RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013513
(441 letters)
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 502 bits (1294), Expect = e-177
Identities = 147/434 (33%), Positives = 233/434 (53%), Gaps = 20/434 (4%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
IS +E+ RR+ L+E + S A++ AAPE + YPYRQ++++ Y TG +P V
Sbjct: 3 ISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVL 62
Query: 70 VLSHECG----LCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIG 125
VL +F IW G+ G DAAPE D+A S+I + L ++
Sbjct: 63 VLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLN 122
Query: 126 RSSKLFH----NQETAVQTYTNLEAFQKADFYGA-----VRNLSRLTHELRWVKSPAELK 176
++H V + LE +K + + + HE+R KSP E+
Sbjct: 123 GLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVVHEMRLFKSPEEIA 182
Query: 177 LMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVI 236
++R + I A + M + +E L + +E GA+ ++N +VG G N ++
Sbjct: 183 VLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCIL 242
Query: 237 HYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLE 296
HY+ N+ ++ DGDLVL+D GCE GY D+TRT+P G F+ + +YD++L++ + L
Sbjct: 243 HYTENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLR 302
Query: 297 LCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDP-----YNELNPTSIGHYLGMDVHD 351
L PGTS+L++ V ++ GL ++GI+ D + + + H+LG+DVHD
Sbjct: 303 LYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHD 362
Query: 352 SSVVTYE--RPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGS 409
V + R LEPG+V+T+ PG+YI PE++RGIGIRIED+++ITETG E LT S
Sbjct: 363 VGVYGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIEDDIVITETGNENLTAS 422
Query: 410 LPKEIKHIESLLNN 423
+ K+ + IE+L+
Sbjct: 423 VVKKPEEIEALMVA 436
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 485 bits (1251), Expect = e-171
Identities = 115/438 (26%), Positives = 223/438 (50%), Gaps = 24/438 (5%)
Query: 10 ISAEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVA 69
+ ++ + R+RL+ LP+ S+ IL A M+ Y + + N+ Y+TG +P +
Sbjct: 1 MKSKFFAQNRERLVNTLPDESITILFAGQAPHMSADAHYKFVPNRNFYYVTGIDEPNVIF 60
Query: 70 VL---SHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGR 126
+L + +F+ ++ W G+ + A + K + ++ + ++
Sbjct: 61 MLKKFGNSVEETLFIEKSDPVMEKWVGKTVSNEEAEKISGIKKVIYLDSFEKTMSNIFFT 120
Query: 127 SSKLFHN--------QETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLM 178
+ + T +T + ++ + + N+ ELR K+ E++++
Sbjct: 121 ENVKHLYLDLECREWKGTETKTLAFAKHVREQYPHVTIGNVYPNICELRVFKTDEEIEII 180
Query: 179 RESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHY 238
+E+ ++ + + H+K+ E L A+F++ K G + AFN ++ G NA V+HY
Sbjct: 181 KEAIAVTKDGIYNVLKHAKADMMEYELEAQFDFTLKSSGIKHHAFNTILASGKNATVLHY 240
Query: 239 SRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELC 298
ND +I +GDLVL+D+G + Y +D++ T+P G+FSS ++ +Y+++L KE E+
Sbjct: 241 EDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQIYNIVLNALKETTEII 300
Query: 299 MPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTY- 357
PG ++ ++ +L +G K +G++ D ++ + H+LG+D HD V TY
Sbjct: 301 KPGLKFAALNEHAKKVLAEGCKAVGLIQEDEE--LSKYYYHGVSHFLGLDTHD--VGTYK 356
Query: 358 ERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEIKHI 417
+R LE G+VITIEPG+YI IGIRIED++L+T+ G+E L+ + +E++ I
Sbjct: 357 DRVLEEGMVITIEPGLYIE--------EESIGIRIEDDILVTKDGHENLSKDIIREVEEI 408
Query: 418 ESLLNNFSSETGRENHIN 435
E + + ++ +
Sbjct: 409 EEFMRENNVNVKQDEVVT 426
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 412 bits (1060), Expect = e-141
Identities = 117/468 (25%), Positives = 207/468 (44%), Gaps = 52/468 (11%)
Query: 4 GEITPGISAEEYISRRKRLLEILPEN------SVAILAAAPEKMMTDV-VPYPYRQDANY 56
G T + + R+RL E L +N S+ +L E +RQ++ +
Sbjct: 13 GNETLKVPLALFALNRQRLCERLRKNPAVQAGSIVVLQGGEETQRYCTDTGVLFRQESFF 72
Query: 57 LYITGCQQPGGVAVLSHECG-LCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSK 115
+ G +PG V+ + G +F+P A W G+I + E + D + +
Sbjct: 73 HWAFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDVQYVDE 132
Query: 116 IQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKAD-FYGAVRNLSRLTHELRWVKSPAE 174
I +L T + +F F L E R K+ E
Sbjct: 133 IASVLTSQKPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEIVECRVFKTDME 192
Query: 175 LKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMR-GAQRMAFNPVVGGGPNA 233
L+++R + I +A + M K E L + FE+ C R G + ++ + G G N+
Sbjct: 193 LEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGSGENS 252
Query: 234 AVIHYSR----NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQ 289
AV+HY ND+ I +GD+ L D+G E + + SD+T ++P G F++ ++A+Y+ +L+
Sbjct: 253 AVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYEAVLR 312
Query: 290 TNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDP-----YNELNPTSIGHY 344
+++ + PG +H + + + L +GI++ P +GH+
Sbjct: 313 SSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHGLGHF 372
Query: 345 LGMDVHD---------------SSVVTYERPLEPGVVITIEPGIYIP------------- 376
LG+DVHD + R L+PG+V+T+EPGIY
Sbjct: 373 LGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQPGMVLTVEPGIYFIDHLLDEALADPAR 432
Query: 377 ---LSFSGPERFRGI-GIRIEDEVLITETGYEVLTGSLPKEIKHIESL 420
+ +RFRG G+RIE++V++T++G E+LT +P+ ++ IE+
Sbjct: 433 ASFFNREVLQRFRGFGGVRIEEDVVVTDSGIELLTC-VPRTVEEIEAC 479
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 329 bits (845), Expect = e-109
Identities = 84/451 (18%), Positives = 161/451 (35%), Gaps = 58/451 (12%)
Query: 12 AEEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYL-YITGCQQPGGVAV 70
EE +R + L+ + + I + +++ D YP++ + + ++ P V
Sbjct: 12 IEELQARTREALQREGLDGLVIHSGQGKRLFLDDNHYPFKVNPQFKAWVPVIDNPNCWLV 71
Query: 71 LSHECG-LCMFMPETSAHDVIWKGQIAGV-DAAPETFKADKAYPMSKIQEILPDMIGRSS 128
++ +F + W D ++F +++ LP R +
Sbjct: 72 VNGVDKPTLIFYRP----EDFWHKVPPEPNDFWTDSFDIKLLQQADAVEKFLPYDKSRFA 127
Query: 129 KLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQA 188
+ E A F + + H R K+ EL MRE+ +
Sbjct: 128 YVGEYIEVA-----KALGFDNVNP----DRVLHYLHYQRAYKTDYELDCMREANKLAVAG 178
Query: 189 LLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQK-IDD 247
+ E + + +G + + +V +A+++HY + D +
Sbjct: 179 HKAAEQAFREGKSEFDINLAYAAAS-RQGDNDVPYTSIVALNEHASILHYMQCDTVAPKE 237
Query: 248 GDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEE-ALYDLILQTNKECLELCMPGTSLLQ 306
L+D G HGY +D+TRT+ G +S L + + ++ PG +
Sbjct: 238 SRSFLIDAGANYHGYAADITRTYAQEGVHNSAMFRDLIQAVDKVTLTLVDSLKPGVAYTD 297
Query: 307 IHHYSVGMLRKGLKEIGIVNSDGTD-----PYNELNPTSIGHYLGMDVHD---------- 351
IH + + + L + G+VN + P IGH+LG+ VHD
Sbjct: 298 IHLLAHDGIAQILHDTGMVNLTPPEIVEMGITRTFFPHGIGHFLGLQVHDVGGLVNDDRG 357
Query: 352 --------SSVVTYERPLEPGVVITIEPGIYIP---------------LSFSGPERFRGI 388
+ R +E V TIEPG+Y +++ + ++
Sbjct: 358 TPKPAPDDHPFLRCTRMVEARQVFTIEPGLYFIDSLLRDLKATPASKYINWDTIDAYKPF 417
Query: 389 -GIRIEDEVLITETGYEVLTGSLPKEIKHIE 418
GIRIED +++ E +T L ++H
Sbjct: 418 GGIRIEDNIIVHRDKNENMTRDLDLNLEHHH 448
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 320 bits (823), Expect = e-105
Identities = 82/449 (18%), Positives = 147/449 (32%), Gaps = 59/449 (13%)
Query: 13 EEYISRRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYL-YITGCQQPGGVAVL 71
R + ++E + V + ++ D + YP++ + + ++ P V
Sbjct: 13 ATLQKRTREIIERENLDGVVFHSGQAKRQFLDDMYYPFKVNPQFKAWLPVIDNPHCWIVA 72
Query: 72 SHECGLC-MFMPETSAHDVIWKGQIAGVD-AAPETFKADKAYPMSKIQEILPDMIGRSSK 129
+ +F D W + + F + +++++LP R +
Sbjct: 73 NGTDKPKLIFYRP---VD-FWHKVPDEPNEYWADYFDIELLVKPDQVEKLLPYDKARFAY 128
Query: 130 LFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQAL 189
+ E A L + + H R K+ EL MRE+ I Q
Sbjct: 129 IGEYLEVAQALGFELMNPEP---------VMNFYHYHRAYKTQYELACMREANKIAVQGH 179
Query: 190 LQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRND-QKIDDG 248
E + + + + +V N A++HY+ D
Sbjct: 180 KAARDAFFQGKSEFEIQQAYLLATQ-HSENDNPYGNIVALNENCAILHYTHFDRVAPATH 238
Query: 249 DLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIH 308
L+D G +GY +D+TRT+ G L + Q + PG ++H
Sbjct: 239 RSFLIDAGANFNGYAADITRTYDFTGEGEF--AELVATMKQHQIALMNQLAPGKLYGELH 296
Query: 309 HYSVGMLRKGLKEIGIVNSDGTD-----PYNELNPTSIGHYLGMDVHD------------ 351
+ + L + IV+ + + P +GH++G+ VHD
Sbjct: 297 LDCHQRVAQTLSDFNIVDLSADEIVAKGITSTFFPHGLGHHIGLQVHDVGGFMADEQGAH 356
Query: 352 ------SSVVTYERPLEPGVVITIEPGIYIPLSFSGP----------------ERFRGIG 389
+ R +E V TIEPG+Y S G E G
Sbjct: 357 QEPPEGHPFLRCTRKIEANQVFTIEPGLYFIDSLLGDLAATDNNQHINWDKVAELKPFGG 416
Query: 390 IRIEDEVLITETGYEVLTGSLPKEIKHIE 418
IRIED +++ E E +T L +
Sbjct: 417 IRIEDNIIVHEDSLENMTRELRLRLTTHS 445
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 209 bits (532), Expect = 9e-63
Identities = 62/475 (13%), Positives = 145/475 (30%), Gaps = 74/475 (15%)
Query: 10 ISAEEYISRRKRLLEILPE-----NSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQ 64
I + + R + L E NS+ + + PY + + ++ +
Sbjct: 8 IDFDVFKKRIELLYSKYNEFEGSPNSLLFVLGSSN----AENPYQ-KTTILHNWLLSYEF 62
Query: 65 PGGVAVLSHECGLCMFMPETSAH----DVIWKGQIAGVDAAPETFKADKAYPMSKIQEIL 120
P + L + + + H ++K + + + K+ + +
Sbjct: 63 PATLIALVPGKVIIITSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKKLFDDV 122
Query: 121 PDM-------IGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPA 173
+ +G K + + + EA K + + + ++S ++ VK
Sbjct: 123 IALINSAGKTVGIPEKDSYQGKFMTEWNPVWEAAVKENEFNVI-DISLGLSKVWEVKDVN 181
Query: 174 ELKLMRESASIGCQAL------LQTMLHSKSHPYEGLLAAKFEYECK------------- 214
E + S+ + + + + + L+ K E +
Sbjct: 182 EQAFLSVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLKQLSPDLS 241
Query: 215 ---------MRGAQRMAFNPVVGGGPNAAV-IHYSRNDQKIDDGDLVLMDVGCELHGYVS 264
++P++ G + + + ++ +L G + Y S
Sbjct: 242 ALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCILASCGIRYNNYCS 301
Query: 265 DMTRTWPPCGSFSSLEEALYDLILQTNKECLELCM-PGTSLLQIHHYSVGMLRKGLKEIG 323
++TRT+ S YD +L KE + + PG + +++ + + K E
Sbjct: 302 NITRTFL--IDPSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYIEKTKPE-- 357
Query: 324 IVNSDGTDPYNELNPTSIGHYLGMDVHDSSVV----TYERPLEPGVVITIEPGIYIPLSF 379
+IG +G++ DS+ + R ++ G I G
Sbjct: 358 ---------LVPNFTKNIGSLIGLEFRDSNFILNVKNDYRKIQRGDCFNISFGFNNLKDS 408
Query: 380 SGPERFRGIGIRIEDEVLITETGYE--VLTGSLPKEIKHIESLLNNFSSETGREN 432
+ +++ D V I E + K I NN + ++
Sbjct: 409 QSANNY---ALQLADTVQIPLDETEPPRFLTNYTKAKSQISFYFNNEEEDNNKKK 460
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 203 bits (519), Expect = 7e-62
Identities = 89/407 (21%), Positives = 167/407 (41%), Gaps = 61/407 (14%)
Query: 14 EYISRRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLS 72
+ + +RL E + IL + Y+ GV ++S
Sbjct: 2 NAMEKIERLRSAFDEAGIDGILLTNEH---------------SRRYMANFTGTAGVVLIS 46
Query: 73 HECGLCMFMP---ETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSK 129
+ A +I + ++ + + ++ G
Sbjct: 47 KK-RAQFITDFRYVEQASKQAVGYEIVQ----------HAGLIIDEVAKQVKEL-GIQKL 94
Query: 130 LFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQAL 189
F +Y+ + A+F S L +LR +K+ +E+K+++E+A I A
Sbjct: 95 GFEQDTLTYSSYSAHKEAIDAEF----IPTSGLVEKLRLIKTDSEIKILKEAAQIADAAF 150
Query: 190 LQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGD 249
+ + E ++ + E+ + +GA +F+ +V G +A+ H +++ I+ GD
Sbjct: 151 EHILSFIRPGVSEIEVSNELEFFMRKQGATSSSFDIIVASGLRSALPHGVASEKVIETGD 210
Query: 250 LVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHH 309
V +D G GY SD+TRT G S + +Y+++L+ + G + +
Sbjct: 211 FVTLDFGAYYKGYCSDITRTI-AVGEPSDKLKEIYNIVLEAQLRGVNGIKAGLTGREADA 269
Query: 310 YSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVV--TYERPLEPGVVI 367
+ R + E G Y E S GH +G+++H++ + + LEPG+ +
Sbjct: 270 LT----RDYITEKG---------YGEYFGHSTGHGIGLEIHEAPGLAFRSDTVLEPGMAV 316
Query: 368 TIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEI 414
T+EPGIYI P G+RIED++++T G EV+T PKE+
Sbjct: 317 TVEPGIYI------PGIG---GVRIEDDIIVTSEGNEVIT-KSPKEL 353
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 203 bits (517), Expect = 8e-61
Identities = 64/450 (14%), Positives = 148/450 (32%), Gaps = 50/450 (11%)
Query: 10 ISAEEYISRRKRLLEIL--PENSVAILAAAPEKMMT---DVVPYPYRQD-ANYLYITGCQ 63
I + R LL E+ + ++T PY++ A + ++ G +
Sbjct: 8 IDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLLGYE 67
Query: 64 QPGGVAVLSHECGLCMFMPETSAH-DVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPD 122
P + +L + + + + + A D D ++I+
Sbjct: 68 FPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEY 127
Query: 123 MIGRSSKL--FHNQETAVQTYTNLEAFQKADFYGA-VRNLSRLTHELRWVKSPAELKLMR 179
+ + K+ F +T + ++ + + + S + +K EL ++
Sbjct: 128 IRATNKKVGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 187
Query: 180 ESASIGCQAL-------LQTMLHSKSHPYEGLLAAKFEYECKM---------------RG 217
++ + + L T + + + E
Sbjct: 188 GASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLD 247
Query: 218 AQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFS 277
+ P++ G + + + D + GD+VL +G Y S++ RT+
Sbjct: 248 QLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTY--LFDPD 305
Query: 278 SLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELN 337
S ++ Y ++ K+ E C G + I+ +G++R +
Sbjct: 306 SEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPD-----------LEPNF 354
Query: 338 PTSIGHYLGMDVHDSSVV---TYERPLEPGVVITIEPGIY-IPLSFSGPERFRGIGIRIE 393
++G +G++ +SS++ R L+ G+ + + G + + + + +
Sbjct: 355 VRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEYALLLI 414
Query: 394 DEVLITETGYEVLTGSLPKEIKHIESLLNN 423
D + IT + V T S PK I
Sbjct: 415 DTIQITRSDPIVFTDS-PKAQGDISYFFGE 443
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 200 bits (510), Expect = 2e-60
Identities = 88/408 (21%), Positives = 181/408 (44%), Gaps = 63/408 (15%)
Query: 17 SRRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGVAVLSHEC 75
R +RL++++ E + A L ++ A+ +Y +G + ++S
Sbjct: 2 DRSERLIQLISEEGIDAFL----------IMNIENSARASSVYFSGFTGSFSIILISEN- 50
Query: 76 GLCMFMP--ETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHN 133
+ T A + E + + +++ + D+ +
Sbjct: 51 TRLLITDSRYTVQ---------AKQETDFEVREVKGGDFIDVLKKTVNDL-KIKTIALEE 100
Query: 134 QETAVQTYTNL-EAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQT 192
+ ++ + + AF F + ++R VK E++ ++++ I +A L+T
Sbjct: 101 ERVSLSLFRRISSAFGDRKF----IGIDDEVKQMRMVKDEGEIEKIKQAIEISERAFLET 156
Query: 193 MLHSKSHPYEGL----LAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDG 248
+ + G+ +AA EY + GA+ +AF+ +V G +A+ H +D+ ++ G
Sbjct: 157 VQQIR----AGMTEKEIAALLEYTMRKEGAEGVAFDTIVASGCRSALPHGKASDKVVERG 212
Query: 249 DLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIH 308
D++++D G Y +D+TR G S + ++ ++L+ + L++ G + +
Sbjct: 213 DVIVIDFGATYENYCADITRVV-SIGEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLLD 271
Query: 309 HYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVV--TYERPLEPGVV 366
+ R+ ++E G Y E S+GH +G++VH+ + + PL VV
Sbjct: 272 SVA----REFIREKG---------YGEFFGHSLGHGIGLEVHEGPAISFRNDSPLPENVV 318
Query: 367 ITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEI 414
T+EPGIY+ +F GIRIE++V++ E G E+LT +LP+ I
Sbjct: 319 FTVEPGIYL------EGKF---GIRIEEDVVLKEQGCEILT-TLPRSI 356
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 195 bits (499), Expect = 5e-59
Identities = 85/277 (30%), Positives = 146/277 (52%), Gaps = 26/277 (9%)
Query: 140 TYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSH 199
Y +E +K + + + ++R +KS E+K++ ++ I +A++ +
Sbjct: 98 PYGFIEELKKKANIKEFKKVDDVIRDMRIIKSEKEIKIIEKACEIADKAVMAAIEEITEG 157
Query: 200 PYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCEL 259
E +AAK EY KM GA++ AF+ ++ G +A+ H +D++I+ GDLV++D+G
Sbjct: 158 KKEREVAAKVEYLMKMNGAEKPAFDTIIASGYRSALPHGVASDKRIERGDLVVIDLGALY 217
Query: 260 HGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGL 319
Y SD+TRT GS + ++ +Y+++L+ K+ +E PG + ++ + R +
Sbjct: 218 QHYNSDITRTI-VVGSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELDSIA----RNII 272
Query: 320 KEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVV--TYERPLEPGVVITIEPGIYIPL 377
E G Y E S+GH +G++VH+ V E L G+VITIEPGIYI
Sbjct: 273 AEYG---------YGEYFNHSLGHGVGLEVHEWPRVSQYDETVLREGMVITIEPGIYI-- 321
Query: 378 SFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEI 414
P+ G+RIED +LIT+ G + LT +E+
Sbjct: 322 ----PKIG---GVRIEDTILITKNGSKRLT-KTEREL 350
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 195 bits (499), Expect = 1e-58
Identities = 83/424 (19%), Positives = 142/424 (33%), Gaps = 65/424 (15%)
Query: 7 TPGISAEEYISRRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITGCQQP 65
+ Y R + + ++ + Y+ G
Sbjct: 7 SGRFDTAVYARRLAAAAAATEQAGLAGLVITPG---------------YDLRYLIG---- 47
Query: 66 GGVAVLSHECGLCMFMPETSAHDVI--------WKGQIAGVDAAPETFKADKAYPMSKIQ 117
+ E + +P + ++ K A D P +
Sbjct: 48 --SRADTFERLTALVLPASGVPTIVLPRLELASLKESAASDLGVCVRDWVDGDDPYQLVA 105
Query: 118 EILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVRNLSRLTHELRWVKSPAELKL 177
L + L + + +LR VK AE+
Sbjct: 106 VALGG---APAATAVTDSMPALHLLPLADALGVLPV----LATDVLRQLRMVKEAAEVDA 158
Query: 178 MRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIH 237
+ ++ + + + E +AA G +AF +VG GP+ A H
Sbjct: 159 LAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAEGHSAVAF-VIVGSGPHGADPH 217
Query: 238 YSRNDQKIDDGDLVLMDVGCELH-GYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLE 296
+ +D+K+ GD+V++D+G GY SD TRT+ G S Y + + + ++
Sbjct: 218 HGYSDRKLQVGDIVVVDIGGTYEPGYYSDSTRTY-SIGDPSPDVAQQYSALQRAQRAAVD 276
Query: 297 LCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHD--SSV 354
PG + Q+ + R L + G E GH +G+ VH+ V
Sbjct: 277 AVRPGVTAAQVDAAA----RDVLADAG---------LAEYFVHRTGHGIGLCVHEEPYIV 323
Query: 355 VTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEI 414
E PL G+ +IEPGIY P R+ G RIED V++TE G + + P E+
Sbjct: 324 AGNELPLVAGMAFSIEPGIYF------PGRW---GARIEDIVVVTENGALSVN-NRPHEL 373
Query: 415 KHIE 418
+
Sbjct: 374 MVVP 377
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 193 bits (492), Expect = 7e-58
Identities = 84/319 (26%), Positives = 137/319 (42%), Gaps = 31/319 (9%)
Query: 98 VDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAFQKADFYGAVR 157
V+ P TF D P +K++EIL ++ ++ + K F +
Sbjct: 64 VNNFPATFWHDGENPYAKLREILEELGISKGRILIEDTMRADWLIGIMKLGKFTF----Q 119
Query: 158 NLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRG 217
LS L ELR +K E+K+M ++ I + + + E LA K E +
Sbjct: 120 PLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIR-EL 178
Query: 218 AQRMAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFS 277
+ +AF P+V G NAA H+ ++KI GD++++D G GY SD+TRT G
Sbjct: 179 SDGIAFEPIVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTI-GLGELD 237
Query: 278 SLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELN 337
+Y+++ + + G + + R+ + + G Y E
Sbjct: 238 ERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRA----REVISKAG---------YGEYF 284
Query: 338 PTSIGHYLGMDVHD--SSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDE 395
GH LG+DVH+ E L+ G+ TIEPGIY+ P G+RIED+
Sbjct: 285 IHRTGHGLGLDVHEEPYIGPDGEVILKNGMTFTIEPGIYV------PGLG---GVRIEDD 335
Query: 396 VLITETGYEVLTGSLPKEI 414
+++ E LT +E+
Sbjct: 336 IVVDEGKGRRLT-KAEREL 353
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 182 bits (463), Expect = 4e-53
Identities = 72/428 (16%), Positives = 132/428 (30%), Gaps = 69/428 (16%)
Query: 11 SAEEYISRRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITG-CQQPGGV 68
SA+EY +R+ RL L ++ A + + N Y + G
Sbjct: 19 SAQEYANRQARLRAHLAAENIDAAIFTSYH---------------NINYYSDFLYCSFGR 63
Query: 69 A---VLSHE--CGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDM 123
V++ + + + + + IQ+ LP
Sbjct: 64 PYALVVTEDDVISISANIDGGQPWRRTVGTDNIVYT------DWQRDNYFAAIQQALPKA 117
Query: 124 IGRSSKLFHNQETAVQTYTNL-EAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRESA 182
+ +Q L + A+ +++ +R +KS E ++R A
Sbjct: 118 RRI---GIEHDHLNLQNRDKLAARYPDAEL----VDVAAACMRMRMIKSAEEHVMIRHGA 170
Query: 183 SIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQR------MAFNPVVGGGPNAAVI 236
I + E +A A M G N
Sbjct: 171 RIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMDTWTWFQSGINTDGA 230
Query: 237 HYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLE 296
H +K++ GD++ ++ + GY + + RT S L+ + ++ ++ L+
Sbjct: 231 HNPVTTRKVNKGDILSLNCFPMIAGYYTALERTL-FLDHCSDDHLRLWQVNVEVHEAGLK 289
Query: 297 LCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVH------ 350
L PG I L + + + GH G H
Sbjct: 290 LIKPGARCSDIAR----ELNEIFLKHD---------VLQYRTFGYGHSFGTLSHYYGREA 336
Query: 351 -DSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGS 409
+ LEPG+V+++EP I +P G G G R D +++ E G E +T
Sbjct: 337 GLELREDIDTVLEPGMVVSMEPMIMLPEGLPG----AG-GYREHDILIVNENGAENITKF 391
Query: 410 LPKEIKHI 417
P +
Sbjct: 392 -PYGPEKN 398
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 178 bits (454), Expect = 6e-52
Identities = 66/429 (15%), Positives = 130/429 (30%), Gaps = 72/429 (16%)
Query: 11 SAEEYISRRKRLLEILPENSV-AILAAAPEKMMTDVVPYPYRQDANYLYITG-----CQQ 64
S E R RL + ++ + A+L + N Y +G +
Sbjct: 20 SZAEMTRRZBRLRAWMAKSBIDAVLFTSYH---------------NINYYSGWLYCYFGR 64
Query: 65 PGGVAVLSHECGLCM-FMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDM 123
+ + + + I D + + +
Sbjct: 65 KYAZVIBZVKAVTISKGIDGGMPWRRSFGBNIVYTD-----------WKRDNFYSAVKKL 113
Query: 124 IGRSSKL-FHNQETAVQTYTNL-EAFQKADFYGAVRNLSRLTHELRWVKSPAELKLMRES 181
+ + ++ + + L +A +F ++ R +KS E L+RZ
Sbjct: 114 VKGAKZIGIEHDHVTLBHRRZLZKALPGTEF----VDVGZPVMWZRVIKSSEEZBLIRZG 169
Query: 182 ASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAFNPVVG------GGPNAAV 235
A I T + E +A A+ + ++ G N
Sbjct: 170 ARISDIGGAATAAAISAGVPEYEVAIATTBAMVRZIARBFPYVELMDTWIWFQSGINTDG 229
Query: 236 IHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECL 295
H B+ ++ GD++ ++ + GY + + RT +++ ++ L
Sbjct: 230 AHNPVTBRVVZRGDILSLNCFPMIFGYYTALERTL-FLZZVBDASLZIWZKNTAVHRRGL 288
Query: 296 ELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVV 355
ZL PG I L +Z GH G+ H
Sbjct: 289 ZLIKPGARCKDIAS----ELNBMYRZWD---------LLRYRTFGYGHSFGVLBHYYGRE 335
Query: 356 TY-------ERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTG 408
Z LEPG+V+++EP + P G G G R D ++I E E +TG
Sbjct: 336 AGVELREDIZTVLEPGMVVSMEPMVMBPEGEPG----AG-GYREHDILVIKENBTENITG 390
Query: 409 SLPKEIKHI 417
P +H
Sbjct: 391 F-PFGPEHN 398
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 147 bits (373), Expect = 9e-40
Identities = 71/423 (16%), Positives = 141/423 (33%), Gaps = 68/423 (16%)
Query: 18 RRKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYLYITGCQQPGGV--------A 69
R +RL + + A L +M D N Y T
Sbjct: 82 RHRRLTDHVVARGYAGL------LMFD--------PLNIRYATDSTNMQLWNTHNPFRAT 127
Query: 70 VLSHECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKADKAYPMSKIQEILPDMI-GRSS 128
+L + + M+ + S + + A + F D+ + ++ + +
Sbjct: 128 LLCADGYMVMWDYKNSPFLSEFNPLVREQRAGADLFYFDRGDKVDVAADVFANEVRILLR 187
Query: 129 KLFHNQETAVQTYTNLEAFQKADFYGA-VRNLSRLTHELRWVKSPAELKLMRESASIGCQ 187
L + G + + +T + R VK P E++ MR ++
Sbjct: 188 DHAPGLRRLAVDKVMLHGLRALQAQGFEIMDGEEVTEKARSVKGPDEIRAMRCASHACEV 247
Query: 188 ALLQTMLHSKSHPYEGL-----LAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIHYSRND 242
A+ + ++S +G+ + A E RG + ++ GP +
Sbjct: 248 AVRKMEDFARSKVGDGVTCENDIWAILHSENVRRGGE-WIETRLLASGPRSNPWFQECGP 306
Query: 243 QKIDDGDLVLMDVGCEL-HGYVSDMTRTWPPCGSFSSLEEALYDLIL--QTNKECLELCM 299
+ +++ D +G +D++R+W G + +Y + + + +E+
Sbjct: 307 RVCQRNEIISFDTDLVGAYGICTDISRSWW-IGDQKPRADMIYAMQHGVEHIRTNMEMLK 365
Query: 300 PGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVH--------- 350
PG + E+ + + + H +G+
Sbjct: 366 PGVMI---------------PELSANTHVLDAKFQKQKYGCLMHGVGL-CDEWPLVAYPD 409
Query: 351 DSSVVTYERPLEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSL 410
+ Y+ PLEPG+ + +E I G I++ED+VLITE GYE LT
Sbjct: 410 HAVAGAYDYPLEPGMTLCVEALISEE----G----GDFSIKLEDQVLITEDGYENLT-KY 460
Query: 411 PKE 413
P +
Sbjct: 461 PFD 463
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 77.7 bits (192), Expect = 2e-15
Identities = 61/269 (22%), Positives = 109/269 (40%), Gaps = 60/269 (22%)
Query: 169 VKSPAELKLMRES-----ASIGCQAL--LQTMLHSKSHPYEGLLAAKFEYECKMRGAQRM 221
VK+ AE + MR + ++ C+ L+ + K E A K E + R Q
Sbjct: 321 VKNSAESEGMRRAHIKDAVAL-CELFNWLEKEVP-KGGVTEISAADKAE---EFRRQQAD 375
Query: 222 ----AFNPVVGGGPNAAVIHYS---RNDQKIDDGDLVLMDVGCELHGYV---SDMTRTWP 271
+F + GP A+IHY+ ++ + ++ L+D G Y +D+TRT
Sbjct: 376 FVDLSFPTISSTGPTGAIIHYAPVPETNRTLSLDEVYLIDSGA---QYKDGTTDVTRTM- 431
Query: 272 PCGSFSSLEEALYDLILQTNKECLELCM----PGTSLLQIHHYSVGMLRKGLKEIGIVNS 327
+ ++ E+ + +L+ + + + GT + ++ R L + G+
Sbjct: 432 HFETPTAYEKECFTYVLKGH---IAVSAAVFPTGTKGHLLDSFA----RSALWDSGLDYL 484
Query: 328 DGTDPYNELNPTSIGHYLGMDVHD-----SSVVTYERPLEPGVVITIEPGIYIPLSFSGP 382
GT +G +L VH+ S + PLE G+++T EPG Y +F
Sbjct: 485 HGTG-------HGVGSFLN--VHEGPCGISYKTFSDEPLEAGMIVTDEPGYYEDGAF--- 532
Query: 383 ERFRGIGIRIEDEVLITETGYEVLTGSLP 411
GIRIE+ VL+ + +
Sbjct: 533 ------GIRIENVVLVVPVKTKYNFNNRG 555
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 58.7 bits (143), Expect = 5e-10
Identities = 60/292 (20%), Positives = 102/292 (34%), Gaps = 81/292 (27%)
Query: 169 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL-------LAAKFEYECKMRGAQR- 220
+KSP E+++M ES + L + P G+ F AQ
Sbjct: 4 LKSPREIEMMDESGELLADVH--RHLRTFIKP--GITSWDIEVFVRDFIESHGGVAAQIG 59
Query: 221 -MAFNPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSL 279
+ N + H + + DGDL+ +D+ +L G +SD ++ G +
Sbjct: 60 YEGYKYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSY-VVGESTPE 118
Query: 280 EEALYDLILQTNKECL----ELCMPGTSLLQI----------HHYSVGMLRKGLKEIGIV 325
+ L ++ K+ L E G + I Y V +R
Sbjct: 119 IDRL----MEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGV--VR--------- 163
Query: 326 NSDGTDPYNELNPTSIGHYLGMDVHDS-SVVTYERP-----LEPGVVITIEPGIYIPLSF 379
+ +GH +G +H+S + Y L+ G+VITIEP +
Sbjct: 164 ---------DF----VGHGIGPTIHESPMIPHYGEAGKGLRLKEGMVITIEPMVNT---- 206
Query: 380 SGPERFR----GIGIRIEDE---------VLITETGYEVLTGSLPKEIKHIE 418
G R + G ED + IT+ G +LT +E+ ++E
Sbjct: 207 -GTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKEGPRILTSQ-GEELTYLE 256
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 58.3 bits (142), Expect = 8e-10
Identities = 54/282 (19%), Positives = 99/282 (35%), Gaps = 81/282 (28%)
Query: 169 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL-------LAAKFEYECKMRGAQR- 220
+K+P+E++ M+++ AL + P G L + + +++ A +
Sbjct: 16 IKTPSEIEKMKKAGKAVAVAL--REVRKVIVP--GKTAWDVETLVLEIFKKLRVKPAFKG 71
Query: 221 -MAFNPVVGGGPNAAVIH-YSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSS 278
+ N V+H ++ +GD+V +DVG G D T+ G
Sbjct: 72 YGGYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTY-IVGETDE 130
Query: 279 LEEALYDLILQTNKECL----ELCMPGTSLLQI----------HHYSVGMLRKGLKEIGI 324
+ L ++ +E L ++ PG L + ++V +R
Sbjct: 131 RGKEL----VRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNV--IR-------- 176
Query: 325 VNSDGTDPYNELNPTSIGHYLGMDVHDS-SVVTYERP-----LEPGVVITIEPGIYIPLS 378
+ +GH +G ++H+ + Y P L G+ + IEP +
Sbjct: 177 ----------DY----VGHGVGRELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSE--- 219
Query: 379 FSGPERFR----GIGIRIEDE---------VLITETGYEVLT 407
G R G D +LITE G E+LT
Sbjct: 220 --GDWRVVVKEDGWTAVTVDGSRCAHFEHTILITENGAEILT 259
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 56.4 bits (137), Expect = 4e-09
Identities = 64/283 (22%), Positives = 100/283 (35%), Gaps = 77/283 (27%)
Query: 169 VKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL-------LAAKFEYECKMRGAQRM 221
++P EL M + SI AL + + G+ +A + GA
Sbjct: 34 QRTPGELDAMAAAGSIVGAAL--VAVRDAAKA--GVSTLELDQVAESV---IREAGA-VP 85
Query: 222 AFNPVVG-GG--------PNAAVIH-YSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWP 271
+F +G G N V+H + DGDLV +D G L G+ D T+
Sbjct: 86 SF---LGYHGFPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTF- 141
Query: 272 PCGSFSSLEEALYDLILQTNKECL----ELCMPGTSLLQIHH----YSVGMLRKGLKEIG 323
G+ +EAL + + + +PG L + H + ++ + G
Sbjct: 142 AVGTVIPSDEAL----SEATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFG 197
Query: 324 IVNSDGTDPYNELNPTSIGHYLGMDVH-DSSVVTYERP-----LEPGVVITIEPGIYIPL 377
IV D Y GH +G +H D + P L G V+ IEP + +
Sbjct: 198 IV-----DGY-------GGHGIGRSMHLDPFLPNEGAPGKGPLLAVGSVLAIEPMLTL-- 243
Query: 378 SFSGPERFR----GIGIRIED-------E--VLITETGYEVLT 407
G + R + D E V +TE G +LT
Sbjct: 244 ---GTTQTRVLADDWTVVTTDGSRAAHWEHTVAVTEAGPRILT 283
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 54.4 bits (131), Expect = 3e-08
Identities = 30/246 (12%), Positives = 75/246 (30%), Gaps = 44/246 (17%)
Query: 157 RNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL----LAAKFEYE 212
+ + + + + + I + L + S G+ L K +
Sbjct: 7 HHSGEDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASS----SGVSVLSLCEKGDAM 62
Query: 213 CKMRGAQRMAFNPVVGGG--------PNAAVIHYS----RNDQKIDDGDLVLMDVGCELH 260
+ + G N V H+S D + +GDLV +D+G +
Sbjct: 63 IMEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVD 122
Query: 261 GYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLE----LCMPGTSLLQI-HHYSVGML 315
G+++++ T+ + + +++ C E L PG Q+ ++
Sbjct: 123 GFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNK--- 179
Query: 316 RKGLKEIGIVNSDGTDPYNELNPTSIGHYL---GMDVHDSSVVTYERP-----LEPGVVI 367
+ +S P + + ++ + + ++ E V
Sbjct: 180 --------VAHSFNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVY 231
Query: 368 TIEPGI 373
++ +
Sbjct: 232 AVDVLV 237
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 5e-08
Identities = 82/504 (16%), Positives = 141/504 (27%), Gaps = 154/504 (30%)
Query: 13 EEYISRRKRLLEILPENSVAI----------LAAA------PEKMMTDVVPYPYRQDANY 56
+ Y+ R+ LLE+ P +V I +A + M + + +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-F-------W 186
Query: 57 LYITGCQQPGGVAVLSHECGLCM-FMPETSA---HDVIWKGQIAGVDAAPETFKADKAYP 112
L + C P VL L P ++ H K +I + A K Y
Sbjct: 187 LNLKNCNSPE--TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 113 MSKIQEILPDMIGRSSKLFHNQETAVQTYTNLEAF-------------QKADFYGAVRNL 159
+ +L + VQ AF Q DF A
Sbjct: 245 NCLL--VLLN---------------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 160 SRLTHELRWVKSPAE-LKLMRESASIGCQALLQTMLHSKSHPYE-GLLAAKFE------- 210
+P E L+ + Q L + +L ++P ++A
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL--TTNPRRLSIIAESIRDGLATWD 345
Query: 211 ----YEC-KMRGAQRMAFNPVVGGGPNAAVIHYS-----RNDQKI----------DDGDL 250
C K+ + N + P + I D
Sbjct: 346 NWKHVNCDKLTTIIESSLNVL---EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 251 VLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIH-- 308
+M V +LH Y S + + P + S + + L+ + +H
Sbjct: 403 DVMVVVNKLHKY-SLVEK-QPKESTIS-----IPSIYLELKVKLEN-------EYALHRS 448
Query: 309 ---HYSVGMLRKGLK--EIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERPLEP 363
HY+ + K ++ D Y ++G H ++ ER
Sbjct: 449 IVDHYN---IPKTFDSDDLIPPYLDQ---Y-------FYSHIGH--HLKNIEHPER---- 489
Query: 364 GVVITIEPGIYIPLSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEIKHI------ 417
+T+ ++ L F RF IR + L +I
Sbjct: 490 ---MTLFRMVF--LDF----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 418 -ESLLN---NFSSETGRENHINAK 437
E L+N +F + EN I +K
Sbjct: 541 YERLVNAILDFLPKIE-ENLICSK 563
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 2e-07
Identities = 75/479 (15%), Positives = 149/479 (31%), Gaps = 162/479 (33%)
Query: 4 GEITPGI--SAEEYI--SR-RKRLLEILPENSVAILAAAPEKMMTDVVPYPYRQDANYL- 57
G + + + S+ +++ +ILPE + A ++V +L
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV-------GKFLG 66
Query: 58 YITGCQQPGGV--------AVLSH-ECGLCMFMPETSAHDVIWKGQIAGVDAAPETFKAD 108
Y++ +P V L+ E ++ H + ++ + +
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENC---YLEGNDIHALA--AKLLQENDTTLVKTKE 121
Query: 109 --KAYPMSKIQEILPDMIGRSSKLFHN-QETAVQTYTNLEAF--QKADFYGAVRNLSRLT 163
K Y ++I P +S LF E Q F Q G +
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA---IFGGQ-----GNTDD----- 168
Query: 164 HELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMRGAQRMAF 223
+ + EL + L QT Y L+ + A+
Sbjct: 169 ----YFE---EL-----------RDLYQT--------YHVLVGDLIK-----FSAET--L 195
Query: 224 NPVVGGGPNAAVIHYSRNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEAL 283
+ ++ +A +++ G + ++ + + T P S+
Sbjct: 196 SELIRTTLDAEK-VFTQ---------------GLNILEWLENPSNT-PDKDYLLSIP--- 235
Query: 284 YDLILQTNKECLELCMPGTSLLQIHHYSV---------GMLRKGLKEI-----GIV---- 325
+ P ++Q+ HY V G LR LK G+V
Sbjct: 236 -------------ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 326 --NSDGTDPYNELNPTSIGH--YLGMDVHDSSVVTYERP-LEPGVV-ITIEPGIYIP--- 376
+D + + +I ++G+ ++ Y L P ++ ++E +P
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYE----AYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 377 LSFSGPERFRGIGIRIEDEVLITETGYEVLTGSLPKEIKHIE-SLLNNFSSETGRENHI 434
LS S + +++D V T + LP K +E SL+N G +N +
Sbjct: 339 LSISNLTQ-----EQVQDYVNKTNS-------HLPAG-KQVEISLVN------GAKNLV 378
Score = 44.7 bits (105), Expect = 6e-05
Identities = 76/400 (19%), Positives = 122/400 (30%), Gaps = 137/400 (34%)
Query: 10 ISAEEYISRRKRLLEIL--PEN--SVAILAAAPEKMMTDVVPYPY---RQDANYLYITGC 62
+ AE+ ++ +LE L P N L + P + P Q A+Y +T
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-------ISCPLIGVIQLAHY-VVT-A 253
Query: 63 QQ----PGGV-----AVLSHECGLCM------------FMPETSAHDVI----WKGQIAG 97
+ PG + H GL F S I + G +
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF--FVSVRKAITVLFFIG-VRC 310
Query: 98 VDAAPETFKADKAYPMSKIQEILPDMIGRSSKLFH----NQETAVQTY---TNLEAFQKA 150
+A P T + P S +++ L + G S + QE VQ Y TN
Sbjct: 311 YEAYPNT-----SLPPSILEDSLENNEGVPSPMLSISNLTQE-QVQDYVNKTNSHLPAGK 364
Query: 151 DFYGAVRN-------------LSRLTHELRWVKSPAELKLMRESASIGCQALLQT-MLHS 196
++ N L L LR K+P+ L Q+ + S
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD--------------QSRIPFS 410
Query: 197 KSHPYEGLLAAKFEYECKMRGAQRMAFNPVVGGGPNAAVIH--YSRNDQKIDDGDLVLMD 254
+ KF F PV A+ H + + DLV +
Sbjct: 411 ERKL-------KFSNR----------FLPV------ASPFHSHLLVPASDLINKDLVKNN 447
Query: 255 V---GCELHGYVSDMTRTWP-PCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHH- 309
V ++ V D T S+ E + D I+ L + T+ + H
Sbjct: 448 VSFNAKDIQIPVYD-TFDGSDLRVLSGSISERIVDCII-----RLPVKWETTTQFKATHI 501
Query: 310 --------YSVGML------RKGLKEI--GIVNSDGTDPY 333
+G+L G++ I G ++ + D Y
Sbjct: 502 LDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 35.4 bits (81), Expect = 0.042
Identities = 44/252 (17%), Positives = 79/252 (31%), Gaps = 91/252 (36%)
Query: 12 AEEYISRRK--RLLEILPEN--SVAILAAAPE---------KMMTDVVP----------- 47
A+ + +L+I+ N ++ I + M+ + +
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 48 --------YPYRQDANYLYITGCQQPG----GVAVLSH--ECGLCMFMPETSA---HDVI 90
Y +R + L T QP A GL +P + H +
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL---IPADATFAGHSL- 1764
Query: 91 WKGQ------IAGV----DAAPETFK----ADKAYPMSKIQEILPDMI----GRSSKLFH 132
G+ +A V F A P ++ MI GR + F
Sbjct: 1765 --GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF- 1821
Query: 133 NQETAVQTYT----------------NLEAFQKADFY---GAVRNLSRLTHELRWVKSPA 173
+QE A+Q N+E Q Y G +R L +T+ L ++K
Sbjct: 1822 SQE-ALQYVVERVGKRTGWLVEIVNYNVENQQ----YVAAGDLRALDTVTNVLNFIKLQK 1876
Query: 174 -ELKLMRESASI 184
++ +++S S+
Sbjct: 1877 IDIIELQKSLSL 1888
Score = 29.2 bits (65), Expect = 3.6
Identities = 28/149 (18%), Positives = 44/149 (29%), Gaps = 49/149 (32%)
Query: 299 MPGTSL--LQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVT 356
M S L + H S+ E + L PT+ ++ + +
Sbjct: 1 MDAYSTRPLTLSHGSL--------EHVL-----------LVPTAS-FFIASQLQEQFNKI 40
Query: 357 YERPLEPGVVITIEPGIYIPLSFSGPE---RFRGIGIRIEDEVLITETG--YEVLTGSLP 411
P E G EP + E +F G + V ++ G +VL
Sbjct: 41 LPEPTE-GFAADDEPT-------TPAELVGKFLGY---VSSLVEPSKVGQFDQVL----- 84
Query: 412 KEIKHIESLLNNFSSETGRENHINAKAAT 440
L F + N I+A AA
Sbjct: 85 ------NLCLTEFENCYLEGNDIHALAAK 107
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 50.6 bits (122), Expect = 3e-07
Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 85/210 (40%)
Query: 241 NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECL----E 296
+ + I +GDLV +DV +GY +D ++ G +
Sbjct: 80 SKRVIREGDLVNIDVSALKNGYYADTGISF-VVGESDD-PMK--QKVCDVATMAFENAIA 135
Query: 297 LCMPGTSLLQI----------HHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLG 346
PGT L I + V +K + GH +G
Sbjct: 136 KVKPGTKLSNIGKAVHNTARQNDLKV------IKNL------------------TGHGVG 171
Query: 347 MDVHD--SSVVTYERP-----LEPGVVITIEP----GIYIPLSFSGPERFRGIGIRI--- 392
+ +H+ + V+ Y P L G+V+ IEP +
Sbjct: 172 LSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNAS--------------FVTEGKN 217
Query: 393 ---------------EDEVLITETGYEVLT 407
E V++T+ G + T
Sbjct: 218 EWAFETSDKSFVAQIEHTVIVTKDGPILTT 247
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 51.1 bits (122), Expect = 4e-07
Identities = 43/221 (19%), Positives = 69/221 (31%), Gaps = 31/221 (14%)
Query: 170 KSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL----LAAKFEYECKMRGAQR----- 220
S RE+A Q M K G+ + K E + +
Sbjct: 161 ASEEIWNDFREAAEAHRQVRKYVMSWIK----PGMTMIEICEKLEDCSRKLIKENGLNAG 216
Query: 221 MAFNPVVGGGPNAAVIHYS---RNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFS 277
+AF P G N HY+ + + D+ +D G + G + D T +
Sbjct: 217 LAF-PT-GCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYD 274
Query: 278 SLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTDPYNELN 337
+L +A+ D ++ L + ++ EI + P LN
Sbjct: 275 TLLKAVKDAT----NTGIKCAGIDVRLCDVGEAIQEVMESYEVEI-DGKTYQVKPIRNLN 329
Query: 338 PTSIGHYLGMDVHDSSVVTYERP-----LEPGVVITIEPGI 373
SIG Y +H V + +E G V IE
Sbjct: 330 GHSIGQYR---IHAGKTVPIVKGGEATRMEEGEVYAIETFG 367
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 49.6 bits (119), Expect = 8e-07
Identities = 44/216 (20%), Positives = 74/216 (34%), Gaps = 47/216 (21%)
Query: 174 ELKLMRESASIGCQALLQTMLHSKSHP----YEGLLAAKFEYECKMRGAQRMAFNPVVGG 229
+ + + ++ I + + P E LA E G + AF PV
Sbjct: 2 DTEKLMKAGEIAKKVR--EKAIKLARPGMLLLE--LAESIEKMIMELGG-KPAF-PV-NL 54
Query: 230 GPNAAVIHYS---RNDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDL 286
N HY+ + + +GD + +DVG + G+++D T G D
Sbjct: 55 SINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTV-RVG-------MEEDE 106
Query: 287 ILQTNKECLELCM----PGTSLLQIHHYSVGMLRKGLKEIG-IVNSDGTDPYNELNPTSI 341
+++ KE L + G + ++ I + G P L+ I
Sbjct: 107 LMEAAKEALNAAISVARAGVEIKELGK-----------AIENEIRKRGFKPIVNLSGHKI 155
Query: 342 GHYLGMDVH-DSSVVTYERP-----LEPGVVITIEP 371
Y +H S+ RP L+ G V IEP
Sbjct: 156 ERY---KLHAGISIPNIYRPHDNYVLKEGDVFAIEP 188
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 48.6 bits (116), Expect = 2e-06
Identities = 33/227 (14%), Positives = 68/227 (29%), Gaps = 31/227 (13%)
Query: 164 HELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGL----LAAKFEYECKMRGAQ 219
E+ L+ R +A +A + + G+ + E +
Sbjct: 36 MEIENFTESDILQDARRAAEAHRRARYRVQSIVR----PGITLLEIVRSIEDSTRTLLKG 91
Query: 220 R----MAFNPVVGGGPNAAVIHYS----RNDQKIDDGDLVLMDVGCELHGYVSDMTRTWP 271
+ F P G N+ HY+ D + + D++ +D G G + D T
Sbjct: 92 ERNNGIGF-PA-GMSMNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTVA 149
Query: 272 PCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGLKEIGIVNSDGTD 331
+ L A + + ++ + I ++ EIG
Sbjct: 150 FKENLEPLLVAAREG----TETGIKSLGVDVRVCDIGRDINEVISSYEVEIGG-RMWPIR 204
Query: 332 PYNELNPTSIGHYLGMDVHDS-SVVTYERP----LEPGVVITIEPGI 373
P ++L+ SI + +H S+ ++ +E
Sbjct: 205 PISDLHGHSISQF---RIHGGISIPAVNNRDTTRIKGDSFYAVETFA 248
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 48.1 bits (115), Expect = 3e-06
Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 74/209 (35%)
Query: 241 NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECL----E 296
+ + + GD++ +D+ G SD+ T+ G + + + +L+ +T L +
Sbjct: 180 DYRPLKSGDIINIDISVFYKGVHSDLNETYF-VGDINDVPKEGKELV-ETCYFSLMEAIK 237
Query: 297 LCMPGTSLLQI----------HHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLG 346
C PG I ++SV V + GH +G
Sbjct: 238 KCKPGMFYKNIGTLIDAYVSKKNFSV------------V------------RSYSGHGVG 273
Query: 347 MDVHDS-SVVTYERP-----LEPGVVITIEPGIYIPLSFSGPERFRGIGIRI-------- 392
H + +V +++ ++PG V TIEP I + +
Sbjct: 274 KLFHSNPTVPHFKKNKAVGIMKPGHVFTIEPMI----NQGHYS------DVLWPDQWTSA 323
Query: 393 ----------EDEVLITETGYEVLTGSLP 411
E +LIT G E+LT
Sbjct: 324 TSDGKLSAQFEHTLLITNNGVEILTKRTQ 352
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 46.9 bits (112), Expect = 6e-06
Identities = 43/215 (20%), Positives = 71/215 (33%), Gaps = 77/215 (35%)
Query: 241 NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECL----E 296
+ + + +GD+V +D+ +GY D+ T+ G L +QT ECL +
Sbjct: 152 DRRPLQEGDIVNVDITLYRNGYHGDLNETFF-VGEVDDGARKL----VQTTYECLMQAID 206
Query: 297 LCMPGTSLLQI----------HHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLG 346
PG ++ + +SV V + GH +
Sbjct: 207 AVKPGVRYRELGNIIQKHAQANGFSV------------V------------RSYCGHGIH 242
Query: 347 MDVHDS-SVVTYERP-----LEPGVVITIEPGIYIPLSFSGPERFRGIGIRI-------- 392
H + +V Y + ++ G V TIEP I G +
Sbjct: 243 KLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMI----CEGGWQ------DETWPDGWTAV 292
Query: 393 ----------EDEVLITETGYEVLTGSLPKEIKHI 417
E +L+T+TG E+LT L H
Sbjct: 293 TRDGKRSAQFEHTLLVTDTGCEILTRRLDSARPHF 327
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 46.0 bits (110), Expect = 8e-06
Identities = 46/213 (21%), Positives = 79/213 (37%), Gaps = 75/213 (35%)
Query: 241 NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECL----E 296
ND+ + +GD+V +DV L G+ D +R + G + + L +Q + + E
Sbjct: 85 NDKPLKNGDIVNIDVTVILDGWYGDTSRMYY-VGDVAIKPKRL----IQVTYDAMMKGIE 139
Query: 297 LCMPGTSLLQI----------HHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLG 346
+ PG L I H+YSV +++ GH +G
Sbjct: 140 VVRPGAKLGDIGYAIQSYAEKHNYSV------VRDYT------------------GHGIG 175
Query: 347 MDVHDS-SVVTYERP-----LEPGVVITIEPGIYIPLSFSGPERFRGIGIRIEDE----- 395
HD S++ Y R L+ G+ T+EP I G + D
Sbjct: 176 RVFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINA-----GN---YDTILSKLDGWTVTT 227
Query: 396 ------------VLITETGYEVLTGSLPKEIKH 416
+ +T+ G+E+ T S PK++ +
Sbjct: 228 RDKSLSAQFEHTIGVTKDGFEIFTLS-PKKLDY 259
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 44.8 bits (107), Expect = 2e-05
Identities = 48/225 (21%), Positives = 78/225 (34%), Gaps = 90/225 (40%)
Query: 241 NDQKI-DDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECL---- 295
+D K+ DGD+V +DV G+ D ++ + G + + E L + +E L
Sbjct: 82 DDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFI-VGKPTIMGERL----CRITQESLYLAL 136
Query: 296 ELCMPGTSLLQI----------HHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYL 345
+ PG +L +I +SV ++E GH +
Sbjct: 137 RMVKPGINLREIGAAIQKFVEAEGFSV------VREYC------------------GHGI 172
Query: 346 GMDVHDS-SVVTYERP-----LEPGVVITIEP----GIYIPLSFSGPERFRGIGIRI--- 392
G H+ V+ Y+ L+PG+ TIEP G IR
Sbjct: 173 GRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKK--------------EIRTMKD 218
Query: 393 ---------------EDEVLITETGYEVLTGS----LPKEIKHIE 418
E +++T+ G E+LT +P I H E
Sbjct: 219 GWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE 263
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 44.4 bits (106), Expect = 4e-05
Identities = 44/205 (21%), Positives = 68/205 (33%), Gaps = 77/205 (37%)
Query: 241 NDQKIDDGDLVLMDVGCELHGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECL----E 296
+ I DGD+V +DV + G D T+P G + L + +E
Sbjct: 118 DSTVITDGDIVNIDVTAYIGGVHGDTNATFP-AGDVADEHRLL----VDRTREATMRAIN 172
Query: 297 LCMPGTSLLQI----------HHYSVGMLRKGLKEIGIVNSDGTDPYNELNPTSIGHYLG 346
PG +L I Y+V V GH +G
Sbjct: 173 TVKPGRALSVIGRVIESYANRFGYNV------------V------------RDFTGHGIG 208
Query: 347 MDVHDS-SVVTYERP-----LEPGVVITIEPGIYIPLSFSGPERFRGIGIRI-------- 392
H+ V+ Y++P ++PG+ TIEP I + + I
Sbjct: 209 TTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMI----NLGALD------YEIWDDGWTVV 258
Query: 393 ----------EDEVLITETGYEVLT 407
E +L+T+TG E+LT
Sbjct: 259 TKDRKWTAQFEHTLLVTDTGVEILT 283
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.0
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 412 KEIKHIESLLNNFSSETGRENHINA 436
+ +K +++ L ++ ++ I A
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKA 44
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA
processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus
fulgidus}
Length = 244
Score = 28.4 bits (63), Expect = 4.5
Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 27/158 (17%)
Query: 260 HGYVSDMTRTWPPCGSFSSLEEALYDLILQTNKECLELCMPGTSLLQIHHYSVGMLRKGL 319
H + SD+T + G + + + LEL ++ H +
Sbjct: 4 HHHRSDITSLYKKVGENLYFQGMGSAFVFL--EASLELIPQK---IRGHPAVRADAIRRG 58
Query: 320 KEIG--IVNSDGTDPYNELNPTSIGHYLGMDVHDSSVVTYERPL---------EPGVVIT 368
K +++ + VH ++ + PL G +I
Sbjct: 59 KRPEKILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDSPLRDFEVYVHTLNGEIIW 118
Query: 369 IEPGIYIPLSFSGPERFRGI--------GIRIEDEVLI 398
+ +P ++ RF G+ I D LI
Sbjct: 119 VNRETRLPRNY---NRFVGLMEKLFEERRITAGDTTLI 153
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 28.7 bits (65), Expect = 4.6
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 375 IPLSFSGPERFRGIGIRIEDE-----VLITETGYEVLTGSLPK 412
+ + + + GI+ D V+I TG++ +TGSL +
Sbjct: 356 VDIREAPIQEVTPEGIKTADAAYDLDVIIYATGFDAVTGSLDR 398
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
DNA-binding, DNA- directed RNA polymerase, isopeptide
bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Length = 345
Score = 28.4 bits (62), Expect = 5.3
Identities = 10/65 (15%), Positives = 20/65 (30%)
Query: 157 RNLSRLTHELRWVKSPAELKLMRESASIGCQALLQTMLHSKSHPYEGLLAAKFEYECKMR 216
+ ++ + AEL + + + L K E ++AA C+
Sbjct: 124 NEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRA 183
Query: 217 GAQRM 221
R
Sbjct: 184 EVART 188
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.400
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,903,323
Number of extensions: 428988
Number of successful extensions: 983
Number of sequences better than 10.0: 1
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 58
Length of query: 441
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 345
Effective length of database: 4,021,377
Effective search space: 1387375065
Effective search space used: 1387375065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)