RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013515
(441 letters)
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 129 bits (324), Expect = 5e-35
Identities = 106/248 (42%), Positives = 142/248 (57%), Gaps = 27/248 (10%)
Query: 169 PRYVRVNTLKMDVDSAVLELGKQFV-------------------VQKDDLVPDLLILPPG 209
PR+VRVNTLK D V +Q D L+P+LL+ P
Sbjct: 3 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62
Query: 210 CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKI 269
DLH HPL G + LQ +AS + A L P PG V+DAC+APGNKT HLAAL+K +GKI
Sbjct: 63 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 122
Query: 270 VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTA 329
A +L+ +R+ + + +G + E+ DFL + P DP Y EV ILLDPSCSGSG
Sbjct: 123 FAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMP 182
Query: 330 AERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVEN 389
+ +L+ S RL+ L+ FQ++AL HAL+FP ++R+VYSTCS+ Q EN
Sbjct: 183 SRQLEEPGAGTPSPV--------RLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEEN 234
Query: 390 EDVIKSVL 397
EDV++ L
Sbjct: 235 EDVVRDAL 242
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 94.3 bits (233), Expect = 4e-22
Identities = 71/264 (26%), Positives = 117/264 (44%), Gaps = 15/264 (5%)
Query: 137 AIQLALAQLLVRNKVKSI-EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVV 194
++L ++L + E + + + + P PR RVNTLK+ V V L K+ F
Sbjct: 9 LLRLGYSKLFADRYFQLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQF 68
Query: 195 QKDDLVPDLLILPPG-CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPG 253
++ + L + P + G +++Q +S AL PKPG V D +APG
Sbjct: 69 KRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPG 128
Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
KT +LA LM+ G I A ++++ R+R + + G N+ + H L++ + +
Sbjct: 129 GKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEF-- 186
Query: 314 VRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPG 373
ILLD C+GSG + + +++ L + L G
Sbjct: 187 -DKILLDAPCTGSG-------TIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG 238
Query: 374 VERVVYSTCSIHQVENEDVIKSVL 397
+VYSTCS+ ENE VI+ L
Sbjct: 239 --ILVYSTCSLEPEENEFVIQWAL 260
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 90.5 bits (223), Expect = 5e-21
Identities = 54/244 (22%), Positives = 94/244 (38%), Gaps = 13/244 (5%)
Query: 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLH 213
E ++ + + P ++R+N DS + L + + PD + L +H
Sbjct: 15 EQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH 74
Query: 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 273
P +G V +Q ++ LAP+ G +LD C+APG KT H+ + + A +
Sbjct: 75 ALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVV-AVD 133
Query: 274 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERL 333
++++R+ R+ D +K G + ILLD CS +G
Sbjct: 134 IDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD--RILLDAPCSATGVIRRHP 191
Query: 334 DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQVENEDVI 393
D ++ L +L + +VY+TCS+ EN I
Sbjct: 192 DIK-------WLRRDRDIPELAQLQSEI--LDAIWPHLKTGGTLVYATCSVLPEENSLQI 242
Query: 394 KSVL 397
K+ L
Sbjct: 243 KAFL 246
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 54.8 bits (131), Expect = 6e-09
Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
++ P + +V + G K +M+ + + PG VL+A S G ++ L+
Sbjct: 60 QYMLRRPALEDYVVLMK-RGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSK 118
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAA-----------NIEVLHGDFLNLDPKDPA 310
+ +G++++ E+ K+ K K + N++ +H D +D
Sbjct: 119 AVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA-TEDIK 177
Query: 311 YSEVRAILLD 320
A+ LD
Sbjct: 178 SLTFDAVALD 187
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 52.8 bits (126), Expect = 1e-08
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 231 SMVAAALA------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
S +AA + + +VL +A G HLA ++ +G I A E + + +L +
Sbjct: 40 SKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLE 98
Query: 285 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSC 323
++ NI L D +V I D +
Sbjct: 99 LVRERN--NIIPLLFDASKPWKYSGIVEKVDLIYQDIAQ 135
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 48.6 bits (115), Expect = 3e-07
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 10/118 (8%)
Query: 231 SMVAAALA-------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
S + AA+ KPG VL A G H++ ++ +GKI E + +R L
Sbjct: 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV 115
Query: 284 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGS-GTAAERLDHLLPSH 340
+ NI + GD + +V I D + + + L
Sbjct: 116 P--IVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRG 171
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 48.1 bits (114), Expect = 6e-07
Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 5/147 (3%)
Query: 181 VDSAVLELGKQFVVQKDDLVP----DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAA 236
V + LG V++ D + ++ +I + +S +
Sbjct: 22 VKGKMHHLGISRVIEPGDELIVSGKSFIVSDFSPMYFGR-VIRRNTQIISEIDASYIIMR 80
Query: 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 296
+PG +L+ GN + ++ + GKG + E +++ +++ D +
Sbjct: 81 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVR 140
Query: 297 LHGDFLNLDPKDPAYSEVRAILLDPSC 323
+ D Y V A + DP
Sbjct: 141 TSRSDIADFISDQMYDAVIADIPDPWN 167
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 47.7 bits (113), Expect = 1e-06
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 287
K ++ + PG +VL+A + G T+ L + G++++ E + + +
Sbjct: 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 142
Query: 288 LSGAA---NIEVLHGDFLNLDPKDPAYSEVRAILLDP 321
N ++ D + + D + +L P
Sbjct: 143 GCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDMLAP 179
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 41.3 bits (96), Expect = 7e-05
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG- 290
++ P +D G T+ L ++ A + N E + + ++ G
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLE---LAGRVRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 291 AANIEVLHGDFLNLDPKDPAYSEVRAI 317
N+ ++ GD K P
Sbjct: 81 GDNVTLMEGDAPEALCKIPDIDIAVVG 107
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 41.8 bits (97), Expect = 9e-05
Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 26/155 (16%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291
+ G + LD S G +HL G ++VA + + E +RR ++ +L+G
Sbjct: 136 ENRLYMERFRGERALDVFSYAGGFALHL---ALGFREVVAVDSSAEALRRAEENARLNGL 192
Query: 292 ANIEVLHGDFLNLDPKDPAYSEV-RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE 350
N+ VL + +L + E ++LDP P+ A G
Sbjct: 193 GNVRVLEANAFDLLRRLEKEGERFDLVVLDP----------------PAFAKGKKDVERA 236
Query: 351 MERLNKLSAFQKKALRHALSFPGVERVVYSTCSIH 385
+++ K L+ G + ++CS H
Sbjct: 237 YRAYKEVNLRAIKLLK-----EG-GILATASCSHH 265
>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella
flexneri [TaxId: 623]}
Length = 250
Score = 39.2 bits (91), Expect = 6e-04
Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 17/148 (11%)
Query: 227 GKASSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
G VA A+ K V+DA + G LA++ ++ E N L D
Sbjct: 72 GGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDD 128
Query: 285 TIKLSGA---------ANIEVLHGDFLNLDPKDPAYSEVRAILLDPSCSGSGTAAERLDH 335
+ A ++++H L +V + LDP +A
Sbjct: 129 GLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV--VYLDPMFPHKQKSALVKKE 186
Query: 336 L-LPSHASGHTADPTEMERLNKLSAFQK 362
+ + G D + +L A ++
Sbjct: 187 MRVFQSLVGPDLDADGLLEPARLLATKR 214
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 37.1 bits (85), Expect = 0.002
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 9/130 (6%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
V L P+ +LD G + + G +I+ +++ E +R ++ +K
Sbjct: 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-D 72
Query: 293 NIEVLHGDFLNLD--PKDPAYSEVRAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTE 350
+ + + D K +V IL+D S +L +
Sbjct: 73 RVSLFKVSYREADFLLKTLGIEKVDGILMDLGVS-----TYQLKGENRELENLKEFLKKA 127
Query: 351 MERLNKLSAF 360
+ LN
Sbjct: 128 EDLLNPGGRI 137
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 36.0 bits (82), Expect = 0.006
Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 31/161 (19%)
Query: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI-EVLHG 299
PG +VLD + G +H A + G +++ + + + K+ KL+G + + + G
Sbjct: 145 PGDRVLDVFTYTGGFAIH--AAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG 202
Query: 300 DFLNLDPKDPAYSEV-RAILLDPSCSGSGTAAERLDHLLPSHASGHTADPTEMERLNKLS 358
K E ++LDP L
Sbjct: 203 SAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKD-----------------------LKAGL 239
Query: 359 AFQKKALRHALSF--PGVERVVYSTCSIHQVENEDVIKSVL 397
L+ G +V +CS H V+ + ++
Sbjct: 240 RAYFNVNFAGLNLVKDG-GILVTCSCSQH-VDLQMFKDMII 278
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 375
Score = 36.1 bits (83), Expect = 0.007
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291
+V L VLDA SA G + + AL ++ +++++ +K + L+
Sbjct: 36 IVVVLLNILNPKIVLDALSATGIRGIR-FALETPAEEVWLNDISEDAYELMKRNVMLNFD 94
Query: 292 ANIEVLHGD 300
+ G
Sbjct: 95 GELRESKGR 103
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 35.8 bits (82), Expect = 0.008
Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-------KERVRRLK 283
S V K G +D S GN V AAL G CE+ + LK
Sbjct: 206 SDVYQQCQLKKGDTFMDLGSGVGNCVVQ-AALECGCALSFGCEIMDDASDLTILQYEELK 264
Query: 284 DTIKLSGAANIEV---LHGDFLNLDPKDPAYSEVRAILLDPSC 323
KL G V L F++ + + IL++
Sbjct: 265 KRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL 307
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 35.1 bits (80), Expect = 0.010
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 231 SMVAAALA-------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
S +AAA+ K K+L ++ G H+A + + A E +R L
Sbjct: 57 SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKG-IVYAIEYAPRIMRELL 115
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 35.2 bits (80), Expect = 0.013
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 10/88 (11%)
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290
+ + + +D S G + +AA K E + + +
Sbjct: 141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCK-HHYGVEKADIPAKYAETMDREFR 199
Query: 291 AA---------NIEVLHGDFLNLDPKDP 309
+ GDFL+ + ++
Sbjct: 200 KWMKWYGKKHAEYTLERGDFLSEEWRER 227
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 34.2 bits (77), Expect = 0.023
Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE 277
++ + +VLD + G+ + + + + + KE
Sbjct: 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFS---PYVQECIGVDATKE 49
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 32.8 bits (73), Expect = 0.063
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
+ + G +VL+ A G + V E++ + +
Sbjct: 10 FMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD 58
>d1j33a_ c.39.1.1 (A:) Nicotinate
mononucleotide:5,6-dimethylbenzimidazole
phosphoribosyltransferase (CobT) {Thermus thermophilus
[TaxId: 274]}
Length = 333
Score = 31.8 bits (72), Expect = 0.17
Identities = 38/220 (17%), Positives = 68/220 (30%), Gaps = 46/220 (20%)
Query: 156 DLMALYQTPDVPK--PRYVRVNTLKMDVDSA--------VLELGKQFVVQKDDLVPDLLI 205
D+ + + PD P R VR T + A L G++ +
Sbjct: 98 DVGVVGELPDHPGLLKRKVRPGTANLAQGPAMTPEEAERALLAGREAARR---------A 148
Query: 206 LPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG 265
+ G L L A++ + AAL P V+ + G + +
Sbjct: 149 IAEGATL----LAAGDMGIGNTTAAAALTAALLGLPPEAVVGRGTGVGEEGL-------- 196
Query: 266 KGKIVACELNKERVRRLKDTIKL---SGAANIEVLHGDFLNLDPKDPAYSEVRAILLD-P 321
+ K A R+ +++ G + + G +L Y ++LD
Sbjct: 197 RRKRQAVARALARLHPGMGPLEVAAEVGGIELVAIAGIYLE------GYEAGLPLVLDGF 250
Query: 322 SCSGSGTAAERL-----DHLLPSHASGHTADPTEMERLNK 356
+ A ++ DHL H S ++E L
Sbjct: 251 PVTAGALLAWKMAPGLRDHLFAGHLSREPGHRHQLEALGL 290
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 31.1 bits (69), Expect = 0.22
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG 267
+ L KPG ++LD S G A G
Sbjct: 24 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITG 59
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 30.7 bits (68), Expect = 0.28
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 1/88 (1%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAAL-MKGKGKIVACELNKERVRRLKDTIKLSGA 291
+ L +VLD G ++ L + ++ K ++ + K
Sbjct: 48 LLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAF 107
Query: 292 ANIEVLHGDFLNLDPKDPAYSEVRAILL 319
+ ++L LD PA A++
Sbjct: 108 DKWVIEEANWLTLDKDVPAGDGFDAVIC 135
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 30.0 bits (66), Expect = 0.47
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE 277
+ A K +VLD + G+ A + K+VA +L ++
Sbjct: 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTED 48
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 29.3 bits (65), Expect = 0.58
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
LA +PG +DA H +++ G+++ + + E V R K
Sbjct: 10 ALDLLAVRPGGVYVDATLGGAG---HARGILERGGRVIGLDQDPEAVARAKGLHL--PGL 64
Query: 293 NIEVLHGDFLNLDPKDPAYSEVRAILLDPSCS 324
+ + L V IL D S
Sbjct: 65 TVVQGNFRHLKRHLAALGVERVDGILADLGVS 96
>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA
methyltransferase {Rhodobacter sphaeroides [TaxId:
1063]}
Length = 279
Score = 29.7 bits (65), Expect = 0.62
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-------KERVRRLKDTIKLS 289
PG VLD G+ A+ +G+ + + ++++ L+D +
Sbjct: 203 ALSHPGSTVLDFF--AGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDGLID 259
Query: 290 GAANIEV 296
A + E+
Sbjct: 260 KARSYEI 266
>d1l5oa_ c.39.1.1 (A:) Nicotinate
mononucleotide:5,6-dimethylbenzimidazole
phosphoribosyltransferase (CobT) {Salmonella typhimurium
[TaxId: 90371]}
Length = 346
Score = 29.9 bits (67), Expect = 0.64
Identities = 24/155 (15%), Positives = 41/155 (26%), Gaps = 20/155 (12%)
Query: 208 PGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG 267
G L V ++ + + G K
Sbjct: 162 RGVTL----FGVGELGMANTTPAAAMVSVFTGSDA----KEVVGIGANLPPSRIDNKVDV 213
Query: 268 KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVRAILLD-PSCSGS 326
A +N+ R D + G ++ + G L A +LLD +
Sbjct: 214 VRRAIAINQPNPRDGIDVLSKVGGFDLVGMTGVMLG------AARCGLPVLLDGFLSYSA 267
Query: 327 GTAAER-----LDHLLPSHASGHTADPTEMERLNK 356
AA + +L+PSH S + L+
Sbjct: 268 ALAACQIAPAVRPYLIPSHFSAEKGARIALAHLSM 302
>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 126
Score = 28.4 bits (63), Expect = 0.74
Identities = 13/98 (13%), Positives = 21/98 (21%), Gaps = 16/98 (16%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299
+L L L I CE+ V A + + G
Sbjct: 14 DEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTGLVT----ACDTLIEDG 69
Query: 300 DFLNLDPKDPAYSEVRAILLD----------PSCSGSG 327
+N A +E + C+
Sbjct: 70 MIIN--TNSDAVNEKIKSRISQLLDIHEFKCGPCNRRE 105
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
{Methylobacterium extorquens [TaxId: 408]}
Length = 596
Score = 29.5 bits (65), Expect = 0.98
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 216 PLIVNGCVFLQGKASSMVAAALAPKPG---WK 244
PL+V+G +++ + A PG W+
Sbjct: 58 PLVVDGKMYIHTSFPNNTFALGLDDPGTILWQ 89
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase
{Azotobacter vinelandii [TaxId: 354]}
Length = 243
Score = 29.0 bits (64), Expect = 1.0
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 22/114 (19%)
Query: 334 DHLLPSHASGHTADPTEMERLNKLSAFQKKALRHALSFPGVERVVYSTCSIHQ------- 386
D + A+ E R KL A + +S G T ++
Sbjct: 128 DQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILG 187
Query: 387 ----------VENEDVIKSVLPIAMSFGFQLATPFPNGTAEASQFLKALSIYFE 430
+ +LP+++S+ ++ NG A A++F K L
Sbjct: 188 VSKASMQPVWDGKAFQPRLMLPLSLSYDCRVI----NG-AAAARFTKRLGDLLA 236
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 29.0 bits (63), Expect = 1.1
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 311 YSEVRAILLDPSCSGSGTAAERLD----HLLPSHASGHTADPTEMERLNKLSAFQKKALR 366
+ +VR + DP ++ H +P+ + DP + RL + A A
Sbjct: 50 HDDVRLVTNDPRFGREAVMDRQVTRLAPHFIPARGAVGFLDPPDHTRLRRSVAAAFTARG 109
Query: 367 H 367
Sbjct: 110 V 110
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas
syringae [TaxId: 317]}
Length = 201
Score = 27.4 bits (59), Expect = 2.7
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294
++L PG +VL L+ +V EL++ V R G
Sbjct: 14 SSLNVVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYF---TERGEQPH 67
Query: 295 EVLHGDF 301
GDF
Sbjct: 68 ITSQGDF 74
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.8 bits (61), Expect = 3.2
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 24/107 (22%)
Query: 82 KHLSIIKQVLDSASILNSKWKRQE--ELVYI--LTYDILFGQ-EISLVGDAEKFLMLHKG 136
K L+ I+ L+ K++ +L++I L +DI FG E + + ++ K
Sbjct: 27 KELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRY--TEKQ 84
Query: 137 AIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDS 183
L ++ L+ N +L+ L N +K D+ S
Sbjct: 85 IGYLFISVLVNSN-----SELIRLI------------NNAIKNDLAS 114
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 26.8 bits (58), Expect = 3.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 314 VRAILLDPSCSGSGTAAERL 333
VRA+LL P +G GT A +L
Sbjct: 4 VRAVLLGPPGAGKGTQAPKL 23
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 26.8 bits (58), Expect = 4.5
Identities = 9/71 (12%), Positives = 18/71 (25%), Gaps = 3/71 (4%)
Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLH 298
K G VLD G + G G+ ++ + + + + +
Sbjct: 23 KRGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 80
Query: 299 GDFLNLDPKDP 309
D
Sbjct: 81 QDSYGRHMDLG 91
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 26.7 bits (58), Expect = 6.5
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 290 GAANI-EVLHGDFLNLDPKDPAYSE 313
G A+I EVL DFL +P++P++++
Sbjct: 31 GMADIAEVLWRDFLKHNPQNPSWAD 55
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
(Zea mays) [TaxId: 4577]}
Length = 338
Score = 26.7 bits (58), Expect = 6.8
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 288 LSGAANIEVLHGDFLNLDPKDP 309
+ A VL+ + + +PK+P
Sbjct: 34 MGCAPMGHVLYDEVMRYNPKNP 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.381
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,547,143
Number of extensions: 71126
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 39
Length of query: 441
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 353
Effective length of database: 1,199,356
Effective search space: 423372668
Effective search space used: 423372668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)