.++-|-.+.+.|.|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~d~~~pn~sw~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 70 (220)
T 4ae7_A 4 MSGRGSSTDSMFSRFLPEKTDLKDYALPNASWCSDMLSLYQEFLEKTKSSGWIKLPSFKSNRDHIRG 70 (220)
T ss_dssp ---------------------CCCSSSCCTTCCHHHHHHHHHHHHHHHHSSCEECCCCSCSTTSSTT
T ss_pred ccccccchHHHHHhhcccccccccccCCCCccCHHHHHHHHHHHhhCcCCCeEECcccccChhhhcc
Confidence 567889999999999943 333343334222 55666777887776 4445777776666666654
No 7
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=12.46 E-value=1.1e+02 Score=17.32 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhcccc
Q 013512 406 QMSETLHQRLQYRSAR 421 (441)
Q Consensus 406 ~m~~~~~~~~~~~~~~ 421 (441)
.-..+++++++|++++
T Consensus 5 aRk~SLqRFleKRk~R 20 (21)
T 3ogl_Q 5 ARRASLHRFLEKRKDR 20 (26)
T ss_pred hHHHHHHHHHHHhhcc
Confidence 3445789999998663
No 8
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=11.75 E-value=99 Score=24.97 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=23.7
Q ss_pred HhhcCCchhHhHHHHHHHHHhcccce
Q 013512 293 IAVYGKGFNRSARDAWELFQSTGVEA 318 (441)
Q Consensus 293 iAi~G~~F~~Sak~a~~Li~~n~~~~ 318 (441)
+-+||.+-|..+++|-+++++++.+.
T Consensus 6 i~iY~~p~C~~c~ka~~~L~~~gi~~ 31 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKKWLIENNIEY 31 (120)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCChHHHHHHHHHHHcCCce
Confidence 56899999999999999999998774
No 9
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=11.45 E-value=1.1e+02 Score=24.35 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=22.5
Q ss_pred hhcCCchhHhHHHHHHHHHhcccce
Q 013512 294 AVYGKGFNRSARDAWELFQSTGVEA 318 (441)
Q Consensus 294 Ai~G~~F~~Sak~a~~Li~~n~~~~ 318 (441)
-+||++-|+.+++|-+++.+++.+.
T Consensus 3 ~iY~~~~C~~C~kak~~L~~~gi~~ 27 (114)
T 1rw1_A 3 VLYGIKACDTMKKARTWLDEHKVAY 27 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCE
T ss_pred EEEECCCChHHHHHHHHHHHCCCce
Confidence 4789999999999999999998874
No 10
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=11.09 E-value=1.7e+02 Score=17.03 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=18.3
Q ss_pred ccCChhHHHHHHHHHHHHHHhcc
Q 013512 397 HRWDAEFFNQMSETLHQRLQYRS 419 (441)
Q Consensus 397 ~~~~p~~~~~m~~~~~~~~~~~~ 419 (441)
++++.|..-+|-..|++++++++
T Consensus 4 kktdsevqlemitawkkfveekk 26 (28)
T 1nwd_B 4 KKTDSEVQLEMITAWKKFVEEKK 26 (28)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHHHHHHhh
Confidence 45677888889999999988764
Done!