RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013513
(441 letters)
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 292 bits (748), Expect = 7e-95
Identities = 157/445 (35%), Positives = 242/445 (54%), Gaps = 46/445 (10%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
++ +E+ RR+ LL + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 1 MTQQEFQRRRQALLAKMQPGSAALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPEAVL 60
Query: 70 VLSHECGLCMFMPETSAHDV-----------IWKGQIAGVDAAPETFKADKAYPMSKIQE 118
VL +T H V IW G+ G DAAPE D+A P S+I +
Sbjct: 61 VLIKS-------DDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALPFSEINQ 113
Query: 119 ILPDMIGRSSKLFHNQ-ETAVQ---TYTNLEAFQKADFYGAVRNLS---RLT------HE 165
L ++ ++H Q E A ++ LE +K G+ +NL+ LT HE
Sbjct: 114 QLYQLLNGLDVVYHAQGEYAYADEIVFSALEKLRK----GSRQNLTAPATLTDWRPWVHE 169
Query: 166 LRWVKSPAELKLMRESASIGCQALLQTMLHSKSHP--YEGLLAAKFEYECKMRGAQRMAF 223
+R KSP E+ ++R + I A + M K P +E L + +E GA+ ++
Sbjct: 170 MRLFKSPEEIAVLRRAGEISALAHTRAM--EKCRPGMFEYQLEGEIHHEFNRHGARYPSY 227
Query: 224 NPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEAL 283
N +VG G N ++HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +
Sbjct: 228 NTIVGSGENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREI 287
Query: 284 YDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSD-----GTDPYNELNP 338
YD++L++ + L L PGTS+ ++ V ++ GL ++GI+ D + +
Sbjct: 288 YDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFM 347
Query: 339 TSIGHYLGMDVHDSSV--VTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEV 396
+ H+LG+DVHD V R LEPG+V+T+EPG+YI PE++RGIGIRIED++
Sbjct: 348 HGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDI 407
Query: 397 LITETGYEVLTGSLPKEIKHIESLL 421
+ITETG E LT S+ K+ IE+L+
Sbjct: 408 VITETGNENLTASVVKKPDEIEALM 432
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 281 bits (721), Expect = 3e-93
Identities = 111/244 (45%), Positives = 146/244 (59%), Gaps = 11/244 (4%)
Query: 175 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAA 234
++LMR++ I +A M S+ E L A+FEYE + RGA R+A++ +V G NAA
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGA-RLAYSYIVAAGSNAA 59
Query: 235 VIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKEC 294
++HY NDQ + DGDLVL+D G E GY SD+TRT+P G F+ + LY+ +L K
Sbjct: 60 ILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAA 119
Query: 295 LELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDP-----YNELNPTSIGHYLGMDV 349
+ C PG S IH + +L +GLKE+GI+ D + Y + P +GHYLG+DV
Sbjct: 120 IAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDV 179
Query: 350 HDSSVVTYE----RPLEPGVVITIEPGIYIPLSF-SGPERFRGIGIRIEDEVLITETGYE 404
HD RPLEPG+VITIEPGIY PE FRG GIRIED+VL+TE G E
Sbjct: 180 HDVGGYLRYLRRARPLEPGMVITIEPGIYFIPDLLDVPEYFRGGGIRIEDDVLVTEDGPE 239
Query: 405 VLTG 408
LT
Sbjct: 240 NLTR 243
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 209 bits (533), Expect = 2e-63
Identities = 113/398 (28%), Positives = 183/398 (45%), Gaps = 37/398 (9%)
Query: 28 ENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGG---VAVLSHECG-LCMFMPE 83
E + + +N+ Y+TG G A+L G +F+
Sbjct: 9 EYRARLARLRELMEEAGLDALLLTSPSNFYYLTGFDAFGFERLQALLVPAEGEPVLFVRG 68
Query: 84 TSAHDVIWKGQIAGVDAAPETFKADKAY--PMSKIQEILPDMIGRSSKLFHNQETAVQTY 141
I + E ++ D+ P+ + +L ++ ++ + T
Sbjct: 69 RDEEAAKETSWIKLEN--VEVYEDDEDPAAPLDLLGALLEELGLAGKRIGIESASIFLTL 126
Query: 142 TNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPY 201
E Q A + + S L LR +KSPAE+ +R++A I AL + +
Sbjct: 127 AAFERLQAALPRAELVDASDLVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMT 186
Query: 202 EGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHG 261
E +AA+ EY + GA+ +F+ +V G NAA+ HY+ +D+K+ DGDLVL+D+G +G
Sbjct: 187 EAEIAAELEYALRKGGAEGPSFDTIVASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNG 246
Query: 262 YVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKE 321
Y SD+TRT+ P G S + +Y+ +L+ + + PG + ++ R+ L++
Sbjct: 247 YCSDITRTF-PIGKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVD----AAARQVLEK 301
Query: 322 IGIVNSDGTDPYNELNPTSIGHYLG--MDVHD---SSVVTYERPLEPGVVITIEPGIYIP 376
G Y GH +G +DVH+ + LEPG+V +IEPGIYIP
Sbjct: 302 AG---------YGLYFLHGTGHGVGFVLDVHEHPQYLSPGSDTTLEPGMVFSIEPGIYIP 352
Query: 377 LSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEI 414
G G+RIED VL+TE G+EVLT +PKE+
Sbjct: 353 ---------GGGGVRIEDTVLVTEDGFEVLT-RVPKEL 380
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 175 bits (445), Expect = 1e-52
Identities = 86/230 (37%), Positives = 119/230 (51%), Gaps = 27/230 (11%)
Query: 176 KLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYEC-KMRGAQRMAFNPVVGGGPNAA 234
+LMR++A I AL + + E LAA+ E GA+ AF P+V GPNAA
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGARGPAFPPIVASGPNAA 60
Query: 235 VIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKEC 294
V HY +D+ + DGDLVL+DVG E GY SD+TRT+ G + + LY+ +L+ +
Sbjct: 61 VPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTF-VVGKPTPEQRELYEAVLEAQEAA 119
Query: 295 LELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHD--- 351
+ PG + + + +L +G Y E P +GH +G+DVHD
Sbjct: 120 IAAVKPGVTGGDVDAAAREVLEEG-------------GYGEYFPHGLGHGIGLDVHDEGP 166
Query: 352 -SSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITE 400
S +R LEPG+V TIEPGIY P G+RIED VL+TE
Sbjct: 167 YISRGGNDRVLEPGMVFTIEPGIYFI-----PGWG---GVRIEDTVLVTE 208
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 155 bits (395), Expect = 3e-45
Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 33/235 (14%)
Query: 175 LKLMRESASIGCQALLQTMLHSKSHPYEGL----LAAKFEYECKMRGAQRMAFNPVVGGG 230
++L+R++A I +A G+ +AA+ EY + GA+ +F+ +V G
Sbjct: 1 IELLRKAARIADKA----FEELLEFIKPGMTEREVAAELEYFMRKLGAEGPSFDTIVASG 56
Query: 231 PNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQT 290
PN+A+ H +D+KI++GDLVL+D G GY SD+TRT G S + +Y+++L+
Sbjct: 57 PNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTV-AVGEPSDELKEIYEIVLEA 115
Query: 291 NKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVH 350
+ ++ PG + ++ R ++E G Y E GH +G++VH
Sbjct: 116 QQAAIKAVKPGVTAKEVDK----AARDVIEEAG---------YGEYFIHRTGHGVGLEVH 162
Query: 351 D--SSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGY 403
+ + LE G+V TIEPGIYI P + G+RIED+VL+TE G
Sbjct: 163 EAPYISPGSDDVLEEGMVFTIEPGIYI------PGKG---GVRIEDDVLVTEDGC 208
>gnl|CDD|218491 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain. This domain
is structurally very similar to the creatinase
N-terminal domain (pfam01321). However, little or no
sequence similarity exists between the two families.
Length = 134
Score = 147 bits (374), Expect = 3e-43
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
I A+E+ RR RLL +LP NS AIL APEK YP+RQD+++ Y+TG +P V
Sbjct: 1 IPAKEFAERRARLLALLPPNSAAILPGAPEKYRNRDTEYPFRQDSDFYYLTGFNEPDAVL 60
Query: 70 VLSHECG--LCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRS 127
VL +F+P IW G+ G + A E F D+AYP+ ++ EILP+++ +
Sbjct: 61 VLKDGDTGKSTLFVPPKDPEYEIWDGRRPGPEEAKEKFGVDEAYPIDELDEILPELLEGA 120
Query: 128 SKLFHNQET 136
+++ T
Sbjct: 121 ETVYYALGT 129
>gnl|CDD|198079 smart01011, AMP_N, Aminopeptidase P, N-terminal domain. This
domain is structurally very similar to the creatinase
N-terminal domain. However, little or no sequence
similarity exists between the two families.
Length = 135
Score = 131 bits (333), Expect = 3e-37
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
I A EY +RR+RL L SVA+L A PEK+ ++ YP+RQD+++ Y+TG +P V
Sbjct: 1 IPAAEYAARRRRLAAKLFPGSVAVLPAGPEKVRSNDTDYPFRQDSDFYYLTGFDEPDAVL 60
Query: 70 VL-----SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI 124
VL + +F+P D +W G G++ A E F D+ YP+ ++ +LP ++
Sbjct: 61 VLDPSGGGGK--STLFVPPRDPEDELWDGPRLGLEEAKEKFGVDEVYPIDELDAVLPGLL 118
Query: 125 GRSSKLFHNQET 136
+ +++
Sbjct: 119 AGAGTVYYLLGR 130
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 119 bits (299), Expect = 2e-31
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 26/231 (11%)
Query: 175 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAA 234
+ +R++A I A+ + E +AA E + G A +VG G A
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGY-PAGPTIVGSGARTA 59
Query: 235 VIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKEC 294
+ HY +D+++ +GDLVL+D+G GY +D+TRT+ G S + LY+ + + +
Sbjct: 60 LPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTF-VIGEPSDEQRELYEAVREAQEAA 118
Query: 295 LELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSV 354
L PG + ++ R+ L+E G GH +G+++H+ V
Sbjct: 119 LAALRPGVTAEEVDA----AAREVLEEHG---------LGPNFGHRTGHGIGLEIHEPPV 165
Query: 355 VTYE--RPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGY 403
+ LEPG+V +EPG+Y+P G G+RIED VL+TE G
Sbjct: 166 LKAGDDTVLEPGMVFAVEPGLYLPG---------GGGVRIEDTVLVTEDGP 207
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 109 bits (274), Expect = 1e-26
Identities = 74/255 (29%), Positives = 125/255 (49%), Gaps = 29/255 (11%)
Query: 166 LRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNP 225
LR +K+P E++ +R + I + ++ E +AA+ E+ + +GA++ +F+
Sbjct: 124 LRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFDT 183
Query: 226 VVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEE---- 281
+V G A+ H +D+ + G+ V +D G GY SDMTRT G S E
Sbjct: 184 IVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLF 243
Query: 282 ALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSI 341
+Y ++LQ + PG Q+ + R+ + E G Y + +
Sbjct: 244 NVYQIVLQAQLAAISAIRPGVRCQQVDDAA----RRVITEAG---------YGDYFGHNT 290
Query: 342 GHYLGMDVHDSSVV--TYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLIT 399
GH +G++VH+ L+PG+++T+EPGIY+P +G G+RIED VL+T
Sbjct: 291 GHAIGIEVHEDPRFSPRDTTTLQPGMLLTVEPGIYLPG--------QG-GVRIEDVVLVT 341
Query: 400 ETGYEVLTGSLPKEI 414
G EVL ++PK +
Sbjct: 342 PQGAEVLY-AMPKTV 355
>gnl|CDD|237444 PRK13607, PRK13607, proline dipeptidase; Provisional.
Length = 443
Score = 104 bits (261), Expect = 2e-24
Identities = 87/302 (28%), Positives = 125/302 (41%), Gaps = 78/302 (25%)
Query: 164 HELRWVKSPAELKLMRES---ASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMR---- 216
H R K+ EL MRE+ A G +A E A E++ +
Sbjct: 156 HYHRAYKTDYELACMREAQKIAVAGHRA-----------AKEAFRAGMSEFDINLAYLTA 204
Query: 217 ---GAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDL-VLMDVGCELHGYVSDMTRTWPP 272
+ + +V +AAV+HY++ D + L+D G E +GY +D+TRT+
Sbjct: 205 TGQRDNDVPYGNIVALNEHAAVLHYTKLDHQAPAEMRSFLIDAGAEYNGYAADITRTY-- 262
Query: 273 CGSFSSLEEALY-DLILQTNKECLELC---MPGTSLLQIH---HYSV-GMLRK-----GL 319
++ E+ + LI NKE L L PG S + +H H + +LRK GL
Sbjct: 263 ----AAKEDNDFAALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTGL 318
Query: 320 KEIGIVNSDGTDPYNELNPTSIGHYLGMDVHD---------------SSVVTY---ERPL 361
E +V T P+ P +GH LG+ VHD Y R L
Sbjct: 319 SEEAMVEQGITSPFF---PHGLGHPLGLQVHDVAGFMQDDRGTHLAAPEKHPYLRCTRVL 375
Query: 362 EPGVVITIEPGIYIPLSFSGP----ERFRGI------------GIRIEDEVLITETGYEV 405
EPG+V+TIEPG+Y S P + GIRIED V++ E G E
Sbjct: 376 EPGMVLTIEPGLYFIDSLLAPLREGPFSKHFNWQKIDALKPFGGIRIEDNVVVHENGVEN 435
Query: 406 LT 407
+T
Sbjct: 436 MT 437
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 73.7 bits (182), Expect = 4e-15
Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 42/212 (19%)
Query: 205 LAAKFEYECKMRGAQRM----AFNPVVGGGPNAAVIHYSRNDQ---KIDDGDLVLMDVGC 257
A K E R Q+ +F+ + G GPN A++HYS ++ KI L L+D G
Sbjct: 35 AADKLEE---FRRQQKGYVGLSFDTISGFGPNGAIVHYSPTEESNRKISPDGLYLIDSGG 91
Query: 258 ELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMP-GT--SLLQIHHYSVGM 314
+ +D+TRT G ++ ++ Y L+L+ + P GT S L +
Sbjct: 92 QYLDGTTDITRTVH-LGEPTAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDA------L 144
Query: 315 LRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYER----PLEPGVVITIE 370
R+ L + G+ GT +G +L VH+ PL+ G++++ E
Sbjct: 145 ARQPLWKAGLDYGHGTG-------HGVGSFLN--VHEGPQSISPAPNNVPLKAGMILSNE 195
Query: 371 PGIYIPLSFSGPERFRGIGIRIEDEVLITETG 402
PG Y + GIRIE+ VL+ E
Sbjct: 196 PGYYKEGKY---------GIRIENLVLVVEAE 218
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 58.5 bits (142), Expect = 1e-09
Identities = 53/226 (23%), Positives = 85/226 (37%), Gaps = 50/226 (22%)
Query: 169 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVG 228
+KSP E++ +R++ + + L + G+ + + K + A +G
Sbjct: 3 LKSPDEIEKIRKAGRLAAEVLE----ELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLG 58
Query: 229 --GGP-------NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 279
G P N VIH + + + DGD+V +DVG GY D +T+ G S
Sbjct: 59 YYGFPGSVCISVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTF-LVGKISPE 117
Query: 280 EEALYDLILQTNKECL----ELCMPGTSLLQ----IHHYSVGMLRKGLKEIGIVNSDGTD 331
E L L+ +E L E PG + + I Y + G
Sbjct: 118 AEKL----LECTEESLYKAIEEAKPGNRIGEIGAAIQKY--------------AEAKGFS 159
Query: 332 PYNELNPTSIGHYLGMDVHDS-SVVTYERP-----LEPGVVITIEP 371
E GH +G H+ + Y + L+ G+V TIEP
Sbjct: 160 VVREY----CGHGIGRKFHEEPQIPNYGKKFTNVRLKEGMVFTIEP 201
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 58.0 bits (141), Expect = 2e-09
Identities = 46/197 (23%), Positives = 73/197 (37%), Gaps = 40/197 (20%)
Query: 232 NAAVIHYSRNDQK-IDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQT 290
N V H D+K + +GD+V +DVG + GY+ D T+ + + +L+
Sbjct: 73 NEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFV----VGEVSDEDAKRLLEA 128
Query: 291 NKECLELCM----PGTSLLQIHHYSVGMLRKGLKEIG-IVNSDGTDPYNELNPTSIGHYL 345
KE L + PG L I I S G L GH +
Sbjct: 129 TKEALYAGIEAVKPGARLGDIGR-----------AIQEYAESRGFSVVRNL----TGHGI 173
Query: 346 GMDVHDSSVV------TYERPLEPGVVITIEP------GIYIPLSFSG---PERFRGIGI 390
G ++H+ + L+ G+V IEP G + + +
Sbjct: 174 GRELHEEPSIPNYGKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPSDRWTLVTKDGSLSA 233
Query: 391 RIEDEVLITETGYEVLT 407
+ E V++TE G E+LT
Sbjct: 234 QFEHTVIVTEDGCEILT 250
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 58.9 bits (142), Expect = 2e-09
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 36/254 (14%)
Query: 162 LTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRM 221
L +E+R +KSP E++ +R+SA I + + L A F+
Sbjct: 170 LFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNF 229
Query: 222 A-FNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLE 280
+ FN + G + I K+ GDL+ D G ++ GY +D+ RT+ G L
Sbjct: 230 SRFNLISVGDNFSPKIIADTTPAKV--GDLIKFDCGIDVAGYGADLARTF-VLGEPDKLT 286
Query: 281 EALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTS 340
+ +YD I ++ L + PG L + ++ +++ G YN
Sbjct: 287 QQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTS----------GLPHYNR---GH 333
Query: 341 IGH----YLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIG---IRIE 393
+GH +LG++ PG+V+++E Y GIG I +E
Sbjct: 334 LGHGDGVFLGLEEVPFVSTQATETFCPGMVLSLETPYY------------GIGVGSIMLE 381
Query: 394 DEVLITETGYEVLT 407
D +LIT++G+E L+
Sbjct: 382 DMILITDSGFEFLS 395
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 56.3 bits (137), Expect = 5e-09
Identities = 61/209 (29%), Positives = 83/209 (39%), Gaps = 67/209 (32%)
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N V H +D+ + DGD+V +DVG EL GY D RT+ G S EEA +++
Sbjct: 63 NEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTF-IVGEVS--EEAKK--LVEVT 117
Query: 292 KECLEL----CMPGTSLLQI----------HHYSVGMLRKGLKEIGIVNSDGTDPYNELN 337
+E L PG + I + YSV ++E G
Sbjct: 118 EEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSV------VREFG-------------- 157
Query: 338 PTSIGHYLGMDVH-DSSVVTYERP-----LEPGVVITIEPGIYIPLSFSGPERFR----G 387
GH +G H + + Y RP L+PG+V TIEP I G G
Sbjct: 158 ----GHGIGRKFHEEPQIPNYGRPGTGPKLKPGMVFTIEPMI-----NLGTYEVVTLPDG 208
Query: 388 IGIRIEDE---------VLITETGYEVLT 407
+ +D VLITE G E+LT
Sbjct: 209 WTVVTKDGSLSAQFEHTVLITEDGPEILT 237
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 55.9 bits (136), Expect = 7e-09
Identities = 51/210 (24%), Positives = 76/210 (36%), Gaps = 65/210 (30%)
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N V H +D+ + +GD+V +DV GY D +RT+ G S ++ L +
Sbjct: 73 NEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTF-GVGEISPEDKRL----CEVT 127
Query: 292 KECLEL----CMPGTSLLQI----------HHYSVGMLRKGLKEIGIVNSDGTDPYNELN 337
KE L L PG L I +SV ++E
Sbjct: 128 KEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSV------VREYC-------------- 167
Query: 338 PTSIGHYLGMDVHDS-SVVTYERP-----LEPGVVITIEPGIYIPLSFSGPE-------- 383
GH +G H+ + Y P L+ G+V TIEP I + E
Sbjct: 168 ----GHGIGRKFHEEPQIPHYGAPGDGPVLKEGMVFTIEPMI----NAGKREVKTLKDGW 219
Query: 384 ----RFRGIGIRIEDEVLITETGYEVLTGS 409
+ + + E V +TE G E+LT
Sbjct: 220 TVVTKDGSLSAQYEHTVAVTEDGPEILTLR 249
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 52.1 bits (125), Expect = 2e-07
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 35/193 (18%)
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N + H ND + +GD++ +DV C + GY D +R G S +++ + Q +
Sbjct: 113 NEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRM-VMIGEVSEIKK----KVCQAS 167
Query: 292 KECLELCMPGTSLLQIHHYSVGMLRKG--LKEIGIVNSDGTDPYN-ELNPTSIGHYLGMD 348
ECL + ++ +L+ G L EIG V + D Y + +GH +G+
Sbjct: 168 LECL-------------NAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQFVGHGVGIK 214
Query: 349 VHDSSVVTYER-----PLEPGVVITIEP--------GIYIPLSFSGPERFRG-IGIRIED 394
H++ V + R PL PG++ TIEP G+ P++ + E
Sbjct: 215 FHENPYVPHHRNSSKIPLAPGMIFTIEPMINVGKKEGVIDPINHWEARTCDNQPSAQWEH 274
Query: 395 EVLITETGYEVLT 407
+LITETGYE+LT
Sbjct: 275 TILITETGYEILT 287
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 49.7 bits (118), Expect = 2e-06
Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 29/259 (11%)
Query: 160 SRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ 219
S + +ELR +KSP E+K +R+SA I + + + L A ++ +
Sbjct: 169 SSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSET 228
Query: 220 RMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 279
+ ++ G + + N K GDL+ D G ++ GY +D+ RT+ G +
Sbjct: 229 HFSRFHLISVGADFSPKLIPSN-TKACSGDLIKFDCGVDVDGYGADIARTF-VVGEPPEI 286
Query: 280 EEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPT 339
+Y I ++ L + PG + + ++ +++K G YN
Sbjct: 287 TRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKK----------SGLPNYNR---G 333
Query: 340 SIGH----YLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDE 395
+GH +LG++ G+V+++E Y + I IED
Sbjct: 334 HLGHGNGVFLGLEESPFVSTHATESFTSGMVLSLETPYY---------GYNLGSIMIEDM 384
Query: 396 VLITETGYEVLTGSLPKEI 414
+LI + G E L+ LP+++
Sbjct: 385 ILINKEGIEFLS-KLPRDL 402
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 48.9 bits (116), Expect = 2e-06
Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 29/259 (11%)
Query: 160 SRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQ 219
S + +ELR +KSP E+K +R+SA I + + + L A ++ +
Sbjct: 86 SSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSET 145
Query: 220 RMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 279
+ ++ G + + N K GDL+ D G ++ GY +D+ RT+ G +
Sbjct: 146 HFSRFHLISVGADFSPKLIPSN-TKACSGDLIKFDCGVDVDGYGADIARTF-VVGEPPEI 203
Query: 280 EEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPT 339
+Y I ++ L + PG + + ++ +++K G YN
Sbjct: 204 TRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKK----------SGLPNYNR---G 250
Query: 340 SIGH----YLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDE 395
+GH +LG++ G+V+++E Y + I IED
Sbjct: 251 HLGHGNGVFLGLEESPFVSTHATESFTSGMVLSLETPYY---------GYNLGSIMIEDM 301
Query: 396 VLITETGYEVLTGSLPKEI 414
+LI + G E L+ LP+++
Sbjct: 302 ILINKEGIEFLS-KLPRDL 319
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 40.6 bits (96), Expect = 7e-04
Identities = 63/291 (21%), Positives = 99/291 (34%), Gaps = 97/291 (33%)
Query: 168 WVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKF-----EYECKMRGAQRMA 222
+KSP EL+ MR+ I AL + M P G+ + + + GA +
Sbjct: 9 EIKSPRELEKMRKIGRIVATAL-KEMG-KAVEP--GMTTKELDRIAEKRLEEH-GA-IPS 62
Query: 223 F---------------NPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMT 267
V G P VI DGDLV +DV L GY D
Sbjct: 63 PEGYYGFPGSTCISVNEEVAHGIPGPRVIK---------DGDLVNIDVSAYLDGYHGDT- 112
Query: 268 RTWPPCGSFS--SLEEALYDLILQTNKECLELCM----PGTSLLQI----HHYSVGMLRK 317
+F+ + E L + +E L + G L I +
Sbjct: 113 -----GITFAVGPVSEEAEKLC-RVAEEALWAGIKQVKAGRPLNDIGRAIEDF------- 159
Query: 318 GLKEIGIVNSDGTDPYNEL-NPTSIGHYLGMDVHD--SSVVTYERP-----LEPGVVITI 369
+G Y+ + + T GH +G +H+ S ++TY P L PG+ + +
Sbjct: 160 -------AKKNG---YSVVRDLT--GHGVGRSLHEEPSVILTYTDPLPNRLLRPGMTLAV 207
Query: 370 EPGIYIPLSFSGPERFRGIGIR-------------IEDEVLITETGYEVLT 407
EP + + G + + E V++T G E+LT
Sbjct: 208 EPFLNL-----GAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTRDGPEILT 253
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 39.5 bits (92), Expect = 0.003
Identities = 63/262 (24%), Positives = 110/262 (41%), Gaps = 44/262 (16%)
Query: 167 RWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL----LAAKFEYECKMRGAQRM- 221
R VKSP E+ MR +A I + + + P G+ L A+ Y+ +RGA
Sbjct: 156 RAVKSPTEIAYMRIAARI--VENMHQRIFERIEP--GMRKCDLVAEI-YDAGIRGADGFG 210
Query: 222 ----AFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRT---WPPCG 274
A P++ G +A+ H + +D + G+ ++ Y ++RT P
Sbjct: 211 GDYPAIVPLLPSGADASAPHLTWDDSPMKKGEGTFFEIAGCYKRYHCPLSRTVFLGKPTQ 270
Query: 275 SFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTD-PY 333
+F E+A +L+ + L PG + I + K LK+ GI T P
Sbjct: 271 AFLDAEKA----VLEGMEAGLAAAKPGNTCEDI---ANAFF-KVLKKYGIHKDSRTGYPI 322
Query: 334 NELNPTSIGH-YLGMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRI 392
P G + + D++V L+PG+ G+++ G+ I
Sbjct: 323 GLSYPPDWGERTMSLRPGDNTV------LQPGMTFHFMTGLWM----------EDWGLEI 366
Query: 393 EDEVLITETGYEVLTGSLPKEI 414
+ +LITETG E L+ ++P+++
Sbjct: 367 TESILITETGVECLS-NVPRQL 387
>gnl|CDD|238524 cd01091, CDC68-like, Related to aminopeptidase P and aminopeptidase
M, a member of this domain family is present in cell
division control protein 68, a transcription factor.
Length = 243
Score = 38.5 bits (90), Expect = 0.003
Identities = 38/198 (19%), Positives = 83/198 (41%), Gaps = 27/198 (13%)
Query: 221 MAFNPVVGGGPNAAVIHYSRNDQK--IDDGDLVLMDVGCELHGYVSDMTRTW---PPCGS 275
+ P++ G N ++ S + K G +++ +G Y S++ RT+ P
Sbjct: 63 WCYPPIIQSGGNYDLLKSSSSSDKLLYHFG-VIICSLGARYKSYCSNIARTFLIDP---- 117
Query: 276 FSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNE 335
+S ++ Y+ +L +E L+ PG L ++ ++ ++K E
Sbjct: 118 -TSEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKKKPE-----------LEP 165
Query: 336 LNPTSIGHYLGMDVHDSSVV---TYERPLEPGVVITIEPGIY-IPLSFSGPERFRGIGIR 391
++G +G++ +SS++ +R L+ G+V + G + + + +
Sbjct: 166 NFTKNLGFGIGLEFRESSLIINAKNDRKLKKGMVFNLSIGFSNLQNPEPKDKESKTYALL 225
Query: 392 IEDEVLITETG-YEVLTG 408
+ D +L+TE VLT
Sbjct: 226 LSDTILVTEDEPAIVLTN 243
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea.
Length = 228
Score = 38.3 bits (89), Expect = 0.004
Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 20/183 (10%)
Query: 230 GPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQ 289
G N H ++K+ GD++ ++ + GY + + RT S +++ +
Sbjct: 62 GINTDGAHNPVTNRKVQRGDILSLNCFPMIAGYYTALERTLF-LDEVSDAHLKIWEANVA 120
Query: 290 TNKECLELCMPGTSLLQIHHYSVGMLRK----GLKEIGIVNSDGTDPYNELNPTSIGHYL 345
++ LEL PG I M R+ + G +S G + HY
Sbjct: 121 VHERGLELIKPGARCKDIAAELNEMYREHDLLRYRTFGYGHSFGV----------LSHYY 170
Query: 346 GMDVHDSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEV 405
G + + LEPG+V+++EP I +P G G R D ++I E G E
Sbjct: 171 GREAGLELREDIDTVLEPGMVVSMEPMIMLPEGQPGAG-----GYREHDILVINENGAEN 225
Query: 406 LTG 408
+TG
Sbjct: 226 ITG 228
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 38.8 bits (90), Expect = 0.006
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 248 GDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQI 307
GD+VL+ +G +GY S+M+RT S ++ Y+ + K L L PGT I
Sbjct: 270 GDVVLLSIGIRYNGYCSNMSRTI--LTDPDSEQQKNYEFLYMLQKYILGLVRPGTDSGII 327
Query: 308 HHYSVGMLRKGLKEIG 323
+ + + E+G
Sbjct: 328 YSEAEKYISSNGPELG 343
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 36.7 bits (85), Expect = 0.020
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 49/204 (24%)
Query: 232 NAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTN 291
N + H + +K++DGD+V +DV G D+ T+ +++EA L+ +
Sbjct: 205 NEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDLNETF----FVGNVDEASRQLV-KCT 259
Query: 292 KECLE----LCMPGTSLLQIHHYSVGMLRKGLKEIG-IVNSDGTDPYNELNPTSIGHYLG 346
ECLE + PG +E+G ++N T + + GH +G
Sbjct: 260 YECLEKAIAIVKPGVR---------------YREVGEVINRHATMSGLSVVKSYCGHGIG 304
Query: 347 MDVHDS-SVVTYERP-----LEPGVVITIEPGIYIPLSFSGPERFR----------GIGI 390
H + ++ Y R ++ G V TIEP I +G R R G
Sbjct: 305 ELFHCAPNIPHYARNKAVGVMKAGQVFTIEPMIN-----AGVWRDRMWPDGWTAVTADGK 359
Query: 391 R---IEDEVLITETGYEVLTGSLP 411
R E +L+TETG EVLT LP
Sbjct: 360 RSAQFEHTLLVTETGVEVLTARLP 383
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 34.0 bits (78), Expect = 0.11
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 25/148 (16%)
Query: 232 NAAVIHYSRN---DQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL----EEALY 284
N H++ DGD+V +D+G + GY++D T + +L ++ALY
Sbjct: 59 NECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITVDLGDQYDNLVKAAKDALY 118
Query: 285 DLILQTNKECLELCMPGTSLLQ-IHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGH 343
I + + + G ++ + I Y G+K I + PY SI +
Sbjct: 119 TAIKEIRAG-VRVGEIGKAIQEVIESY-------GVKPISNLTGHSMAPYRLHGGKSIPN 170
Query: 344 YLGMDVHDSSVVTYERPLEPGVVITIEP 371
D LE G V+ IEP
Sbjct: 171 VKERDTTK---------LEEGDVVAIEP 189
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 33.1 bits (76), Expect = 0.20
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 231 PNAAVIHYS----RNDQKIDDGDLVLMDVGCELHGYVSDMTRT 269
N V H+S + DGD+V +D+GC + GY++ + T
Sbjct: 65 VNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHT 107
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 33.2 bits (77), Expect = 0.21
Identities = 42/156 (26%), Positives = 59/156 (37%), Gaps = 45/156 (28%)
Query: 233 AAVIHY--SRNDQK-IDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL----EEALYD 285
AA HY S D++ +GD+V +D+G + GY++D T G + L EEAL
Sbjct: 59 AA--HYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLGGKYEDLVEASEEALEA 116
Query: 286 LILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIG-----IVNSDGTDPYNELNPTS 340
I E+ PG S + EIG + S G P L
Sbjct: 117 AI--------EVVRPGVS---------------VGEIGRVIEETIRSYGFKPIRNLTGHG 153
Query: 341 IGHYLGMDVHDSSVV-----TYERPLEPGVVITIEP 371
+ Y ++H + LE G V IEP
Sbjct: 154 LERY---ELHAGPSIPNYDEGGGVKLEEGDVYAIEP 186
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 30.7 bits (70), Expect = 1.3
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 35/148 (23%)
Query: 237 HYSRN---DQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKE 293
HY+ N D + +GD+V +D G + GY++D T F YD +L+ KE
Sbjct: 60 HYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTV----DFDP----KYDDLLEAAKE 111
Query: 294 CLELCM----PGTSLLQIHHYSVGMLRKGLKEIG-IVNSDGTDPYNELNPTSIGHYLGMD 348
L + P L +I G + I ++ S G P L SI Y
Sbjct: 112 ALNAAIKEAGPDVRLGEI-----G------EAIEEVIESYGFKPIRNLTGHSIERY---R 157
Query: 349 VHDS-SVVTYERP----LEPGVVITIEP 371
+H S+ + LE G V IEP
Sbjct: 158 LHAGKSIPNVKGGEGTRLEEGDVYAIEP 185
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 30.6 bits (69), Expect = 1.8
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 231 PNAAVIHYS--RNDQK--IDDGDLVLMDVGCELHGYVSDMTRT 269
N V H+S ++DQ + +GD+V +D+GC + G+++ + T
Sbjct: 83 VNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHT 125
>gnl|CDD|226044 COG3513, COG3513, Predicted CRISPR-associated nuclease, contains
McrA/HNH-nuclease and RuvC-like nuclease domain [Defense
mechanisms].
Length = 1088
Score = 30.3 bits (68), Expect = 2.5
Identities = 36/150 (24%), Positives = 53/150 (35%), Gaps = 17/150 (11%)
Query: 2 KEGEITPGISAEEYIS-RRKRLLEILPENSVAILAAAPEKMMTDVVPYP-----YRQDAN 55
K G+ G A ++ RK L ILP N+ IL A E+M P P Y+Q
Sbjct: 269 KAGKNAYG--ASRFVWLTRKNNLRILPWNTEEILDTAIERMTLLDEPLPKEKLTYKQSLK 326
Query: 56 YLYITGCQQPGGVAVLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSK 115
L ++ + V + FM + +I A + D +
Sbjct: 327 LLGLSDYNEFTKVRYIKENAEKTTFMEGKAYKAII--------KALFKQGLEDSFNSSNL 378
Query: 116 IQEILPDMIGRSSKLFHNQETAVQTYTNLE 145
+ L IG+ L N E V+ T E
Sbjct: 379 SYDDL-LEIGKDFSLLKNLEDIVKALTKFE 407
>gnl|CDD|188032 TIGR00195, exoDNase_III, exodeoxyribonuclease III. The model
brings in reverse transcriptases at scores below 50,
model also contains eukaryotic apurinic/apyrimidinic
endonucleases which group in the same family [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 254
Score = 29.3 bits (66), Expect = 3.3
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 17 SRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANY-LYITGCQQPGGVAVLSHE 74
+R + L L EN +L K+ + P Y ++ +G + GVA+ S E
Sbjct: 13 ARPHKGLAWLKENQPDVLCLQETKVQDEQFPLEPFHKEGYHVFFSGQKGYSGVAIFSKE 71
>gnl|CDD|131834 TIGR02787, codY_Gpos, GTP-sensing transcriptional pleiotropic
repressor CodY. This model represents the full length
of CodY, a pleiotropic repressor in Bacillus subtilis
and other Firmicutes (low-GC Gram-positive bacteria)
that responds to intracellular levels of GTP and
branched chain amino acids. The C-terminal
helix-turn-helix DNA-binding region is modeled by
pfam08222 in Pfam [Regulatory functions, DNA
interactions].
Length = 251
Score = 29.3 bits (66), Expect = 3.6
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 203 GLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMD-----VGC 257
L E P+ GGG + +R+D++ +D DLVL + VG
Sbjct: 92 ELTVFPEESRDLFPKG-LTTIVPIYGGGERLGTLILARSDKEFNDDDLVLAEYAATVVGM 150
Query: 258 EL 259
EL
Sbjct: 151 EL 152
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of
the tRNA. Aminoacyl tRNA synthetases catalyze the
transfer of cognate amino acids to the 3'-end of their
tRNAs by specifically recognizing cognate from
non-cognate amino acids. Members include valyl-,
leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
methionyl-tRNA synthethases. This superfamily also
includes a domain from MshC, an enzyme in the mycothiol
biosynthetic pathway.
Length = 117
Score = 28.2 bits (63), Expect = 3.9
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 130 LFHNQETAVQTYTN-LEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQA 188
L + ++ TN LEA D AV+ L + T+EL W + L E A
Sbjct: 44 LLARLQEFIKRTTNALEAL---DPTTAVQELFKFTNELNWYLDELKPALQTEELREAVLA 100
Query: 189 LLQTML 194
+L+ L
Sbjct: 101 VLRAAL 106
>gnl|CDD|224163 COG1242, COG1242, Predicted Fe-S oxidoreductase [General function
prediction only].
Length = 312
Score = 28.4 bits (64), Expect = 8.1
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 2 KEGEITPGISAEEYISRRKRLLEILPENSVA--ILAAAPEKMM 42
++G + +S EEY+ LE LP V I AP +
Sbjct: 233 EKGRLKF-LSLEEYVELVCDQLEHLPPEVVIHRITGDAPRDTL 274
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,625,754
Number of extensions: 2209197
Number of successful extensions: 1833
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1786
Number of HSP's successfully gapped: 49
Length of query: 441
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 341
Effective length of database: 6,502,202
Effective search space: 2217250882
Effective search space used: 2217250882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)