BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013515
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/248 (41%), Positives = 137/248 (55%), Gaps = 27/248 (10%)
Query: 169 PRYVRVNTLKMDVDSAVLELGKQ-FVVQKXXXXXXXXXXXXG------------------ 209
PR+VRVNTLK D V +Q F Q G
Sbjct: 11 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 70
Query: 210 CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKI 269
DLH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K +GKI
Sbjct: 71 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 130
Query: 270 VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 329
A +L+ +R+ + + +G + E+ DFL + P DP Y EV ILLDPSCSGSG
Sbjct: 131 FAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMP 190
Query: 330 AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVEN 389
+ +L+ T P RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+ Q EN
Sbjct: 191 SRQLE-----EPGAGTPSPV---RLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEEN 242
Query: 390 EDVIKSVL 397
EDV++ L
Sbjct: 243 EDVVRDAL 250
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 124/252 (49%), Gaps = 16/252 (6%)
Query: 172 VRVNTLKMDVDSAVLELGKQFV-VQKXXXXXXXXXXXXGCDLHVHPLIVNGCVFLQGKAS 230
+RVNTLK +V+ + EL + V V + + G + +Q +AS
Sbjct: 189 IRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIVQEEAS 248
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290
++ + L PKPG V+D +APG KT HLA LMK KGKI A +++K R++RLKD +K G
Sbjct: 249 AVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG 308
Query: 291 AANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE 350
++ L D P+ +LLD C+ SGT + P D
Sbjct: 309 IKIVKPLVKDARKA-PEIIGEEVADKVLLDAPCTSSGTIGKN-----PELRWRLRED--- 359
Query: 351 MERLNKLSAFQKKALRHA--LSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGF-QL 407
++N++S Q++ L A L PG R++Y+TCSI + ENE I+ L + F L
Sbjct: 360 --KINEMSQLQRELLESAARLVKPG-GRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPL 416
Query: 408 ATPFPNGTAEAS 419
+P+ G E +
Sbjct: 417 KSPYDPGFLEGT 428
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 103/235 (43%), Gaps = 18/235 (7%)
Query: 167 PKPRYVRVNTLKMDVDSAVLELGKQFVVQKXXXXXXXXXXXXGCDLHVH--PLIVNGCVF 224
P PR RVNTLK+ V V L K+ K + P + G ++
Sbjct: 42 PLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSITSTPEFLTGLIY 101
Query: 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
+Q +S AL PKPG V D +APG KT +LA L + G I A ++++ R+R +
Sbjct: 102 IQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDVDENRLRETRL 161
Query: 285 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGH 344
+ G N+ + H L++ + E ILLD C+GSGT H P
Sbjct: 162 NLSRLGVLNVILFHSSSLHIGELN---VEFDKILLDAPCTGSGTI-----HKNPERKWNR 213
Query: 345 TADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 397
T D + Q + L L PG +VYSTCS+ ENE VI+ L
Sbjct: 214 TXDDIKF-----CQGLQXRLLEKGLEVLKPG-GILVYSTCSLEPEENEFVIQWAL 262
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 21/235 (8%)
Query: 168 KPRYVRVNTLKMDVDSAVLEL-GKQFVVQKXXXXXXXXXXXXGCDLHVHPLIVNGCVFLQ 226
K +++RVNTLK++ + L K V++K + P + G Q
Sbjct: 9 KMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQ 68
Query: 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 286
+S + L P+ +LD C+APG KT HLA LMK KG IVA E++K R + LK I
Sbjct: 69 SISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNI 128
Query: 287 KLSGAANIEVLHGD---FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASG 343
G N +++ D + + K+ + + ILLD CSG+ + +
Sbjct: 129 NRMGVLNTIIINADMRKYKDYLLKNEIFFD--KILLDAPCSGN----------IIKDKNR 176
Query: 344 HTADPTEMERLNKLSAFQKKALRHALSFPGVE-RVVYSTCSIHQVENEDVIKSVL 397
+ ++ E + S QK+ + + + +VYSTCS+ ENE+VIK +L
Sbjct: 177 NVSE----EDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYIL 227
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 90/184 (48%), Gaps = 14/184 (7%)
Query: 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 274
HP G ++Q ++ V L PKPG +VLD +APG KT HLAA M GKG ++A E+
Sbjct: 75 HPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEV 134
Query: 275 NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLD 334
+ +RVR L + ++ GA + V L Y +LLD CSG G R D
Sbjct: 135 DGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTY--FHRVLLDAPCSGEGMF--RKD 189
Query: 335 HLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERV-VYSTCSIHQVENEDVI 393
A+ H P+ +R+ ++ QK L A G V VYSTC+ ENE V+
Sbjct: 190 R----EAARHWG-PSAPKRMAEV---QKALLAQASRLLGPGGVLVYSTCTFAPEENEGVV 241
Query: 394 KSVL 397
L
Sbjct: 242 AHFL 245
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 90/184 (48%), Gaps = 14/184 (7%)
Query: 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 274
HP G ++Q ++ V L PKPG +VLD +APG KT HLAA M GKG ++A E+
Sbjct: 75 HPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEV 134
Query: 275 NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLD 334
+ +RVR L + ++ GA + V L Y +LLD CSG G R D
Sbjct: 135 DGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTY--FHRVLLDAPCSGEGMF--RKD 189
Query: 335 HLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERV-VYSTCSIHQVENEDVI 393
A+ H P+ +R+ ++ QK L A G V VYSTC+ ENE V+
Sbjct: 190 R----EAARHWG-PSAPKRMAEV---QKALLAQASRLLGPGGVLVYSTCTFAPEENEGVV 241
Query: 394 KSVL 397
L
Sbjct: 242 AHFL 245
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 88/184 (47%), Gaps = 14/184 (7%)
Query: 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 274
HP G ++Q ++ V L PKPG +VLD +APG KT HLAA GKG ++A E+
Sbjct: 75 HPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARXGGKGLLLANEV 134
Query: 275 NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLD 334
+ +RVR L + ++ GA + V L Y +LLD CSG G R D
Sbjct: 135 DGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTY--FHRVLLDAPCSGEGXF--RKD 189
Query: 335 HLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERV-VYSTCSIHQVENEDVI 393
A+ H P+ +R ++ QK L A G V VYSTC+ ENE V+
Sbjct: 190 R----EAARHWG-PSAPKRXAEV---QKALLAQASRLLGPGGVLVYSTCTFAPEENEGVV 241
Query: 394 KSVL 397
L
Sbjct: 242 AHFL 245
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 118/266 (44%), Gaps = 34/266 (12%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQF------VVQKXXXXXXXXXX 206
S +D +A Q P R +RVNTLK+ V + L+L + +
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 207 XXGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGNKTVHLAA 261
L ++G ++Q +S + AAL AP+ +V D +APG+KT ++A
Sbjct: 81 EDALPLGSTAEHLSGLFYIQEASSXLPVAALFADGNAPQ---RVXDVAAAPGSKTTQISA 137
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321
+G I+A E + RV+ L I G +N+ + H D P AILLD
Sbjct: 138 RXNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVP--EXFDAILLDA 195
Query: 322 SCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYS 380
CSG G + D L S S T+ E ++ SAF HAL G +VYS
Sbjct: 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPGGT--LVYS 245
Query: 381 TCSIHQVENEDV---IKSVLPIAMSF 403
TC+++Q ENE V +K P A+ F
Sbjct: 246 TCTLNQEENEAVCLWLKETYPDAVEF 271
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 31/189 (16%)
Query: 219 VNGCVFL--------QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 270
VNG FL Q ++ +V A A KPG KVLD C+APG K+ LAA KGKG +V
Sbjct: 75 VNGKSFLHQAGYEYSQEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKGKGLLV 134
Query: 271 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 330
E+ +R + L + I+ G +N V + L P + + I++D CSG G
Sbjct: 135 TNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFD--RIVVDAPCSGEGX-- 190
Query: 331 ERLDHLLPSHASGHTADPTEMERLNKLSAF-----QKKALRHAL-SFPGVERVVYSTCSI 384
DP ++ + S Q++ L A+ +++YSTC+
Sbjct: 191 -------------FRKDPNAIKEWTEESPLYCQKRQQEILSSAIKXLKNKGQLIYSTCTF 237
Query: 385 HQVENEDVI 393
ENE++I
Sbjct: 238 APEENEEII 246
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 14/187 (7%)
Query: 212 LHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVA 271
+H P +G V +Q ++ LAP+ G +LD C+APG KT H+ + + ++VA
Sbjct: 217 VHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVA 275
Query: 272 CELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 330
+++++R+ R+ D +K G A ++ G + + + + ILLD CS +G
Sbjct: 276 VDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDR---ILLDAPCSATGVIR 332
Query: 331 ERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 390
D ++ L +L + A+ L G +VY+TCS+ EN
Sbjct: 333 RHPD-------IKWLRRDRDIPELAQLQSEILDAIWPHLKTGGT--LVYATCSVLPEENS 383
Query: 391 DVIKSVL 397
IK+ L
Sbjct: 384 LQIKAFL 390
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGK-IVACELNKERVRRL 282
+L AS + AL +PG VLD C+APG KT LA L G + + A +L+ R+ RL
Sbjct: 132 YLMDAASLLPVLALGLQPGDIVLDLCAAPGGKT--LALLQTGCCRNLAANDLSPSRIARL 189
Query: 283 KDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG--SGTAAERLDHLLPSH 340
+ ++LH ++ + +D ++VR D G G +R+ +P
Sbjct: 190 Q-----------KILHS-YVPEEIRDG--NQVRVTSWDGRKWGELEGDTYDRVLVDVPCT 235
Query: 341 ASGHTADPTEMERLNK--------LSAFQKKALRHAL--SFPGVERVVYSTCSIHQVENE 390
H+ E + L Q + L L + PG VVYSTCS+ ++NE
Sbjct: 236 TDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPG-GHVVYSTCSLSHLQNE 294
Query: 391 DVIKSVLPI 399
V++ + +
Sbjct: 295 YVVQGAIEL 303
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 30/189 (15%)
Query: 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGK-IVACELNKERVRRL 282
+L AS + AL +PG VLD C+APG KT LA L G + + A +L+ R+ RL
Sbjct: 131 YLXDAASLLPVLALGLQPGDIVLDLCAAPGGKT--LALLQTGCCRNLAANDLSPSRIARL 188
Query: 283 KDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG--SGTAAERLDHLLPSH 340
+ ++LH ++ + +D ++VR D G G +R+ +P
Sbjct: 189 Q-----------KILHS-YVPEEIRDG--NQVRVTSWDGRKWGELEGDTYDRVLVDVPCT 234
Query: 341 ASGHTADPTEMERLNK--------LSAFQKKALRHAL--SFPGVERVVYSTCSIHQVENE 390
H+ E + L Q + L L + PG VVYSTCS+ ++NE
Sbjct: 235 TDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPG-GHVVYSTCSLSHLQNE 293
Query: 391 DVIKSVLPI 399
V++ + +
Sbjct: 294 YVVQGAIEL 302
>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine
pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine, Mercury Derivative
Length = 180
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299
KPG V+D +APG + ++ + GKG+I+AC+L + + ++ L G
Sbjct: 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDL-----------LPMDPIVGVDFLQG 69
Query: 300 DF 301
DF
Sbjct: 70 DF 71
>pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
Length = 382
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 301
G + LD S G +HLA G ++VA + + E +RR ++ +L+G N+ VL +
Sbjct: 210 GERALDVFSYAGGFALHLAL---GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA 266
Query: 302 LNLDPKDPAYSE-VRAILLDPSCSGSG 327
+L + E ++LDP G
Sbjct: 267 FDLLRRLEKEGERFDLVVLDPPAFAKG 293
>pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
Length = 382
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 301
G + LD S G +HLA G ++VA + + E +RR ++ +L+G N+ VL +
Sbjct: 210 GERALDVFSYAGGFALHLAL---GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA 266
Query: 302 LNLDPKDPAYSE-VRAILLDPSCSGSG 327
+L + E ++LDP G
Sbjct: 267 FDLLRRLEKEGERFDLVVLDPPAFAKG 293
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 15/92 (16%)
Query: 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 274
+PLI+N S + AAL +P VL+ GN TV L L K K K+VACEL
Sbjct: 13 NPLIIN---------SIIDKAAL--RPTDVVLEVGPGTGNMTVKL--LEKAK-KVVACEL 58
Query: 275 NKERVRRLKDTIKLSG-AANIEVLHGDFLNLD 305
+ V L ++ + A+ ++VL GD L D
Sbjct: 59 DPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 90
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE-------LNKERVR 280
K +M+ + + PG VL+A S G ++ L+ + +G++++ E L K+ +
Sbjct: 92 KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK 151
Query: 281 RLKDTIKLSGAA----NIEVLHGDFLNL--DPKDPAYSEVRAILLDPSCS 324
+D+ KLS N++ +H D D K + V +L+P +
Sbjct: 152 HWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVT 201
>pdb|1YB2|A Chain A, Structure Of A Putative Methyltransferase From
Thermoplasma Acidophilum
Length = 275
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-KLSGAANIEVLH 298
+PG +L+ GN + ++ + GKG + E +++ +++ D + + N+
Sbjct: 109 RPGXDILEVGVGSGNXSSYILYALNGKGTLTVVERDEDNLKKAXDNLSEFYDIGNVRTSR 168
Query: 299 GDFLNLDPKDPAYSEVRAILLDP 321
D + D Y V A + DP
Sbjct: 169 SDIADF-ISDQXYDAVIADIPDP 190
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299
K G VLD + G +L+ ++ KGK+ A ++ +E V + + G N+EVL
Sbjct: 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKS 95
Query: 300 D 300
+
Sbjct: 96 E 96
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
PG KVL+A G +TV LA +I + +++ E + + ++ + +G N++ L +
Sbjct: 37 PGAKVLEAGCGIGAQTVILAK-NNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQAN 95
Query: 301 FLNLDPKDPAYSEV 314
+L +D ++ +
Sbjct: 96 IFSLPFEDSSFDHI 109
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290
M+ L KPG KVL+ + G A ++ G +V+ E E + + T++ G
Sbjct: 67 GMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG 126
Query: 291 AANIEVLHGD----FLNLDPKDPAYS 312
N+ V+ GD + L P D Y+
Sbjct: 127 YDNVIVIVGDGTLGYEPLAPYDRIYT 152
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 225 LQGKASSMVAAALA----PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
L+G + ++A AL +PG +VLD + G + A+ + + A +L+++R+
Sbjct: 183 LRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLG 242
Query: 281 RLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321
++ SG + I L D +L P+ + EV IL +P
Sbjct: 243 LAREAALASGLSWIRFLRADARHL-PR--FFPEVDRILANP 280
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKG-----KIVACELNKERVRRLK-----DTIKLS 289
KPG ++LD S G T +K KG +IV E E VRR K D +
Sbjct: 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML 142
Query: 290 GAANIEVLHGDFLNLDPKDPAYSEV 314
+ + ++ GD P + Y+ +
Sbjct: 143 DSGQLLIVEGDGRKGYPPNAPYNAI 167
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
G + K ++++ A PG +++A G T+ LA ++ +G++V+ E+ ++ +
Sbjct: 73 GPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAK 132
Query: 281 RLKDTIKLSG 290
+ IK +G
Sbjct: 133 LAWENIKWAG 142
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
G + K ++++ A PG +++A G T+ LA ++ +G++V+ E+ ++ +
Sbjct: 73 GPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAK 132
Query: 281 RLKDTIKLSG 290
+ IK +G
Sbjct: 133 LAWENIKWAG 142
>pdb|2L7N|A Chain A, Nmr Structure Of The B Domain Of Talin
Length = 168
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 308 DPAYSEVRAILLDPSCSGSGTAAERLDHLLP-----SHASGHTADPTEMERLNKLSAFQK 362
DPA V+AI+LD TA++ LD ASGH DP +RL +++
Sbjct: 105 DPA---VQAIVLD-------TASDVLDKASSLIEEAKKASGHPGDPESQQRLAQVAKAVT 154
Query: 363 KALRHALS-FPG 373
+AL +S PG
Sbjct: 155 QALNRCVSCLPG 166
>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a)
pdb|1HSO|B Chain B, Human Alpha Alcohol Dehydrogenase (Adh1a)
pdb|1U3T|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Alpha-
Alpha Isoform Complexed With N-Cyclopentyl-N-
Cyclobutylformamide Determined To 2.5 Angstrom
Resolution
pdb|1U3T|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Alpha-
Alpha Isoform Complexed With N-Cyclopentyl-N-
Cyclobutylformamide Determined To 2.5 Angstrom
Resolution
Length = 374
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNK 276
GC F G S++ A + P C+ G V L+A+M G +I+A ++NK
Sbjct: 173 GCGFSTGYGSAVNVAKVTPG------STCAVFGLGGVGLSAIMGCKAAGAARIIAVDINK 226
Query: 277 ERVRRLKD 284
++ + K+
Sbjct: 227 DKFAKAKE 234
>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDZ|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
Length = 374
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNK 276
GC F G S++ A + P C+ G V L+A+M G +I+A ++NK
Sbjct: 173 GCGFSTGYGSAVNVAKVTPG------STCAVFGLGGVGLSAVMGCKAAGAARIIAVDINK 226
Query: 277 ERVRRLKD 284
++ + K+
Sbjct: 227 DKFAKAKE 234
>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDY|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
Length = 374
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNK 276
GC F G S++ A + P C+ G V L+A+M G +I+A ++NK
Sbjct: 173 GCGFSTGYGSAVNVAKVTPG------STCAVFGLGGVGLSAVMGCKAAGAARIIAVDINK 226
Query: 277 ERVRRLKD 284
++ + K+
Sbjct: 227 DKFAKAKE 234
>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|1HDX|B Chain B, Three-Dimensional Structures Of Three Human Alcohol
Dehydrogenase Variants: Correlations With Their
Functional Differences
pdb|3HUD|A Chain A, The Structure Of Human Beta 1 Beta 1 Alcohol
Dehydrogenase: Catalytic Effects Of Non-Active-Site
Substitutions
pdb|3HUD|B Chain B, The Structure Of Human Beta 1 Beta 1 Alcohol
Dehydrogenase: Catalytic Effects Of Non-Active-Site
Substitutions
pdb|1DEH|A Chain A, Crystallization Of Human Beta1 Alcohol Dehydrogenase (15
MgML) IN 50 MM SODIUM PHOSPHATE (PH 7.5), 2.0 MM NAD+
AND 1 Mm 4-Iodopyrazole At 25 Oc, 13% (WV) PEG 8000
pdb|1DEH|B Chain B, Crystallization Of Human Beta1 Alcohol Dehydrogenase (15
MgML) IN 50 MM SODIUM PHOSPHATE (PH 7.5), 2.0 MM NAD+
AND 1 Mm 4-Iodopyrazole At 25 Oc, 13% (WV) PEG 8000
pdb|1HSZ|A Chain A, Human Beta-1 Alcohol Dehydrogenase (Adh1b1)
pdb|1HSZ|B Chain B, Human Beta-1 Alcohol Dehydrogenase (Adh1b1)
pdb|1U3U|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-benzylformamide
Determined To 1.6 Angstrom Resolution
pdb|1U3U|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-benzylformamide
Determined To 1.6 Angstrom Resolution
pdb|1U3V|A Chain A, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-Heptylformamide
Determined To 1.65 Angstrom Resolution
pdb|1U3V|B Chain B, Crystal Structure Of Human Alcohol Dehydrogenase Beta-1-
Beta-1 Isoform Complexed With N-Heptylformamide
Determined To 1.65 Angstrom Resolution
Length = 374
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNK 276
GC F G S++ A + P C+ G V L+A+M G +I+A ++NK
Sbjct: 173 GCGFSTGYGSAVNVAKVTPG------STCAVFGLGGVGLSAVMGCKAAGAARIIAVDINK 226
Query: 277 ERVRRLKD 284
++ + K+
Sbjct: 227 DKFAKAKE 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,634,128
Number of Sequences: 62578
Number of extensions: 432230
Number of successful extensions: 1248
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 40
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)