RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013515
(441 letters)
>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation,
ribosomal structure and biogenesis].
Length = 355
Score = 192 bits (489), Expect = 3e-57
Identities = 88/276 (31%), Positives = 136/276 (49%), Gaps = 21/276 (7%)
Query: 126 DAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAV 185
F H + L L ++ A+ P PR +RVNTLK DV+ +
Sbjct: 46 LRPAFRYSHPEWLVEKLPDALG------EDEAEAIAAALLRPPPRSLRVNTLKADVEELL 99
Query: 186 LELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWK 244
L + + +K ++ ++L + + P G +++Q +AS + A L PKPG +
Sbjct: 100 EALEEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGER 159
Query: 245 VLDACSAPGNKTVHLAALMKGKGKIV-ACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303
VLD C+APG KT HLA LM+ +G IV A +++ +R++RL++ +K G N+ V++ D
Sbjct: 160 VLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARR 219
Query: 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKK 363
L P + ILLD CSG+G D P E + +L+ QK+
Sbjct: 220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKW-------RRTP---EDIAELAKLQKE 269
Query: 364 ALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 397
L AL PG +VYSTCS+ ENE+V++ L
Sbjct: 270 ILAAALKLLKPG-GVLVYSTCSLTPEENEEVVERFL 304
>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional.
Length = 444
Score = 142 bits (361), Expect = 6e-38
Identities = 75/235 (31%), Positives = 127/235 (54%), Gaps = 17/235 (7%)
Query: 166 VPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 224
P +RVNTLK+ V+ + +L ++ + V++ L P+ L++ G ++ L +G +
Sbjct: 175 EPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEKG-NIAGTDLFKDGLIT 233
Query: 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
+Q ++S +VA AL PK G VLDAC+APG KT H+A L+K GK+VA ++++ +++ +++
Sbjct: 234 IQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE 293
Query: 285 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGH 344
K G NIE D + K + IL+D CSG G + D +
Sbjct: 294 NAKRLGLTNIETKALDARKVHEKFAEKFDK--ILVDAPCSGLGVIRRKPD-------IKY 344
Query: 345 TADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 397
++E L ++ Q + L + G +VYSTC+I + ENE+VI++ L
Sbjct: 345 NKTKEDIESLQEI---QLEILESVAQYLKKG-GILVYSTCTIEKEENEEVIEAFL 395
>gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional.
Length = 434
Score = 117 bits (295), Expect = 6e-29
Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 22/194 (11%)
Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
Q +++ +VA L P+PG +LDAC+APG KT H+A LM +G+I A + + R+++L++
Sbjct: 237 QDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN 296
Query: 286 IKLSGAANIEVLHGDFLNLDPKDPAYSEV-RAILLDPSCSGSGTAAERLD---HLLPSHA 341
+ G +I++L D NL P + ILLD CSG GT D P
Sbjct: 297 AQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTP--- 353
Query: 342 SGHTADPTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVLPI 399
E++ +L+ Q + L PG +VY+TC++H ENE I+ L
Sbjct: 354 ----------EKIQELAPLQAELLESLAPLLKPG-GTLVYATCTLHPAENEAQIEQFL-- 400
Query: 400 AMSFGFQLATPFPN 413
A ++L P
Sbjct: 401 ARHPDWKLEPPKQK 414
>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase.
[Protein synthesis, tRNA and rRNA base modification].
Length = 264
Score = 110 bits (277), Expect = 9e-28
Identities = 79/235 (33%), Positives = 109/235 (46%), Gaps = 29/235 (12%)
Query: 172 VRVNTLKMDVDSAVLELGKQFVVQKDDLVP-----DLLILPPGCDLHVHPLIVNGCVFLQ 226
+RVNTLK++V+ + L + VV + G P + G + Q
Sbjct: 1 IRVNTLKINVEDLLERLENRGVVLEPTCEEYFFEVKESPFSIGST----PEYLFGYYYPQ 56
Query: 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 286
+S + AL P+ +VLD +APG KT ++ LMK KG IVA E++K R + L I
Sbjct: 57 EASSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSRTKALISNI 116
Query: 287 KLSGAANIEVLHGDFLNLDPKDPAY-SEVRAILLDPSCSGSGTAAERLDHLLPSHASGHT 345
G N V++ D K AY + AILLD CSG G R D PS +
Sbjct: 117 NRMGVLNTIVINAD----GRKFGAYLLKFDAILLDAPCSGEGVI--RKD---PSRKRNWS 167
Query: 346 ADPTEMERLNKLSAFQKKALR---HALSFPGVERVVYSTCSIHQVENEDVIKSVL 397
E + S QK+ + AL GV +VYSTCS+ ENE+VI +L
Sbjct: 168 -----EEDIKYCSLLQKELIDAAIDALKPGGV--LVYSTCSLEVEENEEVIDYIL 215
>gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase
RsmB. This protein is also known as sun protein. The
reading frame was originally interpreted as two reading
frames, fmu and fmv. The recombinant protein from E.
coli was shown to methylate only C967 of small subunit
(16S) ribosomal RNA and to produce only m5C at that
position. The seed alignment is built from bacterial
sequences only. Eukaryotic homologs include Nop2, a
protein required for processing pre-rRNA, that is likely
also a rRNA methyltransferase, although the fine
specificity may differ. Cutoff scores are set to avoid
treating archaeal and eukaroytic homologs automatically
as functionally equivalent, although they may have very
similar roles [Protein synthesis, tRNA and rRNA base
modification].
Length = 426
Score = 111 bits (278), Expect = 9e-27
Identities = 69/258 (26%), Positives = 109/258 (42%), Gaps = 13/258 (5%)
Query: 167 PKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLHVHPLIVNGCVFL 225
P ++R+N K D + L + + DL PD + L +H P G V +
Sbjct: 163 RPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTV 222
Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
Q ++ VA LAP+ +LDAC+APG KT H+ L + ++VA ++++ R++R+ +
Sbjct: 223 QDASAQWVATWLAPQNEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYEN 281
Query: 286 IK-LSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGH 344
+K L E GD + ILLD CS +G D
Sbjct: 282 LKRLGLTIKAETKDGDGRGPSQWAEN-EQFDRILLDAPCSATGVIRRHPD-------IKW 333
Query: 345 TADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVIKSVLPIAMSFG 404
P ++ L +L + A+ L G +VY+TCS+ EN + IK+ L F
Sbjct: 334 LRKPRDIAELAELQSEILDAIWPLLKTGGT--LVYATCSVLPEENSEQIKAFLQEHPDFP 391
Query: 405 FQLATPFPNGTAEASQFL 422
F+ Q L
Sbjct: 392 FEKTGTPEQVRDGGLQIL 409
>gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family.
Length = 277
Score = 106 bits (266), Expect = 4e-26
Identities = 79/236 (33%), Positives = 109/236 (46%), Gaps = 16/236 (6%)
Query: 166 VPKPRYVRVNTLKMDVDSAVLELGKQFVVQK--DDLVPDLLILPPGCDLHVHPLIVNGCV 223
P +R N LK S + L V + L + + P NG V
Sbjct: 7 CSPPGTLRKNVLKTKRWSLLQALELAGVQLEPLGRYPHALPVGDLPYSIGSLPPFENGAV 66
Query: 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
+Q +S + A AL P+ +LD C+APG KT H+A LMK +G +VA + NK+R++R+
Sbjct: 67 TVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVY 126
Query: 284 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASG 343
I+ G NI V GD +D K E ILLD CSG+G D
Sbjct: 127 ANIQRLGVFNIIVQEGDARQIDQK-LLGGEFDRILLDAPCSGTGVIRRDPD-------IK 178
Query: 344 HTADPTEMERLNKLSAFQKKALR--HALSFPGVERVVYSTCSIHQVENEDVIKSVL 397
++ +L +L QK+ L+ L PG +VYSTCS+ ENE VIK L
Sbjct: 179 WLRREADIAQLAEL---QKELLKAAWDLVKPG-GVLVYSTCSVLPEENEAVIKYFL 230
>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional.
Length = 445
Score = 105 bits (265), Expect = 7e-25
Identities = 69/234 (29%), Positives = 105/234 (44%), Gaps = 33/234 (14%)
Query: 173 RVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLH-VHPLIVNGCVFLQGKASS 231
R+N LK + + V + +P+ + D P + G V +Q +
Sbjct: 184 RINRLKTTPEKFLAAPADASVTFEKSGLPNFFL---SKDFSLFEPFLKLGLVSVQNPTQA 240
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL--NK-ERVRRLKDTIKL 288
+ L P+PG VLD C+APG K+ +A LM+ +G+I A + K E++R +
Sbjct: 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL-- 298
Query: 289 SGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTAD- 347
G IE + GD + P++ AILLD C+G+G R A+
Sbjct: 299 -GITIIETIEGDARSFSPEEQP----DAILLDAPCTGTGVLGRR-------------AEL 340
Query: 348 --PTEMERLNKLSAFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 397
E+L +L Q + L HA S PG +VY+TCSI ENE I++ L
Sbjct: 341 RWKLTPEKLAELVGLQAELLDHAASLLKPG-GVLVYATCSIEPEENELQIEAFL 393
>gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF;
Reviewed.
Length = 470
Score = 94.2 bits (235), Expect = 8e-21
Identities = 94/289 (32%), Positives = 128/289 (44%), Gaps = 61/289 (21%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ--------------FVVQKDD 198
S++D +A Q P R +RVNTLK+ V L+L F +++DD
Sbjct: 21 SMDDFIAACQRP---LRRSIRVNTLKISVA-DFLQLMAPYGWTLTPIPWCEEGFWIERDD 76
Query: 199 LVPDLLILPPG-CDLHVHPLIVNGCVFLQGKASSM--VAAALAPKPGWK-VLDACSAPGN 254
LP G H+ +G ++Q +ASSM VAA A + VLD +APG+
Sbjct: 77 EDA----LPLGNTAEHL-----SGLFYIQ-EASSMLPVAALFADDNAPQRVLDMAAAPGS 126
Query: 255 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH------GDFLNLDPKD 308
KT +AALM +G IVA E + RV+ L I G +N+ + H G L
Sbjct: 127 KTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAAL------ 180
Query: 309 PAYSEVRAILLDPSCSGSGTAAERLDHLLPSHAS-GHTADPTEMERLNKLSAFQKKALRH 367
AILLD CSG GT R D + S + +R SAF H
Sbjct: 181 --PETFDAILLDAPCSGEGTV--RKDPDALKNWSPESNLEIAATQRELIESAF------H 230
Query: 368 ALSFPGVERVVYSTCSIHQVENEDVI---KSVLPIAMSFGFQLATPFPN 413
AL G +VYSTC++++ EN+ V K P A+ F L FP
Sbjct: 231 ALKPGGT--LVYSTCTLNREENQAVCLWLKETYPDAVEF-EPLGDLFPG 276
>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional.
Length = 431
Score = 88.4 bits (219), Expect = 5e-19
Identities = 67/242 (27%), Positives = 120/242 (49%), Gaps = 37/242 (15%)
Query: 167 PKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVP------DLLILPPGCDLHVHPLIVN 220
P P +RVN+L + + + L ++ + VP L++ G +++ +I +
Sbjct: 161 PLPTMLRVNSLAITREEVIKILAEE----GTEAVPGKHSPFSLIVRKLGVNMNDSRVIKD 216
Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
G +QG++S +V + +PG +VLD C+APG KT +A LMK +GKI+A ++++E+++
Sbjct: 217 GLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQ 276
Query: 281 RLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSH 340
++ K ++IE+ D L + IL+D C+ GTA
Sbjct: 277 LVEKHAKRLKLSSIEIKIADAERL--TEYVQDTFDRILVDAPCTSLGTARN--------- 325
Query: 341 ASGHTADPTEMERLNK-----LSAFQKKALRHA---LSFPGVERVVYSTCSIHQVENEDV 392
P + R+NK LS Q + + A L G+ ++YSTC++ + EN +V
Sbjct: 326 ------HPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGI--LLYSTCTVTKEENTEV 377
Query: 393 IK 394
+K
Sbjct: 378 VK 379
>gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional.
Length = 427
Score = 72.9 bits (180), Expect = 6e-14
Identities = 70/257 (27%), Positives = 103/257 (40%), Gaps = 75/257 (29%)
Query: 173 RVNTLKMDVDS--AVL-ELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKA 229
RVN D+ A+L E G + + PD + L +H P G V +Q A
Sbjct: 175 RVNRRHHSRDAYLALLAEAGIE--AFPHAVGPDAIRLETPVPVHQLPGFAEGWVSVQDAA 232
Query: 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK-L 288
+ + A LAP+ G +VLDAC+APG KT H+ L ++VA +++ +R+ R+++ ++ L
Sbjct: 233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQA-QVVALDIDAQRLERVRENLQRL 291
Query: 289 SGAANIEVLHGDFLNLD------PKDPAYSEVRAILLDPSCSGSGTA------------- 329
A V+ GD + P D ILLD CS +G
Sbjct: 292 GLKA--TVIVGDARDPAQWWDGQPFD-------RILLDAPCSATGVIRRHPDIKWLRRPE 342
Query: 330 ---------AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYS 380
+E LD L P G T ++Y+
Sbjct: 343 DIAALAALQSEILDALWPLLKPGGT-------------------------------LLYA 371
Query: 381 TCSIHQVENEDVIKSVL 397
TCSI ENE IK+ L
Sbjct: 372 TCSILPEENEQQIKAFL 388
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 47.8 bits (114), Expect = 4e-07
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303
+VLD G + LA+ ++ +++ + + A N+EVL GD
Sbjct: 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE 58
Query: 304 LDPKDPAYSEVRAILLDPSCSGSGTAAERL 333
L P+ I+ DP R
Sbjct: 59 LPPEADE--SFDVIISDPPLHHLVEDLARF 86
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 46.1 bits (110), Expect = 2e-06
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
PG +VLD G+ + LA L G ++ +L+ E + ++ KL+ I + GD
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPG-ARVTGVDLSPEMLELARENAKLALGPRITFVQGD 59
Query: 301 FLNLDPKDPAY 311
+ +
Sbjct: 60 APDALDLLEGF 70
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 47.6 bits (114), Expect = 4e-06
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291
+ + L KPG KVLD G+ + LA G G++V ++++ + ++ +K G
Sbjct: 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKS-VGTGEVVGLDISESMLEVAREKLKKKGV 100
Query: 292 ANIEVLHGDFLNL 304
N+E + GD NL
Sbjct: 101 QNVEFVVGDAENL 113
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 44.4 bits (106), Expect = 2e-05
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
+ A +PG VL+ G T L K ++ A E++ RL++ K + A
Sbjct: 5 IVRAANLRPGDTVLEIGPGKGALTEELLERAK---RVTAIEIDPRLAPRLRE--KFAAAD 59
Query: 293 NIEVLHGDFLNLD-PKDPAY 311
N+ V+HGD L D PK Y
Sbjct: 60 NLTVIHGDALKFDLPKLQPY 79
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 45.0 bits (107), Expect = 3e-05
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
+ + VL+ G T LA K ++VA E++ +RL++ KL+
Sbjct: 21 IVDKANLQESDTVLEIGPGKGALTTELAKRAK---QVVAIEIDPRLAKRLQE--KLALHP 75
Query: 293 NIEVLHGDFLNLD-PKD 308
N+EV+H DFL PKD
Sbjct: 76 NVEVVHQDFLKFSFPKD 92
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 42.4 bits (100), Expect = 5e-05
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGD 300
G +VLD + G + A ++V EL+ E + + L+G A + V+ GD
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGP-DARVVGVELDPEAAALARRRLALAGLAPRVRVVVGD 59
Query: 301 FLNLDPKDPAYSEVRAILLDP 321
L +L +P
Sbjct: 60 ARELLELPDG--SFDLVLGNP 78
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 42.3 bits (100), Expect = 6e-05
Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294
+ L +PG + D + G+ T+ A L+ G++ A E N E + ++ ++ G +NI
Sbjct: 13 SKLRLRPGDVLWDIGAGTGSVTIEAARLV-PNGRVYAIERNPEALDLIERNLRRFGVSNI 71
Query: 295 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSH 340
++ GD + A+ + GSG + + +
Sbjct: 72 VIVEGDAPEAPEDLL--PDPDAVFV----GGSGGLLQEILEAVERR 111
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 42.7 bits (101), Expect = 1e-04
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 229 ASSMVAAA---LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
A M A L KPG +VL+ S G T A ++ G +V+ E E V +
Sbjct: 58 APHMHAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRN 117
Query: 286 IKLSGAANIEVLHGD 300
++ G N+ V+ GD
Sbjct: 118 LEKLGLENVIVVVGD 132
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 41.3 bits (97), Expect = 2e-04
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 298
K G KVLD G T LA + ++V ++++E + + K+ K G N+E +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60
Query: 299 GDFLNLD 305
GD L
Sbjct: 61 GDIEELP 67
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 40.7 bits (96), Expect = 7e-04
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 217 LIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLA-ALMKGKGKIVACELN 275
+I + C F G + ++AA ++LD + GN + L A K KIV E+
Sbjct: 20 IIQDRCGFRYGTDAILLAAFAPVPKKGRILDLGA--GNGALGLLLAQRTEKAKIVGVEIQ 77
Query: 276 KERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSEVRAILLDP 321
+E + + L+ I+V+ D K ++ I+ +P
Sbjct: 78 EEAAEMAQRNVALNPLEERIQVIEADIKEF-LKALVFASFDLIICNP 123
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 40.5 bits (95), Expect = 8e-04
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL 297
K G K LD G+ T L+ GK+V ++N+ ++ + K G NIE L
Sbjct: 44 GVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFL 103
Query: 298 HGDFLNLDPKDPAY 311
G+ L +D ++
Sbjct: 104 QGNAEELPFEDDSF 117
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 39.9 bits (94), Expect = 8e-04
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294
+ L P+PG ++ D + G+ T+ A G+++A E ++E + ++ G N+
Sbjct: 28 SKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVDNL 86
Query: 295 EVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASG 343
EV+ GD P AI + G G E L+ G
Sbjct: 87 EVVEGDAPEALPD---LPSPDAIFI----GGGGNIEEILEAAWERLKPG 128
>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA. This
protein family was first proposed to be RNA
methyltransferases by homology to the TrmA family. The
member from E. coli has now been shown to act as the 23S
RNA methyltransferase for the conserved U1939. The gene
is now designated rumA and was previously designated
ygcA [Protein synthesis, tRNA and rRNA base
modification].
Length = 431
Score = 39.4 bits (92), Expect = 0.003
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303
V+DA G T+ LA K +V E+ E V + + +L+G AN+E L G
Sbjct: 295 LVVDAYCGVGTFTLPLA---KQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLET 351
Query: 304 LDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHL 336
+ PK P A +LLDP G AAE L +
Sbjct: 352 VLPKQPWAGQIPDVLLLDP--PRKGCAAEVLRTI 383
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 38.2 bits (90), Expect = 0.005
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-------KERVRRLKD 284
L +PG KVLD G+ + LA + G++V + + +E++R
Sbjct: 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLR---- 97
Query: 285 TIKLSGAANIEVLHGDFLNL 304
L + N+E + GD L
Sbjct: 98 --DLGLSGNVEFVQGDAEAL 115
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 36.8 bits (86), Expect = 0.011
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKL 288
S ++A K G +VL+ G + +A + G K+V ++N V K KL
Sbjct: 12 SFLLAENAVDKKGDRVLEV----GTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKL 67
Query: 289 SG--AANIEVLHGD-FLNLDPKD 308
+ +EV+ D F
Sbjct: 68 NNIRNNGVEVIRSDLFEPFRGDK 90
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 36.4 bits (85), Expect = 0.016
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
+ A PG VL+ G T L ++ A E+++ LK+ + +
Sbjct: 22 IVEAANISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKE--RFAPYD 76
Query: 293 NIEVLHGDFLNLDPKDPAYS 312
N+ V++GD L D A
Sbjct: 77 NLTVINGDALKFDFPSLAQP 96
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 36.1 bits (84), Expect = 0.021
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
G ++A PK ++L+ +A G + +A + G++ E ++ER ++
Sbjct: 47 TGALLRLLARLSGPK---RILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIAREN 103
Query: 286 IKLSGAAN-IEVLHGD 300
+ +G + IE+L G
Sbjct: 104 LAEAGVDDRIELLLGG 119
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 35.2 bits (82), Expect = 0.023
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 223 VFLQGK---ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERV 279
VF G+ S ++ + L G KVLD G LA ++ ++N +
Sbjct: 10 VFSHGRLDIGSRLLLSHLPKPLGGKVLDLGCGYGVLGAALAK-RSPDLEVTMVDINARAL 68
Query: 280 RRLKDTIKLSGAANIEVLHGD 300
+ + +G N EV D
Sbjct: 69 ESARANLAANGLENGEVFWSD 89
>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 35.4 bits (82), Expect = 0.044
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 259 LAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGD 300
+ KG+ K+ A ++N + V LK+ I+L+ +E + GD
Sbjct: 204 IPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGD 246
>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional.
Length = 209
Score = 35.1 bits (81), Expect = 0.045
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299
KPG V+D +APG + + + KG+++AC D + + ++ L G
Sbjct: 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIAC-----------DILPMDPIVGVDFLQG 98
Query: 300 DF 301
DF
Sbjct: 99 DF 100
>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein. The methionine-10 mutant
allele of N. crassa codes for a protein of unknown
function. However, homologous proteins have been found
in yeast suggesting this protein may be involved in
methionine biosynthesis, transport and/or utilisation.
Length = 199
Score = 34.6 bits (80), Expect = 0.051
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLH 298
K G V+D + G ++ +A K K ++ A ELN E V+ LK+ IKL+ I +
Sbjct: 99 KEGEVVVDMFAGIGPFSIPIAKHSKAK-RVYAVELNPEAVKYLKENIKLNKVEGVISPIL 157
Query: 299 GD 300
GD
Sbjct: 158 GD 159
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 34.5 bits (80), Expect = 0.053
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 229 ASSMVA---AALAPKPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKD 284
A MVA L KPG +VL+ + G + AA++ + G++V+ E +E + +
Sbjct: 57 APHMVARMLQLLELKPGDRVLEIGTGSG----YQAAVLARLVGRVVSIERIEELAEQARR 112
Query: 285 TIKLSGAANIEVLHGD 300
++ G N+ V HGD
Sbjct: 113 NLETLGYENVTVRHGD 128
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 34.4 bits (79), Expect = 0.077
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 232 MVAAA---LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288
MVA L KPG KVL+ + G + LA ++ G +V+ E E + + ++
Sbjct: 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK 124
Query: 289 SGAANIEVLHGD 300
G N+ V+ GD
Sbjct: 125 LGLDNVIVIVGD 136
>gnl|CDD|216840 pfam02005, TRM, N2,N2-dimethylguanosine tRNA methyltransferase.
This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA.
The TRM1 gene of Saccharomyces cerevisiae is necessary
for the N2,N2-dimethylguanosine modification of both
mitochondrial and cytoplasmic tRNAs. The enzyme is found
in both eukaryotes and archaebacteria.
Length = 375
Score = 34.7 bits (80), Expect = 0.091
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299
G VLDA SA G + + A + G ++ A +++ + V +K+ +KL+ NI V++G
Sbjct: 48 GRGIIVLDALSASGIRAIRFALEVPGVEEVFANDISPKAVELIKENVKLNEVENIVVING 107
Query: 300 D 300
D
Sbjct: 108 D 108
>gnl|CDD|235286 PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tRNA
methyltransferase; Provisional.
Length = 382
Score = 34.5 bits (80), Expect = 0.098
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 233 VAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291
V A PK P VLDA SA G + + AL G K+ ++N + V +K ++L+G
Sbjct: 48 VLRAFGPKLPRESVLDALSASGIRGIR-YALETGVEKVTLNDINPDAVELIKKNLELNGL 106
Query: 292 ANIEVLHGDF 301
N +V + D
Sbjct: 107 ENEKVFNKDA 116
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 33.6 bits (77), Expect = 0.10
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299
KPG VLD +APG + + GKG+++A +L + N++ + G
Sbjct: 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQ-----------PMKPIENVDFIRG 79
Query: 300 DF 301
DF
Sbjct: 80 DF 81
>gnl|CDD|236925 PRK11544, hycI, hydrogenase 3 maturation protease; Provisional.
Length = 156
Score = 33.4 bits (77), Expect = 0.10
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIV-ACELN 275
APK GW V+D SAP N V + L + IV A ++
Sbjct: 29 APKGGWVVIDGGSAPENDIVAIRELRPERLLIVDATDMG 67
>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure
and biogenesis].
Length = 205
Score = 33.7 bits (78), Expect = 0.10
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299
KPG V+D +APG + A + GKIVA ++ +K + L G
Sbjct: 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKP--IPGVIFLQG 92
Query: 300 DFLN 303
D +
Sbjct: 93 DITD 96
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 34.2 bits (79), Expect = 0.13
Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 38/150 (25%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
L G +VLD G + LA K K+ E++ E V ++ +G
Sbjct: 285 ALEWLELAGGERVLDLYCGVGTFGLPLA---KRVKKVHGVEISPEAVEAAQENAAANGID 341
Query: 293 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEME 352
N+E + GD P + +++DP +G AD ++
Sbjct: 342 NVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG--------------------ADREVLK 381
Query: 353 RLNKLSAFQKKALRHALSFPGVERVVYSTC 382
+L KL +R+VY +C
Sbjct: 382 QLAKL---------------KPKRIVYVSC 396
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 33.8 bits (78), Expect = 0.13
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 287
K + + A L PG +VL+A + G T +LA + +G + E+ ++ + ++ +
Sbjct: 81 KDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLS 140
Query: 288 LSGAAN-IEVLHGDFLN-LDPKDPAYSEVRAILLD 320
G + + + GD +D +D V A+ LD
Sbjct: 141 EFGLGDRVTLKLGDVREGIDEED-----VDAVFLD 170
>gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function
prediction only].
Length = 252
Score = 33.0 bits (75), Expect = 0.22
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 268 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD 305
+++A E + +R R ++ + + G N EV+ GD + D
Sbjct: 56 RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD 93
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 32.4 bits (75), Expect = 0.30
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 232 MVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS 289
+V AAL K +VLD + G + LA ++ A +++ E + +
Sbjct: 76 LVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDA-RVTAVDISPEALAVARKNAARL 134
Query: 290 GAANIEVLHGDFL 302
G N+E L D+
Sbjct: 135 GLDNVEFLQSDWF 147
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 32.3 bits (74), Expect = 0.31
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288
A ++ A L P G +VLD C+ G V AA G G + A ++++ VR + L
Sbjct: 26 ADALAAEGLGP--GRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALL 81
Query: 289 SGAANIEVLHGDFL 302
+G +++V GD+
Sbjct: 82 AG-VDVDVRRGDWA 94
>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.
Length = 202
Score = 31.7 bits (73), Expect = 0.47
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
L+ G V +A + E+++ V + I+ G N+ +L GD
Sbjct: 44 HLEIGFGKGEFLVEMAKANPDIN-FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGD 98
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 31.5 bits (72), Expect = 0.63
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 229 ASSMVA---AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
A MVA L K G KVL+ + G +A ++ GK+V E E + K T
Sbjct: 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKT 120
Query: 286 IKLSGAANIEVLHGD 300
+K G N+EV+ GD
Sbjct: 121 LKKLGYDNVEVIVGD 135
>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein.
Members of this protein family are FHA
(forkhead-associated) domain-containing proteins that
are part of type VI secretion loci in a considerable
number of bacteria, most of which are known pathogens.
Species include Pseudomonas aeruginosa PAO1, Aeromonas
hydrophila, Yersinia pestis, Burkholderia mallei, etc
[Protein fate, Protein and peptide secretion and
trafficking, Cellular processes, Pathogenesis].
Length = 396
Score = 32.0 bits (73), Expect = 0.67
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 290 GAANIEVL-HGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADP 348
G N L GD L L E+R L DP S + R D LP+ T DP
Sbjct: 79 GRGNPVRLEQGDRLRLGD-----YEIRVSLGDPLVSRQ-ASESRADTSLPTAGGPPTPDP 132
Query: 349 TEMERLNKLSAFQKKALRHA 368
+ +L+ L A ++ L A
Sbjct: 133 APLAQLDPLKALDQEPLSAA 152
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 32.1 bits (73), Expect = 0.67
Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 19/130 (14%)
Query: 82 KHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFG---QEISLVGDAEKFL-----ML 133
KH + K L+ S+L+S ++E+++ L ++ LFG ++I + D+E F+ ++
Sbjct: 351 KHYASFKFSLEMLSMLDSLLIKKEKILNNL-FNKLFGDLKEKIETLLDSEYFISKYTNII 409
Query: 134 HKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFV 193
L A+ +++ + I D ALY + + +K D + EL K+ +
Sbjct: 410 SLSEHTLKAAEDVLKENSQKIADY-ALYSN--------LEIIEIKKKYDEKINEL-KKSI 459
Query: 194 VQKDDLVPDL 203
Q L+ +
Sbjct: 460 NQLKTLISIM 469
>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 31.5 bits (72), Expect = 0.68
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 253 GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLD 305
GN T L L K K++A E++ V LK + S A +EV+ GD L +
Sbjct: 48 GNLTEKL--LQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 31.3 bits (71), Expect = 0.74
Identities = 16/75 (21%), Positives = 38/75 (50%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299
+ G LD C + ++ LA + +G ++ + ++ + + +K +G N+E++HG
Sbjct: 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHG 103
Query: 300 DFLNLDPKDPAYSEV 314
+ + L D ++ V
Sbjct: 104 NAMELPFDDNSFDYV 118
>gnl|CDD|237291 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed.
Length = 443
Score = 31.7 bits (73), Expect = 0.76
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 232 MVAAA---LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288
MVA A L P+PG +VLD GN T+ LA ++V E + V R ++ +
Sbjct: 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARR 341
Query: 289 SGAANIEVLHGDFLNLDPKDP-AYSEVRAILLDPSCSGSGTAAERLDHL 336
+G N+ H + P A +LLDP +G AAE + L
Sbjct: 342 NGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG---AAEVMQAL 387
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the immunosuppressant
FK506 in Streptomyces strain MA6548.
Length = 144
Score = 30.8 bits (70), Expect = 0.76
Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 298
V+D + G+ +++ A +G+++A E + L++ +KL+ N+ +L+
Sbjct: 2 VIDVGANIGDFSLY-FARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLN 54
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 30.9 bits (70), Expect = 0.81
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE-RVRRLKDTIKLS 289
+M+ + P+PG K+L+ + G + A ++ +GK+ E+ KE + ++ +L
Sbjct: 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG 121
Query: 290 GAANIEVLHGD 300
+EV HGD
Sbjct: 122 YWGVVEVYHGD 132
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 31.4 bits (71), Expect = 1.00
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
G +VL+ G ++ ++ KG +V+ E +++ K ++ G N+ + GD
Sbjct: 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGD 139
>gnl|CDD|217098 pfam02550, AcetylCoA_hydro, Acetyl-CoA hydrolase/transferase
N-terminal domain. This family contains several enzymes
which take part in pathways involving acetyl-CoA.
Acetyl-CoA hydrolase EC:3.1.2.1 catalyzes the formation
of acetate from acetyl-CoA, CoA transferase (CAT1)
EC:2.8.3.- produces succinyl-CoA, and acetate-CoA
transferase EC:2.8.3.8 utilises acyl-CoA and acetate to
form acetyl-CoA.
Length = 198
Score = 30.6 bits (69), Expect = 1.1
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 271 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPS--CSGSGT 328
A + K +R + + I++ G FL+ P+ A L P+ SG
Sbjct: 36 AKAIPKYLAKRKVELVNAKVKTFIDLAVGAFLSAGPEAEVTDWKDAFLYRPAPKQSGELG 95
Query: 329 AA---ERLDHLLPSHAS 342
+ L + H S
Sbjct: 96 RKAINQGLASFVDKHLS 112
>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed.
Length = 272
Score = 30.5 bits (70), Expect = 1.4
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 261 ALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD 308
L++ K+ A E++++ L +T N+ ++ GD L +D +
Sbjct: 59 PLLERAAKVTAVEIDRDLAPILAETFAED---NLTIIEGDALKVDLSE 103
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 30.3 bits (69), Expect = 1.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVA 271
LA +PG +VLD PGN LA + +G++V
Sbjct: 13 ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVG 49
>gnl|CDD|224780 COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 380
Score = 30.4 bits (69), Expect = 1.7
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
V A +VLDA SA G + + A+ G K+V +++ + V +K+ ++L+
Sbjct: 44 VLKAFGKLLPKRVLDALSATGIRGIR-YAVETGVVKVVLNDISPKAVELIKENVRLNSGE 102
Query: 293 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLD 334
+ EV++ D L + +V I +DP G+ A LD
Sbjct: 103 DAEVINKDANALLHELHRAFDV--IDIDP----FGSPAPFLD 138
>gnl|CDD|227034 COG4690, PepD, Dipeptidase [Amino acid transport and metabolism].
Length = 464
Score = 30.1 bits (68), Expect = 2.3
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 284 DTIKLSGAANIEVLHG-DFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHAS 342
I +G N V FLN D K Y+ + P + E + +L H
Sbjct: 230 SNIPDTGYNNPRVWIVQKFLNPDVKVDPYNSDLPFIQKPHRK---ISVEDVKFVLRDHYE 286
Query: 343 GHTADPTEME 352
G DP
Sbjct: 287 GTNYDPYGSH 296
>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase. In both E. coli
and Saccharomyces cerevisiae, this protein is
responsible for the dimethylation of two adjacent
adenosine residues in a conserved hairpin of 16S rRNA in
bacteria, 18S rRNA in eukaryotes. This adjacent
dimethylation is the only rRNA modification shared by
bacteria and eukaryotes. A single member of this family
is present in each of the first 20 completed microbial
genomes. This protein is essential in yeast, but not in
E. coli, where its deletion leads to resistance to the
antibiotic kasugamycin. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase [Protein synthesis, tRNA and rRNA
base modification].
Length = 253
Score = 29.9 bits (68), Expect = 2.6
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
+ A G VL+ G T L K K+ A E+++ RL+ LS
Sbjct: 21 IVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDRRLAERLRK--LLSLYE 75
Query: 293 NIEVLHGDFLNLD 305
N+E++ GD L +D
Sbjct: 76 NLEIIEGDALKVD 88
>gnl|CDD|183769 PRK12819, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 257
Score = 29.8 bits (67), Expect = 2.7
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 1 MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARRE-----AAKVLRLVLRGDAR 51
M P GA +G L +A AR + A + RLV R +
Sbjct: 135 MGENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVSAEQNDRLVQRENKS 190
>gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional.
Length = 395
Score = 29.8 bits (67), Expect = 2.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 403 FGFQLATPFPNGTAEASQFLKALSIY 428
F F LA G A+A FL AL I+
Sbjct: 311 FSFVLAAGPEKGKAKAHAFLDALEIF 336
>gnl|CDD|217132 pfam02597, ThiS, ThiS family. ThiS (thiaminS) is a 66 aa protein
involved in sulphur transfer. ThiS is coded in the
thiCEFSGH operon in E. coli. This family of proteins
have two conserved Glycines at the COOH terminus.
Thiocarboxylate is formed at the last G in the
activation process. Sulphur is transferred from ThiI to
ThiS in a reaction catalyzed by IscS. MoaD, a protein
involved sulphur transfer in molybdopterin synthesis, is
about the same length and shows limited sequence
similarity to ThiS. Both have the conserved GG at the
COOH end.
Length = 70
Score = 27.2 bits (61), Expect = 3.4
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 235 AALAPKPGWKVLDACSAPGNKTVH-LAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293
A L G ++ P TV L + + VA +N E V R + L
Sbjct: 5 AELRELAGKELEL----PEGATVAELLEALGLNPERVAVAVNGEIVPRSQADTPLKDGDE 60
Query: 294 IEVLH 298
+ ++
Sbjct: 61 VAIIP 65
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 29.0 bits (65), Expect = 4.0
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-KLSGAANIEVLHGD 300
G +LD G+ TV + L+ GK+ A + +++ + + K NI ++ G+
Sbjct: 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGE 100
Query: 301 FLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPS 339
+ + I + G G+ E+L ++ +
Sbjct: 101 APEILFT--INEKFDRIFI-----GGGS--EKLKEIISA 130
>gnl|CDD|113159 pfam04378, DUF519, Protein of unknown function (DUF519). Bacterial
family of unknown function, possibly secreted. The
structure solved for the hypothetical protein Lpl1258 is
putatively involved in the catabolism of external DNA.
Length = 245
Score = 28.5 bits (64), Expect = 6.0
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 260 AALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRA-IL 318
L++ + ++V CEL+ LK +G + V D E R +L
Sbjct: 73 RQLLRAQDRLVLCELHPSDYPLLKAE--FAGDRRVRVHQADGFAALKAFLPPKERRGLVL 130
Query: 319 LDP 321
+DP
Sbjct: 131 IDP 133
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 28.8 bits (65), Expect = 6.3
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 344 HTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY-STC 382
TA E+L K+ALR L PG+ V STC
Sbjct: 9 KTAPVELREKLAFSEEELKEALRRLLEKPGISEAVLLSTC 48
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 28.0 bits (63), Expect = 7.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN 275
L P G VLD +APG + L G GK+VA +L
Sbjct: 18 LKPGKGKTVLDLGAAPGGFSQVLLERG-GAGKVVAVDLG 55
>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase. The
sequences in this family are members of the pfam01370
superfamily of NAD-dependent epimerases and dehydratases
typically acting on nucleotide-sugar substrates. The
genes of the family modeled here are generally in the
same locus with genes involved in the biosynthesis and
elaboration of hopene, the cyclization product of the
polyisoprenoid squalene. This gene and its association
with hopene biosynthesis in Zymomonas mobilis has been
noted in the literature where the gene symbol hpnA was
assigned. Hopanoids are known to be components of the
plasma membrane and to have polar sugar head groups in
Z. mobilis and other species.
Length = 328
Score = 28.4 bits (64), Expect = 7.2
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 345 TADPTEMERLNKLSAFQKKALRHALSFPGVERVVY 379
DP EM N L A GVERVVY
Sbjct: 79 APDPEEMYAANVEGTR---NLLRAALEAGVERVVY 110
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 28.7 bits (65), Expect = 8.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 386 QVENEDVIKSVLPIAMSFGFQLATPFP 412
+ N+DVI S LP SFG + P
Sbjct: 819 NLRNDDVILSSLPFFHSFGLTVTLWLP 845
>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed.
Length = 586
Score = 28.6 bits (65), Expect = 8.8
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 290 GAANI-EVLHGDFLNLDPKDP 309
GAA+I VL FL DPK+P
Sbjct: 36 GAADIAYVLWTRFLRHDPKNP 56
>gnl|CDD|218494 pfam05201, GlutR_N, Glutamyl-tRNAGlu reductase, N-terminal domain.
Length = 150
Score = 27.1 bits (61), Expect = 10.0
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 344 HTADPTEMERLNKLSAFQKKALRHALSFPGVERVVY-STC 382
TA E+L ++AL + PGV V STC
Sbjct: 6 KTAPVEIREKLAFSDEELEEALEELKASPGVSEAVILSTC 45
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.381
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,329,828
Number of extensions: 2200230
Number of successful extensions: 2045
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2011
Number of HSP's successfully gapped: 91
Length of query: 441
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 341
Effective length of database: 6,502,202
Effective search space: 2217250882
Effective search space used: 2217250882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)