BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013513
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 261 bits (666), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 155/437 (35%), Positives = 244/437 (55%), Gaps = 30/437 (6%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 70 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 124
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 125 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 171
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 172 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 231
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNPTSIGHYLG 346
+ L L PGTS+L++ V ++ GL ++GI+ D + + + H+LG
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLG 357
Query: 347 MDVHDSSVVTYERP--LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYE 404
+DVHD V +R LEPG+V+T+EPG+YI PE++RGIGIRIED+++ITETG E
Sbjct: 358 LDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNE 417
Query: 405 VLTGSLPKEIKHIESLL 421
LT S+ K+ + IE+L+
Sbjct: 418 NLTASVVKKPEEIEALM 434
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 260 bits (665), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/437 (35%), Positives = 244/437 (55%), Gaps = 30/437 (6%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 70 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 124
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 125 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 171
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 172 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 231
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNPTSIGHYLG 346
+ L L PGTS+L++ V ++ GL ++GI+ D + + + H+LG
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMAGLSHWLG 357
Query: 347 MDVHDSSVVTYERP--LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYE 404
+DVHD V +R LEPG+V+T+EPG+YI PE++RGIGIRIED+++ITETG E
Sbjct: 358 LDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNE 417
Query: 405 VLTGSLPKEIKHIESLL 421
LT S+ K+ + IE+L+
Sbjct: 418 NLTASVVKKPEEIEALM 434
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 260 bits (664), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/437 (35%), Positives = 244/437 (55%), Gaps = 30/437 (6%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 70 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 124
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWYGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 125 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 171
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 172 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 231
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNPTSIGHYLG 346
+ L L PGTS+L++ V ++ GL ++GI+ D + + + H+LG
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLG 357
Query: 347 MDVHDSSVVTYERP--LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYE 404
+DVHD V +R LEPG+V+T+EPG+YI PE++RGIGIRIED+++ITETG E
Sbjct: 358 LDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNE 417
Query: 405 VLTGSLPKEIKHIESLL 421
LT S+ K+ + IE+L+
Sbjct: 418 NLTASVVKKPEEIEALM 434
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 155/437 (35%), Positives = 244/437 (55%), Gaps = 30/437 (6%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 70 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 124
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 125 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 171
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 172 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 231
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNPTSIGHYLG 346
+ L L PGTS+L++ V ++ GL ++GI+ D + + + H+LG
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLG 357
Query: 347 MDVHDSSVVTYERP--LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYE 404
+DVHD V +R LEPG+V+T+EPG+YI PE++RGIGIRIED+++ITETG E
Sbjct: 358 LDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNE 417
Query: 405 VLTGSLPKEIKHIESLL 421
LT S+ K+ + IE+L+
Sbjct: 418 NLTASVVKKPEEIEALM 434
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 258 bits (660), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 154/437 (35%), Positives = 243/437 (55%), Gaps = 30/437 (6%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 70 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 124
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 125 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 171
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 172 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 231
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNPTSIGHYLG 346
+ L L PGTS+L++ V ++ GL ++GI+ D + + + H+LG
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLG 357
Query: 347 MDVHDSSVVTYERP--LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYE 404
+DVHD V +R LEPG+V+T+ PG+YI PE++RGIGIRIED+++ITETG E
Sbjct: 358 LDVHDVGVYGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNE 417
Query: 405 VLTGSLPKEIKHIESLL 421
LT S+ K+ + IE+L+
Sbjct: 418 NLTASVVKKPEEIEALM 434
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 258 bits (658), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 154/437 (35%), Positives = 243/437 (55%), Gaps = 30/437 (6%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 70 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 124
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 125 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 171
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 172 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 231
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNPTSIGHYLG 346
+ L L PGTS+L++ V ++ GL ++GI+ D + + + H+LG
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLG 357
Query: 347 MDVHDSSVVTYERP--LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYE 404
+DVHD V +R LEPG+V+T+ PG+YI PE++RGIGIRIED+++ITETG E
Sbjct: 358 LDVHDVGVYGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNE 417
Query: 405 VLTGSLPKEIKHIESLL 421
LT S+ K+ + IE+L+
Sbjct: 418 NLTASVVKKPEEIEALM 434
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 257 bits (657), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 154/437 (35%), Positives = 243/437 (55%), Gaps = 30/437 (6%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 70 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 124
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 125 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 171
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 172 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 231
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N ++ Y+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILAYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNPTSIGHYLG 346
+ L L PGTS+L++ V ++ GL ++GI+ D + + + H+LG
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLG 357
Query: 347 MDVHDSSVVTYERP--LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYE 404
+DVHD V +R LEPG+V+T+EPG+YI PE++RGIGIRIED+++ITETG E
Sbjct: 358 LDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNE 417
Query: 405 VLTGSLPKEIKHIESLL 421
LT S+ K+ + IE+L+
Sbjct: 418 NLTASVVKKPEEIEALM 434
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 257 bits (657), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 154/437 (35%), Positives = 243/437 (55%), Gaps = 30/437 (6%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 70 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 124
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 125 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 171
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 172 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 231
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNPTSIGHYLG 346
+ L L PGTS+L++ V ++ GL ++GI+ D + + + H+LG
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLG 357
Query: 347 MDVHDSSVVTYERP--LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYE 404
+DV D V +R LEPG+V+T+EPG+YI PE++RGIGIRIED+++ITETG E
Sbjct: 358 LDVADVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNE 417
Query: 405 VLTGSLPKEIKHIESLL 421
LT S+ K+ + IE+L+
Sbjct: 418 NLTASVVKKPEEIEALM 434
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 154/437 (35%), Positives = 243/437 (55%), Gaps = 30/437 (6%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 70 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 124
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 125 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 171
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 172 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 231
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N ++HY+ N+ ++ DGDLVL+ GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNPTSIGHYLG 346
+ L L PGTS+L++ V ++ GL ++GI+ D + + + H+LG
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLG 357
Query: 347 MDVHDSSVVTYERP--LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYE 404
+DVHD V +R LEPG+V+T+EPG+YI PE++RGIGIRIED+++ITETG E
Sbjct: 358 LDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNE 417
Query: 405 VLTGSLPKEIKHIESLL 421
LT S+ K+ + IE+L+
Sbjct: 418 NLTASVVKKPEEIEALM 434
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 154/437 (35%), Positives = 243/437 (55%), Gaps = 30/437 (6%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 70 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 124
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 125 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 171
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 172 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 231
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N ++HY+ N+ ++ DGDLVL+D GCE GY +TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQAQREIYDIVLESL 297
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNPTSIGHYLG 346
+ L L PGTS+L++ V ++ GL ++GI+ D + + + H+LG
Sbjct: 298 ETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLG 357
Query: 347 MDVHDSSVVTYERP--LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYE 404
+DVHD V +R LEPG+V+T+EPG+YI PE++RGIGIRIED+++ITETG E
Sbjct: 358 LDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNE 417
Query: 405 VLTGSLPKEIKHIESLL 421
LT S+ K+ + IE+L+
Sbjct: 418 NLTASVVKKPEEIEALM 434
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 154/438 (35%), Positives = 243/438 (55%), Gaps = 31/438 (7%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 70 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 124
VL +H + +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSV-LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLL 121
Query: 125 GRSSKLFHNQ-ETA---VQTYTNLEAFQKADFYGAVRNLSR---------LTHELRWVKS 171
++H Q E A V + LE +K G+ +NL+ + HE+R KS
Sbjct: 122 NGLDVVYHAQGEYAYADVIVNSALEKLRK----GSRQNLTAPATMIDWRPVVHEMRLFKS 177
Query: 172 PAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGP 231
P E+ ++R + I A + M + +E L + +E GA+ ++N +VG G
Sbjct: 178 PEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGE 237
Query: 232 NAAVIHYSRND-QKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQT 290
N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++
Sbjct: 238 NGCILHYTENECXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLES 297
Query: 291 NKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNPTSIGHYL 345
+ L L PGTS+L++ V ++ GL ++GI+ D + + + +L
Sbjct: 298 LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSAWL 357
Query: 346 GMDVHDSSVVTYERP--LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGY 403
G+DVHD V +R LEPG+V+T+EPG+YI PE++RGIGIRIED+++ITETG
Sbjct: 358 GLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGN 417
Query: 404 EVLTGSLPKEIKHIESLL 421
E LT S+ K+ + IE+L+
Sbjct: 418 ENLTASVVKKPEEIEALM 435
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 209/414 (50%), Gaps = 42/414 (10%)
Query: 15 YISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLS-- 72
+ R+RL+ LP+ S+ IL A + Y + + N+ Y+TG +P + L
Sbjct: 6 FAQNRERLVNTLPDESITILFAGQAPHXSADAHYKFVPNRNFYYVTGIDEPNVIFXLKKF 65
Query: 73 -HECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILP-DMIGRSSKL 130
+ +F+ ++ W G+ T ++A +S I++++ D ++
Sbjct: 66 GNSVEETLFIEKSDPVXEKWVGK---------TVSNEEAEKISGIKKVIYLDSFEKTXSN 116
Query: 131 FHNQETAVQTYTNLEA-------FQKADFYGAVR---------NLSRLTHELRWVKSPAE 174
E Y +LE + F VR N+ ELR K+ E
Sbjct: 117 IFFTENVKHLYLDLECREWKGTETKTLAFAKHVREQYPHVTIGNVYPNICELRVFKTDEE 176
Query: 175 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAA 234
+++++E+ ++ + + H+K+ E L A+F++ K G + AFN ++ G NA
Sbjct: 177 IEIIKEAIAVTKDGIYNVLKHAKADXXEYELEAQFDFTLKSSGIKHHAFNTILASGKNAT 236
Query: 235 VIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKEC 294
V+HY ND +I +GDLVL+D+G + Y +D++ T+P G+FSS ++ +Y+++L KE
Sbjct: 237 VLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQIYNIVLNALKET 296
Query: 295 LELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSV 354
E+ PG ++ ++ +L +G K +G++ D + ++ + H+LG+D HD V
Sbjct: 297 TEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQED--EELSKYYYHGVSHFLGLDTHD--V 352
Query: 355 VTY-ERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLT 407
TY +R LE G VITIEPG+YI IGIRIED++L+T+ G+E L+
Sbjct: 353 GTYKDRVLEEGXVITIEPGLYIEE--------ESIGIRIEDDILVTKDGHENLS 398
>pdb|2IW2|A Chain A, Crystal Structure Of Human Prolidase
pdb|2IW2|B Chain B, Crystal Structure Of Human Prolidase
pdb|2OKN|A Chain A, Crystal Strcture Of Human Prolidase
pdb|2OKN|B Chain B, Crystal Strcture Of Human Prolidase
Length = 494
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 122/458 (26%), Positives = 217/458 (47%), Gaps = 60/458 (13%)
Query: 19 RKRLLEILPEN------SVAILAAAPE--KMMTDVVPYPYRQDANYLYITGCQQPGGVAV 70
R+RL E L +N S+ +L E + TD +RQ++ + + G +PG V
Sbjct: 28 RQRLCERLRKNPAVQAGSIVVLQGGEETQRYCTDT-GVLFRQESFFHWAFGVTEPGCYGV 86
Query: 71 LSHECGL-CMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDM---IGR 126
+ + G +F+P A W G+I + E + D + +I +L +
Sbjct: 87 IDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDVQYVDEIASVLTSQKPSVLL 146
Query: 127 SSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGC 186
+ + + +V + + K + + L E R K+ EL+++R + I
Sbjct: 147 TLRGVNTDSGSVCREASFDGISKFEVNNTI--LHPEIVECRVFKTDMELEVLRYTNKISS 204
Query: 187 QALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQR-MAFNPVVGGGPNAAVIHYSR----N 241
+A + M K E L + FE+ C RG R ++ + G G N+AV+HY N
Sbjct: 205 EAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPN 264
Query: 242 DQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPG 301
D+ I +GD+ L D+G E + + SD+T ++P G F++ ++A+Y+ +L++++ + PG
Sbjct: 265 DRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPG 324
Query: 302 TSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELN------PTSIGHYLGMDVHDSS-- 353
+H + + + L +GI+ S D + + P +GH+LG+DVHD
Sbjct: 325 VWWPDMHRLADRIHLEELAHMGIL-SGSVDAMVQAHLGAVFMPHGLGHFLGIDVHDVGGY 383
Query: 354 -------------VVTYERPLEPGVVITIEPGIYI-------------PLSFSGPE---R 384
+ R L+PG+V+T+EPGIY SF E R
Sbjct: 384 PEGVERIDEPGLRSLRTARHLQPGMVLTVEPGIYFIDHLLDEALADPARASFFNREVLQR 443
Query: 385 FRGI-GIRIEDEVLITETGYEVLTGSLPKEIKHIESLL 421
FRG G+RIE++V++T++G E+LT +P+ ++ IE+ +
Sbjct: 444 FRGFGGVRIEEDVVVTDSGIELLT-CVPRTVEEIEACM 480
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/399 (26%), Positives = 192/399 (48%), Gaps = 66/399 (16%)
Query: 18 RRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECG 76
R ++L++ + ENS+ + A P N Y +G GG ++
Sbjct: 4 RLEKLVKFMDENSIDRVFIAKP---------------VNVYYFSGTSPLGGGYIIVDGDE 48
Query: 77 LCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQET 136
+++PE E K + P+ K ++ D I ++ N ET
Sbjct: 49 ATLYVPELEY----------------EMAKEESKLPVVKFKKF--DEI---YEILKNTET 87
Query: 137 ----AVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQT 192
+Y+ +E F++ + + + +LR +K+ E++++ ++ I +A++
Sbjct: 88 LGIEGTLSYSMVENFKEKSNVKEFKKIDDVIKDLRIIKTKEEIEIIEKACEIADKAVMAA 147
Query: 193 MLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVL 252
+ E +AAK EY KM GA++ AF+ ++ G +A+ H +D++I+ GDLV+
Sbjct: 148 IEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIASGHRSALPHGVASDKRIERGDLVV 207
Query: 253 MDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSV 312
+D+G + Y SD+TRT GS + + +Y+++L+ K +E PG + ++
Sbjct: 208 IDLGALYNHYNSDITRTI-VVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELD---- 262
Query: 313 GMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTY--ERPLEPGVVITIE 370
+ R+ +KE G Y + S+GH +G+++H+ ++ E L+ G+VITIE
Sbjct: 263 SIAREIIKEYG---------YGDYFIHSLGHGVGLEIHEWPRISQYDETVLKEGMVITIE 313
Query: 371 PGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGS 409
PGIYIP + G+RIED VLITE G + LT +
Sbjct: 314 PGIYIP---------KLGGVRIEDTVLITENGAKRLTKT 343
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 109/395 (27%), Positives = 191/395 (48%), Gaps = 62/395 (15%)
Query: 20 KRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHECGLC 78
K+++E + +NS+ A+L A ++ N YI+G G +L
Sbjct: 9 KKIIEFMDKNSIDAVLIA---------------KNPNVYYISGASPLAGGYILITGESAT 53
Query: 79 MFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDM--IGRSSKLFHNQET 136
+++PE + I E FK M + + L + +G S L +
Sbjct: 54 LYVPELEYEMAKEESNIP-----VEKFK-----KMDEFYKALEGIKSLGIESSLPYGFIE 103
Query: 137 AVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHS 196
++ N++ F+K D + ++R +KS E+K++ ++ I +A++ +
Sbjct: 104 ELKKKANIKEFKKVD---------DVIRDMRIIKSEKEIKIIEKACEIADKAVMAAIEEI 154
Query: 197 KSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVG 256
E +AAK EY KM GA++ AF+ ++ G +A+ H +D++I+ GDLV++D+G
Sbjct: 155 TEGKKEREVAAKVEYLMKMNGAEKPAFDTIIASGYRSALPHGVASDKRIERGDLVVIDLG 214
Query: 257 CELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLR 316
Y SD+TRT GS + ++ +Y+++L+ K+ +E PG + ++ + R
Sbjct: 215 ALYQHYNSDITRTI-VVGSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELD----SIAR 269
Query: 317 KGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTY--ERPLEPGVVITIEPGIY 374
+ E G Y E S+GH +G++VH+ V+ E L G+VITIEPGIY
Sbjct: 270 NIIAEYG---------YGEYFNHSLGHGVGLEVHEWPRVSQYDETVLREGMVITIEPGIY 320
Query: 375 IPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGS 409
IP + G+RIED +LIT+ G + LT +
Sbjct: 321 IP---------KIGGVRIEDTILITKNGSKRLTKT 346
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 136/256 (53%), Gaps = 30/256 (11%)
Query: 163 THELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMA 222
++R VK E++ ++++ I +A L+T+ ++ E +AA EY + GA+ +A
Sbjct: 127 VKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGVA 186
Query: 223 FNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEA 282
F+ +V G +A+ H +D+ ++ GD++++D G Y +D+TR G S +
Sbjct: 187 FDTIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVV-SIGEPSDEVKE 245
Query: 283 LYDLILQTNKECLELCMPGTS--LLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTS 340
++ ++L+ + L++ G + LL + R+ ++E G Y E S
Sbjct: 246 VHSIVLEAQERALKIAKAGVTGKLLD------SVAREFIREKG---------YGEFFGHS 290
Query: 341 IGHYLGMDVHDSSVVTY--ERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLI 398
+GH +G++VH+ +++ + PL VV T+EPGIY+ F GIRIE++V++
Sbjct: 291 LGHGIGLEVHEGPAISFRNDSPLPENVVFTVEPGIYLEGKF---------GIRIEEDVVL 341
Query: 399 TETGYEVLTGSLPKEI 414
E G E+LT +LP+ I
Sbjct: 342 KEQGCEILT-TLPRSI 356
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 135/258 (52%), Gaps = 28/258 (10%)
Query: 160 SRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ 219
S L +LR +K+ +E+K+++E+A I A + + E ++ + E+ + +GA
Sbjct: 121 SGLVEKLRLIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGAT 180
Query: 220 RMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 279
+F+ +V G +A+ H +++ I+ GD V +D G GY SD+TRT L
Sbjct: 181 SSSFDIIVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKL 240
Query: 280 EEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPT 339
+E +Y+++L+ + G + + + + R + E G Y E
Sbjct: 241 KE-IYNIVLEAQLRGVNGIKAGLTGRE----ADALTRDYITEKG---------YGEYFGH 286
Query: 340 SIGHYLGMDVHDSSVVTY--ERPLEPGVVITIEPGIYIPLSFSGPERFRGI-GIRIEDEV 396
S GH +G+++H++ + + + LEPG+ +T+EPGIYIP GI G+RIED++
Sbjct: 287 STGHGIGLEIHEAPGLAFRSDTVLEPGMAVTVEPGIYIP----------GIGGVRIEDDI 336
Query: 397 LITETGYEVLTGSLPKEI 414
++T G EV+T S PKE+
Sbjct: 337 IVTSEGNEVITKS-PKEL 353
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 135/313 (43%), Gaps = 32/313 (10%)
Query: 98 VDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVR 157
V+ P TF D P +K++EIL ++ ++ + K F +
Sbjct: 64 VNNFPATFWHDGENPYAKLREILEELGISKGRILIEDTMRADWLIGIMKLGKFTF----Q 119
Query: 158 NLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRG 217
LS L ELR +K E+K+M ++ I + + + E LA K E +
Sbjct: 120 PLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIR-EL 178
Query: 218 AQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFS 277
+ +AF P+V G NAA H+ ++KI GD++++D G GY SD+TRT G
Sbjct: 179 SDGIAFEPIVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRT-IGLGELD 237
Query: 278 SLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELN 337
+Y+++ + + G + + ++ K Y E
Sbjct: 238 ERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVISKA-------------GYGEYF 284
Query: 338 PTSIGHYLGMDVHDSSVV--TYERPLEPGVVITIEPGIYIPLSFSGPERFRGI-GIRIED 394
GH LG+DVH+ + E L+ G+ TIEPGIY+P G+ G+RIED
Sbjct: 285 IHRTGHGLGLDVHEEPYIGPDGEVILKNGMTFTIEPGIYVP----------GLGGVRIED 334
Query: 395 EVLITETGYEVLT 407
++++ E LT
Sbjct: 335 DIVVDEGKGRRLT 347
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 26/245 (10%)
Query: 159 LSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMR-G 217
+S + ELR +K E+K +++A I + + + E LA + EY K G
Sbjct: 140 ISPVISELREIKDKDEIKAHKKAAEIVDKVFYRFIEGKLEGKSERELANRIEYMIKNEFG 199
Query: 218 AQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFS 277
A ++F P+V GPN A H+ + +KI GD+V+ D G + GY SD+TRT G S
Sbjct: 200 ADDVSFEPIVASGPNGANPHHRPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTV-VVGPPS 258
Query: 278 SLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELN 337
+ +Y+++ + + ++ G + + G++ K Y E
Sbjct: 259 EEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATARGIISK-------------YGYGEYF 305
Query: 338 PTSIGHYLGMDVHDSSVVT--YERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDE 395
GH LG+DVH+ ++ ++ L+ G+V TIEPGIY+ F G+RIED+
Sbjct: 306 IHRTGHGLGIDVHEEPYISPGNKKILKDGMVFTIEPGIYLQGKF---------GVRIEDD 356
Query: 396 VLITE 400
V + +
Sbjct: 357 VALVD 361
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 118/264 (44%), Gaps = 42/264 (15%)
Query: 150 ADFYGAVRNLSR-LTHELRWVKSPAELK-LMRESASIGCQALLQTMLHSKSHPY------ 201
AD G + L+ + +LR VK AE+ L + A+I +H++ +
Sbjct: 130 ADALGVLPVLATDVLRQLRMVKEAAEVDALAKAGAAI-------DRVHARVPAFLVPGRT 182
Query: 202 EGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELH- 260
E +AA G +AF +VG GP+ A H+ +D+K+ GD+V++D+G
Sbjct: 183 EAQVAADIAEAIVAEGHSAVAFV-IVGSGPHGADPHHGYSDRKLQVGDIVVVDIGGTYEP 241
Query: 261 GYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLK 320
GY SD TRT+ G S Y + + + ++ PG + Q+ + R L
Sbjct: 242 GYYSDSTRTY-SIGDPSPDVAQQYSALQRAQRAAVDAVRPGVTAAQVDAAA----RDVLA 296
Query: 321 EIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSS--VVTYERPLEPGVVITIEPGIYIPLS 378
+ G+ E GH +G+ VH+ V E PL G+ +IEPGIY P
Sbjct: 297 DAGLA---------EYFVHRTGHGIGLCVHEEPYIVAGNELPLVAGMAFSIEPGIYFPGR 347
Query: 379 FSGPERFRGIGIRIEDEVLITETG 402
+ G RIED V++TE G
Sbjct: 348 W---------GARIEDIVVVTENG 362
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase
From Alteromonas Macleodii
Length = 451
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 122/304 (40%), Gaps = 59/304 (19%)
Query: 158 NLSRLTHEL---RWVKSPAELKLMRES---ASIGCQALLQTMLHSKSHPYEGLLAAKFEY 211
N R+ H L R K+ EL MRE+ A G +A Q KS L A
Sbjct: 145 NPDRVLHYLHYQRAYKTDYELDCMREANKLAVAGHKAAEQAFREGKSEFDINLAYAA--- 201
Query: 212 ECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKI-DDGDLVLMDVGCELHGYVSDMTRTW 270
+G + + +V +A+++HY + D + L+D G HGY +D+TRT+
Sbjct: 202 -ASRQGDNDVPYTSIVALNEHASILHYMQXDTVAPKESRSFLIDAGANYHGYAADITRTY 260
Query: 271 PPCGSFSSLEEALYDLILQTNKECLELC---MPGTSLLQIHHYSVGMLRKGLKEIGIVNS 327
G +S DLI +K L L PG + IH + + + L + G+VN
Sbjct: 261 AQEGVHNS--AMFRDLIQAVDKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGMVNL 318
Query: 328 DGTDP-------YNELNPTSIGHYLGMDVHDSSVVTYE------------------RPLE 362
T P P IGH+LG+ VHD + + R +E
Sbjct: 319 --TPPEIVEMGITRTFFPHGIGHFLGLQVHDVGGLVNDDRGTPKPAPDDHPFLRCTRMVE 376
Query: 363 PGVVITIEPGIYIP---------------LSFSGPERFRGI-GIRIEDEVLITETGYEVL 406
V TIEPG+Y +++ + ++ GIRIED +++ E +
Sbjct: 377 ARQVFTIEPGLYFIDSLLRDLKATPASKYINWDTIDAYKPFGGIRIEDNIIVHRDKNENM 436
Query: 407 TGSL 410
T L
Sbjct: 437 TRDL 440
>pdb|3L24|A Chain A, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|B Chain B, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|C Chain C, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L7G|A Chain A, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|B Chain B, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|C Chain C, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
Length = 517
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 108/294 (36%), Gaps = 57/294 (19%)
Query: 164 HELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKM-------R 216
H R K+ EL MRE+ I Q H + + K E+E +
Sbjct: 154 HYHRAYKTQYELACMREANKIAVQG------HKAAR--DAFFQGKSEFEIQQAYLLATQH 205
Query: 217 GAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDL-VLMDVGCELHGYVSDMTRTWPPCGS 275
+ +V N A++HY+ D+ L+D G +GY +D+TRT+ G
Sbjct: 206 SENDNPYGNIVALNENCAILHYTHFDRVAPATHRSFLIDAGANFNGYAADITRTYDFTGE 265
Query: 276 FSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPY-- 333
E L + Q + PG ++H + + L + IV+ +
Sbjct: 266 GEFAE--LVATMKQHQIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIVAK 323
Query: 334 ---NELNPTSIGHYLGMDVHD------------------SSVVTYERPLEPGVVITIEPG 372
+ P +GH++G+ VHD + R +E V TIEPG
Sbjct: 324 GITSTFFPHGLGHHIGLQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKIEANQVFTIEPG 383
Query: 373 IYIPLSFSG----PERFRGI------------GIRIEDEVLITETGYEVLTGSL 410
+Y S G + + I GIRIED +++ E E +T L
Sbjct: 384 LYFIDSLLGDLAATDNNQHINWDKVAELKPFGGIRIEDNIIVHEDSLENMTREL 437
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 100/268 (37%), Gaps = 52/268 (19%)
Query: 168 WVKSPAELKLMRESASIGCQALLQT-----------MLHSKSHPY---EGLLAAKFEYEC 213
WV++P ++ MR + I AL + L +H Y G + Y+
Sbjct: 46 WVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYK- 104
Query: 214 KMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPC 273
F N + H + I DGD+V +DV + G D T+ P
Sbjct: 105 --------GFPKSCSTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATF-PA 155
Query: 274 GSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPY 333
G + L D + + PG +L I ++ G Y
Sbjct: 156 GDVADEHRLLVDRTREATMRAINTVKPGRALSVIGR----VIESYANRFG---------Y 202
Query: 334 NELNPTSIGHYLGMDVHDSSVVT-YERP-----LEPGVVITIEPGIYIPL--------SF 379
N + + GH +G H+ VV Y++P ++PG+ TIEP I + +
Sbjct: 203 NVVRDFT-GHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGW 261
Query: 380 SGPERFRGIGIRIEDEVLITETGYEVLT 407
+ + R + E +L+T+TG E+LT
Sbjct: 262 TVVTKDRKWTAQFEHTLLVTDTGVEILT 289
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 102/263 (38%), Gaps = 42/263 (15%)
Query: 168 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVV 227
WV++P ++ MR + I AL + + G+ + + A+ +
Sbjct: 46 WVQTPEVIEKMRVAGRIAAGALAE----AGKAVAPGVTTDELDRIAHEYLVDNGAYPSTL 101
Query: 228 G--GGP-------NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSS 278
G G P N + H + I DGD+V +DV + G D T+ P G +
Sbjct: 102 GYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATF-PAGDVAD 160
Query: 279 LEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNP 338
L D + + PG +L I ++ G YN +
Sbjct: 161 EHRLLVDRTREATMRAINTVKPGRALSVIGR----VIESYANRFG---------YNVVRD 207
Query: 339 TSIGHYLGMDVHDSSVVT-YERP-----LEPGVVITIEPGIYIPL--------SFSGPER 384
+ GH +G H+ VV Y++P ++PG+ TIEP I + ++ +
Sbjct: 208 FT-GHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTK 266
Query: 385 FRGIGIRIEDEVLITETGYEVLT 407
R + E +L+T+TG E+LT
Sbjct: 267 DRKWTAQFEHTLLVTDTGVEILT 289
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 102/263 (38%), Gaps = 42/263 (15%)
Query: 168 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVV 227
WV++P ++ MR + I AL + + G+ + + A+ +
Sbjct: 40 WVQTPEVIEKMRVAGRIAAGALAE----AGKAVAPGVTTDELDRIAHEYLVDNGAYPSTL 95
Query: 228 G--GGP-------NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSS 278
G G P N + H + I DGD+V +DV + G D T+ P G +
Sbjct: 96 GYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATF-PAGDVAD 154
Query: 279 LEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNP 338
L D + + PG +L I ++ G YN +
Sbjct: 155 EHRLLVDRTREATMRAINTVKPGRALSVIGR----VIESYANRFG---------YNVVRD 201
Query: 339 TSIGHYLGMDVHDSSVVT-YERP-----LEPGVVITIEPGIYIPL--------SFSGPER 384
+ GH +G H+ VV Y++P ++PG+ TIEP I + ++ +
Sbjct: 202 FT-GHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTK 260
Query: 385 FRGIGIRIEDEVLITETGYEVLT 407
R + E +L+T+TG E+LT
Sbjct: 261 DRKWTAQFEHTLLVTDTGVEILT 283
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 102/263 (38%), Gaps = 42/263 (15%)
Query: 168 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVV 227
WV++P ++ MR + I AL + + G+ + + A+ +
Sbjct: 43 WVQTPEVIEKMRVAGRIAAGALAE----AGKAVAPGVTTDELDRIAHEYLVDNGAYPSTL 98
Query: 228 G--GGP-------NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSS 278
G G P N + H + I DGD+V +DV + G D T+ P G +
Sbjct: 99 GYKGFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATF-PAGDVAD 157
Query: 279 LEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNP 338
L D + + PG +L I ++ G YN +
Sbjct: 158 EHRLLVDRTREATMRAINTVKPGRALSVIGR----VIESYANRFG---------YNVVRD 204
Query: 339 TSIGHYLGMDVHDSSVVT-YERP-----LEPGVVITIEPGIYIPL--------SFSGPER 384
+ GH +G H+ VV Y++P ++PG+ TIEP I + ++ +
Sbjct: 205 FT-GHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEIWDDGWTVVTK 263
Query: 385 FRGIGIRIEDEVLITETGYEVLT 407
R + E +L+T+TG E+LT
Sbjct: 264 DRKWTAQFEHTLLVTDTGVEILT 286
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 50/196 (25%)
Query: 221 MAFNPVVGGGPNAAVIHYS---RNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFS 277
++F + GP A+IHY+ ++ + ++ L+D G + +D+TRT
Sbjct: 379 LSFPTISSTGPTGAIIHYAPVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRT-------- 430
Query: 278 SLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVG--------MLRKGLKEIGIVNSDG 329
++ KEC + G + + G R L + G+ G
Sbjct: 431 ----MHFETPTAYEKECFTYVLKGHIAVSAAVFPTGTKGHLLDSFARSALWDSGLDYLHG 486
Query: 330 TDPYNELNPTSIGHYLG--MDVHDSSV-VTY----ERPLEPGVVITIEPGIYIPLSFSGP 382
T GH +G ++VH+ ++Y + PLE G+++T EPG Y +F
Sbjct: 487 T-----------GHGVGSFLNVHEGPCGISYKTFSDEPLEAGMIVTDEPGYYEDGAF--- 532
Query: 383 ERFRGIGIRIEDEVLI 398
GIRIE+ VL+
Sbjct: 533 ------GIRIENVVLV 542
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 41/205 (20%)
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N V H ND+ + +GD+V +DV L G+ D +R + G + + L +
Sbjct: 76 NHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMY-YVGDVAIKPKRLIQVTYDAM 134
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSI-----GHYLG 346
+ +E+ PG L I + Y E + S+ GH +G
Sbjct: 135 MKGIEVVRPGAKLGDIGY-------------------AIQSYAEKHNYSVVRDYTGHGIG 175
Query: 347 MDVHDS-SVVTYER-----PLEPGVVITIEP----GIYIPL-----SFSGPERFRGIGIR 391
HD S++ Y R L+ G+ T+EP G Y + ++ R + + +
Sbjct: 176 RVFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQ 235
Query: 392 IEDEVLITETGYEVLTGSLPKEIKH 416
E + +T+ G+E+ T S PK++ +
Sbjct: 236 FEHTIGVTKDGFEIFTLS-PKKLDY 259
>pdb|4B28|A Chain A, Crystal Structure Of Dmsp Lyase Rddddp From Roseobacter
Denitrificans
Length = 470
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 356 TYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLT 407
Y+ PLEPG+ + +E I E I++ED+VLITE GYE LT
Sbjct: 415 AYDYPLEPGMTLCVEALI--------SEEGGDFSIKLEDQVLITEDGYENLT 458
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 40/196 (20%)
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N V H ND+ + +GD+V +DV L G+ D +R + G + + L +
Sbjct: 76 NHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMY-YVGDVAIKPKRLIQVTYDAM 134
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSI-----GHYLG 346
+ +E+ PG L I + Y E + S+ GH +G
Sbjct: 135 MKGIEVVRPGAKLGDIGY-------------------AIQSYAEKHNYSVVRDYTGHGIG 175
Query: 347 MDVHDS-SVVTYER-----PLEPGVVITIEP----GIYIPL-----SFSGPERFRGIGIR 391
HD S++ Y R L+ G+ T+EP G Y + ++ R + + +
Sbjct: 176 RVFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQ 235
Query: 392 IEDEVLITETGYEVLT 407
E + +T+ G+E+ T
Sbjct: 236 FEHTIGVTKDGFEIFT 251
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N V H + + I +GDLV +DV +GY +D ++ S +++ + D+
Sbjct: 71 NEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAF 130
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKG-LKEIGIVNSDGTDPYNELNPTSIGHYLGMDVH 350
+ + PGT L I R+ LK I + GH +G+ +H
Sbjct: 131 ENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLT---------------GHGVGLSLH 175
Query: 351 D--SSVVTYERP-----LEPGVVITIEPGIYIPLSF--SGPERF------RGIGIRIEDE 395
+ + V+ Y P L G+V+ IEP I SF G + + +IE
Sbjct: 176 EAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHT 235
Query: 396 VLITETGYEVLTGSLPKE 413
V++T+ G +LT + +E
Sbjct: 236 VIVTKDG-PILTTKIEEE 252
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 99/263 (37%), Gaps = 48/263 (18%)
Query: 166 LRWVKSPAELKLMRESA---SIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMA 222
+R +KS E ++R A IG A++ E L EYE + Q M
Sbjct: 154 MRMIKSAEEHVMIRHGARIADIGGAAVV-----------EALGDQVPEYEVALHATQAMV 202
Query: 223 ------FNPV--------VGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTR 268
F V G N H +K++ GD++ ++ + GY + + R
Sbjct: 203 RAIADTFEDVELMDTWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALER 262
Query: 269 TWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRK----GLKEIGI 324
T S L+ + ++ ++ L+L PG I + K + G
Sbjct: 263 TLF-LDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGY 321
Query: 325 VNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPER 384
+S GT + HY G + + LEPG+V+++EP I +P G
Sbjct: 322 GHSFGT----------LSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPEGLPGAG- 370
Query: 385 FRGIGIRIEDEVLITETGYEVLT 407
G R D +++ E G E +T
Sbjct: 371 ----GYREHDILIVNENGAENIT 389
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 99/263 (37%), Gaps = 48/263 (18%)
Query: 166 LRWVKSPAELKLMRESA---SIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMA 222
+R +KS E ++R A IG A++ E L EYE + Q M
Sbjct: 154 MRMIKSAEEHVMIRHGARIADIGGAAVV-----------EALGDQVPEYEVALHATQAMV 202
Query: 223 ------FNPV--------VGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTR 268
F V G N H +K++ GD++ ++ + GY + + R
Sbjct: 203 RAIADTFEDVELMDTWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALER 262
Query: 269 TWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRK----GLKEIGI 324
T S L+ + ++ ++ L+L PG I + K + G
Sbjct: 263 TLF-LDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGY 321
Query: 325 VNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPER 384
+S GT + HY G + + LEPG+V+++EP I +P G
Sbjct: 322 GHSFGT----------LSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPEGLPGAG- 370
Query: 385 FRGIGIRIEDEVLITETGYEVLT 407
G R D +++ E G E +T
Sbjct: 371 ----GYREHDILIVNENGAENIT 389
>pdb|1VS3|A Chain A, Crystal Structure Of The Trna Pseudouridine Synthase Trua
From Thermus Thermophilus Hb8
pdb|1VS3|B Chain B, Crystal Structure Of The Trna Pseudouridine Synthase Trua
From Thermus Thermophilus Hb8
Length = 249
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 96 AGVDAAPETFKAD--KAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFY 153
AGV A F D A P+ K+ E L ++ K+ +E A + +A +A Y
Sbjct: 53 AGVHALAMPFHVDVESAIPVEKVPEALNRLLPEDLKVVGAREVAPDFHARKDALWRAYRY 112
Query: 154 GAVRNLSR------LTHELRWVKSPAELKLMRESASI 184
R L R L H WV+ P +L+ M E+ S+
Sbjct: 113 ---RILVRPHPSPLLRHRALWVRRPLDLEAMEEALSL 146
>pdb|2VAM|A Chain A, Ftsz B. Subtilis
pdb|2VXY|A Chain A, The Structure Of Ftsz From Bacillus Subtilis At 1.7a
Resolution
Length = 382
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 268 RTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEI----- 322
R G S+++EA+ LI+ N LE+ T +L+ + +LR+G++ I
Sbjct: 143 RQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIA 202
Query: 323 --GIVNSDGTD 331
G++N D D
Sbjct: 203 TPGLINLDFAD 213
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 30/191 (15%)
Query: 232 NAAVIHYSRNDQKI-DDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQT 290
N V+H +K+ +GD+V +DVG G D T+ G + L + +
Sbjct: 84 NEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTY-IVGETDERGKELVRVTREV 142
Query: 291 NKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVH 350
++ +++ PG L + H +++ ++ +G +N + +GH +G ++H
Sbjct: 143 LEKAIKMIKPGIRLGDVSH----CIQETVESVG---------FNVIRD-YVGHGVGRELH 188
Query: 351 -DSSVVTYERP-----LEPGVVITIEPGI-----YIPLSFSGPERFRGIGIR---IEDEV 396
D + Y P L G+ + IEP + + + G G R E +
Sbjct: 189 EDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEHTI 248
Query: 397 LITETGYEVLT 407
LITE G E+LT
Sbjct: 249 LITENGAEILT 259
>pdb|2RHH|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Bound
Sulfate Ion
pdb|2RHJ|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Two
Sulfate Ions And Sodium Ion In The Nucleotide Pocket
pdb|2RHL|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp
pdb|2RHL|B Chain B, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp
pdb|2RHO|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp And Gtp-Gamma-S
pdb|2RHO|B Chain B, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp And Gtp-Gamma-S
Length = 325
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 268 RTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEI----- 322
R G S+++EA+ LI+ N LE+ T +L+ + +LR+G++ I
Sbjct: 133 RQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIA 192
Query: 323 --GIVNSDGTD 331
G++N D D
Sbjct: 193 TPGLINLDFAD 203
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 115/279 (41%), Gaps = 55/279 (19%)
Query: 169 VKSPAELKLMRESASI--GCQALLQTMLHSKSHPYE------------GLLAAKFEYECK 214
+KSP E+++M ES + L+T + ++ G +AA+ YE
Sbjct: 4 LKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYE-- 61
Query: 215 MRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCG 274
+ N + H + + DGDL+ +D+ +L G +SD C
Sbjct: 62 -------GYKYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISD------SCW 108
Query: 275 SFSSLEEA-LYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPY 333
S+ E D +++ K+ L L G Q+ + +G + ++ V +G
Sbjct: 109 SYVVGESTPEIDRLMEVTKKALYL---GIEQAQVGN-RIGDIGHAIQT--YVEGEGYGVV 162
Query: 334 NELNPTSIGHYLGMDVHDSSVVTYERP------LEPGVVITIEPGIYI--------PLSF 379
+ +GH +G +H+S ++ + L+ G+VITIEP + P +
Sbjct: 163 RDF----VGHGIGPTIHESPMIPHYGEAGKGLRLKEGMVITIEPMVNTGTWRMKMDPNGW 218
Query: 380 SGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEIKHIE 418
+ G+ + E + IT+ G +LT S +E+ ++E
Sbjct: 219 TAYTEDGGLSCQYEHSLAITKEGPRILT-SQGEELTYLE 256
>pdb|3CB5|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (form A)
pdb|3CB5|B Chain B, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (form A)
Length = 444
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 223 FNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTW--PPCGSFSSLE 280
+ P++ G + + + D + GD+VL +G Y S++ RT+ P S +
Sbjct: 253 YTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDP----DSEQ 308
Query: 281 EALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLR 316
+ Y ++ K+ E C G + I+ +G++R
Sbjct: 309 QKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIR 344
>pdb|3CB6|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (Form B)
Length = 444
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 223 FNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTW--PPCGSFSSLE 280
+ P++ G + + + D + GD+VL +G Y S++ RT+ P S +
Sbjct: 253 YTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDP----DSEQ 308
Query: 281 EALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLR 316
+ Y ++ K+ E C G + I+ +G++R
Sbjct: 309 QKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIR 344
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 84/222 (37%), Gaps = 37/222 (16%)
Query: 170 KSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGG 229
++P EL M + SI AL+ +K+ G+ + + + + A +G
Sbjct: 35 RTPGELDAMAAAGSIVGAALVAVRDAAKA----GVSTLELDQVAESVIREAGAVPSFLGY 90
Query: 230 GPNAAVIHYSRNDQKID----------DGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 279
A I S NDQ + DGDLV +D G L G+ D T+ G+
Sbjct: 91 HGFPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTF-AVGTVIPS 149
Query: 280 EEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKE----IGIVNSDGTDPYNE 335
+EAL + + + + +PG L + H R K+ GIV+ G
Sbjct: 150 DEALSEATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFGIVDGYG------ 203
Query: 336 LNPTSIGHYLGMDVHDSSVVTYERP------LEPGVVITIEP 371
GH +G +H + E L G V+ IEP
Sbjct: 204 ------GHGIGRSMHLDPFLPNEGAPGKGPLLAVGSVLAIEP 239
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 203 GLLAAKFE-YECKMRGAQRMAFNPVVGGGPN--AAVIHYSRNDQKIDDGDLVLMDVGCEL 259
G++ +F CK Q++ F+ G PN A ++ Y DDGD+VLM++ +L
Sbjct: 129 GIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYV-----ADDGDIVLMEIQDKL 183
Query: 260 HGYVSDMTRTW 270
M +W
Sbjct: 184 SAEWKPMKLSW 194
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 232 NAAVIHYS--RNDQK--IDDGDLVLMDVGCELHGYVSDMTRTW 270
N V H+S ++DQ + +GDLV +D+G + G+++++ T+
Sbjct: 76 NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTF 118
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 232 NAAVIHYS--RNDQK--IDDGDLVLMDVGCELHGYVSDMTRTW 270
N V H+S ++DQ + +GDLV +D+G + G+++++ T+
Sbjct: 90 NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTF 132
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 232 NAAVIHYS--RNDQK--IDDGDLVLMDVGCELHGYVSDMTRTW 270
N V H+S ++DQ + +GDLV +D+G + G+++++ T+
Sbjct: 83 NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTF 125
>pdb|1V0D|A Chain A, Crystal Structure Of Caspase-Activated Dnase (Cad)
Length = 329
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 246 DDGDLVLMDVGCELHGYVSDMTR 268
+D +L+L+ G HGYVSD+TR
Sbjct: 68 NDAELLLLTAGETWHGYVSDITR 90
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 48/201 (23%)
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTW--------PPCGSFSSLEEAL 283
N V H + + + GD++ +D+ G SD+ T+ P G L E
Sbjct: 171 NEIVCHGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEG--KELVETC 228
Query: 284 YDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGL---KEIGIVNSDGTDPYNELNPTS 340
Y ++ E ++ C PG + + ++G L K +V S
Sbjct: 229 YFSLM----EAIKKCKPG-----MFYKNIGTLIDAYVSKKNFSVVRSYS----------- 268
Query: 341 IGHYLGMDVHDSSVVTYERP------LEPGVVITIEP--------GIYIPLSFSGPERFR 386
GH +G H + V + + ++PG V TIEP + P ++
Sbjct: 269 -GHGVGKLFHSNPTVPHFKKNKAVGIMKPGHVFTIEPMINQGHYSDVLWPDQWTSATSDG 327
Query: 387 GIGIRIEDEVLITETGYEVLT 407
+ + E +LIT G E+LT
Sbjct: 328 KLSAQFEHTLLITNNGVEILT 348
>pdb|2GX5|A Chain A, N-terminal Gaf Domain Of Transcriptional Pleiotropic
Repressor Cody
pdb|2GX5|B Chain B, N-terminal Gaf Domain Of Transcriptional Pleiotropic
Repressor Cody
pdb|2GX5|C Chain C, N-terminal Gaf Domain Of Transcriptional Pleiotropic
Repressor Cody
pdb|2GX5|D Chain D, N-terminal Gaf Domain Of Transcriptional Pleiotropic
Repressor Cody
Length = 170
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 225 PVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHG 261
P++GGG + SR + +D DL+L + G + G
Sbjct: 125 PIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVG 161
>pdb|2B18|A Chain A, N-Terminal Gaf Domain Of Transcriptional Pleiotropic
Repressor Cody
Length = 164
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 225 PVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHG 261
P++GGG + SR + +D DL+L + G + G
Sbjct: 124 PIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVG 160
>pdb|2HGV|A Chain A, N-Terminal Gaf Domain Of Transcriptional Pleiotropic
Repressor Cody
Length = 164
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 225 PVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHG 261
P++GGG + SR + +D DL+L + G + G
Sbjct: 124 PIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVG 160
>pdb|1VFG|A Chain A, Crystal Structure Of Trna Nucleotidyltransferase Complexed
With A Primer Trna And An Incoming Atp Analog
pdb|1VFG|B Chain B, Crystal Structure Of Trna Nucleotidyltransferase Complexed
With A Primer Trna And An Incoming Atp Analog
Length = 390
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 85 SAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNL 144
+AH I K ++ A ET+ AYP + + D+I R + A+ NL
Sbjct: 63 TAHLKIGKLKLEFATARRETYPRPGAYPKVEPASLKEDLIRRDFTI-----NAMAISVNL 117
Query: 145 EAF-QKADFYGAVRNLS----RLTHELRWVKSPAEL 175
E + D++G +R+L R+ H + +++ P +
Sbjct: 118 EDYGTLIDYFGGLRDLKDKVIRVLHPVSFIEDPVRI 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,621,323
Number of Sequences: 62578
Number of extensions: 568372
Number of successful extensions: 1344
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1213
Number of HSP's gapped (non-prelim): 53
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)