Query 013514
Match_columns 441
No_of_seqs 107 out of 140
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 12:00:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3o_B Transcription initiatio 99.6 4E-16 1.4E-20 125.2 4.5 44 398-441 2-45 (76)
2 3b0c_W CENP-W, centromere prot 94.0 0.032 1.1E-06 43.5 2.9 43 398-440 1-43 (76)
3 1ku5_A HPHA, archaeal histon; 88.8 0.38 1.3E-05 36.6 3.8 39 401-440 6-44 (70)
4 1id3_B Histone H4; nucleosome 88.6 0.36 1.2E-05 39.9 3.8 44 396-440 23-66 (102)
5 2hue_C Histone H4; mini beta s 87.5 0.48 1.6E-05 37.6 3.7 43 397-440 6-48 (84)
6 1b67_A Protein (histone HMFA); 86.7 0.63 2.1E-05 34.9 3.8 38 402-440 3-40 (68)
7 1tzy_D Histone H4-VI; histone- 84.6 0.76 2.6E-05 37.7 3.6 44 396-440 24-67 (103)
8 2yfw_B Histone H4, H4; cell cy 83.3 0.87 3E-05 37.4 3.5 43 397-440 25-67 (103)
9 1bh9_B TAFII28; histone fold, 79.2 1.8 6.1E-05 35.4 3.9 39 401-440 16-54 (89)
10 1n1j_A NF-YB; histone-like PAI 79.0 2 6.9E-05 34.1 4.1 44 397-440 4-48 (93)
11 3b0c_T CENP-T, centromere prot 75.5 2 6.8E-05 36.0 3.3 41 399-440 5-45 (111)
12 1taf_A TFIID TBP associated fa 65.5 7.1 0.00024 30.5 4.2 35 405-440 5-39 (68)
13 2byk_B Chrac-14; nucleosome sl 62.5 4.1 0.00014 34.8 2.5 44 397-440 5-49 (128)
14 1f1e_A Histone fold protein; a 60.9 9.8 0.00034 33.8 4.8 45 395-440 76-120 (154)
15 3iot_A Maltose-binding protein 59.5 1.9 6.6E-05 40.3 -0.0 11 320-330 382-392 (449)
16 2fu2_A Hypothetical protein SP 59.1 3.5 0.00012 33.7 1.5 34 404-437 4-39 (102)
17 1ggw_A Protein (CDC4P); light 55.9 14 0.00047 27.9 4.2 37 395-433 86-122 (140)
18 3i5g_C Myosin catalytic light 53.7 13 0.00044 30.5 4.0 37 395-433 95-131 (159)
19 1wdc_B Scallop myosin; calcium 51.0 19 0.00066 27.7 4.4 37 395-433 97-133 (156)
20 3r45_A Histone H3-like centrom 51.0 9.6 0.00033 34.4 3.1 43 397-439 73-121 (156)
21 2kn2_A Calmodulin; S MAPK phos 51.0 26 0.00091 25.0 5.0 37 395-433 19-55 (92)
22 3nqu_A Histone H3-like centrom 49.9 11 0.00039 33.3 3.3 43 397-439 57-105 (140)
23 1s6j_A CDPK, calcium-dependent 49.8 25 0.00085 24.8 4.6 36 395-433 33-69 (87)
24 2qac_A Myosin A tail domain in 48.2 35 0.0012 25.9 5.5 43 395-439 94-144 (146)
25 1m45_A MLC1P, myosin light cha 48.0 17 0.00058 27.6 3.7 37 395-433 93-129 (148)
26 1wlz_A DJBP, CAP-binding prote 46.8 20 0.0007 26.4 3.9 37 395-433 34-70 (105)
27 2jnf_A Troponin C; stretch act 46.4 33 0.0011 26.2 5.1 37 395-433 101-137 (158)
28 2nqb_D Histone H2B; nucleosome 45.9 15 0.0005 32.1 3.3 36 405-440 37-72 (123)
29 2b1u_A Calmodulin-like protein 45.8 28 0.00095 23.4 4.1 37 395-433 16-52 (71)
30 1exr_A Calmodulin; high resolu 44.6 38 0.0013 26.0 5.2 37 395-433 93-129 (148)
31 1elk_A Target of MYB1; superhe 44.1 22 0.00076 30.5 4.2 35 401-435 93-128 (157)
32 2mys_B Myosin; muscle protein, 43.8 27 0.00092 27.2 4.3 37 395-433 105-141 (166)
33 3i5g_B Myosin regulatory light 43.7 20 0.00069 29.1 3.7 38 394-433 94-131 (153)
34 3b0b_C CENP-X, centromere prot 43.5 23 0.00079 28.5 3.9 44 397-440 4-49 (81)
35 1tzy_C Histone H3; histone-fol 43.1 26 0.0009 30.7 4.5 43 397-439 58-104 (136)
36 2bl0_B Myosin regulatory light 43.1 22 0.00074 26.7 3.5 37 395-433 86-122 (145)
37 2kgr_A Intersectin-1; structur 41.9 38 0.0013 26.6 4.9 35 395-433 24-58 (111)
38 2kz2_A Calmodulin, CAM; TR2C, 41.8 34 0.0012 25.5 4.5 37 395-433 39-75 (94)
39 1w7j_B Myosin light chain 1; m 41.8 24 0.00083 26.8 3.7 37 395-433 97-133 (151)
40 1tzy_B Histone H2B; histone-fo 41.6 19 0.00064 31.6 3.3 35 406-440 41-75 (126)
41 2pmy_A RAS and EF-hand domain- 41.5 31 0.0011 25.3 4.1 34 395-433 37-71 (91)
42 3nso_A Protein S100-A3; EF-han 41.4 50 0.0017 26.2 5.6 37 397-433 23-63 (101)
43 2opo_A Polcalcin CHE A 3; calc 41.0 33 0.0011 24.2 4.1 35 395-432 21-55 (86)
44 3nqj_A Histone H3-like centrom 40.6 22 0.00075 28.8 3.4 39 401-439 3-47 (82)
45 1rro_A RAT oncomodulin; calciu 40.4 30 0.001 25.4 3.9 39 395-433 51-90 (108)
46 1qv0_A Obelin, OBL; photoprote 40.4 30 0.001 27.5 4.1 36 395-432 123-158 (195)
47 2ktg_A Calmodulin, putative; e 39.9 38 0.0013 23.7 4.3 37 395-433 24-60 (85)
48 1bu3_A Calcium-binding protein 39.1 47 0.0016 24.3 4.8 38 395-433 52-91 (109)
49 3qrx_A Centrin; calcium-bindin 38.9 41 0.0014 26.0 4.6 37 395-433 111-147 (169)
50 2ck3_A ATP synthase subunit al 37.8 15 0.00052 37.9 2.5 32 408-439 477-508 (510)
51 1tiz_A Calmodulin-related prot 37.5 51 0.0017 21.7 4.4 37 395-433 11-47 (67)
52 1avs_A Troponin C; muscle cont 37.1 45 0.0015 23.9 4.3 36 395-433 30-66 (90)
53 1juq_A ADP-ribosylation factor 36.8 40 0.0014 29.5 4.7 37 401-437 89-128 (171)
54 1k9u_A Polcalcin PHL P 7; poll 36.6 31 0.0011 23.9 3.3 34 395-430 13-46 (78)
55 2ovk_B RLC, myosin regulatory 36.5 31 0.0011 26.4 3.6 38 394-433 94-131 (153)
56 1wy9_A Allograft inflammatory 35.9 59 0.002 26.0 5.3 38 394-433 57-94 (147)
57 3g2s_A C-terminal fragment of 35.7 34 0.0012 29.5 4.0 36 401-436 87-125 (149)
58 2mys_C Myosin; muscle protein, 35.0 51 0.0017 24.6 4.5 35 395-431 95-129 (149)
59 3ox6_A Calcium-binding protein 34.7 48 0.0016 24.8 4.3 37 395-433 98-135 (153)
60 4dra_E Centromere protein X; D 34.5 41 0.0014 27.4 4.0 44 397-440 8-53 (84)
61 2r9v_A ATP synthase subunit al 34.3 15 0.00052 38.0 1.8 31 408-438 482-512 (515)
62 2bl0_C Myosin regulatory light 33.3 56 0.0019 24.5 4.5 37 395-433 89-125 (142)
63 5pal_A Parvalbumin; calcium-bi 32.9 48 0.0016 24.3 4.0 38 395-432 51-89 (109)
64 3fs7_A Parvalbumin, thymic; ca 32.7 38 0.0013 24.9 3.4 39 395-433 52-91 (109)
65 2obh_A Centrin-2; DNA repair c 32.5 83 0.0028 24.2 5.5 35 395-432 89-124 (143)
66 3j04_B Myosin regulatory light 32.0 50 0.0017 24.7 4.0 38 394-433 85-122 (143)
67 2f2o_A Calmodulin fused with c 31.0 71 0.0024 25.0 4.9 37 395-433 94-130 (179)
68 1r4g_A RNA polymerase alpha su 30.5 64 0.0022 24.8 4.2 41 399-441 13-53 (53)
69 2yfv_A Histone H3-like centrom 30.4 34 0.0011 28.5 3.0 43 397-439 23-72 (100)
70 2lv7_A Calcium-binding protein 30.2 48 0.0016 25.7 3.7 36 395-431 46-81 (100)
71 1fx0_A ATP synthase alpha chai 30.1 17 0.00059 37.4 1.5 32 408-439 470-501 (507)
72 1mhq_A ADP-ribosylation factor 30.0 67 0.0023 27.5 4.9 37 401-437 77-116 (148)
73 3oaa_A ATP synthase subunit al 29.9 14 0.00049 38.2 0.8 31 408-438 480-510 (513)
74 2lhi_A Calmodulin, serine/thre 29.7 73 0.0025 26.3 5.0 36 395-431 94-129 (176)
75 1rwy_A Parvalbumin alpha; EF-h 29.6 60 0.002 23.7 4.0 39 395-433 51-90 (109)
76 2hue_B Histone H3; mini beta s 29.5 56 0.0019 26.1 4.0 39 401-439 3-45 (77)
77 1x5b_A Signal transducing adap 29.1 45 0.0016 28.9 3.7 34 401-436 91-124 (163)
78 3hc1_A Uncharacterized HDOD do 29.1 31 0.001 31.6 2.8 30 406-437 265-294 (305)
79 2joj_A Centrin protein; N-term 29.0 54 0.0018 22.4 3.5 37 395-433 17-53 (77)
80 3fwb_A Cell division control p 28.8 53 0.0018 25.0 3.7 37 395-433 106-142 (161)
81 2jjz_A Ionized calcium-binding 28.5 87 0.003 25.0 5.1 38 394-433 59-96 (150)
82 1zpy_A Hypothetical protein NE 27.9 22 0.00074 29.8 1.4 32 406-437 23-62 (95)
83 1wer_A P120GAP; GTPase activat 27.8 57 0.002 30.7 4.5 38 404-441 98-148 (334)
84 4e2i_2 DNA polymerase alpha su 27.4 50 0.0017 26.8 3.4 34 407-440 5-46 (78)
85 3khe_A Calmodulin-like domain 26.4 65 0.0022 25.4 3.9 35 395-433 133-167 (191)
86 2lnk_A Protein S100-A4; EF-han 26.4 94 0.0032 25.1 5.0 35 397-431 35-74 (113)
87 2d58_A Allograft inflammatory 26.2 89 0.003 23.3 4.5 37 395-433 42-78 (107)
88 1taf_B TFIID TBP associated fa 26.2 1.1E+02 0.0037 24.0 5.0 41 398-439 3-43 (70)
89 1c7v_A CAVP, calcium vector pr 26.0 50 0.0017 23.0 2.9 38 395-433 18-55 (81)
90 1pva_A Parvalbumin; calcium bi 25.8 62 0.0021 23.6 3.5 39 395-433 52-91 (110)
91 3akb_A Putative calcium bindin 25.8 88 0.003 23.8 4.4 35 395-433 108-142 (166)
92 1dtl_A Cardiac troponin C; hel 25.6 42 0.0014 25.6 2.6 37 395-433 105-141 (161)
93 3k21_A PFCDPK3, calcium-depend 25.6 1.2E+02 0.004 24.8 5.5 29 395-423 132-160 (191)
94 3zwh_A Protein S100-A4; Ca-bin 25.4 1.1E+02 0.0038 24.1 5.1 37 397-433 26-66 (104)
95 4ds7_A Calmodulin, CAM; protei 25.3 90 0.0031 23.2 4.4 37 395-433 94-130 (147)
96 2y5i_A S100Z, S100 calcium bin 24.8 1E+02 0.0035 23.7 4.7 36 397-433 23-63 (99)
97 2yru_A Steroid receptor RNA ac 24.7 39 0.0013 28.6 2.4 34 403-436 34-73 (118)
98 1k2h_A S100A1, S-100 protein, 24.5 1.2E+02 0.004 21.6 4.7 17 397-413 22-39 (93)
99 3pm8_A PFCDPK2, calcium-depend 24.4 29 0.00098 28.8 1.6 39 395-433 139-177 (197)
100 3rru_A TOM1L1 protein; structu 24.3 29 0.00099 30.1 1.6 35 401-435 93-128 (152)
101 2bec_A Calcineurin B homologou 24.2 1.2E+02 0.0039 24.6 5.1 34 395-430 124-159 (202)
102 1c07_A Protein (epidermal grow 24.1 84 0.0029 23.6 4.0 35 395-433 20-54 (95)
103 2hsb_A Hypothetical UPF0332 pr 24.0 1E+02 0.0035 24.2 4.7 24 416-439 95-118 (126)
104 1vp7_A Exodeoxyribonuclease VI 23.9 57 0.002 27.4 3.3 36 404-439 36-77 (100)
105 1qjt_A EH1, epidermal growth f 23.8 81 0.0028 24.2 4.0 35 395-433 21-55 (99)
106 2hpk_A Photoprotein berovin; s 23.7 74 0.0025 25.9 3.9 33 395-430 138-170 (208)
107 2pvb_A Protein (parvalbumin); 23.7 70 0.0024 23.4 3.4 39 395-433 51-90 (108)
108 3b0b_B CENP-S, centromere prot 23.6 34 0.0012 28.8 1.9 25 416-440 36-60 (107)
109 1eg3_A Dystrophin; EF-hand lik 23.5 63 0.0021 30.4 3.8 44 396-439 178-240 (261)
110 3g2b_A Coenzyme PQQ synthesis 23.5 26 0.0009 28.2 1.1 43 392-434 39-90 (95)
111 1qx2_A Vitamin D-dependent cal 23.4 38 0.0013 23.0 1.8 37 395-431 16-54 (76)
112 1fi6_A EH domain protein REPS1 23.0 86 0.0029 23.3 3.8 35 394-433 18-53 (92)
113 1n1j_B NF-YC; histone-like PAI 22.9 92 0.0031 25.0 4.2 46 395-440 13-58 (97)
114 1uhk_A Aequorin 2, aequorin; E 22.8 75 0.0026 24.9 3.6 37 395-433 119-155 (191)
115 2keb_A DNA polymerase subunit 22.7 41 0.0014 28.6 2.2 33 407-439 28-68 (101)
116 3sjs_A URE3-BP sequence specif 22.6 85 0.0029 26.6 4.2 37 395-433 127-163 (220)
117 1top_A Troponin C; contractIle 22.5 1.2E+02 0.004 23.0 4.6 37 395-433 106-142 (162)
118 3jvo_A GP6; 13-membered ring, 22.3 84 0.0029 25.8 3.9 38 400-440 7-44 (108)
119 1xk4_C Calgranulin B; S100 fam 22.2 90 0.0031 24.3 4.0 19 397-415 25-45 (113)
120 3mhs_B Protein SUS1; multi-pro 22.1 34 0.0012 28.1 1.5 35 406-440 57-93 (96)
121 3gcg_B MAP, L0028 (mitochondri 21.8 96 0.0033 28.5 4.5 32 404-440 111-147 (172)
122 3h4s_E KCBP interacting Ca2+-b 21.7 1E+02 0.0036 24.0 4.3 21 395-415 50-70 (135)
123 3v9r_B MHF2, uncharacterized p 21.7 51 0.0018 27.4 2.5 40 401-440 1-42 (88)
124 3e3r_A Calcyphosin, calcyphosi 21.6 1.5E+02 0.0051 23.6 5.2 36 395-432 47-82 (204)
125 2kax_A Protein S100-A5; EF-han 21.5 1E+02 0.0034 22.9 4.0 35 397-431 23-59 (92)
126 1alv_A Calpain, S-camld; calci 21.5 90 0.0031 24.6 3.9 37 395-433 87-123 (173)
127 3u0k_A Rcamp; fluorescent prot 21.3 1.1E+02 0.0037 31.3 5.3 35 395-432 385-420 (440)
128 1juo_A Sorcin; calcium-binding 21.1 1.4E+02 0.0049 24.2 5.1 44 394-439 112-163 (198)
129 1s6c_A KV4 potassium channel-i 21.1 1.1E+02 0.0038 24.0 4.3 20 395-414 102-121 (183)
130 2lmt_A Calmodulin-related prot 20.6 94 0.0032 24.2 3.8 36 395-433 93-129 (148)
131 2ovk_C Myosin catalytic light 20.6 86 0.003 24.1 3.5 35 394-430 94-128 (159)
132 3fay_A P195, RAS GTPase-activa 20.5 64 0.0022 31.2 3.3 16 426-441 178-193 (387)
133 3k6c_A Uncharacterized protein 20.4 37 0.0013 28.5 1.4 21 417-437 42-62 (95)
134 2hps_A Coelenterazine-binding 20.3 1.1E+02 0.0037 24.1 4.1 37 395-433 112-148 (186)
135 1s6i_A CDPK, calcium-dependent 20.2 72 0.0025 26.2 3.1 35 395-433 92-126 (188)
No 1
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=99.60 E-value=4e-16 Score=125.17 Aligned_cols=44 Identities=50% Similarity=0.908 Sum_probs=41.4
Q ss_pred CCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhcC
Q 013514 398 GNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVSS 441 (441)
Q Consensus 398 gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVvS 441 (441)
..+||+|++|+|||++|||++.||+||||+||+|||||||+|++
T Consensus 2 s~~vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~ 45 (76)
T 1h3o_B 2 SHMVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVT 45 (76)
T ss_dssp -CCSSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999973
No 2
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=93.99 E-value=0.032 Score=43.46 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=37.6
Q ss_pred CCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 398 GNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 398 gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
|.+.|-+..+.-||+++.|+..+..|+.++|.+.+.|||+.++
T Consensus 1 g~~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la 43 (76)
T 3b0c_W 1 GRRTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLA 43 (76)
T ss_dssp ---CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999775
No 3
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=88.82 E-value=0.38 Score=36.56 Aligned_cols=39 Identities=15% Similarity=0.391 Sum_probs=35.3
Q ss_pred ccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 401 VLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
.|.|-.+.-|+|+.+ ...+.+|+.+.|.+++.+|++.|+
T Consensus 6 ~lp~a~v~Rl~r~~g-~~ris~~a~~~l~e~~~~~~~~v~ 44 (70)
T 1ku5_A 6 ELPIAPVDRLIRKAG-AERVSEQAAKVLAEYLEEYAIEIA 44 (70)
T ss_dssp CSCHHHHHHHHHHTT-CSEECHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHcC-cceeCHHHHHHHHHHHHHHHHHHH
Confidence 478889999999985 689999999999999999999885
No 4
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=88.57 E-value=0.36 Score=39.91 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=38.6
Q ss_pred CCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 396 EFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 396 ~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
.++.+-|+|.-|..|++.... ..|.+|+.|.|.++.++|++.|+
T Consensus 23 r~~i~~ip~~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~ 66 (102)
T 1id3_B 23 RDNIQGITKPAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVI 66 (102)
T ss_dssp -CCGGGSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHH
Confidence 466777999999999999865 78999999999999999999985
No 5
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=87.48 E-value=0.48 Score=37.58 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=38.3
Q ss_pred CCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 397 FGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 397 ~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
++.+-|+|..+..|.+.... ..|.+|+.|.|.++.++|++.|+
T Consensus 6 ~~~~~ip~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~ 48 (84)
T 2hue_C 6 DNIQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVI 48 (84)
T ss_dssp GGCCSSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHH
Confidence 55667999999999999865 78999999999999999999885
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=86.65 E-value=0.63 Score=34.90 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=34.3
Q ss_pred cchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 402 LTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 402 LtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
|.|-.++-|||++ ....+..|..++|-+.+++||+.++
T Consensus 3 lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~ 40 (68)
T 1b67_A 3 LPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIA 40 (68)
T ss_dssp SCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999 6789999999999999999999875
No 7
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=84.63 E-value=0.76 Score=37.66 Aligned_cols=44 Identities=18% Similarity=0.159 Sum_probs=38.8
Q ss_pred CCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 396 EFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 396 ~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
.+..+-|.|..|..|++.... +.|.+|+.|.|.++.++|++.|+
T Consensus 24 r~~~~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~ 67 (103)
T 1tzy_D 24 RDNIQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVI 67 (103)
T ss_dssp CCGGGGSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHH
Confidence 355566999999999999987 78999999999999999999985
No 8
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=83.25 E-value=0.87 Score=37.39 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=35.5
Q ss_pred CCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 397 FGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 397 ~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
+..+-|.|..|..|++.... ..|.+|+.|.|.++.++|++.|+
T Consensus 25 ~~~~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~ 67 (103)
T 2yfw_B 25 DNIQGITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVI 67 (103)
T ss_dssp -----CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHH
Confidence 44555999999999999977 78999999999999999999985
No 9
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=79.16 E-value=1.8 Score=35.37 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=35.1
Q ss_pred ccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 401 VLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
-|+|+++..|++.|. +..+.++|..+|--||-.||-.+|
T Consensus 16 ~f~k~~vKrl~~~~~-~~~v~~~v~i~v~glaKvfVgelV 54 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVV 54 (89)
T ss_dssp CCCHHHHHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHH
Confidence 488999999999996 567899999999999999998876
No 10
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=78.99 E-value=2 Score=34.15 Aligned_cols=44 Identities=7% Similarity=0.258 Sum_probs=37.2
Q ss_pred CCCcccchhHHHHHHHhc-CCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 397 FGNRILTKRSIQELVNQI-DPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 397 ~gnrVLtKrKLqELVrQV-DP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
+.+..|.+..+.-||+++ .....+..|..++|-+.+.+||..++
T Consensus 4 ~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~ 48 (93)
T 1n1j_A 4 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFIT 48 (93)
T ss_dssp ---CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHH
Confidence 356688999999999999 45789999999999999999998775
No 11
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=75.53 E-value=2 Score=35.96 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=32.9
Q ss_pred CcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 399 nrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
+.-|.|--|..|++.. ...++.+|+.|.|.+++.+|++.|+
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~ 45 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQIS 45 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHH
Confidence 4457788888999988 6789999999999999999999885
No 12
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=65.53 E-value=7.1 Score=30.55 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=29.2
Q ss_pred hHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 405 RSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 405 rKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
+-|..|++...- +.++++|...|||++.+++.+|+
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il 39 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSIL 39 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHH
Confidence 346677887665 68999999999999999999875
No 13
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=62.52 E-value=4.1 Score=34.84 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=34.5
Q ss_pred CCCcccchhHHHHHHHhcCC-CCCCChHHHHHHHHHHHHHhhhhc
Q 013514 397 FGNRILTKRSIQELVNQIDP-SERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 397 ~gnrVLtKrKLqELVrQVDP-~e~LDpDVEElLLdLADDFVdSVv 440 (441)
..+..|-+.+|.-||++++| ...+..|+.++|.+.+..||..++
T Consensus 5 ~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt 49 (128)
T 2byk_B 5 IEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVT 49 (128)
T ss_dssp ------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999998765 789999999999999999998775
No 14
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=60.88 E-value=9.8 Score=33.80 Aligned_cols=45 Identities=11% Similarity=0.338 Sum_probs=40.7
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
.+.++..|.+-.+.-|+|+- ..+++..|..|.|-+++.+|++.|+
T Consensus 76 ~d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~ 120 (154)
T 1f1e_A 76 EDYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELG 120 (154)
T ss_dssp TTCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHH
Confidence 34677789999999999998 7889999999999999999999986
No 15
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=59.50 E-value=1.9 Score=40.34 Aligned_cols=11 Identities=45% Similarity=0.486 Sum_probs=3.0
Q ss_pred hhcccccCCCC
Q 013514 320 QHLSSVQPQQS 330 (441)
Q Consensus 320 qqlsq~QqqQ~ 330 (441)
+++.+.|+||+
T Consensus 382 ~~~~~~~~~~~ 392 (449)
T 3iot_A 382 ESLKSFQQQQQ 392 (449)
T ss_dssp HHHHHTC----
T ss_pred HHHHhhccccc
Confidence 44444443333
No 16
>2fu2_A Hypothetical protein SPY2152; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.15A {Streptococcus pyogenes}
Probab=59.12 E-value=3.5 Score=33.72 Aligned_cols=34 Identities=9% Similarity=0.290 Sum_probs=28.8
Q ss_pred hhHHHHHHHhc--CCCCCCChHHHHHHHHHHHHHhh
Q 013514 404 KRSIQELVNQI--DPSERLDPDVEDILVDIAEDFVE 437 (441)
Q Consensus 404 KrKLqELVrQV--DP~e~LDpDVEElLLdLADDFVd 437 (441)
+++|.++|+++ |+..+.|+|..++|++.|++-..
T Consensus 4 ~~~L~~~i~~ay~d~ev~~~~~L~~~il~aa~~L~k 39 (102)
T 2fu2_A 4 EKEILDALSKVYSEQVIQADDYFRQAIFELASQLEK 39 (102)
T ss_dssp HHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChhhccCHHHHHHHHHHHHHhhc
Confidence 55777777777 88999999999999999988654
No 17
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=55.88 E-value=14 Score=27.94 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=26.8
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..++++.-+.|++.+|
T Consensus 86 D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~~~d 122 (140)
T 1ggw_A 86 DKDATGMIGVGELRYVLTSLG--EKLSNEEMDELLKGVP 122 (140)
T ss_dssp CSSCSSCCCHHHHHHHHHHHH--SCSCHHHHHHHHHHTT
T ss_pred CCCCCCcEeHHHHHHHHHHcC--CCCCHHHHHHHHHhcc
Confidence 456777899999999999884 4466665555666665
No 18
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=53.69 E-value=13 Score=30.49 Aligned_cols=37 Identities=16% Similarity=0.391 Sum_probs=26.4
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. +.|+++--+.|+..||
T Consensus 95 D~d~~G~I~~~el~~~l~~~g--~~ls~~e~~~l~~~~D 131 (159)
T 3i5g_C 95 DREGQGLISSAEIRNVLKMLG--ERITEDQCNDIFTFCD 131 (159)
T ss_dssp CTTSSSEECHHHHHHHHHHSS--SCCCHHHHHHHHHHTT
T ss_pred hcCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHhC
Confidence 356777899999999999885 4566554445555555
No 19
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=51.04 E-value=19 Score=27.74 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=27.1
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..|+++..+.|++.+|
T Consensus 97 D~d~~G~I~~~el~~~l~~~g--~~~~~~~~~~~~~~~d 133 (156)
T 1wdc_B 97 DEQETKKLNIEYIKDLLENMG--DNFNKDEMRMTFKEAP 133 (156)
T ss_dssp CTTCCSCEEHHHHHHHHHHSS--SCCCHHHHHHHHHHCC
T ss_pred CcCCCCccCHHHHHHHHHHhC--CCCCHHHHHHHHHhcC
Confidence 456777899999999999884 4576666566666664
No 20
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=51.04 E-value=9.6 Score=34.40 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=30.9
Q ss_pred CCCcccchhHHHHHHHhcC------CCCCCChHHHHHHHHHHHHHhhhh
Q 013514 397 FGNRILTKRSIQELVNQID------PSERLDPDVEDILVDIAEDFVESV 439 (441)
Q Consensus 397 ~gnrVLtKrKLqELVrQVD------P~e~LDpDVEElLLdLADDFVdSV 439 (441)
.++-+|-|--++-||+||. -++.+..++.+.|-|.|++|+..+
T Consensus 73 SteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~L 121 (156)
T 3r45_A 73 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHL 121 (156)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999996 345666777777777777776543
No 21
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=51.04 E-value=26 Score=25.04 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=23.7
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..++++..+.|+..+|
T Consensus 19 D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~l~~~~d 55 (92)
T 2kn2_A 19 DKDQNGYISASELRHVMINLG--EKLTDEEVEQMIKEAD 55 (92)
T ss_dssp CTTCSSEECHHHHHHHHHHTT--CCCCHHHHHHHHHHHC
T ss_pred CCCCCCeEcHHHHHHHHHHhC--CCCCHHHHHHHHHHhC
Confidence 346667888999999998874 3345444444455554
No 22
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=49.85 E-value=11 Score=33.27 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=33.1
Q ss_pred CCCcccchhHHHHHHHhcC------CCCCCChHHHHHHHHHHHHHhhhh
Q 013514 397 FGNRILTKRSIQELVNQID------PSERLDPDVEDILVDIAEDFVESV 439 (441)
Q Consensus 397 ~gnrVLtKrKLqELVrQVD------P~e~LDpDVEElLLdLADDFVdSV 439 (441)
+++-+|-|--++-||+||. -++.+..++.+.|-|.+++|+..+
T Consensus 57 st~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~L 105 (140)
T 3nqu_A 57 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHL 105 (140)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHH
Confidence 6667888999999999996 467788888888888888877654
No 23
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=49.81 E-value=25 Score=24.82 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=24.4
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCCh-HHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDP-DVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDp-DVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+.. .+.+ +|++ |+..+|
T Consensus 33 D~d~~G~i~~~el~~~l~~~~~--~~~~~~~~~-l~~~~d 69 (87)
T 1s6j_A 33 DTDNSGTITFDELKDGLKRVGS--ELMESEIKD-LMDAAD 69 (87)
T ss_dssp CTTCSSCEEHHHHHHHHHTTTS--SCCHHHHHH-HHHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHH-HHHHhC
Confidence 4567778999999999998853 3444 4555 445543
No 24
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=48.18 E-value=35 Score=25.91 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=28.8
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCCh-HHHHHHHHH-------HHHHhhhh
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDP-DVEDILVDI-------AEDFVESV 439 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDp-DVEElLLdL-------ADDFVdSV 439 (441)
+.+++-.|++..|..+++.+. ..+++ +|++++-.+ -+||+.-+
T Consensus 94 D~d~~G~I~~~el~~~l~~~g--~~~~~~~~~~~~~~~d~dg~i~~~eF~~~l 144 (146)
T 2qac_A 94 DNNCTGYLTKSQMKNILTTWG--DALTDQEAIDALNAFSSEDNIDYKLFCEDI 144 (146)
T ss_dssp CTTCSSEEEHHHHHHHHHHSS--SCCCHHHHHHHHHHHCSSSEEEHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCCcCcHHHHHHHH
Confidence 456777899999999999884 44655 455555544 13666544
No 25
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=47.99 E-value=17 Score=27.57 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=26.6
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..++++.-+.|++.+|
T Consensus 93 D~d~~G~I~~~el~~~l~~~g--~~~~~~~~~~~~~~~d 129 (148)
T 1m45_A 93 DKESTGKVSVGDLRYMLTGLG--EKLTDAEVDELLKGVE 129 (148)
T ss_dssp CSSSSSEEEHHHHHHHHHHST--TCCCHHHHHHHHTTCC
T ss_pred CCCCCCcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHhC
Confidence 457777899999999999884 4566655555665554
No 26
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=46.80 E-value=20 Score=26.40 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=23.4
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|.++++.+. ..++++..+.|+..+|
T Consensus 34 D~d~~G~i~~~el~~~l~~~g--~~~~~~e~~~l~~~~d 70 (105)
T 1wlz_A 34 DTMKTNTISREEFRAICNRRV--QILTDEQFDRLWNEMP 70 (105)
T ss_dssp CTTCSSCBCHHHHHHHHHHHT--CCCCHHHHHHHHTTSC
T ss_pred CCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHcC
Confidence 456667888888998888874 3344444344444444
No 27
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=46.39 E-value=33 Score=26.21 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=26.2
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..++++..+.|++.+|
T Consensus 101 D~d~~G~I~~~el~~~l~~~g--~~~~~~~~~~~~~~~D 137 (158)
T 2jnf_A 101 DKEGNGYISTDVMREILAELD--ETLSSEDLDAMIDEID 137 (158)
T ss_dssp CSSSSSSEEHHHHHHHHHHHC--TTCCHHHHHHHHHHHC
T ss_pred CCCCCCeEcHHHHHHHHHHhC--CcCCHHHHHHHHHHhC
Confidence 456777899999999999884 3465555555555554
No 28
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=45.92 E-value=15 Score=32.11 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=31.3
Q ss_pred hHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 405 RSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 405 rKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
.-|.-+|++|.|+..|..+..++|-.|++|+.|.|.
T Consensus 37 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA 72 (123)
T 2nqb_D 37 IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIA 72 (123)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999988888888888764
No 29
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=45.80 E-value=28 Score=23.41 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=24.7
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..++++.-+.|++.+|
T Consensus 16 D~d~~G~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~d 52 (71)
T 2b1u_A 16 DQDGDGHITVDELRRAMAGLG--QPLPQEELDAMIREAD 52 (71)
T ss_dssp CCSSSSEEEHHHHHHHGGGTT--CSSCHHHHHHHHHHCC
T ss_pred CCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHhC
Confidence 456677899999999998884 3455544444555544
No 30
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=44.58 E-value=38 Score=25.97 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=24.2
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. +.|+++.-+.|++.+|
T Consensus 93 D~d~~G~I~~~el~~~l~~~g--~~~~~~~~~~~~~~~d 129 (148)
T 1exr_A 93 DRDGNGLISAAELRHVMTNLG--EKLTDDEVDEMIREAD 129 (148)
T ss_dssp STTCSSCBCHHHHHHHHHHTT--CCCCHHHHHHHHHHHC
T ss_pred CCCCCCcCCHHHHHHHHHHhC--CCCCHHHHHHHHHHhC
Confidence 456677889999999998875 3455444444444443
No 31
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=44.05 E-value=22 Score=30.52 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=25.6
Q ss_pred ccchhHHHH-HHHhcCCCCCCChHHHHHHHHHHHHH
Q 013514 401 ILTKRSIQE-LVNQIDPSERLDPDVEDILVDIAEDF 435 (441)
Q Consensus 401 VLtKrKLqE-LVrQVDP~e~LDpDVEElLLdLADDF 435 (441)
|-+|+-|+| ||+-|.+....+.+|.+-+|+|.++.
T Consensus 93 va~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 93 VASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 557888899 89989877666778876666665443
No 32
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=43.83 E-value=27 Score=27.19 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=25.6
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..|+++..+.|++.+|
T Consensus 105 D~d~~G~I~~~el~~~l~~~g--~~~~~~~~~~~~~~~D 141 (166)
T 2mys_B 105 DPDGKGSIKKSFLEELLTTGG--GRFTPEEIKNMWAAFP 141 (166)
T ss_pred CCCCCcceeHHHHHHHHHHcC--CCCCHHHHHHHHHhcC
Confidence 457778899999999999874 3455554444555554
No 33
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=43.68 E-value=20 Score=29.08 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=27.5
Q ss_pred cCCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 394 SDEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 394 ~~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
.+.+++-.|++..|..+++.+. +.|+++.-+-|+..||
T Consensus 94 fD~d~~G~I~~~el~~~l~~~g--~~ls~~ei~~~~~~~D 131 (153)
T 3i5g_B 94 FDEDGQGFIPEDYLKDLLENMG--DNFSKEEIKNVWKDAP 131 (153)
T ss_dssp TCSSCSSCCCHHHHHHHHHSSS--SCCCHHHHHHHHTTCC
T ss_pred cccCCCCeEeHHHHHHHHHHcC--CcCCHHHHHHHHHHhC
Confidence 3457788999999999999885 4576654445556665
No 34
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=43.55 E-value=23 Score=28.51 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=35.9
Q ss_pred CCCcccchhHHHHHHHhc--CCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 397 FGNRILTKRSIQELVNQI--DPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 397 ~gnrVLtKrKLqELVrQV--DP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
+.+..+.++-|..|++.. |.+.++.+|+-+++-++-|=||...+
T Consensus 4 ~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv 49 (81)
T 3b0b_C 4 EREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAA 49 (81)
T ss_dssp ---CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHH
Confidence 456678888889998887 68999999999999999999997653
No 35
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=43.11 E-value=26 Score=30.69 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=34.7
Q ss_pred CCCcccchhHHHHHHHhc----CCCCCCChHHHHHHHHHHHHHhhhh
Q 013514 397 FGNRILTKRSIQELVNQI----DPSERLDPDVEDILVDIAEDFVESV 439 (441)
Q Consensus 397 ~gnrVLtKrKLqELVrQV----DP~e~LDpDVEElLLdLADDFVdSV 439 (441)
+++-+|-|--++-||++| ..+..+..++.+.|-|.+++|+..+
T Consensus 58 st~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~L 104 (136)
T 1tzy_C 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGL 104 (136)
T ss_dssp CCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHH
Confidence 566788899999999999 2468888888888888888887654
No 36
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=43.06 E-value=22 Score=26.66 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=26.1
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..++++..+.|++.+|
T Consensus 86 D~d~~G~i~~~e~~~~l~~~g--~~~~~~~~~~~~~~~d 122 (145)
T 2bl0_B 86 DKEGNGTIQEAELRQLLLNLG--DALTSSEVEELMKEVS 122 (145)
T ss_dssp CSSSSSEEEHHHHHHHHHHSS--SCCCHHHHHHHHTTCC
T ss_pred CCCCCCeEcHHHHHHHHHHcC--CCCCHHHHHHHHHHcC
Confidence 456777899999999999884 4466655555565554
No 37
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=41.91 E-value=38 Score=26.58 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=23.0
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|.++++ ...++++..+-|++.+|
T Consensus 24 D~d~dG~I~~~El~~~l~----~~~~~~~~~~~i~~~~D 58 (111)
T 2kgr_A 24 DKTMSGHLTGPQARTILM----QSSLPQAQLASIWNLSD 58 (111)
T ss_dssp SCSSCCEEEHHHHHHHHH----TTCCCHHHHHHHHHHHC
T ss_pred CCCCCCcCcHHHHHHHHH----hCCCCHHHHHHHHHHHC
Confidence 456667889888988888 34455544444556665
No 38
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=41.85 E-value=34 Score=25.47 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=24.1
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|.++++.+.. .++++..+.|++.+|
T Consensus 39 D~d~~G~I~~~El~~~l~~~g~--~~~~~e~~~l~~~~D 75 (94)
T 2kz2_A 39 DKDGNGYISAAELRHVMTNLGE--KLTDEEVDEMIREAD 75 (94)
T ss_dssp CTTCCSCBCHHHHHHHHHHHTC--CCCHHHHHHHHHHHC
T ss_pred CCCCcCcCCHHHHHHHHHHhCC--CCCHHHHHHHHHHhC
Confidence 4566778999999999998853 345444444444443
No 39
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=41.82 E-value=24 Score=26.80 Aligned_cols=37 Identities=14% Similarity=0.289 Sum_probs=26.4
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..|+++..+.|++.+|
T Consensus 97 D~d~~G~I~~~el~~~l~~~g--~~~~~~~~~~~~~~~d 133 (151)
T 1w7j_B 97 DKEGNGKVMGAELRHVLTTLG--EKMTEEEVETVLAGHE 133 (151)
T ss_dssp CTTSSSEEEHHHHHHHHHHSS--SCCCHHHHHHHHTTCC
T ss_pred CCCCCCcCcHHHHHHHHHHcC--CCCCHHHHHHHHHhcc
Confidence 457777899999999999884 4566655555555554
No 40
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=41.64 E-value=19 Score=31.58 Aligned_cols=35 Identities=14% Similarity=0.394 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 406 SIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 406 KLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
-|.-+|++|.|+..|..+..++|-.|++|+.|.+.
T Consensus 41 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA 75 (126)
T 1tzy_B 41 YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIA 75 (126)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999988888888888764
No 41
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=41.52 E-value=31 Score=25.28 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=23.1
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCCh-HHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDP-DVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDp-DVEElLLdLAD 433 (441)
+.+++-.|++..|.++++.+. +++ +|+++ ++.+|
T Consensus 37 D~d~~G~I~~~El~~~l~~~g----~~~~~~~~~-~~~~D 71 (91)
T 2pmy_A 37 DANRSGRLEREEFRALCTELR----VRPADAEAV-FQRLD 71 (91)
T ss_dssp CTTCSSSEEHHHHHHHHHHTT----CCHHHHHHH-HHHHC
T ss_pred CCCCCCCCcHHHHHHHHHHcC----cCHHHHHHH-HHHhC
Confidence 456677899999999999886 344 45544 44444
No 42
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=41.43 E-value=50 Score=26.21 Aligned_cols=37 Identities=11% Similarity=0.264 Sum_probs=24.4
Q ss_pred CCC-cccchhHHHHHHHh-cCC--CCCCChHHHHHHHHHHH
Q 013514 397 FGN-RILTKRSIQELVNQ-IDP--SERLDPDVEDILVDIAE 433 (441)
Q Consensus 397 ~gn-rVLtKrKLqELVrQ-VDP--~e~LDpDVEElLLdLAD 433 (441)
+++ -.|++..|.++++. +.. .+.++++..+-|++.+|
T Consensus 23 dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~~D 63 (101)
T 3nso_A 23 CGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLD 63 (101)
T ss_dssp SSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHH
T ss_pred CCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHhC
Confidence 344 68999999999985 542 35666654444555555
No 43
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=41.03 E-value=33 Score=24.21 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=22.7
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIA 432 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLA 432 (441)
+.+++-.|++..|.++++.+. .++++..+.|++.+
T Consensus 21 D~d~~G~i~~~el~~~l~~~g---~~~~~~~~~~~~~~ 55 (86)
T 2opo_A 21 DTNGDGKISSSELGDALKTLG---SVTPDEVRRMMAEI 55 (86)
T ss_dssp CTTCSSEEEHHHHHHHHHTTT---TCCHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHcC---CCCHHHHHHHHHHh
Confidence 446677888899999998886 34444334444444
No 44
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=40.60 E-value=22 Score=28.80 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=29.6
Q ss_pred ccchhHHHHHHHhcC------CCCCCChHHHHHHHHHHHHHhhhh
Q 013514 401 ILTKRSIQELVNQID------PSERLDPDVEDILVDIAEDFVESV 439 (441)
Q Consensus 401 VLtKrKLqELVrQVD------P~e~LDpDVEElLLdLADDFVdSV 439 (441)
+|-|--++-|||+|. -...+..++.+.|-+.+++|+..+
T Consensus 3 LI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~L 47 (82)
T 3nqj_A 3 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHL 47 (82)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHH
Confidence 456777899999996 467888888888888777776543
No 45
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=40.40 E-value=30 Score=25.43 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=24.2
Q ss_pred CCCCCcccchhHHHHHHHhcCC-CCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDP-SERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP-~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|+++.|..+++.+.. ...+.++.-+.|++.+|
T Consensus 51 D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D 90 (108)
T 1rro_A 51 DNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAAD 90 (108)
T ss_dssp CTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHHC
T ss_pred CCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHhC
Confidence 3466678888889888888753 34454444444444443
No 46
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=40.40 E-value=30 Score=27.50 Aligned_cols=36 Identities=8% Similarity=-0.047 Sum_probs=21.4
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIA 432 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLA 432 (441)
+.+++-.|++..|..+++.+. ..++++..+.|++.+
T Consensus 123 D~d~~G~I~~~El~~~l~~~g--~~~~~~~~~~~~~~~ 158 (195)
T 1qv0_A 123 DKDGSGTITLDEWKAYGKISG--ISPSQEDCEATFRHC 158 (195)
T ss_dssp C----CEECHHHHHHHHHHHS--SCCCHHHHHHHHHHS
T ss_pred cCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHh
Confidence 456777899999999998884 445554444444444
No 47
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=39.95 E-value=38 Score=23.71 Aligned_cols=37 Identities=11% Similarity=0.111 Sum_probs=23.7
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..++++..+.|+..+|
T Consensus 24 D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~~~d 60 (85)
T 2ktg_A 24 DKDNDNKLTAEELGTVMRALG--ANPTKQKISEIVKDYD 60 (85)
T ss_dssp CTTCCSEEEHHHHHHHHHTTS--SCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHhC
Confidence 456677899999999999883 3444443334444443
No 48
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=39.07 E-value=47 Score=24.35 Aligned_cols=38 Identities=5% Similarity=0.233 Sum_probs=24.6
Q ss_pred CCCCCcccchhHHHHHHHhcCC-CCCCC-hHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDP-SERLD-PDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP-~e~LD-pDVEElLLdLAD 433 (441)
+.+++-.|+++.|..+++.+.. ...+. .+|+++ ++.+|
T Consensus 52 D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~-~~~~D 91 (109)
T 1bu3_A 52 DQDKSGFIEEDELKLFLQVFSAGARALTDAETKAF-LKAGD 91 (109)
T ss_dssp CTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHH-HHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHH-HHHhC
Confidence 4566778999999999998852 23344 445554 44443
No 49
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=38.95 E-value=41 Score=26.03 Aligned_cols=37 Identities=14% Similarity=0.295 Sum_probs=25.9
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|.++++.+. ..|+++..+.|++.+|
T Consensus 111 D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~~~D 147 (169)
T 3qrx_A 111 DDDNSGTITIKDLRRVAKELG--ENLTEEELQEMIAEAD 147 (169)
T ss_dssp CTTCSSSBCHHHHHHHHHHTT--CCCCHHHHHHHHHHHC
T ss_pred CCCCCCcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHhC
Confidence 446777899999999999885 4566555555555554
No 50
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=37.78 E-value=15 Score=37.87 Aligned_cols=32 Identities=19% Similarity=0.438 Sum_probs=27.9
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHhhhh
Q 013514 408 QELVNQIDPSERLDPDVEDILVDIAEDFVESV 439 (441)
Q Consensus 408 qELVrQVDP~e~LDpDVEElLLdLADDFVdSV 439 (441)
.|++..|+.+..||+|+|+.|.+++++|.+..
T Consensus 477 ~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 508 (510)
T 2ck3_A 477 QALLGKIRTDGKISEESDAKLKEIVTNFLAGF 508 (510)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 47777888889999999999999999998754
No 51
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=37.49 E-value=51 Score=21.71 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=23.7
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..+.++.-+.|++.+|
T Consensus 11 D~d~~G~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~D 47 (67)
T 1tiz_A 11 DKNKDGKLSLDEFREVALAFS--PYFTQEDIVKFFEEID 47 (67)
T ss_dssp CTTSSSCEEHHHHHHHHHHTC--TTSCHHHHHHHHHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHHC
Confidence 345667899999999999884 3344443344444443
No 52
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=37.09 E-value=45 Score=23.87 Aligned_cols=36 Identities=8% Similarity=0.289 Sum_probs=23.4
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCCh-HHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDP-DVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDp-DVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+.- .+++ +|+++ +..+|
T Consensus 30 D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~l-~~~~D 66 (90)
T 1avs_A 30 DADGGGDISTKELGTVMRMLGQ--NPTKEELDAI-IEEVD 66 (90)
T ss_dssp CTTCSSEECHHHHHHHHHHTTC--CCCHHHHHHH-HHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHH-HHHhC
Confidence 4466778899999999998743 3444 44444 44443
No 53
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=36.84 E-value=40 Score=29.48 Aligned_cols=37 Identities=16% Similarity=0.389 Sum_probs=28.9
Q ss_pred ccchhHHHHHHHhcCCC---CCCChHHHHHHHHHHHHHhh
Q 013514 401 ILTKRSIQELVNQIDPS---ERLDPDVEDILVDIAEDFVE 437 (441)
Q Consensus 401 VLtKrKLqELVrQVDP~---e~LDpDVEElLLdLADDFVd 437 (441)
|-+|+-|+||++-|.+. ...+.+|.+-+|+|..+.-+
T Consensus 89 vas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 89 VGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 55788899999988764 36789999888888766544
No 54
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=36.64 E-value=31 Score=23.88 Aligned_cols=34 Identities=9% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVD 430 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLd 430 (441)
+.+++-.|++..|..+++.+. ..-+.++++++-.
T Consensus 13 D~~~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~ 46 (78)
T 1k9u_A 13 DTNGDGKISLSELTDALRTLG--STSADEVQRMMAE 46 (78)
T ss_dssp CTTCSSEECHHHHHHHHHHHH--TCCHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 345666788888888888886 3334445554433
No 55
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=36.52 E-value=31 Score=26.45 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=27.4
Q ss_pred cCCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 394 SDEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 394 ~~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
.+.+++-.|++..|..+++.+. ..|+++.-+.|++.+|
T Consensus 94 ~D~d~~G~I~~~el~~~l~~~g--~~~~~~~~~~~~~~~d 131 (153)
T 2ovk_B 94 FDEDGQGFIPEDYLKDLLENMG--DNFSKEEIKNVWKDAP 131 (153)
T ss_dssp TCSSCSSCCCHHHHHHHHHHSS--SCCCHHHHHHHHHHCC
T ss_pred HCCCCCCeEcHHHHHHHHHHcC--CCCCHHHHHHHHHHcC
Confidence 3457788899999999999884 4466655555666655
No 56
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=35.95 E-value=59 Score=26.05 Aligned_cols=38 Identities=13% Similarity=0.048 Sum_probs=24.6
Q ss_pred cCCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 394 SDEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 394 ~~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
.+.+++-.|++..|..+++.+. ..++++..+.|+..+|
T Consensus 57 ~D~d~dG~I~~~El~~~l~~~g--~~~~~~~~~~l~~~~D 94 (147)
T 1wy9_A 57 FDLNGNGDIDIMSLKRMLEKLG--VPKTHLELKRLIREVS 94 (147)
T ss_dssp SCCCTTSSEEHHHHHHHHHHTT--CCCCHHHHHHHHHHHC
T ss_pred HCCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHhC
Confidence 3456777899999999999884 3354443334444443
No 57
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=35.72 E-value=34 Score=29.51 Aligned_cols=36 Identities=17% Similarity=0.384 Sum_probs=27.8
Q ss_pred ccchhHHHHHHHhcCCC---CCCChHHHHHHHHHHHHHh
Q 013514 401 ILTKRSIQELVNQIDPS---ERLDPDVEDILVDIAEDFV 436 (441)
Q Consensus 401 VLtKrKLqELVrQVDP~---e~LDpDVEElLLdLADDFV 436 (441)
|-+|+-|+||++-|.+. ...+.+|.+-+|+|..+.-
T Consensus 87 ias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 87 VGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 44788899999999875 3688999988777765543
No 58
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=34.95 E-value=51 Score=24.62 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=23.5
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDI 431 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdL 431 (441)
+.+++-.|++..|..+++.+. ..++++.-+.|++.
T Consensus 95 D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~~ 129 (149)
T 2mys_C 95 DKEGNGTVMGAELRHVLATLG--EKMTEEEVEELMKG 129 (149)
T ss_pred CCCCCceEcHHHHHHHHHHhC--CCCCHHHHHHHHhh
Confidence 446677899999999998884 34555544444444
No 59
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=34.70 E-value=48 Score=24.77 Aligned_cols=37 Identities=8% Similarity=0.202 Sum_probs=23.3
Q ss_pred CCCCCcccchhHHHHHHHh-cCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQ-IDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQ-VDP~e~LDpDVEElLLdLAD 433 (441)
+.+++..|++..|.++++. +.. .++++..+.|++.+|
T Consensus 98 D~d~~G~i~~~el~~~l~~~~~~--~~~~~~~~~~~~~~d 135 (153)
T 3ox6_A 98 DTNGDGEISTSELREAMRALLGH--QVGHRDIEEIIRDVD 135 (153)
T ss_dssp CTTCSSSBCHHHHHHHHHHHHSS--CCCHHHHHHHHHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHHhcC--CCCHHHHHHHHHHhC
Confidence 4567778999999999988 432 344444444444443
No 60
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=34.45 E-value=41 Score=27.44 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=35.2
Q ss_pred CCCcccchhHHHHHHHhc--CCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 397 FGNRILTKRSIQELVNQI--DPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 397 ~gnrVLtKrKLqELVrQV--DP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
+.+..+.++-|..|++.. |.+.+|.+|+-+++-+|.|=||...+
T Consensus 8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv 53 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAA 53 (84)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 334567788888999865 68999999999999999999997643
No 61
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=34.27 E-value=15 Score=38.02 Aligned_cols=31 Identities=23% Similarity=0.484 Sum_probs=27.3
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHhhh
Q 013514 408 QELVNQIDPSERLDPDVEDILVDIAEDFVES 438 (441)
Q Consensus 408 qELVrQVDP~e~LDpDVEElLLdLADDFVdS 438 (441)
.|++..|+.+..||+|+|+.|.+++++|.+.
T Consensus 482 ~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 512 (515)
T 2r9v_A 482 QDILDDIKTKKELTSETEEKLKKAIEEFKTT 512 (515)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 4677778788899999999999999999875
No 62
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=33.25 E-value=56 Score=24.47 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=26.3
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..++++.-+.|++.+|
T Consensus 89 D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~~~d 125 (142)
T 2bl0_C 89 DPEGTGYIPKAALQDALLNLG--DRLKPHEFAEFLGITE 125 (142)
T ss_dssp CCSSCSCEEHHHHHHHHHHSS--SCCCHHHHHHHHHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHcC--CCCCHHHHHHHHHHhC
Confidence 456777899999999999884 3466655555565554
No 63
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=32.95 E-value=48 Score=24.32 Aligned_cols=38 Identities=8% Similarity=0.207 Sum_probs=24.6
Q ss_pred CCCCCcccchhHHHHHHHhcCC-CCCCChHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDP-SERLDPDVEDILVDIA 432 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP-~e~LDpDVEElLLdLA 432 (441)
+.+++..|+++.|..+++.+.. ...+.++.-+.|++.+
T Consensus 51 D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 51 DKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAG 89 (109)
T ss_dssp CTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 4567778999999999998842 3445544434444444
No 64
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=32.67 E-value=38 Score=24.89 Aligned_cols=39 Identities=8% Similarity=0.201 Sum_probs=24.6
Q ss_pred CCCCCcccchhHHHHHHHhcCC-CCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDP-SERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP-~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+.. ...+.++.-+.|++.+|
T Consensus 52 D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~D 91 (109)
T 3fs7_A 52 DQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGD 91 (109)
T ss_dssp STTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHHC
T ss_pred CCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHhC
Confidence 4466778888888888888753 34455544444445443
No 65
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=32.52 E-value=83 Score=24.17 Aligned_cols=35 Identities=14% Similarity=0.402 Sum_probs=23.6
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCC-hHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLD-PDVEDILVDIA 432 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LD-pDVEElLLdLA 432 (441)
+.+++-.|++..|..+++.+. +.+. ++|+++| +.+
T Consensus 89 D~d~~G~I~~~el~~~l~~~g--~~~~~~~~~~~~-~~~ 124 (143)
T 2obh_A 89 DDDETGKISFKNLKRVAKELG--ENLTDEELQEMI-DEA 124 (143)
T ss_dssp CTTCSSSBCHHHHHHHHHHTT--CCCCHHHHHHHH-HHH
T ss_pred CCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHH-HHh
Confidence 456677889999999998874 3354 4555554 444
No 66
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=32.01 E-value=50 Score=24.75 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=26.1
Q ss_pred cCCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 394 SDEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 394 ~~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
.+.+++-.|++..|..+++.+. ..++++.-+.|++.+|
T Consensus 85 ~D~d~~G~I~~~El~~~l~~~g--~~~~~~~~~~~~~~~D 122 (143)
T 3j04_B 85 FDEEASGFIHEDHLRELLTTMG--DRFTDEEVDEMYREAP 122 (143)
T ss_dssp SCSSSCCCCCTTTHHHHHHTSS--SCCCHHHHHHHHHHTT
T ss_pred HCCCCCCeEcHHHHHHHHHHcC--CCCCHHHHHHHHHHcC
Confidence 3457778899999999999874 4466555455555554
No 67
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=30.98 E-value=71 Score=24.99 Aligned_cols=37 Identities=19% Similarity=0.400 Sum_probs=23.4
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..++++..+.|++.+|
T Consensus 94 D~d~~G~I~~~E~~~~l~~~g--~~~~~~~~~~~~~~~D 130 (179)
T 2f2o_A 94 DKDGNGYISAAELRHVMTNLG--EKLTDEEVDEMIREAD 130 (179)
T ss_dssp CTTCSSEECHHHHHHHHHHC----CCCHHHHHHHHHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHcC
Confidence 456667788888888888874 3455554444555554
No 68
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=30.47 E-value=64 Score=24.78 Aligned_cols=41 Identities=17% Similarity=0.369 Sum_probs=28.8
Q ss_pred CcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhcC
Q 013514 399 NRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVSS 441 (441)
Q Consensus 399 nrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVvS 441 (441)
|.-|++..-+.-|+++. ..+-|+||.| |+||.+|=|+++++
T Consensus 13 nS~LS~~~K~sYi~~L~-~CktdqEV~~-~Memf~EDi~sltn 53 (53)
T 1r4g_A 13 SSPLSRAEKAAYVKSLS-KCKTDQEVKA-VMELVEEDIESLTN 53 (53)
T ss_dssp TSCCCSHHHHHHHHHHH-TCCSSHHHHH-HHHHHHHHHHHHCC
T ss_pred CCcccHHHHHHHHHHHH-HccchHHHHH-HHHHHHHHHHHhcC
Confidence 34466666666666663 4577899988 56888888888764
No 69
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=30.42 E-value=34 Score=28.53 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=29.6
Q ss_pred CCCcccchhHHHHHHHhcCC-------CCCCChHHHHHHHHHHHHHhhhh
Q 013514 397 FGNRILTKRSIQELVNQIDP-------SERLDPDVEDILVDIAEDFVESV 439 (441)
Q Consensus 397 ~gnrVLtKrKLqELVrQVDP-------~e~LDpDVEElLLdLADDFVdSV 439 (441)
+++-+|-|--++-|||+|.- ...+..++.+.|-+.|++|+..+
T Consensus 23 st~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~L 72 (100)
T 2yfv_A 23 STDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGL 72 (100)
T ss_dssp -----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999952 56777788888888888777553
No 70
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=30.16 E-value=48 Score=25.66 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=25.0
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDI 431 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdL 431 (441)
+.+++-.|++..|.++++.+.-. .-+.||++++-++
T Consensus 46 D~d~~G~I~~~El~~~l~~lg~~-~~~~ei~~l~~~~ 81 (100)
T 2lv7_A 46 DRDGNGFISKQELGTAMRSLGYM-PNEVELEVIIQRL 81 (100)
T ss_dssp CSSCSSCBCHHHHHHHHHHHTCC-CCTTTHHHHHHHH
T ss_pred cCCCCCcCCHHHHHHHHHHhCCC-CCHHHHHHHHHHH
Confidence 56788889999999999988532 2245666655443
No 71
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=30.10 E-value=17 Score=37.44 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=27.2
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHhhhh
Q 013514 408 QELVNQIDPSERLDPDVEDILVDIAEDFVESV 439 (441)
Q Consensus 408 qELVrQVDP~e~LDpDVEElLLdLADDFVdSV 439 (441)
.||+..|+.+..||+|+|+.|.++.++|.+..
T Consensus 470 ~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 501 (507)
T 1fx0_A 470 PEFQEIISSTKTFTEEAEALLKEAIQEQMERF 501 (507)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 46777777788999999999999999998753
No 72
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=29.98 E-value=67 Score=27.48 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=28.1
Q ss_pred ccchhHHHHHHHhcCCC---CCCChHHHHHHHHHHHHHhh
Q 013514 401 ILTKRSIQELVNQIDPS---ERLDPDVEDILVDIAEDFVE 437 (441)
Q Consensus 401 VLtKrKLqELVrQVDP~---e~LDpDVEElLLdLADDFVd 437 (441)
|-+|+-|+||++-|.+. ...+.+|.+-+|+|..+.-+
T Consensus 77 vas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 77 VAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44788899999988764 35789999888887665543
No 73
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=29.91 E-value=14 Score=38.22 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=27.2
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHhhh
Q 013514 408 QELVNQIDPSERLDPDVEDILVDIAEDFVES 438 (441)
Q Consensus 408 qELVrQVDP~e~LDpDVEElLLdLADDFVdS 438 (441)
.|+++.|+.+..|++|.|+.|.+++++|.+.
T Consensus 480 ~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 510 (513)
T 3oaa_A 480 APLMQEINQTGGYNDEIEGKLKGILDSFKAT 510 (513)
T ss_dssp CHHHHHHHHHCCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Confidence 4677777788899999999999999999875
No 74
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=29.72 E-value=73 Score=26.27 Aligned_cols=36 Identities=19% Similarity=0.509 Sum_probs=24.9
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDI 431 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdL 431 (441)
+.+++-.|++..|.+++..+... .-++||+++|-++
T Consensus 94 D~d~~G~I~~~el~~~l~~~g~~-~~~~ei~~l~~~~ 129 (176)
T 2lhi_A 94 DKNGDGLISAAELKHVLTSIGEK-LTDAEVDDMLREV 129 (176)
T ss_dssp CSSCSSSBCHHHHHHHHHTTTCC-CCHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHcCcc-cchHHHHHHHHhh
Confidence 45777789999999999987543 2345666665443
No 75
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=29.59 E-value=60 Score=23.70 Aligned_cols=39 Identities=8% Similarity=0.219 Sum_probs=24.8
Q ss_pred CCCCCcccchhHHHHHHHhcCC-CCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDP-SERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP-~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|+++.|..+++.+.. ...+.++..+.|++.+|
T Consensus 51 D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D 90 (109)
T 1rwy_A 51 DKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGD 90 (109)
T ss_dssp STTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHC
T ss_pred CCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC
Confidence 4566778999999999998842 23444444444444443
No 76
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=29.49 E-value=56 Score=26.12 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=30.0
Q ss_pred ccchhHHHHHHHhc----CCCCCCChHHHHHHHHHHHHHhhhh
Q 013514 401 ILTKRSIQELVNQI----DPSERLDPDVEDILVDIAEDFVESV 439 (441)
Q Consensus 401 VLtKrKLqELVrQV----DP~e~LDpDVEElLLdLADDFVdSV 439 (441)
+|-|--++-|||+| .....+..++.+.|-+.+++|+..+
T Consensus 3 li~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~l 45 (77)
T 2hue_B 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVAL 45 (77)
T ss_dssp CSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHH
Confidence 45677788999999 2467888888888888888887654
No 77
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=29.14 E-value=45 Score=28.88 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=25.2
Q ss_pred ccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHh
Q 013514 401 ILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFV 436 (441)
Q Consensus 401 VLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFV 436 (441)
|-+|+-|+||++-|++ +.+++|.+-+|+|....-
T Consensus 91 vas~~Fl~el~~l~~~--~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 91 VCSRDFATEVRAVIKN--KAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HTSHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHH
Confidence 4468889999998864 468899887777755443
No 78
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=29.09 E-value=31 Score=31.62 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHhh
Q 013514 406 SIQELVNQIDPSERLDPDVEDILVDIAEDFVE 437 (441)
Q Consensus 406 KLqELVrQVDP~e~LDpDVEElLLdLADDFVd 437 (441)
+.-+.+++-. ..+|+||+|++.++.|+|.+
T Consensus 265 ~a~~~l~~~~--g~~dp~l~~~~~~~~~~~~~ 294 (305)
T 3hc1_A 265 PSWGVIRRSL--GGSDFDEKLIVAELDSSIVE 294 (305)
T ss_dssp THHHHHHHHS--TTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCccc--ccCcHHHHHHHHHHHHHHHH
Confidence 3334444333 44599999999999999865
No 79
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=29.02 E-value=54 Score=22.40 Aligned_cols=37 Identities=5% Similarity=-0.029 Sum_probs=22.9
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..++++..+.|+..+|
T Consensus 17 D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~~~d 53 (77)
T 2joj_A 17 DTNKTGSIDYHELKVAMRALG--FDVKKPEILELMNEYD 53 (77)
T ss_dssp CCSSSSEEEHHHHHHHHHHHT--CCCHHHHHHHHHHHHC
T ss_pred CCCCCCCCcHHHHHHHHHHhC--CCCCHHHHHHHHHHHC
Confidence 345666888999999998884 3344433333444444
No 80
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=28.83 E-value=53 Score=24.96 Aligned_cols=37 Identities=8% Similarity=0.241 Sum_probs=25.3
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++..|++..|.++++.+. ..++++.-+.|++.+|
T Consensus 106 D~d~~G~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~d 142 (161)
T 3fwb_A 106 DDDHTGKISIKNLRRVAKELG--ETLTDEELRAMIEEFD 142 (161)
T ss_dssp CTTCSSEECHHHHHHHHHHTT--CCCCHHHHHHHHHTTC
T ss_pred cCCCCCeEeHHHHHHHHHHhC--CCCCHHHHHHHHHHhC
Confidence 456677899999999999875 4466555555555543
No 81
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=28.52 E-value=87 Score=25.05 Aligned_cols=38 Identities=5% Similarity=-0.020 Sum_probs=25.1
Q ss_pred cCCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 394 SDEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 394 ~~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
.+.+++-.|++..|..+++.+. ..++++..+.|++.+|
T Consensus 59 ~D~d~~G~I~~~el~~~l~~~g--~~~~~~e~~~l~~~~D 96 (150)
T 2jjz_A 59 FDLNNEGEIDLMSLKRMMEKLG--VPKTHLEMKKMISEVT 96 (150)
T ss_dssp SCCCTTSSBCHHHHHHHHHHTT--CCCCHHHHHHHHHHHH
T ss_pred hCCCCcCcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHC
Confidence 3456777899999999999884 3454444344444554
No 82
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=27.89 E-value=22 Score=29.79 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=22.5
Q ss_pred HHHHHHHhcC--------CCCCCChHHHHHHHHHHHHHhh
Q 013514 406 SIQELVNQID--------PSERLDPDVEDILVDIAEDFVE 437 (441)
Q Consensus 406 KLqELVrQVD--------P~e~LDpDVEElLLdLADDFVd 437 (441)
-|..|+.+++ -...=|++|.++|++||||=.+
T Consensus 23 ai~aL~~EleAI~~Y~q~A~~t~D~evk~vl~~iadEEke 62 (95)
T 1zpy_A 23 AIISLREELEAVDLYNQRVNACKDKELKAILAHNRDEEKE 62 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3445555554 3446799999999999997444
No 83
>1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2 PDB: 1wq1_G*
Probab=27.76 E-value=57 Score=30.72 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=23.4
Q ss_pred hhHHHHHHHhc---CCCCCCCh-------HHH---HHHHHHHHHHhhhhcC
Q 013514 404 KRSIQELVNQI---DPSERLDP-------DVE---DILVDIAEDFVESVSS 441 (441)
Q Consensus 404 KrKLqELVrQV---DP~e~LDp-------DVE---ElLLdLADDFVdSVvS 441 (441)
|.-|.++|++| +....+|+ |++ +.|.+++|+|++.+++
T Consensus 98 ~~~L~~~i~~i~~~~~~~EiDP~ki~~~~~~~~n~~~L~~~~~~~~~~I~~ 148 (334)
T 1wer_A 98 HHALKDSILKIMESKQSCELSPSKLEKNEDVNTNLTHLLNILSELVEKIFM 148 (334)
T ss_dssp HHHHHHHHHHHHHCCCCCCCCGGGTCSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCeeeCHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666655 12333333 454 5789999999998763
No 84
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=27.39 E-value=50 Score=26.76 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=24.4
Q ss_pred HHHHHHhcCC-CCCCChHHHHHHHHHH-------HHHhhhhc
Q 013514 407 IQELVNQIDP-SERLDPDVEDILVDIA-------EDFVESVS 440 (441)
Q Consensus 407 LqELVrQVDP-~e~LDpDVEElLLdLA-------DDFVdSVv 440 (441)
+++|..++|. +...+++|-|-|++|+ ||||+..+
T Consensus 5 ~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~~~e~V~ew~ 46 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELI 46 (78)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5677777752 3345568989898885 89998765
No 85
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=26.42 E-value=65 Score=25.39 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=21.1
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++..|++..|.++++ ...++++.-+.|++.+|
T Consensus 133 D~d~~G~I~~~E~~~~l~----~~~~~~~~~~~~~~~~D 167 (191)
T 3khe_A 133 DSDGSGKITNEELGRLFG----VTEVDDETWHQVLQECD 167 (191)
T ss_dssp CTTCSSEECHHHHHHHTT----SSCCCHHHHHHHHHHHC
T ss_pred CCCCcCcCCHHHHHHHHc----cCCCCHHHHHHHHHHhC
Confidence 345666778777777766 44555555444555554
No 86
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=26.35 E-value=94 Score=25.14 Aligned_cols=35 Identities=17% Similarity=0.487 Sum_probs=21.8
Q ss_pred CCCc-ccchhHHHHHHHh-cCC--CCCC-ChHHHHHHHHH
Q 013514 397 FGNR-ILTKRSIQELVNQ-IDP--SERL-DPDVEDILVDI 431 (441)
Q Consensus 397 ~gnr-VLtKrKLqELVrQ-VDP--~e~L-DpDVEElLLdL 431 (441)
+++- .|++..|.++++. +.. .+.+ +.+|+++|-++
T Consensus 35 dgdGG~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~ 74 (113)
T 2lnk_A 35 EGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNL 74 (113)
T ss_dssp TSCTTCBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHH
T ss_pred CCCCCEECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHh
Confidence 4444 8899999999985 221 1223 45677766554
No 87
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=26.22 E-value=89 Score=23.29 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=24.3
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++..|++..|..+++.+. ..++++.-+.|++.+|
T Consensus 42 D~d~~G~I~~~el~~~l~~~g--~~~~~~~~~~l~~~~D 78 (107)
T 2d58_A 42 DLNGNGDIDIMSLKRMLEKLG--VPKTHLELKKLIGEVS 78 (107)
T ss_dssp CCCTTSCEEHHHHHHHHHHTT--CCCCHHHHHHHHHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHhC
Confidence 456777899999999999884 3455444444444443
No 88
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=26.15 E-value=1.1e+02 Score=24.03 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=28.9
Q ss_pred CCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhh
Q 013514 398 GNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESV 439 (441)
Q Consensus 398 gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSV 439 (441)
++.+|.+.-+..+.+.+.- +.|.+|+-+.|.+-++..+..|
T Consensus 3 ~~s~lp~~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI 43 (70)
T 1taf_B 3 YGSSISAESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRI 43 (70)
T ss_dssp CSCCCCHHHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999876 4677776666666665555444
No 89
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=26.01 E-value=50 Score=22.99 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=23.1
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+.- ..++++..+.|+..+|
T Consensus 18 D~d~~G~i~~~el~~~l~~~g~-~~~~~~~~~~~~~~~D 55 (81)
T 1c7v_A 18 DANGDGVIDFDEFKFIMQKVGE-EPLTDAEVEEAMKEAD 55 (81)
T ss_dssp SCSGGGEECHHHHHHHSSTTTT-CCCCHHHHHHHHHHHC
T ss_pred CCCCCCcCCHHHHHHHHHHhCC-CCCCHHHHHHHHHHhC
Confidence 3456667888888888887741 3444444444455544
No 90
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=25.81 E-value=62 Score=23.65 Aligned_cols=39 Identities=8% Similarity=0.189 Sum_probs=23.5
Q ss_pred CCCCCcccchhHHHHHHHhcCC-CCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDP-SERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP-~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|+++.|..+++.+.. ...++++.-+.|++.+|
T Consensus 52 D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~d 91 (110)
T 1pva_A 52 DADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAAD 91 (110)
T ss_dssp CTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhC
Confidence 4466677888888888888742 33454444344444443
No 91
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=25.77 E-value=88 Score=23.75 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=23.4
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. +.++..+.|++.+|
T Consensus 108 D~d~~G~i~~~E~~~~l~~~~----~~~~~~~~~~~~~D 142 (166)
T 3akb_A 108 DTDGDGAVTVADTARALTAFG----VPEDLARQAAAALD 142 (166)
T ss_dssp CSSSSSCCBHHHHHHHHHHTT----CCHHHHHHHHHHHC
T ss_pred CCCCCCcCCHHHHHHHHHHhC----CCHHHHHHHHHHhC
Confidence 456677888888888888875 55554444555544
No 92
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=25.61 E-value=42 Score=25.64 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=23.2
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..++++.-+.|++.+|
T Consensus 105 D~d~~G~i~~~El~~~l~~~g--~~~~~~~~~~~~~~~D 141 (161)
T 1dtl_A 105 DKNADGYIDLEELKIMLQATG--ETITEDDIEELMKDGD 141 (161)
T ss_dssp CTTCSSEEEHHHHGGGGTTC----CCCHHHHHHHHHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHhC
Confidence 345666788888877777664 4466655555666655
No 93
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=25.55 E-value=1.2e+02 Score=24.84 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=23.0
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPD 423 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpD 423 (441)
+.+++-.|++..|.++++...-...|.++
T Consensus 132 D~d~~G~Is~~El~~~l~~~~~~~~l~~~ 160 (191)
T 3k21_A 132 DVDNDGEITTAELAHILYNGNKKGNITQR 160 (191)
T ss_dssp STTCSSCBCHHHHHHHHHHSSSCSCCCHH
T ss_pred CCCCCCcCCHHHHHHHHHhcCCCCCCCHh
Confidence 45677789999999999987777777763
No 94
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens}
Probab=25.35 E-value=1.1e+02 Score=24.14 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=22.2
Q ss_pred CCC-cccchhHHHHHHHh-cCC--CCCCChHHHHHHHHHHH
Q 013514 397 FGN-RILTKRSIQELVNQ-IDP--SERLDPDVEDILVDIAE 433 (441)
Q Consensus 397 ~gn-rVLtKrKLqELVrQ-VDP--~e~LDpDVEElLLdLAD 433 (441)
+++ -.|++..|.++++. +.. .+.++++..+-|++.+|
T Consensus 26 dgd~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D 66 (104)
T 3zwh_A 26 EGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLD 66 (104)
T ss_dssp SSSTTSBCHHHHHHHHHHHCGGGSCSSCCHHHHHHHHHHHC
T ss_pred CCCCCeECHHHHHHHHHHHcchhccCCCCHHHHHHHHHHHc
Confidence 443 58999999999985 542 23445544444444454
No 95
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=25.29 E-value=90 Score=23.16 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=24.0
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++..|++..|..+++.+. ..++++.-+.|++.+|
T Consensus 94 D~d~~G~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d 130 (147)
T 4ds7_A 94 DKNGDGLISAAELKHVLTSIG--EKLTDAEVDEMLREVS 130 (147)
T ss_dssp CTTCSSEECHHHHHHHHHHTT--CCCCHHHHHHHHHHHS
T ss_pred CCCCCCeECHHHHHHHHHHcC--CCCCHHHHHHHHHHhc
Confidence 456677899999999999875 3455444444444443
No 96
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio}
Probab=24.80 E-value=1e+02 Score=23.66 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=20.8
Q ss_pred CCCc-ccchhHHHHHHHhcCC---CCCCCh-HHHHHHHHHHH
Q 013514 397 FGNR-ILTKRSIQELVNQIDP---SERLDP-DVEDILVDIAE 433 (441)
Q Consensus 397 ~gnr-VLtKrKLqELVrQVDP---~e~LDp-DVEElLLdLAD 433 (441)
+++- .|++..|.++++..-+ ...+++ +|+++| +.+|
T Consensus 23 dg~gG~I~~~El~~~l~~~~~~~lg~~~~~~~v~~l~-~~~D 63 (99)
T 2y5i_A 23 EGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIM-NDLD 63 (99)
T ss_dssp SSSTTEECHHHHHHHHHHHSGGGGTTSCCHHHHHHHH-HHHC
T ss_pred CCCcCcCCHHHHHHHHHHHhhhhccccccHHHHHHHH-HHHC
Confidence 4443 7899999999986221 133444 455544 4443
No 97
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.72 E-value=39 Score=28.58 Aligned_cols=34 Identities=9% Similarity=0.285 Sum_probs=24.0
Q ss_pred chhHHHHHHHhcC------CCCCCChHHHHHHHHHHHHHh
Q 013514 403 TKRSIQELVNQID------PSERLDPDVEDILVDIAEDFV 436 (441)
Q Consensus 403 tKrKLqELVrQVD------P~e~LDpDVEElLLdLADDFV 436 (441)
.|++++|.-|-|+ -++.|.++|.+-|++||..+-
T Consensus 34 ~k~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~ 73 (118)
T 2yru_A 34 KKQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELL 73 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 5666666666553 334589999999999987553
No 98
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=24.49 E-value=1.2e+02 Score=21.62 Aligned_cols=17 Identities=24% Similarity=0.600 Sum_probs=13.1
Q ss_pred CCCc-ccchhHHHHHHHh
Q 013514 397 FGNR-ILTKRSIQELVNQ 413 (441)
Q Consensus 397 ~gnr-VLtKrKLqELVrQ 413 (441)
+++- .|++..|..+++.
T Consensus 22 d~~G~~I~~~el~~~l~~ 39 (93)
T 1k2h_A 22 EGDKYKLSKKELKDLLQT 39 (93)
T ss_dssp SSCCSSCCHHHHHHHHHH
T ss_pred CCCcCccCHHHHHHHHHH
Confidence 4455 7888888888886
No 99
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=24.39 E-value=29 Score=28.81 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=22.5
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++..|++..|.++++.+.....++++..+.|++.+|
T Consensus 139 D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~D 177 (197)
T 3pm8_A 139 DIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVD 177 (197)
T ss_dssp CTTCSSEECHHHHHHHHC----CCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHc
Confidence 456777889888888888774444455544444444443
No 100
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=24.26 E-value=29 Score=30.12 Aligned_cols=35 Identities=23% Similarity=0.511 Sum_probs=24.2
Q ss_pred ccchhHHHH-HHHhcCCCCCCChHHHHHHHHHHHHH
Q 013514 401 ILTKRSIQE-LVNQIDPSERLDPDVEDILVDIAEDF 435 (441)
Q Consensus 401 VLtKrKLqE-LVrQVDP~e~LDpDVEElLLdLADDF 435 (441)
|-+|+-|+| |++-|.+...++.+|.+-+|+|..+.
T Consensus 93 iask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~W 128 (152)
T 3rru_A 93 IVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTW 128 (152)
T ss_dssp HSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHH
T ss_pred HHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH
Confidence 335666777 78877776667778887777765554
No 101
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=24.20 E-value=1.2e+02 Score=24.62 Aligned_cols=34 Identities=9% Similarity=0.196 Sum_probs=23.2
Q ss_pred CCCCCcccchhHHHHHHHhc-CCCCCCCh-HHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQI-DPSERLDP-DVEDILVD 430 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQV-DP~e~LDp-DVEElLLd 430 (441)
+.+++-.|++..|..+++.+ . ..+++ +|++++-.
T Consensus 124 D~d~dG~Is~~El~~~l~~~~g--~~~~~~~~~~~~~~ 159 (202)
T 2bec_A 124 DLDRDGKISRHEMLQVLRLMVG--VQVTEEQLENIADR 159 (202)
T ss_dssp CTTCSSEECHHHHHHHHHHSCC--SCCCHHHHHHHHHH
T ss_pred CCCCCCeEcHHHHHHHHHHhcC--CCCCHHHHHHHHHH
Confidence 45777789999999999988 4 33544 45554433
No 102
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=24.07 E-value=84 Score=23.58 Aligned_cols=35 Identities=9% Similarity=0.157 Sum_probs=22.8
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|.++++.+. ++++.-+-|++.+|
T Consensus 20 D~d~dG~I~~~el~~~l~~~g----~~~~~~~~i~~~~D 54 (95)
T 1c07_A 20 DKDMDGFVSGLEVREIFLKTG----LPSTLLAHIWSLCD 54 (95)
T ss_dssp CTTCSSEECHHHHHHHHHTTT----CCHHHHHHHHHHHC
T ss_pred CCCCCCcEeHHHHHHHHHHcC----CCHHHHHHHHHHHC
Confidence 446677889999999998874 44433333455555
No 103
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=24.05 E-value=1e+02 Score=24.18 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=18.2
Q ss_pred CCCCCChHHHHHHHHHHHHHhhhh
Q 013514 416 PSERLDPDVEDILVDIAEDFVESV 439 (441)
Q Consensus 416 P~e~LDpDVEElLLdLADDFVdSV 439 (441)
....++.+--+-+|+.|.+||+-|
T Consensus 95 ~~~~~~~~~a~~al~~A~~~i~~v 118 (126)
T 2hsb_A 95 IYKEVSKDLAIKILKDAEIFVQKA 118 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHH
Confidence 335577766666899999999876
No 104
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=23.86 E-value=57 Score=27.37 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=28.5
Q ss_pred hhHHHHHHHhc-CCCCCCChHHHH-----HHHHHHHHHhhhh
Q 013514 404 KRSIQELVNQI-DPSERLDPDVED-----ILVDIAEDFVESV 439 (441)
Q Consensus 404 KrKLqELVrQV-DP~e~LDpDVEE-----lLLdLADDFVdSV 439 (441)
-.+|.++|+++ +....||+.++. -|+..|.++++.+
T Consensus 36 l~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~A 77 (100)
T 1vp7_A 36 LAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQA 77 (100)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999 577788888873 4888888887764
No 105
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=23.80 E-value=81 Score=24.23 Aligned_cols=35 Identities=9% Similarity=0.064 Sum_probs=21.9
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|.++++.+. |+++.-+-|+++||
T Consensus 21 D~d~dG~Is~~el~~~l~~~~----l~~~~l~~i~~~~D 55 (99)
T 1qjt_A 21 EAGNTGRVLALDAAAFLKKSG----LPDLILGKIWDLAD 55 (99)
T ss_dssp CCTTSSCCCSHHHHHHHHTSS----SCHHHHHHHHHHHC
T ss_pred CCCCCCcCCHHHHHHHHHHcC----CCHHHHHHHHHHHC
Confidence 345666788888888888763 44444444555555
No 106
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=23.75 E-value=74 Score=25.91 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=23.1
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVD 430 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLd 430 (441)
+.+++-.|++..|..+++.+. .-+++|++++-.
T Consensus 138 D~d~~G~Is~~El~~~l~~~g---~~~~~~~~~~~~ 170 (208)
T 2hpk_A 138 DDDGDGTVDVDELKTMMKAFD---VPQEAAYTFFEK 170 (208)
T ss_dssp CTTCSSSBCHHHHHHHHHHTT---SCTTHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHhC---cCHHHHHHHHHH
Confidence 457778899999999998886 334455555443
No 107
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=23.74 E-value=70 Score=23.37 Aligned_cols=39 Identities=8% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCCCCcccchhHHHHHHHhcCC-CCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDP-SERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP-~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|+++.|..+++.+.. ...++++..+.|+..+|
T Consensus 51 D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D 90 (108)
T 2pvb_A 51 DQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGD 90 (108)
T ss_dssp CTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHHC
T ss_pred CCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHhC
Confidence 3466677888888888887742 23344443344444443
No 108
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=23.65 E-value=34 Score=28.80 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=21.9
Q ss_pred CCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 416 PSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 416 P~e~LDpDVEElLLdLADDFVdSVv 440 (441)
-++.+.++|...|.+++.+|++.|.
T Consensus 36 ~~~~vs~~~i~aL~E~~~~~~~~ia 60 (107)
T 3b0b_B 36 KGVLFSKQTVAAISEITFRQCENFA 60 (107)
T ss_dssp HTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999998764
No 109
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=23.48 E-value=63 Score=30.41 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=28.7
Q ss_pred CCCCcccchhHHHHHHHhc-------C-----CCCCCChHHHHHHHHH-------HHHHhhhh
Q 013514 396 EFGNRILTKRSIQELVNQI-------D-----PSERLDPDVEDILVDI-------AEDFVESV 439 (441)
Q Consensus 396 ~~gnrVLtKrKLqELVrQV-------D-----P~e~LDpDVEElLLdL-------ADDFVdSV 439 (441)
++++-.++|++|.+||+.| . +...+++-|+.++-.+ .|||++-+
T Consensus 178 DD~~G~I~~~El~~il~~i~~i~~~vge~~~~~~~~~e~~v~~~F~~~d~dg~It~~EFl~~~ 240 (261)
T 1eg3_A 178 ASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWM 240 (261)
T ss_dssp SCTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHH
T ss_pred eCCCCCCcHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHhCCCCCcCCHHHHHHHH
Confidence 3677889999999999874 1 2234555666665444 25677643
No 110
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=23.47 E-value=26 Score=28.20 Aligned_cols=43 Identities=12% Similarity=0.319 Sum_probs=27.1
Q ss_pred cccCCCCCccc----chhHHHHHHHhcCCC-----CCCChHHHHHHHHHHHH
Q 013514 392 TESDEFGNRIL----TKRSIQELVNQIDPS-----ERLDPDVEDILVDIAED 434 (441)
Q Consensus 392 ~~~~~~gnrVL----tKrKLqELVrQVDP~-----e~LDpDVEElLLdLADD 434 (441)
+...+.+..|+ ++|.+.|||..+... +.+..||.++|-+|.+.
T Consensus 39 i~Ln~~a~~Iw~l~DG~rtv~eIv~~L~~~y~~~~e~i~~DV~~FL~~L~~~ 90 (95)
T 3g2b_A 39 VELDDIALVVAQRYDGTQSLAQIAQTLAAEFDADASEIETDVIELTTTLHQK 90 (95)
T ss_dssp CCCCTHHHHHHHHCCSSSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred eecCHHHHHHHHHccCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHC
Confidence 44455555555 377888888777433 34556777777777654
No 111
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=23.43 E-value=38 Score=23.00 Aligned_cols=37 Identities=11% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCCCC-cccchhHHHHHHHhcCCCCC-CChHHHHHHHHH
Q 013514 395 DEFGN-RILTKRSIQELVNQIDPSER-LDPDVEDILVDI 431 (441)
Q Consensus 395 ~~~gn-rVLtKrKLqELVrQVDP~e~-LDpDVEElLLdL 431 (441)
+.+++ -.|++..|..+++.+..... -+.+|++++-.+
T Consensus 16 D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~l~~~~ 54 (76)
T 1qx2_A 16 AKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEV 54 (76)
T ss_dssp TSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHH
T ss_pred ccCCCcCeECHHHHHHHHHHhCCCcCCCHHHHHHHHHHh
Confidence 34556 67899999999998842210 244566655443
No 112
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=22.98 E-value=86 Score=23.31 Aligned_cols=35 Identities=9% Similarity=0.182 Sum_probs=23.2
Q ss_pred cCCCCCcccchhHHHHHHHhcCCCCCCC-hHHHHHHHHHHH
Q 013514 394 SDEFGNRILTKRSIQELVNQIDPSERLD-PDVEDILVDIAE 433 (441)
Q Consensus 394 ~~~~gnrVLtKrKLqELVrQVDP~e~LD-pDVEElLLdLAD 433 (441)
.+.+++-.|++..|.++++.+. ++ .++++ |++.+|
T Consensus 18 ~D~d~dG~I~~~el~~~l~~~g----~~~~~~~~-i~~~~D 53 (92)
T 1fi6_A 18 IQPDLNGFIPGSAAKEFFTKSK----LPILELSH-IWELSD 53 (92)
T ss_dssp TCCSTTCEEEHHHHHHHHHHHS----SCHHHHHH-HHHHHC
T ss_pred HCCCCCCcCcHHHHHHHHHHcC----CCHHHHHH-HHHHHC
Confidence 3456677889999999998874 33 44555 445554
No 113
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=22.94 E-value=92 Score=24.95 Aligned_cols=46 Identities=11% Similarity=0.258 Sum_probs=33.5
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
.+..+..|--.++.-+++.-....++..|+-.+|-..++.||..++
T Consensus 13 ~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~ 58 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELT 58 (97)
T ss_dssp -------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHH
Confidence 4456677888899999996544478999999999999999998875
No 114
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=22.77 E-value=75 Score=24.95 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=24.8
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+. ..++++..+.|++.+|
T Consensus 119 D~d~~G~Is~~El~~~l~~~g--~~~~~~~~~~~~~~~D 155 (191)
T 1uhk_A 119 DKDQNGAITLDEWKAYTKAAG--IIQSSEDCEETFRVCD 155 (191)
T ss_dssp CTTCSSEECHHHHHHHHHHHT--SCCSHHHHHHHHHHSC
T ss_pred cCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHhC
Confidence 456777889999998888874 4455554445555544
No 115
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=22.72 E-value=41 Score=28.64 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=21.7
Q ss_pred HHHHHHhcCC-CCCCChHHHHHHHHH-------HHHHhhhh
Q 013514 407 IQELVNQIDP-SERLDPDVEDILVDI-------AEDFVESV 439 (441)
Q Consensus 407 LqELVrQVDP-~e~LDpDVEElLLdL-------ADDFVdSV 439 (441)
.++|++++|- +...|+||.|-|+|| |+|||+..
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeW 68 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGEL 68 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4555555542 334677888888887 68888753
No 116
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=22.62 E-value=85 Score=26.63 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=25.0
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++..|++..|.++++.+. ..++++.-+.|++.+|
T Consensus 127 D~d~~G~I~~~El~~~l~~~g--~~~~~~~~~~l~~~~d 163 (220)
T 3sjs_A 127 ARARSGTLEPHEILPALQQLG--FYINQRTSLLLHRLFA 163 (220)
T ss_dssp CCSSTTEECHHHHHHHHHHHT--CCCCHHHHHHHHHHHC
T ss_pred CCCCCCCCcHHHHHHHHHHhC--CCCCHHHHHHHHHHhc
Confidence 446777888888998888875 3566655455555554
No 117
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=22.54 E-value=1.2e+02 Score=23.03 Aligned_cols=37 Identities=11% Similarity=0.218 Sum_probs=24.0
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|.++++.+. ..++++.-+.|++.+|
T Consensus 106 D~d~~G~I~~~e~~~~l~~~g--~~~~~~~~~~~~~~~d 142 (162)
T 1top_A 106 DKNADGFIDIEELGEILRATG--EHVTEEDIEDLMKDSD 142 (162)
T ss_dssp CTTCSSCBCHHHHHHHHHTTT--CCCCHHHHHHHHHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHHHhC
Confidence 346667788888988888774 4455544444555543
No 118
>3jvo_A GP6; 13-membered ring, viral protein; HET: MSE; 2.10A {Enterobacteria phage HK97}
Probab=22.30 E-value=84 Score=25.77 Aligned_cols=38 Identities=5% Similarity=0.146 Sum_probs=27.4
Q ss_pred cccchhHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 400 RILTKRSIQELVNQIDPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 400 rVLtKrKLqELVrQVDP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
.+++-..+..-+| ||.. -|++..+.|++-|.++|++.+
T Consensus 7 ~~vtLee~K~~LR-id~d--~dD~li~~li~AA~~~~~~~~ 44 (108)
T 3jvo_A 7 DVISLSLFKQQIE-FEED--DRDELITLYAQAAFDYCMRWC 44 (108)
T ss_dssp GTSCHHHHHHHTT-CCCS--TTHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHcc-CCCC--ccHHHHHHHHHHHHHHHHHHh
Confidence 4566455555555 6766 588888999999999998764
No 119
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A*
Probab=22.25 E-value=90 Score=24.29 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=14.4
Q ss_pred CCCc-ccchhHHHHHHH-hcC
Q 013514 397 FGNR-ILTKRSIQELVN-QID 415 (441)
Q Consensus 397 ~gnr-VLtKrKLqELVr-QVD 415 (441)
+++- .|++..|.++++ .+.
T Consensus 25 dgdG~~Is~~El~~~l~~~lg 45 (113)
T 1xk4_C 25 LGHPDTLNQGEFKELVRKDLQ 45 (113)
T ss_dssp SSSTTSBCHHHHHHHHHHHTT
T ss_pred CCCCCEECHHHHHHHHHHHhh
Confidence 4555 888999999988 664
No 120
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=22.11 E-value=34 Score=28.12 Aligned_cols=35 Identities=9% Similarity=0.427 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCC--CCChHHHHHHHHHHHHHhhhhc
Q 013514 406 SIQELVNQIDPSE--RLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 406 KLqELVrQVDP~e--~LDpDVEElLLdLADDFVdSVv 440 (441)
.+++||.+|-|.. .+-++|.+=||.--.+|++.++
T Consensus 57 t~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~~v 93 (96)
T 3mhs_B 57 NFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIV 93 (96)
T ss_dssp CHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHE
T ss_pred CHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 3778888886654 7888898777777788999886
No 121
>3gcg_B MAP, L0028 (mitochondria associated protein); CDC42, complex, alternative splicing, cell membrane, GTP-binding, lipoprotein, membrane; 2.30A {Escherichia coli}
Probab=21.80 E-value=96 Score=28.48 Aligned_cols=32 Identities=16% Similarity=0.400 Sum_probs=22.3
Q ss_pred hhHHHHHHHhcCCCCCCChHHH-----HHHHHHHHHHhhhhc
Q 013514 404 KRSIQELVNQIDPSERLDPDVE-----DILVDIAEDFVESVS 440 (441)
Q Consensus 404 KrKLqELVrQVDP~e~LDpDVE-----ElLLdLADDFVdSVv 440 (441)
.+|+++|+. +.+|.+|. -++=.|||+|.|..+
T Consensus 111 ~kK~d~Lc~-----~g~d~~vrn~t~~~i~n~iaD~~fEk~~ 147 (172)
T 3gcg_B 111 NQKVDEQCG-----KRVDPITRFNTQTKMIEQVSQEIFERNF 147 (172)
T ss_dssp HHHHHHHHT-----TCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467788864 23467775 456679999998765
No 122
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=21.70 E-value=1e+02 Score=24.04 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=13.3
Q ss_pred CCCCCcccchhHHHHHHHhcC
Q 013514 395 DEFGNRILTKRSIQELVNQID 415 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVD 415 (441)
+.+++..|+++.|..+++.+.
T Consensus 50 D~d~~G~I~~~el~~~l~~~g 70 (135)
T 3h4s_E 50 ADPERHLITAESLRRNSGILG 70 (135)
T ss_dssp SBTTTTBBCHHHHHHHGGGGT
T ss_pred CCCCCCcCCHHHHHHHHHHhC
Confidence 345556677777777776664
No 123
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=21.68 E-value=51 Score=27.44 Aligned_cols=40 Identities=13% Similarity=0.329 Sum_probs=32.5
Q ss_pred ccchhHHHHHHHhc--CCCCCCChHHHHHHHHHHHHHhhhhc
Q 013514 401 ILTKRSIQELVNQI--DPSERLDPDVEDILVDIAEDFVESVS 440 (441)
Q Consensus 401 VLtKrKLqELVrQV--DP~e~LDpDVEElLLdLADDFVdSVv 440 (441)
+|.|.-|..|+... +.+.+|..|+-+++-++-|=||...+
T Consensus 1 ~ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv 42 (88)
T 3v9r_B 1 MLSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAV 42 (88)
T ss_dssp CCCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHH
Confidence 35666677777744 78999999999999999999998654
No 124
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=21.58 E-value=1.5e+02 Score=23.65 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=23.6
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIA 432 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLA 432 (441)
+.+++-.|++..|.++++.+.-. ++++..+.|++..
T Consensus 47 D~d~~G~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~ 82 (204)
T 3e3r_A 47 DRDGSRSLDADEFRQGLAKLGLV--LDQAEAEGVCRKW 82 (204)
T ss_dssp CTTCCSSBCHHHHHHHHHTTTCC--CCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHHHHHHHcCCC--CCHHHHHHHHHHh
Confidence 45677789999999999988433 4444444444444
No 125
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A
Probab=21.54 E-value=1e+02 Score=22.93 Aligned_cols=35 Identities=17% Similarity=0.413 Sum_probs=22.2
Q ss_pred CCCc-ccchhHHHHHHHhcCCC-CCCChHHHHHHHHH
Q 013514 397 FGNR-ILTKRSIQELVNQIDPS-ERLDPDVEDILVDI 431 (441)
Q Consensus 397 ~gnr-VLtKrKLqELVrQVDP~-e~LDpDVEElLLdL 431 (441)
+++. .|++..|.++++...+. ..-+.+|++++-++
T Consensus 23 d~dG~~I~~~El~~~l~~~~~~~~~~~~~i~~~~~~~ 59 (92)
T 2kax_A 23 EGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSL 59 (92)
T ss_dssp SSCSSEEEHHHHHHHHHHHSCCTTTCCTTHHHHHHHH
T ss_pred CCCCCeeCHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 4455 88999999999874331 13345666665444
No 126
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=21.51 E-value=90 Score=24.60 Aligned_cols=37 Identities=5% Similarity=0.049 Sum_probs=22.3
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++..|++..|.++++.+. ..+.++..+.|++.+|
T Consensus 87 D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~~~d 123 (173)
T 1alv_A 87 DVDRSGTIGSSELPGAFEAAG--FHLNEHLYSMIIRRYS 123 (173)
T ss_dssp CTTCCSSBCTTTHHHHHHHHT--CCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHcC--CCCCHHHHHHHHHHhc
Confidence 345666788888888888773 3455444444444443
No 127
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=21.31 E-value=1.1e+02 Score=31.31 Aligned_cols=35 Identities=20% Similarity=0.495 Sum_probs=25.0
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCCh-HHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDP-DVEDILVDIA 432 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDp-DVEElLLdLA 432 (441)
+.+++-.|++..|.++++.+. +.|++ ||++| ++.+
T Consensus 385 DkDgdG~IS~eELr~vL~~lG--e~LSdeEIdeL-fke~ 420 (440)
T 3u0k_A 385 DKDGNGYISAAELRHVMTNLG--EKLTDEEVDEM-IREA 420 (440)
T ss_dssp CTTCSSEECHHHHHHHHHHHT--CCCCHHHHHHH-HHHH
T ss_pred CCCCcCcCCHHHHHHHHHHhC--CCCCHHHHHHH-HHHh
Confidence 557778899999999999986 34554 45555 4444
No 128
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=21.08 E-value=1.4e+02 Score=24.16 Aligned_cols=44 Identities=14% Similarity=0.275 Sum_probs=0.0
Q ss_pred cCCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHH--------HHHhhhh
Q 013514 394 SDEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIA--------EDFVESV 439 (441)
Q Consensus 394 ~~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLA--------DDFVdSV 439 (441)
.+.+++-.|+++.|.++++.+ ...++++..+.|++.+ +||+.-+
T Consensus 112 ~D~d~~G~I~~~el~~~l~~~--g~~~~~~~~~~l~~~~d~dg~i~~~eF~~~~ 163 (198)
T 1juo_A 112 FDTDRSGTVDPQELQKALTTM--GFRLSPQAVNSIAKRYSTNGKITFDDYIACC 163 (198)
T ss_dssp TCTTCCSEECHHHHHHHHHHT--TCCCCHHHHHHHHHHTCSSSSEEHHHHHHHH
T ss_pred hCCCCCCcCCHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCeEcHHHHHHHH
No 129
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=21.05 E-value=1.1e+02 Score=24.03 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=14.1
Q ss_pred CCCCCcccchhHHHHHHHhc
Q 013514 395 DEFGNRILTKRSIQELVNQI 414 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQV 414 (441)
+.+++-.|++..|..+++.+
T Consensus 102 D~d~~G~i~~~e~~~~~~~~ 121 (183)
T 1s6c_A 102 DINKDGYINKEEMMDIVKAI 121 (183)
T ss_dssp CTTCSSCEEHHHHHHHHHHH
T ss_pred CCCCCCeEcHHHHHHHHHHH
Confidence 34566678888888777765
No 130
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=20.64 E-value=94 Score=24.19 Aligned_cols=36 Identities=8% Similarity=0.369 Sum_probs=24.6
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCC-hHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLD-PDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LD-pDVEElLLdLAD 433 (441)
+.+++-.|++..|..+++.+.. .+. .+|+++ ++.+|
T Consensus 93 D~d~~G~I~~~El~~~l~~~g~--~~~~~e~~~l-~~~~D 129 (148)
T 2lmt_A 93 DRDGDGFISPAELRFVMINLGE--KVTDEEIDEM-IREAD 129 (148)
T ss_dssp HSSCSSEECHHHHHHHHHHHTC--CCCHHHHHHH-HHHHC
T ss_pred CCCCcCcCcHHHHHHHHHHcCc--cccHHHHHHH-HHHhC
Confidence 4577788999999999998864 344 445554 44444
No 131
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=20.60 E-value=86 Score=24.07 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=24.0
Q ss_pred cCCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHH
Q 013514 394 SDEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVD 430 (441)
Q Consensus 394 ~~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLd 430 (441)
.+.+++-.|++..|..+++.+. ..++++..+.|++
T Consensus 94 ~D~d~~G~I~~~El~~~l~~~g--~~~~~~~~~~~~~ 128 (159)
T 2ovk_C 94 FDREGQGLISSAEIRNVLKMLG--ERITEDQCNDIFT 128 (159)
T ss_dssp TCTTSSSEECHHHHHHHHHHSS--SCCCHHHHHHHHH
T ss_pred HCCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHH
Confidence 3457778899999999999885 3455544444444
No 132
>3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha, calmodulin-binding, cell membrane, membrane, phosphoprotein, membrane protein; 2.20A {Homo sapiens}
Probab=20.48 E-value=64 Score=31.23 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhhhcC
Q 013514 426 DILVDIAEDFVESVSS 441 (441)
Q Consensus 426 ElLLdLADDFVdSVvS 441 (441)
+.|.+++|+|++.+++
T Consensus 178 ~~L~~~~~~~~~~I~~ 193 (387)
T 3fay_A 178 RNMRAVTDKFLSAIVS 193 (387)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4689999999998763
No 133
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=20.44 E-value=37 Score=28.48 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=17.1
Q ss_pred CCCCChHHHHHHHHHHHHHhh
Q 013514 417 SERLDPDVEDILVDIAEDFVE 437 (441)
Q Consensus 417 ~e~LDpDVEElLLdLADDFVd 437 (441)
...=|++|.++|++||||=++
T Consensus 42 ~~~~d~~~k~vl~~i~~EEke 62 (95)
T 3k6c_A 42 NACKDKELKAILAHNRDEEKE 62 (95)
T ss_dssp HHCCCHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHH
Confidence 346789999999999998544
No 134
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A
Probab=20.28 E-value=1.1e+02 Score=24.06 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=25.8
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++..|++..|..+++.+. ..+.++..+.|++.+|
T Consensus 112 D~d~~G~I~~~E~~~~l~~~g--~~~~~~~~~~~~~~~D 148 (186)
T 2hps_A 112 DTDKDGYVSLPEFKAFLQAVG--PDLTDDKAITCFNTLD 148 (186)
T ss_dssp CTTCSSEEEHHHHHHHHHHHC--TTCCHHHHHHHHHHHC
T ss_pred cCCCCCcCCHHHHHHHHHHhC--CCCCHHHHHHHHHHHc
Confidence 556777889999999998884 4466655555555554
No 135
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=20.17 E-value=72 Score=26.17 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=22.8
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 013514 395 DEFGNRILTKRSIQELVNQIDPSERLDPDVEDILVDIAE 433 (441)
Q Consensus 395 ~~~gnrVLtKrKLqELVrQVDP~e~LDpDVEElLLdLAD 433 (441)
+.+++-.|++..|.++++.+. .-+++|++++ +.+|
T Consensus 92 D~d~dG~Is~~El~~~l~~~g---~~~~~~~~~~-~~~D 126 (188)
T 1s6i_A 92 DKDGSGYITLDEIQQACKDFG---LDDIHIDDMI-KEID 126 (188)
T ss_dssp TTTCSSEEEHHHHHHTTTTTT---CCTTHHHHHH-HHHC
T ss_pred CCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHH-HHHC
Confidence 456777899998888888764 2244555554 4443
Done!