Query 013512
Match_columns 441
No_of_seqs 161 out of 663
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 11:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013512.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013512hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rw1a_ c.47.1.12 (A:) Hypothe 12.8 42 0.0031 24.9 2.0 26 294-319 3-28 (114)
2 d1z3ea1 c.47.1.12 (A:1-114) Re 12.2 34 0.0024 25.6 1.2 27 293-319 2-28 (114)
3 d1nm3a1 c.47.1.1 (A:166-239) C 9.1 53 0.0038 22.0 1.2 25 294-318 8-32 (74)
4 d1r7ha_ c.47.1.1 (A:) Glutared 8.1 67 0.0049 21.3 1.4 25 294-318 4-28 (74)
5 d1j9ba_ c.47.1.12 (A:) Arsenat 7.7 98 0.0072 23.7 2.5 26 294-319 3-28 (138)
6 d1kqfc_ f.21.1.1 (C:) Formate 7.5 1.3E+02 0.0095 24.3 3.4 42 366-408 162-204 (216)
7 d1egoa_ c.47.1.1 (A:) Glutared 7.4 68 0.005 22.1 1.2 22 294-315 4-25 (85)
8 d1fpoa1 a.2.3.1 (A:1-76) HSC20 6.5 19 0.0014 25.0 -2.5 14 420-433 55-68 (76)
9 d2fcra_ c.23.5.1 (A:) Flavodox 6.4 1.2E+02 0.0088 24.0 2.4 24 296-319 98-121 (173)
10 d1ijda_ f.3.1.1 (A:) Light-har 6.3 1E+02 0.0073 19.2 1.4 13 233-245 19-31 (46)
No 1
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.85 E-value=42 Score=24.88 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=23.2
Q ss_pred hhcCCchhHhHHHHHHHHHhccccee
Q 013512 294 AVYGKGFNRSARDAWELFQSTGVEAL 319 (441)
Q Consensus 294 Ai~G~~F~~Sak~a~~Li~~n~~~~~ 319 (441)
-+||.+=|.++|+|.+.++.|+.+.-
T Consensus 3 ~iY~~p~Cs~srka~~~L~~~~i~~~ 28 (114)
T d1rw1a_ 3 VLYGIKACDTMKKARTWLDEHKVAYD 28 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCChHHHHHHHHHHHcCCCeE
Confidence 37999999999999999999998863
No 2
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=12.17 E-value=34 Score=25.57 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=23.7
Q ss_pred HhhcCCchhHhHHHHHHHHHhccccee
Q 013512 293 IAVYGKGFNRSARDAWELFQSTGVEAL 319 (441)
Q Consensus 293 iAi~G~~F~~Sak~a~~Li~~n~~~~~ 319 (441)
+-+||.+=|.++|+|.+.++.|+.+..
T Consensus 2 i~ly~~~~C~~~rka~~~L~~~~i~~~ 28 (114)
T d1z3ea1 2 VTLYTSPSCTSCRKARAWLEEHEIPFV 28 (114)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCEE
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCCeE
Confidence 347999999999999999999998853
No 3
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=9.06 E-value=53 Score=22.03 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=17.9
Q ss_pred hhcCCchhHhHHHHHHHHHhcccce
Q 013512 294 AVYGKGFNRSARDAWELFQSTGVEA 318 (441)
Q Consensus 294 Ai~G~~F~~Sak~a~~Li~~n~~~~ 318 (441)
-||+++.|+=+++|-+++.+++...
T Consensus 8 ~iYs~~~C~~C~~ak~lL~~~~i~~ 32 (74)
T d1nm3a1 8 SIFTKPGCPFCAKAKQLLHDKGLSF 32 (74)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTCCC
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCe
Confidence 4666777777777777888887764
No 4
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=8.15 E-value=67 Score=21.35 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=20.1
Q ss_pred hhcCCchhHhHHHHHHHHHhcccce
Q 013512 294 AVYGKGFNRSARDAWELFQSTGVEA 318 (441)
Q Consensus 294 Ai~G~~F~~Sak~a~~Li~~n~~~~ 318 (441)
-+|+++.|+-++++-+++++++.+.
T Consensus 4 ~iYt~~~C~~C~~ak~~L~~~~i~~ 28 (74)
T d1r7ha_ 4 TLYTKPACVQCTATKKALDRAGLAY 28 (74)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEeCCCChhHHHHHHHHHHcCCce
Confidence 4678888888888888899998874
No 5
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=7.69 E-value=98 Score=23.66 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=23.1
Q ss_pred hhcCCchhHhHHHHHHHHHhccccee
Q 013512 294 AVYGKGFNRSARDAWELFQSTGVEAL 319 (441)
Q Consensus 294 Ai~G~~F~~Sak~a~~Li~~n~~~~~ 319 (441)
-+||.+=|..+|+|.++++.++.+.-
T Consensus 3 ~iY~~p~Cs~srkal~~L~~~~i~~~ 28 (138)
T d1j9ba_ 3 TIYHNPACGTSRNTLEMIRNSGTEPT 28 (138)
T ss_dssp EEECCTTCHHHHHHHHHHHHTTCCCE
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 47899999999999999999998753
No 6
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=7.46 E-value=1.3e+02 Score=24.28 Aligned_cols=42 Identities=5% Similarity=0.184 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhHHH-HHHHHHHHHHhccchhhccCChhHHHHHH
Q 013512 366 MGMVLVGLAMVVVE-SAVTSIYICYAEDPLLIHRWDAEFFNQMS 408 (441)
Q Consensus 366 i~~~v~~~f~~v~~-~~vdTifvCf~eD~e~~~~~~p~~~~~m~ 408 (441)
+++++.++++++.. ...++++-.|. |.|..++.||.-++++.
T Consensus 162 ~~~vi~Hvy~a~~~~~~l~~M~tG~v-~~~~~~~~h~~w~~~~~ 204 (216)
T d1kqfc_ 162 IHAILIHMYMAFWVKGSIKGMIEGKV-SRRWAKKHHPRWYREIE 204 (216)
T ss_dssp HHHHHHHHHHHHHBTTHHHHHHTCEE-EHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHccccccchhheeec-cHHHHHHHHHHHHHHHH
Confidence 44555666665433 45667766665 44545666776665544
No 7
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}
Probab=7.42 E-value=68 Score=22.09 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=14.9
Q ss_pred hhcCCchhHhHHHHHHHHHhcc
Q 013512 294 AVYGKGFNRSARDAWELFQSTG 315 (441)
Q Consensus 294 Ai~G~~F~~Sak~a~~Li~~n~ 315 (441)
-||+++.|+-+++|-+++.+++
T Consensus 4 viysk~~Cp~C~~aK~ll~~~~ 25 (85)
T d1egoa_ 4 VIFGRSGCPYCVRAKDLAEKLS 25 (85)
T ss_dssp EEECCTTSTHHHHHHHHHHHHH
T ss_pred EEEeCCCCHhHHHHHHHHHHcC
Confidence 3667777777777777777754
No 8
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=6.50 E-value=19 Score=24.99 Aligned_cols=14 Identities=14% Similarity=0.193 Sum_probs=10.7
Q ss_pred cccccccccccccc
Q 013512 420 ARAREVLTNNRFDS 433 (441)
Q Consensus 420 ~~~~~~~~~~~~~~ 433 (441)
+++++|++||..+.
T Consensus 55 ~~Ay~vL~dp~~R~ 68 (76)
T d1fpoa1 55 NQAWQTLRHPLMRA 68 (76)
T ss_dssp HHHHHHHHSHHHHH
T ss_pred HHHHHHhCCHHHHH
Confidence 56799999887654
No 9
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
Probab=6.36 E-value=1.2e+02 Score=23.98 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=21.0
Q ss_pred cCCchhHhHHHHHHHHHhccccee
Q 013512 296 YGKGFNRSARDAWELFQSTGVEAL 319 (441)
Q Consensus 296 ~G~~F~~Sak~a~~Li~~n~~~~~ 319 (441)
|++.||+++++-.+.++++|...+
T Consensus 98 y~~~F~~a~~~l~~~l~~~GA~~I 121 (173)
T d2fcra_ 98 YPDNFCDAIEEIHDCFAKQGAKPV 121 (173)
T ss_dssp CTTSTTTHHHHHHHHHHHTTCEEE
T ss_pred chhhHHHHHHHHHHHHHhCCCEEe
Confidence 578999999999999999987753
No 10
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=6.31 E-value=1e+02 Score=19.22 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=10.7
Q ss_pred chhhHHHHHHHHH
Q 013512 233 SLGSICYGSLFTA 245 (441)
Q Consensus 233 hlGSia~GSLiva 245 (441)
-+||++.+|+++-
T Consensus 19 ~LgsVav~s~~VH 31 (46)
T d1ijda_ 19 MLGAVAITALLVH 31 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4799999999873
Done!