Query 013515
Match_columns 441
No_of_seqs 327 out of 2855
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:38:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14903 16S rRNA methyltransf 100.0 1.3E-63 2.8E-68 511.4 35.2 387 33-441 4-424 (431)
2 PRK14901 16S rRNA methyltransf 100.0 2.4E-63 5.3E-68 511.6 36.6 378 33-441 2-427 (434)
3 TIGR00563 rsmB ribosomal RNA s 100.0 4.2E-61 9E-66 494.2 36.9 381 35-441 1-420 (426)
4 PRK10901 16S rRNA methyltransf 100.0 1.3E-59 2.8E-64 483.0 38.3 380 32-441 2-421 (427)
5 PRK14902 16S rRNA methyltransf 100.0 1.2E-59 2.5E-64 486.1 37.9 392 32-441 3-437 (444)
6 PRK14904 16S rRNA methyltransf 100.0 2.4E-58 5.3E-63 475.9 37.1 388 32-441 2-437 (445)
7 COG0144 Sun tRNA and rRNA cyto 100.0 2.4E-56 5.2E-61 446.2 27.7 273 157-441 71-348 (355)
8 PRK11933 yebU rRNA (cytosine-C 100.0 9.4E-56 2E-60 453.3 27.1 269 159-441 24-301 (470)
9 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 1.6E-54 3.5E-59 420.9 12.3 266 163-441 4-279 (283)
10 KOG1122 tRNA and rRNA cytosine 100.0 5.3E-49 1.1E-53 382.9 21.6 276 153-441 150-435 (460)
11 TIGR00446 nop2p NOL1/NOP2/sun 100.0 1.5E-48 3.3E-53 376.6 24.4 254 172-441 1-259 (264)
12 KOG2360 Proliferation-associat 100.0 1.8E-44 3.8E-49 348.0 21.5 385 37-441 3-407 (413)
13 KOG2198 tRNA cytosine-5-methyl 100.0 7.6E-36 1.6E-40 288.7 14.1 197 195-400 95-315 (375)
14 PRK15128 23S rRNA m(5)C1962 me 99.7 1.1E-15 2.4E-20 155.1 14.5 155 215-397 197-357 (396)
15 COG2519 GCD14 tRNA(1-methylade 99.6 5.9E-15 1.3E-19 137.6 14.4 153 218-418 71-226 (256)
16 COG1092 Predicted SAM-dependen 99.6 3.8E-15 8.3E-20 149.4 10.4 148 215-390 194-345 (393)
17 PF08704 GCD14: tRNA methyltra 99.6 1.1E-14 2.3E-19 138.1 10.3 142 225-410 24-169 (247)
18 PF10672 Methyltrans_SAM: S-ad 99.5 7.5E-15 1.6E-19 141.9 7.4 144 215-389 100-246 (286)
19 PRK11783 rlmL 23S rRNA m(2)G24 99.5 8.4E-14 1.8E-18 151.6 13.6 147 215-389 515-664 (702)
20 COG2242 CobL Precorrin-6B meth 99.5 5.6E-13 1.2E-17 119.3 15.6 137 227-409 20-158 (187)
21 COG2265 TrmA SAM-dependent met 99.5 3E-13 6.6E-18 138.3 14.1 133 231-407 283-415 (432)
22 TIGR01177 conserved hypothetic 99.5 7.2E-13 1.6E-17 132.2 15.3 127 230-385 171-298 (329)
23 PRK03522 rumB 23S rRNA methylu 99.5 3E-13 6.6E-18 134.1 11.6 87 236-327 168-254 (315)
24 cd00620 Methyltransferase_Sun 99.4 7.2E-13 1.6E-17 113.7 11.4 113 32-149 1-121 (126)
25 PRK14967 putative methyltransf 99.4 1.8E-12 3.9E-17 122.3 15.0 142 221-384 14-162 (223)
26 PRK13168 rumA 23S rRNA m(5)U19 99.4 8.4E-13 1.8E-17 136.9 13.7 90 234-326 290-380 (443)
27 PRK00377 cbiT cobalt-precorrin 99.4 1.9E-12 4E-17 119.9 14.2 130 228-397 27-158 (198)
28 TIGR00080 pimt protein-L-isoas 99.4 1.7E-12 3.7E-17 121.8 13.9 100 221-323 57-156 (215)
29 PF05175 MTS: Methyltransferas 99.4 9.9E-13 2.2E-17 118.8 11.9 120 227-378 17-137 (170)
30 PF12847 Methyltransf_18: Meth 99.4 1.6E-12 3.5E-17 108.4 11.9 110 241-382 1-112 (112)
31 COG2226 UbiE Methylase involve 99.4 1.3E-12 2.8E-17 122.9 12.5 123 229-389 39-162 (238)
32 COG2263 Predicted RNA methylas 99.4 4.1E-12 8.9E-17 113.4 13.9 130 224-398 26-157 (198)
33 TIGR00479 rumA 23S rRNA (uraci 99.4 2.2E-12 4.7E-17 133.5 13.8 90 234-326 285-375 (431)
34 TIGR03704 PrmC_rel_meth putati 99.4 4.5E-12 9.8E-17 121.6 14.8 127 242-383 87-218 (251)
35 TIGR00537 hemK_rel_arch HemK-r 99.4 8.3E-12 1.8E-16 113.6 15.1 157 227-409 5-162 (179)
36 PF13659 Methyltransf_26: Meth 99.4 6E-13 1.3E-17 112.1 6.4 114 242-382 1-116 (117)
37 PRK00202 nusB transcription an 99.4 2.9E-12 6.3E-17 111.6 10.8 116 31-149 3-127 (137)
38 PF01209 Ubie_methyltran: ubiE 99.4 1.5E-12 3.3E-17 123.3 9.7 122 232-390 38-160 (233)
39 PF05958 tRNA_U5-meth_tr: tRNA 99.4 1.7E-12 3.7E-17 130.4 10.4 91 233-327 189-292 (352)
40 PF01029 NusB: NusB family; I 99.4 4.4E-12 9.5E-17 109.9 11.5 115 32-149 1-131 (134)
41 TIGR01951 nusB transcription a 99.4 4.9E-12 1.1E-16 108.9 11.4 114 33-149 3-125 (129)
42 cd00619 Terminator_NusB Transc 99.4 6.3E-12 1.4E-16 108.4 11.4 114 33-149 3-125 (130)
43 COG4123 Predicted O-methyltran 99.4 1.1E-11 2.4E-16 116.8 13.7 145 229-398 32-183 (248)
44 PRK13942 protein-L-isoaspartat 99.4 1.3E-11 2.7E-16 115.6 13.8 98 221-321 56-153 (212)
45 PRK07402 precorrin-6B methylas 99.3 2.6E-11 5.6E-16 112.0 15.5 147 221-409 20-167 (196)
46 PTZ00146 fibrillarin; Provisio 99.3 1.7E-11 3.7E-16 118.3 14.6 84 237-322 128-211 (293)
47 PRK08287 cobalt-precorrin-6Y C 99.3 2.5E-11 5.4E-16 111.3 14.9 132 223-398 13-145 (187)
48 TIGR02085 meth_trns_rumB 23S r 99.3 6.9E-12 1.5E-16 127.2 12.0 85 236-325 228-312 (374)
49 TIGR00138 gidB 16S rRNA methyl 99.3 3.6E-11 7.8E-16 109.7 15.1 127 241-412 42-169 (181)
50 TIGR03533 L3_gln_methyl protei 99.3 3.1E-11 6.6E-16 117.9 15.3 127 239-382 119-252 (284)
51 PF13847 Methyltransf_31: Meth 99.3 1.4E-11 3E-16 109.0 11.1 122 240-396 2-124 (152)
52 PRK04266 fibrillarin; Provisio 99.3 4.1E-11 9E-16 112.9 14.8 91 229-322 58-150 (226)
53 PRK13944 protein-L-isoaspartat 99.3 4.9E-11 1.1E-15 111.1 14.6 90 230-322 61-151 (205)
54 TIGR03534 RF_mod_PrmC protein- 99.3 1.7E-10 3.6E-15 110.4 18.1 150 241-412 87-241 (251)
55 PRK00121 trmB tRNA (guanine-N( 99.3 1.7E-11 3.7E-16 113.8 10.6 136 241-408 40-177 (202)
56 COG1041 Predicted DNA modifica 99.3 2.5E-11 5.4E-16 118.7 11.3 153 228-420 184-338 (347)
57 PRK11805 N5-glutamine S-adenos 99.3 8.9E-11 1.9E-15 115.8 15.3 126 242-380 134-262 (307)
58 PRK09328 N5-glutamine S-adenos 99.3 2E-10 4.3E-15 111.6 17.2 156 238-415 105-265 (275)
59 PRK05031 tRNA (uracil-5-)-meth 99.3 2.2E-11 4.8E-16 122.9 10.8 82 242-326 207-301 (362)
60 TIGR02143 trmA_only tRNA (urac 99.3 3E-11 6.4E-16 121.5 11.5 82 242-326 198-292 (353)
61 PF01135 PCMT: Protein-L-isoas 99.3 2.7E-11 6E-16 112.6 10.4 101 221-324 52-152 (209)
62 TIGR02752 MenG_heptapren 2-hep 99.2 1.4E-10 3E-15 109.8 14.8 87 231-320 35-121 (231)
63 TIGR02469 CbiT precorrin-6Y C5 99.2 2.2E-10 4.8E-15 96.9 14.4 111 233-381 11-122 (124)
64 TIGR00536 hemK_fam HemK family 99.2 1.8E-10 4E-15 112.6 15.7 154 242-416 115-273 (284)
65 COG2518 Pcm Protein-L-isoaspar 99.2 8.8E-11 1.9E-15 107.5 12.2 98 220-323 51-148 (209)
66 PRK14966 unknown domain/N5-glu 99.2 1.5E-10 3.4E-15 116.8 14.9 172 223-417 232-410 (423)
67 PRK10909 rsmD 16S rRNA m(2)G96 99.2 9.9E-11 2.1E-15 108.1 12.1 80 240-323 52-131 (199)
68 PRK00107 gidB 16S rRNA methylt 99.2 2E-10 4.3E-15 105.1 13.8 103 241-384 45-148 (187)
69 PRK04338 N(2),N(2)-dimethylgua 99.2 7.2E-11 1.6E-15 119.5 11.7 114 230-383 45-159 (382)
70 PRK00312 pcm protein-L-isoaspa 99.2 2.7E-10 5.9E-15 106.5 14.8 97 221-323 58-154 (212)
71 PRK13943 protein-L-isoaspartat 99.2 3.8E-10 8.2E-15 111.6 15.4 88 232-322 71-158 (322)
72 PRK14968 putative methyltransf 99.2 3.7E-10 8.1E-15 103.0 13.9 155 230-408 12-169 (188)
73 TIGR00091 tRNA (guanine-N(7)-) 99.2 9.2E-11 2E-15 108.2 9.8 117 240-381 15-132 (194)
74 PLN02233 ubiquinone biosynthes 99.2 4.2E-10 9.1E-15 108.7 14.6 117 232-383 64-184 (261)
75 PF01170 UPF0020: Putative RNA 99.2 3.7E-10 8E-15 102.8 13.2 132 224-383 11-151 (179)
76 KOG1540 Ubiquinone biosynthesi 99.2 3.7E-10 8E-15 105.0 12.9 129 232-398 91-228 (296)
77 PRK15001 SAM-dependent 23S rib 99.2 5.6E-10 1.2E-14 112.5 15.3 123 227-381 214-340 (378)
78 KOG2915 tRNA(1-methyladenosine 99.2 2.8E-10 6.1E-15 106.6 12.0 142 229-415 93-238 (314)
79 PRK11873 arsM arsenite S-adeno 99.2 6.8E-10 1.5E-14 107.8 15.0 111 236-381 72-183 (272)
80 TIGR00438 rrmJ cell division p 99.1 7.6E-10 1.6E-14 101.5 13.9 113 236-380 27-145 (188)
81 PRK09489 rsmC 16S ribosomal RN 99.1 5.4E-10 1.2E-14 111.7 13.8 129 227-389 182-311 (342)
82 COG2813 RsmC 16S RNA G1207 met 99.1 7.7E-10 1.7E-14 106.5 13.8 91 227-323 144-234 (300)
83 TIGR00308 TRM1 tRNA(guanine-26 99.1 2E-10 4.4E-15 115.7 10.1 103 243-383 46-148 (374)
84 cd00447 NusB_Sun RNA binding d 99.1 4.6E-10 1E-14 96.5 10.8 112 34-149 2-124 (129)
85 PLN02476 O-methyltransferase 99.1 4.9E-10 1.1E-14 108.1 11.8 100 223-322 100-203 (278)
86 PF09445 Methyltransf_15: RNA 99.1 1.3E-10 2.7E-15 103.2 5.9 84 243-329 1-85 (163)
87 PLN02781 Probable caffeoyl-CoA 99.1 9.9E-10 2.1E-14 104.3 12.0 95 228-322 55-153 (234)
88 PLN02244 tocopherol O-methyltr 99.1 2.1E-09 4.5E-14 107.8 14.1 75 240-319 117-192 (340)
89 PRK11188 rrmJ 23S rRNA methylt 99.0 2.8E-09 6E-14 99.5 13.1 139 239-417 49-194 (209)
90 PRK14121 tRNA (guanine-N(7)-)- 99.0 1.7E-09 3.6E-14 108.7 12.4 122 235-384 116-238 (390)
91 PRK01544 bifunctional N5-gluta 99.0 2.7E-09 5.8E-14 112.2 14.5 154 241-416 138-297 (506)
92 PF02475 Met_10: Met-10+ like- 99.0 5.1E-10 1.1E-14 103.1 7.9 81 239-324 99-180 (200)
93 COG4122 Predicted O-methyltran 99.0 2.6E-09 5.7E-14 99.2 11.7 95 227-322 45-141 (219)
94 KOG2187 tRNA uracil-5-methyltr 99.0 8E-10 1.7E-14 112.1 8.7 118 233-387 375-495 (534)
95 PRK00050 16S rRNA m(4)C1402 me 99.0 7.6E-10 1.7E-14 107.8 7.7 94 233-328 11-105 (296)
96 PRK11207 tellurite resistance 99.0 3.8E-09 8.3E-14 97.7 12.0 84 229-319 18-101 (197)
97 COG2890 HemK Methylase of poly 99.0 9.1E-09 2E-13 100.2 15.0 157 221-397 88-250 (280)
98 PHA03411 putative methyltransf 99.0 1.6E-08 3.4E-13 96.9 16.0 156 238-430 61-239 (279)
99 PHA03412 putative methyltransf 99.0 3.7E-09 8E-14 99.0 10.1 172 223-430 34-227 (241)
100 TIGR00477 tehB tellurite resis 98.9 8.1E-09 1.8E-13 95.3 12.0 85 230-322 19-103 (195)
101 COG0742 N6-adenine-specific me 98.9 2.7E-09 5.9E-14 96.3 8.3 82 240-323 42-124 (187)
102 PF03602 Cons_hypoth95: Conser 98.9 8.6E-10 1.9E-14 100.6 5.0 81 241-323 42-124 (183)
103 COG2520 Predicted methyltransf 98.9 5.2E-09 1.1E-13 103.3 10.6 79 240-323 187-266 (341)
104 PRK09634 nusB transcription an 98.9 7E-09 1.5E-13 95.3 10.4 107 37-149 82-197 (207)
105 smart00650 rADc Ribosomal RNA 98.9 6.4E-09 1.4E-13 93.7 10.0 84 232-323 4-87 (169)
106 TIGR00095 RNA methyltransferas 98.9 2.8E-09 6E-14 97.9 7.6 82 241-324 49-132 (189)
107 COG0781 NusB Transcription ter 98.9 8.3E-09 1.8E-13 90.5 10.1 102 32-136 11-124 (151)
108 PRK01683 trans-aconitate 2-met 98.9 3.5E-08 7.6E-13 95.0 15.2 89 224-322 14-102 (258)
109 PRK10258 biotin biosynthesis p 98.9 1E-08 2.2E-13 98.4 11.0 115 224-381 25-140 (251)
110 PRK08317 hypothetical protein; 98.9 4.5E-08 9.7E-13 92.3 15.1 115 233-383 11-126 (241)
111 PRK15451 tRNA cmo(5)U34 methyl 98.9 2.6E-08 5.6E-13 95.4 12.9 108 240-382 55-165 (247)
112 PRK00517 prmA ribosomal protei 98.9 5.7E-08 1.2E-12 93.3 14.9 117 239-409 117-235 (250)
113 TIGR00452 methyltransferase, p 98.9 1.2E-07 2.7E-12 93.5 17.4 116 235-388 115-232 (314)
114 PF01596 Methyltransf_3: O-met 98.8 1.9E-09 4.1E-14 100.0 4.1 93 230-322 34-130 (205)
115 PRK15068 tRNA mo(5)U34 methylt 98.8 2.1E-07 4.6E-12 92.5 19.0 113 232-382 113-227 (322)
116 PRK14103 trans-aconitate 2-met 98.8 1.9E-08 4.2E-13 96.7 11.2 80 231-322 19-98 (255)
117 TIGR00406 prmA ribosomal prote 98.8 7E-08 1.5E-12 94.6 15.2 131 230-409 146-280 (288)
118 COG2227 UbiG 2-polyprenyl-3-me 98.8 6.7E-09 1.4E-13 96.6 7.4 105 240-383 58-163 (243)
119 PRK11036 putative S-adenosyl-L 98.8 1.8E-08 3.9E-13 97.0 10.5 76 240-320 43-119 (255)
120 PTZ00098 phosphoethanolamine N 98.8 4.5E-08 9.8E-13 94.6 13.3 95 218-319 28-123 (263)
121 PRK00216 ubiE ubiquinone/menaq 98.8 1.1E-07 2.4E-12 89.9 15.6 86 231-319 41-127 (239)
122 PTZ00338 dimethyladenosine tra 98.8 2.2E-08 4.8E-13 98.0 10.9 97 223-327 18-115 (294)
123 COG2264 PrmA Ribosomal protein 98.8 6E-08 1.3E-12 94.0 13.7 135 229-410 148-286 (300)
124 PLN02396 hexaprenyldihydroxybe 98.8 2.1E-08 4.6E-13 99.3 10.5 76 238-319 128-204 (322)
125 PF02353 CMAS: Mycolic acid cy 98.8 1.4E-08 3E-13 98.5 9.0 88 224-319 45-133 (273)
126 PF01269 Fibrillarin: Fibrilla 98.8 6.1E-08 1.3E-12 89.3 12.1 143 230-409 56-209 (229)
127 PLN03075 nicotianamine synthas 98.8 6.9E-08 1.5E-12 93.8 12.7 107 241-381 123-233 (296)
128 PLN02589 caffeoyl-CoA O-methyl 98.8 3.9E-08 8.6E-13 93.7 10.3 96 227-322 65-165 (247)
129 COG2230 Cfa Cyclopropane fatty 98.8 4E-08 8.6E-13 94.5 10.3 121 225-383 56-178 (283)
130 PLN02672 methionine S-methyltr 98.8 1.3E-07 2.8E-12 106.0 15.2 169 222-398 95-292 (1082)
131 PLN02336 phosphoethanolamine N 98.7 1.4E-07 3E-12 99.0 14.8 113 232-382 257-370 (475)
132 PRK14896 ksgA 16S ribosomal RN 98.7 6E-08 1.3E-12 93.5 10.7 93 223-325 11-103 (258)
133 PRK00274 ksgA 16S ribosomal RN 98.7 4.7E-08 1E-12 95.0 9.8 95 223-326 24-118 (272)
134 PRK10742 putative methyltransf 98.7 1.2E-07 2.7E-12 89.3 12.2 90 230-324 75-175 (250)
135 KOG3420 Predicted RNA methylas 98.7 6.4E-09 1.4E-13 88.7 3.1 83 239-330 46-128 (185)
136 PF13649 Methyltransf_25: Meth 98.7 2.1E-08 4.6E-13 82.2 5.9 71 245-319 1-73 (101)
137 cd02440 AdoMet_MTases S-adenos 98.7 9.5E-08 2.1E-12 76.6 9.6 102 244-380 1-103 (107)
138 PRK12335 tellurite resistance 98.7 1.8E-07 4E-12 91.6 13.2 78 236-321 115-192 (287)
139 TIGR00740 methyltransferase, p 98.7 2.3E-07 5.1E-12 88.3 12.7 75 240-319 52-128 (239)
140 KOG2904 Predicted methyltransf 98.7 2E-07 4.4E-12 87.7 11.8 143 241-398 148-300 (328)
141 TIGR01934 MenG_MenH_UbiE ubiqu 98.7 5.4E-07 1.2E-11 84.2 14.8 83 232-319 30-112 (223)
142 PF08241 Methyltransf_11: Meth 98.7 3.3E-08 7.2E-13 79.1 5.7 66 246-319 1-66 (95)
143 PRK11705 cyclopropane fatty ac 98.7 1.9E-07 4E-12 95.1 12.2 84 225-319 151-234 (383)
144 PRK04457 spermidine synthase; 98.7 2.3E-07 5E-12 89.6 12.0 114 239-383 64-179 (262)
145 PF02384 N6_Mtase: N-6 DNA Met 98.7 1.2E-07 2.7E-12 93.8 10.3 107 220-327 25-139 (311)
146 PF03848 TehB: Tellurite resis 98.6 2.5E-07 5.5E-12 84.5 11.3 89 222-319 12-100 (192)
147 COG0293 FtsJ 23S rRNA methylas 98.6 2E-07 4.3E-12 85.5 10.4 154 229-421 29-192 (205)
148 TIGR02072 BioC biotin biosynth 98.6 1.9E-07 4.1E-12 88.2 10.6 91 224-322 14-107 (240)
149 TIGR02021 BchM-ChlM magnesium 98.6 9.4E-07 2E-11 83.0 14.4 72 239-319 53-125 (219)
150 KOG1271 Methyltransferases [Ge 98.6 5.5E-07 1.2E-11 80.0 11.3 135 243-412 69-205 (227)
151 PLN02490 MPBQ/MSBQ methyltrans 98.6 5.7E-07 1.2E-11 89.6 12.8 73 240-319 112-184 (340)
152 PRK06922 hypothetical protein; 98.6 7.4E-07 1.6E-11 94.5 14.1 86 234-322 411-496 (677)
153 smart00828 PKS_MT Methyltransf 98.6 5.6E-07 1.2E-11 84.7 11.5 72 243-319 1-73 (224)
154 PRK00811 spermidine synthase; 98.6 1E-06 2.2E-11 86.1 13.4 80 240-322 75-159 (283)
155 COG1889 NOP1 Fibrillarin-like 98.5 1.4E-06 3.1E-11 78.7 12.8 149 223-409 51-211 (231)
156 TIGR00006 S-adenosyl-methyltra 98.5 2.5E-07 5.3E-12 90.4 8.6 94 233-328 12-107 (305)
157 COG0116 Predicted N6-adenine-s 98.5 1.4E-06 3.1E-11 86.7 13.8 141 215-382 159-345 (381)
158 PF05401 NodS: Nodulation prot 98.5 2.8E-07 6.1E-12 83.6 8.0 90 226-328 28-117 (201)
159 PF06325 PrmA: Ribosomal prote 98.5 4.4E-07 9.5E-12 88.7 9.9 84 229-320 147-232 (295)
160 TIGR02716 C20_methyl_CrtF C-20 98.5 2.1E-06 4.5E-11 84.9 14.8 123 230-389 138-262 (306)
161 PRK05134 bifunctional 3-demeth 98.5 1.4E-06 3.1E-11 82.4 13.0 116 231-384 38-154 (233)
162 KOG1663 O-methyltransferase [S 98.5 1.1E-06 2.4E-11 81.2 11.4 122 224-380 56-182 (237)
163 COG0220 Predicted S-adenosylme 98.5 2.8E-07 6E-12 86.7 7.5 115 243-382 50-165 (227)
164 TIGR03587 Pse_Me-ase pseudamin 98.5 6.4E-07 1.4E-11 83.3 9.8 72 238-319 40-111 (204)
165 PLN02336 phosphoethanolamine N 98.5 1E-06 2.3E-11 92.4 12.3 93 225-323 21-113 (475)
166 PRK03612 spermidine synthase; 98.5 6.2E-07 1.3E-11 94.9 10.5 135 240-406 296-438 (521)
167 TIGR01983 UbiG ubiquinone bios 98.5 1.3E-06 2.8E-11 82.1 11.3 107 240-383 44-151 (224)
168 PRK11727 23S rRNA mA1618 methy 98.5 8.8E-07 1.9E-11 87.5 10.0 87 241-328 114-204 (321)
169 PRK01581 speE spermidine synth 98.4 1.1E-06 2.3E-11 87.6 10.5 125 241-397 150-282 (374)
170 TIGR03438 probable methyltrans 98.4 3.8E-06 8.1E-11 82.9 14.3 65 240-304 62-127 (301)
171 PF08242 Methyltransf_12: Meth 98.4 1E-07 2.3E-12 77.6 2.6 72 246-319 1-72 (99)
172 TIGR00417 speE spermidine synt 98.4 1.3E-06 2.9E-11 84.8 10.4 123 241-396 72-199 (270)
173 TIGR00755 ksgA dimethyladenosi 98.4 1.3E-06 2.7E-11 84.1 10.1 86 228-323 16-104 (253)
174 PF02390 Methyltransf_4: Putat 98.4 2.8E-07 6E-12 85.1 4.7 137 242-409 18-157 (195)
175 PRK06202 hypothetical protein; 98.4 1.2E-06 2.6E-11 83.0 9.1 78 236-319 55-135 (232)
176 KOG1270 Methyltransferases [Co 98.4 1.3E-06 2.7E-11 82.2 8.9 104 238-382 86-196 (282)
177 COG0030 KsgA Dimethyladenosine 98.4 3.1E-06 6.6E-11 80.7 10.8 91 230-327 19-109 (259)
178 PRK05785 hypothetical protein; 98.4 1.3E-06 2.8E-11 82.6 8.3 66 241-319 51-116 (226)
179 PLN02585 magnesium protoporphy 98.4 2.1E-06 4.5E-11 85.0 9.9 70 241-319 144-218 (315)
180 TIGR03840 TMPT_Se_Te thiopurin 98.4 3.9E-06 8.4E-11 78.6 11.2 75 240-319 33-119 (213)
181 COG2521 Predicted archaeal met 98.3 4.5E-07 9.7E-12 83.6 4.5 147 234-412 127-277 (287)
182 PRK07580 Mg-protoporphyrin IX 98.3 3.6E-06 7.9E-11 79.3 10.2 71 240-319 62-133 (230)
183 PRK11783 rlmL 23S rRNA m(2)G24 98.3 1.2E-05 2.7E-10 88.1 15.5 109 214-323 156-313 (702)
184 KOG1596 Fibrillarin and relate 98.3 2.8E-06 6E-11 78.6 8.4 135 230-401 139-284 (317)
185 COG4106 Tam Trans-aconitate me 98.3 1.2E-06 2.7E-11 79.9 5.9 85 227-322 17-101 (257)
186 COG4076 Predicted RNA methylas 98.3 1E-06 2.3E-11 78.5 5.3 70 242-319 33-102 (252)
187 PRK11088 rrmA 23S rRNA methylt 98.3 4.2E-06 9E-11 81.4 9.9 72 240-319 84-157 (272)
188 KOG3191 Predicted N6-DNA-methy 98.3 4.3E-06 9.4E-11 74.4 8.9 79 241-324 43-121 (209)
189 smart00138 MeTrc Methyltransfe 98.3 5.9E-06 1.3E-10 80.0 10.6 108 240-380 98-241 (264)
190 KOG2730 Methylase [General fun 98.3 3.9E-07 8.4E-12 83.2 2.0 87 241-330 94-182 (263)
191 PF01728 FtsJ: FtsJ-like methy 98.2 8.3E-07 1.8E-11 80.8 3.8 74 241-325 23-105 (181)
192 PF01861 DUF43: Protein of unk 98.2 5.5E-06 1.2E-10 77.6 9.0 159 216-414 18-180 (243)
193 PF08003 Methyltransf_9: Prote 98.2 1.8E-05 3.8E-10 76.6 12.5 116 236-389 110-227 (315)
194 KOG1541 Predicted protein carb 98.2 1E-05 2.3E-10 74.1 10.3 149 222-405 29-180 (270)
195 KOG1661 Protein-L-isoaspartate 98.2 7.1E-06 1.5E-10 74.7 9.1 86 234-322 73-171 (237)
196 KOG4589 Cell division protein 98.2 2E-05 4.2E-10 70.5 11.7 154 240-433 68-230 (232)
197 PF01795 Methyltransf_5: MraW 98.2 7E-07 1.5E-11 87.2 2.2 94 233-328 12-108 (310)
198 PLN02366 spermidine synthase 98.2 2E-05 4.4E-10 77.7 12.2 82 240-323 90-175 (308)
199 PRK13255 thiopurine S-methyltr 98.2 4.1E-05 8.9E-10 71.9 13.4 73 238-318 34-121 (218)
200 KOG2671 Putative RNA methylase 98.1 5.1E-06 1.1E-10 80.7 7.4 185 229-425 196-396 (421)
201 TIGR02987 met_A_Alw26 type II 98.1 2.4E-05 5.3E-10 83.1 13.3 86 242-327 32-126 (524)
202 PF13489 Methyltransf_23: Meth 98.1 8.5E-06 1.8E-10 71.8 8.1 108 228-383 8-117 (161)
203 COG0275 Predicted S-adenosylme 98.1 1E-05 2.3E-10 77.8 8.6 94 233-327 15-110 (314)
204 PF02005 TRM: N2,N2-dimethylgu 98.0 5.9E-06 1.3E-10 83.7 4.4 104 242-383 50-155 (377)
205 COG0286 HsdM Type I restrictio 98.0 0.00034 7.3E-09 73.6 17.6 109 221-329 166-280 (489)
206 PLN02823 spermine synthase 98.0 8.7E-05 1.9E-09 74.0 12.3 78 242-322 104-185 (336)
207 KOG0820 Ribosomal RNA adenine 98.0 4E-05 8.6E-10 72.5 9.1 85 233-325 50-135 (315)
208 PF07021 MetW: Methionine bios 97.9 2.2E-05 4.8E-10 71.2 6.7 71 239-319 11-81 (193)
209 PRK01544 bifunctional N5-gluta 97.9 2.2E-05 4.8E-10 82.8 7.7 81 240-322 346-426 (506)
210 PF00398 RrnaAD: Ribosomal RNA 97.8 7.4E-05 1.6E-09 72.2 8.8 90 229-323 18-107 (262)
211 PRK13256 thiopurine S-methyltr 97.8 0.00017 3.8E-09 67.8 10.8 78 239-319 41-130 (226)
212 cd00315 Cyt_C5_DNA_methylase C 97.8 3.6E-05 7.7E-10 75.0 6.4 79 244-331 2-80 (275)
213 TIGR02081 metW methionine bios 97.8 8.4E-05 1.8E-09 68.4 8.3 72 240-322 12-84 (194)
214 TIGR00478 tly hemolysin TlyA f 97.8 3.2E-05 7E-10 72.9 5.1 40 240-281 74-113 (228)
215 PF02527 GidB: rRNA small subu 97.7 0.00015 3.3E-09 66.2 8.8 71 244-319 51-121 (184)
216 PF01564 Spermine_synth: Sperm 97.7 0.00012 2.6E-09 70.1 8.4 86 234-323 70-160 (246)
217 PRK11760 putative 23S rRNA C24 97.7 0.00012 2.6E-09 72.3 8.0 73 239-324 209-281 (357)
218 COG3963 Phospholipid N-methylt 97.7 0.00024 5.1E-09 62.7 8.9 88 230-322 37-126 (194)
219 KOG1500 Protein arginine N-met 97.7 0.00015 3.3E-09 70.3 8.2 75 241-322 177-252 (517)
220 TIGR01444 fkbM_fam methyltrans 97.7 0.00015 3.4E-09 62.9 7.6 59 244-303 1-59 (143)
221 PF05185 PRMT5: PRMT5 arginine 97.6 0.00016 3.4E-09 75.0 8.6 77 242-322 187-267 (448)
222 PRK04148 hypothetical protein; 97.6 0.00034 7.3E-09 60.2 8.8 75 233-319 8-83 (134)
223 COG0357 GidB Predicted S-adeno 97.6 0.00027 5.9E-09 65.7 8.6 74 242-319 68-141 (215)
224 PF12147 Methyltransf_20: Puta 97.6 0.0015 3.3E-08 62.8 13.5 147 221-398 115-264 (311)
225 PF08123 DOT1: Histone methyla 97.5 0.0003 6.5E-09 65.3 8.1 91 233-324 34-133 (205)
226 COG1867 TRM1 N2,N2-dimethylgua 97.5 0.00027 5.8E-09 69.9 7.3 78 242-322 53-130 (380)
227 PF05724 TPMT: Thiopurine S-me 97.5 0.00032 7E-09 65.8 7.6 85 237-329 33-129 (218)
228 PF04445 SAM_MT: Putative SAM- 97.5 0.00041 8.8E-09 65.3 7.8 88 230-322 62-160 (234)
229 KOG1499 Protein arginine N-met 97.4 0.00045 9.9E-09 67.9 8.1 73 240-318 59-132 (346)
230 KOG4300 Predicted methyltransf 97.4 0.00085 1.8E-08 61.3 8.4 123 236-398 71-196 (252)
231 COG3897 Predicted methyltransf 97.3 0.00042 9.2E-09 62.7 5.8 70 241-319 79-148 (218)
232 PF13578 Methyltransf_24: Meth 97.3 2.4E-05 5.2E-10 64.6 -2.1 78 246-325 1-81 (106)
233 PF05219 DREV: DREV methyltran 97.3 0.0012 2.7E-08 62.6 9.1 63 241-318 94-156 (265)
234 KOG1253 tRNA methyltransferase 97.3 0.00014 3E-09 74.2 2.6 108 240-383 108-217 (525)
235 KOG2782 Putative SAM dependent 97.2 0.00017 3.8E-09 65.9 2.3 95 233-328 35-133 (303)
236 PF06962 rRNA_methylase: Putat 97.2 0.00083 1.8E-08 58.1 6.3 118 268-409 1-122 (140)
237 COG0421 SpeE Spermidine syntha 97.2 0.0031 6.8E-08 61.4 10.6 124 230-385 66-194 (282)
238 PF00145 DNA_methylase: C-5 cy 97.1 0.00048 1E-08 68.2 4.3 77 244-331 2-79 (335)
239 COG4262 Predicted spermidine s 97.1 0.0067 1.4E-07 59.9 11.9 81 240-323 288-375 (508)
240 PF10294 Methyltransf_16: Puta 97.1 0.0011 2.3E-08 60.0 5.8 78 240-319 44-125 (173)
241 COG4976 Predicted methyltransf 97.0 0.00062 1.3E-08 63.1 3.7 107 239-387 123-231 (287)
242 PF13679 Methyltransf_32: Meth 97.0 0.011 2.3E-07 51.6 11.3 64 240-303 24-93 (141)
243 PF00891 Methyltransf_2: O-met 96.9 0.012 2.5E-07 56.0 11.7 114 232-389 91-207 (241)
244 PF04816 DUF633: Family of unk 96.9 0.004 8.6E-08 57.9 8.0 119 245-409 1-121 (205)
245 PHA01634 hypothetical protein 96.9 0.006 1.3E-07 51.4 8.1 75 241-325 28-102 (156)
246 PF05971 Methyltransf_10: Prot 96.9 0.0074 1.6E-07 59.0 10.1 152 242-400 103-273 (299)
247 KOG1098 Putative SAM-dependent 96.8 0.0018 4E-08 67.6 5.5 108 239-378 42-155 (780)
248 TIGR00675 dcm DNA-methyltransf 96.7 0.0019 4.1E-08 64.2 5.0 77 245-331 1-77 (315)
249 KOG3010 Methyltransferase [Gen 96.6 0.0026 5.6E-08 59.5 4.7 84 230-319 21-106 (261)
250 PLN02232 ubiquinone biosynthes 96.6 0.0073 1.6E-07 53.8 7.5 47 270-319 1-50 (160)
251 KOG2899 Predicted methyltransf 96.6 0.0031 6.8E-08 59.0 5.1 47 241-288 58-104 (288)
252 PF11599 AviRa: RRNA methyltra 96.4 0.0061 1.3E-07 56.1 5.8 59 229-287 36-98 (246)
253 COG0270 Dcm Site-specific DNA 96.4 0.0056 1.2E-07 61.2 6.3 83 243-332 4-86 (328)
254 KOG1099 SAM-dependent methyltr 96.4 0.012 2.7E-07 54.5 7.6 113 243-394 43-173 (294)
255 COG1568 Predicted methyltransf 96.4 0.011 2.4E-07 56.3 7.5 83 241-326 152-234 (354)
256 KOG1227 Putative methyltransfe 96.3 0.0021 4.6E-08 61.8 2.2 74 241-320 194-269 (351)
257 KOG3115 Methyltransferase-like 96.3 0.017 3.7E-07 52.7 7.7 66 241-307 60-132 (249)
258 PRK10458 DNA cytosine methylas 96.2 0.018 4E-07 60.0 8.5 85 242-330 88-186 (467)
259 TIGR03439 methyl_EasF probable 96.1 0.017 3.7E-07 57.3 7.7 65 240-304 75-144 (319)
260 PF03291 Pox_MCEL: mRNA cappin 96.1 0.017 3.6E-07 57.8 7.3 123 230-382 47-187 (331)
261 KOG1975 mRNA cap methyltransfe 96.0 0.035 7.6E-07 54.2 8.7 132 230-399 108-249 (389)
262 PF05148 Methyltransf_8: Hypot 96.0 0.023 5.1E-07 52.4 7.2 117 233-409 63-182 (219)
263 KOG2361 Predicted methyltransf 96.0 0.016 3.5E-07 54.3 6.2 59 244-303 74-133 (264)
264 PF06080 DUF938: Protein of un 96.0 0.041 8.9E-07 50.8 8.7 77 241-318 25-107 (204)
265 PRK00536 speE spermidine synth 95.8 0.11 2.5E-06 50.0 11.3 72 241-321 72-147 (262)
266 TIGR00497 hsdM type I restrict 95.7 0.052 1.1E-06 57.5 9.4 105 220-325 194-305 (501)
267 COG1189 Predicted rRNA methyla 95.6 0.024 5.1E-07 53.2 5.7 78 240-325 78-156 (245)
268 PF03059 NAS: Nicotianamine sy 95.6 0.059 1.3E-06 52.2 8.5 77 243-322 122-201 (276)
269 KOG2078 tRNA modification enzy 95.4 0.0067 1.4E-07 61.1 1.6 64 239-305 247-312 (495)
270 KOG0024 Sorbitol dehydrogenase 95.3 0.12 2.6E-06 50.7 9.5 103 217-328 145-254 (354)
271 PF04989 CmcI: Cephalosporin h 95.3 0.041 9E-07 50.8 6.1 106 221-327 11-125 (206)
272 PF09243 Rsm22: Mitochondrial 95.0 0.068 1.5E-06 52.0 7.3 48 242-289 34-81 (274)
273 PRK10611 chemotaxis methyltran 95.0 0.073 1.6E-06 52.0 7.3 43 243-285 117-166 (287)
274 PF10354 DUF2431: Domain of un 95.0 0.62 1.4E-05 41.7 12.7 137 251-410 6-150 (166)
275 COG2384 Predicted SAM-dependen 94.8 0.11 2.5E-06 48.2 7.5 116 240-398 15-132 (226)
276 PF07091 FmrO: Ribosomal RNA m 94.8 0.11 2.4E-06 49.3 7.6 73 241-319 105-177 (251)
277 PF05891 Methyltransf_PK: AdoM 94.3 0.1 2.2E-06 48.5 6.1 74 241-319 55-128 (218)
278 COG0500 SmtA SAM-dependent met 94.3 0.94 2E-05 37.7 11.8 70 245-317 52-123 (257)
279 PRK11524 putative methyltransf 94.2 0.095 2.1E-06 51.2 6.1 46 240-288 207-252 (284)
280 COG1064 AdhP Zn-dependent alco 94.2 0.2 4.4E-06 49.9 8.3 76 237-322 162-238 (339)
281 KOG1709 Guanidinoacetate methy 94.0 0.62 1.3E-05 43.2 10.2 79 240-322 100-178 (271)
282 PF01555 N6_N4_Mtase: DNA meth 93.8 0.11 2.5E-06 48.1 5.5 42 240-284 190-231 (231)
283 KOG1501 Arginine N-methyltrans 93.6 0.14 3E-06 52.0 5.9 57 244-302 69-126 (636)
284 PF07279 DUF1442: Protein of u 93.4 0.41 9E-06 44.4 8.2 93 226-321 26-123 (218)
285 PRK01747 mnmC bifunctional tRN 93.4 0.34 7.3E-06 53.2 9.1 126 241-409 57-224 (662)
286 COG1352 CheR Methylase of chem 93.3 0.53 1.1E-05 45.5 9.3 43 242-284 97-147 (268)
287 PRK13699 putative methylase; P 93.1 0.23 4.9E-06 47.0 6.3 49 239-290 161-209 (227)
288 COG2933 Predicted SAM-dependen 92.2 0.36 7.9E-06 46.0 6.2 71 239-322 209-279 (358)
289 KOG3045 Predicted RNA methylas 91.7 0.41 8.9E-06 45.6 6.0 115 233-408 171-287 (325)
290 COG1063 Tdh Threonine dehydrog 91.6 0.81 1.8E-05 46.1 8.6 48 237-285 164-212 (350)
291 PLN03209 translocon at the inn 91.3 2.1 4.6E-05 45.9 11.5 83 237-320 75-166 (576)
292 PF10237 N6-adenineMlase: Prob 91.1 3.6 7.8E-05 36.7 11.1 80 230-323 13-96 (162)
293 PF03141 Methyltransf_29: Puta 89.8 0.34 7.4E-06 50.3 4.0 135 201-385 82-223 (506)
294 PLN02989 cinnamyl-alcohol dehy 89.6 3.8 8.1E-05 40.3 11.3 125 241-383 4-131 (325)
295 PLN02662 cinnamyl-alcohol dehy 89.5 3.3 7.2E-05 40.5 10.7 122 242-382 4-128 (322)
296 PRK08213 gluconate 5-dehydroge 89.2 9.8 0.00021 35.9 13.4 82 241-324 11-100 (259)
297 PLN00198 anthocyanidin reducta 88.2 4.4 9.4E-05 40.2 10.7 125 237-383 4-133 (338)
298 TIGR01963 PHB_DH 3-hydroxybuty 88.1 4 8.6E-05 38.3 9.9 79 244-324 3-89 (255)
299 PF03721 UDPG_MGDP_dh_N: UDP-g 87.8 0.64 1.4E-05 42.4 3.9 135 251-418 7-157 (185)
300 KOG3178 Hydroxyindole-O-methyl 87.5 4.1 8.8E-05 40.6 9.6 105 235-382 167-276 (342)
301 PLN02896 cinnamyl-alcohol dehy 87.0 5.7 0.00012 39.7 10.7 81 242-325 10-91 (353)
302 COG2961 ComJ Protein involved 86.5 1.8 3.9E-05 41.0 6.1 124 241-403 89-213 (279)
303 COG4798 Predicted methyltransf 86.2 0.8 1.7E-05 41.9 3.5 52 226-277 33-84 (238)
304 PF01234 NNMT_PNMT_TEMT: NNMT/ 86.2 2.5 5.3E-05 40.7 7.1 137 240-409 55-236 (256)
305 TIGR03589 PseB UDP-N-acetylglu 86.0 5.7 0.00012 39.3 10.0 118 242-382 4-125 (324)
306 PRK08945 putative oxoacyl-(acy 86.0 6.8 0.00015 36.7 10.2 83 240-323 10-102 (247)
307 PRK12429 3-hydroxybutyrate deh 85.7 3.6 7.9E-05 38.6 8.2 79 242-322 4-90 (258)
308 PLN02650 dihydroflavonol-4-red 85.2 8.6 0.00019 38.3 11.0 120 242-380 5-126 (351)
309 KOG3987 Uncharacterized conser 84.8 0.25 5.4E-06 45.5 -0.4 40 242-284 113-152 (288)
310 PF04672 Methyltransf_19: S-ad 84.7 2.3 5E-05 41.0 6.1 63 243-305 70-134 (267)
311 PLN02986 cinnamyl-alcohol dehy 84.4 11 0.00023 37.1 11.1 80 242-322 5-86 (322)
312 PRK07326 short chain dehydroge 83.9 4.5 9.8E-05 37.5 7.8 77 242-321 6-90 (237)
313 COG3129 Predicted SAM-dependen 83.3 2.7 5.9E-05 39.5 5.7 85 241-326 78-166 (292)
314 PRK08251 short chain dehydroge 83.0 16 0.00035 34.0 11.3 82 242-324 2-92 (248)
315 KOG0022 Alcohol dehydrogenase, 82.9 3 6.5E-05 41.0 6.1 53 232-284 183-235 (375)
316 PRK06194 hypothetical protein; 82.8 9 0.0002 36.8 9.7 83 242-326 6-96 (287)
317 PF05050 Methyltransf_21: Meth 82.6 3.5 7.6E-05 35.8 6.2 43 247-289 1-48 (167)
318 PRK07576 short chain dehydroge 82.4 13 0.00029 35.3 10.5 80 241-322 8-95 (264)
319 PRK13394 3-hydroxybutyrate deh 82.1 6.1 0.00013 37.2 8.0 81 242-324 7-95 (262)
320 PRK08063 enoyl-(acyl carrier p 82.1 12 0.00026 34.9 10.0 80 242-323 4-92 (250)
321 PRK08085 gluconate 5-dehydroge 82.0 13 0.00029 34.8 10.4 81 242-324 9-97 (254)
322 COG1062 AdhC Zn-dependent alco 81.9 3.7 8E-05 40.9 6.4 57 232-292 176-232 (366)
323 PRK08339 short chain dehydroge 81.6 18 0.0004 34.3 11.2 80 242-322 8-94 (263)
324 COG0677 WecC UDP-N-acetyl-D-ma 81.4 2.1 4.5E-05 43.4 4.5 116 251-399 16-145 (436)
325 PRK06914 short chain dehydroge 81.0 19 0.00041 34.3 11.2 85 242-327 3-95 (280)
326 PRK12939 short chain dehydroge 80.8 11 0.00025 35.0 9.3 80 241-322 6-93 (250)
327 TIGR02822 adh_fam_2 zinc-bindi 80.4 24 0.00053 34.8 12.0 52 236-293 160-212 (329)
328 KOG4058 Uncharacterized conser 80.2 4.2 9.2E-05 35.6 5.4 73 234-308 65-138 (199)
329 PLN02214 cinnamoyl-CoA reducta 80.0 25 0.00054 35.0 11.9 80 241-322 9-90 (342)
330 PRK06940 short chain dehydroge 79.6 20 0.00044 34.3 10.8 77 244-323 4-86 (275)
331 KOG2940 Predicted methyltransf 79.6 2 4.3E-05 40.3 3.4 80 232-318 62-142 (325)
332 PRK05786 fabG 3-ketoacyl-(acyl 79.2 16 0.00034 33.8 9.7 78 242-322 5-90 (238)
333 PRK09880 L-idonate 5-dehydroge 79.0 20 0.00043 35.6 10.9 49 238-293 166-217 (343)
334 KOG1269 SAM-dependent methyltr 78.9 3.9 8.4E-05 41.4 5.6 83 236-323 105-189 (364)
335 PRK05867 short chain dehydroge 78.6 15 0.00032 34.6 9.4 80 241-322 8-95 (253)
336 PF01739 CheR: CheR methyltran 78.1 3.4 7.4E-05 38.0 4.6 107 241-380 31-174 (196)
337 KOG1331 Predicted methyltransf 77.9 2.6 5.5E-05 40.9 3.8 65 241-319 45-109 (293)
338 PRK11524 putative methyltransf 77.8 3.4 7.3E-05 40.3 4.8 74 293-384 8-82 (284)
339 KOG2651 rRNA adenine N-6-methy 77.8 7.6 0.00016 39.2 7.0 52 230-283 142-193 (476)
340 PRK06196 oxidoreductase; Provi 77.7 22 0.00048 34.8 10.6 77 241-323 25-109 (315)
341 PRK07109 short chain dehydroge 77.5 35 0.00076 33.9 12.1 81 241-323 7-95 (334)
342 PLN02427 UDP-apiose/xylose syn 77.4 13 0.00029 37.6 9.2 78 242-320 14-93 (386)
343 TIGR03206 benzo_BadH 2-hydroxy 77.2 20 0.00044 33.3 9.9 81 242-324 3-91 (250)
344 PRK06197 short chain dehydroge 77.0 38 0.00082 32.9 12.0 81 241-322 15-104 (306)
345 cd08230 glucose_DH Glucose deh 76.8 14 0.00031 36.7 9.2 48 239-292 170-221 (355)
346 KOG4174 Uncharacterized conser 76.4 55 0.0012 31.4 12.0 119 242-379 57-188 (282)
347 PRK07831 short chain dehydroge 76.1 25 0.00055 33.1 10.3 82 241-322 16-106 (262)
348 PRK07231 fabG 3-ketoacyl-(acyl 76.0 20 0.00042 33.4 9.4 80 242-324 5-92 (251)
349 PRK13699 putative methylase; P 75.9 2.1 4.6E-05 40.4 2.7 73 295-385 3-75 (227)
350 PRK07523 gluconate 5-dehydroge 75.6 31 0.00068 32.3 10.7 81 241-323 9-97 (255)
351 cd08283 FDH_like_1 Glutathione 75.2 8.2 0.00018 39.2 7.0 50 235-285 178-228 (386)
352 PRK12937 short chain dehydroge 74.9 18 0.00038 33.6 8.7 79 242-322 5-92 (245)
353 PF04378 RsmJ: Ribosomal RNA s 74.8 3.6 7.7E-05 39.3 3.8 69 248-323 62-135 (245)
354 PRK15182 Vi polysaccharide bio 74.7 28 0.0006 36.1 10.7 115 250-399 12-137 (425)
355 PRK07097 gluconate 5-dehydroge 74.6 38 0.00082 32.0 11.1 82 241-324 9-98 (265)
356 PF02254 TrkA_N: TrkA-N domain 74.3 2.8 6.2E-05 34.4 2.8 66 250-322 4-71 (116)
357 PF11899 DUF3419: Protein of u 74.2 9.5 0.00021 38.9 7.0 64 221-287 14-78 (380)
358 PRK09186 flagellin modificatio 73.9 18 0.00038 33.9 8.5 80 242-322 4-92 (256)
359 PRK07062 short chain dehydroge 73.8 48 0.001 31.2 11.6 81 242-323 8-97 (265)
360 PRK07832 short chain dehydroge 72.7 27 0.00058 33.3 9.5 75 248-322 5-87 (272)
361 PRK09242 tropinone reductase; 72.6 60 0.0013 30.3 11.9 80 242-322 9-97 (257)
362 cd08254 hydroxyacyl_CoA_DH 6-h 72.6 19 0.00041 35.1 8.7 51 237-293 161-212 (338)
363 PRK05653 fabG 3-ketoacyl-(acyl 72.4 36 0.00078 31.3 10.2 79 242-322 5-91 (246)
364 TIGR02622 CDP_4_6_dhtase CDP-g 72.2 23 0.0005 35.2 9.3 78 242-322 4-84 (349)
365 PTZ00357 methyltransferase; Pr 72.2 17 0.00037 39.7 8.3 76 244-319 703-798 (1072)
366 PRK12384 sorbitol-6-phosphate 71.9 32 0.0007 32.2 9.8 80 242-322 2-90 (259)
367 COG0863 DNA modification methy 71.8 10 0.00022 36.8 6.4 49 239-290 220-268 (302)
368 PRK10309 galactitol-1-phosphat 71.5 21 0.00046 35.3 8.9 52 236-292 155-207 (347)
369 PRK06139 short chain dehydroge 71.3 40 0.00088 33.5 10.7 82 241-324 6-95 (330)
370 PRK15181 Vi polysaccharide bio 70.9 23 0.0005 35.3 9.0 81 242-323 15-100 (348)
371 PRK08643 acetoin reductase; Va 70.7 39 0.00085 31.6 10.1 77 243-321 3-87 (256)
372 PRK07666 fabG 3-ketoacyl-(acyl 70.6 33 0.00071 31.7 9.4 80 242-323 7-94 (239)
373 PRK07533 enoyl-(acyl carrier p 70.4 45 0.00098 31.5 10.5 80 241-322 9-97 (258)
374 PRK05565 fabG 3-ketoacyl-(acyl 70.3 25 0.00054 32.5 8.6 81 242-324 5-94 (247)
375 KOG2912 Predicted DNA methylas 70.3 4.8 0.0001 39.6 3.6 80 246-326 107-191 (419)
376 cd05564 PTS_IIB_chitobiose_lic 69.9 6.7 0.00014 31.6 3.9 51 248-321 4-54 (96)
377 KOG0821 Predicted ribosomal RN 69.9 9 0.0002 35.8 5.1 70 233-305 42-111 (326)
378 PLN02583 cinnamoyl-CoA reducta 69.8 48 0.001 32.1 10.8 76 241-318 5-83 (297)
379 TIGR00853 pts-lac PTS system, 69.3 7.5 0.00016 31.3 4.0 55 244-322 5-59 (95)
380 TIGR02415 23BDH acetoin reduct 69.1 77 0.0017 29.4 11.8 78 249-327 6-91 (254)
381 PRK05717 oxidoreductase; Valid 68.8 30 0.00065 32.4 8.9 78 242-324 10-95 (255)
382 PRK07677 short chain dehydroge 68.7 52 0.0011 30.7 10.5 79 243-323 2-88 (252)
383 PRK08415 enoyl-(acyl carrier p 68.0 52 0.0011 31.6 10.5 79 242-322 5-92 (274)
384 PRK06500 short chain dehydroge 67.7 42 0.00092 31.0 9.6 77 242-323 6-90 (249)
385 PRK12826 3-ketoacyl-(acyl-carr 67.6 63 0.0014 29.8 10.7 81 242-324 6-94 (251)
386 KOG0919 C-5 cytosine-specific 67.6 5.5 0.00012 37.7 3.2 88 243-335 4-91 (338)
387 PRK07067 sorbitol dehydrogenas 67.4 39 0.00085 31.7 9.3 77 242-323 6-90 (257)
388 KOG0822 Protein kinase inhibit 67.3 12 0.00025 39.5 5.8 72 244-319 370-445 (649)
389 PRK05650 short chain dehydroge 67.1 20 0.00043 34.1 7.3 77 244-322 2-86 (270)
390 PRK06180 short chain dehydroge 67.0 29 0.00063 33.1 8.4 77 242-323 4-88 (277)
391 PRK08594 enoyl-(acyl carrier p 67.0 62 0.0014 30.6 10.7 82 241-322 6-96 (257)
392 PRK11908 NAD-dependent epimera 66.5 50 0.0011 32.7 10.3 73 244-323 3-78 (347)
393 KOG1562 Spermidine synthase [A 66.5 23 0.0005 34.7 7.3 81 240-322 120-204 (337)
394 PRK08217 fabG 3-ketoacyl-(acyl 66.5 73 0.0016 29.4 11.0 80 241-322 4-91 (253)
395 KOG2793 Putative N2,N2-dimethy 66.5 24 0.00053 33.7 7.5 56 230-288 74-130 (248)
396 PRK07063 short chain dehydroge 66.4 61 0.0013 30.4 10.5 80 242-322 7-95 (260)
397 PRK07904 short chain dehydroge 66.0 22 0.00048 33.6 7.3 79 241-320 7-94 (253)
398 PRK06124 gluconate 5-dehydroge 65.9 72 0.0016 29.7 10.9 80 241-322 10-97 (256)
399 PF05206 TRM13: Methyltransfer 65.0 19 0.00042 34.6 6.6 66 240-306 17-87 (259)
400 cd05565 PTS_IIB_lactose PTS_II 64.7 10 0.00022 30.9 4.0 54 245-322 3-56 (99)
401 PRK08267 short chain dehydroge 64.6 75 0.0016 29.7 10.7 76 244-323 3-87 (260)
402 PRK06182 short chain dehydroge 64.6 23 0.00051 33.6 7.3 73 242-322 3-83 (273)
403 PRK07102 short chain dehydroge 64.5 32 0.00069 32.0 8.0 78 244-322 3-85 (243)
404 KOG3924 Putative protein methy 64.4 28 0.0006 35.4 7.7 161 226-420 177-351 (419)
405 PRK06138 short chain dehydroge 64.1 37 0.0008 31.6 8.4 80 242-324 5-92 (252)
406 KOG3350 Uncharacterized conser 63.7 12 0.00025 33.8 4.4 95 220-325 51-147 (217)
407 PRK06603 enoyl-(acyl carrier p 63.4 85 0.0018 29.6 10.9 79 242-322 8-95 (260)
408 KOG1502 Flavonol reductase/cin 63.3 68 0.0015 32.0 10.1 120 242-381 6-128 (327)
409 PRK05599 hypothetical protein; 63.3 27 0.00058 32.8 7.3 77 244-321 2-85 (246)
410 PRK08589 short chain dehydroge 63.2 67 0.0015 30.5 10.2 79 242-323 6-92 (272)
411 PRK12746 short chain dehydroge 63.1 47 0.001 31.0 9.0 79 242-322 6-99 (254)
412 PF07942 N2227: N2227-like pro 63.0 82 0.0018 30.6 10.5 44 240-286 55-98 (270)
413 COG4555 NatA ABC-type Na+ tran 62.6 7.2 0.00016 36.2 2.9 18 312-329 150-167 (245)
414 PRK06181 short chain dehydroge 62.3 53 0.0012 30.8 9.2 77 243-321 2-86 (263)
415 PRK06505 enoyl-(acyl carrier p 62.2 79 0.0017 30.2 10.4 80 241-322 6-94 (271)
416 PRK05876 short chain dehydroge 60.8 94 0.002 29.7 10.7 80 242-323 6-93 (275)
417 PRK08125 bifunctional UDP-gluc 60.7 52 0.0011 36.2 9.9 76 240-322 313-391 (660)
418 TIGR01832 kduD 2-deoxy-D-gluco 60.4 64 0.0014 29.9 9.3 79 241-323 4-90 (248)
419 PF02086 MethyltransfD12: D12 60.2 12 0.00026 35.5 4.3 40 241-283 20-59 (260)
420 COG3510 CmcI Cephalosporin hyd 60.1 19 0.00042 33.0 5.2 61 240-305 68-131 (237)
421 PF05430 Methyltransf_30: S-ad 59.7 4 8.7E-05 34.7 0.8 75 294-409 33-108 (124)
422 PRK08278 short chain dehydroge 59.7 37 0.0008 32.4 7.7 81 242-324 6-101 (273)
423 PRK06949 short chain dehydroge 59.6 48 0.001 30.9 8.4 81 241-323 8-96 (258)
424 PRK07074 short chain dehydroge 59.4 38 0.00082 31.7 7.6 76 243-322 3-86 (257)
425 PF01488 Shikimate_DH: Shikima 59.0 20 0.00043 30.6 5.0 78 240-328 10-87 (135)
426 PRK09291 short chain dehydroge 59.0 1.5E+02 0.0033 27.4 12.4 78 243-322 3-82 (257)
427 PRK06198 short chain dehydroge 58.7 78 0.0017 29.5 9.7 82 241-324 5-95 (260)
428 COG0451 WcaG Nucleoside-diphos 58.6 35 0.00076 32.8 7.4 108 245-379 3-113 (314)
429 PRK12859 3-ketoacyl-(acyl-carr 58.3 1.5E+02 0.0033 27.7 11.6 84 241-325 5-108 (256)
430 KOG1197 Predicted quinone oxid 57.7 35 0.00075 32.9 6.6 62 223-285 127-190 (336)
431 PRK08219 short chain dehydroge 57.6 44 0.00095 30.4 7.5 75 243-323 4-81 (227)
432 COG0300 DltE Short-chain dehyd 57.5 1.7E+02 0.0036 28.4 11.5 87 240-327 4-98 (265)
433 PRK08263 short chain dehydroge 57.1 85 0.0018 29.8 9.7 78 242-324 3-88 (275)
434 PRK05993 short chain dehydroge 57.0 43 0.00093 32.0 7.6 72 242-321 4-84 (277)
435 PRK07041 short chain dehydroge 56.8 1.2E+02 0.0025 27.7 10.3 73 249-323 3-79 (230)
436 TIGR03026 NDP-sugDHase nucleot 56.5 95 0.0021 31.9 10.4 34 251-284 7-41 (411)
437 PRK06079 enoyl-(acyl carrier p 56.3 85 0.0018 29.5 9.4 78 241-322 6-92 (252)
438 PRK07060 short chain dehydroge 56.1 44 0.00096 30.8 7.4 78 241-325 8-89 (245)
439 COG4221 Short-chain alcohol de 56.1 29 0.00062 33.1 5.9 78 242-323 6-91 (246)
440 cd08237 ribitol-5-phosphate_DH 55.9 24 0.00052 35.1 5.8 47 238-284 160-207 (341)
441 KOG2798 Putative trehalase [Ca 55.8 20 0.00042 35.5 4.8 41 241-284 150-190 (369)
442 PRK08324 short chain dehydroge 55.6 48 0.001 36.6 8.6 81 241-324 421-509 (681)
443 PRK09135 pteridine reductase; 55.5 90 0.0019 28.7 9.4 81 241-322 5-94 (249)
444 PRK09424 pntA NAD(P) transhydr 55.4 26 0.00056 37.2 6.1 49 238-292 161-210 (509)
445 PRK07454 short chain dehydroge 55.4 71 0.0015 29.5 8.7 78 242-321 6-91 (241)
446 PRK08159 enoyl-(acyl carrier p 55.2 1.5E+02 0.0033 28.2 11.1 79 242-322 10-97 (272)
447 PRK10675 UDP-galactose-4-epime 54.9 64 0.0014 31.6 8.7 78 244-322 2-82 (338)
448 PRK12744 short chain dehydroge 54.4 1.2E+02 0.0027 28.2 10.3 78 242-321 8-97 (257)
449 PRK06482 short chain dehydroge 54.0 65 0.0014 30.5 8.3 76 244-324 4-87 (276)
450 PRK07024 short chain dehydroge 53.6 43 0.00094 31.4 6.9 77 243-322 3-87 (257)
451 PRK06179 short chain dehydroge 53.6 94 0.002 29.3 9.3 72 242-323 4-83 (270)
452 TIGR03201 dearomat_had 6-hydro 53.4 41 0.00088 33.4 7.0 50 237-292 162-212 (349)
453 PF02719 Polysacc_synt_2: Poly 53.3 31 0.00067 33.9 5.8 116 248-381 3-128 (293)
454 PF05570 DUF765: Circovirus pr 53.3 7.2 0.00016 23.2 0.9 24 1-24 1-24 (29)
455 PRK06077 fabG 3-ketoacyl-(acyl 52.9 1.4E+02 0.003 27.6 10.2 81 242-324 6-95 (252)
456 KOG2352 Predicted spermine/spe 52.6 6.7 0.00015 40.8 1.1 79 242-321 296-378 (482)
457 COG1748 LYS9 Saccharopine dehy 52.5 22 0.00049 36.3 4.9 74 243-322 2-77 (389)
458 PRK06701 short chain dehydroge 52.3 1.4E+02 0.0031 28.7 10.5 80 241-322 45-133 (290)
459 PRK05855 short chain dehydroge 52.2 1.1E+02 0.0025 32.2 10.7 82 242-325 315-404 (582)
460 PLN02572 UDP-sulfoquinovose sy 52.1 73 0.0016 33.1 8.8 80 242-323 47-146 (442)
461 PLN02540 methylenetetrahydrofo 52.0 36 0.00078 36.6 6.5 63 242-304 28-100 (565)
462 PRK12742 oxidoreductase; Provi 51.5 69 0.0015 29.4 7.8 76 241-323 5-85 (237)
463 TIGR00507 aroE shikimate 5-deh 51.5 2.1E+02 0.0047 27.3 11.5 75 240-328 115-190 (270)
464 PLN02686 cinnamoyl-CoA reducta 51.3 1.1E+02 0.0024 30.8 9.8 77 240-318 51-133 (367)
465 PF11968 DUF3321: Putative met 50.5 16 0.00034 34.2 3.1 116 243-409 53-178 (219)
466 TIGR02632 RhaD_aldol-ADH rhamn 50.2 1.1E+02 0.0024 33.8 10.2 81 242-323 414-503 (676)
467 PRK08340 glucose-1-dehydrogena 50.0 2.2E+02 0.0048 26.6 13.0 76 244-322 2-85 (259)
468 PRK06935 2-deoxy-D-gluconate 3 49.8 81 0.0017 29.5 8.1 80 241-323 14-101 (258)
469 PRK06398 aldose dehydrogenase; 48.9 61 0.0013 30.5 7.2 70 241-323 5-82 (258)
470 PF01073 3Beta_HSD: 3-beta hyd 48.6 70 0.0015 31.0 7.6 110 249-383 3-117 (280)
471 PRK06141 ornithine cyclodeamin 48.5 1.1E+02 0.0023 30.3 9.0 63 229-291 112-175 (314)
472 PRK12748 3-ketoacyl-(acyl-carr 48.3 2E+02 0.0043 26.8 10.6 79 242-322 5-104 (256)
473 PRK07889 enoyl-(acyl carrier p 48.1 1.1E+02 0.0023 28.9 8.7 78 241-322 6-94 (256)
474 PRK07069 short chain dehydroge 47.9 1.4E+02 0.0031 27.5 9.5 74 249-322 5-88 (251)
475 PRK08264 short chain dehydroge 47.9 1E+02 0.0023 28.2 8.5 72 242-322 6-82 (238)
476 PRK07806 short chain dehydroge 47.8 90 0.002 28.9 8.1 79 242-322 6-93 (248)
477 PRK06484 short chain dehydroge 47.7 1.1E+02 0.0024 32.1 9.6 78 241-323 268-353 (520)
478 PF03446 NAD_binding_2: NAD bi 47.7 58 0.0013 28.6 6.3 99 251-397 8-109 (163)
479 PRK09590 celB cellobiose phosp 47.7 32 0.0007 28.2 4.3 55 244-320 3-57 (104)
480 PRK12825 fabG 3-ketoacyl-(acyl 47.2 2.1E+02 0.0046 26.0 10.5 79 242-322 6-93 (249)
481 PRK15057 UDP-glucose 6-dehydro 47.1 1.5E+02 0.0034 30.2 10.1 34 251-284 7-40 (388)
482 PRK07340 ornithine cyclodeamin 47.0 1.2E+02 0.0026 29.9 9.0 85 229-322 112-197 (304)
483 CHL00194 ycf39 Ycf39; Provisio 46.9 71 0.0015 31.3 7.5 68 244-319 2-70 (317)
484 KOG1205 Predicted dehydrogenas 46.6 70 0.0015 31.2 7.1 83 242-325 12-103 (282)
485 cd01065 NAD_bind_Shikimate_DH 46.6 1.8E+02 0.0039 24.7 9.3 72 241-323 18-91 (155)
486 PRK10669 putative cation:proto 46.4 27 0.00058 37.5 4.6 66 250-322 423-490 (558)
487 cd01078 NAD_bind_H4MPT_DH NADP 46.3 71 0.0015 28.8 6.9 46 241-287 27-73 (194)
488 PF07669 Eco57I: Eco57I restri 46.2 18 0.0004 29.5 2.7 66 313-397 2-69 (106)
489 PRK03562 glutathione-regulated 46.2 29 0.00063 37.9 4.9 68 243-319 401-470 (621)
490 TIGR01472 gmd GDP-mannose 4,6- 46.2 51 0.0011 32.6 6.4 77 248-324 5-89 (343)
491 PRK05872 short chain dehydroge 45.9 1.5E+02 0.0033 28.6 9.5 80 241-323 8-95 (296)
492 PRK07792 fabG 3-ketoacyl-(acyl 45.7 1.8E+02 0.0039 28.2 10.1 79 242-323 12-99 (306)
493 PRK05854 short chain dehydroge 45.5 2.8E+02 0.0061 27.0 11.5 80 242-322 14-102 (313)
494 PRK09260 3-hydroxybutyryl-CoA 45.5 74 0.0016 30.8 7.3 42 244-287 3-45 (288)
495 PRK09496 trkA potassium transp 45.2 46 0.00099 34.4 6.1 74 242-322 231-306 (453)
496 PRK10310 PTS system galactitol 45.2 54 0.0012 26.2 5.2 56 244-322 4-59 (94)
497 PRK00258 aroE shikimate 5-dehy 45.1 1.3E+02 0.0028 29.1 8.8 75 241-329 122-198 (278)
498 PRK07201 short chain dehydroge 44.9 3.5E+02 0.0075 29.3 13.2 76 244-321 2-85 (657)
499 COG1086 Predicted nucleoside-d 44.9 1.8E+02 0.0039 31.3 10.2 121 242-381 250-376 (588)
500 COG4301 Uncharacterized conser 44.8 88 0.0019 30.0 7.1 70 234-304 71-145 (321)
No 1
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.3e-63 Score=511.39 Aligned_cols=387 Identities=22% Similarity=0.301 Sum_probs=313.6
Q ss_pred HHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhccccc--ccchHHHHH
Q 013515 33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSK--WKRQEELVY 109 (441)
Q Consensus 33 ~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~--~~~~~~lL~ 109 (441)
++|..|+++|.+|..++.+++ ++.... ...+.+|++|+++|||||+|++..||++|++ ++++. ....+.+||
T Consensus 4 ~~R~~A~~~L~~v~~~~~~~~~~l~~~~---~~l~~~d~~~~~~lv~gvlr~~~~lD~~i~~--~~~~~~l~~~~r~iLr 78 (431)
T PRK14903 4 NVRLLAYRLLRKYEKEKFIFREDVDSVL---SFLDDKDRRFFKELVWGVVRKEELLDWYINQ--LLKKKDIPPAVRVALR 78 (431)
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCCHHHHHHHH
Confidence 479999999999998776655 333211 1356789999999999999999999999997 55543 123588999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHhhHH----H-------------------HHHHHHHHHHccccc--HHHHHHhhCCC
Q 013515 110 ILTYDILFGQEISLVGDAEKFLMLHKGA----I-------------------QLALAQLLVRNKVKS--IEDLMALYQTP 164 (441)
Q Consensus 110 l~~yql~f~~~ip~~~~i~~~v~~~k~~----~-------------------~~~l~~~~~~~~~~~--~e~~~~~~~~~ 164 (441)
+++||++|++.+|.+++++++|+.+|.. + .++++.|+.+++... .++..+.++++
T Consensus 79 ~~~yel~~~~~~p~~aavneaV~lak~~~~~~fVNaVLr~~~r~~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~ 158 (431)
T PRK14903 79 MGAYQLLFMNSVPDYAAVSETVKLVKNENFKKLVNAVLRRLRTVPEPKELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWN 158 (431)
T ss_pred HHHHHHHhccCCCcceeHHHHHHHHhccchHHHHHHHHHHHHHhhcchhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHh
Confidence 9999999998679999999999887642 1 123344444433221 23334445567
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCC-CCCCCCChhhhcCcccccchhhHHHHHHhCCCCC
Q 013515 165 DVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP-GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPG 242 (441)
Q Consensus 165 ~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~g~~~~Qd~ss~l~~~~l~~~~g 242 (441)
+.++|+++|||+++.+.+++.+.|++ |+.+++++++|+++.+.. ...+..++.|++|++++||.+|++++.++++++|
T Consensus 159 ~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g 238 (431)
T PRK14903 159 QEPLPTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPG 238 (431)
T ss_pred cCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEECCCCCceEEEcCCCCCcccChHHHCCeEEEECHHHHHHHHHhCCCCC
Confidence 78999999999999999999999976 788888899999998865 3468889999999999999999999999999999
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
++|||+|||||+||++++.++++.++|+|+|+++.|++.+++|++++|+++++++++|+..++.... ++||+|++|||
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~--~~fD~Vl~DaP 316 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQ--DTFDRILVDAP 316 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhh--ccCCEEEECCC
Confidence 9999999999999999999998889999999999999999999999999889999999987653221 57999999999
Q ss_pred CCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchhc
Q 013515 323 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIAM 401 (441)
Q Consensus 323 CSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~ 401 (441)
|||+|+++++||++|. ++++++..++.+|.++|.+++++++ ||.|||||||++++|||+||.+||+ .
T Consensus 317 Csg~G~~~~~p~~~~~----------~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~--~ 384 (431)
T PRK14903 317 CTSLGTARNHPEVLRR----------VNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY--E 384 (431)
T ss_pred CCCCccccCChHHHHh----------CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH--h
Confidence 9999999999998763 3688999999999999999999887 7999999999999999999999995 4
Q ss_pred CCCeEEecCCC---CCCCccccccccceeeeecccCCCCCCCC
Q 013515 402 SFGFQLATPFP---NGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 402 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
+++|++.+... .+...+.. ....+++.|+. .+.|+|+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~P~~-~~dGFf~ 424 (431)
T PRK14903 385 QKDAEVIDIRDKLEEFEVEGIW--DGYGFLMLPDE-TLTPFYV 424 (431)
T ss_pred CCCcEEeccccccccccccccc--CCCcEEECcCC-CCCcEEE
Confidence 77888655311 11111110 01126889986 4568884
No 2
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2.4e-63 Score=511.58 Aligned_cols=378 Identities=25% Similarity=0.340 Sum_probs=311.5
Q ss_pred HHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccc----cchHHH
Q 013515 33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW----KRQEEL 107 (441)
Q Consensus 33 ~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~----~~~~~l 107 (441)
++|+.|+++|++++.+ .+++ ++..... ....+.+||+|+++|||||+|++..||++|.+ +++++. ...+.+
T Consensus 2 ~~R~~A~~~L~~i~~~-~~~~~~l~~~~~-~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~--~~~~~~~~l~~~~r~i 77 (434)
T PRK14901 2 NARQLAWEILQAVARG-AYADVALERVLR-KYPLSGADRALVTELVYGCIRRRRTLDAWIDQ--LGKKPAHKQPPDLRWL 77 (434)
T ss_pred CHHHHHHHHHHHHHcC-CchHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHhHHHHHHHHHH--hcCCChhhcCHHHHHH
Confidence 5899999999999885 5544 3332211 12345678999999999999999999999997 455332 235889
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhhHH-------H------------------------------HHHHHHHHHHcc
Q 013515 108 VYILTYDILFGQEISLVGDAEKFLMLHKGA-------I------------------------------QLALAQLLVRNK 150 (441)
Q Consensus 108 L~l~~yql~f~~~ip~~~~i~~~v~~~k~~-------~------------------------------~~~l~~~~~~~~ 150 (441)
||+++||++|++++|.++++|++|+.+|.. + .++++.|+.+++
T Consensus 78 Lrla~yel~~~~~~p~~aavneaVelak~~~~~~~~~fVNgVLr~~~r~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~~ 157 (434)
T PRK14901 78 LHLGLYQLRYMDRIPASAAVNTTVELAKQNGLGGLAGVVNGILRQYLRAREAGDPLPLPEDPIERLAILHSFPDWLVKLW 157 (434)
T ss_pred HHHHHHHHHhCccCCcHHHHHHHHHHHHHcCchhhhhhcCHHHHHHHHhhhccccccCCcChHHHHHHHhCCcHHHHHHH
Confidence 999999999998899999999999877531 0 012344444433
Q ss_pred ccc--HHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCC-CCCCCChhhhcCccccc
Q 013515 151 VKS--IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG-CDLHVHPLIVNGCVFLQ 226 (441)
Q Consensus 151 ~~~--~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~g~~~~Q 226 (441)
... .+++.+.+++.+.++|+++|||+++.+.+++.+.|+. |+.+++.+++|+++.+..+ ..+..+++|++|++++|
T Consensus 158 ~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~q 237 (434)
T PRK14901 158 LEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLTGNPGSIRQLPGYEEGWWTVQ 237 (434)
T ss_pred HHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEECCCCCCeEEecCCCCccccChHHhCCeEEEE
Confidence 222 2333344556778999999999999999999999877 7888888999999999753 35888999999999999
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
|.+|++++.++++++|++|||+|||||+||+++++++++.++|+|+|+++.|++.+++|++++|+++|+++++|+..++.
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~ 317 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE 317 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc
Confidence 99999999999999999999999999999999999988789999999999999999999999999999999999988752
Q ss_pred CCC-CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 307 KDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 307 ~~~-~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
... ..++||.|++||||||+|+++++||++|. ++++++..++.+|.++|.+|+++++ ||+|||||||+
T Consensus 318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~----------~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWR----------QTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccccccccCCEEEEeCCCCcccccccCcchhhh----------CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 110 02579999999999999999999999774 3689999999999999999999887 79999999999
Q ss_pred CChhcHHHHHHHhchhcCCCeEEecCCCCCCCccccccccceeeeecccCCCCCCCC
Q 013515 385 HQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 385 ~~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
+++|||+||.+||+ .+++|++++. . .++.|+.+.+.|+|+
T Consensus 388 ~~~Ene~~v~~~l~--~~~~~~~~~~--~-------------~~~~P~~~~~dGfF~ 427 (434)
T PRK14901 388 HPAENEAQIEQFLA--RHPDWKLEPP--K-------------QKIWPHRQDGDGFFM 427 (434)
T ss_pred ChhhHHHHHHHHHH--hCCCcEecCC--C-------------CccCCCCCCCCcEEE
Confidence 99999999999995 4678886531 0 127799999999984
No 3
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=4.2e-61 Score=494.15 Aligned_cols=381 Identities=22% Similarity=0.292 Sum_probs=303.3
Q ss_pred HHHHHHHHHHHHccChhhHHHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccccch---HHHHHHH
Q 013515 35 RREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQ---EELVYIL 111 (441)
Q Consensus 35 R~~A~~vL~~v~~~~~~~~~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~~~---~~lL~l~ 111 (441)
|+.|+++|++++.++.+++..... ....+.+|++|+++|||||+|++..||++|++ +++++++.. ..+|+++
T Consensus 1 R~~A~~~L~~~~~~~~~~~~~~~~---~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~--~~~~~~~~l~~~~~~L~~~ 75 (426)
T TIGR00563 1 RSIAAQALEQLEQGQSLSNLLPPL---QQKVSDQDRALLQELCFGVLRTLSQLDWLIKK--LMDRPMKGKPRTVHYLILV 75 (426)
T ss_pred CHHHHHHHHHHHcCCchHHHHHhh---hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhCCCccccCHHHHHHHHH
Confidence 688999999998877776653322 23345678999999999999999999999998 555544322 3377777
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhhHH-------HHH------------------------HHHHHHHHcccc-cHHHHHH
Q 013515 112 TYDILFGQEISLVGDAEKFLMLHKGA-------IQL------------------------ALAQLLVRNKVK-SIEDLMA 159 (441)
Q Consensus 112 ~yql~f~~~ip~~~~i~~~v~~~k~~-------~~~------------------------~l~~~~~~~~~~-~~e~~~~ 159 (441)
+|+++|..++|.++++|++|+.+|.. +.+ +++.|+.+++.. ..+++.+
T Consensus 76 ~~e~l~~~~~p~~aainEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~~~~~~~l~~~~s~P~wl~~~~~~~~~~~~~~ 155 (426)
T TIGR00563 76 GLYQLLYTRIPAHAAVAETVEGAKAIKRKGLKGLVNGVLRRFQREQEELLAEFNALDARYLHPEWLVKRLQKAYPGQWQS 155 (426)
T ss_pred HHHHHhcCCCCCEehHHHHHHHHHhcCCccchhhHHHHHHHHhhcchhhcchhHhHHHHcCCCHHHHHHHHHHhHHHHHH
Confidence 77777665589999999999887641 111 222333332111 1233334
Q ss_pred hhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCCCCCCCChhhhcCcccccchhhHHHHHHhC
Q 013515 160 LYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALA 238 (441)
Q Consensus 160 ~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Qd~ss~l~~~~l~ 238 (441)
.+++.+.++|+|+|||+.+.+.+++.+.|++ |+.+.+++++|+++.+..+..+..++.|++|++++||.+|++++..++
T Consensus 156 ~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~L~ 235 (426)
T TIGR00563 156 ICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTVQDASAQWVATWLA 235 (426)
T ss_pred HHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeCCCCCCeEEECCCCCcccCchhhCCeEEEECHHHHHHHHHhC
Confidence 4556677999999999999999999999977 778888899999999876556888999999999999999999999999
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE--EeccCCCCCCCCCCCCCccE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV--LHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~--~~~D~~~~~~~~~~~~~fD~ 316 (441)
+++|++|||+|||||+||++++++++ .++|+|+|+++++++.+++|++++|+. +.+ ..+|........ ...+||.
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~~-~~~~fD~ 312 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQWA-ENEQFDR 312 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccccc-cccccCE
Confidence 99999999999999999999999886 689999999999999999999999986 444 666765543211 1257999
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHH
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKS 395 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~ 395 (441)
|++||||||+|+++++||++|. ++++++.+++.+|.++|.+|+++++ ||.|||||||++++|||+||.+
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~----------~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~ 382 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWL----------RKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKA 382 (426)
T ss_pred EEEcCCCCCCcccccCcchhhc----------CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHH
Confidence 9999999999999999999764 3689999999999999999999887 8999999999999999999999
Q ss_pred HhchhcCCCeEEecCCCCCCCccccccccceeeeecccCCCCCCCC
Q 013515 396 VLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
||+ .+++|++... .... . .....+++.|+.+.+.|+|+
T Consensus 383 ~l~--~~~~~~~~~~--~~~~---~-~~~~~~~~~P~~~~~dGff~ 420 (426)
T TIGR00563 383 FLQ--EHPDFPFEKT--GTPE---Q-VRDGGLQILPHAEEGDGFFY 420 (426)
T ss_pred HHH--hCCCCeeccC--CCcc---c-cCCCcEEECCCCCCCCCeEE
Confidence 996 3667765331 0000 0 11224899999999999995
No 4
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.3e-59 Score=483.02 Aligned_cols=380 Identities=23% Similarity=0.298 Sum_probs=312.7
Q ss_pred HHHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhccccccc----chHH
Q 013515 32 YFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----RQEE 106 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~----~~~~ 106 (441)
|++|+.|+++|+++..++.+.+ ++..... ..+.+|++|+++|||||+|++..||++|.+ +++++.. ..+.
T Consensus 2 ~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~---~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~--~~~~~~~~l~~~~r~ 76 (427)
T PRK10901 2 MNLRALAAAAILQVVDQGQSLSAALPALQQ---KVSDKDRALLQELCYGVLRRLPRLEWLIAQ--LLAKPLKGKQRIVHA 76 (427)
T ss_pred chHHHHHHHHHHHHHHcCCcHHHHHHHHHh---hCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhCCCccccCHHHHH
Confidence 4789999999999988666554 3333211 344578999999999999999999999998 5555432 2478
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhhHH-------H-------------------------HHHHHHHHHHccccc-
Q 013515 107 LVYILTYDILFGQEISLVGDAEKFLMLHKGA-------I-------------------------QLALAQLLVRNKVKS- 153 (441)
Q Consensus 107 lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~-------~-------------------------~~~l~~~~~~~~~~~- 153 (441)
+||+++||++|++ +|.++++|++|+.+|.. + .++++.|+.+++...
T Consensus 77 iLrla~yell~~~-iP~~a~vneaVelak~~~~~~~~~fVNaVLr~i~~~~~~~~~~~~~~~~~~~s~P~wl~~~~~~~~ 155 (427)
T PRK10901 77 LLLVGLYQLLYTR-IPAHAAVDETVEAAKALKRPWAKGLVNAVLRRFQREQEELLAELQADPVARYNHPSWLIKRLKKAY 155 (427)
T ss_pred HHHHHHHHHhccC-CCcchHHHHHHHHHHhcCCccchhhHHHHHHHhhhhhhhhhhhhhhchHhHhcCCHHHHHHHHHHh
Confidence 9999999999997 99999999999887531 0 123344555444332
Q ss_pred HHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCCCCCCCChhhhcCcccccchhhHH
Q 013515 154 IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSM 232 (441)
Q Consensus 154 ~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Qd~ss~l 232 (441)
.+++...+++.+.++|+|+|||+++.+++++.+.|+. ++.+++++++|+++.+.....+..+++|++|.+++||.+|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~iQd~~s~~ 235 (427)
T PRK10901 156 PEQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPHAVGPDAIRLETPVPVHQLPGFAEGWVSVQDAAAQL 235 (427)
T ss_pred HHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCeEEECCCCCcccCchhhCceEEEECHHHHH
Confidence 2344445567788999999999999999999999877 788888899999999976566888999999999999999999
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 312 (441)
++..+++++|++|||+|||||++|+++++.+++ ++|+|+|+++.+++.+++|++++|+. ++++++|+..+..... .+
T Consensus 236 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~-~~ 312 (427)
T PRK10901 236 AATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWD-GQ 312 (427)
T ss_pred HHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcc-cC
Confidence 999999999999999999999999999998754 79999999999999999999999985 6899999987543211 25
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHH
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENED 391 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~ 391 (441)
+||.|++||||||+|+++++||++|.. +++++.++...|.++|.+|+++++ ||.|||||||++++|||+
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~----------~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~ 382 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLR----------RPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQ 382 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccC----------CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHH
Confidence 799999999999999999999987643 578999999999999999999887 899999999999999999
Q ss_pred HHHHHhchhcCCCeEEecCCCCCCCccccccccceeeeecccCCCCCCCC
Q 013515 392 VIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 392 vV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
+|..+|+ .+++|++++..+ . . ...+++.|+.+.+.|+|+
T Consensus 383 ~v~~~l~--~~~~~~~~~~~~-~------~--~~~~~~~P~~~~~dGff~ 421 (427)
T PRK10901 383 QIKAFLA--RHPDAELLDTGT-P------Q--QPGRQLLPGEEDGDGFFY 421 (427)
T ss_pred HHHHHHH--hCCCCEEecCCC-C------C--CCceEECCCCCCCCCeEE
Confidence 9999995 467788765321 0 0 112799999999999984
No 5
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.2e-59 Score=486.09 Aligned_cols=392 Identities=26% Similarity=0.349 Sum_probs=319.1
Q ss_pred HHHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccc---cccchHHH
Q 013515 32 YFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNS---KWKRQEEL 107 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~---~~~~~~~l 107 (441)
|++|+.|+++|++++.++.+.+ ++..... ....+.+|++|+++||||++|++..||++|.+ ++++ .....+.+
T Consensus 3 ~~~R~~A~~~L~~~~~~~~~~~~~l~~~~~-~~~l~~~d~~~~~~lv~g~lr~~~~ld~~i~~--~~~~~~~l~~~~r~i 79 (444)
T PRK14902 3 MNARELALEVLIKVENNGAYSNIALNKVLK-KSELSDKDKALLTELVYGTIQRKLTLDYYLAP--FIKKRKKLDPWVRNL 79 (444)
T ss_pred ccHHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHhHHHHHHHHHH--HhhhhhhCCHHHHHH
Confidence 4789999999999987555443 4333221 12355678999999999999999999999998 5554 11234889
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhhHH-------H----------------------------HHHHHHHHHHcccc
Q 013515 108 VYILTYDILFGQEISLVGDAEKFLMLHKGA-------I----------------------------QLALAQLLVRNKVK 152 (441)
Q Consensus 108 L~l~~yql~f~~~ip~~~~i~~~v~~~k~~-------~----------------------------~~~l~~~~~~~~~~ 152 (441)
||+++||++|.+.+|.++++|++|+.+|.. + .++++.|+.+++..
T Consensus 80 Lrla~~el~~~~~~p~~~~ineav~lak~~~~~~~~~fVNaVL~~i~~~~~~~~~~~~~~~~~~~~~~~~P~w~~~~~~~ 159 (444)
T PRK14902 80 LRMSLYQLLYLDKVPDHAAVNEAVEIAKKRGHKGIAKFVNGVLRNILREGLPDIDEIKDPVKRLSIKYSHPVWLVKRWID 159 (444)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHHhCCCchhHHHHHHHHHHhhccccccccccCHHHHHHHHhCChHHHHHHHHH
Confidence 999999999998899999999998887531 1 12334455444332
Q ss_pred c--HHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCCCCCCCChhhhcCcccccchh
Q 013515 153 S--IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKA 229 (441)
Q Consensus 153 ~--~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Qd~s 229 (441)
. .+++.+.+++.+.++|+|+|||+.+.+.+++.+.|++ ++.++++++.|+++.+++ ..+..++.|++|.+++||.+
T Consensus 160 ~~g~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~qd~~ 238 (444)
T PRK14902 160 QYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEK-GNIAGTDLFKDGLITIQDES 238 (444)
T ss_pred HhCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEcCCCCCeEEEeC-CCcccChHHhCceEEEEChH
Confidence 1 2233334556677999999999999999999998877 778888899999999986 56889999999999999999
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
|++++.++++++|++|||+|||||++|++++..+++.++|+|+|+++.+++.+++|++++|+++|.++++|+.++.....
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~ 318 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA 318 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc
Confidence 99999999999999999999999999999999986678999999999999999999999999889999999988653322
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChh
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVE 388 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~E 388 (441)
+.||.|++||||||+|+++++||.+|. ++++++..++.+|..+|.+|+++++ ||.|||||||++++|
T Consensus 319 --~~fD~Vl~D~Pcsg~G~~~~~p~~~~~----------~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E 386 (444)
T PRK14902 319 --EKFDKILVDAPCSGLGVIRRKPDIKYN----------KTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEE 386 (444)
T ss_pred --ccCCEEEEcCCCCCCeeeccCcchhhc----------CCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhh
Confidence 579999999999999999999998764 2578999999999999999999887 899999999999999
Q ss_pred cHHHHHHHhchhcCCCeEEecCCCCCCCccccccccceeeeecccCCCCCCCC
Q 013515 389 NEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 389 Ne~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
||.||.++++ .+++|++++....+............+|+.|+.+.+.|+|+
T Consensus 387 ne~vv~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~ 437 (444)
T PRK14902 387 NEEVIEAFLE--EHPEFELVPLQHEKPDELVYEVKDGYLQILPNDYGTDGFFI 437 (444)
T ss_pred hHHHHHHHHH--hCCCcEEecccccccccccccccCCeEEECCCCCCCCCeEE
Confidence 9999999995 35678887755443322111012234899999999999995
No 6
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2.4e-58 Score=475.90 Aligned_cols=388 Identities=22% Similarity=0.303 Sum_probs=303.7
Q ss_pred HHHHHHHHHHHHHHHccChhhHH-HHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhccccccc----chHH
Q 013515 32 YFARREAAKVLRLVLRGDARRRA-VGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----RQEE 106 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~~~~~~~-~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~----~~~~ 106 (441)
|++|+.|+++|++++.++.+++. +..... ....+.+|++|+++|||||+|++..||++|.+ +++.++. ..+.
T Consensus 2 ~~~R~~A~~~L~~~~~~~~~~~~~l~~~~~-~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~--~~~~~~~rl~~~~r~ 78 (445)
T PRK14904 2 MTARELALQVLQELETGERKSDTLLHRMLE-RSSLERNDRALATELVNGVLRYRLQLDFIISR--FYHHDLEKAAPVLKN 78 (445)
T ss_pred chHHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCChhhCCHHHHH
Confidence 47899999999999887766553 332211 12345679999999999999999999999997 5554322 3578
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhhHH-------H------------------------------HHHHHHHHHHc
Q 013515 107 LVYILTYDILFGQEISLVGDAEKFLMLHKGA-------I------------------------------QLALAQLLVRN 149 (441)
Q Consensus 107 lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~-------~------------------------------~~~l~~~~~~~ 149 (441)
+||+++||++|++.+|.++.+|++|+..|.. + .++++.|+.++
T Consensus 79 iLrla~~ell~~~~~p~~a~vneaVelak~~~~~~~~~fVNgVLr~i~~~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~ 158 (445)
T PRK14904 79 ILRLGVYQLLFLDRVPRWAAVNECVKLARKYKGEHMAKLVNGVLRNISPETISLDEWLKGMPEAERLSLLYSHPEWLLER 158 (445)
T ss_pred HHHHHHHHHHhCCCCCCeeeHHHHHHHHHHhCCCccccchHHHHHHHHHhhccccccccccchHHHHHHHhCCCHHHHHH
Confidence 9999999999998899999999988776531 0 01334455444
Q ss_pred cccc--HHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCCCCCCCChhhhcCccccc
Q 013515 150 KVKS--IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQ 226 (441)
Q Consensus 150 ~~~~--~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Q 226 (441)
+... .++..+.+...+.++|+|+|||+++.+.+++.+.|+. ++.+.+.++ + .+.+... .....++|..|.+++|
T Consensus 159 ~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~-~~~~~~~~~~G~~~vq 235 (445)
T PRK14904 159 WIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKSGL-P-NFFLSKD-FSLFEPFLKLGLVSVQ 235 (445)
T ss_pred HHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEcCc-c-eEEEecc-ccccChHHhCcEEEEe
Confidence 3322 1222333455677889999999999999999998876 666555443 3 3445422 2233489999999999
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
|.+|++++.++++.+|++|||+|||||++|.++++.+++.++|+|+|+++.+++.++++++++|+.+|+++++|+..+..
T Consensus 236 d~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~ 315 (445)
T PRK14904 236 NPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP 315 (445)
T ss_pred CHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc
Confidence 99999999999999999999999999999999999887778999999999999999999999999899999999987753
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
. ..||+|++||||||+|+++|+||++|. ++++++..++..|.++|.+++++++ ||+|||||||++
T Consensus 316 ~----~~fD~Vl~D~Pcsg~g~~~r~p~~~~~----------~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 316 E----EQPDAILLDAPCTGTGVLGRRAELRWK----------LTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred C----CCCCEEEEcCCCCCcchhhcCcchhhc----------CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 579999999999999999999999764 3689999999999999999999887 899999999999
Q ss_pred ChhcHHHHHHHhchhcCCCeEEecCCCCCCCcccc-ccccceeeeecccC-CCCCCCC
Q 013515 386 QVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQ-FLKALSIYFEPIQW-KTKKAFL 441 (441)
Q Consensus 386 ~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~p~~~-~~~g~~~ 441 (441)
++|||+||.+||+ .+++|++......+...... ......+++.|+.+ .+.|+|+
T Consensus 382 ~~Ene~~v~~~l~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~dGfF~ 437 (445)
T PRK14904 382 PEENELQIEAFLQ--RHPEFSAEPSPGSLPEPFHEVAHPKGAILTLPGEHEGFDGGFA 437 (445)
T ss_pred hhhHHHHHHHHHH--hCCCCEEeccccccccccccccCCCCcEEECCCCCCCCCcEEE
Confidence 9999999999996 36678765432222221111 00122378999987 5588874
No 7
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-56 Score=446.19 Aligned_cols=273 Identities=31% Similarity=0.425 Sum_probs=231.6
Q ss_pred HHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCCCCCCCChhhhcCcccccchhhHHHHH
Q 013515 157 LMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAA 235 (441)
Q Consensus 157 ~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Qd~ss~l~~~ 235 (441)
+...+.++..++|+++|||+++.+.+++.+.|+. ++...+..+.+.++.+.....+..+++|.+|++++||.+||+++.
T Consensus 71 ~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~vQd~sS~l~a~ 150 (355)
T COG0144 71 AEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQLPAL 150 (355)
T ss_pred HHHHHHHcCCCCCeeEEEcCccCCHHHHHHHHhhcccccccCCccccEEEecCCCCcccChhhhceEEEEcCHHHHHHHH
Confidence 3333445667889999999999999999999988 555554445567888887778889999999999999999999999
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGK-IVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~-V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
+|+|+||++|||+||||||||+|++++|.+.+. |+|+|+++.|++.+++|++++|+.|+.+++.|+..++......++|
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcC
Confidence 999999999999999999999999999987554 5999999999999999999999999999999998776544322369
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHH
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVI 393 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV 393 (441)
|+||+||||||+|++||+||++|. ++++++.+++++|++||.+|+++++ ||.|||||||+++||||+||
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~----------~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV 300 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWR----------RTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVV 300 (355)
T ss_pred cEEEECCCCCCCcccccCcccccc----------CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHH
Confidence 999999999999999999999874 4689999999999999999999987 89999999999999999999
Q ss_pred HHHhchhcCCCeEEecCCCCCCCcccc--ccccceeeeecccCCCCCCCC
Q 013515 394 KSVLPIAMSFGFQLATPFPNGTAEASQ--FLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 394 ~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~p~~~~~~g~~~ 441 (441)
.+||+ ++++|+++.....|...... ..-...+++.|+.|.+.|+|.
T Consensus 301 ~~~L~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~p~~~~~dGFFi 348 (355)
T COG0144 301 ERFLE--RHPDFELEPVRLPWGPLFEGLGSELGKTRRLYPHVHGTDGFFI 348 (355)
T ss_pred HHHHH--hCCCceeecccccccccccccccccCCeEEECCCCCCCCCeEE
Confidence 99995 46788887764445441111 111223899999997799984
No 8
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=9.4e-56 Score=453.33 Aligned_cols=269 Identities=25% Similarity=0.299 Sum_probs=229.9
Q ss_pred HhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCCC----CCCCCChhhhcCcccccchhhHHH
Q 013515 159 ALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG----CDLHVHPLIVNGCVFLQGKASSMV 233 (441)
Q Consensus 159 ~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~g~~~~Qd~ss~l~ 233 (441)
..+++.+.++|.++|||++|++.+++.+.|++ ++.+++.+|+++++.+..+ ..+..++.|..|.|++||.+||++
T Consensus 24 ~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~G~~yvQd~sS~l~ 103 (470)
T PRK11933 24 DFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPIPWCEEGFWIERDDEDALPLGNTAEHLSGLFYIQEASSMLP 103 (470)
T ss_pred HHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeECCCCCceEEEecCccccCCcccChHHHCCcEEEECHHHHHH
Confidence 33345677899999999999999999999877 7888889999999988642 247889999999999999999999
Q ss_pred HHHh--CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 234 AAAL--APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 234 ~~~l--~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
+.+| ++++|++|||+||||||||+++++++++.|.|+|+|+++.|++.+++|++++|+.||.+++.|+..+....+
T Consensus 104 ~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~-- 181 (470)
T PRK11933 104 VAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALP-- 181 (470)
T ss_pred HHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhch--
Confidence 9999 899999999999999999999999999889999999999999999999999999999999999987754432
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcH
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENE 390 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe 390 (441)
..||+||+||||||+|++||+||++|. |+++++..++.+|++||.+|+++++ ||+|||||||++++|||
T Consensus 182 ~~fD~ILvDaPCSG~G~~rk~p~~~~~----------~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE 251 (470)
T PRK11933 182 ETFDAILLDAPCSGEGTVRKDPDALKN----------WSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ 251 (470)
T ss_pred hhcCeEEEcCCCCCCcccccCHHHhhh----------CCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH
Confidence 579999999999999999999998652 5799999999999999999999988 89999999999999999
Q ss_pred HHHHHHhchhcCCC-eEEecCCCCCCCccccccccceeeeecccCCCCCCCC
Q 013515 391 DVIKSVLPIAMSFG-FQLATPFPNGTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 391 ~vV~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
+||++||+. +++ +++++....|............+|+.|+.+.+.|+|+
T Consensus 252 ~vV~~~L~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFi 301 (470)
T PRK11933 252 AVCLWLKET--YPDAVEFEPLGDLFPGAEKALTEEGFLHVFPQIYDSEGFFV 301 (470)
T ss_pred HHHHHHHHH--CCCcEEeccccccccccccccCCCCeEEECCCCCCCcceee
Confidence 999999963 555 4444322223321110111224899999999999995
No 9
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=1.6e-54 Score=420.93 Aligned_cols=266 Identities=34% Similarity=0.502 Sum_probs=226.2
Q ss_pred CCCCCCCceEEecCCCCCHHHHHHHHcc-cCcccccCCCCCe--EEeCCCCCCCCChhhhcCcccccchhhHHHHHHhCC
Q 013515 163 TPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDL--LILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAP 239 (441)
Q Consensus 163 ~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~g~~~~Qd~ss~l~~~~l~~ 239 (441)
+++.++|+|+|||+++++++++.+.|++ |+.+++.++.++. +.......+..++.|++|++++||.+|++++.+|++
T Consensus 4 ~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~~L~~ 83 (283)
T PF01189_consen 4 ANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVALALDP 83 (283)
T ss_dssp HCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHHHHTT
T ss_pred ccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEecccccccccccccc
Confidence 4567899999999999999999999988 7888888888888 444555678899999999999999999999999999
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
++|+.|||+||||||||++++++|.+.|.|+|+|++..|+..++++++++|+.++.++..|+........ ...||.|++
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~-~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP-ESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH-TTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc-ccccchhhc
Confidence 9999999999999999999999999899999999999999999999999999999999899887743221 135999999
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC----C-CcEEEEEcCCCCChhcHHHHH
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP----G-VERVVYSTCSIHQVENEDVIK 394 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~----~-~G~lvYsTCS~~~~ENe~vV~ 394 (441)
||||||+|+++++||++|. ++++++..++.+|++||++|++++ + ||+|||||||++++|||+||+
T Consensus 163 DaPCSg~G~i~r~p~~~~~----------~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~ 232 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWR----------RSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVE 232 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHH----------E-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHH
T ss_pred CCCccchhhhhhccchhhc----------ccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHH
Confidence 9999999999999999763 357899999999999999999999 7 899999999999999999999
Q ss_pred HHhchhcCCCeEEecCCCCCCCcccc--ccccceeeeecccCCCCCCCC
Q 013515 395 SVLPIAMSFGFQLATPFPNGTAEASQ--FLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 395 ~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~p~~~~~~g~~~ 441 (441)
+||+ .+++|++++....+...+.. ......+++.|+.+.+.|+|.
T Consensus 233 ~fl~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFFi 279 (283)
T PF01189_consen 233 KFLK--RHPDFELVPIPLPEPPPGFKSYPIGEGCLRILPHRHGTDGFFI 279 (283)
T ss_dssp HHHH--HSTSEEEECCESSTCEEESSGGCTGGGSEEESTTTSSSSSEEE
T ss_pred HHHH--hCCCcEEEeccccccccccccccCCCCEEEeCCCCCCCCCEEE
Confidence 9996 46789987744333322211 112234899999999999994
No 10
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=5.3e-49 Score=382.95 Aligned_cols=276 Identities=27% Similarity=0.360 Sum_probs=235.6
Q ss_pred cHHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-cCccc-ccCCCCCeEEeC-CCCCCCCChhhhcCcccccchh
Q 013515 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQ-KDDLVPDLLILP-PGCDLHVHPLIVNGCVFLQGKA 229 (441)
Q Consensus 153 ~~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~-~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~g~~~~Qd~s 229 (441)
...++++.+++++.+.|+++|.||+|.-+.+....|.. |+... ...|..-++++. +-..+...+.|..|++.+|+.+
T Consensus 150 ~~~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~s 229 (460)
T KOG1122|consen 150 PLVEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNAS 229 (460)
T ss_pred cHHHHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceeeccCc
Confidence 35667777788888999999999999877777776655 54432 234666666664 4457888999999999999999
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
|.++++.|+|+||++||||||+|||||+|+|.+|.+.|.|+|+|.+..|++.++.|+.++|++|..+.+.|...++...-
T Consensus 230 S~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~ 309 (460)
T KOG1122|consen 230 SFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF 309 (460)
T ss_pred ccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988764331
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChh
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVE 388 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~E 388 (441)
..+||+||+|+||||+|++.+.+..++. ++.+++.++..+|+++|.+|..+++ ||+||||||||.++|
T Consensus 310 -~~~fDRVLLDAPCSGtgvi~K~~~vkt~----------k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~E 378 (460)
T KOG1122|consen 310 -PGSFDRVLLDAPCSGTGVISKDQSVKTN----------KTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEE 378 (460)
T ss_pred -CcccceeeecCCCCCCcccccccccccc----------hhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhh
Confidence 1379999999999999999888777553 3689999999999999999999998 899999999999999
Q ss_pred cHHHHHHHhchhcCCCeEEecCCCCCCCccccccc------cceeeeecccCCCCCCCC
Q 013515 389 NEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLK------ALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 389 Ne~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~f~p~~~~~~g~~~ 441 (441)
||+||+++|. +++.+++++.-+.|...|.-..+ ..--||+||+|.-.|+|+
T Consensus 379 NE~vV~yaL~--K~p~~kL~p~~~~iG~~G~~~~~~~~psl~~~~r~yPh~hnmdgffv 435 (460)
T KOG1122|consen 379 NEAVVDYALK--KRPEVKLVPTGLDIGGEGRFRGGRFHPSLKLTRRFYPHVHNMDGFFV 435 (460)
T ss_pred hHHHHHHHHH--hCCceEeccccccCCCCCcccCcccCcchhheeeecCcccCCchHHH
Confidence 9999999995 46789999988899888811111 123799999999988884
No 11
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=1.5e-48 Score=376.59 Aligned_cols=254 Identities=28% Similarity=0.338 Sum_probs=213.5
Q ss_pred EEecCCCCCHHHHHHHHcc-cCcccccCCCCCeEEeCC-CCCCCCChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEc
Q 013515 172 VRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP-GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDAC 249 (441)
Q Consensus 172 ~RvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ 249 (441)
+|||++|++++++++.|++ ++.+++.. .++.+.+.. ...+..++.|.+|++++||.+|++++.++++++|++|||+|
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ 79 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLIPWC-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDMA 79 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCceeecC-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEEC
Confidence 6999999999999999987 66665543 456666653 33588999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCccc
Q 013515 250 SAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 329 (441)
Q Consensus 250 ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~ 329 (441)
||||+||+++++++++.+.|+|+|+++.+++.+++|++++|+.+|.+++.|+..+.... .+||+||+||||||+|++
T Consensus 80 ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~---~~fD~Vl~D~Pcsg~G~~ 156 (264)
T TIGR00446 80 AAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAV---PKFDAILLDAPCSGEGVI 156 (264)
T ss_pred CCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhc---cCCCEEEEcCCCCCCccc
Confidence 99999999999999878899999999999999999999999989999999988765432 569999999999999999
Q ss_pred ccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchhcCCCeEEe
Q 013515 330 AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLA 408 (441)
Q Consensus 330 ~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~ 408 (441)
+++||.+|. ++++++..++.+|.++|.+|+++++ ||+|||||||++++|||+||++||+. ++++.+.
T Consensus 157 ~~~p~~~~~----------~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~--~~~~~~~ 224 (264)
T TIGR00446 157 RKDPSRKKN----------WSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK--RPDVVEE 224 (264)
T ss_pred ccChhhhhc----------CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh--CCCcEEe
Confidence 999998763 3689999999999999999999887 79999999999999999999999963 5566654
Q ss_pred cCCCC--CCCccccccccceeeeecccCCCCCCCC
Q 013515 409 TPFPN--GTAEASQFLKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 409 ~~~~~--~~~~~~~~~~~~~~~f~p~~~~~~g~~~ 441 (441)
..... |...........++|+.|+.+.+.|+|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~ 259 (264)
T TIGR00446 225 LPKGDEFFGANKGKEEVKGALRVFPQIYDCEGFFV 259 (264)
T ss_pred ccCCcccccccccccccCCeEEECCCCCCCCcEEE
Confidence 21111 1111100011234899999999999995
No 12
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.8e-44 Score=348.04 Aligned_cols=385 Identities=37% Similarity=0.536 Sum_probs=294.4
Q ss_pred HHHHHHHHHHccChhhHHHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccccchHHHHHHHHHHHH
Q 013515 37 EAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDIL 116 (441)
Q Consensus 37 ~A~~vL~~v~~~~~~~~~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~~~~~lL~l~~yql~ 116 (441)
.|+++|..+.... ++++.+.++.+.++...++++|..+++++.+||.+++.+....-..........+..|+++
T Consensus 3 ~~~~~l~~~~~~~------~s~k~l~~~s~~q~~k~~l~~v~~~~k~r~~l~~i~~d~~~~~~~~~~~~~~~~~l~~~ll 76 (413)
T KOG2360|consen 3 EAAEILRDVEKKE------GSIKMLVYESSKQNPKRTLALVCETLKYRPVLDEILEDSELKDAKMLARLVHMVVLVHDLL 76 (413)
T ss_pred cchhhhhhHHhhh------hhHHHHHHhhhccchHHHHHHHHHHHhhhHHHHHHHhcchhhhhhhhcccccceeehhhhh
Confidence 4678888886642 4566666766667889999999999999999999999754322111111123346789999
Q ss_pred hcCCCCch-----HHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHhhCCCCCCCCceEEecCCCCCHHHHHHHHcc-
Q 013515 117 FGQEISLV-----GDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK- 190 (441)
Q Consensus 117 f~~~ip~~-----~~i~~~v~~~k~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~- 190 (441)
|....+.. .++.+.....+..+..........+.....+++.- ..+ .+.|.|+|+||++.+.++.+..|..
T Consensus 77 ~~~~~~~~~~~~~~el~~~~~~~~~e~~~~~v~~~~k~~~~~~~~l~~--t~~-~~~pr~vRINtlk~~~~e~~~~L~~e 153 (413)
T KOG2360|consen 77 LSKIKRSGLMIDKRELKVIRLRLILRLKIETVMLKKKRKVKSLRELKL--TMK-IPLPRYVRINTLKGTTDEALDYLDYE 153 (413)
T ss_pred hcccccccceeccchhhhhhHHHHhhhHHHHHHHHhhhhHHHHHHhhc--cCC-CCCceeEEeecccCchhhhhhhhhhh
Confidence 86544322 24445544444433332222222333333333332 123 5889999999999999888887765
Q ss_pred c---------CcccccCCCCCeEEeCCCCCCCCChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHH
Q 013515 191 Q---------FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261 (441)
Q Consensus 191 ~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~ 261 (441)
+ ..+..|++++..+.++....+..+++|++|.+++||.+|++++++|+|.+|+.|+|+||+||.||+|++.
T Consensus 154 ~~~~~~~l~p~~~~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~ 233 (413)
T KOG2360|consen 154 KWKMITELKPDEFYVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAA 233 (413)
T ss_pred hhhhhhhcCCcceeccccchhhcccCCCcceeeccccccCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHH
Confidence 1 1234577788888887666788899999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCC
Q 013515 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHA 341 (441)
Q Consensus 262 ~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~ 341 (441)
.+.+.|+|+|+|.+..|.+.++..+...|+.++....+|+... ..+..+..+..||+||+|||+|+..|.-.+.-
T Consensus 234 i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t-~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~---- 308 (413)
T KOG2360|consen 234 IMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT-ATPEKFRDVTYILVDPSCSGSGMVSRQDEDPG---- 308 (413)
T ss_pred HhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC-CCcccccceeEEEeCCCCCCCccccceeeccC----
Confidence 9999999999999999999999999999999999999999987 45555788899999999999999865422211
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChhcHHHHHHHhchhcCCC-eEEec--CCCCCCCcc
Q 013515 342 SGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFG-FQLAT--PFPNGTAEA 418 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~-~~~~~--~~~~~~~~~ 418 (441)
......+++..|...|..++.||+.+++...+||||||++.+|||.||++.|.. ++. +.+.. +.|.|+++|
T Consensus 309 ----~e~~~~~rL~~L~~fq~~~~~hal~fp~~k~vvystcs~~reene~vv~d~l~~--~p~~~~l~~kK~~p~w~~rg 382 (413)
T KOG2360|consen 309 ----AETESPERLENLQSFQIRILKHALTFPNLKRLVYSTCSLHREENEQVVQEVLQQ--NPDAKRLAPKKVLPAWPHRG 382 (413)
T ss_pred ----CCcccHHHHHHHHHHHHHHHHHHhcCCchhheeeecchhhhhhhhHHHHHHHhh--ChhHhhhchhhcchhhhhcC
Confidence 112357999999999999999999998889999999999999999999999964 344 44555 789999998
Q ss_pred ccc--cccceeeeecccCCCCCCCC
Q 013515 419 SQF--LKALSIYFEPIQWKTKKAFL 441 (441)
Q Consensus 419 ~~~--~~~~~~~f~p~~~~~~g~~~ 441 (441)
.+. .-..++|..|..+-+.|+|+
T Consensus 383 ~~~~~~~e~~lr~~p~~~~~~gffv 407 (413)
T KOG2360|consen 383 LSTFSGAEHCLRASPKSTLTIGFFV 407 (413)
T ss_pred CccccccccceecccCCCCcceEEE
Confidence 221 11246999999999999984
No 13
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-36 Score=288.75 Aligned_cols=197 Identities=29% Similarity=0.384 Sum_probs=161.5
Q ss_pred cccCCCCCeEEeCCCC---------CCCCChhh-----hcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHH
Q 013515 195 QKDDLVPDLLILPPGC---------DLHVHPLI-----VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLA 260 (441)
Q Consensus 195 ~~~~~~~~~~~~~~~~---------~l~~~~~~-----~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la 260 (441)
...+|.|+.+.++... .+...+.| ..|.++.||.+|++++.+|+++||++|||||||||+||+++.
T Consensus 95 ~~~p~~p~~~a~~~~~~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLL 174 (375)
T KOG2198|consen 95 FELPWYPDNLAFEKDVKLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLL 174 (375)
T ss_pred ccCCCCcccchhhhcCcccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHH
Confidence 3457777777665432 12223333 458899999999999999999999999999999999999998
Q ss_pred HHhcC---CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC------CCCCCccEEEEcCCCCCCccccc
Q 013515 261 ALMKG---KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------PAYSEVRAILLDPSCSGSGTAAE 331 (441)
Q Consensus 261 ~~~~~---~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------~~~~~fD~Il~DpPCSg~G~~~~ 331 (441)
+.+.. .|.|+|+|.+..|+..+.+.+++....++.+...|+...+... ..+..||+||+|+||||.|++++
T Consensus 175 eal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk 254 (375)
T KOG2198|consen 175 EALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRK 254 (375)
T ss_pred HHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCccccc
Confidence 87753 3699999999999999999998888778888888877766431 13467999999999999999999
Q ss_pred ccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchh
Q 013515 332 RLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIA 400 (441)
Q Consensus 332 ~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~ 400 (441)
.+++.- ..|+..+-..|..+|.+||.+++++++ ||.|||||||++|.|||+||+++|+..
T Consensus 255 ~~~i~~---------~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~ 315 (375)
T KOG2198|consen 255 NPNIWK---------EGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKV 315 (375)
T ss_pred CchHhh---------hhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHh
Confidence 888721 114455556899999999999999998 899999999999999999999999753
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.66 E-value=1.1e-15 Score=155.08 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=117.8
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 292 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-- 292 (441)
..++++|+|..|..+..++..+. +|.+|||+|||+|+++++++. .+..+|+++|+++.+++.+++|++.+|++
T Consensus 197 ~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~ 271 (396)
T PRK15128 197 QGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLS 271 (396)
T ss_pred ccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCC
Confidence 56789999999988777776654 588999999999999886653 45579999999999999999999999984
Q ss_pred cEEEEeccCCCCCCCCC-CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 013515 293 NIEVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 371 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~~-~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~ 371 (441)
+++++++|+.++..... ..++||.|++|||+... +.+.+.........++..|.++
T Consensus 272 ~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~-----------------------~k~~l~~~~~~y~~l~~~a~~l 328 (396)
T PRK15128 272 KAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVE-----------------------NKSQLMGACRGYKDINMLAIQL 328 (396)
T ss_pred cEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCC-----------------------ChHHHHHHHHHHHHHHHHHHHH
Confidence 79999999987642210 12579999999997431 1233444444567788889898
Q ss_pred CC-CcEEEEEcCCCCChh--cHHHHHHHh
Q 013515 372 PG-VERVVYSTCSIHQVE--NEDVIKSVL 397 (441)
Q Consensus 372 ~~-~G~lvYsTCS~~~~E--Ne~vV~~~l 397 (441)
++ +|.|+++|||-+-.+ =.++|.+..
T Consensus 329 Lk~gG~lv~~scs~~~~~~~f~~~v~~aa 357 (396)
T PRK15128 329 LNPGGILLTFSCSGLMTSDLFQKIIADAA 357 (396)
T ss_pred cCCCeEEEEEeCCCcCCHHHHHHHHHHHH
Confidence 87 799999999966544 344554444
No 15
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=5.9e-15 Score=137.60 Aligned_cols=153 Identities=20% Similarity=0.266 Sum_probs=126.9
Q ss_pred hhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEE
Q 013515 218 IVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEV 296 (441)
Q Consensus 218 ~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~ 296 (441)
++-+--.+-.+.+.+++..+++.||++|+|+|.|+|..|..||..+++.|+|+.+|+.++.++.|++|++..|+.+ |++
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE
Confidence 5555556666778899999999999999999999999999999999999999999999999999999999999966 999
Q ss_pred EeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-Cc
Q 013515 297 LHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VE 375 (441)
Q Consensus 297 ~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G 375 (441)
..+|+.+.... ..||+|++|-| ++| +.|.++.+.++ ||
T Consensus 151 ~~~Dv~~~~~~----~~vDav~LDmp------------------------~PW-------------~~le~~~~~Lkpgg 189 (256)
T COG2519 151 KLGDVREGIDE----EDVDAVFLDLP------------------------DPW-------------NVLEHVSDALKPGG 189 (256)
T ss_pred Eeccccccccc----cccCEEEEcCC------------------------ChH-------------HHHHHHHHHhCCCc
Confidence 99999886654 47999999999 223 67899988877 44
Q ss_pred -EEEEEcCCCCChhcHHHHHHHhchhcCCCeEEecCCCCCCCcc
Q 013515 376 -RVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEA 418 (441)
Q Consensus 376 -~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~~ 418 (441)
.++|+.|. ++|++.++..+..+|.-.+++....++.
T Consensus 190 ~~~~y~P~v-------eQv~kt~~~l~~~g~~~ie~~E~l~R~~ 226 (256)
T COG2519 190 VVVVYSPTV-------EQVEKTVEALRERGFVDIEAVETLVRRW 226 (256)
T ss_pred EEEEEcCCH-------HHHHHHHHHHHhcCccchhhheeeehee
Confidence 78999998 8888888766666776655544433333
No 16
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.59 E-value=3.8e-15 Score=149.39 Aligned_cols=148 Identities=21% Similarity=0.230 Sum_probs=122.5
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC--C
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--A 292 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~--~ 292 (441)
..+.++|.|..|..+...+...+. |.+|||+||.||++|+++|. +++.+|+++|+|...++.+++|++.+|+ +
T Consensus 194 ~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~ 268 (393)
T COG1092 194 VDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGD 268 (393)
T ss_pred CCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCcc
Confidence 346789999999999998888775 99999999999999998875 4667999999999999999999999998 3
Q ss_pred cEEEEeccCCCCCCCC-CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCC
Q 013515 293 NIEVLHGDFLNLDPKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSF 371 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~-~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~ 371 (441)
.+.++++|+.++.... .+..+||+|++|||-.+ + +++......+-...++..|+++
T Consensus 269 ~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~-----r------------------~k~~~~~~~rdy~~l~~~~~~i 325 (393)
T COG1092 269 RHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFA-----R------------------SKKQEFSAQRDYKDLNDLALRL 325 (393)
T ss_pred ceeeehhhHHHHHHHHHhcCCcccEEEECCcccc-----c------------------CcccchhHHHHHHHHHHHHHHH
Confidence 5889999998876432 22358999999999432 2 2333356677788999999998
Q ss_pred CC-CcEEEEEcCCCCChhcH
Q 013515 372 PG-VERVVYSTCSIHQVENE 390 (441)
Q Consensus 372 ~~-~G~lvYsTCS~~~~ENe 390 (441)
++ +|+++.||||-+-...+
T Consensus 326 L~pgG~l~~~s~~~~~~~~~ 345 (393)
T COG1092 326 LAPGGTLVTSSCSRHFSSDL 345 (393)
T ss_pred cCCCCEEEEEecCCccCHHH
Confidence 87 79999999998877774
No 17
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.57 E-value=1.1e-14 Score=138.11 Aligned_cols=142 Identities=22% Similarity=0.296 Sum_probs=107.1
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLN 303 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~ 303 (441)
+..+.+.+++..+++.||++||+.|.|+|..|..|+..+++.|+|+.+|.++++++.+++|++.+|+ ++|++.+.|+..
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 3345566888899999999999999999999999999999999999999999999999999999999 589999999965
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC-C-Cc-EEEEE
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP-G-VE-RVVYS 380 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~-~-~G-~lvYs 380 (441)
-.........||.|++|-|. | | ..+.++.+.| + || ..+||
T Consensus 104 ~g~~~~~~~~~DavfLDlp~---------P---------------w-------------~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 104 EGFDEELESDFDAVFLDLPD---------P---------------W-------------EAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp G--STT-TTSEEEEEEESSS---------G---------------G-------------GGHHHHHHHE-EEEEEEEEEE
T ss_pred ccccccccCcccEEEEeCCC---------H---------------H-------------HHHHHHHHHHhcCCceEEEEC
Confidence 33211112579999999992 2 2 4467777766 4 55 78899
Q ss_pred cCCCCChhcHHHHHHHhchhcCCCeEEecC
Q 013515 381 TCSIHQVENEDVIKSVLPIAMSFGFQLATP 410 (441)
Q Consensus 381 TCS~~~~ENe~vV~~~l~~~~~~~~~~~~~ 410 (441)
.|- +||.+.++..+..+|..++.
T Consensus 147 P~i-------eQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 147 PCI-------EQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp SSH-------HHHHHHHHHHHHTTEEEEEE
T ss_pred CCH-------HHHHHHHHHHHHCCCeeeEE
Confidence 997 88888887666677765543
No 18
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.55 E-value=7.5e-15 Score=141.93 Aligned_cols=144 Identities=22% Similarity=0.257 Sum_probs=105.8
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC--C
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--A 292 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~--~ 292 (441)
..+.+.|+|..|.....++.... .|.+|||++|.+|+++++.+. +++.+|+++|.|...++.+++|++.+|+ +
T Consensus 100 ~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~ 174 (286)
T PF10672_consen 100 TDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLD 174 (286)
T ss_dssp SSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCT
T ss_pred CCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 45788999999999999988875 488999999999999998764 5667899999999999999999999997 4
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 013515 293 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~ 372 (441)
.++++.+|+.+........++||+|++|||..+-|. +. +.+-..+++..|++++
T Consensus 175 ~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~--------------------~~------~~~~y~~L~~~a~~ll 228 (286)
T PF10672_consen 175 RHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSK--------------------FD------LERDYKKLLRRAMKLL 228 (286)
T ss_dssp CEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESST--------------------CE------HHHHHHHHHHHHHHTE
T ss_pred ceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCH--------------------HH------HHHHHHHHHHHHHHhc
Confidence 799999998764422111268999999999653221 11 2245678899999988
Q ss_pred C-CcEEEEEcCCCCChhc
Q 013515 373 G-VERVVYSTCSIHQVEN 389 (441)
Q Consensus 373 ~-~G~lvYsTCS~~~~EN 389 (441)
+ ||.|+.||||.+-..+
T Consensus 229 ~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 229 KPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp EEEEEEEEEE--TTS-HH
T ss_pred CCCCEEEEEcCCcccCHH
Confidence 7 7999999999888775
No 19
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.52 E-value=8.4e-14 Score=151.65 Aligned_cols=147 Identities=14% Similarity=0.183 Sum_probs=116.3
Q ss_pred ChhhhcCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 013515 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-- 292 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-- 292 (441)
....+.|.|..|.....++..+. .|.+|||+|||+|+++++++.. +..+|+++|+|+.+++.+++|++.+|++
T Consensus 515 ~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~ 589 (702)
T PRK11783 515 TDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGR 589 (702)
T ss_pred CCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 45678999999988888877665 4889999999999999999874 4468999999999999999999999985
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 013515 293 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~ 372 (441)
+++++++|+.++.... ..+||.|++|||+.+.+- . .+++......+..++..+.+++
T Consensus 590 ~v~~i~~D~~~~l~~~--~~~fDlIilDPP~f~~~~---~------------------~~~~~~~~~~y~~l~~~a~~lL 646 (702)
T PRK11783 590 QHRLIQADCLAWLKEA--REQFDLIFIDPPTFSNSK---R------------------MEDSFDVQRDHVALIKDAKRLL 646 (702)
T ss_pred ceEEEEccHHHHHHHc--CCCcCEEEECCCCCCCCC---c------------------cchhhhHHHHHHHHHHHHHHHc
Confidence 7999999987654222 157999999999875431 0 1122234455778888898887
Q ss_pred C-CcEEEEEcCCCCChhc
Q 013515 373 G-VERVVYSTCSIHQVEN 389 (441)
Q Consensus 373 ~-~G~lvYsTCS~~~~EN 389 (441)
+ ||.+++++|+-+....
T Consensus 647 ~~gG~l~~~~~~~~~~~~ 664 (702)
T PRK11783 647 RPGGTLYFSNNKRGFKMD 664 (702)
T ss_pred CCCCEEEEEeCCccCChh
Confidence 7 7999999999776655
No 20
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.51 E-value=5.6e-13 Score=119.34 Aligned_cols=137 Identities=22% Similarity=0.312 Sum_probs=109.7
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
.+-..+....|.+.||++++|+|||+|+.|..++ ++++.++|+|+|.++++++..++|++++|++|++++.+|+.+...
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc
Confidence 4557788888999999999999999999999999 667889999999999999999999999999999999999987765
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
.. .+||+|++.-. |.+ ..+|+.++..++ ||+||--.-
T Consensus 99 ~~---~~~daiFIGGg----~~i--------------------------------~~ile~~~~~l~~ggrlV~nai--- 136 (187)
T COG2242 99 DL---PSPDAIFIGGG----GNI--------------------------------EEILEAAWERLKPGGRLVANAI--- 136 (187)
T ss_pred CC---CCCCEEEECCC----CCH--------------------------------HHHHHHHHHHcCcCCeEEEEee---
Confidence 43 47999997432 211 478999999877 788887433
Q ss_pred ChhcHHHHHHHhchhcCCCe-EEec
Q 013515 386 QVENEDVIKSVLPIAMSFGF-QLAT 409 (441)
Q Consensus 386 ~~ENe~vV~~~l~~~~~~~~-~~~~ 409 (441)
..||+....+.++ +.++ +++.
T Consensus 137 tlE~~~~a~~~~~---~~g~~ei~~ 158 (187)
T COG2242 137 TLETLAKALEALE---QLGGREIVQ 158 (187)
T ss_pred cHHHHHHHHHHHH---HcCCceEEE
Confidence 3566666666653 4555 5433
No 21
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=3e-13 Score=138.27 Aligned_cols=133 Identities=23% Similarity=0.358 Sum_probs=104.1
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
..+...++..++++|||+.||.|++|+++|.. ..+|+|+|+++++++.+++|++.+|++|+++..+|+..+......
T Consensus 283 ~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 283 ETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 34445677788999999999999999999965 479999999999999999999999999999999999988866432
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChhcH
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 390 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ENe 390 (441)
...||.|++|||.+|.+ ..+++...++ ++-+|||++| |.
T Consensus 360 ~~~~d~VvvDPPR~G~~----------------------------------~~~lk~l~~~-~p~~IvYVSC------NP 398 (432)
T COG2265 360 GYKPDVVVVDPPRAGAD----------------------------------REVLKQLAKL-KPKRIVYVSC------NP 398 (432)
T ss_pred cCCCCEEEECCCCCCCC----------------------------------HHHHHHHHhc-CCCcEEEEeC------CH
Confidence 35789999999998875 1344444443 4578999999 66
Q ss_pred HHHHHHhchhcCCCeEE
Q 013515 391 DVIKSVLPIAMSFGFQL 407 (441)
Q Consensus 391 ~vV~~~l~~~~~~~~~~ 407 (441)
.-..+-+....+.+.++
T Consensus 399 ~TlaRDl~~L~~~gy~i 415 (432)
T COG2265 399 ATLARDLAILASTGYEI 415 (432)
T ss_pred HHHHHHHHHHHhCCeEE
Confidence 66665554333445433
No 22
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.47 E-value=7.2e-13 Score=132.22 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=100.9
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
+..++.++++++|+.|||.|||+|+.+..++.. ...|+++|+++.+++.++.|++.+|+.++.+.++|+.+++...
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~- 246 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS- 246 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc-
Confidence 344455667889999999999999998876553 3689999999999999999999999988889999999877543
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
++||.|++||||....... ...+..++.++|..+.+.++ ||+++|.+++-.
T Consensus 247 --~~~D~Iv~dPPyg~~~~~~-----------------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 247 --ESVDAIATDPPYGRSTTAA-----------------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred --CCCCEEEECCCCcCccccc-----------------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 6799999999985422110 01234567889999998776 799999988743
No 23
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.46 E-value=3e-13 Score=134.08 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=73.7
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
.++..++.+|||+|||+|..++.++.. ..+|+|+|+++.+++.+++|++.+|+++++++++|+.++.... ...||
T Consensus 168 ~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~--~~~~D 242 (315)
T PRK03522 168 WVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ--GEVPD 242 (315)
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc--CCCCe
Confidence 444446789999999999999999984 3689999999999999999999999988999999998765322 14699
Q ss_pred EEEEcCCCCCCc
Q 013515 316 AILLDPSCSGSG 327 (441)
Q Consensus 316 ~Il~DpPCSg~G 327 (441)
.|++|||++|.+
T Consensus 243 ~Vv~dPPr~G~~ 254 (315)
T PRK03522 243 LVLVNPPRRGIG 254 (315)
T ss_pred EEEECCCCCCcc
Confidence 999999987754
No 24
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=99.45 E-value=7.2e-13 Score=113.69 Aligned_cols=113 Identities=20% Similarity=0.273 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccc----cchHH
Q 013515 32 YFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW----KRQEE 106 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~----~~~~~ 106 (441)
|++|..|+++|+++..++.+.+ .+...... .. ++.|++++++|||||+|++..||++|++ ++++++ ...+.
T Consensus 1 ~~~R~~A~~~L~~v~~~~~~~~~~l~~~~~~-~~-~~~d~~~~~~lv~g~~r~~~~ld~~i~~--~l~~~~~~~~~~~~~ 76 (126)
T cd00620 1 MNARSTAAEVLRDVLQRGASLNAVLSALQKK-DK-SDRDRGLATELVYGTLRWLALLDWIINP--LLKKPDVGKDPDVRN 76 (126)
T ss_pred CCHHHHHHHHHHHHHHcCCcHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhCCCccccCHHHHH
Confidence 4679999999999988554433 33322111 12 4578999999999999999999999997 566543 23578
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhhHH---HHHHHHHHHHHc
Q 013515 107 LVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (441)
Q Consensus 107 lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~---~~~~l~~~~~~~ 149 (441)
+|++|+||++|++ +|+++.+|++|+..|.. -...|.|.+++.
T Consensus 77 iLr~a~~el~~~~-~p~~avvneaVelak~~~~~~~~~fVNaVLr~ 121 (126)
T cd00620 77 LLRLGLYQLLYLD-VPPHAAVDETVEIAKIRKDLGRAGLVNAVLRR 121 (126)
T ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 9999999999997 99999999999998752 224566666654
No 25
>PRK14967 putative methyltransferase; Provisional
Probab=99.45 E-value=1.8e-12 Score=122.27 Aligned_cols=142 Identities=20% Similarity=0.298 Sum_probs=97.9
Q ss_pred CcccccchhhHHHHHHh---CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q 013515 221 GCVFLQGKASSMVAAAL---APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL 297 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l---~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~ 297 (441)
|.|..|..+ .+++..+ .+.++++|||+|||+|..+..++.. +.++|+++|+++.+++.+++|++.+|. ++.++
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~ 89 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDVR 89 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEE
Confidence 455566543 4444443 4678899999999999999998875 336999999999999999999999887 58889
Q ss_pred eccCCCCCCCCCCCCCccEEEEcCCCCC---CcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-
Q 013515 298 HGDFLNLDPKDPAYSEVRAILLDPSCSG---SGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG- 373 (441)
Q Consensus 298 ~~D~~~~~~~~~~~~~fD~Il~DpPCSg---~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~- 373 (441)
++|+...... ++||.|++|||... .+...+.++..|.. . ......+..++..+.++++
T Consensus 90 ~~d~~~~~~~----~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~----------~----~~~~~~~~~~l~~a~~~Lk~ 151 (223)
T PRK14967 90 RGDWARAVEF----RPFDVVVSNPPYVPAPPDAPPSRGPARAWDA----------G----PDGRAVLDRLCDAAPALLAP 151 (223)
T ss_pred ECchhhhccC----CCeeEEEECCCCCCCCcccccccChhHhhhC----------C----CcHHHHHHHHHHHHHHhcCC
Confidence 9998764321 57999999998542 22222222221110 0 0122456788999998887
Q ss_pred CcEEEEEcCCC
Q 013515 374 VERVVYSTCSI 384 (441)
Q Consensus 374 ~G~lvYsTCS~ 384 (441)
||.+++.+.+.
T Consensus 152 gG~l~~~~~~~ 162 (223)
T PRK14967 152 GGSLLLVQSEL 162 (223)
T ss_pred CcEEEEEEecc
Confidence 78777644333
No 26
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.44 E-value=8.4e-13 Score=136.90 Aligned_cols=90 Identities=29% Similarity=0.424 Sum_probs=75.0
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-CCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-AYS 312 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-~~~ 312 (441)
...+++.+|++|||+|||+|..++.++... .+|+|+|+++.+++.+++|++.+|+++++++++|+.+.....+ ...
T Consensus 290 l~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~ 366 (443)
T PRK13168 290 LEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALG 366 (443)
T ss_pred HHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcC
Confidence 345667789999999999999999998873 6899999999999999999999999999999999976432110 014
Q ss_pred CccEEEEcCCCCCC
Q 013515 313 EVRAILLDPSCSGS 326 (441)
Q Consensus 313 ~fD~Il~DpPCSg~ 326 (441)
+||.|++|||++|.
T Consensus 367 ~fD~Vi~dPPr~g~ 380 (443)
T PRK13168 367 GFDKVLLDPPRAGA 380 (443)
T ss_pred CCCEEEECcCCcCh
Confidence 69999999998763
No 27
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.44 E-value=1.9e-12 Score=119.91 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=99.7
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP 306 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~ 306 (441)
+...++...+++.+|++|||+|||+|..+..++..+++.++|+++|+++.+++.+++|++.+|+ +++.++.+|+.+..+
T Consensus 27 ~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~ 106 (198)
T PRK00377 27 EIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILF 106 (198)
T ss_pred HHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHh
Confidence 3455556678899999999999999999999998877668999999999999999999999994 789999999876533
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
... ..||.|+++.. .. + ...++..+.+.++ +|.+|+.+|++
T Consensus 107 ~~~--~~~D~V~~~~~---~~------~--------------------------~~~~l~~~~~~LkpgG~lv~~~~~~- 148 (198)
T PRK00377 107 TIN--EKFDRIFIGGG---SE------K--------------------------LKEIISASWEIIKKGGRIVIDAILL- 148 (198)
T ss_pred hcC--CCCCEEEECCC---cc------c--------------------------HHHHHHHHHHHcCCCcEEEEEeecH-
Confidence 221 57999998531 00 0 1356778888777 78999888854
Q ss_pred ChhcHHHHHHHh
Q 013515 386 QVENEDVIKSVL 397 (441)
Q Consensus 386 ~~ENe~vV~~~l 397 (441)
|+...+...|
T Consensus 149 --~~~~~~~~~l 158 (198)
T PRK00377 149 --ETVNNALSAL 158 (198)
T ss_pred --HHHHHHHHHH
Confidence 3444455555
No 28
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.44 E-value=1.7e-12 Score=121.75 Aligned_cols=100 Identities=22% Similarity=0.251 Sum_probs=83.5
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
|....+......+...+++++|++|||+|||+|..+..++...+..++|+++|+++.+++.++++++++|++|++++++|
T Consensus 57 ~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 57 GQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred CCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 33333333345666778899999999999999999999999876668899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccEEEEcCCC
Q 013515 301 FLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
+....... ..||+|++|+++
T Consensus 137 ~~~~~~~~---~~fD~Ii~~~~~ 156 (215)
T TIGR00080 137 GTQGWEPL---APYDRIYVTAAG 156 (215)
T ss_pred cccCCccc---CCCCEEEEcCCc
Confidence 97654332 579999999875
No 29
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.43 E-value=9.9e-13 Score=118.77 Aligned_cols=120 Identities=19% Similarity=0.307 Sum_probs=94.2
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
|.++.+++..+...++.+|||+|||+|..++.++... +..+|+++|+++.+++.+++|++.+++.+++++..|..+...
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~ 95 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP 95 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 5688888888877788999999999999999999874 446899999999999999999999999879999999876544
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
. .+||.|+++||....+ ......+.+++..|.++|+ +|.++
T Consensus 96 ~----~~fD~Iv~NPP~~~~~---------------------------~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 96 D----GKFDLIVSNPPFHAGG---------------------------DDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp T----TCEEEEEE---SBTTS---------------------------HCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred c----cceeEEEEccchhccc---------------------------ccchhhHHHHHHHHHHhccCCCEEE
Confidence 2 7899999999942211 1123455788999988887 67553
No 30
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.43 E-value=1.6e-12 Score=108.42 Aligned_cols=110 Identities=21% Similarity=0.325 Sum_probs=83.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
||.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...+. ++|+++++|+ ...... ...||.|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~--~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF--LEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT--SSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc--CCCCCEEEE
Confidence 68899999999999999999954 458999999999999999999976665 7899999999 322222 257999997
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
+. .+....+ .. ..+.++|+.+.+.++ ||++|.+||
T Consensus 77 ~~-~~~~~~~--------------------------~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 77 SG-FTLHFLL--------------------------PL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp CS-GSGGGCC--------------------------HH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CC-Ccccccc--------------------------ch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 66 2111111 11 344677888888776 799999998
No 31
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=1.3e-12 Score=122.92 Aligned_cols=123 Identities=24% Similarity=0.342 Sum_probs=97.3
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 308 (441)
-....+..+.+.+|++|||+|||||..+..+++..+ .++|+++|+|+.||+.+++.+...|..+|+++++|+.++|..+
T Consensus 39 Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D 117 (238)
T COG2226 39 WRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPD 117 (238)
T ss_pred HHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCC
Confidence 344556666667999999999999999999999987 7999999999999999999999999888999999999999877
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCCh
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQV 387 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ 387 (441)
.+||+|.+ + .| +|+-+|+ .+.|+.+.+.+| ||+++- +.++.-
T Consensus 118 ---~sFD~vt~---~--fg-lrnv~d~--------------------------~~aL~E~~RVlKpgG~~~v--le~~~p 160 (238)
T COG2226 118 ---NSFDAVTI---S--FG-LRNVTDI--------------------------DKALKEMYRVLKPGGRLLV--LEFSKP 160 (238)
T ss_pred ---CccCEEEe---e--eh-hhcCCCH--------------------------HHHHHHHHHhhcCCeEEEE--EEcCCC
Confidence 78999975 2 33 2333332 367888999887 564432 344444
Q ss_pred hc
Q 013515 388 EN 389 (441)
Q Consensus 388 EN 389 (441)
++
T Consensus 161 ~~ 162 (238)
T COG2226 161 DN 162 (238)
T ss_pred Cc
Confidence 44
No 32
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=4.1e-12 Score=113.40 Aligned_cols=130 Identities=20% Similarity=0.318 Sum_probs=101.3
Q ss_pred cccchhhHHHHH--HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 013515 224 FLQGKASSMVAA--ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 301 (441)
Q Consensus 224 ~~Qd~ss~l~~~--~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~ 301 (441)
+.-+.++.++.. +.+.-.|..|+|+|||+|..++..+.+ +..+|+|+|+++++++.+++|..++ ..+|.++++|+
T Consensus 26 Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv 102 (198)
T COG2263 26 TPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADV 102 (198)
T ss_pred CChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhh-CCceEEEEcch
Confidence 333444444433 334556889999999999988876654 4579999999999999999999994 46899999999
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 013515 302 LNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYST 381 (441)
Q Consensus 302 ~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsT 381 (441)
.++. ..||.+++||| .|+.++++|. ..|..|++. +.+|||
T Consensus 103 ~~~~------~~~dtvimNPP---FG~~~rhaDr---------------------------~Fl~~Ale~---s~vVYs- 142 (198)
T COG2263 103 SDFR------GKFDTVIMNPP---FGSQRRHADR---------------------------PFLLKALEI---SDVVYS- 142 (198)
T ss_pred hhcC------CccceEEECCC---CccccccCCH---------------------------HHHHHHHHh---hheEEE-
Confidence 9876 56899999999 6777777663 567777765 578995
Q ss_pred CCCCChhcHHHHHHHhc
Q 013515 382 CSIHQVENEDVIKSVLP 398 (441)
Q Consensus 382 CS~~~~ENe~vV~~~l~ 398 (441)
+|..-+++-+.++.+
T Consensus 143 --iH~a~~~~f~~~~~~ 157 (198)
T COG2263 143 --IHKAGSRDFVEKFAA 157 (198)
T ss_pred --eeccccHHHHHHHHH
Confidence 677778888888874
No 33
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.41 E-value=2.2e-12 Score=133.49 Aligned_cols=90 Identities=32% Similarity=0.404 Sum_probs=74.5
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-CCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-AYS 312 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-~~~ 312 (441)
...+++.++++|||+|||+|..++.++... .+|+|+|+++.+++.+++|++.+|++|++++.+|+.+...... ...
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 361 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQ 361 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCC
Confidence 345567788999999999999999999863 5899999999999999999999999999999999976432110 014
Q ss_pred CccEEEEcCCCCCC
Q 013515 313 EVRAILLDPSCSGS 326 (441)
Q Consensus 313 ~fD~Il~DpPCSg~ 326 (441)
+||.|++|||++|.
T Consensus 362 ~~D~vi~dPPr~G~ 375 (431)
T TIGR00479 362 IPDVLLLDPPRKGC 375 (431)
T ss_pred CCCEEEECcCCCCC
Confidence 69999999998754
No 34
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.40 E-value=4.5e-12 Score=121.57 Aligned_cols=127 Identities=16% Similarity=0.161 Sum_probs=94.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~Dp 321 (441)
+.+|||+|||+|..++.++...+ ..+|+++|+++.+++.+++|++.+|. +++++|+.+...... .++||.|++||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~~~~-~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALPTAL-RGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcchhc-CCCEeEEEECC
Confidence 46899999999999999988754 36899999999999999999998773 678899876432211 15799999999
Q ss_pred CCCCCccccc-ccCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 322 SCSGSGTAAE-RLDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 322 PCSg~G~~~~-~pd~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
||...+.+.+ .|+.+..+ ....+ ......++.++..|.++++ +|.+++.+..
T Consensus 162 Py~~~~~~~~~~~e~~~~e----------p~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHE----------PRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred CCCCchhhhcCCHHHHhCC----------CHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 9998876543 23322110 01111 2346678999999999887 7888887653
No 35
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.39 E-value=8.3e-12 Score=113.62 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=108.3
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
...+.++...+...++.+|||+|||+|..+..++... .+|+++|+++.+++.++++++.+++ +++++.+|+.+..
T Consensus 5 ~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~- 79 (179)
T TIGR00537 5 AEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV- 79 (179)
T ss_pred CccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-
Confidence 3445777777777788999999999999999998762 3899999999999999999998886 6888999986643
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
. ++||.|+++||+....-..+..+. ..............+..+|..+.++++ +|.+++++++..
T Consensus 80 -~---~~fD~Vi~n~p~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 80 -R---GKFDVILFNPPYLPLEDDLRRGDW-----------LDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred -C---CcccEEEECCCCCCCcchhcccch-----------hhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 1 579999999998533211000000 000000000123446788999988887 799988877654
Q ss_pred ChhcHHHHHHHhchhcCCCeEEec
Q 013515 386 QVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 386 ~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
++..+.++|+ +.+|+...
T Consensus 145 ---~~~~~~~~l~---~~gf~~~~ 162 (179)
T TIGR00537 145 ---GEPDTFDKLD---ERGFRYEI 162 (179)
T ss_pred ---ChHHHHHHHH---hCCCeEEE
Confidence 3555556663 34665533
No 36
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.38 E-value=6e-13 Score=112.06 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=88.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
|.+|||+|||+|..+..+++.. ..+++++|+++..++.++.++...+. .+++++++|+.+...... ..+||.|+.|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP-DGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-TT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-CceeEEEEEC
Confidence 6799999999999999999874 58999999999999999999999988 679999999988762211 2789999999
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
||+........ ...+....+++.+.++++ +|.+++.+|
T Consensus 78 pP~~~~~~~~~------------------------~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 78 PPYGPRSGDKA------------------------ALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp -STTSBTT----------------------------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccccccch------------------------hhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99865321110 011155688999999887 789988876
No 37
>PRK00202 nusB transcription antitermination protein NusB; Reviewed
Probab=99.38 E-value=2.9e-12 Score=111.56 Aligned_cols=116 Identities=10% Similarity=0.064 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhccc-cccc----ch
Q 013515 31 AYFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILN-SKWK----RQ 104 (441)
Q Consensus 31 ~~~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~-~~~~----~~ 104 (441)
...+|+.|+++|+++..++.+.+ .+..... ....+..|++|+++|||||+|++..||++|.+ +++ .++. ..
T Consensus 3 r~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~lv~gvlr~~~~lD~ii~~--~l~~~~~~~l~~~~ 79 (137)
T PRK00202 3 RRKAREAAVQALYQWELSGNDIAEIIEAQLL-EEQYDKADPAYFRSLVRGVVENQAELDELISP--YLKDWTLERLDPVE 79 (137)
T ss_pred hHHHHHHHHHHHHHHHccCCCHHHHHHHHHH-hcccchhhHHHHHHHHHHHHHhHHHHHHHHHH--HhcCCCHHHhhHHH
Confidence 45689999999999988555543 3333211 12344578999999999999999999999997 563 3322 24
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHhhHH---HHHHHHHHHHHc
Q 013515 105 EELVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (441)
Q Consensus 105 ~~lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~---~~~~l~~~~~~~ 149 (441)
+.+||+|+||++|++++|.++.++++|+..|.. -..+|.|.+++.
T Consensus 80 ~~iLr~a~~Ell~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~ 127 (137)
T PRK00202 80 RAILRLALYELLFRDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLDK 127 (137)
T ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 789999999999996689999999999998742 123566665554
No 38
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.38 E-value=1.5e-12 Score=123.26 Aligned_cols=122 Identities=25% Similarity=0.338 Sum_probs=81.8
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
.++..+.+.+|++|||+|||+|..+..+++.+++.++|+++|+++.|++.++++++..+..+|+++++|+.+++..+
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d--- 114 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD--- 114 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T---
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC---
Confidence 55666788999999999999999999999888777999999999999999999999999889999999999999765
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcH
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENE 390 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe 390 (441)
++||.|++ +.|. ++-|| +.+.|+...+.++ ||.++..- ++.-+|.
T Consensus 115 ~sfD~v~~-----~fgl-rn~~d--------------------------~~~~l~E~~RVLkPGG~l~ile--~~~p~~~ 160 (233)
T PF01209_consen 115 NSFDAVTC-----SFGL-RNFPD--------------------------RERALREMYRVLKPGGRLVILE--FSKPRNP 160 (233)
T ss_dssp T-EEEEEE-----ES-G-GG-SS--------------------------HHHHHHHHHHHEEEEEEEEEEE--EEB-SSH
T ss_pred CceeEEEH-----HhhH-HhhCC--------------------------HHHHHHHHHHHcCCCeEEEEee--ccCCCCc
Confidence 78999973 3443 32222 1356888888887 67766533 3334453
No 39
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.38 E-value=1.7e-12 Score=130.41 Aligned_cols=91 Identities=26% Similarity=0.372 Sum_probs=64.0
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC----
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---- 308 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~---- 308 (441)
+..++++.++ .|||++||.|.+|+.+|... .+|+|+|+++++++.|++|++.+|++|++++.+++.++....
T Consensus 189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r 264 (352)
T PF05958_consen 189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAR 264 (352)
T ss_dssp HHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-
T ss_pred HHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhH
Confidence 3455666666 89999999999999998763 689999999999999999999999999999988776543210
Q ss_pred ---------CCCCCccEEEEcCCCCCCc
Q 013515 309 ---------PAYSEVRAILLDPSCSGSG 327 (441)
Q Consensus 309 ---------~~~~~fD~Il~DpPCSg~G 327 (441)
.....+|.|++|||.+|.+
T Consensus 265 ~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 265 EFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 0012689999999999876
No 40
>PF01029 NusB: NusB family; InterPro: IPR006027 This domain is found in a number of functionally different proteins: NusB a prokaryotic transcription factor involved in antitermination TIM44, the mitochondrial inner membrane translocase subunit RsmB, the 16S rRNA m5C967 methyltransferase NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site. Previous studies have shown that NusB exhibits an all-helical fold, and that the protein from Escherichia coli forms monomers, while Mycobacterium tuberculosis NusB is a dimer. The functional significance of NusB dimerization is unknown. An N-terminal arginine-rich sequence is the probable RNA binding site, exhibiting aromatic residues as potential stacking partners for the RNA bases. The RNA binding region is hidden in the subunit interface of dimeric NusB proteins, such as NusB from M. tuberculosis, suggesting that such dimers have to undergo a considerable conformational change or dissociate for engagement with RNA. In certain organisms, dimerization may be employed to package NusB in an inactive form until recruitment into antitermination complexes [, ]. The antitermination proteins of E. coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle.; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1SQG_A 1SQF_A 3IMQ_A 3D3C_C 3D3B_A 1EY1_A 1EYV_A 1TZV_A 1TZT_B 1TZX_B ....
Probab=99.37 E-value=4.4e-12 Score=109.94 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHcc-------ChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcc-ccccc
Q 013515 32 YFARREAAKVLRLVLRG-------DARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASIL-NSKWK 102 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~-------~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l-~~~~~ 102 (441)
+++|+.|+++|++++.+ +.+.+ .+... ......+..|++|+++||+|+++++..||++|.+ ++ ++++.
T Consensus 1 ~~aR~~A~q~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~d~~~~~~lv~gv~~~~~~ld~~i~~--~~~~~~~~ 77 (134)
T PF01029_consen 1 RKARELALQALYQVEFNDEEDEEEGQFLDEALEEE-LEESELSEEDRAFARELVYGVLRNKEELDALISK--LLKNWPLE 77 (134)
T ss_dssp HHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH-HHHTTSTHHHHHHHHHHHHHHHHTHHHHHHHHHH--TSTSSTGG
T ss_pred ChHHHHHHHHHHHHHccCCchhhhhhhHHHHHhhc-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCcc
Confidence 57999999999999432 22222 11101 1113456789999999999999999999999998 55 34433
Q ss_pred ----chHHHHHHHHHHHHhcCCCCchHHHHHHHHHhhHHH---HHHHHHHHHHc
Q 013515 103 ----RQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAI---QLALAQLLVRN 149 (441)
Q Consensus 103 ----~~~~lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~~---~~~l~~~~~~~ 149 (441)
..+.+|++|+||++|++++|.++.||++|+.+|... ..+|.|.+++.
T Consensus 78 rl~~~~~~iLrla~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~~ 131 (134)
T PF01029_consen 78 RLPPVDRAILRLAIYELLFLDDIPPHVAINEAVELAKKYGDEKSAGFVNAVLRR 131 (134)
T ss_dssp GSGHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHS-TTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhCCCCcchhHHHHHHH
Confidence 347899999999999977999999999999987541 35566665553
No 41
>TIGR01951 nusB transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10.
Probab=99.37 E-value=4.9e-12 Score=108.92 Aligned_cols=114 Identities=12% Similarity=0.114 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhccc-ccccc----hHH
Q 013515 33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILN-SKWKR----QEE 106 (441)
Q Consensus 33 ~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~-~~~~~----~~~ 106 (441)
.+|..|+++|+++..++.+.+ ++...... ...+.+|++++++|||||+|++..||++|++ +++ .++.. .+.
T Consensus 3 ~~R~~a~~~l~~~~~~~~~~~~~l~~~~~~-~~l~~~d~~~~~~lv~~~lr~~~~ld~~i~~--~~~~~~~~~l~~~~~~ 79 (129)
T TIGR01951 3 KARELALQALYQWELSGNDVEEIIEEFLEE-RELDEEDREYFLELVRGVLENQEEIDELISP--HLKDWSLERLDPVDRA 79 (129)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHhHHHHHHHHHH--HhcCCCHHHhhHHHHH
Confidence 479999999999988555444 33332211 2345678999999999999999999999998 563 33322 477
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhhHH---HHHHHHHHHHHc
Q 013515 107 LVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (441)
Q Consensus 107 lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~---~~~~l~~~~~~~ 149 (441)
+|++|+||++|++++|.++.+|++|+..|.. -..+|.|.++++
T Consensus 80 iLr~a~~el~~~~~~p~~avineaV~lak~~~~~~~~~fVNaVLr~ 125 (129)
T TIGR01951 80 ILRLAAYELLYRPDVPYKVVINEAVELAKKFGDEDSHKFVNGVLDK 125 (129)
T ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCchhhHHHHHHH
Confidence 9999999999996689999999999998752 124566666654
No 42
>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.
Probab=99.36 E-value=6.3e-12 Score=108.42 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHccChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhccccc-c----cchHH
Q 013515 33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSK-W----KRQEE 106 (441)
Q Consensus 33 ~~R~~A~~vL~~v~~~~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~-~----~~~~~ 106 (441)
.+|..|+++|+++..++.+.+ .+..... ....+..|++++++||||++|++..||++|++ ++++. + ...+.
T Consensus 3 ~~R~~a~~~L~~~~~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~lv~gvlr~~~~ld~ii~~--~l~~~~~~~l~~~~~~ 79 (130)
T cd00619 3 RARELAVQALYAWELAPEILAEVVSLLEL-LQYKSKKVLPFALKLVRGVLENIEEIDELIEK--HLRNWSLDRLAIVERA 79 (130)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHhHHHHHHHHHH--HccCCCHHHhhHHHHH
Confidence 479999999999988655443 3332221 11234579999999999999999999999998 56532 1 12477
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhhHH---HHHHHHHHHHHc
Q 013515 107 LVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN 149 (441)
Q Consensus 107 lL~l~~yql~f~~~ip~~~~i~~~v~~~k~~---~~~~l~~~~~~~ 149 (441)
+|++|+||++|++++|.++.+|++|+..|.. -..+|.|.++++
T Consensus 80 iLria~~el~~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~ 125 (130)
T cd00619 80 ILRLAVYELLFLPDVPHPVVINEAIELAKRFGGDDSHKFVNGVLDK 125 (130)
T ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCcchhHHHHHHHH
Confidence 9999999999998789999999999998752 124566666554
No 43
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.36 E-value=1.1e-11 Score=116.75 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=112.3
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK 307 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~ 307 (441)
.+.|.+.+..+....+|||+|||.|..++.+|++..+ .+|+++|+++++.+.+++|++.+++ ++|+++++|+.++...
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 5788888888888999999999999999999998654 8999999999999999999999887 6899999999998865
Q ss_pred CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHH-----HHHHHHHHHhCCCC-CcEEEEEc
Q 013515 308 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSA-----FQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 308 ~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~-----~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
.. ..+||.|+++||.--.|.. .+++ .....+. .-..+++.|.++++ +|++.+.
T Consensus 111 ~~-~~~fD~Ii~NPPyf~~~~~-~~~~------------------~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V- 169 (248)
T COG4123 111 LV-FASFDLIICNPPYFKQGSR-LNEN------------------PLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV- 169 (248)
T ss_pred cc-ccccCEEEeCCCCCCCccc-cCcC------------------hhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE-
Confidence 43 3579999999999887764 1211 1111111 23467888888888 7888653
Q ss_pred CCCCChhcHHHHHHHhc
Q 013515 382 CSIHQVENEDVIKSVLP 398 (441)
Q Consensus 382 CS~~~~ENe~vV~~~l~ 398 (441)
++.|.=.-+-..+.
T Consensus 170 ---~r~erl~ei~~~l~ 183 (248)
T COG4123 170 ---HRPERLAEIIELLK 183 (248)
T ss_pred ---ecHHHHHHHHHHHH
Confidence 66666555555553
No 44
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.35 E-value=1.3e-11 Score=115.61 Aligned_cols=98 Identities=24% Similarity=0.279 Sum_probs=83.8
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
|....+..-...+...+++++|++|||+|||+|+.|..++..++..++|+++|+++++++.++++++.+|+.+|+++++|
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd 135 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD 135 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 44555655566677788899999999999999999999999887668999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccEEEEcC
Q 013515 301 FLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~Dp 321 (441)
+....... ..||+|+++.
T Consensus 136 ~~~~~~~~---~~fD~I~~~~ 153 (212)
T PRK13942 136 GTLGYEEN---APYDRIYVTA 153 (212)
T ss_pred cccCCCcC---CCcCEEEECC
Confidence 87655432 6799999864
No 45
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.35 E-value=2.6e-11 Score=112.04 Aligned_cols=147 Identities=18% Similarity=0.214 Sum_probs=107.3
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
|.-..|++.+.++...+++.++++|||+|||+|..+..++... +.++|+++|+++.+++.+++|++++|+.+++++++|
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 4557788888888889999999999999999999999998764 458999999999999999999999999889999999
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEE
Q 013515 301 FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVY 379 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvY 379 (441)
+....... ...+|.|++|.. . . ...++..+.+.++ ||.+++
T Consensus 99 ~~~~~~~~--~~~~d~v~~~~~----~----~----------------------------~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 99 APECLAQL--APAPDRVCIEGG----R----P----------------------------IKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred hHHHHhhC--CCCCCEEEEECC----c----C----------------------------HHHHHHHHHHhcCCCeEEEE
Confidence 86532111 134678877632 0 0 0356777777676 788888
Q ss_pred EcCCCCChhcHHHHHHHhchhcCCCeEEec
Q 013515 380 STCSIHQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 380 sTCS~~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
.+++ .|.-..+.+.++.....++++..
T Consensus 141 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 167 (196)
T PRK07402 141 TASS---LEGLYAISEGLAQLQARNIEVVQ 167 (196)
T ss_pred Eeec---HHHHHHHHHHHHhcCCCCceEEE
Confidence 8775 22323344444433344565544
No 46
>PTZ00146 fibrillarin; Provisional
Probab=99.34 E-value=1.7e-11 Score=118.34 Aligned_cols=84 Identities=26% Similarity=0.279 Sum_probs=66.6
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
+.+++|++|||+|||||++|.+++..+++.+.|+|+|+++++++.+.+.++.. +||.++.+|+..........+.||+
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCE
Confidence 44789999999999999999999999988899999999998887776665543 5888999998753210001257999
Q ss_pred EEEcCC
Q 013515 317 ILLDPS 322 (441)
Q Consensus 317 Il~DpP 322 (441)
|++|..
T Consensus 206 V~~Dva 211 (293)
T PTZ00146 206 IFADVA 211 (293)
T ss_pred EEEeCC
Confidence 999985
No 47
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.34 E-value=2.5e-11 Score=111.26 Aligned_cols=132 Identities=18% Similarity=0.245 Sum_probs=99.7
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~ 302 (441)
-..++....++...+++.++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++++++++.+++++.+|+.
T Consensus 13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~ 91 (187)
T PRK08287 13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP 91 (187)
T ss_pred CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch
Confidence 35566666777778888899999999999999999999874 45799999999999999999999999888999999874
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
.. . . .+||+|+++..- +. . ..++..+.+.++ +|.++++.
T Consensus 92 ~~-~--~--~~~D~v~~~~~~---~~----------------------~----------~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 92 IE-L--P--GKADAIFIGGSG---GN----------------------L----------TAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred hh-c--C--cCCCEEEECCCc---cC----------------------H----------HHHHHHHHHhcCCCeEEEEEE
Confidence 21 1 1 579999986320 10 0 245667777776 78887753
Q ss_pred CCCCChhcHHHHHHHhc
Q 013515 382 CSIHQVENEDVIKSVLP 398 (441)
Q Consensus 382 CS~~~~ENe~vV~~~l~ 398 (441)
. ..+|...+.++++
T Consensus 132 ~---~~~~~~~~~~~l~ 145 (187)
T PRK08287 132 I---LLENLHSALAHLE 145 (187)
T ss_pred e---cHhhHHHHHHHHH
Confidence 3 3466666667774
No 48
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.34 E-value=6.9e-12 Score=127.19 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=71.2
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
.++..++.+|||+|||+|..++.++.. ..+|+++|+++.+++.+++|++.+|+++++++++|+.++.... ..+||
T Consensus 228 ~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~--~~~~D 302 (374)
T TIGR02085 228 WVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ--MSAPE 302 (374)
T ss_pred HHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc--CCCCC
Confidence 344456789999999999999999864 3689999999999999999999999989999999997654322 14599
Q ss_pred EEEEcCCCCC
Q 013515 316 AILLDPSCSG 325 (441)
Q Consensus 316 ~Il~DpPCSg 325 (441)
.|++|||..|
T Consensus 303 ~vi~DPPr~G 312 (374)
T TIGR02085 303 LVLVNPPRRG 312 (374)
T ss_pred EEEECCCCCC
Confidence 9999999754
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.33 E-value=3.6e-11 Score=109.65 Aligned_cols=127 Identities=19% Similarity=0.182 Sum_probs=95.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
+|.+|||+|||+|..+..++.. .+.++|+++|+++.+++.++++++++|+++++++++|+.++.. .++||.|+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~----~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH----EEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc----cCCccEEEeh
Confidence 4889999999999999999865 4458999999999999999999999999889999999988642 2689999986
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhch
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPI 399 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~ 399 (441)
. .+- . ..++..+.++++ ||.++.. +....+..+....+.
T Consensus 117 ~----~~~----------------------~----------~~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 117 A----LAS----------------------L----------NVLLELTLNLLKVGGYFLAY----KGKKYLDEIEEAKRK 156 (181)
T ss_pred h----hhC----------------------H----------HHHHHHHHHhcCCCCEEEEE----cCCCcHHHHHHHHHh
Confidence 4 110 0 134555566666 7877754 455566666666665
Q ss_pred hcCCCeEEecCCC
Q 013515 400 AMSFGFQLATPFP 412 (441)
Q Consensus 400 ~~~~~~~~~~~~~ 412 (441)
+...+|+.++..+
T Consensus 157 ~~~~~~~~~~~~~ 169 (181)
T TIGR00138 157 CQVLGVEPLEVPP 169 (181)
T ss_pred hhhcCceEeeccc
Confidence 5567887766433
No 50
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.32 E-value=3.1e-11 Score=117.92 Aligned_cols=127 Identities=17% Similarity=0.264 Sum_probs=93.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+.++.+|||+|||+|..+..++.... ..+|+++|+++.+++.+++|++.+|+ ++|.++++|+.+..+. .+||.|
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~----~~fD~I 193 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPG----RKYDLI 193 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCC----CCccEE
Confidence 34567999999999999999998753 47999999999999999999999998 4799999998653221 479999
Q ss_pred EEcCCCCCCccccccc-CccCCCCCCCCCCCcccHHH-H---HHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 318 LLDPSCSGSGTAAERL-DHLLPSHASGHTADPTEMER-L---NKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 318 l~DpPCSg~G~~~~~p-d~~~~~~~~~~~~~~~~~~~-~---~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++|||+...+.+..-+ +.. + .+.. + ......++.++..+.++++ ||.++..+.
T Consensus 194 v~NPPy~~~~~~~~l~~~~~---~---------ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEYH---H---------EPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred EECCCCCCccchhhCCHhhh---c---------CHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9999998766542211 110 0 0111 0 1223567889999999887 688776544
No 51
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.31 E-value=1.4e-11 Score=109.05 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+.+.+|||+|||+|..+..++....+.++++++|+++.+++.+++++++++++|+++.++|+.+++...+ +.||.|+.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~--~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE--EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS--TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC--CCeeEEEE
Confidence 4688999999999999999996656678999999999999999999999999999999999999653211 68999999
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHH
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~ 396 (441)
+.++.... .+..++..+.++++ +|.++.+.+. +..|.++.+.+.
T Consensus 80 ~~~l~~~~--------------------------------~~~~~l~~~~~~lk~~G~~i~~~~~-~~~~~~~~~~~~ 124 (152)
T PF13847_consen 80 NGVLHHFP--------------------------------DPEKVLKNIIRLLKPGGILIISDPN-HNDELPEQLEEL 124 (152)
T ss_dssp ESTGGGTS--------------------------------HHHHHHHHHHHHEEEEEEEEEEEEE-HSHHHHHHHHHH
T ss_pred cCchhhcc--------------------------------CHHHHHHHHHHHcCCCcEEEEEECC-hHHHHHHHHHHH
Confidence 97761111 11356778888777 6777666665 455555554443
No 52
>PRK04266 fibrillarin; Provisional
Probab=99.31 E-value=4.1e-11 Score=112.92 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=71.0
Q ss_pred hhHHHHHH--hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 229 ASSMVAAA--LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 229 ss~l~~~~--l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
++.++..+ +.+++|++|||+|||+|..+.+++..++ .++|+|+|+++.|++.+.++++.. .||.++.+|+.....
T Consensus 58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~ 134 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPER 134 (226)
T ss_pred HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcch
Confidence 44444444 7888999999999999999999999875 689999999999999888887654 688999999875311
Q ss_pred CCCCCCCccEEEEcCC
Q 013515 307 KDPAYSEVRAILLDPS 322 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpP 322 (441)
.....++||+|+.|.+
T Consensus 135 ~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 135 YAHVVEKVDVIYQDVA 150 (226)
T ss_pred hhhccccCCEEEECCC
Confidence 1101156999998754
No 53
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.30 E-value=4.9e-11 Score=111.06 Aligned_cols=90 Identities=26% Similarity=0.371 Sum_probs=77.3
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD 308 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~ 308 (441)
...+...+++.+|++|||+|||+|..+..+++.++..++|+++|+++++++.++++++++|+. +++++++|+.+..+..
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 345556778889999999999999999999998866689999999999999999999999985 5899999998755432
Q ss_pred CCCCCccEEEEcCC
Q 013515 309 PAYSEVRAILLDPS 322 (441)
Q Consensus 309 ~~~~~fD~Il~DpP 322 (441)
.+||+|+++..
T Consensus 141 ---~~fD~Ii~~~~ 151 (205)
T PRK13944 141 ---APFDAIIVTAA 151 (205)
T ss_pred ---CCccEEEEccC
Confidence 68999999865
No 54
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.29 E-value=1.7e-10 Score=110.37 Aligned_cols=150 Identities=14% Similarity=0.202 Sum_probs=101.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
.+.+|||+|||+|..+..++...+ ...++++|+++.+++.++++++..|++++.++++|+.+... .++||.|++|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~Vi~n 161 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP----GGKFDLIVSN 161 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc----CCceeEEEEC
Confidence 356999999999999999998754 46999999999999999999999999889999999976332 1679999999
Q ss_pred CCCCCCcccccc-cCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHH
Q 013515 321 PSCSGSGTAAER-LDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKS 395 (441)
Q Consensus 321 pPCSg~G~~~~~-pd~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~ 395 (441)
||+...+....- ++.+. + . ....+ ..-......++..+.++++ ||.+++. ++. .....+.+
T Consensus 162 pPy~~~~~~~~~~~~~~~--~------e--~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~-~~~---~~~~~~~~ 227 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRF--H------E--PRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE-IGY---DQGEAVRA 227 (251)
T ss_pred CCCCchhhhhhcChhhhh--c------C--CHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE-ECc---cHHHHHHH
Confidence 999877654210 11100 0 0 00000 0112334578888988877 6887775 332 22344555
Q ss_pred HhchhcCCCeEEecCCC
Q 013515 396 VLPIAMSFGFQLATPFP 412 (441)
Q Consensus 396 ~l~~~~~~~~~~~~~~~ 412 (441)
+++ +.+|+.+....
T Consensus 228 ~l~---~~gf~~v~~~~ 241 (251)
T TIGR03534 228 LFE---AAGFADVETRK 241 (251)
T ss_pred HHH---hCCCCceEEEe
Confidence 553 34565444333
No 55
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.29 E-value=1.7e-11 Score=113.84 Aligned_cols=136 Identities=18% Similarity=0.083 Sum_probs=99.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC-CCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF-LNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~-~~~~~~~~~~~~fD~Il~ 319 (441)
++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++++..++.++.++++|+ ..++...+ .+.||.|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~-~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP-DGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC-ccccceEEE
Confidence 57899999999999999999875 3478999999999999999999999988999999999 65541111 157999998
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhc
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLP 398 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~ 398 (441)
..|.... ..+. + . -...+..+|..+.+.++ +|.++++|+ |+..+.++++
T Consensus 118 ~~~~p~~----~~~~-----~----------~-----~~~~~~~~l~~i~~~LkpgG~l~i~~~------~~~~~~~~~~ 167 (202)
T PRK00121 118 NFPDPWP----KKRH-----H----------K-----RRLVQPEFLALYARKLKPGGEIHFATD------WEGYAEYMLE 167 (202)
T ss_pred ECCCCCC----Cccc-----c----------c-----cccCCHHHHHHHHHHcCCCCEEEEEcC------CHHHHHHHHH
Confidence 7652100 0000 0 0 00124678888888877 688887764 6777877877
Q ss_pred hhcCCCeEEe
Q 013515 399 IAMSFGFQLA 408 (441)
Q Consensus 399 ~~~~~~~~~~ 408 (441)
.....+|.+.
T Consensus 168 ~~~~~g~~~~ 177 (202)
T PRK00121 168 VLSAEGGFLV 177 (202)
T ss_pred HHHhCccccc
Confidence 6666677654
No 56
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.27 E-value=2.5e-11 Score=118.71 Aligned_cols=153 Identities=21% Similarity=0.259 Sum_probs=118.9
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDP 306 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~-D~~~~~~ 306 (441)
+-|...+.+..+++|+.|||=+||||++.....- + +.+++++|++.+|++-++.|++.+|+....+... |+.+++.
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-M--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPL 260 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-c--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence 4577888888999999999999999998887654 3 3799999999999999999999999988777776 9999985
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
.. .+||.|+.|||.--+-.. ....+..+..++|+.+.+.++ ||++|+.+=-
T Consensus 261 ~~---~~vdaIatDPPYGrst~~-----------------------~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~-- 312 (347)
T COG1041 261 RD---NSVDAIATDPPYGRSTKI-----------------------KGEGLDELYEEALESASEVLKPGGRIVFAAPR-- 312 (347)
T ss_pred CC---CccceEEecCCCCccccc-----------------------ccccHHHHHHHHHHHHHHHhhcCcEEEEecCC--
Confidence 43 469999999997432211 112377888999999999887 6899997541
Q ss_pred ChhcHHHHHHHhchhcCCCeEEecCCCCCCCcccc
Q 013515 386 QVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQ 420 (441)
Q Consensus 386 ~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~ 420 (441)
.........+|++...++.|.++..+
T Consensus 313 ---------~~~~~~~~~~f~v~~~~~~~~H~sLt 338 (347)
T COG1041 313 ---------DPRHELEELGFKVLGRFTMRVHGSLT 338 (347)
T ss_pred ---------cchhhHhhcCceEEEEEEEeecCceE
Confidence 11111235689888888888776544
No 57
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.27 E-value=8.9e-11 Score=115.80 Aligned_cols=126 Identities=13% Similarity=0.205 Sum_probs=90.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
+.+|||+|||+|..+..++... +..+|+++|+++.+++.+++|++.+|+. +|+++++|+.+..+. .+||.|++|
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~----~~fDlIvsN 208 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPG----RRYDLIVSN 208 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCC----CCccEEEEC
Confidence 3689999999999999999875 3479999999999999999999999984 699999998653321 479999999
Q ss_pred CCCCCCcccccc-cCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEE
Q 013515 321 PSCSGSGTAAER-LDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYS 380 (441)
Q Consensus 321 pPCSg~G~~~~~-pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYs 380 (441)
||+.+.+.+..- ++.. +....-.. -. ..-....+.++..+.++++ ||.+++.
T Consensus 209 PPyi~~~~~~~l~~~~~---~eP~~AL~-gg----~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 209 PPYVDAEDMADLPAEYR---HEPELALA-AG----DDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCCccchhhcCHhhc---cCccceee-CC----CchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999887654221 1110 00000000 00 0122566789999999887 6777764
No 58
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.26 E-value=2e-10 Score=111.57 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=105.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
...++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++|++.....++.++++|+..... .++||.|
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~----~~~fD~I 179 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP----GGRFDLI 179 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC----CCceeEE
Confidence 45678899999999999999999886 357999999999999999999983344679999999865332 1579999
Q ss_pred EEcCCCCCCccccc-ccCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHH
Q 013515 318 LLDPSCSGSGTAAE-RLDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDV 392 (441)
Q Consensus 318 l~DpPCSg~G~~~~-~pd~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~v 392 (441)
++||||...+.+.. .++.+..+ ....+ ......+..++..+.++++ ||.++..+ .. . ....
T Consensus 180 v~npPy~~~~~~~~~~~~v~~~e----------p~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~--~-~~~~ 245 (275)
T PRK09328 180 VSNPPYIPEADIHLLQPEVRDHE----------PHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GY--D-QGEA 245 (275)
T ss_pred EECCCcCCcchhhhCCchhhhcC----------CchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-Cc--h-HHHH
Confidence 99999988765431 12221000 00011 1234577889999999887 68777643 22 2 2234
Q ss_pred HHHHhchhcCCCeEEecCCCCCC
Q 013515 393 IKSVLPIAMSFGFQLATPFPNGT 415 (441)
Q Consensus 393 V~~~l~~~~~~~~~~~~~~~~~~ 415 (441)
+..++. ..+|..+...+++.
T Consensus 246 ~~~~l~---~~gf~~v~~~~d~~ 265 (275)
T PRK09328 246 VRALLA---AAGFADVETRKDLA 265 (275)
T ss_pred HHHHHH---hCCCceeEEecCCC
Confidence 555653 34565444344444
No 59
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.26 E-value=2.2e-11 Score=122.88 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC------------
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP------------ 309 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~------------ 309 (441)
+.+|||+|||+|.+++.++... .+|+++|+++.+++.+++|++.+|++|++++++|+.++.....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 3579999999999999888763 5899999999999999999999999999999999976432100
Q ss_pred -CCCCccEEEEcCCCCCC
Q 013515 310 -AYSEVRAILLDPSCSGS 326 (441)
Q Consensus 310 -~~~~fD~Il~DpPCSg~ 326 (441)
...+||.|++|||.+|.
T Consensus 284 ~~~~~~D~v~lDPPR~G~ 301 (362)
T PRK05031 284 LKSYNFSTIFVDPPRAGL 301 (362)
T ss_pred ccCCCCCEEEECCCCCCC
Confidence 01258999999997653
No 60
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.26 E-value=3e-11 Score=121.51 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-C-------C---
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-P-------A--- 310 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-~-------~--- 310 (441)
+++|||+|||+|.+++.++... .+|+++|+++++++.+++|++.+|++|++++.+|+.++.... . .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence 3479999999999999998863 589999999999999999999999999999999987754210 0 0
Q ss_pred --CCCccEEEEcCCCCCC
Q 013515 311 --YSEVRAILLDPSCSGS 326 (441)
Q Consensus 311 --~~~fD~Il~DpPCSg~ 326 (441)
...||.|++|||.+|.
T Consensus 275 ~~~~~~d~v~lDPPR~G~ 292 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAGL 292 (353)
T ss_pred cccCCCCEEEECCCCCCC
Confidence 0237999999997654
No 61
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.26 E-value=2.7e-11 Score=112.59 Aligned_cols=101 Identities=25% Similarity=0.323 Sum_probs=81.2
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
|..+.|-.--..+.++|+++||++|||+|||+|+.|..++.+++..+.|+++|+++..++.++++++.+|..||.++++|
T Consensus 52 ~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 52 GQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp TEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred eeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 45555555555666788999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCC
Q 013515 301 FLNLDPKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpPCS 324 (441)
.....+. ...||+|++.+.|.
T Consensus 132 g~~g~~~---~apfD~I~v~~a~~ 152 (209)
T PF01135_consen 132 GSEGWPE---EAPFDRIIVTAAVP 152 (209)
T ss_dssp GGGTTGG---G-SEEEEEESSBBS
T ss_pred hhhcccc---CCCcCEEEEeeccc
Confidence 8765433 26899999987763
No 62
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.25 E-value=1.4e-10 Score=109.79 Aligned_cols=87 Identities=17% Similarity=0.362 Sum_probs=75.9
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
..+...+.+++|++|||+|||+|..+..+++..++.++|+++|+++.+++.++++++..+.+++.++++|+..++...
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-- 112 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD-- 112 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC--
Confidence 445567788899999999999999999999987667899999999999999999999888889999999998876433
Q ss_pred CCCccEEEEc
Q 013515 311 YSEVRAILLD 320 (441)
Q Consensus 311 ~~~fD~Il~D 320 (441)
++||.|+++
T Consensus 113 -~~fD~V~~~ 121 (231)
T TIGR02752 113 -NSFDYVTIG 121 (231)
T ss_pred -CCccEEEEe
Confidence 689999875
No 63
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.24 E-value=2.2e-10 Score=96.95 Aligned_cols=111 Identities=22% Similarity=0.284 Sum_probs=87.5
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 312 (441)
+...+.+.++++|||+|||+|..+..+++..++ ++|+++|+++.+++.++++++.++..+++++.+|+........ .
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 87 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL--P 87 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc--C
Confidence 445567778899999999999999999988644 7999999999999999999999998889999999875432222 5
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
+||.|+++.+ . . .+.++++.+.++++ +|.++.+.
T Consensus 88 ~~D~v~~~~~------~----------------------~-------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 88 EPDRVFIGGS------G----------------------G-------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCEEEECCc------c----------------------h-------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 7999998542 0 0 01378889999887 68877653
No 64
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.24 E-value=1.8e-10 Score=112.58 Aligned_cols=154 Identities=11% Similarity=0.151 Sum_probs=103.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
+.+|||+|||+|..++.++.... ..+|+|+|+++.+++.+++|++++|+. ++.++.+|+.+.... .+||.|++|
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~----~~fDlIvsN 189 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG----QKIDIIVSN 189 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC----CCccEEEEC
Confidence 36999999999999999998753 469999999999999999999999985 499999998753211 379999999
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHH
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~ 396 (441)
||+-........++... +. ....+ ..-....+.++..+.++++ ||.+++.++. . ....|..+
T Consensus 190 PPyi~~~~~~~~~~~~~--~e--------P~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~---~-q~~~~~~~ 255 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVR--FE--------PLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN---W-QQKSLKEL 255 (284)
T ss_pred CCCCCcchhhcCCcccc--cC--------cHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc---c-HHHHHHHH
Confidence 99976543221111110 00 00001 0123477889999999887 7888887654 2 22344444
Q ss_pred hchhcCCCeEEecCCCCCCC
Q 013515 397 LPIAMSFGFQLATPFPNGTA 416 (441)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~ 416 (441)
+.. ..+|..+...++..+
T Consensus 256 ~~~--~~~~~~~~~~~D~~g 273 (284)
T TIGR00536 256 LRI--KFTWYDVENGRDLNG 273 (284)
T ss_pred HHh--cCCCceeEEecCCCC
Confidence 421 235654444555433
No 65
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=8.8e-11 Score=107.53 Aligned_cols=98 Identities=23% Similarity=0.326 Sum_probs=87.0
Q ss_pred cCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 013515 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~ 299 (441)
.|..+.|-.--..+.++|++++|++||++|||+|+.|..||++. ++|+++|+.++-.+.+++|++.+|+.||.++++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 67777776667778889999999999999999999999999996 499999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccEEEEcCCC
Q 013515 300 DFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 300 D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
|...--+.. ..||+|++.+-+
T Consensus 128 DG~~G~~~~---aPyD~I~Vtaaa 148 (209)
T COG2518 128 DGSKGWPEE---APYDRIIVTAAA 148 (209)
T ss_pred CcccCCCCC---CCcCEEEEeecc
Confidence 998765443 789999987764
No 66
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.23 E-value=1.5e-10 Score=116.84 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=111.1
Q ss_pred ccccchhhHHHHHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 013515 223 VFLQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 301 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~ 301 (441)
++.......++..+++ ..++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|++.+|. ++.++++|+
T Consensus 232 LIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl 309 (423)
T PRK14966 232 LIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA-RVEFAHGSW 309 (423)
T ss_pred cCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcch
Confidence 3333444445544443 3467799999999999999888764 357999999999999999999999886 799999998
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCcccccc-cCccCCCCCCCCCCCcccH-HHH---HHHHHHHHHHHHHHhCCCC-Cc
Q 013515 302 LNLDPKDPAYSEVRAILLDPSCSGSGTAAER-LDHLLPSHASGHTADPTEM-ERL---NKLSAFQKKALRHALSFPG-VE 375 (441)
Q Consensus 302 ~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~-pd~~~~~~~~~~~~~~~~~-~~~---~~l~~~Q~~lL~~a~~~~~-~G 375 (441)
.+..... .++||.|++|||....+-.... ++.+ + .+ ..+ ..--...+.++..+.+.++ +|
T Consensus 310 ~e~~l~~--~~~FDLIVSNPPYI~~~e~~l~~~~v~---~---------EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG 375 (423)
T PRK14966 310 FDTDMPS--EGKWDIIVSNPPYIENGDKHLLQGDLR---F---------EPQIALTDFSDGLSCIRTLAQGAPDRLAEGG 375 (423)
T ss_pred hcccccc--CCCccEEEECCCCCCcchhhhcchhhh---c---------CHHHHhhCCCchHHHHHHHHHHHHHhcCCCc
Confidence 6543211 1579999999998765532110 1110 0 01 001 1222356788888888877 67
Q ss_pred EEEEEcCCCCChhcHHHHHHHhchhcCCCeEEecCCCCCCCc
Q 013515 376 RVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAE 417 (441)
Q Consensus 376 ~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~ 417 (441)
.+++.. .....+.|.++++ ..+|..++..+++.+.
T Consensus 376 ~lilEi----G~~Q~e~V~~ll~---~~Gf~~v~v~kDl~G~ 410 (423)
T PRK14966 376 FLLLEH----GFDQGAAVRGVLA---ENGFSGVETLPDLAGL 410 (423)
T ss_pred EEEEEE----CccHHHHHHHHHH---HCCCcEEEEEEcCCCC
Confidence 766432 2233445555653 2456655555666554
No 67
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.22 E-value=9.9e-11 Score=108.10 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..++.++.. ...+|+++|+++..++.+++|++.+|+.++.++++|+....... ...||.|++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~--~~~fDlV~~ 127 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP--GTPHNVVFV 127 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc--CCCceEEEE
Confidence 56889999999999999865443 24799999999999999999999999989999999987644221 146999999
Q ss_pred cCCC
Q 013515 320 DPSC 323 (441)
Q Consensus 320 DpPC 323 (441)
|||.
T Consensus 128 DPPy 131 (199)
T PRK10909 128 DPPF 131 (199)
T ss_pred CCCC
Confidence 9994
No 68
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.22 E-value=2e-10 Score=105.14 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
+|.+|||+|||+|..+..++... +.++|+++|+++.+++.++++++.+|+++++++++|+.++.. . ++||.|+++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~---~~fDlV~~~ 119 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-E---EKFDVVTSR 119 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-C---CCccEEEEc
Confidence 48999999999999999998864 458999999999999999999999999889999999988765 2 689999975
Q ss_pred CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 321 PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 321 pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
. .+ + . ..++..+.+.++ ||.++..-...
T Consensus 120 ~----~~----~------------------~----------~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 120 A----VA----S------------------L----------SDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred c----cc----C------------------H----------HHHHHHHHHhcCCCeEEEEEeCCC
Confidence 2 11 0 0 246777778777 78888775553
No 69
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.21 E-value=7.2e-11 Score=119.55 Aligned_cols=114 Identities=27% Similarity=0.333 Sum_probs=89.6
Q ss_pred hHHHHHHhCCC-CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 013515 230 SSMVAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 230 s~l~~~~l~~~-~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 308 (441)
+.+++..+... ++.+|||++||+|..++.++...+ ...|+++|+++..++.+++|++.+|++++++.++|+..+....
T Consensus 45 ~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~ 123 (382)
T PRK04338 45 SVLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEE 123 (382)
T ss_pred HHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhc
Confidence 33444444433 457999999999999999988753 3589999999999999999999999988889999997654321
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 383 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS 383 (441)
..||+|++||| |++ ...|+.|+..++.|.++|.|||
T Consensus 124 ---~~fD~V~lDP~--Gs~----------------------------------~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 124 ---RKFDVVDIDPF--GSP----------------------------------APFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred ---CCCCEEEECCC--CCc----------------------------------HHHHHHHHHHhcCCCEEEEEec
Confidence 56999999998 443 1456777776677888888876
No 70
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.21 E-value=2.7e-10 Score=106.49 Aligned_cols=97 Identities=27% Similarity=0.319 Sum_probs=79.6
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
|..+.+......+..++.++++++|||+|||+|..+..++.+. ++|+++|+++.+++.++++++++|+.++.+..+|
T Consensus 58 ~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d 134 (212)
T PRK00312 58 GQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134 (212)
T ss_pred CCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC
Confidence 3344444445566677888999999999999999999888774 4899999999999999999999999889999999
Q ss_pred CCCCCCCCCCCCCccEEEEcCCC
Q 013515 301 FLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
+...... .++||.|+++.+|
T Consensus 135 ~~~~~~~---~~~fD~I~~~~~~ 154 (212)
T PRK00312 135 GWKGWPA---YAPFDRILVTAAA 154 (212)
T ss_pred cccCCCc---CCCcCEEEEccCc
Confidence 8654332 2679999999865
No 71
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.20 E-value=3.8e-10 Score=111.63 Aligned_cols=88 Identities=17% Similarity=0.250 Sum_probs=75.2
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
.....+++++|++|||+|||+|..+..+++..+..+.|+++|+++++++.++++++.+|++++.++++|+.......
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~--- 147 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF--- 147 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc---
Confidence 34445678899999999999999999999987655789999999999999999999999999999999987665433
Q ss_pred CCccEEEEcCC
Q 013515 312 SEVRAILLDPS 322 (441)
Q Consensus 312 ~~fD~Il~DpP 322 (441)
..||+|+++..
T Consensus 148 ~~fD~Ii~~~g 158 (322)
T PRK13943 148 APYDVIFVTVG 158 (322)
T ss_pred CCccEEEECCc
Confidence 57999998743
No 72
>PRK14968 putative methyltransferase; Provisional
Probab=99.19 E-value=3.7e-10 Score=102.96 Aligned_cols=155 Identities=18% Similarity=0.224 Sum_probs=103.1
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDPK 307 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~--v~~~~~D~~~~~~~ 307 (441)
+.++...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...+..+ +.++++|..+....
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 88 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG 88 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc
Confidence 455555666678999999999999999999887 3799999999999999999999988865 88889998663321
Q ss_pred CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCC
Q 013515 308 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQ 386 (441)
Q Consensus 308 ~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~ 386 (441)
..||.|+++||+...+- +..+... +. .....-.........++..+.++++ +|.+++..++...
T Consensus 89 ----~~~d~vi~n~p~~~~~~-----~~~~~~~-----~~-~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~ 153 (188)
T PRK14968 89 ----DKFDVILFNPPYLPTEE-----EEEWDDW-----LN-YALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG 153 (188)
T ss_pred ----cCceEEEECCCcCCCCc-----hhhhhhh-----hh-hhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC
Confidence 47999999999854331 1111000 00 0000000112345678888888887 6877777666543
Q ss_pred hhcHHHHHHHhchhcCCCeEEe
Q 013515 387 VENEDVIKSVLPIAMSFGFQLA 408 (441)
Q Consensus 387 ~ENe~vV~~~l~~~~~~~~~~~ 408 (441)
. +. +..+++ ..+|++.
T Consensus 154 ~--~~-l~~~~~---~~g~~~~ 169 (188)
T PRK14968 154 E--DE-VLEYLE---KLGFEAE 169 (188)
T ss_pred H--HH-HHHHHH---HCCCeee
Confidence 2 33 334443 3466553
No 73
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.18 E-value=9.2e-11 Score=108.23 Aligned_cols=117 Identities=16% Similarity=0.123 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
..+.+|||+|||+|..+..++... +...|+++|+++.+++.+++++++.|++|+.++++|+.++.......+.+|.|++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 346699999999999999999875 4579999999999999999999999999999999999875422111247999999
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
+.|.- |++.. ..+.+ -.+..++..+.+.|+ ||.+..+|
T Consensus 94 ~~pdp------------w~k~~-------h~~~r-----~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 94 NFPDP------------WPKKR-------HNKRR-----ITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ECCCc------------CCCCC-------ccccc-----cCCHHHHHHHHHHhCCCCEEEEEe
Confidence 98721 11000 00000 114577888888777 67776655
No 74
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.18 E-value=4.2e-10 Score=108.67 Aligned_cols=117 Identities=25% Similarity=0.312 Sum_probs=88.5
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH---hCCCcEEEEeccCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL---SGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~---~g~~~v~~~~~D~~~~~~~~ 308 (441)
++...+.+.++++|||+|||+|..+..+++..++.++|+|+|++++|++.++++... .+.+++.++++|+.+++..+
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~ 143 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD 143 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC
Confidence 445567788899999999999999999988876668999999999999999877642 23468999999999887654
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
++||.|++. .+ +..-+| ...+|..+.+.++ ||.++.++.+
T Consensus 144 ---~sfD~V~~~-----~~-l~~~~d--------------------------~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 144 ---CYFDAITMG-----YG-LRNVVD--------------------------RLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred ---CCEeEEEEe-----cc-cccCCC--------------------------HHHHHHHHHHHcCcCcEEEEEECC
Confidence 689999842 11 211111 1367888888777 7888776554
No 75
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.18 E-value=3.7e-10 Score=102.82 Aligned_cols=132 Identities=23% Similarity=0.314 Sum_probs=92.8
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCc--------EEEEEeCCHHHHHHHHHHHHHhCCC-cE
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG--------KIVACELNKERVRRLKDTIKLSGAA-NI 294 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~--------~V~a~D~~~~rl~~l~~~~~~~g~~-~v 294 (441)
.++..-+..++.+.++++|+.|||-+||+|+..+..+.+..+.. .++++|+++++++.+++|++..|+. .|
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 34444566677788889999999999999999988877654433 3899999999999999999999984 58
Q ss_pred EEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC
Q 013515 295 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV 374 (441)
Q Consensus 295 ~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~ 374 (441)
.+...|+.+++... +.+|.|+.|||. |. | ...-..+..+..++++.+.+.+++
T Consensus 91 ~~~~~D~~~l~~~~---~~~d~IvtnPPy---G~--r-------------------~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 91 DFIQWDARELPLPD---GSVDAIVTNPPY---GR--R-------------------LGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEEE--GGGGGGTT---SBSCEEEEE--S---TT--S-------------------HCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred EEEecchhhccccc---CCCCEEEECcch---hh--h-------------------ccCHHHHHHHHHHHHHHHHHHCCC
Confidence 89999999998332 689999999995 21 0 112234577888999999887776
Q ss_pred cEEEEEcCC
Q 013515 375 ERVVYSTCS 383 (441)
Q Consensus 375 G~lvYsTCS 383 (441)
..|+.|++
T Consensus 144 -~~v~l~~~ 151 (179)
T PF01170_consen 144 -RAVFLTTS 151 (179)
T ss_dssp -CEEEEEES
T ss_pred -CEEEEEEC
Confidence 55555554
No 76
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.17 E-value=3.7e-10 Score=104.99 Aligned_cols=129 Identities=23% Similarity=0.278 Sum_probs=104.8
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCC-----cEEEEEeCCHHHHHHHHHHHHHhCC-C--cEEEEeccCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK-----GKIVACELNKERVRRLKDTIKLSGA-A--NIEVLHGDFLN 303 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~-----~~V~a~D~~~~rl~~l~~~~~~~g~-~--~v~~~~~D~~~ 303 (441)
+.+.-|+|..|.+|||+|+|+|..|+-+...+... ++|+.+|+++.||..++++.++.++ + .+.++++|+.+
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 34456788899999999999999999999988653 8999999999999999999988776 2 38999999999
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++..+ .+||...+ +.| +|+-+|+ .+.|+.|++.|| ||++ + |
T Consensus 171 LpFdd---~s~D~yTi-----afG-IRN~th~--------------------------~k~l~EAYRVLKpGGrf-~--c 212 (296)
T KOG1540|consen 171 LPFDD---DSFDAYTI-----AFG-IRNVTHI--------------------------QKALREAYRVLKPGGRF-S--C 212 (296)
T ss_pred CCCCC---CcceeEEE-----ecc-eecCCCH--------------------------HHHHHHHHHhcCCCcEE-E--E
Confidence 99776 67898854 444 4544443 367899999988 4544 3 8
Q ss_pred CCCChhcHHHHHHHhc
Q 013515 383 SIHQVENEDVIKSVLP 398 (441)
Q Consensus 383 S~~~~ENe~vV~~~l~ 398 (441)
--++.+|.+.+.+|.+
T Consensus 213 LeFskv~~~~l~~fy~ 228 (296)
T KOG1540|consen 213 LEFSKVENEPLKWFYD 228 (296)
T ss_pred EEccccccHHHHHHHH
Confidence 8899999888888874
No 77
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.17 E-value=5.6e-10 Score=112.48 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=93.6
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeccCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---ANIEVLHGDFLN 303 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~---~~v~~~~~D~~~ 303 (441)
|.++.+....+....+++|||+|||+|..++.++... +..+|+++|+++.+++.+++|++.++. .+++++..|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 6788888888876667799999999999999999874 458999999999999999999998874 368888888754
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
... ..+||.|+++||.--...+ +.. .-.+++..+.+.++ ||.+....
T Consensus 293 ~~~----~~~fDlIlsNPPfh~~~~~--------------------~~~-------ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 293 GVE----PFRFNAVLCNPPFHQQHAL--------------------TDN-------VAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cCC----CCCEEEEEECcCcccCccC--------------------CHH-------HHHHHHHHHHHhcccCCEEEEEE
Confidence 321 1579999999996321100 111 12467888888877 67665553
No 78
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.8e-10 Score=106.58 Aligned_cols=142 Identities=20% Similarity=0.262 Sum_probs=111.4
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK 307 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~ 307 (441)
...++.+.|++.||.+|++.|.|+|+.+..+++.+++.|+++.+|.+..|.+.+.+.++..|+ +|+++.+.|+......
T Consensus 93 Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 93 DIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred cHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 455888899999999999999999999999999999999999999999999999999999998 7899999999876654
Q ss_pred CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC--CcEE-EEEcCCC
Q 013515 308 DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG--VERV-VYSTCSI 384 (441)
Q Consensus 308 ~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~--~G~l-vYsTCS~ 384 (441)
.. ...+|.|++|.| .| | ..+-+|++.++ ||++ -+|-|-
T Consensus 173 ~k-s~~aDaVFLDlP---------aP---------------w-------------~AiPha~~~lk~~g~r~csFSPCI- 213 (314)
T KOG2915|consen 173 IK-SLKADAVFLDLP---------AP---------------W-------------EAIPHAAKILKDEGGRLCSFSPCI- 213 (314)
T ss_pred cc-ccccceEEEcCC---------Ch---------------h-------------hhhhhhHHHhhhcCceEEeccHHH-
Confidence 32 267999999999 22 1 34566767665 4444 345553
Q ss_pred CChhcHHHHHHHhchhcCCCeEEecCCCCCC
Q 013515 385 HQVENEDVIKSVLPIAMSFGFQLATPFPNGT 415 (441)
Q Consensus 385 ~~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~ 415 (441)
++|++-++.....+|.-+..+..|.
T Consensus 214 ------EQvqrtce~l~~~gf~~i~~vEv~~ 238 (314)
T KOG2915|consen 214 ------EQVQRTCEALRSLGFIEIETVEVLL 238 (314)
T ss_pred ------HHHHHHHHHHHhCCCceEEEEEeeh
Confidence 6677777655566775555555554
No 79
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.16 E-value=6.8e-10 Score=107.82 Aligned_cols=111 Identities=22% Similarity=0.268 Sum_probs=88.0
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
+..+.+|++|||+|||+|..+..++..++..++|+++|+++.+++.++++.+..|+.+++++.+|+..++..+ +.||
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~---~~fD 148 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD---NSVD 148 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC---Ccee
Confidence 3457789999999999999888888887777899999999999999999999999989999999998876543 5799
Q ss_pred EEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 316 AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 316 ~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
.|+.+.- +...|| . ..+++.+++.++ ||+++.+.
T Consensus 149 ~Vi~~~v------~~~~~d----------------~----------~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 149 VIISNCV------INLSPD----------------K----------ERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEEcCc------ccCCCC----------------H----------HHHHHHHHHHcCCCcEEEEEE
Confidence 9997632 111111 1 357888888887 78877753
No 80
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.15 E-value=7.6e-10 Score=101.54 Aligned_cols=113 Identities=24% Similarity=0.297 Sum_probs=78.8
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-----CCC
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-----DPA 310 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-----~~~ 310 (441)
+..+.+|++|||+|||+|+.+..++....+.++|+++|+++.+ +..++.++++|+.+.... ...
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhC
Confidence 4456789999999999999999999887666799999999864 234678888898764310 001
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEE
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYS 380 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYs 380 (441)
.++||+|++|+++...|... ...... ...+..+|..+.++++ ||.++..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~--------------------~~~~~~-~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWD--------------------IDHLRS-IDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCccEEEcCCCCCCCCCcc--------------------ccHHHH-HHHHHHHHHHHHHHccCCCEEEEE
Confidence 25799999997654444321 111111 2346788999999877 6777764
No 81
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.14 E-value=5.4e-10 Score=111.74 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=98.4
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
|.++.+....+.....++|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++.+++. .+++..|+....
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~~- 258 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSDI- 258 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEccccccc-
Confidence 6678888887776666799999999999999999874 4478999999999999999999999875 467778875422
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
.++||.|+++||-- .|.- .+. ..-..++..+.+.|+ ||.++..+++..
T Consensus 259 ----~~~fDlIvsNPPFH-~g~~-------------------~~~-------~~~~~~i~~a~~~LkpgG~L~iVan~~l 307 (342)
T PRK09489 259 ----KGRFDMIISNPPFH-DGIQ-------------------TSL-------DAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred ----CCCccEEEECCCcc-CCcc-------------------ccH-------HHHHHHHHHHHHhcCcCCEEEEEEeCCC
Confidence 16799999999941 1110 001 112467888888777 799988888888
Q ss_pred Chhc
Q 013515 386 QVEN 389 (441)
Q Consensus 386 ~~EN 389 (441)
|.|.
T Consensus 308 ~y~~ 311 (342)
T PRK09489 308 PYPD 311 (342)
T ss_pred ChHH
Confidence 7663
No 82
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=7.7e-10 Score=106.47 Aligned_cols=91 Identities=23% Similarity=0.309 Sum_probs=79.1
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
|.+|.+...-|....+.+|||+|||.|..++.+++.. +..+|+.+|++..+++.+++|++.+++++..+...|...-.
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v- 221 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV- 221 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-
Confidence 7899999999998888899999999999999999985 46899999999999999999999999988656666654322
Q ss_pred CCCCCCCccEEEEcCCC
Q 013515 307 KDPAYSEVRAILLDPSC 323 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPC 323 (441)
.++||.|+++||-
T Consensus 222 ----~~kfd~IisNPPf 234 (300)
T COG2813 222 ----EGKFDLIISNPPF 234 (300)
T ss_pred ----cccccEEEeCCCc
Confidence 1579999999994
No 83
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.13 E-value=2e-10 Score=115.70 Aligned_cols=103 Identities=22% Similarity=0.324 Sum_probs=84.6
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
-+|||++||+|..++.++....+..+|+++|+++..++.+++|++.+++.+++++++|+..+..... ..||+|.+||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~--~~fDvIdlDPf 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRN--RKFHVIDIDPF 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhC--CCCCEEEeCCC
Confidence 4899999999999999988754557999999999999999999999999889999999987754321 56999999997
Q ss_pred CCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 013515 323 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 383 (441)
Q Consensus 323 CSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS 383 (441)
|+. ...|+.|++.++.|.++|.|||
T Consensus 124 --Gs~----------------------------------~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 --GTP----------------------------------APFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred --CCc----------------------------------HHHHHHHHHhcccCCEEEEEec
Confidence 321 1457788877776667777876
No 84
>cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the
Probab=99.12 E-value=4.6e-10 Score=96.54 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcc-ChhhH-HHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccc-----cchHH
Q 013515 34 ARREAAKVLRLVLRG-DARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW-----KRQEE 106 (441)
Q Consensus 34 ~R~~A~~vL~~v~~~-~~~~~-~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~-----~~~~~ 106 (441)
+|+.|+++|+++..+ +...+ .+..... ......|++++++|||||+|++..||++|++ ++++++ +..+.
T Consensus 2 ~R~~a~~~L~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~lv~gv~r~~~~ld~~i~~--~~~~~~~~r~~~~~~~ 77 (129)
T cd00447 2 AREIAFQALYQVEIRNGISLEAVLSALEK--LQLAKKDRPFALELVYGVLRNLPELDDIISP--LLKKWLLDRLDKVDRA 77 (129)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHH--cccchhHHHHHHHHHHHHHHhHHHHHHHHHH--HccCCChhhhhHHHHH
Confidence 699999999999875 44433 3332221 1233478999999999999999999999998 555432 23466
Q ss_pred HHHHHHHHHHhcC-CCCchHHHHHHHHHhhHHH---HHHHHHHHHHc
Q 013515 107 LVYILTYDILFGQ-EISLVGDAEKFLMLHKGAI---QLALAQLLVRN 149 (441)
Q Consensus 107 lL~l~~yql~f~~-~ip~~~~i~~~v~~~k~~~---~~~l~~~~~~~ 149 (441)
+++++.|++++.. ++|+++.++++|+..|... ...|.|.++++
T Consensus 78 il~l~~~el~~~~~~~p~~~vineaVelak~~~~~~~~~fVNaVLr~ 124 (129)
T cd00447 78 ILRLLLYELYQLLYDVPPPVAINEAVELAKRFGDDDSAKFVNGVLRR 124 (129)
T ss_pred HHHHHHHHHHhCcCCCCchhHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 7777777777665 5899999999999987532 23466655553
No 85
>PLN02476 O-methyltransferase
Probab=99.12 E-value=4.9e-10 Score=108.09 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=84.5
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDF 301 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~ 301 (441)
..+.....++...++...++.+|||+|+++|+.|++++..+++.|+|+++|.++++++.+++++++.|+. +|+++.+|+
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA 179 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA 179 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 4455666777777888888899999999999999999998877889999999999999999999999995 799999999
Q ss_pred CCCCCCC---CCCCCccEEEEcCC
Q 013515 302 LNLDPKD---PAYSEVRAILLDPS 322 (441)
Q Consensus 302 ~~~~~~~---~~~~~fD~Il~DpP 322 (441)
.+..+.. ...++||.|++|++
T Consensus 180 ~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 180 AESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred HHHHHHHHhcccCCCCCEEEECCC
Confidence 7754321 11257999999998
No 86
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.09 E-value=1.3e-10 Score=103.21 Aligned_cols=84 Identities=25% Similarity=0.455 Sum_probs=61.1
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEcC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~Dp 321 (441)
+.|+|+|||.||-|+++|... .+|+|+|+++.+++.+++|++-+|+ ++|.++++|+.++.........||.|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 379999999999999999873 5899999999999999999999997 689999999988764321101289999999
Q ss_pred CCCCCccc
Q 013515 322 SCSGSGTA 329 (441)
Q Consensus 322 PCSg~G~~ 329 (441)
|=.|-.-.
T Consensus 78 PWGGp~Y~ 85 (163)
T PF09445_consen 78 PWGGPSYS 85 (163)
T ss_dssp -BSSGGGG
T ss_pred CCCCcccc
Confidence 97665443
No 87
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.08 E-value=9.9e-10 Score=104.31 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=78.8
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP 306 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~ 306 (441)
...++...++...++.+|||+|||+|..++.++..+++.++|+++|+++++++.+++|+++.|+ ++|+++.+|+.+..+
T Consensus 55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~ 134 (234)
T PLN02781 55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALD 134 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHH
Confidence 3455666667777788999999999999999999887789999999999999999999999998 469999999987532
Q ss_pred CC---CCCCCccEEEEcCC
Q 013515 307 KD---PAYSEVRAILLDPS 322 (441)
Q Consensus 307 ~~---~~~~~fD~Il~DpP 322 (441)
.. ...++||.|++|++
T Consensus 135 ~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 135 QLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HHHhCCCCCCCCEEEECCC
Confidence 11 01257999999987
No 88
>PLN02244 tocopherol O-methyltransferase
Probab=99.06 E-value=2.1e-09 Score=107.77 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=66.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.++++|||+|||+|+.+..+++.. ..+|+++|+++.+++.++++++..|+ +++++.++|+.+++..+ ++||.|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~---~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFED---GQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCC---CCccEEE
Confidence 678999999999999999999875 36999999999999999999998887 57999999998877554 6899998
Q ss_pred E
Q 013515 319 L 319 (441)
Q Consensus 319 ~ 319 (441)
+
T Consensus 192 s 192 (340)
T PLN02244 192 S 192 (340)
T ss_pred E
Confidence 5
No 89
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.04 E-value=2.8e-09 Score=99.52 Aligned_cols=139 Identities=21% Similarity=0.216 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC------CCCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP------KDPAYS 312 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~------~~~~~~ 312 (441)
.++|.+|||+|||||..+..+++..++.+.|+|+|+++ + .+..+++++++|+.+... ... .+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~-~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVG-DS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhC-CC
Confidence 36789999999999999999999987778999999998 1 234578999999987530 011 26
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHH
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENED 391 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~ 391 (441)
+||.|+.|+...-+|. | . .+......+...+|..+.++++ ||.++..+ +..+...
T Consensus 117 ~~D~V~S~~~~~~~g~----~----------------~-~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~---~~~~~~~ 172 (209)
T PRK11188 117 KVQVVMSDMAPNMSGT----P----------------A-VDIPRAMYLVELALDMCRDVLAPGGSFVVKV---FQGEGFD 172 (209)
T ss_pred CCCEEecCCCCccCCC----h----------------H-HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE---ecCcCHH
Confidence 7999999862111221 0 0 1111112224578999999887 67776542 3334433
Q ss_pred HHHHHhchhcCCCeEEecCCCCCCCc
Q 013515 392 VIKSVLPIAMSFGFQLATPFPNGTAE 417 (441)
Q Consensus 392 vV~~~l~~~~~~~~~~~~~~~~~~~~ 417 (441)
.+...+ ...|+.++..++-..+
T Consensus 173 ~~l~~l----~~~f~~v~~~Kp~ssr 194 (209)
T PRK11188 173 EYLREI----RSLFTKVKVRKPDSSR 194 (209)
T ss_pred HHHHHH----HhCceEEEEECCcccc
Confidence 333333 2345555544444333
No 90
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.04 E-value=1.7e-09 Score=108.74 Aligned_cols=122 Identities=13% Similarity=0.095 Sum_probs=94.8
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
..+....+..+||+|||+|..++++|... +...++|+|+++.+++.+.+++...|++||.++++|+..+....+ .+++
T Consensus 116 ~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~-~~s~ 193 (390)
T PRK14121 116 DFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP-SNSV 193 (390)
T ss_pred HHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC-CCce
Confidence 34455667899999999999999999986 558999999999999999999999999999999999976532221 2689
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
|.|++.-|+- |++ .+. .++ .|..+|..+.+.|+ ||.+...|.+.
T Consensus 194 D~I~lnFPdP------------W~K----------krH--RRl--v~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 194 EKIFVHFPVP------------WDK----------KPH--RRV--ISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred eEEEEeCCCC------------ccc----------cch--hhc--cHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 9999877642 211 011 111 36788999999887 78999888863
No 91
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.04 E-value=2.7e-09 Score=112.22 Aligned_cols=154 Identities=10% Similarity=0.193 Sum_probs=100.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
++.+|||+|||+|..++.++...+ ..+|+++|+|+.+++.+++|++.+|+ +++.++.+|+..... .++||.|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~----~~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE----KQKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc----CCCccEEEE
Confidence 457899999999999999988754 47999999999999999999999987 468999999764322 157999999
Q ss_pred cCCCCCCccccc-ccCccCCCCCCCCCCCcccHHHH---HHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHH
Q 013515 320 DPSCSGSGTAAE-RLDHLLPSHASGHTADPTEMERL---NKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIK 394 (441)
Q Consensus 320 DpPCSg~G~~~~-~pd~~~~~~~~~~~~~~~~~~~~---~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~ 394 (441)
|||.....-... .++.. .+. -...+ ..-....+.++..+.++|+ +|.++.. +.. . ..+.|.
T Consensus 213 NPPYi~~~~~~~l~~~v~--~~E--------P~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~--~-q~~~v~ 278 (506)
T PRK01544 213 NPPYISHSEKSEMAIETI--NYE--------PSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF--K-QEEAVT 278 (506)
T ss_pred CCCCCCchhhhhcCchhh--ccC--------cHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC--c-hHHHHH
Confidence 999876543210 00110 000 00000 0123456788999988887 6777654 332 2 333445
Q ss_pred HHhchhcCCCeEEecCCCCCCC
Q 013515 395 SVLPIAMSFGFQLATPFPNGTA 416 (441)
Q Consensus 395 ~~l~~~~~~~~~~~~~~~~~~~ 416 (441)
.++. ..+|..+...++..+
T Consensus 279 ~~~~---~~g~~~~~~~~D~~g 297 (506)
T PRK01544 279 QIFL---DHGYNIESVYKDLQG 297 (506)
T ss_pred HHHH---hcCCCceEEEecCCC
Confidence 5543 234544444444443
No 92
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.04 E-value=5.1e-10 Score=103.15 Aligned_cols=81 Identities=28% Similarity=0.429 Sum_probs=60.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
.++|+.|+|++||.|.+++.+|.. .....|+|+|++|..++.+++|++.++++ +|.++++|+.++... ..||+|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~----~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE----GKFDRV 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T----T-EEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc----cccCEE
Confidence 578999999999999999999985 34578999999999999999999999995 488999999988762 689999
Q ss_pred EEcCCCC
Q 013515 318 LLDPSCS 324 (441)
Q Consensus 318 l~DpPCS 324 (441)
+++.|-+
T Consensus 174 im~lp~~ 180 (200)
T PF02475_consen 174 IMNLPES 180 (200)
T ss_dssp EE--TSS
T ss_pred EECChHH
Confidence 9999954
No 93
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.02 E-value=2.6e-09 Score=99.24 Aligned_cols=95 Identities=17% Similarity=0.306 Sum_probs=82.2
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEe-ccCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLH-GDFLNL 304 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~-~D~~~~ 304 (441)
.+...+...++...+..+||++|.+.|..|++||..++..++++++|+++++.+.+++|+++.|+.+ |+++. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 6667788888888889999999999999999999999867899999999999999999999999965 77888 588766
Q ss_pred CCCCCCCCCccEEEEcCC
Q 013515 305 DPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpP 322 (441)
... ...++||.||+|+-
T Consensus 125 l~~-~~~~~fDliFIDad 141 (219)
T COG4122 125 LSR-LLDGSFDLVFIDAD 141 (219)
T ss_pred HHh-ccCCCccEEEEeCC
Confidence 543 12378999999987
No 94
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=8e-10 Score=112.10 Aligned_cols=118 Identities=19% Similarity=0.349 Sum_probs=90.9
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC--C
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP--A 310 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~--~ 310 (441)
+-..++...+..++|+|||+|.+++.+|+. ..+|+++|++++.++.|+.|++.+|+.|.+++++.++++-+... .
T Consensus 375 i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~ 451 (534)
T KOG2187|consen 375 IGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPC 451 (534)
T ss_pred HHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccC
Confidence 334567778899999999999999998875 47899999999999999999999999999999997777664431 1
Q ss_pred CCCcc-EEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCCh
Q 013515 311 YSEVR-AILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQV 387 (441)
Q Consensus 311 ~~~fD-~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ 387 (441)
..+-+ ++++|||..|.-. ..+..-.++.+.-++||.||..+-.
T Consensus 452 ~~~~~~v~iiDPpR~Glh~----------------------------------~~ik~l~~~~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 452 CDSETLVAIIDPPRKGLHM----------------------------------KVIKALRAYKNPRRLVYVSCNPHTA 495 (534)
T ss_pred CCCCceEEEECCCcccccH----------------------------------HHHHHHHhccCccceEEEEcCHHHh
Confidence 12335 8999999876532 2233333344478999999987654
No 95
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=99.00 E-value=7.6e-10 Score=107.77 Aligned_cols=94 Identities=27% Similarity=0.369 Sum_probs=79.6
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-CC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-AY 311 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-~~ 311 (441)
+...|.+++|+.++|++||.||+|..+++.+++.++|+|+|.|+.+++.+++++.. .++++++++|+.++..... ..
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCC
Confidence 45567788999999999999999999999987679999999999999999998876 4689999999998763321 12
Q ss_pred CCccEEEEcCCCCCCcc
Q 013515 312 SEVRAILLDPSCSGSGT 328 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~ 328 (441)
.+||+|++|.-+|..-.
T Consensus 89 ~~vDgIl~DLGvSs~Ql 105 (296)
T PRK00050 89 GKVDGILLDLGVSSPQL 105 (296)
T ss_pred CccCEEEECCCcccccc
Confidence 37999999999998754
No 96
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.00 E-value=3.8e-09 Score=97.68 Aligned_cols=84 Identities=24% Similarity=0.151 Sum_probs=70.9
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 308 (441)
.+..+...+...++.+|||+|||+|..+.++++. ..+|+|+|+++.+++.++++++..++.++++.+.|+.+++..
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 93 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD- 93 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-
Confidence 3445566677778899999999999999999875 358999999999999999999999988899999998776542
Q ss_pred CCCCCccEEEE
Q 013515 309 PAYSEVRAILL 319 (441)
Q Consensus 309 ~~~~~fD~Il~ 319 (441)
+.||.|++
T Consensus 94 ---~~fD~I~~ 101 (197)
T PRK11207 94 ---GEYDFILS 101 (197)
T ss_pred ---CCcCEEEE
Confidence 56999985
No 97
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=9.1e-09 Score=100.18 Aligned_cols=157 Identities=15% Similarity=0.170 Sum_probs=97.6
Q ss_pred CcccccchhhHHHHHHh-CCCCCC-EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 013515 221 GCVFLQGKASSMVAAAL-APKPGW-KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 298 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l-~~~~g~-~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~ 298 (441)
+.++.......++-.++ .....+ +|||+|||+|-.++.++.... ...|+|+|+|+.+++.+++|++++|+.++.++.
T Consensus 88 ~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~ 166 (280)
T COG2890 88 GVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVVQ 166 (280)
T ss_pred CceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEe
Confidence 33444444444544432 222222 799999999999999998754 479999999999999999999999987777777
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHH-HH---HHHHHHHHHHHHHhCCCCC
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMER-LN---KLSAFQKKALRHALSFPGV 374 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~-~~---~l~~~Q~~lL~~a~~~~~~ 374 (441)
+|...... ++||.|+.+||+=..-.....|+.. .+ .+.. +- .-...-+.++..+..+++.
T Consensus 167 ~dlf~~~~-----~~fDlIVsNPPYip~~~~~~~~~~~--~~---------EP~~Al~~g~dGl~~~~~i~~~a~~~l~~ 230 (280)
T COG2890 167 SDLFEPLR-----GKFDLIVSNPPYIPAEDPELLPEVV--RY---------EPLLALVGGGDGLEVYRRILGEAPDILKP 230 (280)
T ss_pred eecccccC-----CceeEEEeCCCCCCCcccccChhhh--cc---------CHHHHHccCccHHHHHHHHHHhhHHHcCC
Confidence 76544221 4799999999984332000001000 00 0110 00 2345778899999888875
Q ss_pred cEEEEEcCCCCChhcHHHHHHHh
Q 013515 375 ERVVYSTCSIHQVENEDVIKSVL 397 (441)
Q Consensus 375 G~lvYsTCS~~~~ENe~vV~~~l 397 (441)
|.++..-++... .+.|.+.+
T Consensus 231 ~g~l~le~g~~q---~~~v~~~~ 250 (280)
T COG2890 231 GGVLILEIGLTQ---GEAVKALF 250 (280)
T ss_pred CcEEEEEECCCc---HHHHHHHH
Confidence 433333344433 33444444
No 98
>PHA03411 putative methyltransferase; Provisional
Probab=98.99 E-value=1.6e-08 Score=96.94 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=103.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
.+.++.+|||+|||+|..+..++.... ..+|+++|+++.+++.+++++ .++.++++|+.++... .+||.|
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~----~kFDlI 130 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESN----EKFDVV 130 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhccc----CCCcEE
Confidence 455677999999999999998877643 369999999999999998863 3678999999876532 579999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHH-----------HHHHHHHHhCCCC-Cc--EEEEEcCC
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAF-----------QKKALRHALSFPG-VE--RVVYSTCS 383 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~-----------Q~~lL~~a~~~~~-~G--~lvYsTCS 383 (441)
++|||........+ ...... -.+.+.....+++ +| .++||+--
T Consensus 131 IsNPPF~~l~~~d~-----------------------~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 131 ISNPPFGKINTTDT-----------------------KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred EEcCCccccCchhh-----------------------hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc
Confidence 99999764332111 111111 1345555556665 45 56788744
Q ss_pred C-CChhcHHHHHHHhchhcCCCeEEec--------CCCCCCCccccccccceeeee
Q 013515 384 I-HQVENEDVIKSVLPIAMSFGFQLAT--------PFPNGTAEASQFLKALSIYFE 430 (441)
Q Consensus 384 ~-~~~ENe~vV~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~f~ 430 (441)
+ |..-..+-..++|+ ..+|+... ..-+|... +..+.-++++|.
T Consensus 188 ~y~~sl~~~~y~~~l~---~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 239 (279)
T PHA03411 188 YYDGTMKSNKYLKWSK---QTGLVTYAGCGIDTSIYRDEWHST-NVLTEVVEVRYY 239 (279)
T ss_pred cccccCCHHHHHHHHH---hcCcEecCCCCcccceehhhccCC-CccceEEEEEec
Confidence 4 55555666677774 45666533 13356543 333455667775
No 99
>PHA03412 putative methyltransferase; Provisional
Probab=98.95 E-value=3.7e-09 Score=99.01 Aligned_cols=172 Identities=16% Similarity=0.195 Sum_probs=105.9
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhc--CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~--~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
|+..+.+..++.. ...+.+|||+|||+|..++.++..+. +...|+|+|+++.+++.+++|+. ++.++++|
T Consensus 34 fTP~~iAr~~~i~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D 105 (241)
T PHA03412 34 FTPIGLARDFTID---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINAD 105 (241)
T ss_pred CCCHHHHHHHHHh---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcc
Confidence 4445444443322 23478999999999999999988653 34699999999999999998753 47788999
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEE--
Q 013515 301 FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVV-- 378 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lv-- 378 (441)
+...... .+||.|+.+||..-... .|.. . + ..-...-..++..|.+++++|.+|
T Consensus 106 ~~~~~~~----~~FDlIIsNPPY~~~~~----~d~~-a--------r-------~~g~~~~~~li~~A~~Ll~~G~~ILP 161 (241)
T PHA03412 106 ALTTEFD----TLFDMAISNPPFGKIKT----SDFK-G--------K-------YTGAEFEYKVIERASQIARQGTFIIP 161 (241)
T ss_pred hhccccc----CCccEEEECCCCCCccc----cccC-C--------c-------ccccHHHHHHHHHHHHHcCCCEEEeC
Confidence 9865431 57999999999865431 1100 0 0 001233456778888877755433
Q ss_pred -------EEcCCCCC-hhc--HHHHHHHhchhcCCCeEEec--------CCCCCCCccccccccceeeee
Q 013515 379 -------YSTCSIHQ-VEN--EDVIKSVLPIAMSFGFQLAT--------PFPNGTAEASQFLKALSIYFE 430 (441)
Q Consensus 379 -------YsTCS~~~-~EN--e~vV~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~f~ 430 (441)
||-|-... +|| ..-+.+|++ +-+++... ..-+|... +....-++++|.
T Consensus 162 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 227 (241)
T PHA03412 162 QMSANFRYSGTHYFRQDESTTSSKCKKFLD---ETGLEMNPGCGIDTGYYLEDWKGV-KPLCEVVCMEFN 227 (241)
T ss_pred cccccCcccCccceeeccCcccHHHHHHHH---hcCeeecCCCCccceeehhhccCC-CccceEEEEeec
Confidence 66665541 232 234556664 33443322 13356543 333455667765
No 100
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.94 E-value=8.1e-09 Score=95.34 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=67.6
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
+..+...+.+.++.+|||+|||+|..+..+++. ..+|+|+|+++.+++.++++.+..|++ +.+...|....+..
T Consensus 19 ~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~-- 92 (195)
T TIGR00477 19 HSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAALN-- 92 (195)
T ss_pred hHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcccc--
Confidence 334445666667789999999999999999975 369999999999999999999888875 77778887654432
Q ss_pred CCCCccEEEEcCC
Q 013515 310 AYSEVRAILLDPS 322 (441)
Q Consensus 310 ~~~~fD~Il~DpP 322 (441)
.+||.|++..+
T Consensus 93 --~~fD~I~~~~~ 103 (195)
T TIGR00477 93 --EDYDFIFSTVV 103 (195)
T ss_pred --CCCCEEEEecc
Confidence 56999986544
No 101
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.94 E-value=2.7e-09 Score=96.26 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
-.|.+|||++||+|..++..+.+ +..+++.+|.+.+.+..+++|++.+++ .+++++..|+..........+.||.|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 46999999999999999988775 568999999999999999999999995 578889999885533332224599999
Q ss_pred EcCCC
Q 013515 319 LDPSC 323 (441)
Q Consensus 319 ~DpPC 323 (441)
+|||.
T Consensus 120 lDPPy 124 (187)
T COG0742 120 LDPPY 124 (187)
T ss_pred eCCCC
Confidence 99996
No 102
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.93 E-value=8.6e-10 Score=100.59 Aligned_cols=81 Identities=25% Similarity=0.373 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC-CCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD-PAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~-~~~~~fD~Il 318 (441)
+|.+|||+|||+|..++....+ ++.+|+.+|.++..++.+++|++.+++.+ ++++..|+....... ....+||.|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 6999999999999999987665 56899999999999999999999999865 889999965443211 0126899999
Q ss_pred EcCCC
Q 013515 319 LDPSC 323 (441)
Q Consensus 319 ~DpPC 323 (441)
+|||.
T Consensus 120 lDPPY 124 (183)
T PF03602_consen 120 LDPPY 124 (183)
T ss_dssp E--ST
T ss_pred ECCCc
Confidence 99996
No 103
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=5.2e-09 Score=103.28 Aligned_cols=79 Identities=25% Similarity=0.360 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.+|++|+||+||-|.+|+.+|..- ..+|+|+|++|..++.+++|++.+++.+ |.++++|+..+.+.. ..||+|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---GVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---ccCCEEE
Confidence 459999999999999999999873 3349999999999999999999999976 899999999988764 6799999
Q ss_pred EcCCC
Q 013515 319 LDPSC 323 (441)
Q Consensus 319 ~DpPC 323 (441)
+.-|-
T Consensus 262 m~~p~ 266 (341)
T COG2520 262 MGLPK 266 (341)
T ss_pred eCCCC
Confidence 98884
No 104
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=98.92 E-value=7e-09 Score=95.31 Aligned_cols=107 Identities=13% Similarity=0.194 Sum_probs=76.9
Q ss_pred HHHHHHHHHHccChhhHHHHhhhhhhcCCCccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccc------cchHHHHHH
Q 013515 37 EAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW------KRQEELVYI 110 (441)
Q Consensus 37 ~A~~vL~~v~~~~~~~~~~~~~~~~~~~~~~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~------~~~~~lL~l 110 (441)
.|.+.-+++.+|.+.+..+..+... .....+++|+++|||||+|++..||++|.+ +++ +| ..++.+||+
T Consensus 82 ~~~~~~~~~~ng~s~~~~lp~ll~~--~~q~~~r~~a~~Lv~gvlr~~~~LD~iI~~--~l~-~W~l~rL~~idr~ILRl 156 (207)
T PRK09634 82 EALTLAETAINRLSAALELPELLQL--ADQEEVREYALERIGAVIRNRKEIDQLLDT--VMV-GWQLKRLPRIDRDILRL 156 (207)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHhHHHHHHHHHH--Hhc-cccccCCCHHHHHHHHH
Confidence 3555556666665555444443221 122578999999999999999999999998 454 23 345889999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHhhHHH---HHHHHHHHHHc
Q 013515 111 LTYDILFGQEISLVGDAEKFLMLHKGAI---QLALAQLLVRN 149 (441)
Q Consensus 111 ~~yql~f~~~ip~~~~i~~~v~~~k~~~---~~~l~~~~~~~ 149 (441)
|+||++|++ +|.++.||++|+.+|..- ...|.|.+.++
T Consensus 157 avyELl~l~-~P~~vaINEAVeLAK~~~~~~~~~FVNaVLrr 197 (207)
T PRK09634 157 AVVEILFLN-TPAAVAINEAVELAKRYSDEQGRRFINGVLRR 197 (207)
T ss_pred HHHHHHhcC-CCchhHHHHHHHHHHHhCCCcccchHHHHHHH
Confidence 999999995 899999999999987521 13455555554
No 105
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.92 E-value=6.4e-09 Score=93.72 Aligned_cols=84 Identities=24% Similarity=0.343 Sum_probs=71.7
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
.++..+++.++++|||+|||+|..|..+++. .++|+++|+++.+++.+++++.. .++++++++|+.+++...
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~--- 75 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPK--- 75 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccc---
Confidence 3455677888999999999999999999886 36899999999999999999864 358999999999887543
Q ss_pred CCccEEEEcCCC
Q 013515 312 SEVRAILLDPSC 323 (441)
Q Consensus 312 ~~fD~Il~DpPC 323 (441)
..||.|+.|||.
T Consensus 76 ~~~d~vi~n~Py 87 (169)
T smart00650 76 LQPYKVVGNLPY 87 (169)
T ss_pred cCCCEEEECCCc
Confidence 468999999996
No 106
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.91 E-value=2.8e-09 Score=97.92 Aligned_cols=82 Identities=20% Similarity=0.147 Sum_probs=67.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC-CCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD-PAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~-~~~~~fD~Il 318 (441)
.|.+|||+|||+|..++.++.+ +...|+++|.++..++.+++|++.+++. +++++++|+....... .....||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 5889999999999999998886 3468999999999999999999999985 6899999996542211 0112489999
Q ss_pred EcCCCC
Q 013515 319 LDPSCS 324 (441)
Q Consensus 319 ~DpPCS 324 (441)
+|||..
T Consensus 127 ~DPPy~ 132 (189)
T TIGR00095 127 LDPPFF 132 (189)
T ss_pred ECcCCC
Confidence 999974
No 107
>COG0781 NusB Transcription termination factor [Transcription]
Probab=98.91 E-value=8.3e-09 Score=90.49 Aligned_cols=102 Identities=16% Similarity=0.207 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHccChhh--HHHHhhhhh-hc-CCC--ccCHHHHHHHHHHHHhcHHHHHHHhhhhhcccccccc--
Q 013515 32 YFARREAAKVLRLVLRGDARR--RAVGSIKSL-VY-SPS--VKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKR-- 103 (441)
Q Consensus 32 ~~~R~~A~~vL~~v~~~~~~~--~~~~~~~~~-~~-~~~--~~dr~~~~~Lv~GvlR~~~~Ld~il~~~~~l~~~~~~-- 103 (441)
..+|..|+++|++++.++... ++...+... .. ..+ ..+..|+..|+.||++++..||.+|.+ ++.. |..
T Consensus 11 ~~aR~~avq~Ly~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~--~L~~-w~~~r 87 (151)
T COG0781 11 RQARELAVQALYQWELSGSVSAEDILEDIEEEFVENELDIELADSEYFRSLVKGVLENQEELDELISP--HLKK-WSLER 87 (151)
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHcc-CCHHH
Confidence 349999999999998854421 222211111 01 111 157899999999999999999999998 5564 542
Q ss_pred ----hHHHHHHHHHHHHhcCCCCchHHHHHHHHHhhH
Q 013515 104 ----QEELVYILTYDILFGQEISLVGDAEKFLMLHKG 136 (441)
Q Consensus 104 ----~~~lL~l~~yql~f~~~ip~~~~i~~~v~~~k~ 136 (441)
.+.+||+++||++|.+++|....|||+|+.+|.
T Consensus 88 L~~verAILRla~yEl~~~~dvP~~VvInEaielaK~ 124 (151)
T COG0781 88 LDLVERAILRLALYELLFRDDVPYKVVINEAIELAKK 124 (151)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 388999999999999889999999999999885
No 108
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.90 E-value=3.5e-08 Score=94.99 Aligned_cols=89 Identities=15% Similarity=0.207 Sum_probs=71.1
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
..|...+..+...+.+.++.+|||+|||+|..+..++... +.++|+++|+++.+++.+++++ .++.++.+|+..
T Consensus 14 ~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~ 87 (258)
T PRK01683 14 DERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIAS 87 (258)
T ss_pred HHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhc
Confidence 3455556566666777889999999999999999999875 4479999999999999998764 467888999987
Q ss_pred CCCCCCCCCCccEEEEcCC
Q 013515 304 LDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpP 322 (441)
+... .+||.|+++..
T Consensus 88 ~~~~----~~fD~v~~~~~ 102 (258)
T PRK01683 88 WQPP----QALDLIFANAS 102 (258)
T ss_pred cCCC----CCccEEEEccC
Confidence 6432 57999997654
No 109
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.89 E-value=1e-08 Score=98.40 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=85.8
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
.+|...+..+...+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++.. .+.++++|+..
T Consensus 25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~ 96 (251)
T PRK10258 25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCccc
Confidence 478888888888887767889999999999999888764 3689999999999999887643 24578899988
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
++..+ ++||.|+...+ +..-+| ...+|..+.+.++ ||.++++|
T Consensus 97 ~~~~~---~~fD~V~s~~~------l~~~~d--------------------------~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 97 LPLAT---ATFDLAWSNLA------VQWCGN--------------------------LSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CcCCC---CcEEEEEECch------hhhcCC--------------------------HHHHHHHHHHHcCCCeEEEEEe
Confidence 76543 67999986433 100000 1366777888777 68888875
No 110
>PRK08317 hypothetical protein; Provisional
Probab=98.89 E-value=4.5e-08 Score=92.34 Aligned_cols=115 Identities=24% Similarity=0.254 Sum_probs=85.3
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 312 (441)
+...+.+.++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++... ...++.+..+|+...+... +
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~---~ 86 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPD---G 86 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCC---C
Confidence 34567788899999999999999999999875568999999999999999888333 2357899999988766433 6
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
.||.|+++-- +..-+ . +..+++.+.+.++ ||.++.+.+.
T Consensus 87 ~~D~v~~~~~------~~~~~----------------~----------~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 87 SFDAVRSDRV------LQHLE----------------D----------PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CceEEEEech------hhccC----------------C----------HHHHHHHHHHHhcCCcEEEEEecC
Confidence 7999987422 11000 0 1356777777776 7888877653
No 111
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.87 E-value=2.6e-08 Score=95.42 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
.++.+|||+|||+|..+..+++.+ .+..+|+++|+++.|++.++++++..|.. ++.++++|+.+++. ..+|.|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~v 129 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----ENASMV 129 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----CCCCEE
Confidence 478899999999999999888754 35689999999999999999999988864 79999999987653 347888
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++.-. ...+ .. ..+..++....+.|+ ||.++.+..
T Consensus 130 v~~~~---l~~l--------------------~~-------~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 130 VLNFT---LQFL--------------------EP-------SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred ehhhH---HHhC--------------------CH-------HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 74211 1110 01 113467888888777 788877753
No 112
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.86 E-value=5.7e-08 Score=93.26 Aligned_cols=117 Identities=20% Similarity=0.255 Sum_probs=79.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+.+|.+|||+|||+|..+..++.. + ..+|+|+|+++.+++.+++|++.+++ .++.+..+| .+||.|
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----------~~fD~V 183 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----------LKADVI 183 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----------CCcCEE
Confidence 467999999999999888876654 3 35799999999999999999999887 344433222 168999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHH
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~ 396 (441)
+++... + ....++..+.++++ ||.++.|... .+ ..+-+...
T Consensus 184 vani~~----------------------------~-------~~~~l~~~~~~~LkpgG~lilsgi~--~~-~~~~v~~~ 225 (250)
T PRK00517 184 VANILA----------------------------N-------PLLELAPDLARLLKPGGRLILSGIL--EE-QADEVLEA 225 (250)
T ss_pred EEcCcH----------------------------H-------HHHHHHHHHHHhcCCCcEEEEEECc--Hh-hHHHHHHH
Confidence 975320 0 01355677777776 7888887443 23 33333344
Q ss_pred hchhcCCCeEEec
Q 013515 397 LPIAMSFGFQLAT 409 (441)
Q Consensus 397 l~~~~~~~~~~~~ 409 (441)
+ ...+|++..
T Consensus 226 l---~~~Gf~~~~ 235 (250)
T PRK00517 226 Y---EEAGFTLDE 235 (250)
T ss_pred H---HHCCCEEEE
Confidence 4 245777654
No 113
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.85 E-value=1.2e-07 Score=93.52 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=81.1
Q ss_pred HHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCCCCCCCC
Q 013515 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-~~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
..+++.+|.+|||+|||+|..+..++.. +...|+++|+++.++..++..-+..+ ..++.+...++.+++.. ..
T Consensus 115 ~~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~----~~ 188 (314)
T TIGR00452 115 PHLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL----YA 188 (314)
T ss_pred HhcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC----CC
Confidence 3456778999999999999999888765 33589999999999876544333222 24677888888877643 47
Q ss_pred ccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChh
Q 013515 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVE 388 (441)
Q Consensus 314 fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~E 388 (441)
||.|++ .|++-+.+| + ...|..+.+.++ ||.||.+|..+...+
T Consensus 189 FD~V~s------~gvL~H~~d----------------p----------~~~L~el~r~LkpGG~Lvletl~i~g~~ 232 (314)
T TIGR00452 189 FDTVFS------MGVLYHRKS----------------P----------LEHLKQLKHQLVIKGELVLETLVIDGDL 232 (314)
T ss_pred cCEEEE------cchhhccCC----------------H----------HHHHHHHHHhcCCCCEEEEEEEEecCcc
Confidence 999984 455433221 1 246777777776 899998876655443
No 114
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.85 E-value=1.9e-09 Score=100.02 Aligned_cols=93 Identities=23% Similarity=0.388 Sum_probs=74.4
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC-
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK- 307 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~- 307 (441)
.+++..++......+||++|++.|..|++||+.+++.++|+++|+++++.+.+++++++.|+ ++|+++.+|+.+..+.
T Consensus 34 g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l 113 (205)
T PF01596_consen 34 GQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPEL 113 (205)
T ss_dssp HHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHH
Confidence 34444444444566999999999999999999888789999999999999999999999998 5799999999865321
Q ss_pred --CCCCCCccEEEEcCC
Q 013515 308 --DPAYSEVRAILLDPS 322 (441)
Q Consensus 308 --~~~~~~fD~Il~DpP 322 (441)
....+.||.|++|+.
T Consensus 114 ~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 114 ANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp HHTTTTTSEEEEEEEST
T ss_pred HhccCCCceeEEEEccc
Confidence 111257999999997
No 115
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.85 E-value=2.1e-07 Score=92.52 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=80.9
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~ 310 (441)
.+...+.+..|.+|||+|||+|..+..++.. +...|+++|+++.++...+...+..+. .+|.++.+|+.+++. .
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~-- 187 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-L-- 187 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-c--
Confidence 3344666667899999999999999999886 235799999999988765544443332 478999999988875 2
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++||.|++ .|++-+..| + ..+|..+.+.++ ||.+|.+|-
T Consensus 188 -~~FD~V~s------~~vl~H~~d----------------p----------~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 188 -KAFDTVFS------MGVLYHRRS----------------P----------LDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred -CCcCEEEE------CChhhccCC----------------H----------HHHHHHHHHhcCCCcEEEEEEE
Confidence 67999984 344432111 1 356777777666 788887753
No 116
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.85 E-value=1.9e-08 Score=96.71 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=64.4
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
.-+...+.+.++.+|||+|||+|..+..++... +.++|+++|+++.+++.+++. ++.++++|+.++.+ .
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-~-- 87 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP-K-- 87 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC-C--
Confidence 344556677889999999999999999999876 457999999999999988652 46788999987642 2
Q ss_pred CCCccEEEEcCC
Q 013515 311 YSEVRAILLDPS 322 (441)
Q Consensus 311 ~~~fD~Il~DpP 322 (441)
++||.|++...
T Consensus 88 -~~fD~v~~~~~ 98 (255)
T PRK14103 88 -PDTDVVVSNAA 98 (255)
T ss_pred -CCceEEEEehh
Confidence 67999998655
No 117
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.84 E-value=7e-08 Score=94.59 Aligned_cols=131 Identities=13% Similarity=0.111 Sum_probs=87.4
Q ss_pred hHHHHHHhC--CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC
Q 013515 230 SSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP 306 (441)
Q Consensus 230 s~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~ 306 (441)
..+....+. ..+|.+|||+|||+|..+..++.+ +..+|+|+|+++.+++.+++|++.+++. ++.+...|....
T Consensus 146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-- 221 (288)
T TIGR00406 146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-- 221 (288)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc--
Confidence 344444433 457899999999999999887764 3469999999999999999999999885 466666653221
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
. .++||.|+++..+ .. ...++..+.++++ ||.++.|.. .
T Consensus 222 ~---~~~fDlVvan~~~----------------------------~~-------l~~ll~~~~~~LkpgG~li~sgi--~ 261 (288)
T TIGR00406 222 I---EGKADVIVANILA----------------------------EV-------IKELYPQFSRLVKPGGWLILSGI--L 261 (288)
T ss_pred c---CCCceEEEEecCH----------------------------HH-------HHHHHHHHHHHcCCCcEEEEEeC--c
Confidence 1 1579999987531 00 1356677777776 788887653 3
Q ss_pred ChhcHHHHHHHhchhcCCCeEEec
Q 013515 386 QVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 386 ~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
. +....|...++ .. |+++.
T Consensus 262 ~-~~~~~v~~~~~---~~-f~~~~ 280 (288)
T TIGR00406 262 E-TQAQSVCDAYE---QG-FTVVE 280 (288)
T ss_pred H-hHHHHHHHHHH---cc-Cceee
Confidence 3 33344444443 23 65544
No 118
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.84 E-value=6.7e-09 Score=96.61 Aligned_cols=105 Identities=18% Similarity=0.172 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
-+|.+|||+|||-|..+..||++ +..|+|+|++++.++.++......|+. |...+..+.++.... ++||+|++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~~---~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASAG---GQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHhcC---CCccEEEE
Confidence 46999999999999999999987 279999999999999999999998874 556666666655432 68999984
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
.-|+-+-||. ..+++++.++++ +|.++.||=.
T Consensus 131 ------mEVlEHv~dp--------------------------~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 131 ------MEVLEHVPDP--------------------------ESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred ------hhHHHccCCH--------------------------HHHHHHHHHHcCCCcEEEEeccc
Confidence 3344332321 358999999988 6899998754
No 119
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.83 E-value=1.8e-08 Score=96.99 Aligned_cols=76 Identities=25% Similarity=0.437 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.++.+|||+|||+|..+..++.. ..+|+++|+++++++.++++++..|+ ++++++++|+.++.... .++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~--~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL--ETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc--CCCCCEEE
Confidence 45789999999999999999886 36899999999999999999999887 57999999998765322 16799999
Q ss_pred Ec
Q 013515 319 LD 320 (441)
Q Consensus 319 ~D 320 (441)
+.
T Consensus 118 ~~ 119 (255)
T PRK11036 118 FH 119 (255)
T ss_pred eh
Confidence 64
No 120
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.83 E-value=4.5e-08 Score=94.64 Aligned_cols=95 Identities=17% Similarity=0.126 Sum_probs=73.7
Q ss_pred hhcCcccccch-hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 013515 218 IVNGCVFLQGK-ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 296 (441)
Q Consensus 218 ~~~g~~~~Qd~-ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~ 296 (441)
|-.|++..... ....++..+.+.++.+|||+|||+|+.+..++... ..+|+++|+++.+++.++++... ..++.+
T Consensus 28 ~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~ 103 (263)
T PTZ00098 28 FGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEF 103 (263)
T ss_pred hCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEE
Confidence 44455555432 34455566788999999999999999999888753 36999999999999999988654 257899
Q ss_pred EeccCCCCCCCCCCCCCccEEEE
Q 013515 297 LHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 297 ~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++|+...+..+ ++||+|++
T Consensus 104 ~~~D~~~~~~~~---~~FD~V~s 123 (263)
T PTZ00098 104 EANDILKKDFPE---NTFDMIYS 123 (263)
T ss_pred EECCcccCCCCC---CCeEEEEE
Confidence 999998765433 68999986
No 121
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.83 E-value=1.1e-07 Score=89.93 Aligned_cols=86 Identities=23% Similarity=0.356 Sum_probs=70.4
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~ 309 (441)
..+...+.+.++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+. .++.++.+|+.+.+...
T Consensus 41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~- 119 (239)
T PRK00216 41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD- 119 (239)
T ss_pred HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC-
Confidence 3445566677889999999999999999998864357999999999999999999887655 46889999998766432
Q ss_pred CCCCccEEEE
Q 013515 310 AYSEVRAILL 319 (441)
Q Consensus 310 ~~~~fD~Il~ 319 (441)
+.||.|++
T Consensus 120 --~~~D~I~~ 127 (239)
T PRK00216 120 --NSFDAVTI 127 (239)
T ss_pred --CCccEEEE
Confidence 67999975
No 122
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.83 E-value=2.2e-08 Score=98.05 Aligned_cols=97 Identities=25% Similarity=0.272 Sum_probs=80.8
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDF 301 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-~~~v~~~~~D~ 301 (441)
|.++......++..+++.+++.|||+|||+|..|..++.. ..+|+|+|+|+.+++.+++++...+ .++++++++|+
T Consensus 18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 3444445566777788889999999999999999999876 3689999999999999999998877 47899999999
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCc
Q 013515 302 LNLDPKDPAYSEVRAILLDPSCSGSG 327 (441)
Q Consensus 302 ~~~~~~~~~~~~fD~Il~DpPCSg~G 327 (441)
...+. ..||.|+.++|...+.
T Consensus 95 l~~~~-----~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 95 LKTEF-----PYFDVCVANVPYQISS 115 (294)
T ss_pred hhhcc-----cccCEEEecCCcccCc
Confidence 87652 4589999999987554
No 123
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=6e-08 Score=93.98 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=91.4
Q ss_pred hhHHHHHHhC--CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCC
Q 013515 229 ASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLD 305 (441)
Q Consensus 229 ss~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~ 305 (441)
...+....|+ .++|.+|||+|||+|-.++.++.+ +..+|+|+|+|+-+++.+++|++++|+.. +.....+....+
T Consensus 148 TT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~ 225 (300)
T COG2264 148 TTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP 225 (300)
T ss_pred hHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc
Confidence 3445555554 358999999999999999887776 56899999999999999999999999864 222222222222
Q ss_pred CCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 306 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 306 ~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
. .++||+|+++- |+..=.++.......++ +|+++.|= |
T Consensus 226 ~----~~~~DvIVANI-----------------------------------LA~vl~~La~~~~~~lkpgg~lIlSG--I 264 (300)
T COG2264 226 E----NGPFDVIVANI-----------------------------------LAEVLVELAPDIKRLLKPGGRLILSG--I 264 (300)
T ss_pred c----cCcccEEEehh-----------------------------------hHHHHHHHHHHHHHHcCCCceEEEEe--e
Confidence 1 25899998643 12222355555666666 78999875 5
Q ss_pred CChhcHHHHHHHhchhcCCCeEEecC
Q 013515 385 HQVENEDVIKSVLPIAMSFGFQLATP 410 (441)
Q Consensus 385 ~~~ENe~vV~~~l~~~~~~~~~~~~~ 410 (441)
..+. ++.|...++ +.+|++++.
T Consensus 265 l~~q-~~~V~~a~~---~~gf~v~~~ 286 (300)
T COG2264 265 LEDQ-AESVAEAYE---QAGFEVVEV 286 (300)
T ss_pred hHhH-HHHHHHHHH---hCCCeEeEE
Confidence 5555 555555542 457887653
No 124
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.82 E-value=2.1e-08 Score=99.31 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=63.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
.+.+|.+|||+|||+|..+..++.. ...|+++|+++++++.++.+.+..+. .+|.++++|+.+++... ++||+
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~---~~FD~ 201 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG---RKFDA 201 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc---CCCCE
Confidence 3567889999999999999988864 36999999999999999988776554 57999999998876443 68999
Q ss_pred EEE
Q 013515 317 ILL 319 (441)
Q Consensus 317 Il~ 319 (441)
|++
T Consensus 202 Vi~ 204 (322)
T PLN02396 202 VLS 204 (322)
T ss_pred EEE
Confidence 984
No 125
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.81 E-value=1.4e-08 Score=98.45 Aligned_cols=88 Identities=22% Similarity=0.290 Sum_probs=66.1
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFL 302 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~ 302 (441)
..|..--..++..++++||++|||+|||-|+.+..+++.. ..+|+++.+|++..+.+++.+++.|+ +.+++...|..
T Consensus 45 ~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~ 122 (273)
T PF02353_consen 45 EAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR 122 (273)
T ss_dssp HHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc
Confidence 3444455677778889999999999999999999999986 36999999999999999999999998 46999999998
Q ss_pred CCCCCCCCCCCccEEEE
Q 013515 303 NLDPKDPAYSEVRAILL 319 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~ 319 (441)
+++ .+||+|+.
T Consensus 123 ~~~------~~fD~IvS 133 (273)
T PF02353_consen 123 DLP------GKFDRIVS 133 (273)
T ss_dssp G---------S-SEEEE
T ss_pred ccC------CCCCEEEE
Confidence 765 37999974
No 126
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.80 E-value=6.1e-08 Score=89.34 Aligned_cols=143 Identities=24% Similarity=0.251 Sum_probs=98.4
Q ss_pred hHHHHHHh------CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 230 SSMVAAAL------APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 230 s~l~~~~l------~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
|-|++.++ .+++|.+||-+||++|..-.|++..++..|.|+|+|.++...+.+-+.+++. +||..+.+|+..
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~ 133 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARH 133 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTS
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCC
Confidence 55555553 3678999999999999999999999998899999999999999888777765 589999999987
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHH-HHHHHhCCCC-CcEEEEE-
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK-ALRHALSFPG-VERVVYS- 380 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~-lL~~a~~~~~-~G~lvYs- 380 (441)
...-..-.+.+|+|+.|.. .|| |.+ ++.+|-.+|| +|.++-+
T Consensus 134 P~~Y~~lv~~VDvI~~DVa---------Qp~--------------------------Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 134 PEKYRMLVEMVDVIFQDVA---------QPD--------------------------QARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp GGGGTTTS--EEEEEEE-S---------STT--------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHhhcccccccEEEecCC---------ChH--------------------------HHHHHHHHHHhhccCCcEEEEEE
Confidence 6533222468999999988 222 233 3455555777 6755443
Q ss_pred --cCCCCChhcHHHHHHHhchhcCCCeEEec
Q 013515 381 --TCSIHQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 381 --TCS~~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
.|-=...+.+.+.+...+.....+|++.+
T Consensus 179 Ka~siD~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 179 KARSIDSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp EHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred ecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 33334456677777777666666777644
No 127
>PLN03075 nicotianamine synthase; Provisional
Probab=98.78 E-value=6.9e-08 Score=93.83 Aligned_cols=107 Identities=11% Similarity=0.034 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCCchHHHHH-HHHhcCCcEEEEEeCCHHHHHHHHHHHHH-hCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 241 PGWKVLDACSAPGNKTVHL-AALMKGKGKIVACELNKERVRRLKDTIKL-SGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~l-a~~~~~~~~V~a~D~~~~rl~~l~~~~~~-~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
++++|+|+|||||+.|..+ ++...+.++++++|+++++++.++++++. .|+ ++|++..+|+.+..... +.||.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l---~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESL---KEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccccc---CCcCEE
Confidence 6789999999999876554 43445678999999999999999999965 777 45999999998864332 679999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEc
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYST 381 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsT 381 (441)
+++ -+ .|.-. ..+.++|++..+.++ ||.+++-+
T Consensus 200 F~~-AL--i~~dk----------------------------~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLA-AL--VGMDK----------------------------EEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEe-cc--ccccc----------------------------ccHHHHHHHHHHhcCCCcEEEEec
Confidence 998 22 11100 112578888888776 78888876
No 128
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.77 E-value=3.9e-08 Score=93.67 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=80.2
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD 305 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~ 305 (441)
....++...++......+||++|++.|..|++||..+++.|+|+++|.++++.+.+++++++.|+ ++|+++.+|+.+..
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 45566766677666677999999999999999999887789999999999999999999999997 67999999997754
Q ss_pred CCCC----CCCCccEEEEcCC
Q 013515 306 PKDP----AYSEVRAILLDPS 322 (441)
Q Consensus 306 ~~~~----~~~~fD~Il~DpP 322 (441)
+... ..++||.|++|+-
T Consensus 145 ~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred HHHHhccccCCcccEEEecCC
Confidence 3210 0158999999976
No 129
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.77 E-value=4e-08 Score=94.47 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=93.6
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN 303 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~ 303 (441)
-|-..-.++...|.++||++|||+|||-|+.+.++|+.. ..+|+++++|++..+.+++.++..|+. +|++...|-.+
T Consensus 56 AQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd 133 (283)
T COG2230 56 AQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133 (283)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc
Confidence 344455677778899999999999999999999999985 379999999999999999999999996 89999999887
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
+. +.||+|+ +.|++-.- .. +--...++.+.+.|+ +|.++--|-
T Consensus 134 ~~------e~fDrIv------SvgmfEhv-----------------g~-------~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 134 FE------EPFDRIV------SVGMFEHV-----------------GK-------ENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred cc------cccceee------ehhhHHHh-----------------Cc-------ccHHHHHHHHHhhcCCCceEEEEEe
Confidence 66 4599997 46766321 01 111356777777776 676665444
Q ss_pred C
Q 013515 383 S 383 (441)
Q Consensus 383 S 383 (441)
+
T Consensus 178 ~ 178 (283)
T COG2230 178 T 178 (283)
T ss_pred c
Confidence 3
No 130
>PLN02672 methionine S-methyltransferase
Probab=98.75 E-value=1.3e-07 Score=105.98 Aligned_cols=169 Identities=10% Similarity=0.045 Sum_probs=105.9
Q ss_pred cccccchhhHHHHHHhCCC-----CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-----
Q 013515 222 CVFLQGKASSMVAAALAPK-----PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----- 291 (441)
Q Consensus 222 ~~~~Qd~ss~l~~~~l~~~-----~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~----- 291 (441)
.++..+.+-.++-. +... ++.+|||+|||+|..++.++.... ..+|+|+|+++.+++.+++|++.+++
T Consensus 95 VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~ 172 (1082)
T PLN02672 95 IFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGL 172 (1082)
T ss_pred cccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccc
Confidence 34444444444443 3322 256899999999999999998854 46999999999999999999998753
Q ss_pred -----------CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCccccc-ccCccCCCCCCCCCCCcccHHHH-----
Q 013515 292 -----------ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAE-RLDHLLPSHASGHTADPTEMERL----- 354 (441)
Q Consensus 292 -----------~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~-~pd~~~~~~~~~~~~~~~~~~~~----- 354 (441)
++|+++++|..+..... ..+||+|+.+||.-..+-... .|+++-.+.. ....+......+
T Consensus 173 ~~~~~~~~~l~~rV~f~~sDl~~~~~~~--~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~-~~~~~~~p~~AL~g~~~ 249 (1082)
T PLN02672 173 PVYDGEGKTLLDRVEFYESDLLGYCRDN--NIELDRIVGCIPQILNPNPEAMSKLVTENASE-EFLYSLSNYCALQGFVE 249 (1082)
T ss_pred cccccccccccccEEEEECchhhhcccc--CCceEEEEECCCcCCCcchhhcChhhhhcccc-ccccccCccccccCCCC
Confidence 36999999987654221 136999999999876553211 1111100000 000000000001
Q ss_pred -HHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhc
Q 013515 355 -NKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLP 398 (441)
Q Consensus 355 -~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~ 398 (441)
..-....++|+..|.++++ +|.++. -+.....+.|.+++++
T Consensus 250 g~dGL~~yr~i~~~a~~~L~pgG~l~l---EiG~~q~~~v~~~l~~ 292 (1082)
T PLN02672 250 DQFGLGLIARAVEEGISVIKPMGIMIF---NMGGRPGQAVCERLFE 292 (1082)
T ss_pred CCcHHHHHHHHHHHHHHhccCCCEEEE---EECccHHHHHHHHHHH
Confidence 2334566889999999887 676664 4455555666645664
No 131
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.75 E-value=1.4e-07 Score=98.95 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=83.4
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
.++..+.+.++.+|||+|||+|..+..++... ..+|+|+|+++.+++.++++....+ .++.+.++|+...+..+
T Consensus 257 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~--- 330 (475)
T PLN02336 257 EFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPD--- 330 (475)
T ss_pred HHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCC---
Confidence 34455667789999999999999999998865 3589999999999999998876433 46899999998766433
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
++||.|++. +++-.-+| ...+|..+.+.++ ||.++.++-
T Consensus 331 ~~fD~I~s~------~~l~h~~d--------------------------~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 331 NSFDVIYSR------DTILHIQD--------------------------KPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CCEEEEEEC------CcccccCC--------------------------HHHHHHHHHHHcCCCeEEEEEEe
Confidence 579999852 22211111 1366788888777 688776653
No 132
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.74 E-value=6e-08 Score=93.55 Aligned_cols=93 Identities=23% Similarity=0.276 Sum_probs=77.0
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~ 302 (441)
|.+.......++..++..+|+.|||+|||+|..|..+++. ..+|+++|+++.+++.+++++.. .++++++++|+.
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~ 85 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDAL 85 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccc
Confidence 3444445666777788889999999999999999999987 26899999999999999988865 468999999998
Q ss_pred CCCCCCCCCCCccEEEEcCCCCC
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSG 325 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg 325 (441)
+++. ..||.|+.++|..-
T Consensus 86 ~~~~-----~~~d~Vv~NlPy~i 103 (258)
T PRK14896 86 KVDL-----PEFNKVVSNLPYQI 103 (258)
T ss_pred cCCc-----hhceEEEEcCCccc
Confidence 8653 34799999999753
No 133
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.73 E-value=4.7e-08 Score=95.02 Aligned_cols=95 Identities=20% Similarity=0.315 Sum_probs=75.1
Q ss_pred ccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 013515 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL 302 (441)
Q Consensus 223 ~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~ 302 (441)
|.+...-...++..+++.+|++|||+|||+|..|..++... .+|+|+|+++.+++.+++++.. ++++++++|+.
T Consensus 24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~ 97 (272)
T PRK00274 24 FLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDAL 97 (272)
T ss_pred cCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhh
Confidence 33333444556667788899999999999999999999873 4899999999999999987743 58999999999
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCC
Q 013515 303 NLDPKDPAYSEVRAILLDPSCSGS 326 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il~DpPCSg~ 326 (441)
+++... ..+|.|+.+||..-+
T Consensus 98 ~~~~~~---~~~~~vv~NlPY~is 118 (272)
T PRK00274 98 KVDLSE---LQPLKVVANLPYNIT 118 (272)
T ss_pred cCCHHH---cCcceEEEeCCccch
Confidence 876432 115899999997543
No 134
>PRK10742 putative methyltransferase; Provisional
Probab=98.73 E-value=1.2e-07 Score=89.29 Aligned_cols=90 Identities=22% Similarity=0.300 Sum_probs=77.3
Q ss_pred hHHHHHHhCCCCCC--EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh------CC---CcEEEEe
Q 013515 230 SSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS------GA---ANIEVLH 298 (441)
Q Consensus 230 s~l~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~------g~---~~v~~~~ 298 (441)
...++.++++++|. +|||++||.|.-++.++.+ +++|+++|.++.....+++++++. +. .++++++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 46778899999998 9999999999999999987 356999999999999999999985 42 5799999
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCCCC
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpPCS 324 (441)
+|...+..... ..||+|++|||..
T Consensus 152 ~da~~~L~~~~--~~fDVVYlDPMfp 175 (250)
T PRK10742 152 ASSLTALTDIT--PRPQVVYLDPMFP 175 (250)
T ss_pred CcHHHHHhhCC--CCCcEEEECCCCC
Confidence 99988765432 4799999999963
No 135
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=6.4e-09 Score=88.70 Aligned_cols=83 Identities=18% Similarity=0.299 Sum_probs=68.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
--.|..++|+|||+|..++..+ +.....|+++|++++.++....|++...+ ++.++++|..+..+.. +.||.++
T Consensus 46 diEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~---g~fDtav 119 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKG---GIFDTAV 119 (185)
T ss_pred cccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccC---CeEeeEE
Confidence 3468999999999999885444 34457999999999999999999999887 4688999998877654 7899999
Q ss_pred EcCCCCCCcccc
Q 013515 319 LDPSCSGSGTAA 330 (441)
Q Consensus 319 ~DpPCSg~G~~~ 330 (441)
+||| .|+-.
T Consensus 120 iNpp---FGTk~ 128 (185)
T KOG3420|consen 120 INPP---FGTKK 128 (185)
T ss_pred ecCC---CCccc
Confidence 9999 56543
No 136
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.72 E-value=2.1e-08 Score=82.18 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=58.7
Q ss_pred EEEEcCCCchHHHHHHHHh--cCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 245 VLDACSAPGNKTVHLAALM--KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 245 VLDl~ag~G~kt~~la~~~--~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
|||+|||+|..+..++..+ ++..+++++|+++.+++.++++....+. +++++++|+.+++... ++||.|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~---~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSD---GKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHS---SSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccC---CCeeEEEE
Confidence 7999999999999999886 2237999999999999999999998877 7899999999987543 68999995
No 137
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.71 E-value=9.5e-08 Score=76.58 Aligned_cols=102 Identities=21% Similarity=0.236 Sum_probs=77.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
+|+|+|||+|..+..++. .+..+++++|+++..+..+++.....+..++.++.+|+.+..... ..+||.|+++++|
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEA--DESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcccc--CCceEEEEEccce
Confidence 489999999999988877 345799999999999999987655555677899999998876411 2679999999998
Q ss_pred CCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEE
Q 013515 324 SGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYS 380 (441)
Q Consensus 324 Sg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYs 380 (441)
... ...+..++..+.+.++ +|.++++
T Consensus 77 ~~~-------------------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHL-------------------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeh-------------------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 642 1223566777777666 6777765
No 138
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.71 E-value=1.8e-07 Score=91.61 Aligned_cols=78 Identities=22% Similarity=0.203 Sum_probs=63.9
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
.+...++.+|||+|||+|..+..++.. ..+|+|+|+++.+++.++++++..++ ++++...|+...... ++||
T Consensus 115 ~~~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~----~~fD 186 (287)
T PRK12335 115 AVQTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQ----EEYD 186 (287)
T ss_pred HhhccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccccc----CCcc
Confidence 333334559999999999999999875 36999999999999999999999888 788888888765432 6799
Q ss_pred EEEEcC
Q 013515 316 AILLDP 321 (441)
Q Consensus 316 ~Il~Dp 321 (441)
.|++-.
T Consensus 187 ~I~~~~ 192 (287)
T PRK12335 187 FILSTV 192 (287)
T ss_pred EEEEcc
Confidence 998644
No 139
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.68 E-value=2.3e-07 Score=88.31 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=63.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
.++.+|||+|||+|..+..+++.+. +..+++++|+++.+++.++++++..+. .+++++++|+..++. ..+|.|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~d~v 126 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASMV 126 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----CCCCEE
Confidence 5788999999999999999988753 458999999999999999999988764 478999999988763 347877
Q ss_pred EE
Q 013515 318 LL 319 (441)
Q Consensus 318 l~ 319 (441)
++
T Consensus 127 ~~ 128 (239)
T TIGR00740 127 IL 128 (239)
T ss_pred ee
Confidence 64
No 140
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.68 E-value=2e-07 Score=87.73 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=94.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEec----cCCCCCCCCCCCCCcc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHG----DFLNLDPKDPAYSEVR 315 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~----D~~~~~~~~~~~~~fD 315 (441)
.+..+||+|||+|..++.++.-++ .++|+|+|.++.++..+.+|++++++ ..+.+++- |...-.+. ..++.|
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l--~~~~~d 224 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPL--LEGKID 224 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccccccc--ccCcee
Confidence 466899999999999999998876 58999999999999999999999998 45666644 33222211 137899
Q ss_pred EEEEcCCCCCCccccc-ccCccCCCCCCCCCCCcccHHHHH---HHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcH
Q 013515 316 AILLDPSCSGSGTAAE-RLDHLLPSHASGHTADPTEMERLN---KLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENE 390 (441)
Q Consensus 316 ~Il~DpPCSg~G~~~~-~pd~~~~~~~~~~~~~~~~~~~~~---~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe 390 (441)
.++.+||+-..--++. +|+++..+ .+-.+. +.-..-..+..-|.++++ ||.+.+.+-- ..+..
T Consensus 225 llvsNPPYI~~dD~~~l~~eV~~yE----------p~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~--~~~~~ 292 (328)
T KOG2904|consen 225 LLVSNPPYIRKDDNRQLKPEVRLYE----------PKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE--RKEHS 292 (328)
T ss_pred EEecCCCcccccchhhcCchheecC----------chhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc--cccCc
Confidence 9999999854322111 22322111 011111 222344556667778777 7899887552 25555
Q ss_pred HHHHHHhc
Q 013515 391 DVIKSVLP 398 (441)
Q Consensus 391 ~vV~~~l~ 398 (441)
..|...+.
T Consensus 293 ~lv~~~m~ 300 (328)
T KOG2904|consen 293 YLVRIWMI 300 (328)
T ss_pred HHHHHHHH
Confidence 67766663
No 141
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.67 E-value=5.4e-07 Score=84.23 Aligned_cols=83 Identities=23% Similarity=0.314 Sum_probs=66.7
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
.....+...++.+|||+|||+|..+..++...+..++++++|+++.+++.++++.. ...++.+..+|+.+.+...
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~--- 104 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFED--- 104 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCC---
Confidence 34445556689999999999999999999886443699999999999999998876 3357889999998876432
Q ss_pred CCccEEEE
Q 013515 312 SEVRAILL 319 (441)
Q Consensus 312 ~~fD~Il~ 319 (441)
++||.|++
T Consensus 105 ~~~D~i~~ 112 (223)
T TIGR01934 105 NSFDAVTI 112 (223)
T ss_pred CcEEEEEE
Confidence 57999985
No 142
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.67 E-value=3.3e-08 Score=79.06 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=53.9
Q ss_pred EEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 246 LDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 246 LDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
||+|||+|..+..+++. +...|+++|+++.+++.++++....+ +.+..+|+.+++..+ ++||.|++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~---~~~~~~d~~~l~~~~---~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG---VSFRQGDAEDLPFPD---NSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST---EEEEESBTTSSSS-T---T-EEEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC---chheeehHHhCcccc---cccccccc
Confidence 89999999999999987 45899999999999999999876543 558999999997665 78999985
No 143
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.67 E-value=1.9e-07 Score=95.08 Aligned_cols=84 Identities=20% Similarity=0.284 Sum_probs=68.0
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~ 304 (441)
.|......+...+++++|++|||+|||+|+.+.++++.. ..+|+++|+++++++.++++++ +. ++++...|...+
T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l 225 (383)
T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL 225 (383)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc
Confidence 344445566677888999999999999999999998864 3589999999999999999885 33 477888888665
Q ss_pred CCCCCCCCCccEEEE
Q 013515 305 DPKDPAYSEVRAILL 319 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~ 319 (441)
. ++||.|+.
T Consensus 226 ~------~~fD~Ivs 234 (383)
T PRK11705 226 N------GQFDRIVS 234 (383)
T ss_pred C------CCCCEEEE
Confidence 2 57999985
No 144
>PRK04457 spermidine synthase; Provisional
Probab=98.66 E-value=2.3e-07 Score=89.59 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
..++.+|||+|+|.|..+..++... +..+|+++|+++..++.+++++...+. ++++++.+|+.++....+ .+||.|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~--~~yD~I 140 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR--HSTDVI 140 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC--CCCCEE
Confidence 3456799999999999999998876 458999999999999999999875543 679999999877644332 579999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
++|.-- +.+. |+. ....+++..+.+.++ +|.++.-.++
T Consensus 141 ~~D~~~-~~~~----~~~-----------------------l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 141 LVDGFD-GEGI----IDA-----------------------LCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred EEeCCC-CCCC----ccc-----------------------cCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 999632 2221 110 002477888888777 6877765444
No 145
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.65 E-value=1.2e-07 Score=93.83 Aligned_cols=107 Identities=23% Similarity=0.295 Sum_probs=74.9
Q ss_pred cCcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHh------cCCcEEEEEeCCHHHHHHHHHHHHHhCC--
Q 013515 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM------KGKGKIVACELNKERVRRLKDTIKLSGA-- 291 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~------~~~~~V~a~D~~~~rl~~l~~~~~~~g~-- 291 (441)
.|.|+=-..-+.+++.++.+.++++|+|-|||+|++...+...+ .....++|+|+++..+..++-|+...|.
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 35554445667888999999999999999999999998887754 2457999999999999999999887775
Q ss_pred CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCc
Q 013515 292 ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSG 327 (441)
Q Consensus 292 ~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G 327 (441)
.+..+..+|....+... ....||.|+.+||-+..+
T Consensus 105 ~~~~i~~~d~l~~~~~~-~~~~~D~ii~NPPf~~~~ 139 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFI-KNQKFDVIIGNPPFGSKE 139 (311)
T ss_dssp BGCEEEES-TTTSHSCT-ST--EEEEEEE--CTCES
T ss_pred ccccccccccccccccc-cccccccccCCCCccccc
Confidence 33467888876554332 126899999999987763
No 146
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.65 E-value=2.5e-07 Score=84.54 Aligned_cols=89 Identities=19% Similarity=0.150 Sum_probs=65.2
Q ss_pred cccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 013515 222 CVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF 301 (441)
Q Consensus 222 ~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~ 301 (441)
.+.....-|.+ ...++.-++.++||+|||.|.-++.+|++ +-.|+|+|+++..++.+++.+++.+++ |+..+.|.
T Consensus 12 ky~~~~~hs~v-~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl 86 (192)
T PF03848_consen 12 KYGLTPTHSEV-LEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADL 86 (192)
T ss_dssp HHTB----HHH-HHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BG
T ss_pred hhCCCCCcHHH-HHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecc
Confidence 34444444553 34566666789999999999999999987 368999999999999999999999986 89999998
Q ss_pred CCCCCCCCCCCCccEEEE
Q 013515 302 LNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 302 ~~~~~~~~~~~~fD~Il~ 319 (441)
.+.... +.||.|+.
T Consensus 87 ~~~~~~----~~yD~I~s 100 (192)
T PF03848_consen 87 NDFDFP----EEYDFIVS 100 (192)
T ss_dssp CCBS-T----TTEEEEEE
T ss_pred hhcccc----CCcCEEEE
Confidence 876643 56999974
No 147
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2e-07 Score=85.49 Aligned_cols=154 Identities=22% Similarity=0.190 Sum_probs=101.1
Q ss_pred hhHHHHHHhC----CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 013515 229 ASSMVAAALA----PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (441)
Q Consensus 229 ss~l~~~~l~----~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~ 304 (441)
++....++.+ .++|..|+|+||+|||.+-.+++.++.+++|+|+|+.+-. .+.+|.++.+|++.-
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~ 97 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDE 97 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCc
Confidence 4444444443 4679999999999999999999999888899999998732 135689999999875
Q ss_pred CCC-----CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 305 DPK-----DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 305 ~~~-----~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
... .-....+|.|+.|+----+|+.. -|-.....+-...++-|...++ +|..|
T Consensus 98 ~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~---------------------~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 98 DTLEKLLEALGGAPVDVVLSDMAPNTSGNRS---------------------VDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred cHHHHHHHHcCCCCcceEEecCCCCcCCCcc---------------------ccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 521 11123479999998766666431 1112333344455666666666 67655
Q ss_pred EEcCCCCChhcHHHHHHHhchhcCCCeEEecCCCCCCCccccc
Q 013515 379 YSTCSIHQVENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQF 421 (441)
Q Consensus 379 YsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 421 (441)
|..+.-++++.+-+.+. ..|+.+.....|..+..+.
T Consensus 157 ---~K~fqg~~~~~~l~~~~----~~F~~v~~~KP~aSR~~S~ 192 (205)
T COG0293 157 ---AKVFQGEDFEDLLKALR----RLFRKVKIFKPKASRKRSR 192 (205)
T ss_pred ---EEEEeCCCHHHHHHHHH----HhhceeEEecCccccCCCc
Confidence 45666777776666663 2455555555565555443
No 148
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.64 E-value=1.9e-07 Score=88.19 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=69.1
Q ss_pred cccchhhHHHHHHhCC---CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 013515 224 FLQGKASSMVAAALAP---KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~---~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D 300 (441)
.+|......+...+.. ..+.+|||+|||+|..+..++... +..+++++|+++.+++.+++++. +++.++.+|
T Consensus 14 ~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d 88 (240)
T TIGR02072 14 KIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----ENVQFICGD 88 (240)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecc
Confidence 4565555555544442 345799999999999999999885 45789999999999998887654 367889999
Q ss_pred CCCCCCCCCCCCCccEEEEcCC
Q 013515 301 FLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpP 322 (441)
+...+... ++||+|+++-.
T Consensus 89 ~~~~~~~~---~~fD~vi~~~~ 107 (240)
T TIGR02072 89 AEKLPLED---SSFDLIVSNLA 107 (240)
T ss_pred hhhCCCCC---CceeEEEEhhh
Confidence 98876443 67999997543
No 149
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.61 E-value=9.4e-07 Score=82.95 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=62.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+.++.+|||+|||+|..+..++.. ..+|+++|++++++..+++++...+. .++.+.++|+...+ .+||.|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~fD~i 123 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC------GEFDIV 123 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC------CCcCEE
Confidence 467899999999999999999875 35899999999999999999988776 57999999987754 468999
Q ss_pred EE
Q 013515 318 LL 319 (441)
Q Consensus 318 l~ 319 (441)
++
T Consensus 124 i~ 125 (219)
T TIGR02021 124 VC 125 (219)
T ss_pred EE
Confidence 85
No 150
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.59 E-value=5.5e-07 Score=79.97 Aligned_cols=135 Identities=18% Similarity=0.207 Sum_probs=89.8
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEEEcC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Il~Dp 321 (441)
++|||+|||.|..-..|++--- .+.++++|.++.+++.|+..+++.|.+| |++.+.|+.+..... ++||+|+ |-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~---~qfdlvl-DK 143 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLS---GQFDLVL-DK 143 (227)
T ss_pred cceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccc---cceeEEe-ec
Confidence 3999999999999888887532 3679999999999999999999999987 999999998864332 6788775 22
Q ss_pred CCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchh
Q 013515 322 SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIA 400 (441)
Q Consensus 322 PCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~ 400 (441)
. ..-++.-.||..-.+ + . --+...-++++ +|++|-++|-++..|=.+.+.
T Consensus 144 G--T~DAisLs~d~~~~r--------------~----~---~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~------ 194 (227)
T KOG1271|consen 144 G--TLDAISLSPDGPVGR--------------L----V---VYLDSVEKLLSPGGIFVITSCNFTKDELVEEFE------ 194 (227)
T ss_pred C--ceeeeecCCCCcccc--------------e----e---eehhhHhhccCCCcEEEEEecCccHHHHHHHHh------
Confidence 1 011111223321100 0 1 11333334554 799999999988776555544
Q ss_pred cCCCeEEecCCC
Q 013515 401 MSFGFQLATPFP 412 (441)
Q Consensus 401 ~~~~~~~~~~~~ 412 (441)
+.+|+....+|
T Consensus 195 -~~~f~~~~tvp 205 (227)
T KOG1271|consen 195 -NFNFEYLSTVP 205 (227)
T ss_pred -cCCeEEEEeec
Confidence 34576654443
No 151
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.58 E-value=5.7e-07 Score=89.59 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++.. ..++.++.+|+.+++... ++||.|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~---~sFDvVIs 184 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPT---DYADRYVS 184 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCC---CceeEEEE
Confidence 4688999999999999999888764 3799999999999999998764 346788999998876543 67999987
No 152
>PRK06922 hypothetical protein; Provisional
Probab=98.58 E-value=7.4e-07 Score=94.49 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=68.1
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
...++..+|.+|||+|||+|..+..++... +.++|+|+|+++.+++.++++....+. ++.++++|+.+++...+ .++
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fe-deS 487 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFE-KES 487 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccC-CCC
Confidence 334555678999999999999998888875 458999999999999999998876664 68889999987652211 267
Q ss_pred ccEEEEcCC
Q 013515 314 VRAILLDPS 322 (441)
Q Consensus 314 fD~Il~DpP 322 (441)
||.|++.++
T Consensus 488 FDvVVsn~v 496 (677)
T PRK06922 488 VDTIVYSSI 496 (677)
T ss_pred EEEEEEchH
Confidence 999997654
No 153
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.56 E-value=5.6e-07 Score=84.66 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=60.7
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.+|||+|||+|+.+..+++..+ ..+|+++|+++.+++.++++++..|+ .++.++..|+...+.. ++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~----~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP----DTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC----CCCCEeeh
Confidence 3799999999999999988753 47899999999999999999999887 4689999998655332 57999983
No 154
>PRK00811 spermidine synthase; Provisional
Probab=98.55 E-value=1e-06 Score=86.10 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCCCCCCc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
..+.+|||+|||.|+.+..+++. .+..+|+++|+++.+++.+++++...+ -++++++.+|+..+.... .++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~--~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET--ENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC--CCcc
Confidence 34679999999999999988765 334689999999999999999987643 247999999998765432 2689
Q ss_pred cEEEEcCC
Q 013515 315 RAILLDPS 322 (441)
Q Consensus 315 D~Il~DpP 322 (441)
|+|++|.+
T Consensus 152 DvIi~D~~ 159 (283)
T PRK00811 152 DVIIVDST 159 (283)
T ss_pred cEEEECCC
Confidence 99999975
No 155
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.4e-06 Score=78.69 Aligned_cols=149 Identities=23% Similarity=0.228 Sum_probs=107.0
Q ss_pred ccccchh-hHHHHHHhC------CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q 013515 223 VFLQGKA-SSMVAAALA------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE 295 (441)
Q Consensus 223 ~~~Qd~s-s~l~~~~l~------~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~ 295 (441)
+...++- |-|++.+|. +++|++||=+||++|....|++..++ .|.|+|+|.+++....+-..+++- +||.
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~Ni~ 127 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--PNII 127 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--CCce
Confidence 4444433 555555543 57899999999999999999999987 799999999999999888887764 5899
Q ss_pred EEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH-HHHHhCCCC-
Q 013515 296 VLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA-LRHALSFPG- 373 (441)
Q Consensus 296 ~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l-L~~a~~~~~- 373 (441)
.+.+|+.....-..-.+.+|+|+.|.. .|+ |.+| ..+|-.|++
T Consensus 128 PIL~DA~~P~~Y~~~Ve~VDviy~DVA---------Qp~--------------------------Qa~I~~~Na~~FLk~ 172 (231)
T COG1889 128 PILEDARKPEKYRHLVEKVDVIYQDVA---------QPN--------------------------QAEILADNAEFFLKK 172 (231)
T ss_pred eeecccCCcHHhhhhcccccEEEEecC---------Cch--------------------------HHHHHHHHHHHhccc
Confidence 999999875532222367999999987 221 3444 445556777
Q ss_pred Cc--EEEEEcCCCCChhc-HHHHHHHhchhcCCCeEEec
Q 013515 374 VE--RVVYSTCSIHQVEN-EDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 374 ~G--~lvYsTCS~~~~EN-e~vV~~~l~~~~~~~~~~~~ 409 (441)
+| .++-=.-||...+. ++|.+.-++.....+|++.+
T Consensus 173 ~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 173 GGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred CCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 66 55555677776665 44555566555667787755
No 156
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.54 E-value=2.5e-07 Score=90.45 Aligned_cols=94 Identities=16% Similarity=0.242 Sum_probs=78.5
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC--CC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD--PA 310 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~--~~ 310 (441)
+..+|.+++|+.++|+.+|-||.|..++..+++ ++|+|+|.++.+++.++++++.++ .++.++++++.++.... ..
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~ 89 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELL 89 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcC
Confidence 345677889999999999999999999998765 999999999999999999998764 57999999998876321 11
Q ss_pred CCCccEEEEcCCCCCCcc
Q 013515 311 YSEVRAILLDPSCSGSGT 328 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~ 328 (441)
..++|.|++|-.+|..-.
T Consensus 90 ~~~vDgIl~DLGvSS~Ql 107 (305)
T TIGR00006 90 VTKIDGILVDLGVSSPQL 107 (305)
T ss_pred CCcccEEEEeccCCHhhc
Confidence 257999999999987654
No 157
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.53 E-value=1.4e-06 Score=86.75 Aligned_cols=141 Identities=17% Similarity=0.218 Sum_probs=100.5
Q ss_pred ChhhhcCcccccchh------hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCC----------------------
Q 013515 215 HPLIVNGCVFLQGKA------SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK---------------------- 266 (441)
Q Consensus 215 ~~~~~~g~~~~Qd~s------s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~---------------------- 266 (441)
.++++-||=.-+-.+ +..++.+.+.++++..+|--||+|.+.+..|.+..+-
T Consensus 159 ~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~ 238 (381)
T COG0116 159 DSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD 238 (381)
T ss_pred cchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHH
Confidence 455666654444333 3333445567788899999999999999888765321
Q ss_pred ---------c-------EEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCccc
Q 013515 267 ---------G-------KIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 329 (441)
Q Consensus 267 ---------~-------~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~ 329 (441)
+ .++++|+++.+++.|+.|+++.|+ +.|++.++|+..+.... +.+|+|++|||+- .-
T Consensus 239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~---~~~gvvI~NPPYG-eR-- 312 (381)
T COG0116 239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL---EEYGVVISNPPYG-ER-- 312 (381)
T ss_pred HHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC---CcCCEEEeCCCcc-hh--
Confidence 1 378999999999999999999998 56999999999988653 6789999999972 10
Q ss_pred ccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcC
Q 013515 330 AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTC 382 (441)
Q Consensus 330 ~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~-G~lvYsTC 382 (441)
+. +. .....+...+.....+.+++ +..|++|-
T Consensus 313 -------lg-----------~~---~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 313 -------LG-----------SE---ALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred -------cC-----------Ch---hhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 10 12 33445777777777666664 56666643
No 158
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.53 E-value=2.8e-07 Score=83.60 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=62.9
Q ss_pred cchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 013515 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (441)
Q Consensus 226 Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~ 305 (441)
|.+-.+++...|....-.++||+|||.|..|..||.+. .+++++|+++.+++.+++++.. .++|++.+.|+....
T Consensus 28 ~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~ 102 (201)
T PF05401_consen 28 RRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFW 102 (201)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT--
T ss_pred HHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCC
Confidence 33333444444554556789999999999999998873 6899999999999999999874 478999999997765
Q ss_pred CCCCCCCCccEEEEcCCCCCCcc
Q 013515 306 PKDPAYSEVRAILLDPSCSGSGT 328 (441)
Q Consensus 306 ~~~~~~~~fD~Il~DpPCSg~G~ 328 (441)
+. +.||.|+ ||..+-
T Consensus 103 P~----~~FDLIV----~SEVlY 117 (201)
T PF05401_consen 103 PE----GRFDLIV----LSEVLY 117 (201)
T ss_dssp -S----S-EEEEE----EES-GG
T ss_pred CC----CCeeEEE----EehHhH
Confidence 43 7899999 555553
No 159
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.52 E-value=4.4e-07 Score=88.66 Aligned_cols=84 Identities=21% Similarity=0.318 Sum_probs=59.4
Q ss_pred hhHHHHHHhC--CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 229 ASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 229 ss~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
..++...+|. ..+|.+|||+|||+|-.++..+.+ +..+|+|+|+++..++.+++|++.+|+.. .+......+..
T Consensus 147 TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~~- 222 (295)
T PF06325_consen 147 TTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDLV- 222 (295)
T ss_dssp HHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCTC-
T ss_pred HHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecccc-
Confidence 4455555544 467999999999999988877665 45799999999999999999999999854 22222211111
Q ss_pred CCCCCCCccEEEEc
Q 013515 307 KDPAYSEVRAILLD 320 (441)
Q Consensus 307 ~~~~~~~fD~Il~D 320 (441)
..+||.|+.+
T Consensus 223 ----~~~~dlvvAN 232 (295)
T PF06325_consen 223 ----EGKFDLVVAN 232 (295)
T ss_dssp ----CS-EEEEEEE
T ss_pred ----cccCCEEEEC
Confidence 1689999864
No 160
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.52 E-value=2.1e-06 Score=84.91 Aligned_cols=123 Identities=11% Similarity=0.091 Sum_probs=87.7
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~ 308 (441)
...+...++..++.+|||+|||+|..+..+++.. +..+++++|. +.+++.++++++..|+ ++|+++.+|+.+.+.
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-- 213 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-- 213 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--
Confidence 4455566777888999999999999999999986 4579999997 7899999999999998 569999999976432
Q ss_pred CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCCh
Q 013515 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQV 387 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ 387 (441)
..+|.|++ + +++.. ++.+ .-.++|+++.+.++ ||+++-....+...
T Consensus 214 ---~~~D~v~~----~--~~lh~-----------------~~~~-------~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 260 (306)
T TIGR02716 214 ---PEADAVLF----C--RILYS-----------------ANEQ-------LSTIMCKKAFDAMRSGGRLLILDMVIDDP 260 (306)
T ss_pred ---CCCCEEEe----E--hhhhc-----------------CChH-------HHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence 23588875 1 12210 1111 11467889988777 67765554434333
Q ss_pred hc
Q 013515 388 EN 389 (441)
Q Consensus 388 EN 389 (441)
++
T Consensus 261 ~~ 262 (306)
T TIGR02716 261 EN 262 (306)
T ss_pred CC
Confidence 33
No 161
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.51 E-value=1.4e-06 Score=82.42 Aligned_cols=116 Identities=15% Similarity=0.092 Sum_probs=84.4
Q ss_pred HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 231 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
.++...+.+.++.+|||+|||+|..+..+++. ...++++|+++.+++.+++++...+. ++.+...|+..+....
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~-- 111 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEH-- 111 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhc--
Confidence 45555555678999999999999999888875 25799999999999999999888776 5778888887665322
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
.++||+|++.-..... ++ . ..+|..+.++++ +|.++.+++.-
T Consensus 112 ~~~fD~Ii~~~~l~~~------~~----------------~----------~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 112 PGQFDVVTCMEMLEHV------PD----------------P----------ASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred CCCccEEEEhhHhhcc------CC----------------H----------HHHHHHHHHHcCCCcEEEEEecCC
Confidence 2689999874322111 00 1 256777777776 78888877653
No 162
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.51 E-value=1.1e-06 Score=81.18 Aligned_cols=122 Identities=14% Similarity=0.185 Sum_probs=97.2
Q ss_pred cccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCC
Q 013515 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFL 302 (441)
Q Consensus 224 ~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~ 302 (441)
.+-+.-.+++..++..-...++||+|.-+|..++.+|..++..|+|+++|+++...+...+..+..|+ ..|+++++++.
T Consensus 56 ~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~ 135 (237)
T KOG1663|consen 56 LVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL 135 (237)
T ss_pred ecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh
Confidence 34455677777777777788999999999999999999999999999999999999999999999998 56999999887
Q ss_pred CCCCC---CCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 303 NLDPK---DPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 303 ~~~~~---~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
+...+ +...+.||.+++|+= + + .......+++++++ ||.|+
T Consensus 136 esLd~l~~~~~~~tfDfaFvDad---------K-------------------~-------nY~~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 136 ESLDELLADGESGTFDFAFVDAD---------K-------------------D-------NYSNYYERLLRLLRVGGVIV 180 (237)
T ss_pred hhHHHHHhcCCCCceeEEEEccc---------h-------------------H-------HHHHHHHHHHhhcccccEEE
Confidence 54321 123478999999976 0 0 11266788889888 67777
Q ss_pred EE
Q 013515 379 YS 380 (441)
Q Consensus 379 Ys 380 (441)
+=
T Consensus 181 ~D 182 (237)
T KOG1663|consen 181 VD 182 (237)
T ss_pred Ee
Confidence 74
No 163
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.50 E-value=2.8e-07 Score=86.68 Aligned_cols=115 Identities=18% Similarity=0.106 Sum_probs=88.3
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
..+||+|||.|.+.+++|..- +....+|+|+....+..+.+.+.+.|++|+.+++.|+..+.......++.|.|.+.=|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 589999999999999999985 5578999999999999999999999999999999999887754433358899999777
Q ss_pred CCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 323 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 323 CSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
+- |++ ++-.+---.|...|+...+.|+ ||.|-..|=
T Consensus 129 DP------------WpK------------kRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 129 DP------------WPK------------KRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CC------------CCC------------ccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 31 221 1111112256777887777777 677776653
No 164
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.50 E-value=6.4e-07 Score=83.29 Aligned_cols=72 Identities=21% Similarity=0.261 Sum_probs=58.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
...++.+|||+|||+|..+..++...+ ...++|+|+++.+++.+++++ .++.+.++|+.+ +..+ ++||+|
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~~---~sfD~V 109 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFKD---NFFDLV 109 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCCC---CCEEEE
Confidence 345688999999999999999988754 479999999999999998764 346678888877 3332 689999
Q ss_pred EE
Q 013515 318 LL 319 (441)
Q Consensus 318 l~ 319 (441)
++
T Consensus 110 ~~ 111 (204)
T TIGR03587 110 LT 111 (204)
T ss_pred EE
Confidence 84
No 165
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.49 E-value=1e-06 Score=92.40 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=68.5
Q ss_pred ccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 013515 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (441)
Q Consensus 225 ~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~ 304 (441)
+|......+...+.+.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++... ..+++.++++|+...
T Consensus 21 ~~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~ 95 (475)
T PLN02336 21 LDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING--HYKNVKFMCADVTSP 95 (475)
T ss_pred cCchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEeccccc
Confidence 444445566667777788899999999999999999862 689999999999987654221 236899999999643
Q ss_pred CCCCCCCCCccEEEEcCCC
Q 013515 305 DPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpPC 323 (441)
....+ .++||.|++..++
T Consensus 96 ~~~~~-~~~fD~I~~~~~l 113 (475)
T PLN02336 96 DLNIS-DGSVDLIFSNWLL 113 (475)
T ss_pred ccCCC-CCCEEEEehhhhH
Confidence 22111 2679999987653
No 166
>PRK03612 spermidine synthase; Provisional
Probab=98.48 E-value=6.2e-07 Score=94.89 Aligned_cols=135 Identities=11% Similarity=0.057 Sum_probs=88.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHH--HHHh---CC--CcEEEEeccCCCCCCCCCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT--IKLS---GA--ANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~--~~~~---g~--~~v~~~~~D~~~~~~~~~~~~ 312 (441)
.++.+|||+|+|.|..+..+++. ++..+|+++|+|+++++.++++ +... .. ++++++.+|+.++....+ +
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~--~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA--E 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC--C
Confidence 45679999999999999888764 3236999999999999999984 3322 12 579999999987653322 6
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHH
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENED 391 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~ 391 (441)
+||.|++|+|... .|+. .. -...++++.+.+.++ +|.++..+++-. ...+
T Consensus 373 ~fDvIi~D~~~~~------~~~~----------------~~-----L~t~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~ 423 (521)
T PRK03612 373 KFDVIIVDLPDPS------NPAL----------------GK-----LYSVEFYRLLKRRLAPDGLLVVQSTSPY--FAPK 423 (521)
T ss_pred CCCEEEEeCCCCC------Ccch----------------hc-----cchHHHHHHHHHhcCCCeEEEEecCCcc--cchH
Confidence 8999999988421 0100 00 011456677777777 687776665433 3344
Q ss_pred HHHHHhchhcCCCeE
Q 013515 392 VIKSVLPIAMSFGFQ 406 (441)
Q Consensus 392 vV~~~l~~~~~~~~~ 406 (441)
.+..+.+..++.+|.
T Consensus 424 ~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 424 AFWSIEATLEAAGLA 438 (521)
T ss_pred HHHHHHHHHHHcCCE
Confidence 444444433444563
No 167
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.47 E-value=1.3e-06 Score=82.06 Aligned_cols=107 Identities=17% Similarity=0.111 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
..+.+|||+|||+|..+..++.. ...++++|+++.+++.+++++...+..++.+..+|+.+.+...+ .+||.|++
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~D~i~~ 118 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGA--KSFDVVTC 118 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCC--CCccEEEe
Confidence 34789999999999999888774 24699999999999999999998887678888999887664432 57999986
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
.-. +..- .-...+|..+.+.++ +|.++.++|.
T Consensus 119 ~~~------l~~~--------------------------~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 119 MEV------LEHV--------------------------PDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hhH------HHhC--------------------------CCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 321 1000 011356777777776 7888877764
No 168
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.45 E-value=8.8e-07 Score=87.51 Aligned_cols=87 Identities=14% Similarity=0.102 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh-CCC-cEEEEe-ccCCCCCCCC-CCCCCccE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAA-NIEVLH-GDFLNLDPKD-PAYSEVRA 316 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~-g~~-~v~~~~-~D~~~~~~~~-~~~~~fD~ 316 (441)
.+.+|||+|||+|.....++.... ..+++|+|+++..++.+++|++.+ ++. .|.+.. .|...+.... ...+.||.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 568999999999999998887654 478999999999999999999999 774 577754 3433332211 01267999
Q ss_pred EEEcCCCCCCcc
Q 013515 317 ILLDPSCSGSGT 328 (441)
Q Consensus 317 Il~DpPCSg~G~ 328 (441)
|+++||.-.++.
T Consensus 193 ivcNPPf~~s~~ 204 (321)
T PRK11727 193 TLCNPPFHASAA 204 (321)
T ss_pred EEeCCCCcCcch
Confidence 999999876543
No 169
>PRK01581 speE spermidine synthase; Validated
Probab=98.45 E-value=1.1e-06 Score=87.60 Aligned_cols=125 Identities=11% Similarity=0.039 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHH--HH---Hh--CCCcEEEEeccCCCCCCCCCCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT--IK---LS--GAANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~--~~---~~--g~~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
...+||++|+|.|+.+..+.+. .+..+|+++|+++.+++.+++. +. +. .-++++++.+|+..+..... ++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~--~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS--SL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC--CC
Confidence 3469999999999977766654 3447999999999999999962 21 11 22579999999988654432 67
Q ss_pred ccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHH
Q 013515 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDV 392 (441)
Q Consensus 314 fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~v 392 (441)
||+|++|+|-..... . -.....+.++.+.+.|+ +|.+|..+. .|.....+
T Consensus 227 YDVIIvDl~DP~~~~----------------------~-----~~LyT~EFy~~~~~~LkPgGV~V~Qs~--sp~~~~~~ 277 (374)
T PRK01581 227 YDVIIIDFPDPATEL----------------------L-----STLYTSELFARIATFLTEDGAFVCQSN--SPADAPLV 277 (374)
T ss_pred ccEEEEcCCCccccc----------------------h-----hhhhHHHHHHHHHHhcCCCcEEEEecC--ChhhhHHH
Confidence 999999987211000 0 00112466777777777 677666533 34455555
Q ss_pred HHHHh
Q 013515 393 IKSVL 397 (441)
Q Consensus 393 V~~~l 397 (441)
+..+.
T Consensus 278 ~~~i~ 282 (374)
T PRK01581 278 YWSIG 282 (374)
T ss_pred HHHHH
Confidence 44444
No 170
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.44 E-value=3.8e-06 Score=82.91 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNL 304 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~ 304 (441)
.++.+|||+|||+|.+|..+++.+....+++++|+|++|++.+++++..... -+|..+++|+.+.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 3578999999999999999998864347899999999999999999876431 2477789998764
No 171
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.44 E-value=1e-07 Score=77.61 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=48.3
Q ss_pred EEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 246 LDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 246 LDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
||+|||+|..+..+.+.. +..+++++|+|+.+++.+++++...+..+......+..+...... .++||.|++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~V~~ 72 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDP-PESFDLVVA 72 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC-----SEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhccc-ccccceehh
Confidence 799999999999999886 558999999999999999999999876666666655555443321 158999985
No 172
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.42 E-value=1.3e-06 Score=84.77 Aligned_cols=123 Identities=13% Similarity=0.082 Sum_probs=83.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
.+.+||++|+|.|+.+..++... +..+++++|+++..++.+++++...+ -.+++++.+|+..+..... ++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~--~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTE--NTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCC--CCccE
Confidence 34599999999999888887653 34689999999999999999886643 2468888889876543322 68999
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHH
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKS 395 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~ 395 (441)
|++|++-. .|.. .. -...+.++.+.+.|+ +|.++..+|+.. -+...+..
T Consensus 149 Ii~D~~~~-~~~~----------------------~~-----l~~~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~ 198 (270)
T TIGR00417 149 IIVDSTDP-VGPA----------------------ET-----LFTKEFYELLKKALNEDGIFVAQSESPW--IQLELITD 198 (270)
T ss_pred EEEeCCCC-CCcc----------------------cc-----hhHHHHHHHHHHHhCCCcEEEEcCCCcc--cCHHHHHH
Confidence 99998732 1110 00 011355666767676 788888766533 33444444
Q ss_pred H
Q 013515 396 V 396 (441)
Q Consensus 396 ~ 396 (441)
+
T Consensus 199 ~ 199 (270)
T TIGR00417 199 L 199 (270)
T ss_pred H
Confidence 3
No 173
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.42 E-value=1.3e-06 Score=84.08 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=70.6
Q ss_pred hhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 013515 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 228 ~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 307 (441)
.-...++..+++.++++|||+|||+|..|..+++.. ..|+++|+++.+++.+++++.. .++++++++|+..++..
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh
Confidence 344556667778889999999999999999999874 4699999999999999988754 36899999999887643
Q ss_pred CCCCCCcc---EEEEcCCC
Q 013515 308 DPAYSEVR---AILLDPSC 323 (441)
Q Consensus 308 ~~~~~~fD---~Il~DpPC 323 (441)
.+| .|+.++|.
T Consensus 91 -----~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 -----DFPKQLKVVSNLPY 104 (253)
T ss_pred -----HcCCcceEEEcCCh
Confidence 345 99999995
No 174
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.40 E-value=2.8e-07 Score=85.05 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=88.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~Dp 321 (441)
...+||+|||.|.+.+.+|... +...++|+|+...++..+...+.+.|++|+.++++|+..+.......+++|.|.+.=
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 3389999999999999999985 458999999999999999999999999999999999988432111126789998877
Q ss_pred CCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchh
Q 013515 322 SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIA 400 (441)
Q Consensus 322 PCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~ 400 (441)
|+- |++.. -.+---.|..+|....+.|+ ||.|-..| -++.....+++..
T Consensus 97 PDP------------WpK~r------------H~krRl~~~~fl~~~~~~L~~gG~l~~~T------D~~~y~~~~~~~~ 146 (195)
T PF02390_consen 97 PDP------------WPKKR------------HHKRRLVNPEFLELLARVLKPGGELYFAT------DVEEYAEWMLEQF 146 (195)
T ss_dssp -----------------SGG------------GGGGSTTSHHHHHHHHHHEEEEEEEEEEE------S-HHHHHHHHHHH
T ss_pred CCC------------Ccccc------------hhhhhcCCchHHHHHHHHcCCCCEEEEEe------CCHHHHHHHHHHH
Confidence 732 11100 00000134566666666666 66665544 3455555555432
Q ss_pred c--CCCeEEec
Q 013515 401 M--SFGFQLAT 409 (441)
Q Consensus 401 ~--~~~~~~~~ 409 (441)
. +..|+...
T Consensus 147 ~~~~~~f~~~~ 157 (195)
T PF02390_consen 147 EESHPGFENIE 157 (195)
T ss_dssp HHHSTTEEEE-
T ss_pred HhcCcCeEEcc
Confidence 2 35787653
No 175
>PRK06202 hypothetical protein; Provisional
Probab=98.40 E-value=1.2e-06 Score=83.04 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=58.1
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhc---CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~---~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 312 (441)
.+...++.+|||+|||+|..+..++.... ...+|+++|+++.+++.++++....+ +.+...|+..++..+ +
T Consensus 55 ~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~l~~~~---~ 128 (232)
T PRK06202 55 ALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---VTFRQAVSDELVAEG---E 128 (232)
T ss_pred hcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---CeEEEEecccccccC---C
Confidence 34445678999999999999999887643 23599999999999999988765443 445555555554322 6
Q ss_pred CccEEEE
Q 013515 313 EVRAILL 319 (441)
Q Consensus 313 ~fD~Il~ 319 (441)
+||+|++
T Consensus 129 ~fD~V~~ 135 (232)
T PRK06202 129 RFDVVTS 135 (232)
T ss_pred CccEEEE
Confidence 8999986
No 176
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.39 E-value=1.3e-06 Score=82.25 Aligned_cols=104 Identities=21% Similarity=0.278 Sum_probs=72.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC--C----cEEEEeccCCCCCCCCCCC
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--A----NIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~--~----~v~~~~~D~~~~~~~~~~~ 311 (441)
.+..|.+|||+|||.|-.+.+||++ +..|+|+|+++.+++.+++....... . .+++.+.|+....
T Consensus 86 k~~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------ 156 (282)
T KOG1270|consen 86 KPLLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------ 156 (282)
T ss_pred cccCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------
Confidence 3445788999999999999999998 37999999999999999998433222 1 2445555555433
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
+.||.|+ || +-+...... .+++...+++++ +|.|+-||-
T Consensus 157 ~~fDaVv----cs---------------------------evleHV~dp-~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 157 GKFDAVV----CS---------------------------EVLEHVKDP-QEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred cccceee----eH---------------------------HHHHHHhCH-HHHHHHHHHHhCCCCceEeeeh
Confidence 4599998 43 112222222 366777777776 688887764
No 177
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=3.1e-06 Score=80.71 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=77.3
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~ 309 (441)
..-++..+++.+++.||++|+|.|..|..|++.. .+|+|+|+|+..+..+++.+. ...|++++++|+...+....
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhh
Confidence 5667788889999999999999999999999873 689999999999999999876 34689999999999886531
Q ss_pred CCCCccEEEEcCCCCCCc
Q 013515 310 AYSEVRAILLDPSCSGSG 327 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G 327 (441)
..++.|+.+-|++-+.
T Consensus 94 --~~~~~vVaNlPY~Iss 109 (259)
T COG0030 94 --AQPYKVVANLPYNISS 109 (259)
T ss_pred --cCCCEEEEcCCCcccH
Confidence 1579999999987543
No 178
>PRK05785 hypothetical protein; Provisional
Probab=98.36 E-value=1.3e-06 Score=82.56 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
++.+|||+|||+|..+..+++.. .++|+++|++++|++.+++.. ..+++|+..++..+ ++||.|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp~~d---~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALPFRD---KSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCCCCC---CCEEEEEe
Confidence 47899999999999999998875 369999999999999987631 24678998887654 78999986
No 179
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.35 E-value=2.1e-06 Score=84.96 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
+|.+|||+|||+|..+..+++. ..+|+++|+++.+++.++++++..+ ..++.+...|...+. ++||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~------~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLS------GKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcC------CCcC
Confidence 5789999999999999999875 3589999999999999999988753 246778888875542 5799
Q ss_pred EEEE
Q 013515 316 AILL 319 (441)
Q Consensus 316 ~Il~ 319 (441)
.|++
T Consensus 215 ~Vv~ 218 (315)
T PLN02585 215 TVTC 218 (315)
T ss_pred EEEE
Confidence 9974
No 180
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.35 E-value=3.9e-06 Score=78.56 Aligned_cols=75 Identities=25% Similarity=0.319 Sum_probs=56.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEeccCCCCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL------------SGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~------------~g~~~v~~~~~D~~~~~~~ 307 (441)
.+|.+|||+|||.|.-+..||+. .-.|+|+|+|+.+++.+...... ..-.+|+++++|+.++...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 57889999999999999999975 36899999999999976332110 0113588999999987753
Q ss_pred CCCCCCccEEEE
Q 013515 308 DPAYSEVRAILL 319 (441)
Q Consensus 308 ~~~~~~fD~Il~ 319 (441)
. .+.||.|+-
T Consensus 110 ~--~~~fD~i~D 119 (213)
T TIGR03840 110 D--LGPVDAVYD 119 (213)
T ss_pred c--CCCcCEEEe
Confidence 2 156888853
No 181
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.34 E-value=4.5e-07 Score=83.60 Aligned_cols=147 Identities=17% Similarity=0.183 Sum_probs=93.8
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCCCCCCCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~--~~v~~~~~D~~~~~~~~~~~ 311 (441)
+....++.|++|||.|.|-|+.++..++. ++.+|+.+|.++.-++.+.-|==..++ .+|+++.+|+.++-.... .
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~-D 203 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD-D 203 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC-c
Confidence 34566788999999999999999887775 456999999999999877544211122 258999999987765432 2
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEE-EEEcCCCCChhc
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERV-VYSTCSIHQVEN 389 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~l-vYsTCS~~~~EN 389 (441)
++||+|+-|||..+... .-.-.++-+.-++.|+ ||.| =|+.-.-..--.
T Consensus 204 ~sfDaIiHDPPRfS~Ag-----------------------------eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG 254 (287)
T COG2521 204 ESFDAIIHDPPRFSLAG-----------------------------ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRG 254 (287)
T ss_pred cccceEeeCCCccchhh-----------------------------hHhHHHHHHHHHHHcCcCCcEEEEeCCCCccccc
Confidence 68999999999643321 0011233444455555 6654 465443333333
Q ss_pred HHHHHHHhchhcCCCeEEecCCC
Q 013515 390 EDVIKSVLPIAMSFGFQLATPFP 412 (441)
Q Consensus 390 e~vV~~~l~~~~~~~~~~~~~~~ 412 (441)
-++-..+.+...+-+|+++....
T Consensus 255 ~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 255 LDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred CChhHHHHHHHHhcCceeeeeeh
Confidence 33433444444567888665443
No 182
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.31 E-value=3.6e-06 Score=79.28 Aligned_cols=71 Identities=23% Similarity=0.337 Sum_probs=59.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.++.+|||+|||+|..+..++.. ...|+++|+++.+++.+++++...+. +++.+..+|+.. .. +.||.|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~---~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LL---GRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---cc---CCcCEEE
Confidence 56889999999999999998875 25699999999999999999988877 578899998432 12 6799998
Q ss_pred E
Q 013515 319 L 319 (441)
Q Consensus 319 ~ 319 (441)
+
T Consensus 133 ~ 133 (230)
T PRK07580 133 C 133 (230)
T ss_pred E
Confidence 5
No 183
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.30 E-value=1.2e-05 Score=88.11 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=78.9
Q ss_pred CChhhhcCcccccchh---hHHHHH---HhCC-CCCCEEEEEcCCCchHHHHHHHHhc----------------------
Q 013515 214 VHPLIVNGCVFLQGKA---SSMVAA---ALAP-KPGWKVLDACSAPGNKTVHLAALMK---------------------- 264 (441)
Q Consensus 214 ~~~~~~~g~~~~Qd~s---s~l~~~---~l~~-~~g~~VLDl~ag~G~kt~~la~~~~---------------------- 264 (441)
..++++-||=..+..+ ..+++. +.+. ++++.++|-+||+|++.+..|.+..
T Consensus 156 g~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~ 235 (702)
T PRK11783 156 GESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEA 235 (702)
T ss_pred CCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHH
Confidence 3455666654333322 123332 3333 5689999999999999888776421
Q ss_pred -------------------CCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 265 -------------------GKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 265 -------------------~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
...+|+|+|+++.+++.+++|++.+|+. .|.+.++|+.++..... .+.||.|+.|||.
T Consensus 236 ~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~-~~~~d~IvtNPPY 313 (702)
T PRK11783 236 LWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP-KGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc-cCCCCEEEECCCC
Confidence 1136999999999999999999999995 48999999998764431 1469999999996
No 184
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.29 E-value=2.8e-06 Score=78.64 Aligned_cols=135 Identities=24% Similarity=0.222 Sum_probs=99.8
Q ss_pred hHHHHHHhC------CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 230 SSMVAAALA------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 230 s~l~~~~l~------~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
|-|++.++. ++||.+||=+||++|..-.|+++.+++.+-|||+|.+...=..+...+++. +||..+..|++.
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArh 216 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARH 216 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCC
Confidence 666666654 689999999999999999999999999999999999987766666655543 588899999987
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH-HHHHhCCCC-Cc-EEEE-
Q 013515 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA-LRHALSFPG-VE-RVVY- 379 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l-L~~a~~~~~-~G-~lvY- 379 (441)
...---...-+|+|+.|.+ .||. ..| .-+|-.||+ +| +++|
T Consensus 217 P~KYRmlVgmVDvIFaDva---------qpdq--------------------------~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADVA---------QPDQ--------------------------ARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred chheeeeeeeEEEEeccCC---------Cchh--------------------------hhhhhhhhhhhhccCCeEEEEE
Confidence 5532111246899999999 4442 222 334555777 55 4444
Q ss_pred -EcCCCCChhcHHHHHHHhchhc
Q 013515 380 -STCSIHQVENEDVIKSVLPIAM 401 (441)
Q Consensus 380 -sTCS~~~~ENe~vV~~~l~~~~ 401 (441)
+.|+-....+|.|.+.-.+...
T Consensus 262 kancidstv~ae~vFa~Ev~klq 284 (317)
T KOG1596|consen 262 KANCIDSTVFAEAVFAAEVKKLQ 284 (317)
T ss_pred ecccccccccHHHHHHHHHHHHH
Confidence 5798889999999877665433
No 185
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.28 E-value=1.2e-06 Score=79.93 Aligned_cols=85 Identities=15% Similarity=0.228 Sum_probs=67.4
Q ss_pred chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 227 d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
..+.-++++ ..+.+-.+|.|+|||||..|-.++++.+ ...|+++|-|+.|++.++..+ .++++..+|..++.+
T Consensus 17 RPa~dLla~-Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p 89 (257)
T COG4106 17 RPARDLLAR-VPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKP 89 (257)
T ss_pred CcHHHHHhh-CCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCC
Confidence 334444443 3345678999999999999999999975 489999999999999986543 578899999999887
Q ss_pred CCCCCCCccEEEEcCC
Q 013515 307 KDPAYSEVRAILLDPS 322 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpP 322 (441)
. ..+|.|+.++-
T Consensus 90 ~----~~~dllfaNAv 101 (257)
T COG4106 90 E----QPTDLLFANAV 101 (257)
T ss_pred C----Cccchhhhhhh
Confidence 6 56788987765
No 186
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.28 E-value=1e-06 Score=78.52 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.+.+.|+|+|+|-.+...|.. +.+|+|++.+|.+...+.+|+.-.|..|++++.+|+.++.. +..|+|++
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-----e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-----ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-----cccceeHH
Confidence 378999999999999888776 46999999999999999999998999999999999998874 45688874
No 187
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.27 E-value=4.2e-06 Score=81.35 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCC--cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~--~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
..+.+|||+|||+|..+..++..+... ..|+++|+++.+++.++++. .++.+.++|+.+++..+ ++||.|
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~---~sfD~I 155 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFAD---QSLDAI 155 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcC---CceeEE
Confidence 456789999999999999998876432 37999999999999987642 46788999998887554 689999
Q ss_pred EE
Q 013515 318 LL 319 (441)
Q Consensus 318 l~ 319 (441)
+.
T Consensus 156 ~~ 157 (272)
T PRK11088 156 IR 157 (272)
T ss_pred EE
Confidence 84
No 188
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=4.3e-06 Score=74.37 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=69.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
....++++|||+|..++.+++..++....+|.|+++.+++...+.++.+++ ++.++..|....... +++|+++.+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~----~~VDvLvfN 117 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRN----ESVDVLVFN 117 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhcc----CCccEEEEC
Confidence 367899999999999999999988888899999999999999999999887 477888888765533 789999999
Q ss_pred CCCC
Q 013515 321 PSCS 324 (441)
Q Consensus 321 pPCS 324 (441)
||.-
T Consensus 118 PPYV 121 (209)
T KOG3191|consen 118 PPYV 121 (209)
T ss_pred CCcC
Confidence 9973
No 189
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.26 E-value=5.9e-06 Score=79.95 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=72.3
Q ss_pred CCCCEEEEEcCCCch----HHHHHHHHhcC----CcEEEEEeCCHHHHHHHHHHHH----HhC-----------------
Q 013515 240 KPGWKVLDACSAPGN----KTVHLAALMKG----KGKIVACELNKERVRRLKDTIK----LSG----------------- 290 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~----kt~~la~~~~~----~~~V~a~D~~~~rl~~l~~~~~----~~g----------------- 290 (441)
.++.+|||+|||+|. .+..+++.... ..+|+|+|+|+.+++.+++.+- ..+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 346799999999996 45555554432 4689999999999999987531 001
Q ss_pred -----C-CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 013515 291 -----A-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA 364 (441)
Q Consensus 291 -----~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l 364 (441)
+ .+|.+.++|..+.++.. ++||.|+ |.. ++-. .+ ...|.++
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~---~~fD~I~----crn--vl~y-----------------f~-------~~~~~~~ 224 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPL---GDFDLIF----CRN--VLIY-----------------FD-------EPTQRKL 224 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCcc---CCCCEEE----ech--hHHh-----------------CC-------HHHHHHH
Confidence 1 36888999998866532 6899998 432 2110 00 1234677
Q ss_pred HHHHhCCCC-CcEEEEE
Q 013515 365 LRHALSFPG-VERVVYS 380 (441)
Q Consensus 365 L~~a~~~~~-~G~lvYs 380 (441)
+....+.++ ||.|+-.
T Consensus 225 l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 225 LNRFAEALKPGGYLFLG 241 (264)
T ss_pred HHHHHHHhCCCeEEEEE
Confidence 888888777 6777654
No 190
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.25 E-value=3.9e-07 Score=83.24 Aligned_cols=87 Identities=20% Similarity=0.336 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCC-CCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDP-AYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~-~~~~fD~Il 318 (441)
..+.|+|..||.||-|++.+... ..|+++|+|+-++..+++|++-+|+ +.|++++||+.++..... ....+|.|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 46789999999999999998763 5899999999999999999999999 579999999987663321 013478999
Q ss_pred EcCCCCCCcccc
Q 013515 319 LDPSCSGSGTAA 330 (441)
Q Consensus 319 ~DpPCSg~G~~~ 330 (441)
+-||=+|.|-.+
T Consensus 171 ~sppwggp~y~~ 182 (263)
T KOG2730|consen 171 LSPPWGGPSYLR 182 (263)
T ss_pred cCCCCCCcchhh
Confidence 999999988764
No 191
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.23 E-value=8.3e-07 Score=80.78 Aligned_cols=74 Identities=28% Similarity=0.390 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC------CC-CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK------DP-AYSE 313 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~------~~-~~~~ 313 (441)
.+.+|||+||||||+|..+.+..+..++|+|+|+.+. ....++..+.+|+.+.... .. ....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence 4589999999999999999988655689999999875 2235677777777543210 00 1158
Q ss_pred ccEEEEcC--CCCC
Q 013515 314 VRAILLDP--SCSG 325 (441)
Q Consensus 314 fD~Il~Dp--PCSg 325 (441)
||.|++|. +|+|
T Consensus 92 ~dlv~~D~~~~~~g 105 (181)
T PF01728_consen 92 FDLVLSDMAPNVSG 105 (181)
T ss_dssp ESEEEE-------S
T ss_pred cceeccccccCCCC
Confidence 99999999 4444
No 192
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.22 E-value=5.5e-06 Score=77.58 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=84.5
Q ss_pred hhhhcCcccccchhhHHHHHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 013515 216 PLIVNGCVFLQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294 (441)
Q Consensus 216 ~~~~~g~~~~Qd~ss~l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v 294 (441)
..|.+++......-+......-. --.|.+||-+ |-+..+...+.+.+...+|+.+|++++.++-.++.+++.|++ |
T Consensus 18 ~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~l--GDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i 94 (243)
T PF01861_consen 18 VELDQGYATPETTLRRAALMAERGDLEGKRILFL--GDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-I 94 (243)
T ss_dssp GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEE--S-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---E
T ss_pred cccccccccHHHHHHHHHHHHhcCcccCCEEEEE--cCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-e
Confidence 45666666665433222211111 1247889854 566666665556666689999999999999999999999997 9
Q ss_pred EEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC
Q 013515 295 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV 374 (441)
Q Consensus 295 ~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~ 374 (441)
+..+.|+++..+..- .++||+++.|||.+-.|+ .-.|..+.+.|++
T Consensus 95 ~~~~~DlR~~LP~~~-~~~fD~f~TDPPyT~~G~---------------------------------~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 95 EAVHYDLRDPLPEEL-RGKFDVFFTDPPYTPEGL---------------------------------KLFLSRGIEALKG 140 (243)
T ss_dssp EEE---TTS---TTT-SS-BSEEEE---SSHHHH---------------------------------HHHHHHHHHTB-S
T ss_pred EEEEecccccCCHHH-hcCCCEEEeCCCCCHHHH---------------------------------HHHHHHHHHHhCC
Confidence 999999998665431 378999999999876664 2457778887773
Q ss_pred -cEEEEEcCCCCCh--hcHHHHHHHhchhcCCCeEEecCCCCC
Q 013515 375 -ERVVYSTCSIHQV--ENEDVIKSVLPIAMSFGFQLATPFPNG 414 (441)
Q Consensus 375 -G~lvYsTCS~~~~--ENe~vV~~~l~~~~~~~~~~~~~~~~~ 414 (441)
|..+|-..|..+. +-=..|++++. +.+|.+...+|++
T Consensus 141 ~g~~gy~~~~~~~~s~~~~~~~Q~~l~---~~gl~i~dii~~F 180 (243)
T PF01861_consen 141 EGCAGYFGFTHKEASPDKWLEVQRFLL---EMGLVITDIIPDF 180 (243)
T ss_dssp TT-EEEEEE-TTT--HHHHHHHHHHHH---TS--EEEEEEEEE
T ss_pred CCceEEEEEecCcCcHHHHHHHHHHHH---HCCcCHHHHHhhh
Confidence 5455666665431 11235777763 4566665554443
No 193
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.21 E-value=1.8e-05 Score=76.62 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=77.0
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~f 314 (441)
.+.+-.|.+|||+|||.|+.+..|+.. +...|+|+|.+..-+-..+-.-+-.|.+. +..+..-+.+++. . +.|
T Consensus 110 ~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~---~~F 183 (315)
T PF08003_consen 110 HLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L---GAF 183 (315)
T ss_pred hhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c---CCc
Confidence 344456999999999999999999876 45789999999877665544444445433 3333234455554 2 689
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC-CCcEEEEEcCCCCChhc
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP-GVERVVYSTCSIHQVEN 389 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~-~~G~lvYsTCS~~~~EN 389 (441)
|.|++ +||+.++.+. ...|......+ +||.||.-|--+.-+++
T Consensus 184 DtVF~------MGVLYHrr~P--------------------------l~~L~~Lk~~L~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 184 DTVFS------MGVLYHRRSP--------------------------LDHLKQLKDSLRPGGELVLETLVIDGDEN 227 (315)
T ss_pred CEEEE------eeehhccCCH--------------------------HHHHHHHHHhhCCCCEEEEEEeeecCCCc
Confidence 99994 8998764321 23344444434 58999988776665554
No 194
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.21 E-value=1e-05 Score=74.12 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=89.7
Q ss_pred cccccchhhHHHHHHhCCCC--CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 013515 222 CVFLQGKASSMVAAALAPKP--GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299 (441)
Q Consensus 222 ~~~~Qd~ss~l~~~~l~~~~--g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~ 299 (441)
...+|-+-+.-+.++|+..+ ..-|||+|||+|-.+..+.+- .-..+++|+|+.||+.+.+. .+.- .++.+
T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~--e~eg---dlil~ 100 (270)
T KOG1541|consen 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER--ELEG---DLILC 100 (270)
T ss_pred eeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh--hhhc---Ceeee
Confidence 35778777777778887665 678999999999888776553 35679999999999999862 2211 25566
Q ss_pred cCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 300 DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 300 D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
|.-...+..+ +.||.+|. -|..-.+.+ -|... | ....++.. ....-+..++ ++.-|
T Consensus 101 DMG~Glpfrp--GtFDg~IS---ISAvQWLcn-A~~s~--~--------~P~~Rl~~-------FF~tLy~~l~rg~raV 157 (270)
T KOG1541|consen 101 DMGEGLPFRP--GTFDGVIS---ISAVQWLCN-ADKSL--H--------VPKKRLLR-------FFGTLYSCLKRGARAV 157 (270)
T ss_pred ecCCCCCCCC--CccceEEE---eeeeeeecc-cCccc--c--------ChHHHHHH-------HhhhhhhhhccCceeE
Confidence 6554333322 78998874 222211111 01000 0 01122211 1122233333 66666
Q ss_pred EEcCCCCChhcHHHHHHHhchhcCCCe
Q 013515 379 YSTCSIHQVENEDVIKSVLPIAMSFGF 405 (441)
Q Consensus 379 YsTCS~~~~ENe~vV~~~l~~~~~~~~ 405 (441)
+- +-.||+++++.+++.+...+|
T Consensus 158 ~Q----fYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 158 LQ----FYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred EE----ecccchHHHHHHHHHHHhhcc
Confidence 53 678999999999976655554
No 195
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7.1e-06 Score=74.69 Aligned_cols=86 Identities=21% Similarity=0.184 Sum_probs=72.0
Q ss_pred HHHhC--CCCCCEEEEEcCCCchHHHHHHHHhcCCcEE-EEEeCCHHHHHHHHHHHHHhC----------CCcEEEEecc
Q 013515 234 AAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKI-VACELNKERVRRLKDTIKLSG----------AANIEVLHGD 300 (441)
Q Consensus 234 ~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V-~a~D~~~~rl~~l~~~~~~~g----------~~~v~~~~~D 300 (441)
..+|+ .+||-..||+|+|+|..|..++.+++..|.+ +++|..++.++..++|++..- ...+.++.+|
T Consensus 73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD 152 (237)
T KOG1661|consen 73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD 152 (237)
T ss_pred HHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC
Confidence 34566 7899999999999999999999988877665 999999999999999998643 1357888999
Q ss_pred CCCCCCCCCCCCCccEEEEcCC
Q 013515 301 FLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 301 ~~~~~~~~~~~~~fD~Il~DpP 322 (441)
.+...++. .+||+|.+-+-
T Consensus 153 gr~g~~e~---a~YDaIhvGAa 171 (237)
T KOG1661|consen 153 GRKGYAEQ---APYDAIHVGAA 171 (237)
T ss_pred ccccCCcc---CCcceEEEccC
Confidence 99887664 78999998654
No 196
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=2e-05 Score=70.52 Aligned_cols=154 Identities=19% Similarity=0.258 Sum_probs=98.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCC------CCCCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLD------PKDPAYS 312 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~-D~~~~~------~~~~~~~ 312 (441)
.|+++|||+||+||..+...-+..++.|.|.++|+-. + ..+..+.++.+ |+.+.. ...+ ..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~--~p~~Ga~~i~~~dvtdp~~~~ki~e~lp-~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------I--EPPEGATIIQGNDVTDPETYRKIFEALP-NR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------c--cCCCCcccccccccCCHHHHHHHHHhCC-CC
Confidence 5799999999999999999999998899999999852 1 11233445555 666532 1112 25
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHH
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENED 391 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~ 391 (441)
.+|+||.|.---.+|+- ..|-..+..+-...|.-|+.++. +|.+| |-+..-+.+.
T Consensus 136 ~VdvVlSDMapnaTGvr---------------------~~Dh~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e~~ 191 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVR---------------------IRDHYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSEEA 191 (232)
T ss_pred cccEEEeccCCCCcCcc---------------------hhhHHHHHHHHHHHHHHhhhhcCCCcEEE---EEEecCCchH
Confidence 78999999887777752 23344666777788888888766 57665 6666666665
Q ss_pred HHHHHhchhcCCCeEEec-CCCCCCCccccccccceeeeeccc
Q 013515 392 VIKSVLPIAMSFGFQLAT-PFPNGTAEASQFLKALSIYFEPIQ 433 (441)
Q Consensus 392 vV~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~p~~ 433 (441)
-.++-|.. .|+-+. ..|.-.+..+.-..-++..|-+.+
T Consensus 192 ~l~r~l~~----~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~~~ 230 (232)
T KOG4589|consen 192 LLQRRLQA----VFTNVKKVKPDASRDESAETYLVCLNFKGNV 230 (232)
T ss_pred HHHHHHHH----HhhhcEeeCCccccccccceeeeeeeccCcC
Confidence 55555532 233222 235444444444333445555543
No 197
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.18 E-value=7e-07 Score=87.22 Aligned_cols=94 Identities=27% Similarity=0.401 Sum_probs=67.8
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DP 309 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~---~~ 309 (441)
+...|.++++..++|+.-|.||+|..+.+..++ ++|+|+|.|+.+++.++++++..+ +++.++++++.++... ..
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHHHcc
Confidence 456778999999999999999999999998877 999999999999999998887653 5799999999887632 11
Q ss_pred CCCCccEEEEcCCCCCCcc
Q 013515 310 AYSEVRAILLDPSCSGSGT 328 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~ 328 (441)
...++|.||+|-.+|..-.
T Consensus 90 ~~~~~dgiL~DLGvSS~Ql 108 (310)
T PF01795_consen 90 GINKVDGILFDLGVSSMQL 108 (310)
T ss_dssp TTS-EEEEEEE-S--HHHH
T ss_pred CCCccCEEEEccccCHHHh
Confidence 2368999999999987543
No 198
>PLN02366 spermidine synthase
Probab=98.17 E-value=2e-05 Score=77.73 Aligned_cols=82 Identities=21% Similarity=0.182 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC--C--CcEEEEeccCCCCCCCCCCCCCcc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--A--ANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g--~--~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
....+||++|+|.|+.+..+++. .+..+|+.+|+++..++.+++.+...+ . ++++++.+|+..+....+ .++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-EGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-CCCCC
Confidence 34679999999999999888876 344689999999999999999987642 2 479999999876543221 15799
Q ss_pred EEEEcCCC
Q 013515 316 AILLDPSC 323 (441)
Q Consensus 316 ~Il~DpPC 323 (441)
+|++|.+-
T Consensus 168 vIi~D~~d 175 (308)
T PLN02366 168 AIIVDSSD 175 (308)
T ss_pred EEEEcCCC
Confidence 99999863
No 199
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.15 E-value=4.1e-05 Score=71.92 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=57.2
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC---------------CcEEEEeccCC
Q 013515 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---------------ANIEVLHGDFL 302 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~---------------~~v~~~~~D~~ 302 (441)
.+.++.+|||+|||.|.-+.+||+. .-.|+|+|+++.+++.+.. +.|+ .+|++.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence 3456889999999999999999985 3689999999999998642 2222 46888999999
Q ss_pred CCCCCCCCCCCccEEE
Q 013515 303 NLDPKDPAYSEVRAIL 318 (441)
Q Consensus 303 ~~~~~~~~~~~fD~Il 318 (441)
++.... ...||.|+
T Consensus 108 ~l~~~~--~~~fd~v~ 121 (218)
T PRK13255 108 ALTAAD--LADVDAVY 121 (218)
T ss_pred CCCccc--CCCeeEEE
Confidence 886543 25788886
No 200
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.15 E-value=5.1e-06 Score=80.65 Aligned_cols=185 Identities=20% Similarity=0.213 Sum_probs=115.3
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHH-------HHHHHHHHhCCC--cEEEEec
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR-------RLKDTIKLSGAA--NIEVLHG 299 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~-------~l~~~~~~~g~~--~v~~~~~ 299 (441)
=|.+.+....++||+.|+|=+.|+|+.-...|.. ++.|++.||+-.++. -.+.|++++|.. -+.++.+
T Consensus 196 LSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~ 272 (421)
T KOG2671|consen 196 LSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTA 272 (421)
T ss_pred HHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeee
Confidence 4677777888899999999999999987766665 379999999988776 467899999963 2567889
Q ss_pred cCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCC--CCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcE
Q 013515 300 DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHA--SGHTADPTEMERLNKLSAFQKKALRHALSFPG-VER 376 (441)
Q Consensus 300 D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~--~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~ 376 (441)
|+.+.+-... ..||.|++|||.. .-...++...+-.... +....+-........+..+-..+|.-+.+.+. ||+
T Consensus 273 D~sn~~~rsn--~~fDaIvcDPPYG-VRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggr 349 (421)
T KOG2671|consen 273 DFSNPPLRSN--LKFDAIVCDPPYG-VREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGR 349 (421)
T ss_pred cccCcchhhc--ceeeEEEeCCCcc-hhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCce
Confidence 9988775442 6899999999972 1111111110000000 00000000112233556666778888888766 899
Q ss_pred EEEEcCCCCChhcHHHHHHHhchhcCCCeEE----ecCCCCCCCccccccccc
Q 013515 377 VVYSTCSIHQVENEDVIKSVLPIAMSFGFQL----ATPFPNGTAEASQFLKAL 425 (441)
Q Consensus 377 lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 425 (441)
+|+= .|.-+|+.....+. .++.+++ +..+..|.++.-+..++.
T Consensus 350 lv~w----~p~~~e~~~~~~~P--~h~~lsl~~ns~q~~~~~srrllt~~k~~ 396 (421)
T KOG2671|consen 350 LVFW----LPTITEEYGEDDIP--SHPYLSLIYNSEQPFTHWSRRLLTYQKLP 396 (421)
T ss_pred EEEe----cCchhhccCcccCC--CCcchhhhhhhccccchhhhhheeeeecc
Confidence 9853 33444444444342 2444444 334557877776655443
No 201
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.15 E-value=2.4e-05 Score=83.11 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-------CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-------KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--KDPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-------~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~--~~~~~~ 312 (441)
+.+|||.|||+|++...++..+.. ...++++|+++..+..++.++..++.-.+.+.+.|+..... .....+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 458999999999999999887632 25789999999999999999988763234556666543221 111125
Q ss_pred CccEEEEcCCCCCCc
Q 013515 313 EVRAILLDPSCSGSG 327 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G 327 (441)
.||+|+.+||....-
T Consensus 112 ~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 112 LFDIVITNPPYGRLK 126 (524)
T ss_pred cccEEEeCCCccccC
Confidence 799999999986543
No 202
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.14 E-value=8.5e-06 Score=71.85 Aligned_cols=108 Identities=18% Similarity=0.175 Sum_probs=71.4
Q ss_pred hhhHHHHHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 013515 228 KASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 228 ~ss~l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~ 306 (441)
.-+.++..++. ..++.+|||+|||.|..+..++.. + .+++++|+++.+++. .++.....+......
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~-~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~ 74 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR--G-FEVTGVDISPQMIEK----------RNVVFDNFDAQDPPF 74 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT--T-SEEEEEESSHHHHHH----------TTSEEEEEECHTHHC
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh--C-CEEEEEECCHHHHhh----------hhhhhhhhhhhhhhc
Confidence 34455565664 577899999999999999988665 2 499999999999987 223333333333222
Q ss_pred CCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCC
Q 013515 307 KDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCS 383 (441)
Q Consensus 307 ~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS 383 (441)
.. ++||.|++- +++-.-+| -..+|....++++ +|.++.++-.
T Consensus 75 ~~---~~fD~i~~~------~~l~~~~d--------------------------~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 75 PD---GSFDLIICN------DVLEHLPD--------------------------PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp HS---SSEEEEEEE------SSGGGSSH--------------------------HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred cc---cchhhHhhH------HHHhhccc--------------------------HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 22 689999962 22221111 1477888888887 6777766544
No 203
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=1e-05 Score=77.76 Aligned_cols=94 Identities=23% Similarity=0.380 Sum_probs=80.9
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC--C
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP--A 310 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~--~ 310 (441)
++..|.++|+...+|..-|-||+|-.+...+++.++++|+|.|+.+++.+++.+..++ +++.++++.|.++..... .
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcC
Confidence 4567889999999999999999999999998888999999999999999999999887 689999999887764321 1
Q ss_pred CCCccEEEEcCCCCCCc
Q 013515 311 YSEVRAILLDPSCSGSG 327 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G 327 (441)
.+++|.||+|-.-|+.-
T Consensus 94 i~~vDGiL~DLGVSS~Q 110 (314)
T COG0275 94 IGKVDGILLDLGVSSPQ 110 (314)
T ss_pred CCceeEEEEeccCCccc
Confidence 36899999998877653
No 204
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.98 E-value=5.9e-06 Score=83.65 Aligned_cols=104 Identities=29% Similarity=0.309 Sum_probs=77.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~--v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+-+|||.-||+|--++-++.-+.+..+|+++|+++++++.+++|++.+|+.. +++.+.|+..+-... ...||+|=+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~--~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR--QERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS--TT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc--cccCCEEEe
Confidence 4589999999999999999887666899999999999999999999999965 889999998765321 268999999
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 383 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS 383 (441)
||= |+- ...|+.|++.++-|.+++.|||
T Consensus 128 DPf--GSp----------------------------------~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 128 DPF--GSP----------------------------------APFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp --S--S------------------------------------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCC--CCc----------------------------------cHhHHHHHHHhhcCCEEEEecc
Confidence 986 221 2568889887776788899988
No 205
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.98 E-value=0.00034 Score=73.57 Aligned_cols=109 Identities=23% Similarity=0.356 Sum_probs=88.9
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcC---CcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEE
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAA-NIEV 296 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~---~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~ 296 (441)
|.|+--..-+.+++.++.|++..+|+|-|||+|+.-+..+..+.. ...+++.|+++..+..++-|+--.|+. ++..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 666665678899999999999999999999999999998888853 367999999999999999999999986 4667
Q ss_pred EeccCCCCCCCCC--CCCCccEEEEcCCCCCCccc
Q 013515 297 LHGDFLNLDPKDP--AYSEVRAILLDPSCSGSGTA 329 (441)
Q Consensus 297 ~~~D~~~~~~~~~--~~~~fD~Il~DpPCSg~G~~ 329 (441)
.++|...-+.... ....||.|+.+||-|+.|..
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~ 280 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWG 280 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccc
Confidence 7777665553311 12679999999999977654
No 206
>PLN02823 spermine synthase
Probab=97.96 E-value=8.7e-05 Score=74.04 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g----~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
..+||.+|+|.|+.+..+.+.. +..+|+++|+++..++.+++.+...+ -++++++.+|+..+..... ++||+|
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~--~~yDvI 180 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRD--EKFDVI 180 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCC--CCccEE
Confidence 4689999999999888777652 34689999999999999999886432 2579999999998764432 689999
Q ss_pred EEcCC
Q 013515 318 LLDPS 322 (441)
Q Consensus 318 l~DpP 322 (441)
++|.+
T Consensus 181 i~D~~ 185 (336)
T PLN02823 181 IGDLA 185 (336)
T ss_pred EecCC
Confidence 99975
No 207
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.96 E-value=4e-05 Score=72.52 Aligned_cols=85 Identities=27% Similarity=0.358 Sum_probs=70.1
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~ 311 (441)
++.-.++++++.||++|-|||..|..|.+. +.+|+|+|+|+.++..+.++.+.... ...+++++|+...+.
T Consensus 50 I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~----- 121 (315)
T KOG0820|consen 50 IVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL----- 121 (315)
T ss_pred HHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-----
Confidence 334456789999999999999999998887 47999999999999999998875433 358899999988763
Q ss_pred CCccEEEEcCCCCC
Q 013515 312 SEVRAILLDPSCSG 325 (441)
Q Consensus 312 ~~fD~Il~DpPCSg 325 (441)
..||.++.+-|.--
T Consensus 122 P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 122 PRFDGCVSNLPYQI 135 (315)
T ss_pred cccceeeccCCccc
Confidence 34899999988743
No 208
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.93 E-value=2.2e-05 Score=71.21 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+.||.+|||+|||.|..-.+|.+. .....+++|++++.+....+ .|+ .++++|..+-....+ ..+||.|+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~----rGv---~Viq~Dld~gL~~f~-d~sFD~VI 80 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA----RGV---SVIQGDLDEGLADFP-DQSFDYVI 80 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH----cCC---CEEECCHHHhHhhCC-CCCccEEe
Confidence 467999999999999988888775 34789999999998776544 354 478898876543322 27899998
Q ss_pred E
Q 013515 319 L 319 (441)
Q Consensus 319 ~ 319 (441)
+
T Consensus 81 l 81 (193)
T PF07021_consen 81 L 81 (193)
T ss_pred h
Confidence 5
No 209
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.92 E-value=2.2e-05 Score=82.81 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=67.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
..+..+||+|||.|.+++++|... +...++|+|++...+..+...+.+.|++|+.+++.|+..+....+ ..++|.|.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~-~~sv~~i~i 423 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLP-NNSLDGIYI 423 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcC-cccccEEEE
Confidence 347799999999999999999985 457899999999999999999999999999999988764442221 156899988
Q ss_pred cCC
Q 013515 320 DPS 322 (441)
Q Consensus 320 DpP 322 (441)
.=|
T Consensus 424 ~FP 426 (506)
T PRK01544 424 LFP 426 (506)
T ss_pred ECC
Confidence 777
No 210
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.82 E-value=7.4e-05 Score=72.22 Aligned_cols=90 Identities=24% Similarity=0.353 Sum_probs=72.2
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~ 308 (441)
-...++..+++.+++.|||+|+|+|..|..|+... .+|+++|+++..++.+++.+. .-++++++++|+..+....
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHH
Confidence 35566678888899999999999999999998874 799999999999999998776 3468999999999887542
Q ss_pred CCCCCccEEEEcCCC
Q 013515 309 PAYSEVRAILLDPSC 323 (441)
Q Consensus 309 ~~~~~fD~Il~DpPC 323 (441)
........|+.+.|.
T Consensus 93 ~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY 107 (262)
T ss_dssp HCSSSEEEEEEEETG
T ss_pred hhcCCceEEEEEecc
Confidence 101245688888885
No 211
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.81 E-value=0.00017 Score=67.77 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=58.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHH------------HHhCCCcEEEEeccCCCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI------------KLSGAANIEVLHGDFLNLDP 306 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~------------~~~g~~~v~~~~~D~~~~~~ 306 (441)
+.+|.+||+.+||.|.-..+||+. +-.|+|+|+|+..++.+.+.. ....-.+|++.++|+.+++.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 346789999999999999999986 357999999999999875521 01112468999999999874
Q ss_pred CCCCCCCccEEEE
Q 013515 307 KDPAYSEVRAILL 319 (441)
Q Consensus 307 ~~~~~~~fD~Il~ 319 (441)
.....+.||.|+-
T Consensus 118 ~~~~~~~fD~VyD 130 (226)
T PRK13256 118 IANNLPVFDIWYD 130 (226)
T ss_pred cccccCCcCeeee
Confidence 2212357898753
No 212
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.81 E-value=3.6e-05 Score=74.98 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=61.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
+|+|++||.||.+.-+... +-..|+++|+++.+++..+.|... . ++++|+.++..... ...+|+|+.+|||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~~~~~~-~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPN-----K-LIEGDITKIDEKDF-IPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCC-----C-CccCccccCchhhc-CCCCCEEEeCCCC
Confidence 6899999999998877654 345789999999999999888642 1 56788888775431 2579999999999
Q ss_pred CCCccccc
Q 013515 324 SGSGTAAE 331 (441)
Q Consensus 324 Sg~G~~~~ 331 (441)
.+.....+
T Consensus 73 q~fS~ag~ 80 (275)
T cd00315 73 QPFSIAGK 80 (275)
T ss_pred hhhhHHhh
Confidence 98776543
No 213
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.79 E-value=8.4e-05 Score=68.38 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=53.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-CCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-LDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~-~~~~~~~~~~fD~Il 318 (441)
.++++|||+|||+|..+..++... ...++++|+++++++.++. . +++++.+|+.+ +++.. .++||.|+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~~~--~~sfD~Vi 80 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEAFP--DKSFDYVI 80 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccccC--CCCcCEEE
Confidence 468899999999999998887653 3578999999999988754 2 35677888865 22211 16799999
Q ss_pred EcCC
Q 013515 319 LDPS 322 (441)
Q Consensus 319 ~DpP 322 (441)
+..+
T Consensus 81 ~~~~ 84 (194)
T TIGR02081 81 LSQT 84 (194)
T ss_pred EhhH
Confidence 7543
No 214
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.76 E-value=3.2e-05 Score=72.90 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHH
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR 281 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~ 281 (441)
.+|..|||+|||||++|..+++. +..+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence 36889999999999999999986 45799999999987764
No 215
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.73 E-value=0.00015 Score=66.15 Aligned_cols=71 Identities=24% Similarity=0.259 Sum_probs=59.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+|+|+|+|.|.=++.+|-.. +..+++-+|...+++.-+++....+|++|++++++++.+ ... ..+||.|+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~---~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEY---RESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTT---TT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-ccc---CCCccEEEe
Confidence 89999999999999998775 568999999999999999999999999999999999988 211 268999985
No 216
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.72 E-value=0.00012 Score=70.10 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=65.2
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEeccCCCCCCCCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----ANIEVLHGDFLNLDPKDP 309 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~----~~v~~~~~D~~~~~~~~~ 309 (441)
+.++.+ ...+||=+|.|.|+.+..+.+. .+-.+|+++|+++..++.+++.+..... ++++++.+|+..+.....
T Consensus 70 ~~~~~~-~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~ 147 (246)
T PF01564_consen 70 PLLLHP-NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ 147 (246)
T ss_dssp HHHHSS-ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred HhhcCC-CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence 334443 5779999999999998888765 3346899999999999999998876432 479999999988765543
Q ss_pred CCC-CccEEEEcCCC
Q 013515 310 AYS-EVRAILLDPSC 323 (441)
Q Consensus 310 ~~~-~fD~Il~DpPC 323 (441)
+ +||+|++|.+-
T Consensus 148 --~~~yDvIi~D~~d 160 (246)
T PF01564_consen 148 --EEKYDVIIVDLTD 160 (246)
T ss_dssp --ST-EEEEEEESSS
T ss_pred --CCcccEEEEeCCC
Confidence 4 89999999984
No 217
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.69 E-value=0.00012 Score=72.25 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=55.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+.+|.+|||+||+|||.|-.+.+. +.+|+|+|..+ +...+. .-.+|+...+|...+.+. ...+|.|+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~--~~~~V~h~~~d~fr~~p~---~~~vDwvV 275 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLM--DTGQVEHLRADGFKFRPP---RKNVDWLV 275 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhh--CCCCEEEEeccCcccCCC---CCCCCEEE
Confidence 368999999999999999999886 35999999554 222222 235788888888776653 26899999
Q ss_pred EcCCCC
Q 013515 319 LDPSCS 324 (441)
Q Consensus 319 ~DpPCS 324 (441)
+|.-|.
T Consensus 276 cDmve~ 281 (357)
T PRK11760 276 CDMVEK 281 (357)
T ss_pred EecccC
Confidence 999873
No 218
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.69 E-value=0.00024 Score=62.67 Aligned_cols=88 Identities=16% Similarity=0.241 Sum_probs=68.9
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-- 307 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-- 307 (441)
+..++...++..|-.||++|.|+|-+|-.+.+.......++++|.+++....+.+.. +.+.++++|+.++...
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHh
Confidence 344455567888999999999999999999888766789999999999999887654 3456889999887622
Q ss_pred CCCCCCccEEEEcCC
Q 013515 308 DPAYSEVRAILLDPS 322 (441)
Q Consensus 308 ~~~~~~fD~Il~DpP 322 (441)
......||.|++-.|
T Consensus 112 e~~gq~~D~viS~lP 126 (194)
T COG3963 112 EHKGQFFDSVISGLP 126 (194)
T ss_pred hcCCCeeeeEEeccc
Confidence 112256899998777
No 219
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.67 E-value=0.00015 Score=70.30 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.|..|||+|||+|-.+...++. ++.+|+|+|.+ +|.+-++..++.+.+ ++|.++.|.++++... +++|+|+.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP----Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP----EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc----hhccEEEe
Confidence 4789999999999998877765 56899999987 688888888887766 6799999999887654 67899988
Q ss_pred cCC
Q 013515 320 DPS 322 (441)
Q Consensus 320 DpP 322 (441)
.|=
T Consensus 250 EPM 252 (517)
T KOG1500|consen 250 EPM 252 (517)
T ss_pred ccc
Confidence 774
No 220
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.66 E-value=0.00015 Score=62.86 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=52.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
.|||+|||.|..+..++... +..+|+++|.++..++.++++++.+++.++.+++....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999998874 446999999999999999999999998888888877654
No 221
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.65 E-value=0.00016 Score=75.03 Aligned_cols=77 Identities=23% Similarity=0.307 Sum_probs=58.9
Q ss_pred CCEEEEEcCCCchHHHHHHHH---hcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 242 GWKVLDACSAPGNKTVHLAAL---MKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~---~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
+..|+|+|||+|-.+...++. .+.+.+|+|+|.++.+...+++.++.+|. ++|+++++|.+++... +++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----ekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----EKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----S-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----CceeEE
Confidence 568999999999987655443 23457999999999999999988888888 6799999999998865 589999
Q ss_pred EEcCC
Q 013515 318 LLDPS 322 (441)
Q Consensus 318 l~DpP 322 (441)
+...=
T Consensus 263 VSElL 267 (448)
T PF05185_consen 263 VSELL 267 (448)
T ss_dssp EE---
T ss_pred EEecc
Confidence 97653
No 222
>PRK04148 hypothetical protein; Provisional
Probab=97.62 E-value=0.00034 Score=60.17 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=55.6
Q ss_pred HHHHhCCCCCCEEEEEcCCCch-HHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~-kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
+...+....+.+|+|+|+|+|. .+..|++. ...|+|+|+++.+++.++++ + +.++.+|..+..... +
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~~--y 75 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLEI--Y 75 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHHH--H
Confidence 3334444457899999999996 66667654 36999999999988877654 3 468889998766553 4
Q ss_pred CCccEEEE
Q 013515 312 SEVRAILL 319 (441)
Q Consensus 312 ~~fD~Il~ 319 (441)
..+|.|..
T Consensus 76 ~~a~liys 83 (134)
T PRK04148 76 KNAKLIYS 83 (134)
T ss_pred hcCCEEEE
Confidence 77899964
No 223
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.60 E-value=0.00027 Score=65.73 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+.+|+|+|+|.|-=++.+|-. .+..+|+-+|...+++.-++...+.+|++|++++++.++++..... . ||+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~--~-~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKK--Q-YDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccc--c-CcEEEe
Confidence 689999999999999999844 4567799999999999999999999999999999999998876532 1 899974
No 224
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.58 E-value=0.0015 Score=62.82 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=95.1
Q ss_pred CcccccchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEe
Q 013515 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANI-EVLH 298 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v-~~~~ 298 (441)
-...+|..-...+..+-.-...-+|||+|||+|.--+-+....+. ...|.-.|.++..++..++.++..|+.+| ++.+
T Consensus 115 Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~ 194 (311)
T PF12147_consen 115 RKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQ 194 (311)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEe
Confidence 334444333333333333334568999999999987777665443 36899999999999999999999999876 9999
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC-CCcEE
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP-GVERV 377 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~-~~G~l 377 (441)
+|+.+...-.......+.+++ +|.+---||. + +. ...|......+ +||+|
T Consensus 195 ~dAfd~~~l~~l~p~P~l~iV------sGL~ElF~Dn----------------~----lv---~~sl~gl~~al~pgG~l 245 (311)
T PF12147_consen 195 GDAFDRDSLAALDPAPTLAIV------SGLYELFPDN----------------D----LV---RRSLAGLARALEPGGYL 245 (311)
T ss_pred cCCCCHhHhhccCCCCCEEEE------ecchhhCCcH----------------H----HH---HHHHHHHHHHhCCCcEE
Confidence 998875422111124577775 4554332321 1 11 12233333334 58999
Q ss_pred EEEcCCCCChhcHHHHHHHhc
Q 013515 378 VYSTCSIHQVENEDVIKSVLP 398 (441)
Q Consensus 378 vYsTCS~~~~ENe~vV~~~l~ 398 (441)
||+.--.||.- +.|+.+|.
T Consensus 246 IyTgQPwHPQl--e~IAr~Lt 264 (311)
T PF12147_consen 246 IYTGQPWHPQL--EMIARVLT 264 (311)
T ss_pred EEcCCCCCcch--HHHHHHHh
Confidence 99887888853 67888884
No 225
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.55 E-value=0.0003 Score=65.34 Aligned_cols=91 Identities=24% Similarity=0.349 Sum_probs=57.1
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHH-------HhCC--CcEEEEeccCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK-------LSGA--ANIEVLHGDFLN 303 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~-------~~g~--~~v~~~~~D~~~ 303 (441)
+...+++.+++..+|+|||.|...++.|... +..+++++|+.+...+.++...+ .+|. ..+.+..+|+.+
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 3456788999999999999999988887664 55679999999998877665443 3454 468888999876
Q ss_pred CCCCCCCCCCccEEEEcCCCC
Q 013515 304 LDPKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 304 ~~~~~~~~~~fD~Il~DpPCS 324 (441)
.+.........|+|+++-=|.
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~~F 133 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNTCF 133 (205)
T ss_dssp HHHHHHHGHC-SEEEE--TTT
T ss_pred cHhHhhhhcCCCEEEEecccc
Confidence 542111123569999987764
No 226
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00027 Score=69.92 Aligned_cols=78 Identities=26% Similarity=0.295 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~Dp 321 (441)
..+|+|.-+|+|--++-++--.+. .+|+.+|+++++++.+++|++.+...+..+++.|+..+-.... ..||+|=+||
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~--~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELH--RAFDVIDIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcC--CCccEEecCC
Confidence 779999999999999998877654 3899999999999999999999955566777788877665542 6799999998
Q ss_pred C
Q 013515 322 S 322 (441)
Q Consensus 322 P 322 (441)
=
T Consensus 130 F 130 (380)
T COG1867 130 F 130 (380)
T ss_pred C
Confidence 6
No 227
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.48 E-value=0.00032 Score=65.82 Aligned_cols=85 Identities=26% Similarity=0.323 Sum_probs=62.0
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEeccCCCC
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL------------SGAANIEVLHGDFLNL 304 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~------------~g~~~v~~~~~D~~~~ 304 (441)
+...++.+||+.+||.|.-...||+. .-.|+|+|+++.+++.+.+.... ....+|+++++|+..+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 44677889999999999999999986 36999999999999988332211 1123689999999998
Q ss_pred CCCCCCCCCccEEEEcCCCCCCccc
Q 013515 305 DPKDPAYSEVRAILLDPSCSGSGTA 329 (441)
Q Consensus 305 ~~~~~~~~~fD~Il~DpPCSg~G~~ 329 (441)
..... ++||.|+= |..+-++
T Consensus 110 ~~~~~--g~fD~iyD---r~~l~Al 129 (218)
T PF05724_consen 110 PPEDV--GKFDLIYD---RTFLCAL 129 (218)
T ss_dssp GGSCH--HSEEEEEE---CSSTTTS
T ss_pred Chhhc--CCceEEEE---ecccccC
Confidence 86642 68999963 4444444
No 228
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.46 E-value=0.00041 Score=65.26 Aligned_cols=88 Identities=30% Similarity=0.389 Sum_probs=60.0
Q ss_pred hHHHHHHhCCCCCC--EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC----C-----CcEEEEe
Q 013515 230 SSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----A-----ANIEVLH 298 (441)
Q Consensus 230 s~l~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g----~-----~~v~~~~ 298 (441)
...++.++++++|. +|||+.+|-|.=++.+|.. + ++|+++|.|+-....++.-+++.. . .+|++++
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 45677778877774 9999999999999999875 3 589999999998888887776542 1 3699999
Q ss_pred ccCCCCCCCCCCCCCccEEEEcCC
Q 013515 299 GDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 299 ~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
+|..++.... ..+||+|.+||=
T Consensus 139 ~d~~~~L~~~--~~s~DVVY~DPM 160 (234)
T PF04445_consen 139 GDALEYLRQP--DNSFDVVYFDPM 160 (234)
T ss_dssp S-CCCHCCCH--SS--SEEEE--S
T ss_pred CCHHHHHhhc--CCCCCEEEECCC
Confidence 9999876521 278999999996
No 229
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.44 E-value=0.00045 Score=67.93 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
-.|..|||+|||+|-.++..|+. ++.+|+|+|-+.-. +.+++.+..+|+.+ |+++.+.+.++... .+++|+|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP---~eKVDiIv 132 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP---VEKVDIIV 132 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC---ccceeEEe
Confidence 35889999999999999887776 46899999988654 99999999999965 88899988877433 37889997
No 230
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.37 E-value=0.00085 Score=61.25 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=83.3
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE-EEeccCCCCCCCCCCCCCc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE-VLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~-~~~~D~~~~~~~~~~~~~f 314 (441)
++....-..||++|||||.---..-. .+...|+++|.++.|-+.+.+.++.....++. +++++.++++.-. ..++
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~--d~s~ 146 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLA--DGSY 146 (252)
T ss_pred HhcccCccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccc--cCCe
Confidence 34444445789999999975433321 24579999999999999999999887666777 9999999998332 1789
Q ss_pred cEEEEc-CCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHH
Q 013515 315 RAILLD-PSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDV 392 (441)
Q Consensus 315 D~Il~D-pPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~v 392 (441)
|.|+.- .=||-. -+.+.|++.-++|+ ||++++--+ -.+.-.-
T Consensus 147 DtVV~TlvLCSve---------------------------------~~~k~L~e~~rlLRpgG~iifiEH---va~~y~~ 190 (252)
T KOG4300|consen 147 DTVVCTLVLCSVE---------------------------------DPVKQLNEVRRLLRPGGRIIFIEH---VAGEYGF 190 (252)
T ss_pred eeEEEEEEEeccC---------------------------------CHHHHHHHHHHhcCCCcEEEEEec---ccccchH
Confidence 998743 124321 12567888888887 687777533 2333344
Q ss_pred HHHHhc
Q 013515 393 IKSVLP 398 (441)
Q Consensus 393 V~~~l~ 398 (441)
..++++
T Consensus 191 ~n~i~q 196 (252)
T KOG4300|consen 191 WNRILQ 196 (252)
T ss_pred HHHHHH
Confidence 455554
No 231
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.32 E-value=0.00042 Score=62.69 Aligned_cols=70 Identities=21% Similarity=0.354 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.|.+|||+|+|+|--++..+.. +...|++.|+++.....++.|.+.+|+ +|.++..|... .+ ..||.||+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~~-----~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-SP-----PAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-CC-----cceeEEEe
Confidence 4899999999999887766554 568999999999999999999999997 68888888765 21 56899986
No 232
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.31 E-value=2.4e-05 Score=64.55 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=27.4
Q ss_pred EEEcCCCchHHHHHHHHhcCCc--EEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 246 LDACSAPGNKTVHLAALMKGKG--KIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 246 LDl~ag~G~kt~~la~~~~~~~--~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
|++|++.|..|..+++.+.+.+ +++++|..+. .+..++.+++.++ .+++++.+|..+..+... ..++|.|++|.+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-DGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-H--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-CCCEEEEEECCC
Confidence 5789999999999998876654 8999999986 4555566665665 479999999876543321 258999999998
Q ss_pred CCC
Q 013515 323 CSG 325 (441)
Q Consensus 323 CSg 325 (441)
-+.
T Consensus 79 H~~ 81 (106)
T PF13578_consen 79 HSY 81 (106)
T ss_dssp --H
T ss_pred CCH
Confidence 543
No 233
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.31 E-value=0.0012 Score=62.58 Aligned_cols=63 Identities=27% Similarity=0.293 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
...++||+|||-|+.|..|+..+ .+|+|.|.|+.|..++++ .|++ ++ |..++...+ .+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~----kg~~---vl--~~~~w~~~~---~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK----KGFT---VL--DIDDWQQTD---FKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh----CCCe---EE--ehhhhhccC---CceEEEe
Confidence 45689999999999999999987 469999999998776644 4653 22 222233222 5799995
No 234
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00014 Score=74.24 Aligned_cols=108 Identities=28% Similarity=0.364 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCC-CCCCccEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDP-AYSEVRAI 317 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~-~v~~~~~D~~~~~~~~~-~~~~fD~I 317 (441)
.++-+|||.-+|+|--++..|..+++-+.|+|+|.++..++..++|++.+++. .++..+.|+..+-.... ....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 45778999999999999999999988899999999999999999999999874 46777788775543221 12579999
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS 383 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS 383 (441)
=+||= |+- ...|+.|.+.+..|.|++.|||
T Consensus 188 DLDPy--Gs~----------------------------------s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 188 DLDPY--GSP----------------------------------SPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ecCCC--CCc----------------------------------cHHHHHHHHHhhcCCEEEEEec
Confidence 99986 221 1458999988887778899998
No 235
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=97.22 E-value=0.00017 Score=65.93 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=71.6
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC----C
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK----D 308 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~----~ 308 (441)
+.+++.|.+|...+||.-|.||+|..+.+.. +..+++|.|.+|-+.+.++...+.+--..+..+.+.|..++.- .
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~~g 113 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIADTG 113 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHHHhC
Confidence 5678899999999999999999999998874 4579999999999999888877543223344455555544311 0
Q ss_pred CCCCCccEEEEcCCCCCCcc
Q 013515 309 PAYSEVRAILLDPSCSGSGT 328 (441)
Q Consensus 309 ~~~~~fD~Il~DpPCSg~G~ 328 (441)
-....||.||+|-.||+.-+
T Consensus 114 l~~~~vDGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 114 LLDVGVDGILMDLGCSSMQV 133 (303)
T ss_pred CCcCCcceEEeecCcccccc
Confidence 01257999999999998754
No 236
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.21 E-value=0.00083 Score=58.13 Aligned_cols=118 Identities=18% Similarity=0.239 Sum_probs=71.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCC
Q 013515 268 KIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTA 346 (441)
Q Consensus 268 ~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~ 346 (441)
+|+|+|+.+++++..+++++..|+ ++|++++.+...+....+. +++|.++.+ +|-+.. -|.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~-~~v~~~iFN-----LGYLPg-gDk----------- 62 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE-GPVDAAIFN-----LGYLPG-GDK----------- 62 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S---EEEEEEE-----ESB-CT-S-T-----------
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc-CCcCEEEEE-----CCcCCC-CCC-----------
Confidence 699999999999999999999988 5699999888887754331 478998765 554432 121
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCC--hhcHHHHHHHhchhcCCCeEEec
Q 013515 347 DPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQ--VENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 347 ~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~--~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
.+...+..-...|+.|+++++ ||.|+-..=.=|+ .|..+.|.++++......|.+..
T Consensus 63 ------~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~ 122 (140)
T PF06962_consen 63 ------SITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLK 122 (140)
T ss_dssp ------TSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEE
T ss_pred ------CCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEE
Confidence 112223344567888888887 6755544444465 34445566677655566787644
No 237
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.17 E-value=0.0031 Score=61.36 Aligned_cols=124 Identities=14% Similarity=0.138 Sum_probs=90.8
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLD 305 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g----~~~v~~~~~D~~~~~ 305 (441)
...++.+..+.| .+||=+|-|.|+.+-.+.+... -.+++.+|+++..++.+++.+.... -++++++..|+.++.
T Consensus 66 l~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v 143 (282)
T COG0421 66 LAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL 143 (282)
T ss_pred HHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH
Confidence 344445566666 6999999999999999888743 4799999999999999999998765 357899999999887
Q ss_pred CCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCC
Q 013515 306 PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSI 384 (441)
Q Consensus 306 ~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~ 384 (441)
...+ .+||+|++|---- .|-. +. -.+.+..+.+.+.|+ +|.+|.-+-|.
T Consensus 144 ~~~~--~~fDvIi~D~tdp-~gp~----~~-----------------------Lft~eFy~~~~~~L~~~Gi~v~q~~~~ 193 (282)
T COG0421 144 RDCE--EKFDVIIVDSTDP-VGPA----EA-----------------------LFTEEFYEGCRRALKEDGIFVAQAGSP 193 (282)
T ss_pred HhCC--CcCCEEEEcCCCC-CCcc----cc-----------------------cCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 6653 4799999996521 1210 00 012466777777777 78888775553
Q ss_pred C
Q 013515 385 H 385 (441)
Q Consensus 385 ~ 385 (441)
.
T Consensus 194 ~ 194 (282)
T COG0421 194 F 194 (282)
T ss_pred c
Confidence 3
No 238
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.10 E-value=0.00048 Score=68.21 Aligned_cols=77 Identities=29% Similarity=0.487 Sum_probs=58.2
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCC-CccEEEEcCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS-EVRAILLDPS 322 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~-~fD~Il~DpP 322 (441)
+|+|+|||.||.+.-+.+. +-..|.|+|+++.+.+..+.|.. ....+|+.++.... .. .+|+++.-||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~--l~~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSD--LPKDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHH--HHHT-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc-------cccccccccccccc--ccccceEEEeccC
Confidence 6999999999999888665 23478999999999999999875 57788998877442 13 5899999999
Q ss_pred CCCCccccc
Q 013515 323 CSGSGTAAE 331 (441)
Q Consensus 323 CSg~G~~~~ 331 (441)
|.+.....+
T Consensus 71 CQ~fS~ag~ 79 (335)
T PF00145_consen 71 CQGFSIAGK 79 (335)
T ss_dssp -TTTSTTST
T ss_pred CceEecccc
Confidence 999887754
No 239
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.09 E-value=0.0067 Score=59.93 Aligned_cols=81 Identities=11% Similarity=0.105 Sum_probs=63.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHH--HHhC---C--CcEEEEeccCCCCCCCCCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI--KLSG---A--ANIEVLHGDFLNLDPKDPAYS 312 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~--~~~g---~--~~v~~~~~D~~~~~~~~~~~~ 312 (441)
+.-++||=+|.|-|--.-.+.+. +.-++|+-+|++|++++.++++. +..+ . ++++++..|+.++..... +
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~--~ 364 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA--D 364 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc--c
Confidence 45679999999999777777665 34689999999999999999554 3322 1 469999999998876543 6
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.||.|++|-|-
T Consensus 365 ~fD~vIVDl~D 375 (508)
T COG4262 365 MFDVVIVDLPD 375 (508)
T ss_pred cccEEEEeCCC
Confidence 89999999993
No 240
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.06 E-value=0.0011 Score=60.04 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEeccCCCCC-CCCCCCCCcc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG---AANIEVLHGDFLNLD-PKDPAYSEVR 315 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g---~~~v~~~~~D~~~~~-~~~~~~~~fD 315 (441)
..|.+||++|||+|--++.++.+. +..+|++.|.++ .++.++.|++.++ -.++.+...|..+-. .......+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 468899999999999888888774 457999999999 9999999999887 246777766654311 1100125799
Q ss_pred EEEE
Q 013515 316 AILL 319 (441)
Q Consensus 316 ~Il~ 319 (441)
.||.
T Consensus 122 ~Ila 125 (173)
T PF10294_consen 122 VILA 125 (173)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9973
No 241
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.01 E-value=0.00062 Score=63.08 Aligned_cols=107 Identities=9% Similarity=0.106 Sum_probs=68.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
..+=.++||+|||+|-.+-.+-.+. .++.++|+|..|++.+.+. |+ + +..++|+..+.... ..++||.|
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~-~~er~DLi 192 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDL-TQERFDLI 192 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhc-cCCcccch
Confidence 3345799999999999998887764 5899999999999988664 22 2 23445554333211 12678888
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCCh
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQV 387 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ 387 (441)
..-==-+.+|. + ..++..+..+++ ||.+.||+-+...+
T Consensus 193 ~AaDVl~YlG~-------------------------------L-e~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 193 VAADVLPYLGA-------------------------------L-EGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred hhhhHHHhhcc-------------------------------h-hhHHHHHHHhcCCCceEEEEecccCCC
Confidence 53111111221 1 234555666666 89999998886555
No 242
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.99 E-value=0.011 Score=51.55 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHh---cCCcEEEEEeCCHHHHHHHHHHHHHhC--C-CcEEEEeccCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALM---KGKGKIVACELNKERVRRLKDTIKLSG--A-ANIEVLHGDFLN 303 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~---~~~~~V~a~D~~~~rl~~l~~~~~~~g--~-~~v~~~~~D~~~ 303 (441)
.+...|+|+|||-|+.+..++.++ ...-+|+++|.++..++.+....+..+ . .++.+..++...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 678899999999999999999854 234799999999999999999999887 3 445555554443
No 243
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.89 E-value=0.012 Score=56.00 Aligned_cols=114 Identities=20% Similarity=0.211 Sum_probs=75.6
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
.+....+..+..+|+|+|.|.|..+..+++.. +.-+++.+|. |..++.+++ .++|+++.+|+.+ ..+
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~---~~P-- 157 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD---PLP-- 157 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT---CCS--
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------ccccccccccHHh---hhc--
Confidence 33445566677899999999999999999885 4579999998 778887777 5789999999982 122
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-C--cEEEEEcCCCCChh
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-V--ERVVYSTCSIHQVE 388 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~--G~lvYsTCS~~~~E 388 (441)
. +|+|++ ..++.. |+.++. ..||+++...++ | |+|+-.-.-+....
T Consensus 158 ~-~D~~~l------~~vLh~-----------------~~d~~~-------~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 158 V-ADVYLL------RHVLHD-----------------WSDEDC-------VKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp S-ESEEEE------ESSGGG-----------------S-HHHH-------HHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred c-ccceee------ehhhhh-----------------cchHHH-------HHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 3 899987 122211 233333 578888888666 5 66655544443333
Q ss_pred c
Q 013515 389 N 389 (441)
Q Consensus 389 N 389 (441)
.
T Consensus 207 ~ 207 (241)
T PF00891_consen 207 T 207 (241)
T ss_dssp S
T ss_pred C
Confidence 3
No 244
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.88 E-value=0.004 Score=57.86 Aligned_cols=119 Identities=21% Similarity=0.263 Sum_probs=80.5
Q ss_pred EEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEEcCCC
Q 013515 245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 245 VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPC 323 (441)
|.|+||--|.....|.+. +...+++|+|+++.-++.+++++++.|+ +.|.+..+|........ +..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~---e~~d~ivI---- 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG---EDVDTIVI---- 72 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG---G---EEEE----
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC---CCCCEEEE----
Confidence 789999999999999886 3446899999999999999999999997 56999999987654331 33688876
Q ss_pred CCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchhcC
Q 013515 324 SGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIAMS 402 (441)
Q Consensus 324 Sg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~~ 402 (441)
.|.|- .+-.+||......++ ...+|-+ |--+...+.++|. .
T Consensus 73 AGMGG------------------------------~lI~~ILe~~~~~~~~~~~lILq-----P~~~~~~LR~~L~---~ 114 (205)
T PF04816_consen 73 AGMGG------------------------------ELIIEILEAGPEKLSSAKRLILQ-----PNTHAYELRRWLY---E 114 (205)
T ss_dssp EEE-H------------------------------HHHHHHHHHTGGGGTT--EEEEE-----ESS-HHHHHHHHH---H
T ss_pred ecCCH------------------------------HHHHHHHHhhHHHhccCCeEEEe-----CCCChHHHHHHHH---H
Confidence 24442 123578888766544 3566664 3348889999984 3
Q ss_pred CCeEEec
Q 013515 403 FGFQLAT 409 (441)
Q Consensus 403 ~~~~~~~ 409 (441)
.+|.+..
T Consensus 115 ~gf~I~~ 121 (205)
T PF04816_consen 115 NGFEIID 121 (205)
T ss_dssp TTEEEEE
T ss_pred CCCEEEE
Confidence 5676643
No 245
>PHA01634 hypothetical protein
Probab=96.86 E-value=0.006 Score=51.43 Aligned_cols=75 Identities=15% Similarity=0.282 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
.|.+|+|+||+.|..++.++-. ++.+|+|+|.++...+..+++++-+.+-.=-+..+ +++. .+++||...+|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~---eW~~---~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG---EWNG---EYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeeceeecc---cccc---cCCCcceEEEE
Confidence 4889999999999999988754 67899999999999999999998775411111122 2332 35889999998
Q ss_pred CCCCC
Q 013515 321 PSCSG 325 (441)
Q Consensus 321 pPCSg 325 (441)
|-|
T Consensus 100 --CeG 102 (156)
T PHA01634 100 --CEG 102 (156)
T ss_pred --ccc
Confidence 544
No 246
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.86 E-value=0.0074 Score=58.99 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=78.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh-CC-CcEEEEeccCC-CCCC-CCCCCCCccEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GA-ANIEVLHGDFL-NLDP-KDPAYSEVRAI 317 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~-g~-~~v~~~~~D~~-~~~~-~~~~~~~fD~I 317 (441)
.-++||+|+|.-..--.|+.... .=+.+|.|+++..++.|++|++++ ++ +.|+++...-. .+.. -....+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 45899999999887666665554 369999999999999999999999 77 46877654322 2211 11112579999
Q ss_pred EEcCCCCCCccccc-ccCccC------------CCCCCCCCCCcccHHHHHHH--HHHHHHHHHHHhCCCCCcEEEEEcC
Q 013515 318 LLDPSCSGSGTAAE-RLDHLL------------PSHASGHTADPTEMERLNKL--SAFQKKALRHALSFPGVERVVYSTC 382 (441)
Q Consensus 318 l~DpPCSg~G~~~~-~pd~~~------------~~~~~~~~~~~~~~~~~~~l--~~~Q~~lL~~a~~~~~~G~lvYsTC 382 (441)
+++||--.+.-=.. ....+. +...... ...+-+-+- ..+=.++++....+ +.....| ||
T Consensus 182 mCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G----~~~El~~~GGEv~FV~rMI~ES~~~-~~~v~Wf-Ts 255 (299)
T PF05971_consen 182 MCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTG----QSNELWCEGGEVAFVKRMIKESLQL-KDQVRWF-TS 255 (299)
T ss_dssp EE-----SS------------------------------------TTTTHHHHTHHHHHHHHHHHHHHH-GGGEEEE-EE
T ss_pred ecCCccccChhhhcccccccccccccccccccCccccCCC----CcceEEcCCccHHHHHHHHHHHHHh-CCCcEEE-ee
Confidence 99999766542100 000000 0000000 000000000 12334556665543 2356666 57
Q ss_pred CCCChhcHHHHHHHhchh
Q 013515 383 SIHQVENEDVIKSVLPIA 400 (441)
Q Consensus 383 S~~~~ENe~vV~~~l~~~ 400 (441)
-+...+|=.-+...|+..
T Consensus 256 mvgKkssL~~l~~~L~~~ 273 (299)
T PF05971_consen 256 MVGKKSSLKPLKKELKKL 273 (299)
T ss_dssp EESSGGGHHHHHHHHHHT
T ss_pred cccCcccHHHHHHHHHhc
Confidence 889999988888888653
No 247
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=96.79 E-value=0.0018 Score=67.56 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=68.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----CCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-----PAYSE 313 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-----~~~~~ 313 (441)
++++..|||+||+||+..-..++.|+..+-|+++|+-|-. .+.++..++.|+..-.-.. -.-.+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 4679999999999999999999999888999999987621 2344444455554211000 00134
Q ss_pred ccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEE
Q 013515 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVV 378 (441)
Q Consensus 314 fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lv 378 (441)
.|+||-|.--+-.|.+ ..+...-+.+-...|+-|..++. ||.+|
T Consensus 111 advVLhDgapnVg~~w---------------------~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 111 ADVVLHDGAPNVGGNW---------------------VQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred CcEEeecCCCccchhH---------------------HHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 6999999754433322 23334444455556666777765 78755
No 248
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.72 E-value=0.0019 Score=64.15 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=59.5
Q ss_pred EEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCCC
Q 013515 245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCS 324 (441)
Q Consensus 245 VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCS 324 (441)
|+|++||.||.+.-+.+. +-..+.|+|+++.+++..+.|.. + .+..+|+.++.... ...+|+++.-|||.
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~--~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD--IPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh--CCCcCEEEecCCCc
Confidence 689999999999887654 33456789999999999988853 2 34568888776433 24689999999999
Q ss_pred CCccccc
Q 013515 325 GSGTAAE 331 (441)
Q Consensus 325 g~G~~~~ 331 (441)
+.....+
T Consensus 71 ~fS~ag~ 77 (315)
T TIGR00675 71 PFSIAGK 77 (315)
T ss_pred ccchhcc
Confidence 9876544
No 249
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.62 E-value=0.0026 Score=59.54 Aligned_cols=84 Identities=11% Similarity=0.124 Sum_probs=51.1
Q ss_pred hHHHHHHhCCCCCC-EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC
Q 013515 230 SSMVAAALAPKPGW-KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK 307 (441)
Q Consensus 230 s~l~~~~l~~~~g~-~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~ 307 (441)
+-+.-.+....++. ..+|+|||+|--+..++... .+|+|+|+++.||+.+++.....-. ....+...+...+...
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~ 97 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG 97 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC
Confidence 33444455555665 89999999995555566663 5899999999999987664322111 1122222233333222
Q ss_pred CCCCCCccEEEE
Q 013515 308 DPAYSEVRAILL 319 (441)
Q Consensus 308 ~~~~~~fD~Il~ 319 (441)
.+++|.|++
T Consensus 98 ---e~SVDlI~~ 106 (261)
T KOG3010|consen 98 ---EESVDLITA 106 (261)
T ss_pred ---Ccceeeehh
Confidence 268899863
No 250
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.61 E-value=0.0073 Score=53.77 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=37.8
Q ss_pred EEEeCCHHHHHHHHHHHHHhC---CCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 270 VACELNKERVRRLKDTIKLSG---AANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 270 ~a~D~~~~rl~~l~~~~~~~g---~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+|+|+|+.|++.++++.+..+ ..+|+++++|+.+++..+ ++||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~~fD~v~~ 50 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD---CEFDAVTM 50 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC---CCeeEEEe
Confidence 479999999999987765322 357999999999987654 68999985
No 251
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.61 E-value=0.0031 Score=58.96 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=42.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~ 288 (441)
.+..+||+||-+|..|++||..++. ..|+++||++..++.|+++++.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence 3668999999999999999999865 6899999999999999999874
No 252
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.45 E-value=0.0061 Score=56.11 Aligned_cols=59 Identities=19% Similarity=0.371 Sum_probs=42.0
Q ss_pred hhHHHHHHhCC---CCCCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHH
Q 013515 229 ASSMVAAALAP---KPGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIK 287 (441)
Q Consensus 229 ss~l~~~~l~~---~~g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~ 287 (441)
+|-+....+.. ..+-.++|-|||.|+..+.++-+-++. ..|+|.|+++++++.+++|+.
T Consensus 36 AsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 36 ASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 44444444443 334589999999999999887764433 689999999999999998885
No 253
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.45 E-value=0.0056 Score=61.16 Aligned_cols=83 Identities=23% Similarity=0.341 Sum_probs=63.2
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
-+|+|+|||.||..+-+... +-.-+.|+|+++.+++..+.|... ..+...|...+....-....+|+|+--||
T Consensus 4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCCC
Confidence 47999999999999877654 235789999999999999988753 34666777766643211117899999999
Q ss_pred CCCCcccccc
Q 013515 323 CSGSGTAAER 332 (441)
Q Consensus 323 CSg~G~~~~~ 332 (441)
|-+..+..++
T Consensus 77 CQ~FS~aG~r 86 (328)
T COG0270 77 CQDFSIAGKR 86 (328)
T ss_pred CcchhhcCcc
Confidence 9998877554
No 254
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.40 E-value=0.012 Score=54.52 Aligned_cols=113 Identities=22% Similarity=0.295 Sum_probs=73.5
Q ss_pred CEEEEEcCCCchHHHHHHHHhcC----Cc----EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----C
Q 013515 243 WKVLDACSAPGNKTVHLAALMKG----KG----KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-----P 309 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~----~~----~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-----~ 309 (441)
.+|.|+||+||..+-.+++.+.. .+ +|+|+|+.+- ..+..|..+++|+....-.. -
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHHh
Confidence 58999999999999999988753 22 3999998852 23567888899998754210 0
Q ss_pred CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhC----CCC-CcEEEEEcCCC
Q 013515 310 AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALS----FPG-VERVVYSTCSI 384 (441)
Q Consensus 310 ~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~----~~~-~G~lvYsTCS~ 384 (441)
..++.|.|++|.----+|+ .++.+. .|.++|.+|+. .++ ||.+| --|
T Consensus 112 ggekAdlVvcDGAPDvTGl-----------------------Hd~DEy--~Q~qLllaAl~i~t~Vlk~Gg~FV---aKi 163 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGL-----------------------HDLDEY--VQAQLLLAALNIATCVLKPGGSFV---AKI 163 (294)
T ss_pred CCCCccEEEeCCCCCcccc-----------------------ccHHHH--HHHHHHHHHHHHHhheecCCCeee---hhh
Confidence 1257899999865433443 222333 46667777665 355 67665 355
Q ss_pred CChhcHHHHH
Q 013515 385 HQVENEDVIK 394 (441)
Q Consensus 385 ~~~ENe~vV~ 394 (441)
+..++...+.
T Consensus 164 fRg~~tslLy 173 (294)
T KOG1099|consen 164 FRGRDTSLLY 173 (294)
T ss_pred hccCchHHHH
Confidence 6666655544
No 255
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.40 E-value=0.011 Score=56.28 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
.|..|+=+| --..|...+.+.+-..+|..+|+++..+....+.++.+|++||+.+.-|.++..+.+- ..+||+++-|
T Consensus 152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~-~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL-KRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH-HhhCCeeecC
Confidence 366788777 4444544445555567999999999999999999999999999999999998776542 3689999999
Q ss_pred CCCCCC
Q 013515 321 PSCSGS 326 (441)
Q Consensus 321 pPCSg~ 326 (441)
||-+--
T Consensus 229 PpeTi~ 234 (354)
T COG1568 229 PPETIK 234 (354)
T ss_pred chhhHH
Confidence 996533
No 256
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.31 E-value=0.0021 Score=61.81 Aligned_cols=74 Identities=23% Similarity=0.328 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCchHHH-HHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~-~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.|+.|.||.||-|++|+ .+... ++..|+|+|.+|..++.++++++.+++ +...++.+|-+...+. ...|+|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~----~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR----LRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc----ccchhee
Confidence 47999999999999999 44332 568999999999999999999999886 3445667787766554 4568886
Q ss_pred Ec
Q 013515 319 LD 320 (441)
Q Consensus 319 ~D 320 (441)
+.
T Consensus 268 LG 269 (351)
T KOG1227|consen 268 LG 269 (351)
T ss_pred ec
Confidence 53
No 257
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.29 E-value=0.017 Score=52.71 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC-------CCcEEEEeccCCCCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-------AANIEVLHGDFLNLDPK 307 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g-------~~~v~~~~~D~~~~~~~ 307 (441)
..-.+.|+|||-||....++.+.+ ..-|++.||...-.+-.+++++.++ +.|+.++..++..+.+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn 132 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN 132 (249)
T ss_pred ccceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc
Confidence 345689999999999999999875 4799999999888888888888776 57888888887766654
No 258
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.18 E-value=0.018 Score=59.99 Aligned_cols=85 Identities=16% Similarity=0.231 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------------
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------------- 308 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------------- 308 (441)
.-+++|++||.||.+.-+-.. +--.|.++|+++.+.+..+.|... .....++.+|+.++....
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence 458999999999999888554 234678999999999998888521 122345566776665210
Q ss_pred -CCCCCccEEEEcCCCCCCcccc
Q 013515 309 -PAYSEVRAILLDPSCSGSGTAA 330 (441)
Q Consensus 309 -~~~~~fD~Il~DpPCSg~G~~~ 330 (441)
.....+|+++.-|||.+..+..
T Consensus 164 ~~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred hccCCCCCEEEEcCCCCccchhc
Confidence 0123689999999999887654
No 259
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.14 E-value=0.017 Score=57.30 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcC---CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE--EeccCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAANIEV--LHGDFLNL 304 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~---~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~--~~~D~~~~ 304 (441)
.++..++|+|||.|.||..+.+.+.. ...-+++|+|.+.|+.+.+++..-.++.+.+ +++|+.+.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 45779999999999999998887643 2568999999999999999998444455544 88888664
No 260
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.07 E-value=0.017 Score=57.77 Aligned_cols=123 Identities=16% Similarity=0.185 Sum_probs=72.6
Q ss_pred hHHHHHHhCC----CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC----------CcEE
Q 013515 230 SSMVAAALAP----KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----------ANIE 295 (441)
Q Consensus 230 s~l~~~~l~~----~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~----------~~v~ 295 (441)
|+|+..++.. .++.+|||+|||-||=..-+... +-..++++|++...++.++++.+.+.- -...
T Consensus 47 s~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~ 124 (331)
T PF03291_consen 47 SVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAE 124 (331)
T ss_dssp HHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEE
T ss_pred HHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhh
Confidence 4555555431 27899999999999977766553 458999999999999999999944221 1355
Q ss_pred EEeccCCCCC--CCC-CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 013515 296 VLHGDFLNLD--PKD-PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372 (441)
Q Consensus 296 ~~~~D~~~~~--~~~-~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~ 372 (441)
++.+|..... ... +....||+|=+= .++ | .. -.+.+.. +.+|.++.+.|
T Consensus 125 f~~~D~f~~~l~~~~~~~~~~FDvVScQ-----Fal---H-------Y~------Fese~~a-------r~~l~Nvs~~L 176 (331)
T PF03291_consen 125 FIAADCFSESLREKLPPRSRKFDVVSCQ-----FAL---H-------YA------FESEEKA-------RQFLKNVSSLL 176 (331)
T ss_dssp EEESTTCCSHHHCTSSSTTS-EEEEEEE-----S-G---G-------GG------GSSHHHH-------HHHHHHHHHTE
T ss_pred eeccccccchhhhhccccCCCcceeehH-----HHH---H-------Hh------cCCHHHH-------HHHHHHHHHhc
Confidence 6777775422 111 112478988421 111 1 00 0123332 56899999988
Q ss_pred C-CcEEEEEcC
Q 013515 373 G-VERVVYSTC 382 (441)
Q Consensus 373 ~-~G~lvYsTC 382 (441)
+ ||+++-+|-
T Consensus 177 k~GG~FIgT~~ 187 (331)
T PF03291_consen 177 KPGGYFIGTTP 187 (331)
T ss_dssp EEEEEEEEEEE
T ss_pred CCCCEEEEEec
Confidence 8 676666544
No 261
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.99 E-value=0.035 Score=54.21 Aligned_cols=132 Identities=15% Similarity=0.123 Sum_probs=82.6
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC--C----cEEEEeccCCC
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--A----NIEVLHGDFLN 303 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~--~----~v~~~~~D~~~ 303 (441)
|+|+-.+. ++++.|+|||||-||-.+-.-.. +-+.++++||.+--++.++.+.+.+.- + .+.++.+|...
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 67777666 57999999999999988776543 457899999999888888888775421 1 25677887654
Q ss_pred CCCCC---CCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEE
Q 013515 304 LDPKD---PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVY 379 (441)
Q Consensus 304 ~~~~~---~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvY 379 (441)
-...+ ....+||+|-+-=-| |- ...+.+ .-+.+|.++.+.|+ ||+++-
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~----------------HY-----aFetee-------~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAF----------------HY-----AFETEE-------SARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeE----------------ee-----eeccHH-------HHHHHHHHHHhhcCCCcEEEE
Confidence 32110 001237776321111 10 001222 22467888888887 677665
Q ss_pred EcCCCCChhcHHHHHHHhch
Q 013515 380 STCSIHQVENEDVIKSVLPI 399 (441)
Q Consensus 380 sTCS~~~~ENe~vV~~~l~~ 399 (441)
++ -|-++|-+=|+.
T Consensus 236 Ti------Pdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 236 TI------PDSDVIIKRLRA 249 (389)
T ss_pred ec------CcHHHHHHHHHh
Confidence 42 356777666654
No 262
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.98 E-value=0.023 Score=52.37 Aligned_cols=117 Identities=19% Similarity=0.155 Sum_probs=63.6
Q ss_pred HHHHhC-CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 233 VAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 233 ~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
++..+. ..++-.|-|+|||-+..+ +.+.+.-+|..+|+... |-.++..|...+|..+
T Consensus 63 iI~~l~~~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~--- 120 (219)
T PF05148_consen 63 IIEWLKKRPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLED--- 120 (219)
T ss_dssp HHHHHCTS-TTS-EEEES-TT-HHH----HH--S---EEEEESS-S---------------STTEEES-TTS-S--T---
T ss_pred HHHHHHhcCCCEEEEECCCchHHHH----HhcccCceEEEeeccCC---------------CCCEEEecCccCcCCC---
Confidence 333443 334579999999999765 44444468999998742 1135679999999776
Q ss_pred CCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-Cc-EEEEEcCCCCChhc
Q 013515 312 SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VE-RVVYSTCSIHQVEN 389 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G-~lvYsTCS~~~~EN 389 (441)
+++|+++.--. =+|+ + | ...|..|.+.|+ +| ..|+-.+|=+. |
T Consensus 121 ~svDv~VfcLS--LMGT------------------n-~------------~~fi~EA~RvLK~~G~L~IAEV~SRf~--~ 165 (219)
T PF05148_consen 121 ESVDVAVFCLS--LMGT------------------N-W------------PDFIREANRVLKPGGILKIAEVKSRFE--N 165 (219)
T ss_dssp T-EEEEEEES-----SS--------------------H------------HHHHHHHHHHEEEEEEEEEEEEGGG-S---
T ss_pred CceeEEEEEhh--hhCC------------------C-c------------HHHHHHHHheeccCcEEEEEEecccCc--C
Confidence 78999987322 1122 1 1 467899999888 56 45666777554 3
Q ss_pred HHHHHHHhchhcCCCeEEec
Q 013515 390 EDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 390 e~vV~~~l~~~~~~~~~~~~ 409 (441)
+..|++.....||++..
T Consensus 166 ---~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 166 ---VKQFIKALKKLGFKLKS 182 (219)
T ss_dssp ---HHHHHHHHHCTTEEEEE
T ss_pred ---HHHHHHHHHHCCCeEEe
Confidence 34455444567887754
No 263
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.98 E-value=0.016 Score=54.32 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=45.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
++|++|||.|.....+.+-..+ .-+|+|+|-++.+++.++++....- +++...+.|...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~ 133 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTS 133 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccc
Confidence 8999999999999988775432 3689999999999999998865432 445555555543
No 264
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.96 E-value=0.041 Score=50.77 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE-EEeccCCCCCCCCC-----CCCCc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE-VLHGDFLNLDPKDP-----AYSEV 314 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~-~~~~D~~~~~~~~~-----~~~~f 314 (441)
.+.+||+++||+|-++.++|+.++. -.-.-.|.++..+..++..+...|.+|+. .+..|+....-... ....|
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCc
Confidence 3446999999999999999999864 66778899999999999999998887753 45566665432211 12578
Q ss_pred cEEE
Q 013515 315 RAIL 318 (441)
Q Consensus 315 D~Il 318 (441)
|.|+
T Consensus 104 D~i~ 107 (204)
T PF06080_consen 104 DAIF 107 (204)
T ss_pred ceee
Confidence 9887
No 265
>PRK00536 speE spermidine synthase; Provisional
Probab=95.75 E-value=0.11 Score=49.96 Aligned_cols=72 Identities=10% Similarity=-0.074 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC--C--CcEEEEeccCCCCCCCCCCCCCccE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--A--ANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g--~--~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
...+||=+|.|-|+..-.+.+. + .+|+.+|+|+..++.+++.+.... . ++++++. . +.... .++||+
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~---~~~~~--~~~fDV 142 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-Q---LLDLD--IKKYDL 142 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-h---hhhcc--CCcCCE
Confidence 3579999999999999988876 3 499999999999999999666532 2 4566654 1 11111 157999
Q ss_pred EEEcC
Q 013515 317 ILLDP 321 (441)
Q Consensus 317 Il~Dp 321 (441)
|++|-
T Consensus 143 IIvDs 147 (262)
T PRK00536 143 IICLQ 147 (262)
T ss_pred EEEcC
Confidence 99993
No 266
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=95.66 E-value=0.052 Score=57.49 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=72.3
Q ss_pred cCcccccchhhHHHHHHhCCC--CCCEEEEEcCCCchHHHHHHHHhc---CCcEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 013515 220 NGCVFLQGKASSMVAAALAPK--PGWKVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAA-- 292 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~~--~g~~VLDl~ag~G~kt~~la~~~~---~~~~V~a~D~~~~rl~~l~~~~~~~g~~-- 292 (441)
.|.++.-..-+.+.+.++.+. |+..|.|+|||+|++-......+. ....+++.+....+...++.|+.-.|..
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence 455655556667777787765 678999999999998765544332 1246899999999999999998776652
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEEcCCCCC
Q 013515 293 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSG 325 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg 325 (441)
......+|...-+... ...+||.|+.+||-+.
T Consensus 274 t~~~~~~dtl~~~d~~-~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 274 NFNIINADTLTTKEWE-NENGFEVVVSNPPYSI 305 (501)
T ss_pred ccCcccCCcCCCcccc-ccccCCEEeecCCccc
Confidence 2333345543322111 1246999999999875
No 267
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.024 Score=53.23 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE-EEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE-VLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~-~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
-+|..|||+||.+||+|-.+.+. ++.+|+|+|+.-..+.- .++ .. ++|. .-..+++.+.+.+- .+..|.|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~---kLR-~d-~rV~~~E~tN~r~l~~~~~-~~~~d~~v 149 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHW---KLR-ND-PRVIVLERTNVRYLTPEDF-TEKPDLIV 149 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCH---hHh-cC-CcEEEEecCChhhCCHHHc-ccCCCeEE
Confidence 35899999999999999999886 56899999998543331 111 11 2333 34457776665442 24679999
Q ss_pred EcCCCCC
Q 013515 319 LDPSCSG 325 (441)
Q Consensus 319 ~DpPCSg 325 (441)
+|..--+
T Consensus 150 ~DvSFIS 156 (245)
T COG1189 150 IDVSFIS 156 (245)
T ss_pred EEeehhh
Confidence 9998543
No 268
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.55 E-value=0.059 Score=52.23 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=48.4
Q ss_pred CEEEEEcCCCchHHHHHH-HHhcCCcEEEEEeCCHHHHHHHHHHHH-HhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 243 WKVLDACSAPGNKTVHLA-ALMKGKGKIVACELNKERVRRLKDTIK-LSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la-~~~~~~~~V~a~D~~~~rl~~l~~~~~-~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.+|+=+||||=-.|..+. +.......|+++|+++.+.+.+++.++ ..|+ ..+.+.++|+.+.... ...||+|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d---l~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD---LKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc---cccCCEEEE
Confidence 499999999988877654 343344689999999999999999888 4555 5699999999876543 267999998
Q ss_pred cCC
Q 013515 320 DPS 322 (441)
Q Consensus 320 DpP 322 (441)
-+=
T Consensus 199 Aal 201 (276)
T PF03059_consen 199 AAL 201 (276)
T ss_dssp -TT
T ss_pred hhh
Confidence 544
No 269
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.44 E-value=0.0067 Score=61.06 Aligned_cols=64 Identities=30% Similarity=0.343 Sum_probs=56.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLD 305 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~--~~v~~~~~D~~~~~ 305 (441)
.++|+.|-|+|||.|-+++.++.. ..+|+|+|.++++++.++.|+..+-+ .+|++++.|+..+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 368999999999999999998876 37999999999999999999998777 35899999987766
No 270
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.30 E-value=0.12 Score=50.74 Aligned_cols=103 Identities=19% Similarity=0.179 Sum_probs=65.4
Q ss_pred hhhcCcccccchhh-HHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q 013515 217 LIVNGCVFLQGKAS-SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE 295 (441)
Q Consensus 217 ~~~~g~~~~Qd~ss-~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~ 295 (441)
.|.+|. .+|..|- .-+....+.++|.+||=+||||=|..+.+....-+..+|+.+|+++.|++.+++ +|.+.+.
T Consensus 145 s~eeGA-l~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~ 219 (354)
T KOG0024|consen 145 SFEEGA-LIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTD 219 (354)
T ss_pred chhhcc-cccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEe
Confidence 345554 4555542 223345668999999999999977766554444467899999999999999876 6876544
Q ss_pred EEeccCCCCC------CCCCCCCCccEEEEcCCCCCCcc
Q 013515 296 VLHGDFLNLD------PKDPAYSEVRAILLDPSCSGSGT 328 (441)
Q Consensus 296 ~~~~D~~~~~------~~~~~~~~fD~Il~DpPCSg~G~ 328 (441)
...... ... ...-....||+.+= |||..+
T Consensus 220 ~~~~~~-~~~~~~~~v~~~~g~~~~d~~~d---CsG~~~ 254 (354)
T KOG0024|consen 220 PSSHKS-SPQELAELVEKALGKKQPDVTFD---CSGAEV 254 (354)
T ss_pred eccccc-cHHHHHHHHHhhccccCCCeEEE---ccCchH
Confidence 433222 111 00000134788874 888764
No 271
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.27 E-value=0.041 Score=50.82 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=52.2
Q ss_pred CcccccchhhHHHHHHh-CCCCCCEEEEEcCCCchHHHHHHHHh---cCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 013515 221 GCVFLQGKASSMVAAAL-APKPGWKVLDACSAPGNKTVHLAALM---KGKGKIVACELNKERVRRLKDTIKLSGAANIEV 296 (441)
Q Consensus 221 g~~~~Qd~ss~l~~~~l-~~~~g~~VLDl~ag~G~kt~~la~~~---~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~ 296 (441)
|...+|...-+.+.+.+ ---..+.|+++|.+-||.+..+|.++ ++.++|+++|++-+...+......-+ .++|++
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI~~ 89 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRITF 89 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEE
T ss_pred CeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCceEE
Confidence 44555555444433321 11135699999999999999887655 46799999999654432221111111 167999
Q ss_pred EeccCCCCCCC-----CCCCCCccEEEEcCCCCCCc
Q 013515 297 LHGDFLNLDPK-----DPAYSEVRAILLDPSCSGSG 327 (441)
Q Consensus 297 ~~~D~~~~~~~-----~~~~~~fD~Il~DpPCSg~G 327 (441)
+.||..+.... .........|+.|.--+..-
T Consensus 90 i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~h 125 (206)
T PF04989_consen 90 IQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEH 125 (206)
T ss_dssp EES-SSSTHHHHTSGSS----SSEEEEESS----SS
T ss_pred EECCCCCHHHHHHHHHhhccCCceEEEECCCccHHH
Confidence 99998764411 10113456888998855433
No 272
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.04 E-value=0.068 Score=51.99 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=39.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 289 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~ 289 (441)
..+|||+|||||.-+..+.+..+...+++++|.|+.+++.++..++..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 468999999999866666666665678999999999999888877654
No 273
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=94.99 E-value=0.073 Score=52.03 Aligned_cols=43 Identities=16% Similarity=0.383 Sum_probs=33.0
Q ss_pred CEEEEEcCCCchHHHHHHHHh----cC---CcEEEEEeCCHHHHHHHHHH
Q 013515 243 WKVLDACSAPGNKTVHLAALM----KG---KGKIVACELNKERVRRLKDT 285 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~----~~---~~~V~a~D~~~~rl~~l~~~ 285 (441)
-+||.+||++|-=.-.||-++ +. ..+|+|.|+|+..++.+++.
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 599999999996554444433 21 35799999999999998875
No 274
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.96 E-value=0.62 Score=41.74 Aligned_cols=137 Identities=11% Similarity=0.094 Sum_probs=85.0
Q ss_pred CCchHHHHHHHHhcCCcEEEEEeCC--HHHHHH---HHHHHHHhCCCcEE-EEeccCCCCCCCC-CCCCCccEEEEcCCC
Q 013515 251 APGNKTVHLAALMKGKGKIVACELN--KERVRR---LKDTIKLSGAANIE-VLHGDFLNLDPKD-PAYSEVRAILLDPSC 323 (441)
Q Consensus 251 g~G~kt~~la~~~~~~~~V~a~D~~--~~rl~~---l~~~~~~~g~~~v~-~~~~D~~~~~~~~-~~~~~fD~Il~DpPC 323 (441)
|--.++..|+...+....|+|.-.+ .+..+. +.+|++.+--.++. ....|+.++.... .....||+|+.+=|+
T Consensus 6 GdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNFPH 85 (166)
T PF10354_consen 6 GDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNFPH 85 (166)
T ss_pred cchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeCCC
Confidence 3444556666665534567665443 333332 33566554222333 3456888887543 123689999999999
Q ss_pred CCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchhcC
Q 013515 324 SGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIAMS 402 (441)
Q Consensus 324 Sg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~~ 402 (441)
.|.|.- .....+.....+=...+.+|..+++ +|.|.-+-|+-.|- +.=.|.+. +.+
T Consensus 86 ~G~~~~-------------------~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-~~W~i~~l---A~~ 142 (166)
T PF10354_consen 86 VGGGSE-------------------DGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-DSWNIEEL---AAE 142 (166)
T ss_pred CCCCcc-------------------chhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-ccccHHHH---HHh
Confidence 984421 1245666777777888999999887 68888888887774 33344443 345
Q ss_pred CCeEEecC
Q 013515 403 FGFQLATP 410 (441)
Q Consensus 403 ~~~~~~~~ 410 (441)
.++.+...
T Consensus 143 ~gl~l~~~ 150 (166)
T PF10354_consen 143 AGLVLVRK 150 (166)
T ss_pred cCCEEEEE
Confidence 67776553
No 275
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.81 E-value=0.11 Score=48.17 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=88.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
+.|.++.|+||=-|+....+... +...+++|.|+++.-++.+.+++++.+. +.+++..+|........ ..+|.|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~---d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELE---DEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCcc---CCcCEEE
Confidence 34667999999999999988776 4567999999999999999999999987 67889999985544332 4678887
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEcCCCCChhcHHHHHHHh
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYSTCSIHQVENEDVIKSVL 397 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~-G~lvYsTCS~~~~ENe~vV~~~l 397 (441)
+ .|+|-. +=..||+.....+++ -.+|- .|--|+..+..+|
T Consensus 91 I----AGMGG~------------------------------lI~~ILee~~~~l~~~~rlIL-----QPn~~~~~LR~~L 131 (226)
T COG2384 91 I----AGMGGT------------------------------LIREILEEGKEKLKGVERLIL-----QPNIHTYELREWL 131 (226)
T ss_pred E----eCCcHH------------------------------HHHHHHHHhhhhhcCcceEEE-----CCCCCHHHHHHHH
Confidence 6 244421 114788888877763 46654 5666888999998
Q ss_pred c
Q 013515 398 P 398 (441)
Q Consensus 398 ~ 398 (441)
.
T Consensus 132 ~ 132 (226)
T COG2384 132 S 132 (226)
T ss_pred H
Confidence 5
No 276
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.77 E-value=0.11 Score=49.32 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+.++|+|+|||-=-.++.+.... +....+|+|++...++.+...+..+|. +..+...|...-.+. ...|+.|+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~----~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPK----EPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTT----SEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCC----CCcchhhH
Confidence 46799999999998888765443 346999999999999999999999997 466777787665433 44677765
No 277
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.33 E-value=0.1 Score=48.54 Aligned_cols=74 Identities=14% Similarity=0.074 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.-.+.||+|||-|..|-++..- --.+|..+|..++.++.+++.+...+.....+.+.-..++.+.. .+||+|.+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~--~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~---~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLP--VFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEE---GKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCC--C-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----T---T-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHH--hcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCC---CcEeEEEe
Confidence 3578999999999999877432 24689999999999999998765532234567777777766653 68999975
No 278
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=94.27 E-value=0.94 Score=37.66 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=45.5
Q ss_pred EEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC--CCCCCCCCCCccEE
Q 013515 245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN--LDPKDPAYSEVRAI 317 (441)
Q Consensus 245 VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~--~~~~~~~~~~fD~I 317 (441)
++|++||+|..+ .++........++++|+++.++...+......+...+.+..+|... .+.... ..||.+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDS--ASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCC--CceeEE
Confidence 999999999977 5555432223789999999999985555443222126777777765 332210 257777
No 279
>PRK11524 putative methyltransferase; Provisional
Probab=94.21 E-value=0.095 Score=51.23 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=37.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~ 288 (441)
.+|+.|||-++|+|..+. .|..++ -+.+++|++++-++.++++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~-AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGA-VAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHH-HHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 689999999999997444 444443 5789999999999999999864
No 280
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.20 E-value=0.2 Score=49.90 Aligned_cols=76 Identities=22% Similarity=0.190 Sum_probs=52.0
Q ss_pred hCCCCCCEEEEEcCC-CchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCcc
Q 013515 237 LAPKPGWKVLDACSA-PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 237 l~~~~g~~VLDl~ag-~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
.+.+||++|+=.|+| -|..+.++|..++ .+|+|+|.++++++.+++ +|.+.+.... |......- .+.||
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~----lGAd~~i~~~-~~~~~~~~---~~~~d 231 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKK----LGADHVINSS-DSDALEAV---KEIAD 231 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHH----hCCcEEEEcC-CchhhHHh---HhhCc
Confidence 457899999988877 5566777888764 799999999999988754 5665332222 22222211 13499
Q ss_pred EEEEcCC
Q 013515 316 AILLDPS 322 (441)
Q Consensus 316 ~Il~DpP 322 (441)
.|+.-.|
T Consensus 232 ~ii~tv~ 238 (339)
T COG1064 232 AIIDTVG 238 (339)
T ss_pred EEEECCC
Confidence 9998777
No 281
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=93.96 E-value=0.62 Score=43.21 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=57.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
..|.+||.+|-|-|-..+.+.+. .+ .+-+-+|.++.-+++++...=+- -.||.++.+-..+.....+ .+.||.|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~-d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLP-DKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhcccc-ccCcceeEe
Confidence 67999999999999998888765 33 45566899999999887764322 2578888876665554432 256999998
Q ss_pred cCC
Q 013515 320 DPS 322 (441)
Q Consensus 320 DpP 322 (441)
|.=
T Consensus 176 DTy 178 (271)
T KOG1709|consen 176 DTY 178 (271)
T ss_pred ech
Confidence 753
No 282
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.76 E-value=0.11 Score=48.09 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHH
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~ 284 (441)
.+|+.|||-+||+|..+ ++|..++ .+.+++|+++.-++.+++
T Consensus 190 ~~gdiVlDpF~GSGTT~-~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTA-VAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHH-HHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHH-HHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 67999999999999744 4445543 579999999999988764
No 283
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=93.64 E-value=0.14 Score=52.02 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=47.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFL 302 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~ 302 (441)
.|||+|+|+|-.+...++.. +..|+|+|+-..|.+.+++-+.++|. ++|.+++.-..
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSt 126 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRST 126 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccc
Confidence 58999999999988777764 45799999999999999999999998 67777764433
No 284
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.39 E-value=0.41 Score=44.37 Aligned_cols=93 Identities=18% Similarity=0.277 Sum_probs=64.8
Q ss_pred cchhhHHHHHHhCCCCCCEEEEEcCCCch--HHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccC
Q 013515 226 QGKASSMVAAALAPKPGWKVLDACSAPGN--KTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDF 301 (441)
Q Consensus 226 Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~--kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~ 301 (441)
|..++-++..+..-..-..++++|++-|. .|+.|+... .-.|+++++-.++..+...++.+..+|..+ ++++.++.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 44556666666655566788999766443 344443332 335899999999999999999999888744 68888885
Q ss_pred C-CCCCCCCCCCCccEEEEcC
Q 013515 302 L-NLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 302 ~-~~~~~~~~~~~fD~Il~Dp 321 (441)
. .+... +..+|.+++|-
T Consensus 106 ~e~~~~~---~~~iDF~vVDc 123 (218)
T PF07279_consen 106 PEEVMPG---LKGIDFVVVDC 123 (218)
T ss_pred HHHHHhh---ccCCCEEEEeC
Confidence 3 33333 36789999984
No 285
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.37 E-value=0.34 Score=53.23 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc------C-----CcEEEEEeCCH---HHHHHHH-----------HHHHH-----hC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK------G-----KGKIVACELNK---ERVRRLK-----------DTIKL-----SG 290 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~------~-----~~~V~a~D~~~---~rl~~l~-----------~~~~~-----~g 290 (441)
..-+|+|+|-|+|.-.+...+... + .-+++++|.++ +-+..+. ...+. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346899999999998877766551 1 24789999865 2222221 11111 13
Q ss_pred CC---------cEEEEeccCCCCCCCCCCCCCccEEEEcC--CCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHH
Q 013515 291 AA---------NIEVLHGDFLNLDPKDPAYSEVRAILLDP--SCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSA 359 (441)
Q Consensus 291 ~~---------~v~~~~~D~~~~~~~~~~~~~fD~Il~Dp--PCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~ 359 (441)
+. ++++..+|+.+...... ..||.|++|+ | .++||. |+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~--~~~d~~~lD~FsP-------~~np~~-------------W~~-------- 186 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLD--ARADAWFLDGFAP-------AKNPDM-------------WSP-------- 186 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhcc--ccccEEEeCCCCC-------ccChhh-------------ccH--------
Confidence 21 34567788876554432 4699999996 5 356765 333
Q ss_pred HHHHHHHHHhCCCC-CcEEEEEcCCCCChhcHHHHHHHhchhcCCCeEEec
Q 013515 360 FQKKALRHALSFPG-VERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 360 ~Q~~lL~~a~~~~~-~G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
+++....++.+ +|+++--||+ ..|.+-|. ..||++..
T Consensus 187 ---~~~~~l~~~~~~~~~~~t~t~a-------~~vr~~l~---~~GF~v~~ 224 (662)
T PRK01747 187 ---NLFNALARLARPGATLATFTSA-------GFVRRGLQ---EAGFTVRK 224 (662)
T ss_pred ---HHHHHHHHHhCCCCEEEEeehH-------HHHHHHHH---HcCCeeee
Confidence 44555555555 6776644555 78888774 46887754
No 286
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=93.30 E-value=0.53 Score=45.55 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCchH----HHHHHHHhcC----CcEEEEEeCCHHHHHHHHH
Q 013515 242 GWKVLDACSAPGNK----TVHLAALMKG----KGKIVACELNKERVRRLKD 284 (441)
Q Consensus 242 g~~VLDl~ag~G~k----t~~la~~~~~----~~~V~a~D~~~~rl~~l~~ 284 (441)
.=+||-++|++|-= +..+.+..+. ..+|+|.|+|...++.|+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 45899999999954 4444444432 4789999999999998863
No 287
>PRK13699 putative methylase; Provisional
Probab=93.09 E-value=0.23 Score=46.96 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=38.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g 290 (441)
-.+|+.|||-+||+|..... |..++ .+.+++|+++.-.+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~a-a~~~~--r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVA-ALQSG--RRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHH-HHHcC--CCEEEEecCHHHHHHHHHHHHHHH
Confidence 36899999999999975543 34432 578999999999999988887643
No 288
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.21 E-value=0.36 Score=45.96 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
..+|..-.|+||.|||.|-++... .-.|+|+|..+-+ ..+-.. ..|+-...|...+.+.. .+.|-.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma-----~sL~dt--g~v~h~r~DGfk~~P~r---~~idWmV 275 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMA-----QSLMDT--GQVTHLREDGFKFRPTR---SNIDWMV 275 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccchhh-----hhhhcc--cceeeeeccCcccccCC---CCCceEE
Confidence 457999999999999999988765 4799999977532 222222 35788889998888743 6789888
Q ss_pred EcCC
Q 013515 319 LDPS 322 (441)
Q Consensus 319 ~DpP 322 (441)
+|.=
T Consensus 276 CDmV 279 (358)
T COG2933 276 CDMV 279 (358)
T ss_pred eehh
Confidence 8753
No 289
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=91.70 E-value=0.41 Score=45.56 Aligned_cols=115 Identities=16% Similarity=0.249 Sum_probs=70.5
Q ss_pred HHHHhCCCC-CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 013515 233 VAAALAPKP-GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311 (441)
Q Consensus 233 ~~~~l~~~~-g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 311 (441)
++.-+...| ...|.|+|||-+-.+. .....|+++|+.+ -|-.++..|..++|..+
T Consensus 171 ii~~ik~r~~~~vIaD~GCGEakiA~------~~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d--- 226 (325)
T KOG3045|consen 171 IIRKIKRRPKNIVIADFGCGEAKIAS------SERHKVHSFDLVA---------------VNERVIACDMRNVPLED--- 226 (325)
T ss_pred HHHHHHhCcCceEEEecccchhhhhh------ccccceeeeeeec---------------CCCceeeccccCCcCcc---
Confidence 333444444 4578999999986554 2236899999763 23457789999998876
Q ss_pred CCccEEEEcCCCCCC-cccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChhcH
Q 013515 312 SEVRAILLDPSCSGS-GTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENE 390 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~-G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ENe 390 (441)
+++|+++. |=++ |+ + + ...+..|.+.|+.|.++|..---+..+.-
T Consensus 227 ~svDvaV~---CLSLMgt------------------n-~------------~df~kEa~RiLk~gG~l~IAEv~SRf~dv 272 (325)
T KOG3045|consen 227 ESVDVAVF---CLSLMGT------------------N-L------------ADFIKEANRILKPGGLLYIAEVKSRFSDV 272 (325)
T ss_pred CcccEEEe---eHhhhcc------------------c-H------------HHHHHHHHHHhccCceEEEEehhhhcccH
Confidence 78999987 4222 21 0 0 36688899999966666654322333222
Q ss_pred HHHHHHhchhcCCCeEEe
Q 013515 391 DVIKSVLPIAMSFGFQLA 408 (441)
Q Consensus 391 ~vV~~~l~~~~~~~~~~~ 408 (441)
..|++.....||.+.
T Consensus 273 ---~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 273 ---KGFVRALTKLGFDVK 287 (325)
T ss_pred ---HHHHHHHHHcCCeee
Confidence 224433334566553
No 290
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.60 E-value=0.81 Score=46.11 Aligned_cols=48 Identities=25% Similarity=0.330 Sum_probs=36.9
Q ss_pred hCCCCCCEEEEEcCCCchHHH-HHHHHhcCCcEEEEEeCCHHHHHHHHHH
Q 013515 237 LAPKPGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDT 285 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~-~la~~~~~~~~V~a~D~~~~rl~~l~~~ 285 (441)
....++++|+=+||||=|..+ .+++. .+..+|+++|.++.|++.+++.
T Consensus 164 ~~~~~~~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 164 AAVRPGGTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHh
Confidence 334556699999999977654 44554 4668999999999999998764
No 291
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=91.32 E-value=2.1 Score=45.85 Aligned_cols=83 Identities=16% Similarity=0.128 Sum_probs=55.8
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCC--------CcEEEEeccCCCCCCC
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA--------ANIEVLHGDFLNLDPK 307 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~--------~~v~~~~~D~~~~~~~ 307 (441)
++.+.|..||= ..|+|+.+.++++.+. .+.+|++++.+..++..+.+.+..+++ .++.++.+|+.+....
T Consensus 75 ~~~~~gKvVLV-TGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFV-AGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEE-ECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 34456777774 5557889999887663 346899999999888777665544221 2578889999875422
Q ss_pred CCCCCCccEEEEc
Q 013515 308 DPAYSEVRAILLD 320 (441)
Q Consensus 308 ~~~~~~fD~Il~D 320 (441)
...++.+|+|+..
T Consensus 154 ~~aLggiDiVVn~ 166 (576)
T PLN03209 154 GPALGNASVVICC 166 (576)
T ss_pred HHHhcCCCEEEEc
Confidence 1123568998874
No 292
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=91.07 E-value=3.6 Score=36.69 Aligned_cols=80 Identities=10% Similarity=0.112 Sum_probs=46.3
Q ss_pred hHHHHHHhCC-CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC---
Q 013515 230 SSMVAAALAP-KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--- 305 (441)
Q Consensus 230 s~l~~~~l~~-~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~--- 305 (441)
..++-.+++. .++.+|+-+||=+-...+. ........++-+|.|.+ .+.+|-+ .++.-|.....
T Consensus 13 ~~l~~~l~~~~~~~~~iaclstPsl~~~l~--~~~~~~~~~~Lle~D~R--------F~~~~~~--~F~fyD~~~p~~~~ 80 (162)
T PF10237_consen 13 EFLARELLDGALDDTRIACLSTPSLYEALK--KESKPRIQSFLLEYDRR--------FEQFGGD--EFVFYDYNEPEELP 80 (162)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcHHHHHHH--hhcCCCccEEEEeecch--------HHhcCCc--ceEECCCCChhhhh
Confidence 3344344442 4567898777755544433 22234578888999853 3334432 35555555432
Q ss_pred CCCCCCCCccEEEEcCCC
Q 013515 306 PKDPAYSEVRAILLDPSC 323 (441)
Q Consensus 306 ~~~~~~~~fD~Il~DpPC 323 (441)
... .++||+|++|||-
T Consensus 81 ~~l--~~~~d~vv~DPPF 96 (162)
T PF10237_consen 81 EEL--KGKFDVVVIDPPF 96 (162)
T ss_pred hhc--CCCceEEEECCCC
Confidence 112 2689999999995
No 293
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.81 E-value=0.34 Score=50.30 Aligned_cols=135 Identities=13% Similarity=0.023 Sum_probs=71.9
Q ss_pred CCeEEeCCCCCCCCChhhhcCcc-cccchhhHHHHHHhCCCCC--CEEEEEcCCCchHHHHHHHHhcCCcEEEE---EeC
Q 013515 201 PDLLILPPGCDLHVHPLIVNGCV-FLQGKASSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVA---CEL 274 (441)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~g~~-~~Qd~ss~l~~~~l~~~~g--~~VLDl~ag~G~kt~~la~~~~~~~~V~a---~D~ 274 (441)
.+.+.|++++. .|.+|.- |++....++... . ..| -.+||+|||.|+++.+|.++ ...++. .|.
T Consensus 82 gd~~~FPgggt-----~F~~Ga~~Yid~i~~~~~~~-~--~~g~iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~ 150 (506)
T PF03141_consen 82 GDKFRFPGGGT-----MFPHGADHYIDQIAEMIPLI-K--WGGGIRTALDVGCGVASFGAYLLER---NVTTMSFAPNDE 150 (506)
T ss_pred CCEEEeCCCCc-----cccCCHHHHHHHHHHHhhcc-c--cCCceEEEEeccceeehhHHHHhhC---CceEEEcccccC
Confidence 35678886643 3555542 333233222211 1 223 36999999999999998775 223323 244
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHH
Q 013515 275 NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERL 354 (441)
Q Consensus 275 ~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~ 354 (441)
++..++.+-+ -|+..+.- ..-...++..+ ..||.|= ||...+ .|. ..+
T Consensus 151 ~~~qvqfale----RGvpa~~~-~~~s~rLPfp~---~~fDmvH----csrc~i-------~W~------------~~~- 198 (506)
T PF03141_consen 151 HEAQVQFALE----RGVPAMIG-VLGSQRLPFPS---NAFDMVH----CSRCLI-------PWH------------PND- 198 (506)
T ss_pred Cchhhhhhhh----cCcchhhh-hhccccccCCc---cchhhhh----cccccc-------cch------------hcc-
Confidence 4444444432 35543211 11223455444 6789884 665443 121 111
Q ss_pred HHHHHHHHHHHHHHhCCCC-CcEEEEEcCCCC
Q 013515 355 NKLSAFQKKALRHALSFPG-VERVVYSTCSIH 385 (441)
Q Consensus 355 ~~l~~~Q~~lL~~a~~~~~-~G~lvYsTCS~~ 385 (441)
-.+|-..-+.|+ ||++|+|.=-++
T Consensus 199 -------g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 199 -------GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred -------cceeehhhhhhccCceEEecCCccc
Confidence 124444556676 799999987777
No 294
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=89.64 E-value=3.8 Score=40.33 Aligned_cols=125 Identities=19% Similarity=0.226 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.|.+||=. .|+|+.+.+++..+.. ...|+++..++.............+. .++.++.+|..+.......+..+|.|+
T Consensus 4 ~~k~vlVt-G~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVT-GASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEE-CCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 35677755 4789999999886643 34787777776544433322222232 467888899887542211123579888
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEE-EcCC
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY-STCS 383 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvY-sTCS 383 (441)
..+. ........ +.+ .+.+.........+++.+.+....|.+|| ||++
T Consensus 83 h~A~---~~~~~~~~-------------~~~-~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~ 131 (325)
T PLN02989 83 HTAS---PVAITVKT-------------DPQ-VELINPAVNGTINVLRTCTKVSSVKRVILTSSMA 131 (325)
T ss_pred EeCC---CCCCCCCC-------------ChH-HHHHHHHHHHHHHHHHHHHHcCCceEEEEecchh
Confidence 8654 11110000 000 22333445555677887766544466666 4443
No 295
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=89.46 E-value=3.3 Score=40.50 Aligned_cols=122 Identities=18% Similarity=0.208 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
|.+|| +..|+|..+.+++..+... .+|++++.+..............+. ++++++.+|..+.......+..+|.|+.
T Consensus 4 ~~~il-VtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVC-VTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEE-EECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 45676 5556899999998876443 4788888765433322222111121 4688899998865422111245799998
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEE-EcC
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY-STC 382 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvY-sTC 382 (441)
-+....... ..| ..+.+.........+|+.+.+....+.+|| ||+
T Consensus 83 ~A~~~~~~~--~~~----------------~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~ 128 (322)
T PLN02662 83 TASPFYHDV--TDP----------------QAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSM 128 (322)
T ss_pred eCCcccCCC--CCh----------------HHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCH
Confidence 776432110 000 012223344555677777765434456776 444
No 296
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=89.17 E-value=9.8 Score=35.89 Aligned_cols=82 Identities=10% Similarity=0.136 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
.|.+||=.| |+|+.+.++++.+.. ..+|+.++.+...++.+...+...+. ++.++.+|..+...- .....
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 366777555 688899999887643 35899999998888877777766553 567788888764321 01124
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.|+..+..+
T Consensus 89 ~id~vi~~ag~~ 100 (259)
T PRK08213 89 HVDILVNNAGAT 100 (259)
T ss_pred CCCEEEECCCCC
Confidence 689999876653
No 297
>PLN00198 anthocyanidin reductase; Provisional
Probab=88.23 E-value=4.4 Score=40.20 Aligned_cols=125 Identities=9% Similarity=0.108 Sum_probs=68.4
Q ss_pred hCCCCCCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCCCCCCCCc
Q 013515 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~-g~~~v~~~~~D~~~~~~~~~~~~~f 314 (441)
|.|..+.+|| +..|+|..+.+++..+... .+|+++..+......... +..+ ...++.++.+|..+...-...+..+
T Consensus 4 ~~~~~~~~vl-ItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 81 (338)
T PLN00198 4 LTPTGKKTAC-VIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDEESFEAPIAGC 81 (338)
T ss_pred ccCCCCCeEE-EECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCChHHHHHHHhcC
Confidence 3455577777 5666799999998876433 478777766543332221 1111 1235788899988654211112457
Q ss_pred cEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccH-H-HHHHHHHHHHHHHHHHhCCCCCc-EEEEEcCC
Q 013515 315 RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEM-E-RLNKLSAFQKKALRHALSFPGVE-RVVYSTCS 383 (441)
Q Consensus 315 D~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~-~-~~~~l~~~Q~~lL~~a~~~~~~G-~lvYsTCS 383 (441)
|.|+--+.-.... . .++ . -..........+|+.+.+....+ .+..||++
T Consensus 82 d~vih~A~~~~~~-------------------~-~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~ 133 (338)
T PLN00198 82 DLVFHVATPVNFA-------------------S-EDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAA 133 (338)
T ss_pred CEEEEeCCCCccC-------------------C-CChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecce
Confidence 9888755311000 0 011 1 12445566677888876643334 45555655
No 298
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=88.13 E-value=4 Score=38.27 Aligned_cols=79 Identities=11% Similarity=0.183 Sum_probs=53.6
Q ss_pred EEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-------CCCCCCCcc
Q 013515 244 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-------KDPAYSEVR 315 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~-------~~~~~~~fD 315 (441)
+|| +..|+|+.+.+++..+. ...+|++++.++...+.+...+...+ .++.++.+|..+... ........|
T Consensus 3 ~vl-ItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 3 TAL-VTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred EEE-EcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 455 44578889999887653 33589999999888887777666555 367888888876431 011124579
Q ss_pred EEEEcCCCC
Q 013515 316 AILLDPSCS 324 (441)
Q Consensus 316 ~Il~DpPCS 324 (441)
.|+..+-.+
T Consensus 81 ~vi~~a~~~ 89 (255)
T TIGR01963 81 ILVNNAGIQ 89 (255)
T ss_pred EEEECCCCC
Confidence 998876543
No 299
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=87.78 E-value=0.64 Score=42.43 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=65.8
Q ss_pred CCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHH------------HHHHhC-CCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 251 APGNKTVHLAALMKGK-GKIVACELNKERVRRLKD------------TIKLSG-AANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 251 g~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~------------~~~~~g-~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
|.|+.++.+|..+... .+|+++|+++++++.+.+ .+++.. -.+..+. .|.... ....|+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a------i~~adv 79 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA------IKDADV 79 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH------HHH-SE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh------hhccce
Confidence 6676666666655433 599999999999987653 222211 1233332 222221 134688
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChhcHHHHHHH
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ENe~vV~~~ 396 (441)
+++-.|.--.. ...||.. .+ .+.++...+.++.|.+|---+|+-|.-.++++..+
T Consensus 80 ~~I~VpTP~~~--~~~~Dls-------------------~v----~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~i 134 (185)
T PF03721_consen 80 VFICVPTPSDE--DGSPDLS-------------------YV----ESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPI 134 (185)
T ss_dssp EEE----EBET--TTSBETH-------------------HH----HHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHH
T ss_pred EEEecCCCccc--cCCccHH-------------------HH----HHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhh
Confidence 98888754332 2233331 11 12222222334546666667899999999999999
Q ss_pred hchhcC--CCeEEecCCCCCCCcc
Q 013515 397 LPIAMS--FGFQLATPFPNGTAEA 418 (441)
Q Consensus 397 l~~~~~--~~~~~~~~~~~~~~~~ 418 (441)
|++... .+|.+.- .|+.-..|
T Consensus 135 le~~~~~~~~f~la~-~PErl~~G 157 (185)
T PF03721_consen 135 LEKRSGKKEDFHLAY-SPERLREG 157 (185)
T ss_dssp HHHHCCTTTCEEEEE-------TT
T ss_pred hhhhcccccCCeEEE-CCCccCCC
Confidence 976443 3565532 45555544
No 300
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=87.54 E-value=4.1 Score=40.61 Aligned_cols=105 Identities=17% Similarity=0.096 Sum_probs=69.5
Q ss_pred HHhCCCCC----CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 235 AALAPKPG----WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 235 ~~l~~~~g----~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
..++...| ...+|+|+|.|..+-++.... + +|-+++.+..-+-....++. .| |+.+-+|..+-.|.
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~~P~--- 236 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQDTPK--- 236 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-CC---cceecccccccCCC---
Confidence 44554455 789999999999999998854 3 47788888777777777765 55 55666786543222
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcEEEEEcC
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VERVVYSTC 382 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~lvYsTC 382 (441)
-|.|++ +=-+|- |+-++. .++|+++++-++ +|.|+-.-|
T Consensus 237 ---~daI~m---kWiLhd--------------------wtDedc-------vkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 237 ---GDAIWM---KWILHD--------------------WTDEDC-------VKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ---cCeEEE---Eeeccc--------------------CChHHH-------HHHHHHHHHhCCCCCEEEEEec
Confidence 256764 221221 334443 578999999766 677766555
No 301
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=87.05 E-value=5.7 Score=39.72 Aligned_cols=81 Identities=14% Similarity=0.084 Sum_probs=51.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
+.+||=. .|+|..+.++++.+... .+|++++.+......+...+.. + .+++++.+|..+...-......+|.|+--
T Consensus 10 ~~~vLVt-G~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 86 (353)
T PLN02896 10 TGTYCVT-GATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE-G-DRLRLFRADLQEEGSFDEAVKGCDGVFHV 86 (353)
T ss_pred CCEEEEE-CCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc-C-CeEEEEECCCCCHHHHHHHHcCCCEEEEC
Confidence 6678844 46899999998877433 4899888876554443333221 2 46788888987643211111357999887
Q ss_pred CCCCC
Q 013515 321 PSCSG 325 (441)
Q Consensus 321 pPCSg 325 (441)
+..++
T Consensus 87 A~~~~ 91 (353)
T PLN02896 87 AASME 91 (353)
T ss_pred Ccccc
Confidence 76544
No 302
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=86.48 E-value=1.8 Score=41.04 Aligned_cols=124 Identities=18% Similarity=0.235 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-CCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD-PKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~-~~~~~~~~fD~Il~ 319 (441)
+|+. |+..+|+--.+.++ +...-++.++|++++-...++.++. +..++++..+|..... ...+..++=-.||+
T Consensus 89 ~~~~-l~~YpGSP~lA~~l---lR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLI 162 (279)
T COG2961 89 PGGG-LRYYPGSPLLARQL---LREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLI 162 (279)
T ss_pred CCCC-cccCCCCHHHHHHH---cchhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEe
Confidence 4444 77777776555444 3445799999999999999999998 5678999999976432 11222234468999
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChhcHHHHHHHhch
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPI 399 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ENe~vV~~~l~~ 399 (441)
|||.-- +++...+. +.|+.+++.-..|+. |-..|--+-..+..|++.
T Consensus 163 DPPfE~-------------------------~~eY~rvv----~~l~~~~kRf~~g~y----aiWYPik~r~~~~~f~~~ 209 (279)
T COG2961 163 DPPFEL-------------------------KDEYQRVV----EALAEAYKRFATGTY----AIWYPIKDRRQIRRFLRA 209 (279)
T ss_pred CCCccc-------------------------ccHHHHHH----HHHHHHHHhhcCceE----EEEEeecchHHHHHHHHH
Confidence 999521 22333332 334445443333532 233566678888888875
Q ss_pred hcCC
Q 013515 400 AMSF 403 (441)
Q Consensus 400 ~~~~ 403 (441)
.+..
T Consensus 210 L~~~ 213 (279)
T COG2961 210 LEAL 213 (279)
T ss_pred Hhhc
Confidence 4443
No 303
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=86.19 E-value=0.8 Score=41.85 Aligned_cols=52 Identities=25% Similarity=0.232 Sum_probs=41.5
Q ss_pred cchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHH
Q 013515 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE 277 (441)
Q Consensus 226 Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~ 277 (441)
|+.-+.-+..+.++++|++|+|+--|.|.+|..++..++++|.|+++-..+.
T Consensus 33 ~~Rhp~E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 33 KARHPGEVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred hccCccceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 3333333444667899999999999999999999999999999999765543
No 304
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=86.16 E-value=2.5 Score=40.68 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-C--------------------------
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-A-------------------------- 292 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~-------------------------- 292 (441)
..|.++||+||||--.- +.....-...|+..|..+.-.+.+++-++.-|. +
T Consensus 55 ~~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 35889999999995332 222222336899999999888777665543221 0
Q ss_pred -cEE-EEeccCCCCCCCCC---CCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q 013515 293 -NIE-VLHGDFLNLDPKDP---AYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRH 367 (441)
Q Consensus 293 -~v~-~~~~D~~~~~~~~~---~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~ 367 (441)
.|+ ++..|+.+.++-.+ ....||+|+. +-. .+-.-.-.......|++
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s---~fc-------------------------LE~a~~d~~~y~~al~n 184 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVIS---SFC-------------------------LESACKDLDEYRRALRN 184 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEE---ESS-------------------------HHHH-SSHHHHHHHHHH
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhh---hHH-------------------------HHHHcCCHHHHHHHHHH
Confidence 133 66788877665432 1134888863 111 12222222345678889
Q ss_pred HhCCCC-CcEEEEEcCC------C------CChhcHHHHHHHhchhcCCCeEEec
Q 013515 368 ALSFPG-VERVVYSTCS------I------HQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 368 a~~~~~-~G~lvYsTCS------~------~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
..+++| ||.||....- + .--=||+.|.+.|+. .||.+..
T Consensus 185 i~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~---aG~~i~~ 236 (256)
T PF01234_consen 185 ISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEE---AGFDIED 236 (256)
T ss_dssp HHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHH---TTEEEEE
T ss_pred HHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHH---cCCEEEe
Confidence 999988 7877664321 0 012478889888853 4776644
No 305
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=86.03 E-value=5.7 Score=39.33 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=66.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC---cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK---GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~---~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
|.+||= ..|+|+.+.++++.+... .+|+++|.+......+.+.+ +-.++.++.+|..+...-...+..+|.|+
T Consensus 4 ~k~vLV-TGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILI-TGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---PAPCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEE-eCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---CCCcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 567774 455799999998876432 47888988765543332222 22467888999887542111124579998
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccH-HHHHHHHHHHHHHHHHHhCCCCCcEEEEEcC
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEM-ERLNKLSAFQKKALRHALSFPGVERVVYSTC 382 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~-~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTC 382 (441)
.-+....... .+ .++ +.+.........+++.+.+. ..+.+||.+.
T Consensus 80 h~Ag~~~~~~----~~--------------~~~~~~~~~Nv~g~~~ll~aa~~~-~~~~iV~~SS 125 (324)
T TIGR03589 80 HAAALKQVPA----AE--------------YNPFECIRTNINGAQNVIDAAIDN-GVKRVVALST 125 (324)
T ss_pred ECcccCCCch----hh--------------cCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeC
Confidence 7554321100 00 112 23334445566677776643 3367777543
No 306
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=85.98 E-value=6.8 Score=36.66 Aligned_cols=83 Identities=13% Similarity=0.205 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---------CC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---------DP 309 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~---------~~ 309 (441)
.++.+||=.| |+|+.+..++..+.. ..+|++++.+...++.+.+.++..+...+.++..|....... ..
T Consensus 10 ~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 4577788665 678888888876643 349999999998888887777776655667777777532211 01
Q ss_pred CCCCccEEEEcCCC
Q 013515 310 AYSEVRAILLDPSC 323 (441)
Q Consensus 310 ~~~~fD~Il~DpPC 323 (441)
.+.++|.|+..+..
T Consensus 89 ~~~~id~vi~~Ag~ 102 (247)
T PRK08945 89 QFGRLDGVLHNAGL 102 (247)
T ss_pred HhCCCCEEEECCcc
Confidence 12468999986643
No 307
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=85.72 E-value=3.6 Score=38.60 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+.+|| +..|+|+.+.+++..+.. ..+|+.++.++...+.+...++..+. ++.++.+|+.+...-. ...+.
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG-KAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45666 566689999999887643 35899999999888877777766553 5778888887543110 01246
Q ss_pred ccEEEEcCC
Q 013515 314 VRAILLDPS 322 (441)
Q Consensus 314 fD~Il~DpP 322 (441)
+|.|+..+.
T Consensus 82 ~d~vi~~a~ 90 (258)
T PRK12429 82 VDILVNNAG 90 (258)
T ss_pred CCEEEECCC
Confidence 799988654
No 308
>PLN02650 dihydroflavonol-4-reductase
Probab=85.23 E-value=8.6 Score=38.34 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
..+|| +..|+|..+.+++..+... .+|++++.+......+.......+. .++.++.+|..+...-......+|.|+-
T Consensus 5 ~k~iL-VTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH 83 (351)
T PLN02650 5 KETVC-VTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFH 83 (351)
T ss_pred CCEEE-EeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEE
Confidence 34666 6677999999998876433 5898888876655544333222222 2477888998765422111235788887
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYS 380 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYs 380 (441)
-+....... . +.. .+.+.........+|+.+.+....+.+||+
T Consensus 84 ~A~~~~~~~--~---------------~~~-~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~ 126 (351)
T PLN02650 84 VATPMDFES--K---------------DPE-NEVIKPTVNGMLSIMKACAKAKTVRRIVFT 126 (351)
T ss_pred eCCCCCCCC--C---------------Cch-hhhhhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 664321110 0 000 122333445566778887654324567774
No 309
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=84.80 E-value=0.25 Score=45.45 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHH
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~ 284 (441)
..++||+|||-|-.|.+|+..+ .+|+|.|.|..|..+++.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 4589999999999999998876 469999999988777654
No 310
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=84.73 E-value=2.3 Score=41.02 Aligned_cols=63 Identities=10% Similarity=0.115 Sum_probs=43.1
Q ss_pred CEEEEEcCCC--chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 013515 243 WKVLDACSAP--GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (441)
Q Consensus 243 ~~VLDl~ag~--G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~ 305 (441)
...||+|||- -+-+-++|+...+..+|+-+|+++-.+..++..+....-....++.+|+.+..
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~ 134 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPE 134 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHH
Confidence 5799999993 34577788888888999999999999999888887653223789999998754
No 311
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=84.43 E-value=11 Score=37.08 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
|.+|| +..|+|..+.+++..+... .+|+++..+....+...+.....+. .+++++.+|..+...-......+|.|+.
T Consensus 5 ~~~vl-VTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 83 (322)
T PLN02986 5 GKLVC-VTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH 83 (322)
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence 55666 6677999999998865433 4787766555443333333222222 4688888998765421111235798887
Q ss_pred cCC
Q 013515 320 DPS 322 (441)
Q Consensus 320 DpP 322 (441)
-+.
T Consensus 84 ~A~ 86 (322)
T PLN02986 84 TAS 86 (322)
T ss_pred eCC
Confidence 654
No 312
>PRK07326 short chain dehydrogenase; Provisional
Probab=83.88 E-value=4.5 Score=37.48 Aligned_cols=77 Identities=10% Similarity=0.120 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+..||=.| |+|+.+.+++..+.. ..+|++++.++..+..+.+.+... ..+.++.+|..+...-. ..+..
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56778666 588888888876643 358999999988877776655432 35777888876543110 01246
Q ss_pred ccEEEEcC
Q 013515 314 VRAILLDP 321 (441)
Q Consensus 314 fD~Il~Dp 321 (441)
+|.|+..+
T Consensus 83 ~d~vi~~a 90 (237)
T PRK07326 83 LDVLIANA 90 (237)
T ss_pred CCEEEECC
Confidence 78888765
No 313
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=83.29 E-value=2.7 Score=39.50 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHh-CCC-cEEEEec-cCCCCCCCC-CCCCCccE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAA-NIEVLHG-DFLNLDPKD-PAYSEVRA 316 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~-g~~-~v~~~~~-D~~~~~~~~-~~~~~fD~ 316 (441)
++-+.||+|.|.--.--.+.-.+.+ =+-++.|+|+..++.++.++..+ ++. .|++... |-..+-... ...+.||.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYg-wrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYG-WRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeec-ceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 4567899987754332222222222 36789999999999999999887 553 3555443 333332221 11368999
Q ss_pred EEEcCCCCCC
Q 013515 317 ILLDPSCSGS 326 (441)
Q Consensus 317 Il~DpPCSg~ 326 (441)
++++||--++
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999997554
No 314
>PRK08251 short chain dehydrogenase; Provisional
Probab=82.96 E-value=16 Score=34.02 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g-~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
+.+||=.| |+|+.+.+++..+.. ..+|+.++.++.+++.+...+.... -.++.++..|..+...- ...++
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34566444 688899988877643 3589999999998888777665532 13577888898865311 01235
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.|+..+..+
T Consensus 81 ~id~vi~~ag~~ 92 (248)
T PRK08251 81 GLDRVIVNAGIG 92 (248)
T ss_pred CCCEEEECCCcC
Confidence 689999876543
No 315
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.93 E-value=3 Score=41.04 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=44.8
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHH
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~ 284 (441)
.+....+++||+.|.=.|.|.=|.+..+.....++++|+++|+++++.+.+++
T Consensus 183 Aa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 183 AAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred hhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 34456788999999999999888888887777788999999999999988754
No 316
>PRK06194 hypothetical protein; Provisional
Probab=82.82 E-value=9 Score=36.75 Aligned_cols=83 Identities=12% Similarity=0.209 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+.+|| +..|+|+.+.+++..+.. ..+|+.+|.+.+.++...+.+...|. ++.++.+|+.+...-. ..++.
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56777 666778899999876643 35899999998887777666655453 5777889987643110 11246
Q ss_pred ccEEEEcCCCCCC
Q 013515 314 VRAILLDPSCSGS 326 (441)
Q Consensus 314 fD~Il~DpPCSg~ 326 (441)
+|.|+..+.-+..
T Consensus 84 id~vi~~Ag~~~~ 96 (287)
T PRK06194 84 VHLLFNNAGVGAG 96 (287)
T ss_pred CCEEEECCCCCCC
Confidence 7999987765443
No 317
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=82.60 E-value=3.5 Score=35.84 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=29.3
Q ss_pred EEcCCCc--hHHHHHH-HHhcCCcEEEEEeCCHHHHHHHHHH--HHHh
Q 013515 247 DACSAPG--NKTVHLA-ALMKGKGKIVACELNKERVRRLKDT--IKLS 289 (441)
Q Consensus 247 Dl~ag~G--~kt~~la-~~~~~~~~V~a~D~~~~rl~~l~~~--~~~~ 289 (441)
|+||..| ..+..+. +.....++|+++|.++..++.++.+ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 6666654 2455678999999999999999999 5544
No 318
>PRK07576 short chain dehydrogenase; Provisional
Probab=82.35 E-value=13 Score=35.29 Aligned_cols=80 Identities=9% Similarity=0.164 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
++.+||=.| |+|+.+.+++..+.. ..+|++++.+++.+....+.+...+. ++.++..|..+...-. ..+.
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467888665 578888888776543 35899999998888777666666553 4567788887533110 1124
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.+|.++..+.
T Consensus 86 ~iD~vi~~ag 95 (264)
T PRK07576 86 PIDVLVSGAA 95 (264)
T ss_pred CCCEEEECCC
Confidence 6799998663
No 319
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.09 E-value=6.1 Score=37.18 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
|.+|| +..|+|+.+.+++..+.. ...|+.++.++...+.+.+.++..|. ++.++.+|..+..... ...+.
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56777 667788899888876633 35899999999888888777776653 5677888887644211 01245
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.|+..+.+.
T Consensus 85 ~d~vi~~ag~~ 95 (262)
T PRK13394 85 VDILVSNAGIQ 95 (262)
T ss_pred CCEEEECCccC
Confidence 79998876554
No 320
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.06 E-value=12 Score=34.92 Aligned_cols=80 Identities=10% Similarity=0.190 Sum_probs=51.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCc-EEEE-EeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKG-KIVA-CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~-~V~a-~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
|.+|| +..|+|+.+.++++.+...| +|+. .+.+....+.+.+.++..+ .++.++.+|..+...- ...++
T Consensus 4 ~~~vl-ItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 4 GKVAL-VTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALG-RKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 55677 45557888999888775443 6655 4666777766666666555 3577788888764311 01124
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
..|.|+..+..
T Consensus 82 ~id~vi~~ag~ 92 (250)
T PRK08063 82 RLDVFVNNAAS 92 (250)
T ss_pred CCCEEEECCCC
Confidence 57999987653
No 321
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=82.04 E-value=13 Score=34.82 Aligned_cols=81 Identities=10% Similarity=0.126 Sum_probs=54.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 313 (441)
|..+|=.| |+|+.+..++..+.. ..+|+.++.++..+..+.+.++..+. .+.++..|..+...- ...++.
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 86 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTHKQEVEAAIEHIEKDIGP 86 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 55677554 678888888877643 35899999998888877777766553 466777887764311 011356
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.|+..+...
T Consensus 87 id~vi~~ag~~ 97 (254)
T PRK08085 87 IDVLINNAGIQ 97 (254)
T ss_pred CCEEEECCCcC
Confidence 89999877543
No 322
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=81.92 E-value=3.7 Score=40.87 Aligned_cols=57 Identities=25% Similarity=0.252 Sum_probs=46.4
Q ss_pred HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 013515 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (441)
Q Consensus 232 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~ 292 (441)
.+...+++++|+.|.=.|+|-=|.+..+...+.+.++|+|+|+++.+++.+++ +|..
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT 232 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT 232 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc
Confidence 45567889999999999998777777776666778999999999999998754 5653
No 323
>PRK08339 short chain dehydrogenase; Provisional
Probab=81.63 E-value=18 Score=34.33 Aligned_cols=80 Identities=10% Similarity=0.229 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC------CCCCCc
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD------PAYSEV 314 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------~~~~~f 314 (441)
|..+|=. .|+|+.+..++..+. ...+|+.++.++..++.+.+.+....-.++.++..|+.+...-. ..++.+
T Consensus 8 ~k~~lIt-Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i 86 (263)
T PRK08339 8 GKLAFTT-ASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP 86 (263)
T ss_pred CCEEEEe-CCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence 5566644 456777888877663 33589999999988888777765542235778888887643110 123568
Q ss_pred cEEEEcCC
Q 013515 315 RAILLDPS 322 (441)
Q Consensus 315 D~Il~DpP 322 (441)
|.++..+-
T Consensus 87 D~lv~nag 94 (263)
T PRK08339 87 DIFFFSTG 94 (263)
T ss_pred cEEEECCC
Confidence 98887553
No 324
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=81.39 E-value=2.1 Score=43.43 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=66.1
Q ss_pred CCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC----------CCCC-C-CCCCCccEE
Q 013515 251 APGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN----------LDPK-D-PAYSEVRAI 317 (441)
Q Consensus 251 g~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~----------~~~~-~-~~~~~fD~I 317 (441)
|-|+.++.+|..+... .+|+++|+++.+++.+.. |-.. +..-+... +... + ......|++
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G~~~--i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~ 88 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----GESY--IEEPDLDEVVKEAVESGKLRATTDPEELKECDVF 88 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----Ccce--eecCcHHHHHHHHHhcCCceEecChhhcccCCEE
Confidence 5677777776665443 699999999999987643 2111 11111110 0000 0 011356888
Q ss_pred EEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEcCCCCChhcHHHHHHH
Q 013515 318 LLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVE-RVVYSTCSIHQVENEDVIKSV 396 (441)
Q Consensus 318 l~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G-~lvYsTCS~~~~ENe~vV~~~ 396 (441)
++-.|---.+ .+.||+..- ....+.....|+.| .+|+ --|.-|--.|+++..+
T Consensus 89 iI~VPTPl~~--~~~pDls~v-----------------------~~aa~sIa~~L~kG~LVIl-EST~~PGTTe~v~~pl 142 (436)
T COG0677 89 IICVPTPLKK--YREPDLSYV-----------------------ESAARSIAPVLKKGDLVIL-ESTTPPGTTEEVVKPL 142 (436)
T ss_pred EEEecCCcCC--CCCCChHHH-----------------------HHHHHHHHHhcCCCCEEEE-ecCCCCCcHHHHHHHH
Confidence 8888855444 256665211 12222333456645 5555 4567899999999999
Q ss_pred hch
Q 013515 397 LPI 399 (441)
Q Consensus 397 l~~ 399 (441)
|+.
T Consensus 143 le~ 145 (436)
T COG0677 143 LEE 145 (436)
T ss_pred Hhh
Confidence 974
No 325
>PRK06914 short chain dehydrogenase; Provisional
Probab=81.04 E-value=19 Score=34.33 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=56.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~------~~~~~ 313 (441)
+..|| +..|+|+.+..++..+. ....|++++.+++.++...+.+...+. .++.++.+|..+..... ..++.
T Consensus 3 ~k~~l-ItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAI-VTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEE-EECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 34566 44567788888876553 345899999998888877776666554 36788888887643210 11246
Q ss_pred ccEEEEcCCCCCCc
Q 013515 314 VRAILLDPSCSGSG 327 (441)
Q Consensus 314 fD~Il~DpPCSg~G 327 (441)
+|.|+..+..+..+
T Consensus 82 id~vv~~ag~~~~~ 95 (280)
T PRK06914 82 IDLLVNNAGYANGG 95 (280)
T ss_pred eeEEEECCcccccC
Confidence 79999877654433
No 326
>PRK12939 short chain dehydrogenase; Provisional
Probab=80.82 E-value=11 Score=34.99 Aligned_cols=80 Identities=11% Similarity=0.182 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.+.+|| +..|+|+.+.+++..+.. ..+|++++.+++.+..+.+.++..+ .++.++..|+.+...-. ..++
T Consensus 6 ~~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356777 556688999999887643 3588999999888887777766555 36788888987643110 1124
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.+|.|+..+-
T Consensus 84 ~id~vi~~ag 93 (250)
T PRK12939 84 GLDGLVNNAG 93 (250)
T ss_pred CCCEEEECCC
Confidence 6899988654
No 327
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=80.39 E-value=24 Score=34.83 Aligned_cols=52 Identities=15% Similarity=0.004 Sum_probs=35.3
Q ss_pred HhCCCCCCEEEEEcCCCch-HHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 236 ALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~-kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
...+++|++||=.|+|+-+ .+.++|..++ .+|++++.++++++.+ +.+|.+.
T Consensus 160 ~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a----~~~Ga~~ 212 (329)
T TIGR02822 160 RASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLA----LALGAAS 212 (329)
T ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHH----HHhCCce
Confidence 4567889999988864333 2344555542 4799999999987655 4578754
No 328
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.25 E-value=4.2 Score=35.55 Aligned_cols=73 Identities=22% Similarity=0.159 Sum_probs=55.3
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD 308 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~ 308 (441)
..++.-.+..+.+|+|+|-|..-+..++.. .-.-+++|+++-.+...+-..-+.|+ +.+.+...|..+.+..+
T Consensus 65 LSll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 65 LSLLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 345555666799999999999888777652 34678999999988888877778887 45677777877766543
No 329
>PLN02214 cinnamoyl-CoA reductase
Probab=80.00 E-value=25 Score=35.03 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHH-HHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRL-KDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l-~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.+.+||=.| |+|..+.+++..+.. ..+|++++.+....... ...+.. +...+.++.+|..+...-......+|.|+
T Consensus 9 ~~~~vlVTG-atGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTG-AGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG-GKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC-CCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 366788544 589999999876543 35899988875543221 111211 12357788899876442211124578888
Q ss_pred EcCC
Q 013515 319 LDPS 322 (441)
Q Consensus 319 ~DpP 322 (441)
.-+.
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 7664
No 330
>PRK06940 short chain dehydrogenase; Provisional
Probab=79.57 E-value=20 Score=34.31 Aligned_cols=77 Identities=13% Similarity=0.186 Sum_probs=52.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC------CCCCCCccEE
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK------DPAYSEVRAI 317 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~------~~~~~~fD~I 317 (441)
.+|=.|+ |+.+.++++.+....+|+.+|.++..++.+.+.++..|. ++.++..|+.+...- ...++.+|.+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4454443 689999998886557899999998888777666665553 567788888764311 0113568999
Q ss_pred EEcCCC
Q 013515 318 LLDPSC 323 (441)
Q Consensus 318 l~DpPC 323 (441)
+..+..
T Consensus 81 i~nAG~ 86 (275)
T PRK06940 81 VHTAGV 86 (275)
T ss_pred EECCCc
Confidence 987653
No 331
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=79.56 E-value=2 Score=40.34 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=56.5
Q ss_pred HHHHHhCCC-CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 013515 232 MVAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310 (441)
Q Consensus 232 l~~~~l~~~-~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 310 (441)
++-...+.+ ....++|+||+-|...-|+... +-++++-+|-|-.|++..+..- ..++ .+...++|-+.++..+
T Consensus 62 laDrvfD~kk~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~q-dp~i-~~~~~v~DEE~Ldf~e-- 135 (325)
T KOG2940|consen 62 LADRVFDCKKSFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQ-DPSI-ETSYFVGDEEFLDFKE-- 135 (325)
T ss_pred HHHHHHHHhhhCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhccC-CCce-EEEEEecchhcccccc--
Confidence 333444443 3568999999999999998654 3478999999999998776532 1233 2445678888877654
Q ss_pred CCCccEEE
Q 013515 311 YSEVRAIL 318 (441)
Q Consensus 311 ~~~fD~Il 318 (441)
.+||.|+
T Consensus 136 -ns~DLii 142 (325)
T KOG2940|consen 136 -NSVDLII 142 (325)
T ss_pred -cchhhhh
Confidence 6889886
No 332
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.23 E-value=16 Score=33.84 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=52.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 313 (441)
|.+||=.|+ +|+.+..+++.+. ...+|++++.+++.+..+.+.+...+ ++.++.+|..+.... ...++.
T Consensus 5 ~~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 5 GKKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 668886666 5888888887763 33589999999888877655554433 577888888764311 011245
Q ss_pred ccEEEEcCC
Q 013515 314 VRAILLDPS 322 (441)
Q Consensus 314 fD~Il~DpP 322 (441)
+|.|+..+.
T Consensus 82 id~ii~~ag 90 (238)
T PRK05786 82 IDGLVVTVG 90 (238)
T ss_pred CCEEEEcCC
Confidence 788887654
No 333
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.02 E-value=20 Score=35.58 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=33.3
Q ss_pred CCCCCCEEEEEcCCCchHH---HHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 238 APKPGWKVLDACSAPGNKT---VHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt---~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
...+|++||=.|+ |+.+ ++++..+ +..+|+++|.++++++.++ .+|.+.
T Consensus 166 ~~~~g~~VlV~G~--G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~----~lGa~~ 217 (343)
T PRK09880 166 GDLQGKRVFVSGV--GPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAR----EMGADK 217 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHH----HcCCcE
Confidence 4557999998765 4444 4445544 3347999999999988764 467653
No 334
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=78.86 E-value=3.9 Score=41.44 Aligned_cols=83 Identities=23% Similarity=0.285 Sum_probs=64.4
Q ss_pred HhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCCCc
Q 013515 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEV 314 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~~f 314 (441)
.....+|..++|++||-|+.+..++..- ...++++|.++..+.+........++++ -.++.+|+.+.+.++ ..|
T Consensus 105 ~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed---n~f 179 (364)
T KOG1269|consen 105 RESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED---NTF 179 (364)
T ss_pred hhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc---ccc
Confidence 3446788899999999999999998762 4689999999999988888888777743 233778998888776 567
Q ss_pred cEE-EEcCCC
Q 013515 315 RAI-LLDPSC 323 (441)
Q Consensus 315 D~I-l~DpPC 323 (441)
|.+ .+|.-|
T Consensus 180 d~v~~ld~~~ 189 (364)
T KOG1269|consen 180 DGVRFLEVVC 189 (364)
T ss_pred CcEEEEeecc
Confidence 766 456666
No 335
>PRK05867 short chain dehydrogenase; Provisional
Probab=78.60 E-value=15 Score=34.56 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
.|..||=.|+ +|+.+.+++..+.. ..+|+.++.+.+.++.+.+.++..| .++.++..|..+...- ...++
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3667876665 66778888776643 3589999999988888887777666 3577788888764311 01135
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.+|.++..+.
T Consensus 86 ~id~lv~~ag 95 (253)
T PRK05867 86 GIDIAVCNAG 95 (253)
T ss_pred CCCEEEECCC
Confidence 7899998764
No 336
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=78.12 E-value=3.4 Score=38.05 Aligned_cols=107 Identities=16% Similarity=0.254 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC--------CcEEEEEeCCHHHHHHHHHHH--------------HHh-----C---
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG--------KGKIVACELNKERVRRLKDTI--------------KLS-----G--- 290 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~--------~~~V~a~D~~~~rl~~l~~~~--------------~~~-----g--- 290 (441)
+.-+|+.+||++|-=+-.||-++.. ..+|+|.|+|+..++.|++-. +++ |
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 3458999999999654444433321 359999999999999876421 221 1
Q ss_pred -C-----CcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHH
Q 013515 291 -A-----ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKA 364 (441)
Q Consensus 291 -~-----~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~l 364 (441)
+ ++|++...|..+..+. .+.||+|+ |...= +- .+ .+.|.++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~---~~~fD~I~----CRNVl-------IY------------F~-------~~~~~~v 157 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPP---FGRFDLIF----CRNVL-------IY------------FD-------PETQQRV 157 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S---------EEEEE----E-SSG-------GG------------S--------HHHHHHH
T ss_pred eEChHHcCceEEEecccCCCCcc---cCCccEEE----ecCEE-------EE------------eC-------HHHHHHH
Confidence 0 2588888888872222 37899999 43321 10 11 2467889
Q ss_pred HHHHhCCCC-CcEEEEE
Q 013515 365 LRHALSFPG-VERVVYS 380 (441)
Q Consensus 365 L~~a~~~~~-~G~lvYs 380 (441)
++.....|+ ||.|+-.
T Consensus 158 l~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 158 LRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp HHHHGGGEEEEEEEEE-
T ss_pred HHHHHHHcCCCCEEEEe
Confidence 999888777 6777654
No 337
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=77.90 E-value=2.6 Score=40.86 Aligned_cols=65 Identities=25% Similarity=0.256 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
.|..++|.|||-|--+. ..+...++++|++..-+..++ +-|.+ .+..+|+..++... .+||.++.
T Consensus 45 ~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak----~~~~~--~~~~ad~l~~p~~~---~s~d~~ls 109 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAK----RSGGD--NVCRADALKLPFRE---ESFDAALS 109 (293)
T ss_pred CcceeeecccCCcccCc-----CCCcceeeecchhhhhccccc----cCCCc--eeehhhhhcCCCCC---Cccccchh
Confidence 48899999999995332 113356889999877665443 23332 56778999988775 67888753
No 338
>PRK11524 putative methyltransferase; Provisional
Probab=77.85 E-value=3.4 Score=40.32 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=41.8
Q ss_pred cEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 013515 293 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFP 372 (441)
Q Consensus 293 ~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~ 372 (441)
+.+++++|..+.....+ .++||.|++|||.-. |.-..... +.+.. ......-...+..+.++|
T Consensus 8 ~~~i~~gD~~~~l~~l~-~~siDlIitDPPY~~-~~~~~~~~------------~~~~~---~~~~~~l~~~l~~~~rvL 70 (284)
T PRK11524 8 AKTIIHGDALTELKKIP-SESVDLIFADPPYNI-GKNFDGLI------------EAWKE---DLFIDWLYEWIDECHRVL 70 (284)
T ss_pred CCEEEeccHHHHHHhcc-cCcccEEEECCCccc-cccccccc------------ccccH---HHHHHHHHHHHHHHHHHh
Confidence 45688899887543221 268999999999842 21000000 01111 223333567888888888
Q ss_pred C-CcEEEEEcCCC
Q 013515 373 G-VERVVYSTCSI 384 (441)
Q Consensus 373 ~-~G~lvYsTCS~ 384 (441)
+ +|.++. -|+.
T Consensus 71 K~~G~i~i-~~~~ 82 (284)
T PRK11524 71 KKQGTMYI-MNST 82 (284)
T ss_pred CCCcEEEE-EcCc
Confidence 8 565543 3553
No 339
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=77.76 E-value=7.6 Score=39.20 Aligned_cols=52 Identities=19% Similarity=0.066 Sum_probs=38.6
Q ss_pred hHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHH
Q 013515 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283 (441)
Q Consensus 230 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~ 283 (441)
+-++..+.+-.+-+.|.|+|+|.|+.+..|+-. .+-.|+|+|-+....++++
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~--y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG--YGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc--cCceEEEeccchHHHHHHH
Confidence 455555656566789999999999999888654 4579999999965554443
No 340
>PRK06196 oxidoreductase; Provisional
Probab=77.73 E-value=22 Score=34.84 Aligned_cols=77 Identities=9% Similarity=0.108 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
.|.+||=.| |+|+.+.+++..+.. ..+|+.++.+++.++.+.+.+. .+.++.+|+.+...- ...++
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 356777555 678899998886643 3589999999887766554442 356778888765411 01135
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.|+..+..
T Consensus 99 ~iD~li~nAg~ 109 (315)
T PRK06196 99 RIDILINNAGV 109 (315)
T ss_pred CCCEEEECCCC
Confidence 68999998764
No 341
>PRK07109 short chain dehydrogenase; Provisional
Probab=77.50 E-value=35 Score=33.92 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.+..|| +..|+|+.+..+++.+. ...+|+.++.+++.++.+.+.++..|. ++.++..|+.+...-. ..++
T Consensus 7 ~~k~vl-ITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVV-ITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 355666 44567888888877663 335899999999999888888877774 5777888887643210 1235
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.++.++..
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 78999987654
No 342
>PLN02427 UDP-apiose/xylose synthase
Probab=77.35 E-value=13 Score=37.55 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=47.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC--cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~--~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
..+|| +.-|+|..+.++++.+... .+|+++|.+......+.......-..+++++.+|..+...-......+|.|+-
T Consensus 14 ~~~Vl-VTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViH 92 (386)
T PLN02427 14 PLTIC-MIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTIN 92 (386)
T ss_pred CcEEE-EECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEE
Confidence 45788 7778999999998877543 48999998765544322110000013688999998764321111235788876
Q ss_pred c
Q 013515 320 D 320 (441)
Q Consensus 320 D 320 (441)
=
T Consensus 93 l 93 (386)
T PLN02427 93 L 93 (386)
T ss_pred c
Confidence 3
No 343
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=77.21 E-value=20 Score=33.26 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=54.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+..||=.| |+|+.+.+++..+... .+|+.++.+......+...+...+ .++.++.+|..+..... ..+..
T Consensus 3 ~~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 3 DKTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 55677555 5788888888766433 489999999888887777776654 35778888887643110 01245
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
.|.|+..+...
T Consensus 81 ~d~vi~~ag~~ 91 (250)
T TIGR03206 81 VDVLVNNAGWD 91 (250)
T ss_pred CCEEEECCCCC
Confidence 79998876543
No 344
>PRK06197 short chain dehydrogenase; Provisional
Probab=76.99 E-value=38 Score=32.92 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPK-------DPAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~-g~~~v~~~~~D~~~~~~~-------~~~~ 311 (441)
.|.+|| +..|+|+.+.+++..+.. ..+|+.++.+.+..+.+.+.+... +-.++.++..|+.+...- ...+
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 466777 566788999999886643 358889999988877666655543 223577888888765411 0113
Q ss_pred CCccEEEEcCC
Q 013515 312 SEVRAILLDPS 322 (441)
Q Consensus 312 ~~fD~Il~DpP 322 (441)
+.+|.|+..+.
T Consensus 94 ~~iD~li~nAg 104 (306)
T PRK06197 94 PRIDLLINNAG 104 (306)
T ss_pred CCCCEEEECCc
Confidence 56899998764
No 345
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=76.82 E-value=14 Score=36.75 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeC---CHHHHHHHHHHHHHhCCC
Q 013515 239 PKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACEL---NKERVRRLKDTIKLSGAA 292 (441)
Q Consensus 239 ~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~---~~~rl~~l~~~~~~~g~~ 292 (441)
.++|++||=.|+|+ |..+.++++.++ .+|++++. ++.+++.+ +.+|.+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~----~~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIV----EELGAT 221 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHH----HHcCCE
Confidence 46899999887653 333455555543 37999987 67777755 456764
No 346
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.36 E-value=55 Score=31.35 Aligned_cols=119 Identities=17% Similarity=0.133 Sum_probs=74.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHH------HHHHHHH---HHHhCCCcEEEEeccCCCCCCC-CCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKER------VRRLKDT---IKLSGAANIEVLHGDFLNLDPK-DPA 310 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~r------l~~l~~~---~~~~g~~~v~~~~~D~~~~~~~-~~~ 310 (441)
..+||-+|=|-=.++..|+...+ .++.|+|...+..- .-.++.| ++++|+. .+...|+..+... +-.
T Consensus 57 ~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~--I~h~Vdv~sl~~~~~~~ 134 (282)
T KOG4174|consen 57 KQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT--ILHGVDVTSLKFHADLR 134 (282)
T ss_pred cccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc--eEecccceeEEeccccc
Confidence 45788777777777777887776 55677776665433 2223333 4566763 2344566655531 112
Q ss_pred CCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-C-cEEEE
Q 013515 311 YSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-V-ERVVY 379 (441)
Q Consensus 311 ~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~-G~lvY 379 (441)
.+.||.|+.+-|-+|.|.. ..- .+--+....++-+..|+.|-.+++ . |.|+-
T Consensus 135 ~~~~d~IiFNFPH~G~g~~-~e~----------------d~~~i~~~qkL~rgFle~akemL~~edGeI~i 188 (282)
T KOG4174|consen 135 LQRYDNIIFNFPHSGKGIK-FEQ----------------DRNIIPLHQKLFRGFLESAKEMLKDEDGEIHI 188 (282)
T ss_pred ccccceEEEcCCCCCCCcc-ccc----------------chHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 4689999999999999964 111 122233456677788888888887 3 65444
No 347
>PRK07831 short chain dehydrogenase; Provisional
Probab=76.11 E-value=25 Score=33.11 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEeccCCCCCCCC-------CCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKL-SGAANIEVLHGDFLNLDPKD-------PAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~-~g~~~v~~~~~D~~~~~~~~-------~~~ 311 (441)
.+.++|=.|++.++.+..++..+. ....|+.+|.++..++...+.++. .|..++.++..|..+...-. ..+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 95 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERL 95 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356777666542367777766553 235799999999888877777665 45446778888887643110 112
Q ss_pred CCccEEEEcCC
Q 013515 312 SEVRAILLDPS 322 (441)
Q Consensus 312 ~~fD~Il~DpP 322 (441)
+.+|.++..+.
T Consensus 96 g~id~li~~ag 106 (262)
T PRK07831 96 GRLDVLVNNAG 106 (262)
T ss_pred CCCCEEEECCC
Confidence 56899988665
No 348
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.00 E-value=20 Score=33.38 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=53.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+.+|| +..|+|+.+.+++..+. ...+|++++.++..+..+...+.. + .++.++.+|..+...-. ..+..
T Consensus 5 ~~~vl-ItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 5 GKVAI-VTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred CcEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 45666 45567888888877654 235899999999888777666554 3 34778888887644211 11246
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.|+..+...
T Consensus 82 ~d~vi~~ag~~ 92 (251)
T PRK07231 82 VDILVNNAGTT 92 (251)
T ss_pred CCEEEECCCCC
Confidence 89999877543
No 349
>PRK13699 putative methylase; Provisional
Probab=75.93 E-value=2.1 Score=40.35 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=41.7
Q ss_pred EEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC
Q 013515 295 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV 374 (441)
Q Consensus 295 ~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~ 374 (441)
+++++|..++....+ .+++|.|+.|||.- .|.-.+. +- .... ....+.....+..+.+.++.
T Consensus 3 ~l~~gD~le~l~~lp-d~SVDLIiTDPPY~-i~~~~~~-~~------------~~~~---~~~~ew~~~~l~E~~RVLKp 64 (227)
T PRK13699 3 RFILGNCIDVMARFP-DNAVDFILTDPPYL-VGFRDRQ-GR------------TIAG---DKTDEWLQPACNEMYRVLKK 64 (227)
T ss_pred eEEechHHHHHHhCC-ccccceEEeCCCcc-cccccCC-Cc------------cccc---ccHHHHHHHHHHHHHHHcCC
Confidence 577888877643322 27899999999984 2321100 00 0000 11223345778888888886
Q ss_pred cEEEEEcCCCC
Q 013515 375 ERVVYSTCSIH 385 (441)
Q Consensus 375 G~lvYsTCS~~ 385 (441)
|..+|+-|+.+
T Consensus 65 gg~l~if~~~~ 75 (227)
T PRK13699 65 DALMVSFYGWN 75 (227)
T ss_pred CCEEEEEeccc
Confidence 55556667654
No 350
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=75.55 E-value=31 Score=32.27 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
.|.+||=.| |+|+.+..+++.+. ...+|+.++.++..++.+.+.++..|. ++..+..|..+...- ...++
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 366788555 68888998887664 345899999999888877777776553 467778888764311 01134
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.|+..+..
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 67999886643
No 351
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=75.22 E-value=8.2 Score=39.17 Aligned_cols=50 Identities=22% Similarity=0.231 Sum_probs=39.4
Q ss_pred HHhCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHH
Q 013515 235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285 (441)
Q Consensus 235 ~~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~ 285 (441)
....+.+|++||..++|+ |..+.++++..+ ...|+++|.++++++.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 455677899999998877 667777888753 34699999999998887764
No 352
>PRK12937 short chain dehydrogenase; Provisional
Probab=74.93 E-value=18 Score=33.60 Aligned_cols=79 Identities=9% Similarity=0.118 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACEL-NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~-~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
+..|| +..|+|+.+.+++..+... .+|+.+.. ++...+.+.+.+...+ .++.++..|+.+...-. ..++
T Consensus 5 ~~~vl-ItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 5 NKVAI-VTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAG-GRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45566 4555788999998876433 35665554 3455555666666555 35778888887643110 1124
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
..|.|+..+.
T Consensus 83 ~id~vi~~ag 92 (245)
T PRK12937 83 RIDVLVNNAG 92 (245)
T ss_pred CCCEEEECCC
Confidence 6799998664
No 353
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=74.84 E-value=3.6 Score=39.27 Aligned_cols=69 Identities=25% Similarity=0.418 Sum_probs=36.7
Q ss_pred EcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-----CCCCCCCCCCccEEEEcCC
Q 013515 248 ACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-----LDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 248 l~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~-----~~~~~~~~~~fD~Il~DpP 322 (441)
+...||+=.+ ++.++....+++.+|+++.-.+.+++++... .+|.+.+.|... +++. .+=-.||+|||
T Consensus 62 l~~YPGSP~i-a~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~DG~~~l~allPP~----~rRglVLIDPp 134 (245)
T PF04378_consen 62 LRFYPGSPAI-AARLLREQDRLVLFELHPQDFEALKKNFRRD--RRVRVHHRDGYEGLKALLPPP----ERRGLVLIDPP 134 (245)
T ss_dssp --EEE-HHHH-HHHHS-TTSEEEEE--SHHHHHHHTTS--TT--S-EEEE-S-HHHHHHHH-S-T----TS-EEEEE---
T ss_pred cCcCCCCHHH-HHHhCCccceEEEEecCchHHHHHHHHhccC--CccEEEeCchhhhhhhhCCCC----CCCeEEEECCC
Confidence 3455664333 3344566789999999999999999998753 579999999865 2332 23358999999
Q ss_pred C
Q 013515 323 C 323 (441)
Q Consensus 323 C 323 (441)
.
T Consensus 135 Y 135 (245)
T PF04378_consen 135 Y 135 (245)
T ss_dssp -
T ss_pred C
Confidence 5
No 354
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=74.69 E-value=28 Score=36.12 Aligned_cols=115 Identities=14% Similarity=0.146 Sum_probs=66.8
Q ss_pred CCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHH-----------HHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 250 SAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-----------KLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 250 ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~-----------~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
-|.|..++.+|..+.....|+++|+++++++.+++.. ...| ++.+. .+... ....|+|+
T Consensus 12 IGlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g--~l~~t-~~~~~-------~~~advvi 81 (425)
T PRK15182 12 IGLGYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR--YLKFT-SEIEK-------IKECNFYI 81 (425)
T ss_pred ECcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC--CeeEE-eCHHH-------HcCCCEEE
Confidence 4778888888877765579999999999999876221 1111 11111 11110 14568898
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCCCChhcHHHHHHHhc
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLP 398 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS~~~~ENe~vV~~~l~ 398 (441)
+-.|-.--. ...+| +..+...-..+ ...++.|.+|-...|+.|...++++...++
T Consensus 82 i~Vptp~~~--~~~~d-------------------l~~v~~a~~~i----~~~l~~g~lVI~~STv~pgtt~~~~~~~l~ 136 (425)
T PRK15182 82 ITVPTPINT--YKQPD-------------------LTPLIKASETV----GTVLNRGDIVVYESTVYPGCTEEECVPILA 136 (425)
T ss_pred EEcCCCCCC--CCCcc-------------------hHHHHHHHHHH----HHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence 877732110 00111 12221111222 233455666666789999999999998886
Q ss_pred h
Q 013515 399 I 399 (441)
Q Consensus 399 ~ 399 (441)
+
T Consensus 137 ~ 137 (425)
T PRK15182 137 R 137 (425)
T ss_pred h
Confidence 4
No 355
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=74.63 E-value=38 Score=32.00 Aligned_cols=82 Identities=13% Similarity=0.063 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
.+.++|=.|+ +|+.+.+++..+. ...+|+.++.+++.++.+.+.++..|. ++.++..|..+.... ...++
T Consensus 9 ~~k~~lItGa-~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGA-SYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 3556775555 4667777766543 346898999999888888887776654 577788888764321 01135
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.++..+...
T Consensus 87 ~id~li~~ag~~ 98 (265)
T PRK07097 87 VIDILVNNAGII 98 (265)
T ss_pred CCCEEEECCCCC
Confidence 689999876643
No 356
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=74.30 E-value=2.8 Score=34.41 Aligned_cols=66 Identities=23% Similarity=0.390 Sum_probs=46.1
Q ss_pred CCCchHHHHHHHHhcCCc-EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCCCccEEEEcCC
Q 013515 250 SAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVRAILLDPS 322 (441)
Q Consensus 250 ag~G~kt~~la~~~~~~~-~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~-~~~~~~~fD~Il~DpP 322 (441)
||.|..+..+++.+...+ .|+.+|.+++.++.+++ .| +.++.+|+.+... ......+.|.|++.-+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~---~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG---VEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT---SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc---cccccccchhhhHHhhcCccccCEEEEccC
Confidence 677888999888776666 89999999999877654 34 4588899987541 1112357888887655
No 357
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=74.24 E-value=9.5 Score=38.93 Aligned_cols=64 Identities=28% Similarity=0.314 Sum_probs=44.7
Q ss_pred Cccccc-chhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHH
Q 013515 221 GCVFLQ-GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 287 (441)
Q Consensus 221 g~~~~Q-d~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~ 287 (441)
+++|-| .+....-..+|++.|+++||-+++|-.+ ++.+ +..+..+|+|||+++.-+..++=.+.
T Consensus 14 ~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSaG~N-~L~y--L~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 14 GLVYAQCWEDPRVDMEALNIGPDDRVLTITSAGCN-ALDY--LLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred ceeeccccCCcHHHHHHhCCCCCCeEEEEccCCch-HHHH--HhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 444444 2445566678999999999999876555 4444 23345899999999988877764444
No 358
>PRK09186 flagellin modification protein A; Provisional
Probab=73.88 E-value=18 Score=33.90 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=52.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKL-SGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~-~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+||= ..|+|+.+.+++..+.. ..+|+.++.+++.++.+.+.+.. .+-..+.++.+|+.+...-. ..++
T Consensus 4 ~k~vlI-tGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 4 GKTILI-TGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCEEEE-ECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 556774 44578889998887643 35899999998888777666643 23345667788887643110 1124
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.+|.|+..+.
T Consensus 83 ~id~vi~~A~ 92 (256)
T PRK09186 83 KIDGAVNCAY 92 (256)
T ss_pred CccEEEECCc
Confidence 5899998763
No 359
>PRK07062 short chain dehydrogenase; Provisional
Probab=73.85 E-value=48 Score=31.19 Aligned_cols=81 Identities=11% Similarity=0.176 Sum_probs=54.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
|..+|=.| |+|+.+.+++..+. ...+|+.++.+++.++.+.+.+..... .++.++..|+.+...- ...++
T Consensus 8 ~k~~lItG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 8 GRVAVVTG-GSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 56777555 56777888877663 346899999999888877766655422 3577788888765321 01235
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.++..+..
T Consensus 87 ~id~li~~Ag~ 97 (265)
T PRK07062 87 GVDMLVNNAGQ 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68999886643
No 360
>PRK07832 short chain dehydrogenase; Provisional
Probab=72.72 E-value=27 Score=33.27 Aligned_cols=75 Identities=9% Similarity=0.044 Sum_probs=48.3
Q ss_pred EcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCCccEEEE
Q 013515 248 ACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEVRAILL 319 (441)
Q Consensus 248 l~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~fD~Il~ 319 (441)
+..|+|+.+..+++.+. ....|+.++.+++.++.+.+.+...+...+.++..|..+.... ...++.+|.|+.
T Consensus 5 ItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~ 84 (272)
T PRK07832 5 VTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDVVMN 84 (272)
T ss_pred EeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 34567888888877553 2357888999988887777777665544455567787653310 011246799987
Q ss_pred cCC
Q 013515 320 DPS 322 (441)
Q Consensus 320 DpP 322 (441)
.+.
T Consensus 85 ~ag 87 (272)
T PRK07832 85 IAG 87 (272)
T ss_pred CCC
Confidence 654
No 361
>PRK09242 tropinone reductase; Provisional
Probab=72.62 E-value=60 Score=30.34 Aligned_cols=80 Identities=8% Similarity=0.121 Sum_probs=53.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g-~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
|.++|=.|+ +|+.+..++..+. ...+|+.++.+.+.++.+...+.... -.++.++..|+.+.... ...++
T Consensus 9 ~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 567776555 6777888777654 23689999999888887777776541 13577888888764310 01235
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.+|.|+..+.
T Consensus 88 ~id~li~~ag 97 (257)
T PRK09242 88 GLHILVNNAG 97 (257)
T ss_pred CCCEEEECCC
Confidence 7899988654
No 362
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=72.56 E-value=19 Score=35.13 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=35.3
Q ss_pred hCCCCCCEEEEEcCC-CchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 013515 237 LAPKPGWKVLDACSA-PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293 (441)
Q Consensus 237 l~~~~g~~VLDl~ag-~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~ 293 (441)
..+.+|++||..++| .|..+.+++...+ .+|++++.++++.+.+++ .|++.
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~~~ 212 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGADE 212 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCCE
Confidence 346789999987654 2556666676653 579999999988776643 56643
No 363
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=72.36 E-value=36 Score=31.26 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=52.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 313 (441)
+.+||=.| |+|+.+.+++..+. ...+|+.++.++...+.....++..+. ++.++..|..+.... ...+..
T Consensus 5 ~~~ilItG-asg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 5 GKTALVTG-ASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGG-EARVLVFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 45777444 58999999887653 234799999998888777776666554 467777888754311 011245
Q ss_pred ccEEEEcCC
Q 013515 314 VRAILLDPS 322 (441)
Q Consensus 314 fD~Il~DpP 322 (441)
+|.|+.-+.
T Consensus 83 id~vi~~ag 91 (246)
T PRK05653 83 LDILVNNAG 91 (246)
T ss_pred CCEEEECCC
Confidence 798887654
No 364
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=72.20 E-value=23 Score=35.19 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=46.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC--CCCccEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA--YSEVRAIL 318 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~--~~~fD~Il 318 (441)
|.+||= ..|+|+.+.+++..+.. ..+|++++.++.......+.+. .+ .++.++.+|..+...-... ...+|.|+
T Consensus 4 ~k~ilI-tGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 80 (349)
T TIGR02622 4 GKKVLV-TGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN-LA-KKIEDHFGDIRDAAKLRKAIAEFKPEIVF 80 (349)
T ss_pred CCEEEE-ECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh-hc-CCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence 567774 45788999999887643 3589999987654332222221 11 2466778888764321100 02468888
Q ss_pred EcCC
Q 013515 319 LDPS 322 (441)
Q Consensus 319 ~DpP 322 (441)
.-+.
T Consensus 81 h~A~ 84 (349)
T TIGR02622 81 HLAA 84 (349)
T ss_pred ECCc
Confidence 7554
No 365
>PTZ00357 methyltransferase; Provisional
Probab=72.20 E-value=17 Score=39.67 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=48.5
Q ss_pred EEEEEcCCCchHH---HHHHHHhcCCcEEEEEeCCHHHHHHHHHHH---HHhCC------CcEEEEeccCCCCCCCC---
Q 013515 244 KVLDACSAPGNKT---VHLAALMKGKGKIVACELNKERVRRLKDTI---KLSGA------ANIEVLHGDFLNLDPKD--- 308 (441)
Q Consensus 244 ~VLDl~ag~G~kt---~~la~~~~~~~~V~a~D~~~~rl~~l~~~~---~~~g~------~~v~~~~~D~~~~~~~~--- 308 (441)
.|+=+|||-|-.- +..++..+-..+|+|+|.++..+.....+. +...- ..|+++..|.+.+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5888999999874 444444444578999999966443333332 22210 24899999999986331
Q ss_pred -----CCCCCccEEEE
Q 013515 309 -----PAYSEVRAILL 319 (441)
Q Consensus 309 -----~~~~~fD~Il~ 319 (441)
..++++|+|+.
T Consensus 783 s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS 798 (1072)
T ss_pred cccccccccccceehH
Confidence 11246788864
No 366
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=71.92 E-value=32 Score=32.24 Aligned_cols=80 Identities=10% Similarity=0.118 Sum_probs=51.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~-g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
+..||=.| |+|+.+.+++..+. ...+|+.+|.+...++.+.+.+... +-.++.++..|..+...- ...++
T Consensus 2 ~k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 34677666 56888888877664 3358999999988777666555432 223577888888763311 01135
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
..|.|+..+.
T Consensus 81 ~id~vv~~ag 90 (259)
T PRK12384 81 RVDLLVYNAG 90 (259)
T ss_pred CCCEEEECCC
Confidence 6799988764
No 367
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=71.77 E-value=10 Score=36.83 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=39.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC
Q 013515 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290 (441)
Q Consensus 239 ~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g 290 (441)
-.+|+.|||-.+|+|....... .++ ...+++|+++.-++.+.+++...-
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~-~~~--r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAK-NLG--RRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHH-HcC--CceEEEecCHHHHHHHHHHHHhhc
Confidence 4689999999999998665444 332 478899999999999999888653
No 368
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=71.49 E-value=21 Score=35.31 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=32.8
Q ss_pred HhCCCCCCEEEEEcCCCch-HHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 013515 236 ALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (441)
Q Consensus 236 ~l~~~~g~~VLDl~ag~G~-kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~ 292 (441)
.....+|++||=.|+|+=| .+.++|..+ +...|++++.++++++.++ .+|.+
T Consensus 155 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~----~~Ga~ 207 (347)
T PRK10309 155 LAQGCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAK----SLGAM 207 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHH----HcCCc
Confidence 3456789999988653322 234455554 3345899999999887653 45754
No 369
>PRK06139 short chain dehydrogenase; Provisional
Probab=71.26 E-value=40 Score=33.48 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.+..|| +..|+|+.+..++..+. ...+|+.++.+++.++.+.+.++..|. .+.++..|..+...-. ..++
T Consensus 6 ~~k~vl-ITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVV-ITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEE-EcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 355666 55667888888887653 346899999999999988888887775 4667778887533110 1125
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.++.++...
T Consensus 84 ~iD~lVnnAG~~ 95 (330)
T PRK06139 84 RIDVWVNNVGVG 95 (330)
T ss_pred CCCEEEECCCcC
Confidence 689999876543
No 370
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=70.92 E-value=23 Score=35.27 Aligned_cols=81 Identities=12% Similarity=0.056 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHH-HHHHHHHHh---CCCcEEEEeccCCCCCCCCCCCCCccE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVR-RLKDTIKLS---GAANIEVLHGDFLNLDPKDPAYSEVRA 316 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~-~l~~~~~~~---g~~~v~~~~~D~~~~~~~~~~~~~fD~ 316 (441)
+.+|| +..|+|..+.+++..+... -+|+++|....... ......... ...++.++.+|..+...-......+|.
T Consensus 15 ~~~vl-VtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d~ 93 (348)
T PRK15181 15 PKRWL-ITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVDY 93 (348)
T ss_pred CCEEE-EECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCCE
Confidence 46777 5667999999998877433 48999998543221 111111111 124578888999864321111245788
Q ss_pred EEEcCCC
Q 013515 317 ILLDPSC 323 (441)
Q Consensus 317 Il~DpPC 323 (441)
|+-=+-.
T Consensus 94 ViHlAa~ 100 (348)
T PRK15181 94 VLHQAAL 100 (348)
T ss_pred EEECccc
Confidence 8875544
No 371
>PRK08643 acetoin reductase; Validated
Probab=70.68 E-value=39 Score=31.58 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=53.5
Q ss_pred CEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCCc
Q 013515 243 WKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEV 314 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~f 314 (441)
..+| +..|+|+.+.++++.+.. ..+|+.++.++..++.+...+...+. ++.++..|+.+...- ...++++
T Consensus 3 k~~l-ItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 3 KVAL-VTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG-KAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4555 556778888888877643 35899999999888888777776653 577788888764311 0113568
Q ss_pred cEEEEcC
Q 013515 315 RAILLDP 321 (441)
Q Consensus 315 D~Il~Dp 321 (441)
|.++..+
T Consensus 81 d~vi~~a 87 (256)
T PRK08643 81 NVVVNNA 87 (256)
T ss_pred CEEEECC
Confidence 9998865
No 372
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.62 E-value=33 Score=31.75 Aligned_cols=80 Identities=10% Similarity=0.140 Sum_probs=54.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 313 (441)
+..||=.| |+|+.+.+++..+ ....+|+.++.++..++...+.++..+ .++.++..|..+...- ...++.
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 55677666 5888999888765 334689999999888777766666555 3677888888764421 011246
Q ss_pred ccEEEEcCCC
Q 013515 314 VRAILLDPSC 323 (441)
Q Consensus 314 fD~Il~DpPC 323 (441)
+|.|+..+..
T Consensus 85 id~vi~~ag~ 94 (239)
T PRK07666 85 IDILINNAGI 94 (239)
T ss_pred ccEEEEcCcc
Confidence 8999987654
No 373
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.41 E-value=45 Score=31.48 Aligned_cols=80 Identities=11% Similarity=-0.016 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAP-GNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~-G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 311 (441)
.|..||=.|+++ +|.+..++..+. ...+|+.++.+.+..+.+++..+..+ .+.++..|+.+...- ...+
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 377899899888 488888887663 23578888888655444444444333 234667787654311 0123
Q ss_pred CCccEEEEcCC
Q 013515 312 SEVRAILLDPS 322 (441)
Q Consensus 312 ~~fD~Il~DpP 322 (441)
+.+|.++.++.
T Consensus 87 g~ld~lv~nAg 97 (258)
T PRK07533 87 GRLDFLLHSIA 97 (258)
T ss_pred CCCCEEEEcCc
Confidence 67899998764
No 374
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.31 E-value=25 Score=32.48 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=53.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEE-eCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVAC-ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~-D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
+.++|= ..|+|+.+.+++..+. ...+|+.+ +.++..++.+.+.+...+ .++.++..|+.+...-. ..++
T Consensus 5 ~~~ilI-~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 5 GKVAIV-TGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG-GDAIAVKADVSSEEDVENLVEQIVEKFG 82 (247)
T ss_pred CCEEEE-eCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 345664 4467889998887653 23578888 998888877777766544 35788888987654210 0123
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.|+..+...
T Consensus 83 ~id~vi~~ag~~ 94 (247)
T PRK05565 83 KIDILVNNAGIS 94 (247)
T ss_pred CCCEEEECCCcC
Confidence 689999876543
No 375
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=70.31 E-value=4.8 Score=39.59 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=50.5
Q ss_pred EEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC----CCCCCCccEEEEc
Q 013515 246 LDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK----DPAYSEVRAILLD 320 (441)
Q Consensus 246 LDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~----~~~~~~fD~Il~D 320 (441)
+|+|.|.--.--.+...+.+ -.-+|.|++...+..+++|+.+++. +.|.+++....+.... ......||.++++
T Consensus 107 iDIgtgasci~~llg~rq~n-~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNN-WYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchhcc-ceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 67765544322223223223 5778999999999999999999987 4566666543222111 1111459999999
Q ss_pred CCCCCC
Q 013515 321 PSCSGS 326 (441)
Q Consensus 321 pPCSg~ 326 (441)
||-.-.
T Consensus 186 PPFfe~ 191 (419)
T KOG2912|consen 186 PPFFEN 191 (419)
T ss_pred Cchhhc
Confidence 997544
No 376
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=69.91 E-value=6.7 Score=31.60 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=33.5
Q ss_pred EcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcC
Q 013515 248 ACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321 (441)
Q Consensus 248 l~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~Dp 321 (441)
+|||.|.-|..++.. +++.++..|++ +.+...+..++... ...+|.||+-|
T Consensus 4 ~~Cg~G~sTS~~~~k-------------------i~~~~~~~~~~-~~v~~~~~~~~~~~---~~~~Diil~~P 54 (96)
T cd05564 4 LVCSAGMSTSILVKK-------------------MKKAAEKRGID-AEIEAVPESELEEY---IDDADVVLLGP 54 (96)
T ss_pred EEcCCCchHHHHHHH-------------------HHHHHHHCCCc-eEEEEecHHHHHHh---cCCCCEEEECh
Confidence 688888877655443 36667778874 67777776665422 25689887633
No 377
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=69.91 E-value=9 Score=35.81 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=51.6
Q ss_pred HHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 013515 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (441)
Q Consensus 233 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~ 305 (441)
++...+.-..+.|+++|-||||.|-.+... +..++..+|++...+.-++...+... ....+.++|+..+.
T Consensus 42 IvK~A~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 42 IVKKAGNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRFK 111 (326)
T ss_pred HHHhccccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCC-cceEEeccccceeh
Confidence 334444445789999999999999988764 34688889999988888877766443 35667778876544
No 378
>PLN02583 cinnamoyl-CoA reductase
Probab=69.78 E-value=48 Score=32.14 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=42.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhC--CCcEEEEeccCCCCCCCCCCCCCccEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSG--AANIEVLHGDFLNLDPKDPAYSEVRAI 317 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g--~~~v~~~~~D~~~~~~~~~~~~~fD~I 317 (441)
++.+|| +..|+|+.+.+++..+- ...+|+++..+....+. .+.+.... -.+++++.+|..+...-......+|.|
T Consensus 5 ~~k~vl-VTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~-~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v 82 (297)
T PLN02583 5 SSKSVC-VMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEI-EKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGL 82 (297)
T ss_pred CCCEEE-EECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhH-HHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEE
Confidence 355677 55668999999887654 33588888764322111 11122211 135778888887643211112346766
Q ss_pred E
Q 013515 318 L 318 (441)
Q Consensus 318 l 318 (441)
+
T Consensus 83 ~ 83 (297)
T PLN02583 83 F 83 (297)
T ss_pred E
Confidence 5
No 379
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=69.31 E-value=7.5 Score=31.30 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=35.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
+|| ++||.|.-|..++.. +++.++..|++ +++...+..++.... ..+|+||+-|.
T Consensus 5 ~IL-l~C~~G~sSS~l~~k-------------------~~~~~~~~gi~-~~v~a~~~~~~~~~~---~~~Dvill~pq 59 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVNK-------------------MNKAAEEYGVP-VKIAAGSYGAAGEKL---DDADVVLLAPQ 59 (95)
T ss_pred EEE-EECCCchhHHHHHHH-------------------HHHHHHHCCCc-EEEEEecHHHHHhhc---CCCCEEEECch
Confidence 566 788888776655543 35556777874 666666665554332 45799988665
No 380
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=69.12 E-value=77 Score=29.41 Aligned_cols=78 Identities=10% Similarity=0.126 Sum_probs=52.2
Q ss_pred cCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCCccEEEEc
Q 013515 249 CSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEVRAILLD 320 (441)
Q Consensus 249 ~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~fD~Il~D 320 (441)
..|+|+.+.++++.+. ...+|+.++.++..++.+.+.+...|. ++.++..|..+...- ...+...|.|+..
T Consensus 6 tG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ 84 (254)
T TIGR02415 6 TGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSDKDQVFSAIDQAAEKFGGFDVMVNN 84 (254)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3467888888877653 335899999998888777776666553 577888888764311 0112457999987
Q ss_pred CCCCCCc
Q 013515 321 PSCSGSG 327 (441)
Q Consensus 321 pPCSg~G 327 (441)
+.....+
T Consensus 85 ag~~~~~ 91 (254)
T TIGR02415 85 AGVAPIT 91 (254)
T ss_pred CCcCCCC
Confidence 7654433
No 381
>PRK05717 oxidoreductase; Validated
Probab=68.75 E-value=30 Score=32.44 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=50.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 313 (441)
|.+|| +..|+|+.+.+++..+.. ..+|+.+|.++.....+.+ ..+ .++.++..|..+.... ...+++
T Consensus 10 ~k~vl-ItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~---~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 84 (255)
T PRK05717 10 GRVAL-VTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAK---ALG-ENAWFIAMDVADEAQVAAGVAEVLGQFGR 84 (255)
T ss_pred CCEEE-EeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---HcC-CceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 56777 445568889998887743 3589999988776554433 233 3567888888764311 011246
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.|+..+...
T Consensus 85 id~li~~ag~~ 95 (255)
T PRK05717 85 LDALVCNAAIA 95 (255)
T ss_pred CCEEEECCCcc
Confidence 89999987643
No 382
>PRK07677 short chain dehydrogenase; Provisional
Probab=68.69 E-value=52 Score=30.72 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=52.4
Q ss_pred CEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCCc
Q 013515 243 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEV 314 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~f 314 (441)
.++|=. .|+|+.+.+++..+. ...+|+.++.++..++.+.+.++..+ .++.++..|..+...- ...++.+
T Consensus 2 k~~lIt-G~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIIT-GGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEe-CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 456644 456677877776653 23589999999888888777776555 4677888888653211 0112568
Q ss_pred cEEEEcCCC
Q 013515 315 RAILLDPSC 323 (441)
Q Consensus 315 D~Il~DpPC 323 (441)
|.|+..+..
T Consensus 80 d~lI~~ag~ 88 (252)
T PRK07677 80 DALINNAAG 88 (252)
T ss_pred cEEEECCCC
Confidence 999987654
No 383
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.98 E-value=52 Score=31.55 Aligned_cols=79 Identities=15% Similarity=0.058 Sum_probs=49.4
Q ss_pred CCEEEEEcCCC-chHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAP-GNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~-G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
|..||=.|+++ +|.+..++..+.. ..+|+.++.+.+..+.+.+..+.++.. .++..|+.+...- ...++
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~i~~~~g 82 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSKPEHFKSLAESLKKDLG 82 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 66788778764 6888888876643 358888888854333444444444533 4567788765421 01246
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
++|.++.++.
T Consensus 83 ~iDilVnnAG 92 (274)
T PRK08415 83 KIDFIVHSVA 92 (274)
T ss_pred CCCEEEECCc
Confidence 7899988764
No 384
>PRK06500 short chain dehydrogenase; Provisional
Probab=67.66 E-value=42 Score=31.05 Aligned_cols=77 Identities=10% Similarity=0.188 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 313 (441)
|.+|| +..|+|+.+.++++.+.. ..+|+.++.+...++.+.+ ..|. ++.++..|..+.... ...++.
T Consensus 6 ~k~vl-ItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~---~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (249)
T PRK06500 6 GKTAL-ITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARA---ELGE-SALVIRADAGDVAAQKALAQALAEAFGR 80 (249)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH---HhCC-ceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 55666 556678888888876643 3589999988776655443 3343 466777787654311 011246
Q ss_pred ccEEEEcCCC
Q 013515 314 VRAILLDPSC 323 (441)
Q Consensus 314 fD~Il~DpPC 323 (441)
+|.|+..+.-
T Consensus 81 id~vi~~ag~ 90 (249)
T PRK06500 81 LDAVFINAGV 90 (249)
T ss_pred CCEEEECCCC
Confidence 8999987653
No 385
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=67.61 E-value=63 Score=29.83 Aligned_cols=81 Identities=7% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+.+|| +..|+|+.+.+++..+. ...+|++++.++..+..+...+...+ .++.++.+|..+...-. ..++.
T Consensus 6 ~~~il-ItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 6 GRVAL-VTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 56788 44557888888877653 33589999999887777766666554 35788888887643110 01246
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.|+..+...
T Consensus 84 ~d~vi~~ag~~ 94 (251)
T PRK12826 84 LDILVANAGIF 94 (251)
T ss_pred CCEEEECCCCC
Confidence 89998877543
No 386
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=67.61 E-value=5.5 Score=37.67 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=51.6
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
-+||++.+|-||.--.+-..--++--|-|+|++.-+-+....|.. - +. +...|+..+...+-..-.+|.+++-||
T Consensus 4 LrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h---~-~L-~k~~~I~~lt~kefd~l~~~m~lMSPp 78 (338)
T KOG0919|consen 4 LRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYH---S-NL-VKTRNIQSLTVKEFDKLQANMLLMSPP 78 (338)
T ss_pred eehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcc---c-ch-hhccccceeeHhhhhhcccceEeeCCC
Confidence 378999999998755443332344567889999888777766621 1 10 112223222211100135789999999
Q ss_pred CCCCcccccccCc
Q 013515 323 CSGSGTAAERLDH 335 (441)
Q Consensus 323 CSg~G~~~~~pd~ 335 (441)
|--.--+.+.-|.
T Consensus 79 CQPfTRiG~q~D~ 91 (338)
T KOG0919|consen 79 CQPFTRIGLQRDT 91 (338)
T ss_pred CCchhhhcccccc
Confidence 9776554444443
No 387
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=67.43 E-value=39 Score=31.66 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=50.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+.+|| +..|+|+.+.+++..+.. ..+|+.+|.+...++.+.+.+ + .++.++..|..+..... ..++.
T Consensus 6 ~~~vl-ItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (257)
T PRK07067 6 GKVAL-LTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---G-PAAIAVSLDVTRQDSIDRIVAAAVERFGG 80 (257)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C-CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45666 455788889999887643 358999999988777654433 3 35777888887543210 11246
Q ss_pred ccEEEEcCCC
Q 013515 314 VRAILLDPSC 323 (441)
Q Consensus 314 fD~Il~DpPC 323 (441)
.|.++..+..
T Consensus 81 id~li~~ag~ 90 (257)
T PRK07067 81 IDILFNNAAL 90 (257)
T ss_pred CCEEEECCCc
Confidence 7988875543
No 388
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=67.30 E-value=12 Score=39.54 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=53.6
Q ss_pred EEEEEcCCCchH---HHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 244 KVLDACSAPGNK---TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 244 ~VLDl~ag~G~k---t~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+|+=+|||-|-. ++..++....+.+++|+|.+|.++-.++. ....+- +.|+++..|.+.+.+.. +..|.++.
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~---eq~DI~VS 445 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPR---EQADIIVS 445 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCch---hhccchHH
Confidence 577789999865 55566666667899999999999998876 332232 56999999999998542 56677753
No 389
>PRK05650 short chain dehydrogenase; Provisional
Probab=67.13 E-value=20 Score=34.09 Aligned_cols=77 Identities=10% Similarity=0.111 Sum_probs=52.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCCcc
Q 013515 244 KVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSEVR 315 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~fD 315 (441)
+|| +..|+|+.+..++..+.. ..+|+.++.+.+.++.+...++..|. ++.++..|+.+...-. ...+.+|
T Consensus 2 ~vl-VtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVM-ITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG-DGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEE-EecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 455 445688888888776543 35899999998888887777766653 5677888887643210 0124689
Q ss_pred EEEEcCC
Q 013515 316 AILLDPS 322 (441)
Q Consensus 316 ~Il~DpP 322 (441)
.|+..+.
T Consensus 80 ~lI~~ag 86 (270)
T PRK05650 80 VIVNNAG 86 (270)
T ss_pred EEEECCC
Confidence 9988653
No 390
>PRK06180 short chain dehydrogenase; Provisional
Probab=66.96 E-value=29 Score=33.15 Aligned_cols=77 Identities=9% Similarity=0.035 Sum_probs=49.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+..|| +..|+|+.+.++++.+.. ..+|++++.++..++.+... .+ .++.++..|..+...-. ..++.
T Consensus 4 ~~~vl-VtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~---~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWL-ITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL---HP-DRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEE-EecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh---cC-CCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 45677 555578888888876643 35899999998877655432 22 35677788887643110 11245
Q ss_pred ccEEEEcCCC
Q 013515 314 VRAILLDPSC 323 (441)
Q Consensus 314 fD~Il~DpPC 323 (441)
+|.|+..+.-
T Consensus 79 ~d~vv~~ag~ 88 (277)
T PRK06180 79 IDVLVNNAGY 88 (277)
T ss_pred CCEEEECCCc
Confidence 7999886643
No 391
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.95 E-value=62 Score=30.55 Aligned_cols=82 Identities=9% Similarity=0.003 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAP-GNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~-G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 311 (441)
.|..+|=.|+++ +|.+..+++.+.. ..+|+.++.+.+..+.+++..+...-.++.++..|+.+...- ...+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 367888888874 8899998887643 357877765432222333333333223567778888764311 0124
Q ss_pred CCccEEEEcCC
Q 013515 312 SEVRAILLDPS 322 (441)
Q Consensus 312 ~~fD~Il~DpP 322 (441)
+++|.++..+.
T Consensus 86 g~ld~lv~nag 96 (257)
T PRK08594 86 GVIHGVAHCIA 96 (257)
T ss_pred CCccEEEECcc
Confidence 67899988764
No 392
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=66.55 E-value=50 Score=32.74 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=44.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcC--CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-CCCCCCCCCCccEEEEc
Q 013515 244 KVLDACSAPGNKTVHLAALMKG--KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-LDPKDPAYSEVRAILLD 320 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~--~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~-~~~~~~~~~~fD~Il~D 320 (441)
+|| +.-|+|..+.+++..+.. .-+|+++|.+......+ .+...++++.+|... ..........+|.|+--
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~------~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL------VNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh------ccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 466 667799999999887643 25899999876433211 122357888899863 21110112357888864
Q ss_pred CCC
Q 013515 321 PSC 323 (441)
Q Consensus 321 pPC 323 (441)
+-+
T Consensus 76 aa~ 78 (347)
T PRK11908 76 VAI 78 (347)
T ss_pred ccc
Confidence 444
No 393
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=66.51 E-value=23 Score=34.70 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhC--C--CcEEEEeccCCCCCCCCCCCCCcc
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--A--ANIEVLHGDFLNLDPKDPAYSEVR 315 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g--~--~~v~~~~~D~~~~~~~~~~~~~fD 315 (441)
...++||=+|-|-|+.--..+.. ..-+.|.-+|++..-++..+..+..+- . +.|.+.-||...+..... .++||
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-ENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-cCCce
Confidence 34678999999999986655544 223678999999999999988888653 3 468888899877664432 37899
Q ss_pred EEEEcCC
Q 013515 316 AILLDPS 322 (441)
Q Consensus 316 ~Il~DpP 322 (441)
+|++|-.
T Consensus 198 Vii~dss 204 (337)
T KOG1562|consen 198 VIITDSS 204 (337)
T ss_pred EEEEecC
Confidence 9999865
No 394
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.49 E-value=73 Score=29.41 Aligned_cols=80 Identities=8% Similarity=0.139 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
+|.++|=.| |+|+.+..+++.+. ...+|+.+|.++.+++.+.+.++..+. ++.++..|..+.... ....+
T Consensus 4 ~~~~~lItG-~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITG-GAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 367888555 47888888887653 335899999999888877777766553 567778887653211 01124
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.+|.|+..+.
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 6799988664
No 395
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=66.49 E-value=24 Score=33.69 Aligned_cols=56 Identities=25% Similarity=0.220 Sum_probs=34.1
Q ss_pred hHHHHHHhCCC-CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHH
Q 013515 230 SSMVAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288 (441)
Q Consensus 230 s~l~~~~l~~~-~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~ 288 (441)
|-+.+..++-+ ..-.||++|+|+|--++.+|.+. ...++--|. +..+..++.+...
T Consensus 74 ~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~-~~~~~~L~~~~~~ 130 (248)
T KOG2793|consen 74 SELTATLIGFKTKYINVLELGSGTGLVGILAALLL--GAEVVLTDL-PKVVENLKFNRDK 130 (248)
T ss_pred chhhhccccccccceeEEEecCCccHHHHHHHHHh--cceeccCCc-hhhHHHHHHhhhh
Confidence 33444444433 45679999999997676666543 356665554 4556666666444
No 396
>PRK07063 short chain dehydrogenase; Provisional
Probab=66.38 E-value=61 Score=30.36 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=54.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g-~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+||=.|+ +|+.+.+++..+. ...+|+.++.+++.++.+.+.+...+ -.++.++..|..+..... ..++
T Consensus 7 ~k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 667886555 6788888877663 34589999999988888877776521 135778888887643110 1135
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.+|.++..+.
T Consensus 86 ~id~li~~ag 95 (260)
T PRK07063 86 PLDVLVNNAG 95 (260)
T ss_pred CCcEEEECCC
Confidence 6899988653
No 397
>PRK07904 short chain dehydrogenase; Provisional
Probab=65.99 E-value=22 Score=33.63 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC--cEEEEEeCCHHH-HHHHHHHHHHhCCCcEEEEeccCCCCCCCC------CCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKER-VRRLKDTIKLSGAANIEVLHGDFLNLDPKD------PAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~--~~V~a~D~~~~r-l~~l~~~~~~~g~~~v~~~~~D~~~~~~~~------~~~ 311 (441)
.+.+||=.|| +|+.+..+++.+... .+|+.++.+++. ++.+.+.++..+..++.++..|..+...-. ...
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 4567775555 788999998865332 489999998775 777777777766557888889987644210 012
Q ss_pred CCccEEEEc
Q 013515 312 SEVRAILLD 320 (441)
Q Consensus 312 ~~fD~Il~D 320 (441)
+.+|.++..
T Consensus 86 g~id~li~~ 94 (253)
T PRK07904 86 GDVDVAIVA 94 (253)
T ss_pred CCCCEEEEe
Confidence 468988873
No 398
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=65.88 E-value=72 Score=29.74 Aligned_cols=80 Identities=11% Similarity=0.144 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
.|.+||=.| |+|+.+..++..+. ...+|+.++.+++.++.+.+.++..|. ++.++..|..+.... ...++
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 367788655 57778888877653 346899999998888877777776664 477888888764311 01135
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
++|.|+..+.
T Consensus 88 ~id~vi~~ag 97 (256)
T PRK06124 88 RLDILVNNVG 97 (256)
T ss_pred CCCEEEECCC
Confidence 6799988764
No 399
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=65.04 E-value=19 Score=34.62 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhc----CCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP 306 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~----~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~ 306 (441)
.++..++|.|||.|..+.+++..+. +...++.+|....|.+.=. .+..... ..++-+..|+.++..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhccCCCCceEEEEEEeeccch
Confidence 5677999999999999999999874 2368899999877764332 2332221 245566677777663
No 400
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=64.70 E-value=10 Score=30.86 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=35.3
Q ss_pred EEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 245 VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
|| +|||.|..|..+++. +++.++..|+ .+++......++.... ..+|+|++-|.
T Consensus 3 Il-l~C~~GaSSs~la~k-------------------m~~~a~~~gi-~~~i~a~~~~e~~~~~---~~~Dvill~PQ 56 (99)
T cd05565 3 VL-VLCAGGGTSGLLANA-------------------LNKGAKERGV-PLEAAAGAYGSHYDMI---PDYDLVILAPQ 56 (99)
T ss_pred EE-EECCCCCCHHHHHHH-------------------HHHHHHHCCC-cEEEEEeeHHHHHHhc---cCCCEEEEcCh
Confidence 55 567888777766654 3455666787 3666666666555432 56899988666
No 401
>PRK08267 short chain dehydrogenase; Provisional
Probab=64.60 E-value=75 Score=29.74 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=49.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CC-CCCc
Q 013515 244 KVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PA-YSEV 314 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~-~~~f 314 (441)
+||= ..|+|+.+..++..+.. ..+|+.++.+++.++.+.+.+. | .++.++.+|+.+...-. .. .+++
T Consensus 3 ~vlI-tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 3 SIFI-TGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A-GNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred EEEE-eCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C-CceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 3554 44568888888876543 3589999999888777655443 2 36788889987644110 00 2568
Q ss_pred cEEEEcCCC
Q 013515 315 RAILLDPSC 323 (441)
Q Consensus 315 D~Il~DpPC 323 (441)
|.|+..+..
T Consensus 79 d~vi~~ag~ 87 (260)
T PRK08267 79 DVLFNNAGI 87 (260)
T ss_pred CEEEECCCC
Confidence 999986553
No 402
>PRK06182 short chain dehydrogenase; Validated
Probab=64.58 E-value=23 Score=33.63 Aligned_cols=73 Identities=8% Similarity=0.044 Sum_probs=47.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+..|| +..|+|+.+.++++.+.. ..+|++++.+++.++.+.. . ++.++.+|..+...-. ..++.
T Consensus 3 ~k~vl-ItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~---~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVAL-VTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----L---GVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----C---CCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 45666 555788899999887643 3589999999877654432 2 3567778887643210 01246
Q ss_pred ccEEEEcCC
Q 013515 314 VRAILLDPS 322 (441)
Q Consensus 314 fD~Il~DpP 322 (441)
+|.++..+.
T Consensus 75 id~li~~ag 83 (273)
T PRK06182 75 IDVLVNNAG 83 (273)
T ss_pred CCEEEECCC
Confidence 899998664
No 403
>PRK07102 short chain dehydrogenase; Provisional
Probab=64.54 E-value=32 Score=31.95 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=52.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC----CCCCCccEEE
Q 013515 244 KVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD----PAYSEVRAIL 318 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~----~~~~~fD~Il 318 (441)
+|+= -.|+|+.+..++..+.. ..+|++++.+++..+...+.+...+-.++.++..|..+..... .-...+|.|+
T Consensus 3 ~vlI-tGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv 81 (243)
T PRK07102 3 KILI-IGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL 81 (243)
T ss_pred EEEE-EcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence 5664 44678889888877643 3589999999988877666665544457888999987654210 0013479998
Q ss_pred EcCC
Q 013515 319 LDPS 322 (441)
Q Consensus 319 ~DpP 322 (441)
..+.
T Consensus 82 ~~ag 85 (243)
T PRK07102 82 IAVG 85 (243)
T ss_pred ECCc
Confidence 8765
No 404
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=64.38 E-value=28 Score=35.44 Aligned_cols=161 Identities=18% Similarity=0.158 Sum_probs=94.0
Q ss_pred cchhhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHH--HH-----HHHHHHHHhCC--CcEEE
Q 013515 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKER--VR-----RLKDTIKLSGA--ANIEV 296 (441)
Q Consensus 226 Qd~ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~r--l~-----~l~~~~~~~g~--~~v~~ 296 (441)
|-..-.-++.-++..+++...|+|+|.|+.....+... ....=+++++...- +. ..+..++.+|- ..+..
T Consensus 177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET 255 (419)
T ss_pred hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence 33334445567888999999999999999988888774 34555777775322 22 22333334553 34778
Q ss_pred EeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcE
Q 013515 297 LHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVER 376 (441)
Q Consensus 297 ~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~ 376 (441)
+++++........-....++|+++==- =.||.. ..-.+||.. ++.|+
T Consensus 256 i~gsf~~~~~v~eI~~eatvi~vNN~~-------Fdp~L~----------------------lr~~eil~~----ck~gt 302 (419)
T KOG3924|consen 256 IHGSFLDPKRVTEIQTEATVIFVNNVA-------FDPELK----------------------LRSKEILQK----CKDGT 302 (419)
T ss_pred cccccCCHHHHHHHhhcceEEEEeccc-------CCHHHH----------------------HhhHHHHhh----CCCcc
Confidence 888887644221111345667653221 122211 111134443 46687
Q ss_pred EEEEcCCCCC-----hhcHHHHHHHhchhcCCCeEEecCCCCCCCcccc
Q 013515 377 VVYSTCSIHQ-----VENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQ 420 (441)
Q Consensus 377 lvYsTCS~~~-----~ENe~vV~~~l~~~~~~~~~~~~~~~~~~~~~~~ 420 (441)
=+-|+-++.+ +-|-..+.+|+.......+.+++-.-.|+.....
T Consensus 303 rIiS~~~L~~r~rs~es~~~~~~df~~it~t~~l~l~e~nvSWT~~~v~ 351 (419)
T KOG3924|consen 303 RIISSKPLVPRPRSQESTSRRVSDFVAITKTRLLKLVENNVSWTGSKVP 351 (419)
T ss_pred eEeccccccccccchhHHHHHHHHHHhhccchhhhhhhcccccccCccc
Confidence 7778888877 6677788888865544445554444457665543
No 405
>PRK06138 short chain dehydrogenase; Provisional
Probab=64.08 E-value=37 Score=31.55 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=52.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
|.++| +..|+|+.+.+++..+.. ..+|+.++.+.+.+....+.+. .+ .++.++.+|+.+...-. ..+..
T Consensus 5 ~k~~l-ItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 81 (252)
T PRK06138 5 GRVAI-VTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG-GRAFARQGDVGSAEAVEALVDFVAARWGR 81 (252)
T ss_pred CcEEE-EeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC-CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45666 445578889988876543 3589999998877776666554 34 35778888987643210 11246
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.|+..+..+
T Consensus 82 id~vi~~ag~~ 92 (252)
T PRK06138 82 LDVLVNNAGFG 92 (252)
T ss_pred CCEEEECCCCC
Confidence 89999866543
No 406
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.69 E-value=12 Score=33.84 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=52.5
Q ss_pred cCcccccchhhHHHHHHhCC-CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 013515 220 NGCVFLQGKASSMVAAALAP-KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 298 (441)
Q Consensus 220 ~g~~~~Qd~ss~l~~~~l~~-~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~ 298 (441)
+-+.+.+|-+..++...+.. ..|.+|--+.|-+=..-.-.-+.--+.-+|+-++.+. +++.+| -.++.
T Consensus 51 sqfwy~~eta~~La~e~v~~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDk--------RFe~yg---~eFvf 119 (217)
T KOG3350|consen 51 SQFWYSDETARKLAAERVEASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDK--------RFELYG---TEFVF 119 (217)
T ss_pred hhhhcCHHHHHHHHHHHHhhcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehh--------hHHhcc---ceeEE
Confidence 44567788888888887654 4465565444433221111111111346788888774 355566 24666
Q ss_pred ccCCCCCC-CCCCCCCccEEEEcCCCCC
Q 013515 299 GDFLNLDP-KDPAYSEVRAILLDPSCSG 325 (441)
Q Consensus 299 ~D~~~~~~-~~~~~~~fD~Il~DpPCSg 325 (441)
-|-..... .+.-...||+|+.|||.=+
T Consensus 120 YDyN~p~dlp~~lk~~fdiivaDPPfL~ 147 (217)
T KOG3350|consen 120 YDYNCPLDLPDELKAHFDIIVADPPFLS 147 (217)
T ss_pred eccCCCCCCHHHHHhcccEEEeCCcccc
Confidence 66543221 1111257999999999643
No 407
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.41 E-value=85 Score=29.64 Aligned_cols=79 Identities=18% Similarity=0.053 Sum_probs=45.0
Q ss_pred CCEEEEEcCCCc-hHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPG-NKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G-~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
|..+|=.|++.| |.+..+++.+. ...+|+..+.+....+.+++..+..|. ..++..|+.+...- ...++
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~--~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGC--NFVSELDVTNPKSISNLFDDIKEKWG 85 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCC--ceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 567777777665 67777776653 235787777764333333333333342 23456787764311 11246
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.+|.++.++.
T Consensus 86 ~iDilVnnag 95 (260)
T PRK06603 86 SFDFLLHGMA 95 (260)
T ss_pred CccEEEEccc
Confidence 7898887553
No 408
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=63.33 E-value=68 Score=31.99 Aligned_cols=120 Identities=22% Similarity=0.260 Sum_probs=71.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+..|+ +..|+|..+.++...+ ..+-+|.|.=.+++--+...+..+.-|. ++.+++.+|..+...-+......|.|+-
T Consensus 6 ~~~Vc-VTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 6 GKKVC-VTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CcEEE-EeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 44555 6677999999997755 4445888888877764443333333333 4588999999887643322345777774
Q ss_pred cCCCCCCcccccccCccCCCCCCCCCCCcccH-HHHHHHHHHHHHHHHHHhCCCCCcEEEEEc
Q 013515 320 DPSCSGSGTAAERLDHLLPSHASGHTADPTEM-ERLNKLSAFQKKALRHALSFPGVERVVYST 381 (441)
Q Consensus 320 DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~-~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsT 381 (441)
-+. =+ .++. .+ .+ +-+.--.+--..+|+++.+...+.++||++
T Consensus 85 ~As----p~---~~~~----------~~--~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TS 128 (327)
T KOG1502|consen 85 TAS----PV---DFDL----------ED--PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTS 128 (327)
T ss_pred eCc----cC---CCCC----------CC--cHHhhhhHHHHHHHHHHHHHhccCCcceEEEec
Confidence 332 11 1111 00 12 233444566678899888766577777754
No 409
>PRK05599 hypothetical protein; Provisional
Probab=63.32 E-value=27 Score=32.79 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=54.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCCccE
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSEVRA 316 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~fD~ 316 (441)
.||=. .|++|.+..++..+....+|+.++.+++.++.+.+.++..|...+.++..|+.+...-. ..++..|.
T Consensus 2 ~vlIt-Gas~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 2 SILIL-GGTSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred eEEEE-eCccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 35534 44677888888876656789999999999988888887766545777888887654210 12357899
Q ss_pred EEEcC
Q 013515 317 ILLDP 321 (441)
Q Consensus 317 Il~Dp 321 (441)
++.++
T Consensus 81 lv~na 85 (246)
T PRK05599 81 AVVAF 85 (246)
T ss_pred EEEec
Confidence 98854
No 410
>PRK08589 short chain dehydrogenase; Validated
Probab=63.15 E-value=67 Score=30.51 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
|.+|| +..|+|+.+..++..+. ...+|+.++.+ ..++.+.+.++..+. ++.++..|..+..... ..++.
T Consensus 6 ~k~vl-ItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 6 NKVAV-ITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDISDEQQVKDFASEIKEQFGR 82 (272)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 55676 45556778888877653 34689999998 666666666665553 5777888887643110 12356
Q ss_pred ccEEEEcCCC
Q 013515 314 VRAILLDPSC 323 (441)
Q Consensus 314 fD~Il~DpPC 323 (441)
.|.++.++..
T Consensus 83 id~li~~Ag~ 92 (272)
T PRK08589 83 VDVLFNNAGV 92 (272)
T ss_pred cCEEEECCCC
Confidence 8999988753
No 411
>PRK12746 short chain dehydrogenase; Provisional
Probab=63.11 E-value=47 Score=30.96 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=46.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCc-EEEEE-eCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---C-------
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKG-KIVAC-ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---P------- 309 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~-~V~a~-D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~---~------- 309 (441)
+.+|| +..|+|+.+.++++.+...| .|+.+ ..+...++.....+...+ ..+.++..|..+...-. .
T Consensus 6 ~~~il-ItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 83 (254)
T PRK12746 6 GKVAL-VTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNG-GKAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence 45677 44568999999988764444 45443 455655554444444333 34778888887643210 0
Q ss_pred ---CCCCccEEEEcCC
Q 013515 310 ---AYSEVRAILLDPS 322 (441)
Q Consensus 310 ---~~~~fD~Il~DpP 322 (441)
.....|.|+..+-
T Consensus 84 ~~~~~~~id~vi~~ag 99 (254)
T PRK12746 84 IRVGTSEIDILVNNAG 99 (254)
T ss_pred cccCCCCccEEEECCC
Confidence 0135799987663
No 412
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=62.96 E-value=82 Score=30.56 Aligned_cols=44 Identities=16% Similarity=0.056 Sum_probs=36.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHH
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 286 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~ 286 (441)
....+||--|||-|..+..+|.+ .-.+.|+|.|--|+-...-.+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiL 98 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFIL 98 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHH
Confidence 34578999999999999999987 368999999999976655443
No 413
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=62.58 E-value=7.2 Score=36.22 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.7
Q ss_pred CCccEEEEcCCCCCCccc
Q 013515 312 SEVRAILLDPSCSGSGTA 329 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G~~ 329 (441)
...+.+++|=||||+-+.
T Consensus 150 h~P~i~vlDEP~sGLDi~ 167 (245)
T COG4555 150 HDPSILVLDEPTSGLDIR 167 (245)
T ss_pred cCCCeEEEcCCCCCccHH
Confidence 346889999999998764
No 414
>PRK06181 short chain dehydrogenase; Provisional
Probab=62.31 E-value=53 Score=30.81 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=51.7
Q ss_pred CEEEEEcCCCchHHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCCc
Q 013515 243 WKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSEV 314 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~f 314 (441)
.+|| +..|+|+.+.+++..+ ....+|++++.++...+.+.+.+...+. ++.++..|..+..... ..+...
T Consensus 2 ~~vl-VtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVI-ITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEE-EecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3566 4557788888887654 3346899999998887777776666553 5777888887643210 012467
Q ss_pred cEEEEcC
Q 013515 315 RAILLDP 321 (441)
Q Consensus 315 D~Il~Dp 321 (441)
|.|+..+
T Consensus 80 d~vi~~a 86 (263)
T PRK06181 80 DILVNNA 86 (263)
T ss_pred CEEEECC
Confidence 9998754
No 415
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.22 E-value=79 Score=30.20 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAP-GNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~-G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 311 (441)
.|..+|=.|++. +|.+..++..+.. ..+|+.++.+....+.+++..+..|. ...+..|+.+...- ...+
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS--DFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC--ceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 367888888876 4788888776633 35788888775544444444444453 23567888764321 0124
Q ss_pred CCccEEEEcCC
Q 013515 312 SEVRAILLDPS 322 (441)
Q Consensus 312 ~~fD~Il~DpP 322 (441)
+.+|.++.++.
T Consensus 84 g~iD~lVnnAG 94 (271)
T PRK06505 84 GKLDFVVHAIG 94 (271)
T ss_pred CCCCEEEECCc
Confidence 67899888663
No 416
>PRK05876 short chain dehydrogenase; Provisional
Probab=60.80 E-value=94 Score=29.69 Aligned_cols=80 Identities=9% Similarity=0.136 Sum_probs=54.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~ 313 (441)
|..||=.| |+|+.+.+++..+.. ..+|+.+|.++..++.+.+.++..|. .+.++..|+.+...- ...++.
T Consensus 6 ~k~vlVTG-as~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (275)
T PRK05876 6 GRGAVITG-GASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLLGH 83 (275)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 56777444 568888888876643 35899999998888877776665554 467788888764311 011356
Q ss_pred ccEEEEcCCC
Q 013515 314 VRAILLDPSC 323 (441)
Q Consensus 314 fD~Il~DpPC 323 (441)
.|.++..+.-
T Consensus 84 id~li~nAg~ 93 (275)
T PRK05876 84 VDVVFSNAGI 93 (275)
T ss_pred CCEEEECCCc
Confidence 8999987653
No 417
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=60.67 E-value=52 Score=36.16 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=48.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcC--CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCCCccE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKG--KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVRA 316 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~--~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~fD~ 316 (441)
+++.+|| +..|+|..+.++++.+.. .-+|+++|..+...... .+..+++++.+|..+.... ......+|.
T Consensus 313 ~~~~~VL-VTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~------~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ 385 (660)
T PRK08125 313 KRRTRVL-ILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRF------LGHPRFHFVEGDISIHSEWIEYHIKKCDV 385 (660)
T ss_pred hcCCEEE-EECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhh------cCCCceEEEeccccCcHHHHHHHhcCCCE
Confidence 4577888 666799999999987654 24999999876433211 1224578888998763211 001245788
Q ss_pred EEEcCC
Q 013515 317 ILLDPS 322 (441)
Q Consensus 317 Il~DpP 322 (441)
|+-=+-
T Consensus 386 ViHlAa 391 (660)
T PRK08125 386 VLPLVA 391 (660)
T ss_pred EEECcc
Confidence 886443
No 418
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=60.41 E-value=64 Score=29.89 Aligned_cols=79 Identities=10% Similarity=0.149 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.|.+||=.|+ +|+.+.+++..+... ..|+.++.+. ...+.+.++..+ ..+.++..|+.+...-. ...+
T Consensus 4 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGA-NTGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALG-RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3667775555 677888888776443 4888888764 334445555555 35778888887643210 1124
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.|+..+..
T Consensus 80 ~~d~li~~ag~ 90 (248)
T TIGR01832 80 HIDILVNNAGI 90 (248)
T ss_pred CCCEEEECCCC
Confidence 68999987654
No 419
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=60.22 E-value=12 Score=35.50 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHH
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~ 283 (441)
+..+++|.+||+|..+..+.. ....|+.+|+++.-....+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~---~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ---PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc---cccceeeeechHHHHHHHH
Confidence 688999999999998887755 2478999999986554433
No 420
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=60.06 E-value=19 Score=33.00 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=45.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcC---CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~---~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~ 305 (441)
...+.|++.|+.-||.++..|..|-. ..+|+++|++-+-+..+... .+.|.++.++..+..
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpa 131 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPA 131 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHH
Confidence 34669999999999999998887643 35899999985444332211 567999999887754
No 421
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=59.74 E-value=4 Score=34.66 Aligned_cols=75 Identities=13% Similarity=0.196 Sum_probs=43.3
Q ss_pred EEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC
Q 013515 294 IEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 373 (441)
Q Consensus 294 v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~ 373 (441)
+++..+|+.+...... ..||.|++|+-.. .++||. |+. +++....++.+
T Consensus 33 L~L~~gDa~~~l~~l~--~~~Da~ylDgFsP-----~~nPel-------------Ws~-----------e~~~~l~~~~~ 81 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLD--ARFDAWYLDGFSP-----AKNPEL-------------WSE-----------ELFKKLARLSK 81 (124)
T ss_dssp EEEEES-HHHHHHHB---T-EEEEEE-SS-T-----TTSGGG-------------SSH-----------HHHHHHHHHEE
T ss_pred EEEEEcHHHHHHHhCc--ccCCEEEecCCCC-----cCCccc-------------CCH-----------HHHHHHHHHhC
Confidence 5667788876544322 6799999997422 357764 333 56666666666
Q ss_pred -CcEEEEEcCCCCChhcHHHHHHHhchhcCCCeEEec
Q 013515 374 -VERVVYSTCSIHQVENEDVIKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 374 -~G~lvYsTCS~~~~ENe~vV~~~l~~~~~~~~~~~~ 409 (441)
+|+++--||+ ..|.+-|. ..||++..
T Consensus 82 ~~~~l~Tys~a-------~~Vr~~L~---~aGF~v~~ 108 (124)
T PF05430_consen 82 PGGTLATYSSA-------GAVRRALQ---QAGFEVEK 108 (124)
T ss_dssp EEEEEEES--B-------HHHHHHHH---HCTEEEEE
T ss_pred CCcEEEEeech-------HHHHHHHH---HcCCEEEE
Confidence 4555443444 77888885 46898754
No 422
>PRK08278 short chain dehydrogenase; Provisional
Probab=59.67 E-value=37 Score=32.39 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=51.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHH-------HHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKE-------RVRRLKDTIKLSGAANIEVLHGDFLNLDPKD----- 308 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~-------rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~----- 308 (441)
|.++| +..|+|+.+.+++..+. ....|+.++.+.. .++.+.+.++..|. ++.++..|+.+...-.
T Consensus 6 ~k~vl-ItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 6 GKTLF-ITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG-QALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHH
Confidence 55677 55557888998888664 3358888887653 24444445555553 5777888887654110
Q ss_pred --CCCCCccEEEEcCCCC
Q 013515 309 --PAYSEVRAILLDPSCS 324 (441)
Q Consensus 309 --~~~~~fD~Il~DpPCS 324 (441)
..++.+|.|+..+...
T Consensus 84 ~~~~~g~id~li~~ag~~ 101 (273)
T PRK08278 84 AVERFGGIDICVNNASAI 101 (273)
T ss_pred HHHHhCCCCEEEECCCCc
Confidence 1124689999877543
No 423
>PRK06949 short chain dehydrogenase; Provisional
Probab=59.61 E-value=48 Score=30.90 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
.+.+||=.| |+|+.+.+++..+... .+|++++.+++.++.+...++..+. ++.++..|+.+...- ...++
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 366777555 7888899988876433 4799999999998888777765543 577788888753211 01124
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.|+..+.-
T Consensus 86 ~~d~li~~ag~ 96 (258)
T PRK06949 86 TIDILVNNSGV 96 (258)
T ss_pred CCCEEEECCCC
Confidence 67999886653
No 424
>PRK07074 short chain dehydrogenase; Provisional
Probab=59.38 E-value=38 Score=31.69 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=48.5
Q ss_pred CEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCCc
Q 013515 243 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSEV 314 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~f 314 (441)
.++| +..|+|+.+..++..+. ...+|++++.++..++.+.+.+. + ..+.++..|+.+...-. ..++.+
T Consensus 3 k~il-ItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~--~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07074 3 RTAL-VTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG--D-ARFVPVACDLTDAASLAAALANAAAERGPV 78 (257)
T ss_pred CEEE-EECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--C-CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3455 44556778888887663 23589999999887776655442 2 34677888887654210 012357
Q ss_pred cEEEEcCC
Q 013515 315 RAILLDPS 322 (441)
Q Consensus 315 D~Il~DpP 322 (441)
|.|+..+.
T Consensus 79 d~vi~~ag 86 (257)
T PRK07074 79 DVLVANAG 86 (257)
T ss_pred CEEEECCC
Confidence 99988664
No 425
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=59.03 E-value=20 Score=30.64 Aligned_cols=78 Identities=23% Similarity=0.307 Sum_probs=46.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
-.|.+||=+|+|--+.+...+-.-.+..+|+-+..+.++.+.+.+.+ +-.++.+...+ ++... ...+|.|+.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~~~~~~~~~~--~~~~~---~~~~DivI~ 81 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GGVNIEAIPLE--DLEEA---LQEADIVIN 81 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TGCSEEEEEGG--GHCHH---HHTESEEEE
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---CccccceeeHH--HHHHH---HhhCCeEEE
Confidence 35889999998654444333222234567999999998888777766 33345554432 22211 146898887
Q ss_pred cCCCCCCcc
Q 013515 320 DPSCSGSGT 328 (441)
Q Consensus 320 DpPCSg~G~ 328 (441)
|++.|+
T Consensus 82 ---aT~~~~ 87 (135)
T PF01488_consen 82 ---ATPSGM 87 (135)
T ss_dssp ----SSTTS
T ss_pred ---ecCCCC
Confidence 444553
No 426
>PRK09291 short chain dehydrogenase; Provisional
Probab=59.01 E-value=1.5e+02 Score=27.43 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=52.3
Q ss_pred CEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-CCCCccEEEEc
Q 013515 243 WKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-AYSEVRAILLD 320 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~-~~~~fD~Il~D 320 (441)
.+|| +..|+|+.+.++++.+. ...+|++++.++...+.+.+..+..+. .+.++.+|..+...-.. .....|.|+.+
T Consensus 3 ~~vl-VtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTIL-ITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 4566 44557888888877653 346899999988887777776666664 47788888876431100 01368999986
Q ss_pred CC
Q 013515 321 PS 322 (441)
Q Consensus 321 pP 322 (441)
+.
T Consensus 81 ag 82 (257)
T PRK09291 81 AG 82 (257)
T ss_pred CC
Confidence 54
No 427
>PRK06198 short chain dehydrogenase; Provisional
Probab=58.74 E-value=78 Score=29.54 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGK-IVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~-V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 311 (441)
.+.+|+=. .|+|+.+.++++.+.. ..+ |+.++.++.........+...+. .+.++..|+.+..... ..+
T Consensus 5 ~~k~vlIt-Ga~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 5 DGKVALVT-GGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGA-KAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCcEEEEe-CCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35677744 4678888888876632 235 99999988777666555555443 5667788887643110 012
Q ss_pred CCccEEEEcCCCC
Q 013515 312 SEVRAILLDPSCS 324 (441)
Q Consensus 312 ~~fD~Il~DpPCS 324 (441)
+.+|.|+..+..+
T Consensus 83 g~id~li~~ag~~ 95 (260)
T PRK06198 83 GRLDALVNAAGLT 95 (260)
T ss_pred CCCCEEEECCCcC
Confidence 4579998866543
No 428
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=58.58 E-value=35 Score=32.82 Aligned_cols=108 Identities=18% Similarity=0.155 Sum_probs=61.7
Q ss_pred EEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCc-cEEEEcCC
Q 013515 245 VLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV-RAILLDPS 322 (441)
Q Consensus 245 VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~f-D~Il~DpP 322 (441)
||=.|+ +|..+.++++.+.. ...|+++|.+........ .++.++.+|..+........... |.|+..+.
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa 73 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL--------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAA 73 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHhCCCeEEEEeCCCccccccc--------cccceeeecccchHHHHHHHhcCCCEEEEccc
Confidence 565555 99999999888754 469999998765544433 24567777766643221111233 88887665
Q ss_pred CCCCcccccccCccCCCCCCCCCCCcccHH-HHHHHHHHHHHHHHHHhCCCCCcEEEE
Q 013515 323 CSGSGTAAERLDHLLPSHASGHTADPTEME-RLNKLSAFQKKALRHALSFPGVERVVY 379 (441)
Q Consensus 323 CSg~G~~~~~pd~~~~~~~~~~~~~~~~~~-~~~~l~~~Q~~lL~~a~~~~~~G~lvY 379 (441)
-+....... + .+. -.......-..+|+.|.+ .....+||
T Consensus 74 ~~~~~~~~~---------------~--~~~~~~~~nv~gt~~ll~aa~~-~~~~~~v~ 113 (314)
T COG0451 74 QSSVPDSNA---------------S--DPAEFLDVNVDGTLNLLEAARA-AGVKRFVF 113 (314)
T ss_pred cCchhhhhh---------------h--CHHHHHHHHHHHHHHHHHHHHH-cCCCeEEE
Confidence 433211100 0 011 233455566677777766 23456666
No 429
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.29 E-value=1.5e+02 Score=27.71 Aligned_cols=84 Identities=7% Similarity=0.067 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHhcC-CcEEEEEeC-----------CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 013515 241 PGWKVLDACSAP-GNKTVHLAALMKG-KGKIVACEL-----------NKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 241 ~g~~VLDl~ag~-G~kt~~la~~~~~-~~~V~a~D~-----------~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 307 (441)
.|.+||=.|+.. |+.+.+++..+.. ..+|+..+. +......+.+.++..|. ++.++..|+.+....
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~i 83 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV-KVSSMELDLTQNDAP 83 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHH
Confidence 467888888774 6888888776633 347776642 12334455566666664 577788887764311
Q ss_pred -------CCCCCCccEEEEcCCCCC
Q 013515 308 -------DPAYSEVRAILLDPSCSG 325 (441)
Q Consensus 308 -------~~~~~~fD~Il~DpPCSg 325 (441)
...++..|.|+..+.+..
T Consensus 84 ~~~~~~~~~~~g~id~li~~ag~~~ 108 (256)
T PRK12859 84 KELLNKVTEQLGYPHILVNNAAYST 108 (256)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCC
Confidence 011356799999887643
No 430
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=57.71 E-value=35 Score=32.89 Aligned_cols=62 Identities=26% Similarity=0.390 Sum_probs=43.7
Q ss_pred ccccchhhH-HHHHHhCCCCCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHH
Q 013515 223 VFLQGKASS-MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDT 285 (441)
Q Consensus 223 ~~~Qd~ss~-l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~ 285 (441)
..+|-..++ +.-++...+||+.|| +.++.||.++.+.+++.- ..++++.-.+.++.+.+++|
T Consensus 127 ~llq~lTAy~ll~e~y~vkpGhtVl-vhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken 190 (336)
T KOG1197|consen 127 LLLQGLTAYMLLFEAYNVKPGHTVL-VHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN 190 (336)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEE-EEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc
Confidence 345554443 334566789999999 678888888877776532 35778888888888887765
No 431
>PRK08219 short chain dehydrogenase; Provisional
Probab=57.58 E-value=44 Score=30.40 Aligned_cols=75 Identities=9% Similarity=0.083 Sum_probs=47.5
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---CCCCCccEEEE
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---PAYSEVRAILL 319 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~---~~~~~fD~Il~ 319 (441)
.+||=. .|+|+.+.+++..+....+|++++.++..++.+.+.. ..+.++.+|..+...-. ...+..|.|+.
T Consensus 4 ~~vlVt-G~~g~iG~~l~~~l~~~~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~ 77 (227)
T PRK08219 4 PTALIT-GASRGIGAAIARELAPTHTLLLGGRPAERLDELAAEL-----PGATPFPVDLTDPEAIAAAVEQLGRLDVLVH 77 (227)
T ss_pred CEEEEe-cCCcHHHHHHHHHHHhhCCEEEEeCCHHHHHHHHHHh-----ccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence 356644 4568888888775543378999999987766554322 24677888887643210 11235789988
Q ss_pred cCCC
Q 013515 320 DPSC 323 (441)
Q Consensus 320 DpPC 323 (441)
-+..
T Consensus 78 ~ag~ 81 (227)
T PRK08219 78 NAGV 81 (227)
T ss_pred CCCc
Confidence 6544
No 432
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=57.54 E-value=1.7e+02 Score=28.39 Aligned_cols=87 Identities=11% Similarity=0.183 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 311 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 311 (441)
..+.++| +..|++|.+..+|+.+.. +..|+-+-.+.++|+.+.+.++...--.+.++..|..+..... ...
T Consensus 4 ~~~~~~l-ITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 4 MKGKTAL-ITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCCcEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 3466777 455678889888887744 4689999999999999999998744224778888987765211 112
Q ss_pred CCccEEEEcCCCCCCc
Q 013515 312 SEVRAILLDPSCSGSG 327 (441)
Q Consensus 312 ~~fD~Il~DpPCSg~G 327 (441)
..+|+.+-++.-...|
T Consensus 83 ~~IdvLVNNAG~g~~g 98 (265)
T COG0300 83 GPIDVLVNNAGFGTFG 98 (265)
T ss_pred CcccEEEECCCcCCcc
Confidence 4689888855544333
No 433
>PRK08263 short chain dehydrogenase; Provisional
Probab=57.13 E-value=85 Score=29.79 Aligned_cols=78 Identities=9% Similarity=0.026 Sum_probs=49.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+..||=.| |+|+.+.+++..+. ...+|+.++.+++.++.+.+.. + ..+.++..|+.+...-. ...+.
T Consensus 3 ~k~vlItG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PRK08263 3 EKVWFITG-ASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY---G-DRLLPLALDVTDRAAVFAAVETAVEHFGR 77 (275)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---c-CCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 34566555 67888999887663 3358999999988776654432 2 34667778876543210 01246
Q ss_pred ccEEEEcCCCC
Q 013515 314 VRAILLDPSCS 324 (441)
Q Consensus 314 fD~Il~DpPCS 324 (441)
+|.|+..+...
T Consensus 78 ~d~vi~~ag~~ 88 (275)
T PRK08263 78 LDIVVNNAGYG 88 (275)
T ss_pred CCEEEECCCCc
Confidence 79998866543
No 434
>PRK05993 short chain dehydrogenase; Provisional
Probab=56.97 E-value=43 Score=31.99 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=46.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------C-CCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------P-AYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~-~~~ 312 (441)
+..||=.| |+|+.+.+++..+. ...+|++++.+++.++.+.. .+ +.++..|..+..... . ..+
T Consensus 4 ~k~vlItG-asggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~---~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 4 KRSILITG-CSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG---LEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC---ceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 55677444 57889999887664 34689999999887765543 23 556778877643100 0 014
Q ss_pred CccEEEEcC
Q 013515 313 EVRAILLDP 321 (441)
Q Consensus 313 ~fD~Il~Dp 321 (441)
.+|.|+..+
T Consensus 76 ~id~li~~A 84 (277)
T PRK05993 76 RLDALFNNG 84 (277)
T ss_pred CccEEEECC
Confidence 679998865
No 435
>PRK07041 short chain dehydrogenase; Provisional
Probab=56.79 E-value=1.2e+02 Score=27.72 Aligned_cols=73 Identities=8% Similarity=0.099 Sum_probs=47.1
Q ss_pred cCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CCCCCCccEEEEcCCC
Q 013515 249 CSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DPAYSEVRAILLDPSC 323 (441)
Q Consensus 249 ~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~---~~~~~~fD~Il~DpPC 323 (441)
..|+|+.+..++..+. ...+|+.++.++..++...+.++. + .++.++..|..+...- ....+.+|.++..+..
T Consensus 3 tGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 3 VGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG-G-APVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred ecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence 3467888888877653 336899999998877766555542 3 3577788888764311 0112457988886653
No 436
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=56.46 E-value=95 Score=31.87 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=22.9
Q ss_pred CCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHH
Q 013515 251 APGNKTVHLAALMK-GKGKIVACELNKERVRRLKD 284 (441)
Q Consensus 251 g~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~ 284 (441)
|.|..+..+|..+. ...+|+++|+++++++.+++
T Consensus 7 GlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 7 GLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNK 41 (411)
T ss_pred CCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhc
Confidence 44555555555443 23589999999999887653
No 437
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.33 E-value=85 Score=29.46 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAP-GNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~-G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~ 311 (441)
.|..||=.|++. +|.+..+++.+. ...+|+.++.+.+..+. +++..-..+.++..|+.+...- ...+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKS----LQKLVDEEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHH----HHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 367888888875 788888887764 34588888877432222 2222223567788888764311 0124
Q ss_pred CCccEEEEcCC
Q 013515 312 SEVRAILLDPS 322 (441)
Q Consensus 312 ~~fD~Il~DpP 322 (441)
+++|.++.++.
T Consensus 82 g~iD~lv~nAg 92 (252)
T PRK06079 82 GKIDGIVHAIA 92 (252)
T ss_pred CCCCEEEEccc
Confidence 67899988764
No 438
>PRK07060 short chain dehydrogenase; Provisional
Probab=56.10 E-value=44 Score=30.83 Aligned_cols=78 Identities=19% Similarity=0.147 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CCCCCCccE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DPAYSEVRA 316 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~---~~~~~~fD~ 316 (441)
.+.++| +..|+|+.+.+++..+.. ..+|+.++.+++.++.+.+. .+ ..++..|..+...- ......+|.
T Consensus 8 ~~~~~l-ItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~---~~---~~~~~~D~~~~~~v~~~~~~~~~~d~ 80 (245)
T PRK07060 8 SGKSVL-VTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGE---TG---CEPLRLDVGDDAAIRAALAAAGAFDG 80 (245)
T ss_pred CCCEEE-EeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC---CeEEEecCCCHHHHHHHHHHhCCCCE
Confidence 356777 566678888888776632 34899999998766544332 23 34566777653310 011246899
Q ss_pred EEEcCCCCC
Q 013515 317 ILLDPSCSG 325 (441)
Q Consensus 317 Il~DpPCSg 325 (441)
|+..+..+.
T Consensus 81 vi~~ag~~~ 89 (245)
T PRK07060 81 LVNCAGIAS 89 (245)
T ss_pred EEECCCCCC
Confidence 998876544
No 439
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=56.09 E-value=29 Score=33.06 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=54.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-------CCCCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-------KDPAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~-------~~~~~~~ 313 (441)
+..|+ +..++.|++...|+.+. ...+|+......++|+.+...+.. ..+.++..|.++... ....+++
T Consensus 6 ~kv~l-ITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---~~~~~~~~DVtD~~~~~~~i~~~~~~~g~ 81 (246)
T COG4221 6 GKVAL-ITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA---GAALALALDVTDRAAVEAAIEALPEEFGR 81 (246)
T ss_pred CcEEE-EecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---CceEEEeeccCCHHHHHHHHHHHHHhhCc
Confidence 33445 55555667777777664 346999999999999988877765 356778888887642 1134678
Q ss_pred ccEEEEcCCC
Q 013515 314 VRAILLDPSC 323 (441)
Q Consensus 314 fD~Il~DpPC 323 (441)
+|+++.++--
T Consensus 82 iDiLvNNAGl 91 (246)
T COG4221 82 IDILVNNAGL 91 (246)
T ss_pred ccEEEecCCC
Confidence 9999988763
No 440
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=55.89 E-value=24 Score=35.08 Aligned_cols=47 Identities=13% Similarity=-0.053 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEcCCCchHH-HHHHHHhcCCcEEEEEeCCHHHHHHHHH
Q 013515 238 APKPGWKVLDACSAPGNKT-VHLAALMKGKGKIVACELNKERVRRLKD 284 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt-~~la~~~~~~~~V~a~D~~~~rl~~l~~ 284 (441)
.+++|++||=.|||+=|.. .+++..+.+..+|+++|.++++++.+++
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4578999998887544432 3445543334689999999999988764
No 441
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=55.76 E-value=20 Score=35.48 Aligned_cols=41 Identities=17% Similarity=-0.019 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHH
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~ 284 (441)
..-+||-=|||.|..+.-|+.+. -.+-+.|.|--|+-...-
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G---~~~qGNEfSy~Mli~S~F 190 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLG---FKCQGNEFSYFMLICSSF 190 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhc---ccccccHHHHHHHHHHHH
Confidence 34578989999999999999873 356677887777654433
No 442
>PRK08324 short chain dehydrogenase; Validated
Probab=55.61 E-value=48 Score=36.56 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.|.+||= ..|+|+.+.+++..+. ...+|+.+|.++..++.+...+... .++.++..|..+..... ..++
T Consensus 421 ~gk~vLV-TGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALV-TGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEE-ecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4677774 4456788888877653 2358999999998877666554432 35778888887643110 1134
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.|+..+..+
T Consensus 498 ~iDvvI~~AG~~ 509 (681)
T PRK08324 498 GVDIVVSNAGIA 509 (681)
T ss_pred CCCEEEECCCCC
Confidence 689998866543
No 443
>PRK09135 pteridine reductase; Provisional
Probab=55.49 E-value=90 Score=28.71 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCC-HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELN-KERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~-~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 311 (441)
.+.+||=.| |+|+.+.++++.+. ...+|++++.+ ....+.+...+...+-.++.++.+|..+..... ..+
T Consensus 5 ~~~~vlItG-a~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 5 SAKVALITG-GARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356788776 47889999887764 34689999875 455555555555443345778888987644210 012
Q ss_pred CCccEEEEcCC
Q 013515 312 SEVRAILLDPS 322 (441)
Q Consensus 312 ~~fD~Il~DpP 322 (441)
..+|.|+..+.
T Consensus 84 ~~~d~vi~~ag 94 (249)
T PRK09135 84 GRLDALVNNAS 94 (249)
T ss_pred CCCCEEEECCC
Confidence 35799998664
No 444
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=55.42 E-value=26 Score=37.25 Aligned_cols=49 Identities=18% Similarity=0.149 Sum_probs=37.5
Q ss_pred CCCCCCEEEEEcCCCchHHH-HHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 013515 238 APKPGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (441)
Q Consensus 238 ~~~~g~~VLDl~ag~G~kt~-~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~ 292 (441)
+..+|++|+=+|||+=|... ..+..++ ..|+++|.++++++.+++ +|.+
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~ 210 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAE 210 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe
Confidence 35689999999999877644 4555553 379999999999987755 5764
No 445
>PRK07454 short chain dehydrogenase; Provisional
Probab=55.38 E-value=71 Score=29.47 Aligned_cols=78 Identities=9% Similarity=0.056 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+.++|=.| |+|+.+..+++.+.. ..+|++++.+++..+.+.+.++..+ .++.++.+|..+...-. ..+++
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 44666555 578888888876643 3589999999888877777666554 35778889987644110 11245
Q ss_pred ccEEEEcC
Q 013515 314 VRAILLDP 321 (441)
Q Consensus 314 fD~Il~Dp 321 (441)
.|.|+..+
T Consensus 84 id~lv~~a 91 (241)
T PRK07454 84 PDVLINNA 91 (241)
T ss_pred CCEEEECC
Confidence 79888754
No 446
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.20 E-value=1.5e+02 Score=28.18 Aligned_cols=79 Identities=10% Similarity=0.041 Sum_probs=48.5
Q ss_pred CCEEEEEcCC-CchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSA-PGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag-~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
|..+|=.|++ ++|.+..+++.+.. ..+|+.++.+....+.+++..+.+| .+..+..|..+...- ...++
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~g 87 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG--AFVAGHCDVTDEASIDAVFETLEKKWG 87 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC--CceEEecCCCCHHHHHHHHHHHHHhcC
Confidence 5678877886 48899998887743 3577766655433344444444444 244577887654311 11246
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
..|.++.++.
T Consensus 88 ~iD~lv~nAG 97 (272)
T PRK08159 88 KLDFVVHAIG 97 (272)
T ss_pred CCcEEEECCc
Confidence 7899998775
No 447
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=54.89 E-value=64 Score=31.59 Aligned_cols=78 Identities=14% Similarity=0.122 Sum_probs=42.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC--CCCCccEEEEc
Q 013515 244 KVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP--AYSEVRAILLD 320 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~--~~~~fD~Il~D 320 (441)
+|| +-.|+|..+.+++..+.. ..+|++++............+...+-.++.++.+|..+...-.. ....+|.|+.-
T Consensus 2 ~vl-VtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~ 80 (338)
T PRK10675 2 RVL-VTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF 80 (338)
T ss_pred eEE-EECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence 345 446689999999886533 35788887532211111111222222345677788765432110 01257999876
Q ss_pred CC
Q 013515 321 PS 322 (441)
Q Consensus 321 pP 322 (441)
+.
T Consensus 81 a~ 82 (338)
T PRK10675 81 AG 82 (338)
T ss_pred Cc
Confidence 54
No 448
>PRK12744 short chain dehydrogenase; Provisional
Probab=54.35 E-value=1.2e+02 Score=28.21 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=47.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeCC----HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------C
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELN----KERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------P 309 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~~----~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~ 309 (441)
+.+||=. .|+|+.+..+++.+... .+|+.++.+ .+..+.+.+.++..+. ++.++..|+.+...-. .
T Consensus 8 ~k~vlIt-Ga~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 8 GKVVLIA-GGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGA-KAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CcEEEEE-CCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCC-cEEEEecCcCCHHHHHHHHHHHHH
Confidence 5577744 46888999998877533 465666543 3444444444554553 5778888987643210 1
Q ss_pred CCCCccEEEEcC
Q 013515 310 AYSEVRAILLDP 321 (441)
Q Consensus 310 ~~~~fD~Il~Dp 321 (441)
.++.+|.++..+
T Consensus 86 ~~~~id~li~~a 97 (257)
T PRK12744 86 AFGRPDIAINTV 97 (257)
T ss_pred hhCCCCEEEECC
Confidence 124689888765
No 449
>PRK06482 short chain dehydrogenase; Provisional
Probab=53.98 E-value=65 Score=30.52 Aligned_cols=76 Identities=12% Similarity=0.140 Sum_probs=50.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCCcc
Q 013515 244 KVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSEVR 315 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~fD 315 (441)
.|| +..|+|+.+.+++..+.. ..+|++++.+++.++.++... + .++.++..|..+...-. .....+|
T Consensus 4 ~vl-VtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (276)
T PRK06482 4 TWF-ITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---G-DRLWVLQLDVTDSAAVRAVVDRAFAALGRID 78 (276)
T ss_pred EEE-EecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---c-CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 466 556689999998876643 358999999987776655432 2 35778888887653110 0124579
Q ss_pred EEEEcCCCC
Q 013515 316 AILLDPSCS 324 (441)
Q Consensus 316 ~Il~DpPCS 324 (441)
.|+..+...
T Consensus 79 ~vi~~ag~~ 87 (276)
T PRK06482 79 VVVSNAGYG 87 (276)
T ss_pred EEEECCCCC
Confidence 999865543
No 450
>PRK07024 short chain dehydrogenase; Provisional
Probab=53.62 E-value=43 Score=31.44 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=51.1
Q ss_pred CEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCCc
Q 013515 243 WKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEV 314 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~f 314 (441)
.+|| +..|+|+.+..++..+.. ..+|+.+|.+++.++.+.+.+...+ ++.++..|+.+...- ....+.+
T Consensus 3 ~~vl-ItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 3 LKVF-ITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CEEE-EEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 3555 455688889998877643 3589999999888776665554332 677888888764311 0112457
Q ss_pred cEEEEcCC
Q 013515 315 RAILLDPS 322 (441)
Q Consensus 315 D~Il~DpP 322 (441)
|.++..+-
T Consensus 80 d~lv~~ag 87 (257)
T PRK07024 80 DVVIANAG 87 (257)
T ss_pred CEEEECCC
Confidence 99998664
No 451
>PRK06179 short chain dehydrogenase; Provisional
Probab=53.58 E-value=94 Score=29.26 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=45.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+..|+=.| |+|+.+.+++..+.. ..+|++++.++...+. ..++.++.+|..+...-. ..++.
T Consensus 4 ~~~vlVtG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 73 (270)
T PRK06179 4 SKVALVTG-ASSGIGRATAEKLARAGYRVFGTSRNPARAAP---------IPGVELLELDVTDDASVQAAVDEVIARAGR 73 (270)
T ss_pred CCEEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCChhhccc---------cCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence 44666555 678899998876643 3589999988655431 134667788887643110 11356
Q ss_pred ccEEEEcCCC
Q 013515 314 VRAILLDPSC 323 (441)
Q Consensus 314 fD~Il~DpPC 323 (441)
+|.++..+.-
T Consensus 74 ~d~li~~ag~ 83 (270)
T PRK06179 74 IDVLVNNAGV 83 (270)
T ss_pred CCEEEECCCC
Confidence 8999986643
No 452
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=53.45 E-value=41 Score=33.43 Aligned_cols=50 Identities=26% Similarity=0.300 Sum_probs=35.8
Q ss_pred hCCCCCCEEEEEcCCC-chHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCC
Q 013515 237 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292 (441)
Q Consensus 237 l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~ 292 (441)
..+++|++||=.|+|+ |..+.+++..++ .+|+++|.++++++.+++ +|.+
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG----FGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCc
Confidence 4567899999988755 444555666653 479999999998887643 5764
No 453
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=53.31 E-value=31 Score=33.86 Aligned_cols=116 Identities=13% Similarity=0.151 Sum_probs=67.4
Q ss_pred EcCCCchHHHHHHHHhcCC--cEEEEEeCCHHHHHHHHHHHHHhC-CCcE----EEEeccCCCCCCCCCCC--CCccEEE
Q 013515 248 ACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSG-AANI----EVLHGDFLNLDPKDPAY--SEVRAIL 318 (441)
Q Consensus 248 l~ag~G~kt~~la~~~~~~--~~V~a~D~~~~rl~~l~~~~~~~g-~~~v----~~~~~D~~~~~~~~~~~--~~fD~Il 318 (441)
+..|.|..+..+.+.+-.. .+|+.+|.++..+-.+++.+.... -.++ .++.+|+.+...-...+ ..+|.|+
T Consensus 3 VTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF 82 (293)
T ss_dssp EETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred EEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence 4567899999998876332 689999999999999999886432 1233 44578887654211111 3679998
Q ss_pred EcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEc
Q 013515 319 LDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVE-RVVYST 381 (441)
Q Consensus 319 ~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G-~lvYsT 381 (441)
-=+----....-. .-.+.+....--...+++.|... ... .+.-||
T Consensus 83 HaAA~KhVpl~E~-----------------~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~IST 128 (293)
T PF02719_consen 83 HAAALKHVPLMED-----------------NPFEAVKTNVLGTQNVAEAAIEH-GVERFVFIST 128 (293)
T ss_dssp E------HHHHCC-----------------CHHHHHHHHCHHHHHHHHHHHHT-T-SEEEEEEE
T ss_pred EChhcCCCChHHh-----------------CHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccc
Confidence 6544222111111 12466777777888899998875 334 444444
No 454
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=53.25 E-value=7.2 Score=23.16 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCCCcCCccccccCC
Q 013515 1 MARTKTAATAPSGASAKTSRNGRL 24 (441)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (441)
|+....|.|||+.--+.+||++|-
T Consensus 1 masstpaspapsdils~~pqs~rp 24 (29)
T PF05570_consen 1 MASSTPASPAPSDILSSKPQSKRP 24 (29)
T ss_pred CCcCCCCCCCcHHHHhcCccccCC
Confidence 677777889999888888888763
No 455
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.95 E-value=1.4e+02 Score=27.60 Aligned_cols=81 Identities=10% Similarity=0.033 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEe-CCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACE-LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D-~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
+.+||=.| |+|+.+.+++..+.. ...|+... .+..........++..+. ++.++..|..+..... ....
T Consensus 6 ~~~vlitG-asg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 6 DKVVVVTG-SGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGG-EGIGVLADVSTREGCETLAKATIDRYG 83 (252)
T ss_pred CcEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCC-eeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence 56788555 678888888876643 34555443 444555544445555553 4556777776543110 0124
Q ss_pred CccEEEEcCCCC
Q 013515 313 EVRAILLDPSCS 324 (441)
Q Consensus 313 ~fD~Il~DpPCS 324 (441)
.+|.|+..+...
T Consensus 84 ~~d~vi~~ag~~ 95 (252)
T PRK06077 84 VADILVNNAGLG 95 (252)
T ss_pred CCCEEEECCCCC
Confidence 679999977653
No 456
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=52.56 E-value=6.7 Score=40.83 Aligned_cols=79 Identities=16% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC----CCCCCCCCccEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD----PKDPAYSEVRAI 317 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~----~~~~~~~~fD~I 317 (441)
+..+|-+|-|.|+....+-..++. ..++|+++++.+++.+..++....-....+...|..... ........||++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~-~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPK-FQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred cCcEEEEecCCCccccceeeecCc-cceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Q ss_pred EEcC
Q 013515 318 LLDP 321 (441)
Q Consensus 318 l~Dp 321 (441)
++|.
T Consensus 375 ~~dv 378 (482)
T KOG2352|consen 375 MVDV 378 (482)
T ss_pred EEEC
No 457
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=52.48 E-value=22 Score=36.29 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=49.9
Q ss_pred CEEEEEcCCCchHHHHHHHHh-cC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 243 WKVLDACSAPGNKTVHLAALM-KG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~-~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
.+||=+|| |+.+..++..+ .+ .++|+..|.+.+.+.++..... .++++...|+.+.+....-...+|.|+.=
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 36777888 66666665553 22 2699999999998888766542 26788888888765322112456888776
Q ss_pred CC
Q 013515 321 PS 322 (441)
Q Consensus 321 pP 322 (441)
.|
T Consensus 76 ~p 77 (389)
T COG1748 76 AP 77 (389)
T ss_pred CC
Confidence 66
No 458
>PRK06701 short chain dehydrogenase; Provisional
Probab=52.26 E-value=1.4e+02 Score=28.74 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCH-HHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNK-ERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAY 311 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~-~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~ 311 (441)
.|.+||=.| |+|+.+..++..+. ...+|+.++.+. ..++.....++..|. ++.++..|+.+..... ..+
T Consensus 45 ~~k~iLItG-asggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITG-GDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 366777555 57778888877663 336788888774 345555555555553 5778888887643211 012
Q ss_pred CCccEEEEcCC
Q 013515 312 SEVRAILLDPS 322 (441)
Q Consensus 312 ~~fD~Il~DpP 322 (441)
..+|.|+..+.
T Consensus 123 ~~iD~lI~~Ag 133 (290)
T PRK06701 123 GRLDILVNNAA 133 (290)
T ss_pred CCCCEEEECCc
Confidence 46799988664
No 459
>PRK05855 short chain dehydrogenase; Validated
Probab=52.24 E-value=1.1e+02 Score=32.20 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=57.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYSE 313 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~~ 313 (441)
+.++| +-.|+|+.+.+++..+. ...+|+.++.+...++.+.+.++..|. ++.++..|..+...-. ..++.
T Consensus 315 ~~~~l-v~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 315 GKLVV-VTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CCEEE-EECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 55677 55558888988887764 335799999999888888777777664 6788888987754210 11356
Q ss_pred ccEEEEcCCCCC
Q 013515 314 VRAILLDPSCSG 325 (441)
Q Consensus 314 fD~Il~DpPCSg 325 (441)
+|.++..+-...
T Consensus 393 id~lv~~Ag~~~ 404 (582)
T PRK05855 393 PDIVVNNAGIGM 404 (582)
T ss_pred CcEEEECCccCC
Confidence 899998775443
No 460
>PLN02572 UDP-sulfoquinovose synthase
Probab=52.09 E-value=73 Score=33.12 Aligned_cols=80 Identities=18% Similarity=0.119 Sum_probs=46.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHH-----------------HHHHHHHHHHhCCCcEEEEeccCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKER-----------------VRRLKDTIKLSGAANIEVLHGDFLN 303 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~r-----------------l~~l~~~~~~~g~~~v~~~~~D~~~ 303 (441)
+.+|| +..|+|+.+.++++.+.. ...|+++|....+ .+.+.. +....-.+++++.+|..+
T Consensus 47 ~k~VL-VTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~v~~v~~Dl~d 124 (442)
T PLN02572 47 KKKVM-VIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRR-WKEVSGKEIELYVGDICD 124 (442)
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHH-HHHhhCCcceEEECCCCC
Confidence 56777 678899999999987743 3589998842110 011111 111111357888999876
Q ss_pred CCCCCCCC--CCccEEEEcCCC
Q 013515 304 LDPKDPAY--SEVRAILLDPSC 323 (441)
Q Consensus 304 ~~~~~~~~--~~fD~Il~DpPC 323 (441)
...-...+ ..+|.|+--+-.
T Consensus 125 ~~~v~~~l~~~~~D~ViHlAa~ 146 (442)
T PLN02572 125 FEFLSEAFKSFEPDAVVHFGEQ 146 (442)
T ss_pred HHHHHHHHHhCCCCEEEECCCc
Confidence 43211001 247999986643
No 461
>PLN02540 methylenetetrahydrofolate reductase
Probab=51.97 E-value=36 Score=36.55 Aligned_cols=63 Identities=25% Similarity=0.277 Sum_probs=52.5
Q ss_pred CCEEEEEcCCCch----HHHHHHHHhcCC------cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 013515 242 GWKVLDACSAPGN----KTVHLAALMKGK------GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL 304 (441)
Q Consensus 242 g~~VLDl~ag~G~----kt~~la~~~~~~------~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~ 304 (441)
+-..+|+.-|.|| +|+.++..+.+. -+++|.|.+...++..-..+..+|+.||-.+.||....
T Consensus 28 ~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~ 100 (565)
T PLN02540 28 GPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPPHG 100 (565)
T ss_pred CCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 4578999999998 577777766543 48899999999999999999999999999999998643
No 462
>PRK12742 oxidoreductase; Provisional
Probab=51.54 E-value=69 Score=29.40 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=43.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC-cEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC---CCCCCCCcc
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGK-GKIVACEL-NKERVRRLKDTIKLSGAANIEVLHGDFLNLDP---KDPAYSEVR 315 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a~D~-~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~---~~~~~~~fD 315 (441)
.|.+|| +-.|+|+.+..+++.+... .+|+.... +++.++.+. +..+ +.++..|..+... ....++.+|
T Consensus 5 ~~k~vl-ItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~---~~~~---~~~~~~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 5 TGKKVL-VLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLA---QETG---ATAVQTDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCCEEE-EECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHH---HHhC---CeEEecCCCCHHHHHHHHHHhCCCc
Confidence 366777 5566888899888876443 47776654 445444432 2333 3455667654321 001135689
Q ss_pred EEEEcCCC
Q 013515 316 AILLDPSC 323 (441)
Q Consensus 316 ~Il~DpPC 323 (441)
.++..+..
T Consensus 78 ~li~~ag~ 85 (237)
T PRK12742 78 ILVVNAGI 85 (237)
T ss_pred EEEECCCC
Confidence 98876643
No 463
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=51.50 E-value=2.1e+02 Score=27.32 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=43.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHh-cCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~-~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
..+.+|+=+|+| +.+..++..+ ....+|+.++.++++.+.+.+.+...|. +.....+ +. . ...+|+|+
T Consensus 115 ~~~k~vliiGaG--g~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~--~~~~~~~--~~--~---~~~~DivI 183 (270)
T TIGR00507 115 RPNQRVLIIGAG--GAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGE--IQAFSMD--EL--P---LHRVDLII 183 (270)
T ss_pred ccCCEEEEEcCc--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCc--eEEechh--hh--c---ccCccEEE
Confidence 346788888875 5555554433 2234888899998888877776655442 2222111 11 1 13579988
Q ss_pred EcCCCCCCcc
Q 013515 319 LDPSCSGSGT 328 (441)
Q Consensus 319 ~DpPCSg~G~ 328 (441)
. |++.|+
T Consensus 184 n---atp~gm 190 (270)
T TIGR00507 184 N---ATSAGM 190 (270)
T ss_pred E---CCCCCC
Confidence 7 444554
No 464
>PLN02686 cinnamoyl-CoA reductase
Probab=51.25 E-value=1.1e+02 Score=30.77 Aligned_cols=77 Identities=8% Similarity=0.102 Sum_probs=45.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCCCCCC
Q 013515 240 KPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDPKDPAYSE 313 (441)
Q Consensus 240 ~~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~~~~ 313 (441)
..+.+|| +..|+|+.+.++++.+.. ..+|+++..+....+.+++ +...+ -..+.++.+|..+...-...+..
T Consensus 51 ~~~k~VL-VTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~-l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~ 128 (367)
T PLN02686 51 AEARLVC-VTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLRE-MEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG 128 (367)
T ss_pred CCCCEEE-EECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence 3467788 666789999999886643 3478776666555444422 21111 12477888898775421111234
Q ss_pred ccEEE
Q 013515 314 VRAIL 318 (441)
Q Consensus 314 fD~Il 318 (441)
+|.|+
T Consensus 129 ~d~V~ 133 (367)
T PLN02686 129 CAGVF 133 (367)
T ss_pred ccEEE
Confidence 67776
No 465
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=50.46 E-value=16 Score=34.18 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=65.9
Q ss_pred CEEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
-++||+||=+..-..... +--.|+++|+++. .-.+...||.+.+......++||+|.
T Consensus 53 lrlLEVGals~~N~~s~~----~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs---- 109 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS----GWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVIS---- 109 (219)
T ss_pred ceEEeecccCCCCccccc----CceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEE----
Confidence 489999998665433222 2346999999851 12367889998764322247899996
Q ss_pred CCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCC-CcE-----EEEE---cCCCC-ChhcHHH
Q 013515 323 CSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG-VER-----VVYS---TCSIH-QVENEDV 392 (441)
Q Consensus 323 CSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~-~G~-----lvYs---TCS~~-~~ENe~v 392 (441)
||= ++-=-|+. + .--++|.++.++|+ +|. |.-. .|--+ .--+++.
T Consensus 110 ~SL--VLNfVP~p----------------~-------~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~ 164 (219)
T PF11968_consen 110 LSL--VLNFVPDP----------------K-------QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEER 164 (219)
T ss_pred EEE--EEeeCCCH----------------H-------HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHH
Confidence 331 11111221 1 11478899999887 465 3322 34322 2334556
Q ss_pred HHHHhchhcCCCeEEec
Q 013515 393 IKSVLPIAMSFGFQLAT 409 (441)
Q Consensus 393 V~~~l~~~~~~~~~~~~ 409 (441)
...+++ ..||+.+.
T Consensus 165 l~~im~---~LGf~~~~ 178 (219)
T PF11968_consen 165 LREIME---SLGFTRVK 178 (219)
T ss_pred HHHHHH---hCCcEEEE
Confidence 666653 46776644
No 466
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=50.16 E-value=1.1e+02 Score=33.80 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=54.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHH-hCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKL-SGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~-~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+|| +..|+|+.+..++..+. ...+|+.+|.+...++.+.+.+.. .+...+..+..|+.+...-. ..++
T Consensus 414 gkvvL-VTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g 492 (676)
T TIGR02632 414 RRVAF-VTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYG 492 (676)
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 56677 55667888988887663 346899999998888776655543 34345677888887643110 1235
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.|+..+..
T Consensus 493 ~iDilV~nAG~ 503 (676)
T TIGR02632 493 GVDIVVNNAGI 503 (676)
T ss_pred CCcEEEECCCC
Confidence 68999887654
No 467
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=50.00 E-value=2.2e+02 Score=26.56 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=51.2
Q ss_pred EEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCCCcc
Q 013515 244 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYSEVR 315 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~~fD 315 (441)
+||=.| |+|+.+..++..+. ...+|+.++.++..++.+.+.++..+ ++.++..|..+...- ...++.+|
T Consensus 2 ~vlItG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTA-SSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG--EVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEc-CCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 455455 45778888877653 33689999999988888777776544 567788888753311 01235789
Q ss_pred EEEEcCC
Q 013515 316 AILLDPS 322 (441)
Q Consensus 316 ~Il~DpP 322 (441)
.++..+.
T Consensus 79 ~li~naG 85 (259)
T PRK08340 79 ALVWNAG 85 (259)
T ss_pred EEEECCC
Confidence 9988764
No 468
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=49.76 E-value=81 Score=29.53 Aligned_cols=80 Identities=8% Similarity=0.136 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.|.+||=.|+ +|+.+..+++.+. ...+|+.++.+ ...+.+.+.+...+ .++.++..|..+..... ..++
T Consensus 14 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 14 DGKVAIVTGG-NTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG-RKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3667775555 6777888877663 33578888877 55566666666555 35778888887644210 1124
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.++..+..
T Consensus 91 ~id~li~~ag~ 101 (258)
T PRK06935 91 KIDILVNNAGT 101 (258)
T ss_pred CCCEEEECCCC
Confidence 68999886643
No 469
>PRK06398 aldose dehydrogenase; Validated
Probab=48.91 E-value=61 Score=30.54 Aligned_cols=70 Identities=6% Similarity=0.118 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
.|.+||=.| |+|+.+..++..+. ...+|+.++.+.... .++.++..|..+...- ...++
T Consensus 5 ~gk~vlItG-as~gIG~~ia~~l~~~G~~Vi~~~r~~~~~------------~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 71 (258)
T PRK06398 5 KDKVAIVTG-GSQGIGKAVVNRLKEEGSNVINFDIKEPSY------------NDVDYFKVDVSNKEQVIKGIDYVISKYG 71 (258)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCcccc------------CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 366777666 57778888887764 335898888775321 2467778888764311 01235
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.|+..+..
T Consensus 72 ~id~li~~Ag~ 82 (258)
T PRK06398 72 RIDILVNNAGI 82 (258)
T ss_pred CCCEEEECCCC
Confidence 68999986643
No 470
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=48.63 E-value=70 Score=30.97 Aligned_cols=110 Identities=17% Similarity=0.224 Sum_probs=64.1
Q ss_pred cCCCchHHHHHHHHhcCCc---EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC-CC
Q 013515 249 CSAPGNKTVHLAALMKGKG---KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS-CS 324 (441)
Q Consensus 249 ~ag~G~kt~~la~~~~~~~---~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP-CS 324 (441)
.-|+|..+.++.+.+-..+ .|.++|+.+.... .......+ ...++.+|..+...-..-...+|.|+--+. .+
T Consensus 3 TGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~--~~~~~~~~--~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 3 TGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF--LKDLQKSG--VKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred EcCCcHHHHHHHHHHHHCCCceEEEEccccccccc--chhhhccc--ceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 4689999999988765545 7888897754322 11222222 334888998875432222356788887543 22
Q ss_pred CCcccccccCccCCCCCCCCCCCcccHH-HHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 013515 325 GSGTAAERLDHLLPSHASGHTADPTEME-RLNKLSAFQKKALRHALSFPGVERVVYSTCS 383 (441)
Q Consensus 325 g~G~~~~~pd~~~~~~~~~~~~~~~~~~-~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS 383 (441)
..| . ...+ -..-...--+.+|+.|.+. ...++||++..
T Consensus 79 ~~~---~-----------------~~~~~~~~vNV~GT~nvl~aa~~~-~VkrlVytSS~ 117 (280)
T PF01073_consen 79 PWG---D-----------------YPPEEYYKVNVDGTRNVLEAARKA-GVKRLVYTSSI 117 (280)
T ss_pred ccC---c-----------------ccHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcCc
Confidence 212 0 0122 2334556667888887653 45788887654
No 471
>PRK06141 ornithine cyclodeaminase; Validated
Probab=48.53 E-value=1.1e+02 Score=30.26 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=44.9
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHH-hcCCcEEEEEeCCHHHHHHHHHHHHHhCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL-MKGKGKIVACELNKERVRRLKDTIKLSGA 291 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~-~~~~~~V~a~D~~~~rl~~l~~~~~~~g~ 291 (441)
.|.+++.+|......+|+-+|+|.=+.....+-. +.+..+|+.++.++++.+.+.+.++..|.
T Consensus 112 ~sala~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~ 175 (314)
T PRK06141 112 ASALAASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGF 175 (314)
T ss_pred HHHHHHHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCC
Confidence 4778888888777889988887655554432212 23446899999999999988888776554
No 472
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.27 E-value=2e+02 Score=26.76 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=49.0
Q ss_pred CCEEEEEcCCC-chHHHHHHHHhcC-CcEEEEEeCC------------HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 013515 242 GWKVLDACSAP-GNKTVHLAALMKG-KGKIVACELN------------KERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 242 g~~VLDl~ag~-G~kt~~la~~~~~-~~~V~a~D~~------------~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 307 (441)
|..||=.|++. |+.+..++..+.. ...|+.++.+ ..... +...++..+. ++.++..|+.+....
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGV-RCEHMEIDLSQPYAP 82 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCC-eEEEEECCCCCHHHH
Confidence 56788777764 6888888877643 3488888765 22322 4444444453 577888888764321
Q ss_pred -------CCCCCCccEEEEcCC
Q 013515 308 -------DPAYSEVRAILLDPS 322 (441)
Q Consensus 308 -------~~~~~~fD~Il~DpP 322 (441)
...++.+|.|+..+.
T Consensus 83 ~~~~~~~~~~~g~id~vi~~ag 104 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNAA 104 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECCC
Confidence 012356899887653
No 473
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.09 E-value=1.1e+02 Score=28.87 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=48.6
Q ss_pred CCCEEEEEcCC-CchHHHHHHHHhcC-CcEEEEEeCCH--HHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CC
Q 013515 241 PGWKVLDACSA-PGNKTVHLAALMKG-KGKIVACELNK--ERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DP 309 (441)
Q Consensus 241 ~g~~VLDl~ag-~G~kt~~la~~~~~-~~~V~a~D~~~--~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~ 309 (441)
.|..+|=.|+| ++|.+..+++.+.. ..+|+..+.+. +.++.+.+ ..+- .+.++..|+.+...- ..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~---~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAK---RLPE-PAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHH---hcCC-CCcEEeCCCCCHHHHHHHHHHHHH
Confidence 36788888886 78899988876643 35888888653 33443333 2332 455677787764311 01
Q ss_pred CCCCccEEEEcCC
Q 013515 310 AYSEVRAILLDPS 322 (441)
Q Consensus 310 ~~~~fD~Il~DpP 322 (441)
.++.+|.++.++.
T Consensus 82 ~~g~iD~li~nAG 94 (256)
T PRK07889 82 HVDGLDGVVHSIG 94 (256)
T ss_pred HcCCCcEEEEccc
Confidence 2367899988653
No 474
>PRK07069 short chain dehydrogenase; Validated
Probab=47.92 E-value=1.4e+02 Score=27.48 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=45.7
Q ss_pred cCCCchHHHHHHHHhcC-CcEEEEEeCC-HHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC-------CCCCCCccEEE
Q 013515 249 CSAPGNKTVHLAALMKG-KGKIVACELN-KERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK-------DPAYSEVRAIL 318 (441)
Q Consensus 249 ~ag~G~kt~~la~~~~~-~~~V~a~D~~-~~rl~~l~~~~~~~g~-~~v~~~~~D~~~~~~~-------~~~~~~fD~Il 318 (441)
..|+|+.+.++++.+.. ..+|+.++.+ .+.++.+.+.+..... ..+..+..|+.+...- ...++..|.|+
T Consensus 5 tG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 84 (251)
T PRK07069 5 TGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLSVLV 84 (251)
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCccEEE
Confidence 34578888888876643 3589999987 7777777666654322 2344566777653311 01134679998
Q ss_pred EcCC
Q 013515 319 LDPS 322 (441)
Q Consensus 319 ~DpP 322 (441)
..+.
T Consensus 85 ~~ag 88 (251)
T PRK07069 85 NNAG 88 (251)
T ss_pred ECCC
Confidence 7653
No 475
>PRK08264 short chain dehydrogenase; Validated
Probab=47.87 E-value=1e+02 Score=28.22 Aligned_cols=72 Identities=21% Similarity=0.205 Sum_probs=46.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCCc--EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CCCCCCccE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGKG--KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DPAYSEVRA 316 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~~--~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~---~~~~~~fD~ 316 (441)
+.+||= -.|+|+.+.+++..+...| +|++++.+++.+.. .+ .++.++.+|..+...- ......+|.
T Consensus 6 ~~~vlI-tGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~~-~~~~~~~~D~~~~~~~~~~~~~~~~id~ 76 (238)
T PRK08264 6 GKVVLV-TGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------LG-PRVVPLQLDVTDPASVAAAAEAASDVTI 76 (238)
T ss_pred CCEEEE-ECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-------cC-CceEEEEecCCCHHHHHHHHHhcCCCCE
Confidence 456664 4468989999888765433 89999988766543 23 3577888888764321 111245788
Q ss_pred EEEcCC
Q 013515 317 ILLDPS 322 (441)
Q Consensus 317 Il~DpP 322 (441)
|+..+.
T Consensus 77 vi~~ag 82 (238)
T PRK08264 77 LVNNAG 82 (238)
T ss_pred EEECCC
Confidence 887653
No 476
>PRK07806 short chain dehydrogenase; Provisional
Probab=47.79 E-value=90 Score=28.87 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=49.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCH-HHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNK-ERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~-~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+||-.| |+|+.+.+++..+.. ..+|++++.+. ..++.+...++..+. ++.++.+|..+..... ..++
T Consensus 6 ~k~vlItG-asggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 6 GKTALVTG-SSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG-RASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CcEEEEEC-CCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 56777555 577888888876543 34788887764 455555555555453 5777888987643210 1124
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.+|.|+..+.
T Consensus 84 ~~d~vi~~ag 93 (248)
T PRK07806 84 GLDALVLNAS 93 (248)
T ss_pred CCcEEEECCC
Confidence 6899888764
No 477
>PRK06484 short chain dehydrogenase; Validated
Probab=47.73 E-value=1.1e+02 Score=32.13 Aligned_cols=78 Identities=8% Similarity=0.157 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
.|..+| +..|+|+.+..++..+.. ..+|+.++.++..++.+.+.+ +. .+..+..|+.+...- ...++
T Consensus 268 ~~k~~l-ItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 268 SPRVVA-ITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL---GD-EHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CC-ceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 466777 555577888888876643 358999999988877665433 43 345667787764311 01235
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.++..+..
T Consensus 343 ~id~li~nAg~ 353 (520)
T PRK06484 343 RLDVLVNNAGI 353 (520)
T ss_pred CCCEEEECCCC
Confidence 78999987643
No 478
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=47.72 E-value=58 Score=28.62 Aligned_cols=99 Identities=11% Similarity=0.147 Sum_probs=56.0
Q ss_pred CCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCCCCCCccc
Q 013515 251 APGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 329 (441)
Q Consensus 251 g~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpPCSg~G~~ 329 (441)
|.|..+..|+..+. ..-.|++.|+++++++.+.+. | ++ ...+..+.. ...|+|++-.|-
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g---~~-~~~s~~e~~------~~~dvvi~~v~~------ 67 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----G---AE-VADSPAEAA------EQADVVILCVPD------ 67 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----T---EE-EESSHHHHH------HHBSEEEE-SSS------
T ss_pred chHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----h---hh-hhhhhhhHh------hcccceEeeccc------
Confidence 56777777777653 346899999999888876543 3 22 222332222 345889875551
Q ss_pred ccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHH--HhCCCCCcEEEEEcCCCCChhcHHHHHHHh
Q 013515 330 AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRH--ALSFPGVERVVYSTCSIHQVENEDVIKSVL 397 (441)
Q Consensus 330 ~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~--a~~~~~~G~lvYsTCS~~~~ENe~vV~~~l 397 (441)
.+.+ +.++.. .+..++.|.++.-+.|+.|++..++-+.+-
T Consensus 68 ---------------------~~~v-------~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~ 109 (163)
T PF03446_consen 68 ---------------------DDAV-------EAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLA 109 (163)
T ss_dssp ---------------------HHHH-------HHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHH
T ss_pred ---------------------chhh-------hhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhh
Confidence 1222 233333 444456687777888888888877776654
No 479
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=47.68 E-value=32 Score=28.19 Aligned_cols=55 Identities=22% Similarity=0.134 Sum_probs=32.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEc
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD 320 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~D 320 (441)
+|| +|||.|..|..++.. +++.++..|++ +.+...+..++..... ...+|+|++-
T Consensus 3 kIL-lvCg~G~STSlla~k-------------------~k~~~~e~gi~-~~i~a~~~~e~~~~~~-~~~~DvIll~ 57 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK-------------------TTEYLKEQGKD-IEVDAITATEGEKAIA-AAEYDLYLVS 57 (104)
T ss_pred EEE-EECCCchHHHHHHHH-------------------HHHHHHHCCCc-eEEEEecHHHHHHhhc-cCCCCEEEEC
Confidence 455 789999877765554 34455667774 5666665554432210 1357888763
No 480
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.25 E-value=2.1e+02 Score=25.99 Aligned_cols=79 Identities=11% Similarity=0.208 Sum_probs=48.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcCC-cEEEE-EeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKGK-GKIVA-CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~~-~~V~a-~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
..+||= -.|+|+.+.+++..+... ..|+. ...+....+.+.......+ .++.++..|..+...-. ....
T Consensus 6 ~~~vlI-tGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 83 (249)
T PRK12825 6 GRVALV-TGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALG-RRAQAVQADVTDKAALEAAVAAAVERFG 83 (249)
T ss_pred CCEEEE-eCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC-CceEEEECCcCCHHHHHHHHHHHHHHcC
Confidence 457774 446899999998765332 35544 4445556666666555554 35778888887644110 0124
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
.+|.|+..+.
T Consensus 84 ~id~vi~~ag 93 (249)
T PRK12825 84 RIDILVNNAG 93 (249)
T ss_pred CCCEEEECCc
Confidence 6799988555
No 481
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=47.13 E-value=1.5e+02 Score=30.22 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=26.4
Q ss_pred CCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHH
Q 013515 251 APGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284 (441)
Q Consensus 251 g~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~ 284 (441)
|.|..++.+|..+..+..|+++|+++++++.+++
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 6677777766655444689999999999998876
No 482
>PRK07340 ornithine cyclodeaminase; Validated
Probab=47.03 E-value=1.2e+02 Score=29.87 Aligned_cols=85 Identities=13% Similarity=0.009 Sum_probs=55.4
Q ss_pred hhHHHHHHhCCCCCCEEEEEcCCCchHHHHHHHH-hcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 013515 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL-MKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK 307 (441)
Q Consensus 229 ss~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~-~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~ 307 (441)
.|.+++.+|......+|+-+|||.=+.....+-. ..+..+|+.++.++++.+.+.+.++..++. +...|....
T Consensus 112 ~sala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~---~~~~~~~~a--- 185 (304)
T PRK07340 112 VSLLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPT---AEPLDGEAI--- 185 (304)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCe---eEECCHHHH---
Confidence 4778888887777889998888766655443332 234468999999999999888888755432 222222211
Q ss_pred CCCCCCccEEEEcCC
Q 013515 308 DPAYSEVRAILLDPS 322 (441)
Q Consensus 308 ~~~~~~fD~Il~DpP 322 (441)
....|+|+.--|
T Consensus 186 ---v~~aDiVitaT~ 197 (304)
T PRK07340 186 ---PEAVDLVVTATT 197 (304)
T ss_pred ---hhcCCEEEEccC
Confidence 145788876433
No 483
>CHL00194 ycf39 Ycf39; Provisional
Probab=46.90 E-value=71 Score=31.26 Aligned_cols=68 Identities=19% Similarity=0.173 Sum_probs=43.6
Q ss_pred EEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEE
Q 013515 244 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILL 319 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~ 319 (441)
+|| +..|+|..+.++++.+. ..-+|+++..+++....+ ... +++++.+|..+...-...+..+|.|+.
T Consensus 2 kIl-VtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l----~~~---~v~~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 2 SLL-VIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL----KEW---GAELVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred EEE-EECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH----hhc---CCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence 455 56789999999987653 335899999886543322 122 467888998764321111245788886
No 484
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.62 E-value=70 Score=31.25 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~-v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|..|+=-||.+| .+.++|..+.. ..+++-+-...++++...+.++..+..+ +.++..|..+...-. ..++
T Consensus 12 ~kvVvITGASsG-IG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg 90 (282)
T KOG1205|consen 12 GKVVLITGASSG-IGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG 90 (282)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence 667776666554 56666655433 3567777888999999988888887655 889999998765321 2467
Q ss_pred CccEEEEcCCCCC
Q 013515 313 EVRAILLDPSCSG 325 (441)
Q Consensus 313 ~fD~Il~DpPCSg 325 (441)
..|+.+.++--+-
T Consensus 91 ~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 91 RVDVLVNNAGISL 103 (282)
T ss_pred CCCEEEecCcccc
Confidence 8999999988665
No 485
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=46.61 E-value=1.8e+02 Score=24.73 Aligned_cols=72 Identities=24% Similarity=0.239 Sum_probs=42.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC--cEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~~--~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.+.+|+-+|+ |+.+..++..+... ..|+.+|.++++.+.+.+.+...+ +.....|..+. ...+|+|+
T Consensus 18 ~~~~i~iiG~--G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~Dvvi 86 (155)
T cd01065 18 KGKKVLILGA--GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG---IAIAYLDLEEL------LAEADLII 86 (155)
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc---cceeecchhhc------cccCCEEE
Confidence 4678888876 56666666654332 479999999888776655443211 11112222211 25679999
Q ss_pred EcCCC
Q 013515 319 LDPSC 323 (441)
Q Consensus 319 ~DpPC 323 (441)
+-.|-
T Consensus 87 ~~~~~ 91 (155)
T cd01065 87 NTTPV 91 (155)
T ss_pred eCcCC
Confidence 86653
No 486
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=46.35 E-value=27 Score=37.53 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=44.7
Q ss_pred CCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCCCccEEEEcCC
Q 013515 250 SAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVRAILLDPS 322 (441)
Q Consensus 250 ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~-~~~~~~~fD~Il~DpP 322 (441)
||.|..+.++++.+.. ...++.+|.++++++.+++ .| ..++.+|+.+..- .....++.|.+++.-+
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g---~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RG---IRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CC---CeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 5666667777877643 3589999999999888764 34 4688899987431 1112357787776443
No 487
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=46.30 E-value=71 Score=28.82 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHH
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIK 287 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~ 287 (441)
.+.+|+=+| |+|+.+..++..+. ...+|+.++.+.++++.+.+.+.
T Consensus 27 ~~~~vlVlG-gtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~ 73 (194)
T cd01078 27 KGKTAVVLG-GTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLR 73 (194)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence 466777554 45776666655443 23588889999888877766654
No 488
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=46.22 E-value=18 Score=29.52 Aligned_cols=66 Identities=9% Similarity=0.112 Sum_probs=39.6
Q ss_pred CccEEEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC-CC-ChhcH
Q 013515 313 EVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCS-IH-QVENE 390 (441)
Q Consensus 313 ~fD~Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~G~lvYsTCS-~~-~~ENe 390 (441)
+||+|+-+||........... .....-..+..-.+..+++++ +|.+.|.|=+ +. ..+.-
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~------------------~~~~~~~dlY~~Fie~~~~ll-~G~~~~I~P~~~l~~~~~~ 62 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKK------------------KKKKKKSDLYILFIEKSLNLL-NGYLSFITPNSFLKSGKYG 62 (106)
T ss_pred CcCEEEECCCChhhccccchh------------------hcccccCcHHHHHHHHHHHHh-CCeEEEEeChHHhCcCchH
Confidence 589999999986654321100 000013345556778888877 7888776543 33 45566
Q ss_pred HHHHHHh
Q 013515 391 DVIKSVL 397 (441)
Q Consensus 391 ~vV~~~l 397 (441)
....++|
T Consensus 63 ~~lR~~l 69 (106)
T PF07669_consen 63 KKLRKFL 69 (106)
T ss_pred HHHHHHH
Confidence 6666666
No 489
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=46.19 E-value=29 Score=37.87 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=43.8
Q ss_pred CEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCCCccEEEE
Q 013515 243 WKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVRAILL 319 (441)
Q Consensus 243 ~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~-~~~~~~~fD~Il~ 319 (441)
.+|+=+|+ |..+..+++.+.. ...++++|.|+++++.+++ .| ..++.+|+.+... .....++.|.|++
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g---~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG---MKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC---CeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 45655555 4455556665543 3589999999999998865 35 3578899987641 1112356777776
No 490
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=46.17 E-value=51 Score=32.57 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=44.1
Q ss_pred EcCCCchHHHHHHHHhcC-CcEEEEEeCCHH-----HHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC--CCccEEEE
Q 013515 248 ACSAPGNKTVHLAALMKG-KGKIVACELNKE-----RVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY--SEVRAILL 319 (441)
Q Consensus 248 l~ag~G~kt~~la~~~~~-~~~V~a~D~~~~-----rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~--~~fD~Il~ 319 (441)
+..|+|..+.++++.+.. ..+|+++|.++. .+..+........-.+++++.+|..+...-...+ ..+|.|+-
T Consensus 5 VTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH 84 (343)
T TIGR01472 5 ITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPTEIYN 84 (343)
T ss_pred EEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCCEEEE
Confidence 566789999999887643 348999987653 2222211110000124788889987654211001 14699988
Q ss_pred cCCCC
Q 013515 320 DPSCS 324 (441)
Q Consensus 320 DpPCS 324 (441)
-+-.+
T Consensus 85 ~Aa~~ 89 (343)
T TIGR01472 85 LAAQS 89 (343)
T ss_pred CCccc
Confidence 66543
No 491
>PRK05872 short chain dehydrogenase; Provisional
Probab=45.90 E-value=1.5e+02 Score=28.58 Aligned_cols=80 Identities=13% Similarity=0.199 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------CCCC
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
.|.+||= ..|+|+.+..++..+.. ..+|+.++.+++.++.+.+.+.. + ..+..+..|+.+..... ..++
T Consensus 8 ~gk~vlI-tGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVV-TGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-D-DRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEE-ECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4677884 45667888888877643 35899999998887766554431 2 23455567877543110 1135
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.|+.++.-
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 68999987753
No 492
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.71 E-value=1.8e+02 Score=28.22 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=50.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCC-HHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELN-KERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~-~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-------~~~~~ 312 (441)
|.++| +..|+|+.+..++..+. ...+|+.+|.+ ...++.+.+.++..|. ++.++..|+.+.... .. ++
T Consensus 12 ~k~~l-VTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dv~d~~~~~~~~~~~~~-~g 88 (306)
T PRK07792 12 GKVAV-VTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGA-KAVAVAGDISQRATADELVATAVG-LG 88 (306)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHH-hC
Confidence 56677 55556778888877663 33588888874 4556666666665553 577788888764211 11 35
Q ss_pred CccEEEEcCCC
Q 013515 313 EVRAILLDPSC 323 (441)
Q Consensus 313 ~fD~Il~DpPC 323 (441)
.+|.++..+.-
T Consensus 89 ~iD~li~nAG~ 99 (306)
T PRK07792 89 GLDIVVNNAGI 99 (306)
T ss_pred CCCEEEECCCC
Confidence 78999886643
No 493
>PRK05854 short chain dehydrogenase; Provisional
Probab=45.50 E-value=2.8e+02 Score=27.00 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=54.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCCC-------CCCC
Q 013515 242 GWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKD-------PAYS 312 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~~~g-~~~v~~~~~D~~~~~~~~-------~~~~ 312 (441)
|.+++ +..|+||.+..++..+. ...+|+.++.+.++.+.+.+.+.... -.++.++..|..+...-. ..++
T Consensus 14 gk~~l-ITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAV-VTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 55666 55557888888887664 34689999999888887777665432 235778888987654210 1235
Q ss_pred CccEEEEcCC
Q 013515 313 EVRAILLDPS 322 (441)
Q Consensus 313 ~fD~Il~DpP 322 (441)
..|.++.++.
T Consensus 93 ~iD~li~nAG 102 (313)
T PRK05854 93 PIHLLINNAG 102 (313)
T ss_pred CccEEEECCc
Confidence 6899998764
No 494
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.46 E-value=74 Score=30.80 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=26.8
Q ss_pred EEEEEcCCCchHHHHHHHHhc-CCcEEEEEeCCHHHHHHHHHHHH
Q 013515 244 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIK 287 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~-~~~~V~a~D~~~~rl~~l~~~~~ 287 (441)
+|.=+|+| ..+..+|..+. ....|+.+|++++.++.+.+.+.
T Consensus 3 ~V~VIG~G--~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~ 45 (288)
T PRK09260 3 KLVVVGAG--VMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIA 45 (288)
T ss_pred EEEEECcc--HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH
Confidence 34445554 44444554432 23579999999999998876543
No 495
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=45.20 E-value=46 Score=34.38 Aligned_cols=74 Identities=24% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHhcC-CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCCCccEEEE
Q 013515 242 GWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVRAILL 319 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~~~-~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~-~~~~~~fD~Il~ 319 (441)
..+|+=+|+ |..+..+++.+.. ...|+.+|.++++++.+++.. .++.++.+|+.+...- ......+|.|++
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----PNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 456775555 6677777776643 468999999999988776642 2456788998754311 111357888887
Q ss_pred cCC
Q 013515 320 DPS 322 (441)
Q Consensus 320 DpP 322 (441)
-.+
T Consensus 304 ~~~ 306 (453)
T PRK09496 304 LTN 306 (453)
T ss_pred CCC
Confidence 444
No 496
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=45.17 E-value=54 Score=26.17 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=32.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEEEcCC
Q 013515 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS 322 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il~DpP 322 (441)
+|| ++||+|.-|..++. ..+++.++..|++ +++.+.+..++.... ..+|.|+.-+|
T Consensus 4 kIL-vvCgsG~~TS~m~~------------------~ki~~~l~~~gi~-~~v~~~~~~e~~~~~---~~~D~iv~t~~ 59 (94)
T PRK10310 4 KII-VACGGAVATSTMAA------------------EEIKELCQSHNIP-VELIQCRVNEIETYM---DGVHLICTTAR 59 (94)
T ss_pred eEE-EECCCchhHHHHHH------------------HHHHHHHHHCCCe-EEEEEecHHHHhhhc---CCCCEEEECCc
Confidence 345 67888876665532 2244556666763 566666665554321 44688877666
No 497
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=45.14 E-value=1.3e+02 Score=29.06 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhcC--CcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCCCccEEE
Q 013515 241 PGWKVLDACSAPGNKTVHLAALMKG--KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAIL 318 (441)
Q Consensus 241 ~g~~VLDl~ag~G~kt~~la~~~~~--~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~fD~Il 318 (441)
.+.+||=+|+ |+.+..++..+.. ..+|+.++.+.++.+.+.+.+...+ .+.+ ..+. ... ...+|+|+
T Consensus 122 ~~k~vlVlGa--Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~-~~~~---~~~---~~~~DivI 190 (278)
T PRK00258 122 KGKRILILGA--GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAEL-DLEL---QEE---LADFDLII 190 (278)
T ss_pred CCCEEEEEcC--cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceee-cccc---hhc---cccCCEEE
Confidence 4678887776 6666666554432 2589999999988887777665332 1222 1111 111 24579998
Q ss_pred EcCCCCCCccc
Q 013515 319 LDPSCSGSGTA 329 (441)
Q Consensus 319 ~DpPCSg~G~~ 329 (441)
. |+..|+.
T Consensus 191 n---aTp~g~~ 198 (278)
T PRK00258 191 N---ATSAGMS 198 (278)
T ss_pred E---CCcCCCC
Confidence 7 6667764
No 498
>PRK07201 short chain dehydrogenase; Provisional
Probab=44.90 E-value=3.5e+02 Score=29.33 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=47.6
Q ss_pred EEEEEcCCCchHHHHHHHHhc---CCcEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----CCCCCcc
Q 013515 244 KVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-----PAYSEVR 315 (441)
Q Consensus 244 ~VLDl~ag~G~kt~~la~~~~---~~~~V~a~D~~~~rl~~l~~~~~~~g~~~v~~~~~D~~~~~~~~-----~~~~~fD 315 (441)
+|| +.-|+|..+.+++..+- ...+|++++.+... ..+.......+..+++++.+|..+..... .....+|
T Consensus 2 ~IL-VTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~D 79 (657)
T PRK07201 2 RYF-VTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDID 79 (657)
T ss_pred eEE-EeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH-HHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCCC
Confidence 455 66789999999988764 44689999986432 22222233334456889999997743110 0014679
Q ss_pred EEEEcC
Q 013515 316 AILLDP 321 (441)
Q Consensus 316 ~Il~Dp 321 (441)
.|+--+
T Consensus 80 ~Vih~A 85 (657)
T PRK07201 80 HVVHLA 85 (657)
T ss_pred EEEECc
Confidence 888644
No 499
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=44.89 E-value=1.8e+02 Score=31.29 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=77.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHh--cCCcEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCCCCCC--CCccE
Q 013515 242 GWKVLDACSAPGNKTVHLAALM--KGKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPKDPAY--SEVRA 316 (441)
Q Consensus 242 g~~VLDl~ag~G~kt~~la~~~--~~~~~V~a~D~~~~rl~~l~~~~~~~-g~~~v~~~~~D~~~~~~~~~~~--~~fD~ 316 (441)
|.+|| +..|.|+++..+...+ .+..+|+-+|.++..+-.....+... +...+.++-+|.++...-...+ -++|.
T Consensus 250 gK~vL-VTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~ 328 (588)
T COG1086 250 GKTVL-VTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI 328 (588)
T ss_pred CCEEE-EeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence 66777 6667899988876654 24579999999999999998888764 4456888999998865321111 35788
Q ss_pred EEEcCCCCCCcccccccCccCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCCCC-cEEEEEc
Q 013515 317 ILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGV-ERVVYST 381 (441)
Q Consensus 317 Il~DpPCSg~G~~~~~pd~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lL~~a~~~~~~-G~lvYsT 381 (441)
|+-=+-. .+-|=. ...-.+.+....---...+++|... +. ..+.-||
T Consensus 329 VfHAAA~------KHVPl~-----------E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iST 376 (588)
T COG1086 329 VFHAAAL------KHVPLV-----------EYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLIST 376 (588)
T ss_pred EEEhhhh------ccCcch-----------hcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEec
Confidence 8864432 111110 0112456666666667777777653 22 3454444
No 500
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=44.84 E-value=88 Score=30.04 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=48.6
Q ss_pred HHHhCCCCCCEEEEEcCCCchHHHHHHHHhcCC---cEEEEEeCCHHHHHHHHHHHHH-h-CCCcEEEEeccCCCC
Q 013515 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGK---GKIVACELNKERVRRLKDTIKL-S-GAANIEVLHGDFLNL 304 (441)
Q Consensus 234 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~---~~V~a~D~~~~rl~~l~~~~~~-~-g~~~v~~~~~D~~~~ 304 (441)
+++.....+...+|+|+|.-.||..+...+... .+-+.+|++...++.-.+.+.+ + ++ .|.-+++|....
T Consensus 71 ~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l-~v~~l~~~~~~~ 145 (321)
T COG4301 71 AEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL-EVNALCGDYELA 145 (321)
T ss_pred HHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC-eEeehhhhHHHH
Confidence 334445568899999999999999988776542 4678999999888755444443 2 22 355667776543
Done!