BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013515
(441 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96P11|NSUN5_HUMAN Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2
Length = 429
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 209/366 (57%), Gaps = 34/366 (9%)
Query: 56 GSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
GSIK LVYS + +N K YALVC+T ++ +++ V+ SA +L ++ K + L +L Y++
Sbjct: 19 GSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVLVYEL 78
Query: 116 LFGQEISLVGDAEKFLM-LHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPK--PRYV 172
L G+ G K L+ H+ ++ LA+L V V EDL+ + P PR+V
Sbjct: 79 LLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV 138
Query: 173 RVNTLKMDVDSAVLEL---------------------GKQFVVQKDDLVPDLLILPPGCD 211
RVNTLK D V GK F++ D L+P+LL+ P D
Sbjct: 139 RVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLL--DPLMPELLVFPAQTD 196
Query: 212 LHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVA 271
LH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K +GKI A
Sbjct: 197 LHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFA 256
Query: 272 CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAE 331
+L+ +R+ + + +G + E+ DFL + P DP Y EV ILLDPSCSGSG +
Sbjct: 257 FDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSR 316
Query: 332 RLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENED 391
+L+ T P RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+ Q ENED
Sbjct: 317 QLE-----EPGAGTPSPV---RLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENED 368
Query: 392 VIKSVL 397
V++ L
Sbjct: 369 VVRDAL 374
>sp|Q8K4F6|NSUN5_MOUSE Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2
Length = 465
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 148/380 (38%), Positives = 215/380 (56%), Gaps = 31/380 (8%)
Query: 56 GSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
GS+K LVYS + +N K YALVC+T ++ +++ V+ SA +L ++ K + L +L Y++
Sbjct: 19 GSLKGLVYSSNFQNLKQLYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVLVYEL 78
Query: 116 LFGQEISLVGDAEKFLM-LHKGAIQLALAQLLVRNKVKSIEDLMALYQTPD--VPKPRYV 172
L G+ G K L+ H+ ++ LA+L V V EDL+ P PR+V
Sbjct: 79 LLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNEDLLQESSRPGQAYQVPRFV 138
Query: 173 RVNTLKMDVDSAVLELGKQ-FVVQ-KDDLVPDL-----------------LILPPGCDLH 213
RVNTLK + A+ +Q F Q + + DL L+ P DLH
Sbjct: 139 RVNTLKTRPEDAIDYFKRQGFSYQGRASSLEDLRALKGQHFLLDPLLPELLVFPAQTDLH 198
Query: 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 273
HPL G + LQ KAS + A L+P PG V+DAC+APGNKT ++AAL+K +GKI A +
Sbjct: 199 EHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFD 258
Query: 274 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL 333
+ +R+ + + +G + E+ DFL + P D YS+V+ ILLDPSCSGSG + +L
Sbjct: 259 QDAKRLAAMATLVARAGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLSRQL 318
Query: 334 DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVI 393
+ H G P++ ERL L+ FQ++AL HAL FP ++R+VYSTCS+ Q ENEDV+
Sbjct: 319 E----EHGEG---TPSK-ERLQALAGFQQRALCHALRFPSLQRLVYSTCSLCQEENEDVV 370
Query: 394 KSVLPIAMSFGFQLATPFPN 413
+ L S F+LA P
Sbjct: 371 QEALQ-HNSGTFRLAPVLPT 389
>sp|O14039|YEY6_SCHPO Putative methyltransferase C2C4.06c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC2C4.06c PE=3 SV=3
Length = 460
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 141/360 (39%), Positives = 202/360 (56%), Gaps = 31/360 (8%)
Query: 56 GSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
GSIK L ++ + K TYALVC+TLK+ ++ +++ + +L + K +E L +L +D+
Sbjct: 19 GSIKQLAFNSKKHDPKRTYALVCETLKYKPVLDEIIARSELLVLEKKLKENLARVLVHDL 78
Query: 116 LF---GQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYV 172
L G IS G ++ ++ HK + +L V+ VKS E+L + P V PR++
Sbjct: 79 LMSKRGLSIS-NGPIKECILRHKTRLNAEFVKLKVKKGVKSHEELA--LKNP-VSLPRWL 134
Query: 173 RVNTLK-----------MDVDSAVLELG-KQFVVQKDDLVPDLLILPPGCDLHVHPLIVN 220
R+NT+K +D S++ ELG +F + DD V +L+ + P + + L
Sbjct: 135 RINTIKSTKDEVLQGLGLDKVSSIEELGPDKFYI--DDCVENLIAIDPSFPIVENSLYKE 192
Query: 221 GCVFLQGKASSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKER 278
G V +Q KAS AA LA G ++D C+APGNKT HLAA K I A E + +R
Sbjct: 193 GKVIIQDKASCFPAAVLAGLTGHVGDIIDGCAAPGNKTTHLAACFP-KSHIFAFERDAKR 251
Query: 279 VRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLP 338
V+ L+ + +SGA N+ + H DF DPK Y V ILLDPSCSGSG + R D+LL
Sbjct: 252 VQTLRKMVGISGANNVTIEHQDFTLTDPKSDLYRNVTHILLDPSCSGSGIVS-RQDYLL- 309
Query: 339 SHASGHTADPTE-MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 397
G+ D TE ERL L +FQ L+HAL FP V YSTCS+H++ENE V+ VL
Sbjct: 310 ----GNEQDVTEDTERLENLCSFQSTILKHALQFPNCRHVTYSTCSVHRLENEQVVCEVL 365
>sp|P53972|YNC2_YEAST Uncharacterized protein YNL022C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YNL022C PE=1 SV=1
Length = 490
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 204/416 (49%), Gaps = 55/416 (13%)
Query: 36 REAAKVLRLVLRGDARRRAVGSIKSLVYSPSVK-----NKKATYALVCQTLKHLSIIKQV 90
R+A VL + + A+ R GS+++LV + N K YA++ K+ +++V
Sbjct: 5 RDATWVLEDIEKEAAKERISGSMQTLVLKSCKRYKLKSNPKHIYAVLDSCWKYKPYLEKV 64
Query: 91 LDSASILNSKWKRQEELVY-------ILTYDILFGQEISLVGD--AEKFLMLHKGAIQLA 141
+ A IL K++ + ++ + +L Q+ +G + +++ K +
Sbjct: 65 MKKAHILEDIPKKKGKPLFSRLTLLLLCHDLLLSKQKRIQMGKHPIKDYVLKFKSPLHSE 124
Query: 142 LAQLLVRNKVKSIEDL-MALYQTPDVPKPRYVRVNTLKM----DVDSAVLELGKQFVVQ- 195
+ +L ++ KV+ + +L ++ + D+P R++R+N LK + + + EL K+F ++
Sbjct: 125 MVKLKLKLKVRELSELVLSEDISNDLPPVRWIRINPLKCHPNGETEPVLAELRKKFTLKV 184
Query: 196 ------------KDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 243
D+ +P+L + P + H L +G + +Q +AS A L P P
Sbjct: 185 DKWSELVPGSIYYDEFIPNLFGIHPSDKITAHELYKHGKIIIQDRASCFPAHILNPGPSD 244
Query: 244 KVLDACSAPGNKTVHLAALM------KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEV 296
V+D+CSAPGNKT H A+ + +I A E + ER + L+ IK++G + NI V
Sbjct: 245 IVIDSCSAPGNKTTHTASYIYPEPPKDNNTRIYAFEKDPERAKVLQKMIKIAGCSPNISV 304
Query: 297 LHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL---------------DHLLPSHA 341
GDF L + Y +V ++DPSCSGSG + ++P
Sbjct: 305 NVGDFTKLATPE-KYKDVTCFIVDPSCSGSGIFGRKFFDSFNRRKIDDKDDDGGIVPDEQ 363
Query: 342 SGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 397
A RL KLS+FQ + ++HA+SFP +++VYSTCSIH ENE V+ +L
Sbjct: 364 EEFIAKEELQTRLAKLSSFQFQMVKHAMSFPAAKKIVYSTCSIHAEENERVVIDLL 419
>sp|Q63ZY6|NSN5C_HUMAN Putative methyltransferase NSUN5C OS=Homo sapiens GN=NSUN5P2 PE=5
SV=2
Length = 315
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 114/198 (57%), Gaps = 8/198 (4%)
Query: 200 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHL 259
+P+LL+ P DLH HPL G + LQ +AS + A L P+ KT HL
Sbjct: 1 MPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHL 60
Query: 260 AALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319
AAL+K +GKI A +L+ R+ + + +G + E+ DFL + P DP Y EV +LL
Sbjct: 61 AALLKNQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLL 120
Query: 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY 379
DPSCSGSG + +L+ T P RL+ L+ FQ++AL HAL+FP ++R+VY
Sbjct: 121 DPSCSGSGMPSRQLE-----EPGAGTPSPV---RLHALAGFQQRALCHALTFPSLQRLVY 172
Query: 380 STCSIHQVENEDVIKSVL 397
S CS+ Q ENED+++ L
Sbjct: 173 SMCSLCQEENEDMVQDAL 190
>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus
subtilis (strain 168) GN=rsmB PE=3 SV=2
Length = 447
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 22/238 (9%)
Query: 166 VPKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 224
+P + +RVN +K D + ++ + + V+K DL D + L G H NG V
Sbjct: 176 IPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTH-FFQNGEVS 234
Query: 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
+Q ++S +VA AL PK VLDAC+APG K+ H+A LMK KG + + +L+K +V+ +K+
Sbjct: 235 IQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294
Query: 285 TIKLSGAANIEVLHGDFLNLDPKDPAY--SEVRAILLDPSCSGSGTAAERLDHLLPSHAS 342
G + ++H + ++ + + IL+D CSG G + D
Sbjct: 295 AADRLG---LTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIRRKPD-------M 344
Query: 343 GHTADPTEMERLNKLSAFQKKALRHALSFPGVER---VVYSTCSIHQVENEDVIKSVL 397
+T P + RL ++ Q LR P V++ +VYSTC++ + EN++VI + +
Sbjct: 345 KYTKKPDDSARLAEI---QLSILREIA--PLVKKGGTLVYSTCTMDRTENDEVIHAFI 397
>sp|Q3KNT7|NSN5B_HUMAN Putative NOL1/NOP2/Sun domain family member 5B OS=Homo sapiens
GN=NSUN5P1 PE=5 SV=1
Length = 163
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 8/108 (7%)
Query: 290 GAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPT 349
G + E+ DFL + P DP Y EV +LLDPSCSGSG + +L+ T P
Sbjct: 9 GVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCSGSGMPSRQLED-----PGAGTPSPV 63
Query: 350 EMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 397
RL+ L+ FQ++AL HAL+FP ++R+VYS CS+ Q ENED++ L
Sbjct: 64 ---RLHALAGFQQRALCHALTFPSLQRLVYSMCSLCQEENEDMVPDAL 108
>sp|Q6D4C8|RSMF_ERWCT Ribosomal RNA small subunit methyltransferase F OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=rsmF PE=3 SV=1
Length = 484
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 128/272 (47%), Gaps = 46/272 (16%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDL 212
S+ED +A Q P R +RVNTLK+ VD A L+L + + Q + + P C
Sbjct: 26 SMEDFIAACQRP---LRRSIRVNTLKISVD-AFLQLAQPYGWQLEPI--------PWCQE 73
Query: 213 HVHPLI--------------VNGCVFLQGKASSMVAAAL---APKPGWKVLDACSAPGNK 255
L ++G ++Q +S + A+AL PG +LD +APG+K
Sbjct: 74 GFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPASALFHHNDAPG-TILDVAAAPGSK 132
Query: 256 TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315
T +AA + +G IVA E + RV+ L I G +N + H D P Y +
Sbjct: 133 TTQIAARLNNEGAIVANEYSASRVKVLHANISRCGVSNTAITHFDGRVFGAALPEYFD-- 190
Query: 316 AILLDPSCSGSGTAAERLDHLLPSHASGHT-ADPTEMERLNKLSAFQKKALRHALSFPGV 374
AILLD CSG G R D SH S + D +R LSAF HAL GV
Sbjct: 191 AILLDAPCSGEGVV--RKDPAAMSHWSQESITDIAATQRDLILSAF------HALKPGGV 242
Query: 375 ERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
++YSTC++++ EN+ V +++ P A F
Sbjct: 243 --MIYSTCTLNRQENQQVCRWLQAQFPDACEF 272
>sp|A4SMI9|RSMF_AERS4 Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
salmonicida (strain A449) GN=rsmF PE=3 SV=1
Length = 476
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 129/274 (47%), Gaps = 55/274 (20%)
Query: 167 PKPRYVRVNTLKMDVDSAVLE---LGKQF-----------VVQKDDLVPDLLILPPGCDL 212
P R +RVNTLK+ V V++ LG QF + + D+ VP L
Sbjct: 35 PLRRSIRVNTLKISVSDFVMQMQPLGWQFDAVPWCETGFWLTRADESVP----------L 84
Query: 213 HVHPLIVNGCVFLQGKASSM--VAAALAP---KPGWKVLDACSAPGNKTVHLAALMKGKG 267
++G ++Q +ASSM V A A K +LDA +APG+KT +AALM +G
Sbjct: 85 GNTAEHLSGLFYIQ-EASSMLPVTALFASDQVKRDGMLLDAAAAPGSKTTQIAALMNNQG 143
Query: 268 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSG 327
+VA E + R++ L I+ G N+ + H D P AILLD CSG G
Sbjct: 144 MLVANEYSSSRLKVLSANIQRCGVTNVGMTHFDAKVFGQWLP--ETFDAILLDAPCSGEG 201
Query: 328 TAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALR---HALSFPGVERVVYSTCSI 384
T + D L +E +++++A Q+ L HAL GV +VYSTC++
Sbjct: 202 TVRKDEDAL----------RNWSIESIDEIAAVQQGLLESAFHALKPGGV--LVYSTCTL 249
Query: 385 HQVENEDVIKSVLPIAMSFG-----FQLATPFPN 413
Q EN+ V +S+L FG LA FPN
Sbjct: 250 SQQENQAVCQSLLE---KFGDALTLDSLADLFPN 280
>sp|A1SWV0|RSMF_PSYIN Ribosomal RNA small subunit methyltransferase F OS=Psychromonas
ingrahamii (strain 37) GN=rsmF PE=3 SV=1
Length = 481
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 140/313 (44%), Gaps = 62/313 (19%)
Query: 149 NKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPP 208
N++K IED +A+ Q P R +RVNTLK+ V+ + +Q V L P
Sbjct: 21 NQLK-IEDFIAVCQRP---LRRAIRVNTLKISVEKFQIRAQEQGWV---------LTAIP 67
Query: 209 GC------DLHVHPL-------IVNGCVFLQGKASSMVAAAL----APKPGWKVLDACSA 251
C +L P + G ++Q +S + AAL P VLDA +A
Sbjct: 68 WCAEGFWIELQEEPTPLGNSAEHLGGLCYIQEASSMLPVAALFHFFTPTTQSIVLDAAAA 127
Query: 252 PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311
PG+KT +AA M G I+ E + R++ L I+ G N+ + H D P
Sbjct: 128 PGSKTTQIAAKMNNSGLIIGNEFSSSRIKMLHANIQRCGIKNVALTHFDARVFGKWLPGT 187
Query: 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTAD---PTEMERLNKLSAFQKKALRHA 368
+ AILLD CSG GT R D ++ S + + T+ E + LSAF HA
Sbjct: 188 FD--AILLDAPCSGEGTV--RKDKYAMNNWSQSSINEIASTQQELI--LSAF------HA 235
Query: 369 LSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIY 428
L G+ ++YSTC++ EN+D+ F L FP E +FL +++
Sbjct: 236 LKEDGI--LIYSTCTLSHEENQDIC-----------FFLKDKFP----EHIEFLDLETLF 278
Query: 429 FEPIQWKTKKAFL 441
+ + +T + FL
Sbjct: 279 TDAKKTRTAEGFL 291
>sp|Q8EKR0|RSMB_SHEON Ribosomal RNA small subunit methyltransferase B OS=Shewanella
oneidensis (strain MR-1) GN=rsmB PE=3 SV=1
Length = 428
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 22/234 (9%)
Query: 169 PRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGK 228
P ++R N L D + L K + L D ++L D+ PL + G +Q
Sbjct: 168 PMWLRNNRLSQSRDEYLAALDKLEIDASAGLSDDAILLAAPKDVATLPLFLEGAASVQDG 227
Query: 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-K 287
A+ A LAP+ +LDAC+APG K+ HL L + K++A + + +R+ R++ + +
Sbjct: 228 AAQWAATLLAPQANELILDACAAPGGKSCHLLEL-EPSIKLIAVDFDAKRLERVQQNLDR 286
Query: 288 LSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLD--HLLPSHASGHT 345
LS A EV+HGD N+D + ILLD CS +G D L +H
Sbjct: 287 LSLKA--EVIHGDAANIDSWWQG-EQFDRILLDAPCSATGVIRRHPDIKWLRKNH----- 338
Query: 346 ADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 397
+ +L+ Q++ L H + PG ++Y+TCSI EN D I + L
Sbjct: 339 -------DIEELAELQRQILDHCWKWLKPG-GTLLYATCSILPQENRDQISAFL 384
>sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6 OS=Mus musculus GN=Nsun6 PE=2 SV=2
Length = 476
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 90/183 (49%), Gaps = 26/183 (14%)
Query: 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRL 282
+FLQ S++VA L P+PG K+LD C+APG KT H AALM+ KG+++A + +V +L
Sbjct: 216 IFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDKGEVIALDKILTKVNKL 275
Query: 283 KDTIKLSGAANIEVLHGD---FLNLDPKD-----PAY--SEVRAILLDPSCSGSGTAAER 332
K L G +I D L LD D P + I+LD CSG G
Sbjct: 276 KQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDRIILDAPCSGMGQR--- 332
Query: 333 LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENE 390
P+ A T ++ + Q+K L A+ PG +VYSTC+I ENE
Sbjct: 333 -----PNMACTWT-----LKEVTSYQPLQRKLLHVAVQLLKPG-GVLVYSTCTITLAENE 381
Query: 391 DVI 393
+ +
Sbjct: 382 EQV 384
>sp|A7MKH5|RSMF_CROS8 Ribosomal RNA small subunit methyltransferase F OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rsmF PE=3 SV=2
Length = 480
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 139/287 (48%), Gaps = 51/287 (17%)
Query: 128 EKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLE 187
E FL + + A+ LA ++D +A Q P R +RVNTLK+ VD+ + +
Sbjct: 11 EAFLDVMREAMPAGLA----------MDDFIAACQRP---LRRSIRVNTLKISVDAFLAQ 57
Query: 188 L---GKQ----------FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVA 234
+ G Q F +++DD D L L + H ++G ++Q +S +
Sbjct: 58 VAPYGWQLTPVPWCPEGFWIERDD--EDALPLGSTAE---H---LSGQFYIQEASSMLPV 109
Query: 235 AAL---APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291
AAL P +V+D +APG+KT +AALM+ +G I+A E + RV+ L I G
Sbjct: 110 AALFADGNTPA-RVMDVAAAPGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGI 168
Query: 292 ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTE 350
N+ + H D P + AILLD CSG G + D L S S T+
Sbjct: 169 HNVGLTHFDGRVFGAALP--EQFDAILLDAPCSGEGVVRKDPDALRNWSPQSDQEIAATQ 226
Query: 351 MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVL 397
E ++ SAF HAL+ G +VYSTC++++ EN++ ++ +L
Sbjct: 227 RELID--SAF------HALAPGGT--LVYSTCTLNREENQETVRWLL 263
>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP8B7.20c PE=1 SV=1
Length = 608
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 114/257 (44%), Gaps = 28/257 (10%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVP-------DLLI 205
S+ + + ++ ++P+P +R NTLK + EL + + + +L P L +
Sbjct: 248 SVSEAVEFFEANEMPRPVTIRTNTLK----TQRRELAQALINRGVNLEPIGKWSKVGLQV 303
Query: 206 LPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG 265
+ P + G LQ +S + ALAP+P ++LD SAPG K ++AAL K
Sbjct: 304 FESQVPIGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKN 363
Query: 266 KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG 325
G I A + NK R + L I G N V + D + +LLD CSG
Sbjct: 364 TGIIFANDSNKARTKALSANIHRLGVRNAIVCNYDGRKF--PNEVIGGFDRVLLDAPCSG 421
Query: 326 SGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVER-----VVYS 380
+G + D + ++ S D LS Q++ L A+ + +VYS
Sbjct: 422 TGVIYK--DQSVKTNKSERDFD--------TLSHLQRQLLLSAIDSVNADSKTGGFIVYS 471
Query: 381 TCSIHQVENEDVIKSVL 397
TCSI E+E VI+ L
Sbjct: 472 TCSITVDEDEAVIQYAL 488
>sp|B7NBI3|RSMF_ECOLU Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 129/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTASYGWTLTPIPWCEEGFWIERDD 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M +G I+A E + RV+ L I G N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALCPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCRWLKETYPDAVEF 271
>sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=trm4 PE=1 SV=1
Length = 274
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 24/246 (9%)
Query: 157 LMALYQTPDVPKPRYVRVNTLKMDVDSAVLEL-GKQFVVQKDDLVPDLLILPPGCDLHVH 215
+M +Y+ K +++RVNTLK++ + L K V++K L + +
Sbjct: 1 MMIVYKGE---KMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGST 57
Query: 216 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN 275
P + G Q +S + L P+ +LD C+APG KT HLA LMK KG IVA E++
Sbjct: 58 PEYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEIS 117
Query: 276 KERVRRLKDTIKLSGAANIEVLHGD---FLNLDPKDPAYSEVRAILLDPSCSGSGTAAER 332
K R + LK I G N +++ D + + K+ + + ILLD CSG+
Sbjct: 118 KTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFD--KILLDAPCSGN------ 169
Query: 333 LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVE-RVVYSTCSIHQVENED 391
+ + + ++ E + S QK+ + + + +VYSTCS+ ENE+
Sbjct: 170 ----IIKDKNRNVSE----EDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEE 221
Query: 392 VIKSVL 397
VIK +L
Sbjct: 222 VIKYIL 227
>sp|B5YQX9|RSMF_ECO5E Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 127/273 (46%), Gaps = 48/273 (17%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVD-------------SAVLELGKQFVVQKDDL 199
S +D +A Q P R +RVNTLK V + + + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKTSVADFLRLTAPYGWTLTPIPWCEEGFWIERDD- 80
Query: 200 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGN 254
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG+
Sbjct: 81 -EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGS 130
Query: 255 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314
KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 131 KTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFD- 189
Query: 315 RAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 373
AILLD CSG G + D L S S T+ E ++ SAF HAL G
Sbjct: 190 -AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRSGG 240
Query: 374 VERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
+VYSTC++++ ENE V +K P A+ F
Sbjct: 241 T--LVYSTCTLNREENESVCLWLKETYPDAVEF 271
>sp|Q8XCL9|RSMF_ECO57 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 GN=rsmF PE=3 SV=2
Length = 479
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 127/273 (46%), Gaps = 48/273 (17%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVD-------------SAVLELGKQFVVQKDDL 199
S +D +A Q P R +RVNTLK V + + + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKTSVADFLRLTAPYGWTLTPIPWCEEGFWIERDD- 80
Query: 200 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGN 254
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG+
Sbjct: 81 -EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGS 130
Query: 255 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314
KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 131 KTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFD- 189
Query: 315 RAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 373
AILLD CSG G + D L S S T+ E ++ SAF HAL G
Sbjct: 190 -AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRSGG 240
Query: 374 VERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
+VYSTC++++ ENE V +K P A+ F
Sbjct: 241 T--LVYSTCTLNREENESVCLWLKETYPDAVEF 271
>sp|B7L7N7|RSMF_ECO55 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|A7ZMV8|RSMF_ECO24 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|A8FWM8|RSMF_SHESH Ribosomal RNA small subunit methyltransferase F OS=Shewanella
sediminis (strain HAW-EB3) GN=rsmF PE=3 SV=1
Length = 478
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 128/278 (46%), Gaps = 39/278 (14%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDV-DSAVLELGKQFVVQKDDLVPDLLILPPGCD 211
S++D ++ P P +R+NTLK+ D L K + ++ D + D
Sbjct: 21 SMDDFISYSSKPLRPS---IRINTLKISSQDFIALMAPKGWTLEPIPWCQDGFWISLDSD 77
Query: 212 LHVHPLI--VNGCVFLQGKASSMVAAAL----APKPGWKVLDACSAPGNKTVHLAALMKG 265
+ + + + G ++Q +S + AL K +LD SAPG+KT +AA+M
Sbjct: 78 VQLGNTVEHLQGLFYIQEASSMLPPIALFSTKTDKAEHTILDMASAPGSKTTQIAAMMDN 137
Query: 266 KGKIVACELNKERVRRLKDTIKLSGAANIEVLH------GDFLNLDPKDPAYSEVRAILL 319
G ++A E + RV+ L + G +N + H G++L Y + AILL
Sbjct: 138 SGLLIANEYSSSRVKVLHANVLRMGVSNTALTHFDARVFGEYL--------YDQFDAILL 189
Query: 320 DPSCSGSGTAAERLDHL-LPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVV 378
D CSG GT R D L L + + E ++ SAF L+ +V
Sbjct: 190 DAPCSGEGTI--RKDPLALNNWGLAENSAIAETQKALLESAF--------LALKTGGSLV 239
Query: 379 YSTCSIHQVENEDV---IKSVLPIAMSFGFQLATPFPN 413
YSTC++ ++EN+DV ++S P A+ F LAT FP+
Sbjct: 240 YSTCALSKLENQDVCEHLRSTFPEAVEFE-SLATLFPD 276
>sp|B1LD37|RSMF_ECOSM Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDD 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC++++ ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNREENEAVCLWLKETYPDAVEF 271
>sp|B6IBR3|RSMF_ECOSE Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SE11) GN=rsmF PE=3 SV=2
Length = 479
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|B7M2B1|RSMF_ECO8A Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O8 (strain IAI1) GN=rsmF PE=3 SV=1
Length = 479
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADDNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmF PE=3 SV=2
Length = 479
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|B2U477|RSMF_SHIB3 Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmF PE=3
SV=2
Length = 479
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|A1S788|RSMF_SHEAM Ribosomal RNA small subunit methyltransferase F OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=rsmF PE=3
SV=1
Length = 467
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 117/238 (49%), Gaps = 40/238 (16%)
Query: 172 VRVNTLKMDVDS--AVLE-LGKQF--VVQKDD----LVPDLLILPPGCDLHVHPLIVNGC 222
+RVNTLK+ D+ A+LE G QF V +D VPD PG +L H G
Sbjct: 37 IRVNTLKITSDALRAILEPRGWQFEPVPWCEDGFWVTVPD--DCQPG-NLTEH---YQGL 90
Query: 223 VFLQGKASSMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
++Q +S M AL +P +LD SAPG+KT LAALM +G I+A E + R +
Sbjct: 91 FYIQEASSMMPPCALFMDKEPRQLLLDVASAPGSKTTQLAALMHNQGLIIANEYSASRTK 150
Query: 281 RLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSH 340
L ++ G AN+ + D Y + AI LD CSG GT R D L
Sbjct: 151 ALHANLQRMGVANVAITQFDGRVFGAH--LYETLDAIQLDAPCSGEGTV--RKDPL---- 202
Query: 341 ASGHTADPTEMERLNKL------SAFQKKALRHALSFPGVERVVYSTCSIHQVENEDV 392
S P E+E + +L SAFQ AL GV +VYSTC++++ ENEDV
Sbjct: 203 -SLKNWCPDEIEAIAELQRDLIDSAFQ------ALKPGGV--LVYSTCTLNRRENEDV 251
>sp|Q32F19|RSMF_SHIDS Ribosomal RNA small subunit methyltransferase F OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmF PE=3 SV=2
Length = 479
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 135/288 (46%), Gaps = 50/288 (17%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVD-------------SAVLELGKQFVVQKDDL 199
S +D +A Q P R +RVNTLK+ V + + + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISVADFLRLTAPYGWTLTPIPWCEEGFWIERDN- 80
Query: 200 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGN 254
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG+
Sbjct: 81 -EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDIAAAPGS 130
Query: 255 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314
KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 131 KTTQIAARMNNEGTILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD- 189
Query: 315 RAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 373
AILLD CSG G + D L S S T+ E ++ SAF HAL G
Sbjct: 190 -AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRLGG 240
Query: 374 VERVVYSTCSIHQVENEDV---IKSVLPIAMSFGFQLATPFPNGTAEA 418
+VYSTC++++ ENE V +K P A+ F L FP GT +A
Sbjct: 241 T--LVYSTCTLNREENEAVCLWLKETYPDAVEF-LPLGDLFP-GTNKA 284
>sp|A6TB06|RSMF_KLEP7 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmF PE=3 SV=2
Length = 477
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 123/263 (46%), Gaps = 43/263 (16%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVD---SAVLELGKQ----------FVVQKDDL 199
S +D +A Q P R +RVNTLK+ VD S V G Q F ++++D
Sbjct: 25 SFDDFIAACQRP---LRRSIRVNTLKISVDDFLSLVAPYGWQLAPVPWCAEGFWIERED- 80
Query: 200 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGN 254
D L L + H ++G ++Q +S + AAL P+ +V+D +APG+
Sbjct: 81 -DDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADNRQPE---RVMDVAAAPGS 130
Query: 255 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314
KT +AA M G I+A E + RV+ L I G +N+ + H D P
Sbjct: 131 KTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP--ETF 188
Query: 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV 374
AILLD CSG G + D L + + D +R SAF HAL G
Sbjct: 189 DAILLDAPCSGEGVVRKDAD-ALKNWSPESNLDIAATQRELIDSAF------HALRPGGT 241
Query: 375 ERVVYSTCSIHQVENEDVIKSVL 397
+VYSTC++++ EN+ VI+ +L
Sbjct: 242 --LVYSTCTLNREENQSVIEWLL 262
>sp|P76273|RSMF_ECOLI Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12) GN=rsmF PE=1 SV=2
Length = 479
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT ++A M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|B1XHA3|RSMF_ECODH Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / DH10B) GN=rsmF PE=3 SV=1
Length = 479
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT ++A M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|C4ZZJ2|RSMF_ECOBW Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmF PE=3 SV=1
Length = 479
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT ++A M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|Q3Z2H4|RSMF_SHISS Ribosomal RNA small subunit methyltransferase F OS=Shigella sonnei
(strain Ss046) GN=rsmF PE=3 SV=2
Length = 479
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT ++A M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC+++Q ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens
GN=NOP2 PE=1 SV=2
Length = 812
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 118/274 (43%), Gaps = 29/274 (10%)
Query: 154 IEDLMALYQTPDVPKPRYVRVNTLKM---DVDSAVLELGKQFVVQKDDLVPDLLILPPGC 210
+ +L+ + +VP+P +R NTLK D+ A++ G L++
Sbjct: 294 LSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSV 353
Query: 211 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 270
+ P + G LQG +S + ALAP+ ++LD C APG KT ++A LMK G I+
Sbjct: 354 PIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVIL 413
Query: 271 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAA 330
A + N ER++ + + G N + H D PK +LLD CSG+G +
Sbjct: 414 ANDANAERLKSVVGNLHRLGVTNTIISHYDGRQF-PK--VVGGFDRVLLDAPCSGTGVIS 470
Query: 331 ERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVER-----VVYSTCSIH 385
+ A D ++ R L QK+ L A+ +VY TCSI
Sbjct: 471 K-------DPAVKTNKDEKDILRCAHL---QKELLLSAIDSVNATSKTGGYLVYCTCSIT 520
Query: 386 QVENEDVIKSVL--------PIAMSFGFQLATPF 411
ENE V+ L P + FG + T F
Sbjct: 521 VEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRF 554
>sp|B5XQ35|RSMF_KLEP3 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae (strain 342) GN=rsmF PE=3 SV=1
Length = 477
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 124/264 (46%), Gaps = 45/264 (17%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKM---DVDSAVLELGKQ----------FVVQKD-- 197
S +D +A Q P R +RVNTLK+ D S V G Q F +++D
Sbjct: 25 SFDDFIAACQRP---LRRSIRVNTLKISVADFLSLVAPYGWQLTPVPWCEEGFWIERDGD 81
Query: 198 DLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSM--VAAALA--PKPGWKVLDACSAPG 253
D +P L ++G ++Q +ASSM VAA A P+P +V+D +APG
Sbjct: 82 DALP----------LGSTAEHLSGLFYIQ-EASSMLPVAALFADNPQPE-RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M G I+A E + RV+ L I G +N+ + H D P
Sbjct: 130 SKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP--EA 187
Query: 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 373
AILLD CSG G + D L + + D +R SAF HAL G
Sbjct: 188 FDAILLDAPCSGEGVVRKDAD-ALKNWSPESNLDIAATQRELIDSAF------HALRPGG 240
Query: 374 VERVVYSTCSIHQVENEDVIKSVL 397
+VYSTC++++ EN+ V++ +L
Sbjct: 241 T--LVYSTCTLNREENQSVVQWLL 262
>sp|Q8NE18|NSUN7_HUMAN Putative methyltransferase NSUN7 OS=Homo sapiens GN=NSUN7 PE=2 SV=4
Length = 718
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 166/391 (42%), Gaps = 62/391 (15%)
Query: 58 IKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW--KRQEELVYILTYD- 114
++SL S ++ +Y L LK+ I++ +L + I S L+ ++ YD
Sbjct: 75 LRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSCIFPSTTIPDHLSSLIIVMLYDF 134
Query: 115 --------ILFGQE--ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQT- 163
+L E IS V + E L + ++ LA L R ++K D +++Y
Sbjct: 135 QDRKFQTRVLSDNEEPISEVQEVENLL----NSFKIKLAAALARCRIK--HDALSIYHIL 188
Query: 164 PDVPK---------PRYVRVNTLKMDVDSAVLELGK------QFVVQKDDLV-------P 201
P+ + P Y +NT K+ + L + + V+ DD V
Sbjct: 189 PETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVKSVLHIDDKVFAVDQHCY 248
Query: 202 DLLILPPGCDLHVHPLIVNGCVF------LQGKASSMVAAALAPKPGWK--VLDACSAPG 253
D+LI P H+ ++N +F Q K+ S+ ++ VL +
Sbjct: 249 DVLIFPS----HLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLNMDDDVLMVNTGSW 304
Query: 254 NKTVHLAALMKGK-GKIVACELNKE-RVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311
H++ L K+ C + + + LK G NIE+LH F+N++ KD
Sbjct: 305 YTVSHMSILTNNNTSKVFVCGVQSQAKDPDLKTLFTKIGCKNIEILHEKFINIESKDHRL 364
Query: 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHAS-----GHTADPTEMERLNKLSAFQKKALR 366
+V+ ILL P CSG G + ++ +L H H+ +++L+ L+ Q + L
Sbjct: 365 QKVKVILLLPRCSGLG-VSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYEQLT 423
Query: 367 HALSFPGVERVVYSTCSIHQVENEDVIKSVL 397
HA+ F + VVY TCS+ ENE V+K L
Sbjct: 424 HAMKFTKAQAVVYCTCSVFPEENEAVVKKAL 454
>sp|A8GDM6|RSMF_SERP5 Ribosomal RNA small subunit methyltransferase F OS=Serratia
proteamaculans (strain 568) GN=rsmF PE=3 SV=2
Length = 478
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDV-DSAVLELGKQFVVQKDDLVPDLLILPPGCD 211
S++D +A Q P R +RVNTLK+ V D L + ++ + + G +
Sbjct: 26 SMDDFIAACQRP---LRRSLRVNTLKISVTDFLTLVQDYDWRLEPIPWCAEGFWIERGDE 82
Query: 212 ---LHVHPLIVNGCVFLQGKASSMV------AAALAPKPGWKVLDACSAPGNKTVHLAAL 262
L ++G ++Q +ASSM+ A A AP +VLD +APG+KT +AAL
Sbjct: 83 ELRLGSAAEHLSGLFYIQ-EASSMLPVSALFAGAEAPS---RVLDVAAAPGSKTTQIAAL 138
Query: 263 MKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322
M +G IVA E + RV+ L I G N+ + H D P AILLD
Sbjct: 139 MNNQGGIVANEYSASRVKVLHANISRCGVKNVALTHFDGRVFGAALP--ESFDAILLDAP 196
Query: 323 CSGSGTAAERLDHLLPSHASGHTA-DPTEMERLNKLSAFQKKALRHALSFPGVERVVYST 381
CSG G + D + TA T+ E ++ SAF HAL+ GV +VYST
Sbjct: 197 CSGEGVVRKDPDAMSNWSPESVTAIADTQRELID--SAF------HALAPGGV--MVYST 246
Query: 382 CSIHQVENEDVIKSVL 397
C+++ EN+ ++ +L
Sbjct: 247 CTLNAQENQQIVNGLL 262
>sp|C6DFU6|RSMF_PECCP Ribosomal RNA small subunit methyltransferase F OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=rsmF PE=3
SV=1
Length = 484
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 126/273 (46%), Gaps = 48/273 (17%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDL 212
S++D +A Q P R +RVNTLK+ V+ A L L + + Q + + P C
Sbjct: 26 SMDDFIAACQRP---LRRSIRVNTLKISVE-AFLRLVQPYGWQLEPI--------PWCQE 73
Query: 213 HVHPLI--------------VNGCVFLQGKASSMVAAALAPKPG--WKVLDACSAPGNKT 256
L ++G ++Q +S + +AL + VLD +APG+KT
Sbjct: 74 GFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPVSALFHRNEALETVLDVAAAPGSKT 133
Query: 257 VHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 316
+AA + KG IVA E + RV+ L I G +N + H D P Y + A
Sbjct: 134 TQIAARLDNKGAIVANEYSASRVKVLHANISRCGVSNTAMTHFDGRVFGAALPEYFD--A 191
Query: 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNK---LSAFQKKALRHALSFPG 373
ILLD CSG G R D SH S + TE+ + LSAF HAL G
Sbjct: 192 ILLDAPCSGEGVV--RKDPAAMSHWSPESI--TEIAATQRDLILSAF------HALKPGG 241
Query: 374 VERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
V ++YSTC++++ EN+ V +++ P A F
Sbjct: 242 V--MIYSTCTLNKQENQQVCHWLQAQFPDACEF 272
>sp|B7NS84|RSMF_ECO7I Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC++++ ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNREENEAVCLWLKETYPDAVEF 271
>sp|A3QDA2|RSMF_SHELP Ribosomal RNA small subunit methyltransferase F OS=Shewanella
loihica (strain ATCC BAA-1088 / PV-4) GN=rsmF PE=3 SV=1
Length = 486
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 35/216 (16%)
Query: 219 VNGCVFLQGKASSMVAAALAPKP-----GWKVLDACSAPGNKTVHLAALMKGKGKIVACE 273
+ G ++Q +S + AL P+P +LD SAPG+KT LAA+M +G +VA E
Sbjct: 87 IQGLFYIQEASSMLPPKALFPEPIEDATSLTLLDMASAPGSKTTQLAAMMNNQGLLVANE 146
Query: 274 LNKERVRRLKDTIKLSGAANIEVLH------GDFLNLDPKDPAYSEVRAILLDPSCSGSG 327
+ RV+ L ++ GA+N+ + H G +L + AILLD C G G
Sbjct: 147 YSSSRVKVLHANVQRMGASNLALTHFDARVFGKYL--------FESFDAILLDAPCGGEG 198
Query: 328 TAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHA-LSFPGVERVVYSTCSIHQ 386
T + D L D +E+E +++ Q+ + A L+ +VYSTC++++
Sbjct: 199 TVRKDPDAL-------KHWDESEIE---AIASVQRDLIESAFLALKPGGSLVYSTCTLNR 248
Query: 387 VENEDV---IKSVLPIAMSFGFQLATPFPNGTAEAS 419
EN+DV +K+ A+ F LA FP G +AS
Sbjct: 249 RENQDVCLHLKATYGDAVQFE-SLAGLFP-GAEKAS 282
>sp|B1J0Q3|RSMF_ECOLC Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmF PE=3 SV=2
Length = 479
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGVAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC++++ ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNREENEAVCMWLKETYPDAVEF 271
>sp|A8A133|RSMF_ECOHS Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O9:H4 (strain HS) GN=rsmF PE=3 SV=2
Length = 479
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 130/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGVAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC++++ ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNREENEAVCMWLKETYPDAVEF 271
>sp|B7LPL0|RSMF_ESCF3 Ribosomal RNA small subunit methyltransferase F OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmF PE=3 SV=1
Length = 479
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 129/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK+ V + L+L + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDD 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL +P+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNSPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M +G I+A E + RV+ L I G N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRVFGAALPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC++++ ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNREENEAVCLWLKETYPDAVEF 271
>sp|B7MVW5|RSMF_ECO81 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O81 (strain ED1a) GN=rsmF PE=3 SV=1
Length = 479
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 129/274 (47%), Gaps = 50/274 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK V + L+L + F +++D+
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKTSV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M +G I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRPG 239
Query: 373 GVERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
G +VYSTC++++ ENE V +K P A+ F
Sbjct: 240 GT--LVYSTCTLNREENEAVCLWLKETYPDAVEF 271
>sp|A0KKI5|RSMF_AERHH Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=rsmF PE=3 SV=2
Length = 475
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 129/270 (47%), Gaps = 49/270 (18%)
Query: 167 PKPRYVRVNTLKMDVDSAVLE---LGKQ-----------FVVQKDDLVPDLLILPPGCDL 212
P R +RVNTLK+ V + V LG Q ++ ++D+ VP L
Sbjct: 35 PLRRSIRVNTLKISVAAFVARMQPLGWQLDPVPWCDTGFWLSREDESVP----------L 84
Query: 213 HVHPLIVNGCVFLQGKASSM--VAAALAPKPGWK---VLDACSAPGNKTVHLAALMKGKG 267
++G ++Q +ASSM V A A + + +LDA +APG+KT +AALM +G
Sbjct: 85 GNTAEHLSGLFYIQ-EASSMLPVTALFACEQTRRDGMLLDAAAAPGSKTTQIAALMNNQG 143
Query: 268 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSG 327
+VA E + R++ L ++ G N+ + H D P AILLD CSG G
Sbjct: 144 MLVANEYSSSRLKVLSANLQRCGVTNVGMTHFDAKVFGQWLP--ETFDAILLDAPCSGEG 201
Query: 328 TAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALR---HALSFPGVERVVYSTCSI 384
+ + D L +E +++++A Q+ L HAL GV +VYSTC++
Sbjct: 202 SVRKDEDAL----------RNWSIESIDEIAAVQQGLLESAFHALKPGGV--LVYSTCTL 249
Query: 385 HQVENEDVIKSVLP-IAMSFGFQ-LATPFP 412
EN+ V +S+L +F F LA FP
Sbjct: 250 SLQENQAVCQSLLDKFGAAFSFDSLADLFP 279
>sp|A4WBJ4|RSMF_ENT38 Ribosomal RNA small subunit methyltransferase F OS=Enterobacter sp.
(strain 638) GN=rsmF PE=3 SV=1
Length = 480
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 127/268 (47%), Gaps = 40/268 (14%)
Query: 167 PKPRYVRVNTLKMDVD-------------SAVLELGKQFVVQKDDLVPDLLILPPGCDLH 213
P R +RVNTLK+ V+ + V + F ++++D D L L +
Sbjct: 36 PLRRSIRVNTLKISVEDFLALVSPYRWQLTPVPWCAEGFWIERED--EDALPLGSTAE-- 91
Query: 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVA 271
H ++G ++Q +S + AL + +V+D +APG+KT +AA M +G I+A
Sbjct: 92 -H---LSGLFYIQEASSMLPVTALFAEDNQPERVMDVAAAPGSKTTQIAARMGNRGVILA 147
Query: 272 CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAE 331
E + RV+ L I G +N+ + H D P AILLD CSG G +
Sbjct: 148 NEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP--ESFDAILLDAPCSGEGVVRK 205
Query: 332 RLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 390
D L S AS T+ E ++ SAF HAL G+ +VYSTC++++ ENE
Sbjct: 206 DPDALKNWSVASNLEIAATQRELID--SAF------HALRPGGM--LVYSTCTLNRDENE 255
Query: 391 DV---IKSVLPIAMSFGFQLATPFPNGT 415
V +K P A+ F L + FP+ T
Sbjct: 256 SVCLWLKEQYPQAVEF-LPLDSLFPSAT 282
>sp|B1KQN1|RSMF_SHEWM Ribosomal RNA small subunit methyltransferase F OS=Shewanella
woodyi (strain ATCC 51908 / MS32) GN=rsmF PE=3 SV=1
Length = 478
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 129/279 (46%), Gaps = 41/279 (14%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAV-LELGKQFVVQKDDLVPDLLILPPGCD 211
+++D ++ P P +R+NTLK+ D V L K + + D + +
Sbjct: 21 TMDDFISYSSKPLRPS---IRINTLKISSDEFVTLMAAKGWTLDPIPWCSDGFWVALDNE 77
Query: 212 LHVHPLI--VNGCVFLQGKASSMVAA-----ALAPKPGWKVLDACSAPGNKTVHLAALMK 264
+ + I + G ++Q +ASSM+ L + +LD SAPG+KT +A+LM
Sbjct: 78 IQLGNTIEHIQGLFYIQ-EASSMLPPTALFDGLDNSSEYTILDMASAPGSKTTQMASLMD 136
Query: 265 GKGKIVACELNKERVRRLKDTIKLSGAANIEVLH------GDFLNLDPKDPAYSEVRAIL 318
KG +VA E + RV+ L ++ G N + H G++L Y + AIL
Sbjct: 137 NKGLLVANEYSSSRVKVLHANVQRMGVYNTALTHFDARVFGEYL--------YHQFDAIL 188
Query: 319 LDPSCSGSGTAAERLDHL-LPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERV 377
LD CSG GT R D L L + + A E ++ SAF L+ +
Sbjct: 189 LDAPCSGEGTI--RKDPLALRNWSLEENASIIETQKALIESAF--------LALKTGGSL 238
Query: 378 VYSTCSIHQVENEDV---IKSVLPIAMSFGFQLATPFPN 413
VYSTC++ + EN++V + S P A+ F L+ FP+
Sbjct: 239 VYSTCALSRSENQEVCEHLMSCFPQAVEFQ-SLSELFPD 276
>sp|A8AFL6|RSMF_CITK8 Ribosomal RNA small subunit methyltransferase F OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rsmF PE=3 SV=1
Length = 479
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 123/272 (45%), Gaps = 46/272 (16%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVD-------------SAVLELGKQFVVQKDDL 199
S +D +A Q P R +RVNTLK+ V + V + F +++DD
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKISVTDFLALTAPYGWSLTPVPWCEEGFWIERDDE 81
Query: 200 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGN 254
LP G H ++G ++Q +S + AAL P+ +++D +APG+
Sbjct: 82 ES----LPLGSTAE-H---LSGLFYIQEASSMLPVAALFAEGNTPE---RIMDVAAAPGS 130
Query: 255 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314
KT +AA M +G I+A E + RV+ L I G +N+ + H D P
Sbjct: 131 KTTQIAARMNNQGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP--ETF 188
Query: 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV 374
AILLD CSG G + D L + + D +R SAF HAL G
Sbjct: 189 DAILLDAPCSGEGVVRKDPD-ALKNWSVESNLDIAATQRELIDSAF------HALRPGGT 241
Query: 375 ERVVYSTCSIHQVENEDV---IKSVLPIAMSF 403
+VYSTC++++ ENE V +K P A+ F
Sbjct: 242 --LVYSTCTLNREENESVCLWLKETYPEAVEF 271
>sp|Q1RAV2|RSMF_ECOUT Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 122/260 (46%), Gaps = 47/260 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK V + L+L + F +++D
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKTSV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDS 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M KG I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNKGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRLG 239
Query: 373 GVERVVYSTCSIHQVENEDV 392
G +VYSTC++++ ENE V
Sbjct: 240 GT--LVYSTCTLNREENEAV 257
>sp|A1AC00|RSMF_ECOK1 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O1:K1 / APEC GN=rsmF PE=3 SV=2
Length = 479
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 122/260 (46%), Gaps = 47/260 (18%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG--------------KQFVVQKDD 198
S +D +A Q P R +RVNTLK V + L+L + F +++D
Sbjct: 25 SFDDFLAACQRP---LRRSIRVNTLKTSV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDS 80
Query: 199 LVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPG 253
D L L + H ++G ++Q +S + AAL AP+ +V+D +APG
Sbjct: 81 --EDALPLGSTAE---H---LSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPG 129
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
+KT +AA M KG I+A E + RV+ L I G +N+ + H D P +
Sbjct: 130 SKTTQIAARMNNKGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Query: 314 VRAILLDPSCSGSGTAAERLDHLLP-SHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372
AILLD CSG G + D L S S T+ E ++ SAF HAL
Sbjct: 190 --AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELID--SAF------HALRLG 239
Query: 373 GVERVVYSTCSIHQVENEDV 392
G +VYSTC++++ ENE V
Sbjct: 240 GT--LVYSTCTLNREENEAV 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,664,906
Number of Sequences: 539616
Number of extensions: 6210528
Number of successful extensions: 17911
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 17154
Number of HSP's gapped (non-prelim): 511
length of query: 441
length of database: 191,569,459
effective HSP length: 121
effective length of query: 320
effective length of database: 126,275,923
effective search space: 40408295360
effective search space used: 40408295360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)