BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013516
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 125/396 (31%), Positives = 187/396 (47%), Gaps = 59/396 (14%)
Query: 1 MLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGS 60
+L+W +I++ A Y +AG L+ ++ +KW TDYF+K S + QVG GD
Sbjct: 71 VLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHT----SQNEFYGQVGQGDA---- 122
Query: 61 TTPNDHYCWMRPEDIDYDRPVTECSSC---SDXXXXXXXXXXXXXIVFKD-NKAYSQKLV 116
DH W RPED+ RP + + SD IVF++ + YS L+
Sbjct: 123 ----DHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLL 178
Query: 117 HGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLATTP 176
A+ LF F+ R +YS +A FY S Y DE +W AWLY AT +++YL A +
Sbjct: 179 THARQLFDFANNYRGKYSDSITDARNFYASADYRDELVWAAAWLYRATNDNTYLNTAES- 237
Query: 177 GLGKHAGVF-WGILDNSVLSWDNKXXXXXXXXXXXXXXXXPGYPYEEMLRTFHNQTSITM 235
L G+ WG L+WD+K Y++ ++++ N
Sbjct: 238 -LYDEFGLQNWG----GGLNWDSKVSGVQVLLAKLTNKQ----AYKDTVQSYVN------ 282
Query: 236 CSYLPTFTTWNRTRGGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYCGPNFF 295
YL +T GL+ ++ L++ NAAF+ L+AA+
Sbjct: 283 --YL--INNQQKTPKGLLYIDMWG--TLRHAANAAFIM------LEAAELG--------L 322
Query: 296 STDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKL 355
S + R+FA+TQIDY LG R S++ GFG++ P HHR +S P C W
Sbjct: 323 SASSYRQFAQTQIDYALGDGGR--SFVCGFGSNPPTRPHHRSSSCPPAPA--TCD--WNT 376
Query: 356 RDSSKPNPNTLVGALVAGPDKHDGFRDVRTNYNYTE 391
+S PN + L GALV GPD++D + D R++Y + E
Sbjct: 377 FNSPDPNYHVLSGALVGGPDQNDNYVDDRSDYVHNE 412
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 173/408 (42%), Gaps = 72/408 (17%)
Query: 1 MLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGS 60
ML+W IE Y +G++ ++K+ ++W DYF+K H + ++ + QVG GD
Sbjct: 72 MLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKA--HPSPNV--LYVQVGDGDA---- 123
Query: 61 TTPNDHYCWMRPEDIDYDRPVTECS-SC--SDXXXXXXXXXXXXXIVFKDNK-AYSQKLV 116
DH W E + +RP + SC SD IVF D+ AY+ LV
Sbjct: 124 ----DHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLV 179
Query: 117 HGAKTLFQFSRQQRARYSAGSAEAAKFYNS-TSYWDEFIWGGAWLYYATGNSSYLQLA-- 173
AK L+ F+ R YS A FYNS + Y DE +WG WLY ATG+ SYL A
Sbjct: 180 QHAKQLYTFADTYRGVYS-DCVPAGAFYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEY 238
Query: 174 -----TTPGLGKHAGVFWGILDNSVLSWDNKXXXXXXXXXXXXXXXXPGYPYEEMLRTFH 228
+T W I +WD+K +E + +
Sbjct: 239 EYDFLSTEQQTDLRSYRWTI------AWDDKSYGTYVLLA------------KETGKQKY 280
Query: 229 NQTSITMCSYLPTFTTWNR---TRGGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADT 285
+ Y R + GG+ L+ L+Y N AF+A +++ +D
Sbjct: 281 IDDANRWLDYWTVGVNGQRVPYSPGGMAVLDTWG--ALRYAANTAFVALVYAKVID---- 334
Query: 286 PGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKI 345
+ +FA QI+Y LG NPR SY+VGFGN+ P++ HHR A
Sbjct: 335 -------DPVRKQRYHDFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTA------- 380
Query: 346 RYNCKGGWKLRDSS-KPNPNTLVGALVAGP-DKHDGFRDVRTNYNYTE 391
G W +S N + L GALV GP +D + D R +Y E
Sbjct: 381 ----HGSWTDSIASPAENRHVLYGALVGGPGSPNDAYTDDRQDYVANE 424
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 112/405 (27%), Positives = 169/405 (41%), Gaps = 81/405 (20%)
Query: 1 MLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGS 60
+L WS+ E+ ++A G + + +K+ TDYFLK+ +S + QVG G+
Sbjct: 73 ILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKSHPNS----TTFYYQVGEGNA---- 124
Query: 61 TTPNDHYCWMRPEDIDYDRP----VTECSSCSDXXXXXXXXXXXXXIVFKD-NKAYSQKL 115
DH W PE+ RP S SD + +K+ + AY+ K
Sbjct: 125 ----DHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKC 180
Query: 116 VHGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQ---- 171
++ AK L+ + + G FY +TS+ D+ W WLY AT +S+Y+
Sbjct: 181 LNAAKELYAMGKANQ-----GVGNGQSFYQATSFGDDLAWAATWLYTATNDSTYITDAEQ 235
Query: 172 ---LATTPGLGKHAGVFWGILDNSVLSWDNKXXXXXXXXXXXXXXXXPGYPYEEMLRTFH 228
L T K + D + WD+ Y++ +
Sbjct: 236 FITLGNTMNENK-------MQDKWTMCWDDMYVPAALRLAQITGKQI----YKDAIEFNF 284
Query: 229 N--QTSITMCSYLPTFTTWNRTRGGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTP 286
N +T +T T GGL L+ N L+Y + + +
Sbjct: 285 NYWKTQVT------------TTPGGLKWLS--NWGVLRYAAAESMVMLV----------- 319
Query: 287 GWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIR 346
YC N +L + AK Q+DYILG NP MSYI+G+G+++ H HHR A+
Sbjct: 320 --YCKQN--PDQSLLDLAKKQVDYILGDNPANMSYIIGYGSNWCIHPHHRAAN------G 369
Query: 347 YNCKGGWKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTNYNYTE 391
Y G D++KP + L GALV GPD++D F D Y YTE
Sbjct: 370 YTYANG----DNAKPAKHLLTGALVGGPDQNDKFLDDANQYQYTE 410
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 162/411 (39%), Gaps = 80/411 (19%)
Query: 1 MLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGS 60
ML W+V EY ++ +G+ NH+ IKW DYF+K H + QVG G
Sbjct: 93 MLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIKC--HPEKDV--YYYQVGDGHA---- 144
Query: 61 TTPNDHYCWMRPEDIDYDRP---VTECSSCSDXXXXXXXXXXXXXIVFKD-NKAYSQKLV 116
DH W E + +RP V S S I+FK + YS++ +
Sbjct: 145 ----DHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYSKECL 200
Query: 117 HGAKTLFQFSRQQRARYSAGSAEAAKFYNSTS-YWDEFIWGGAWLYYATGNSSYLQLATT 175
AK LF+F+ ++ G A FYNS S ++DE W WLY AT +SSYL A +
Sbjct: 201 KHAKELFEFADTTKS--DDGYTAANGFYNSWSGFYDELSWAAVWLYLATNDSSYLDKAES 258
Query: 176 PGLGKHAGVFWGILDNSVL-------SWDNKXXXXXXXXXXXXXXXXPGYPYEEMLR--- 225
WG + + WD+ Y+E +
Sbjct: 259 ------YSDKWGYEPQTNIPKYKWAQCWDDVTYGTYLLLARIKNDNG---KYKEAIERHL 309
Query: 226 ----TFHNQTSITMCSYLPTFTTWNRTRGGLIQLNHGNPQPLQYVVNAAFLATLFSDYLD 281
T +N IT Y P W G L+Y AFLA ++SD+ +
Sbjct: 310 DWWTTGYNGERIT---YTPKGLAWLDQWGS-----------LRYATTTAFLACVYSDWEN 355
Query: 282 AADTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIP 341
T EFA++Q DY LG R S++VGFG + PK HHR A
Sbjct: 356 GDKE----------KAKTYLEFARSQADYALGSTGR--SFVVGFGENPPKRPHHRTA--- 400
Query: 342 KNKIRYNCKGGWKLRDSSKP-NPNTLVGALVAGPDKHDGFRDVRTNYNYTE 391
G W P + + L GALV GPD D + D +NY E
Sbjct: 401 --------HGSWADSQMEPPEHRHVLYGALVGGPDSTDNYTDDISNYTCNE 443
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 157/398 (39%), Gaps = 63/398 (15%)
Query: 1 MLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGS 60
MLSW+V EY + +G+L H+ I+W DYF+K S+ V GD S
Sbjct: 94 MLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHP------SKYVYYYQVGDGS--- 144
Query: 61 TTPNDHYCWMRPEDIDYDRP---VTECSSCSDXXXXXXXXXXXXXIVFKD-NKAYSQKLV 116
DH W E + +RP VT+ S S IV KD N + +
Sbjct: 145 ---KDHAWWGPAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAATYL 201
Query: 117 HGAKTLFQFSRQQRARYSAGSAEAAKFYNSTS-YWDEFIWGGAWLYYATGNSSYLQLATT 175
AK L++F+ ++ AG A +YNS S ++DE W WLY AT +S+YL A +
Sbjct: 202 QHAKELYEFAEVTKS--DAGYTAANGYYNSWSGFYDELSWAAVWLYLATNDSTYLTKAES 259
Query: 176 -----PGLGKHAGVFWGILDNSVLSWDNKXXXXXXXXXXXXXXXXPGYPYEEMLRTFHNQ 230
P + + + WD+ E L +
Sbjct: 260 YVQNWPKISGSNTIDY----KWAHCWDDVHNGAALLLAKITGKDIYKQIIESHLDYWTTG 315
Query: 231 TSITMCSYLPTFTTWNRTRGGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWYC 290
+ Y P W G L+Y AFLA ++SD++ T
Sbjct: 316 YNGERIKYTPKGLAWLDQWGS-----------LRYATTTAFLAFVYSDWVGCPST----- 359
Query: 291 GPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNCK 350
+ R+F ++QIDY LG R S++VGFG + PK HHR A
Sbjct: 360 -----KKEIYRKFGESQIDYALGSAGR--SFVVGFGTNPPKRPHHRTA-----------H 401
Query: 351 GGWKLRDSSKP-NPNTLVGALVAGPDKHDGFRDVRTNY 387
W S + +TL GALV GP D + D +NY
Sbjct: 402 SSWADSQSIPSYHRHTLYGALVGGPGSDDSYTDDISNY 439
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 106/409 (25%), Positives = 162/409 (39%), Gaps = 65/409 (15%)
Query: 2 LSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLK-TFNHSADSISRMVAQVGAGDTSGGS 60
+ W E+ ++ A G+ H + I+++ DYF++ TF ++ ++ QVG GD
Sbjct: 134 VGWGYYEFKDQFRATGQAVHAEVILRYFNDYFMRCTFRDASGNVVAFCHQVGDGDI---- 189
Query: 61 TTPNDHYCWMRPE-DIDYDRP--VTECSSCSDXXXXXXXXXXXXXIVFKD-NKAYSQKLV 116
DH W PE D + R +T+ +D + FKD + Y+ K +
Sbjct: 190 ----DHAFWGAPENDTMFRRGWFITKEKPGTDIISATAASLAINYMNFKDTDPQYAAKSL 245
Query: 117 HGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLA--- 173
AK LF F+ + G +Y S+ + D++ W AWLY AT N YL A
Sbjct: 246 DYAKALFDFAEKNPKGVVQGEDGPKGYYGSSKWQDDYCWAAAWLYLATQNEHYLDEAFKY 305
Query: 174 ----TTPGLGKHAGVFWGILDNSVLSWDNKXXXXXXXXXXXXXXXXPGYPYEEMLRTFHN 229
PG W N V S +E+ + N
Sbjct: 306 YDYYAPPG--------WIHCWNDVWS-----GTACILAEINDLYDKDSQNFEDRYKRASN 352
Query: 230 QTSITMCSYL-PTFTTWNRTRGGLIQLNHGNPQPL------QYVVNAAFLATLFSDYLDA 282
+ + P ++ GG I + G L +Y A +A ++ +
Sbjct: 353 KNQWEQIDFWKPIQDLLDKWSGGGITVTPGGYVFLNQWGSARYNTAAQLIALVYDKH--H 410
Query: 283 ADTPGWYCGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPK 342
DTP Y +A++Q+DY+LGKNP Y+VG+ ++ K+ HHR AS
Sbjct: 411 GDTPSKYA-----------NWARSQMDYLLGKNPLNRCYVVGYSSNSVKYPHHRAAS--- 456
Query: 343 NKIRYNCKGGWKLRDSSKPNPNTLVGALVAGPDKHDGFRDVRTNYNYTE 391
G K + S P+ L GALV GPD D D +Y Y E
Sbjct: 457 ---------GLKDANDSSPHKYVLYGALVGGPDASDQHVDRTNDYIYNE 496
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 112/399 (28%), Positives = 167/399 (41%), Gaps = 66/399 (16%)
Query: 1 MLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGS 60
ML+WS+ E Y+ +G+ ++ + IKW DYF+K + QVG G
Sbjct: 72 MLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKC----NPTPGVYYYQVGDGG----- 122
Query: 61 TTPNDHYCWMRPEDIDYDRP---VTECSSCSDXXXXXXXXXXXXXIVFKD-NKAYSQKLV 116
DH W E + +RP V S +VFK + Y++K +
Sbjct: 123 ---KDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCI 179
Query: 117 HGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLATT- 175
AK LF + +A+ AG A+ +Y+S+S++D+ W WLY AT +S+YL A +
Sbjct: 180 SHAKNLFDMA--DKAKSDAGYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESY 237
Query: 176 -PGLGKHA-----GVFWGILDNSVLSWDNKXXXXXXXXXXXXXXXXPGYPYEEMLRTFHN 229
P GK WG WD+ E L +
Sbjct: 238 VPNWGKEQQTDIIAYKWG------QCWDDVHYGAELLLAKLTNKQLYKDSIEMNLDFWTT 291
Query: 230 QTSITMCSYLPTFTTWNRTRGGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWY 289
+ T SY P W L Q L++ AFLA +++++
Sbjct: 292 GVNGTRVSYTPKGLAW------LFQWGS-----LRHATTQAFLAGVYAEWEG-------- 332
Query: 290 CGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNC 349
C P+ S ++F K+QIDY LG R S++VG+G + P+H HHR A
Sbjct: 333 CTPSKVS--VYKDFLKSQIDYALGSTGR--SFVVGYGVNPPQHPHHRTA----------- 377
Query: 350 KGGWKLRDSSKP-NPNTLVGALVAGPDKHDGFRDVRTNY 387
G W + +S + +T+ GALV GPD DG+ D NY
Sbjct: 378 HGSWTDQMTSPTYHRHTIYGALVGGPDNADGYTDEINNY 416
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 112/399 (28%), Positives = 167/399 (41%), Gaps = 66/399 (16%)
Query: 1 MLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNHSADSISRMVAQVGAGDTSGGS 60
ML+WS+ E Y+ +G+ ++ + IKW DYF+K + QVG G
Sbjct: 72 MLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKC----NPTPGVYYYQVGDGG----- 122
Query: 61 TTPNDHYCWMRPEDIDYDRP---VTECSSCSDXXXXXXXXXXXXXIVFKD-NKAYSQKLV 116
DH W E + +RP V S +VFK + Y++K +
Sbjct: 123 ---KDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCI 179
Query: 117 HGAKTLFQFSRQQRARYSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSYLQLATT- 175
AK LF + +A+ AG A+ +Y+S+S++D+ W WLY AT +S+YL A +
Sbjct: 180 SHAKNLFDMA--DKAKSDAGYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESY 237
Query: 176 -PGLGKHA-----GVFWGILDNSVLSWDNKXXXXXXXXXXXXXXXXPGYPYEEMLRTFHN 229
P GK WG WD+ E L +
Sbjct: 238 VPNWGKEQQTDIIAYKWG------QXWDDVHYGAELLLAKLTNKQLYKDSIEMNLDFWTT 291
Query: 230 QTSITMCSYLPTFTTWNRTRGGLIQLNHGNPQPLQYVVNAAFLATLFSDYLDAADTPGWY 289
+ T SY P W L Q L++ AFLA +++++
Sbjct: 292 GVNGTRVSYTPKGLAW------LFQWGS-----LRHATTQAFLAGVYAEWEG-------- 332
Query: 290 CGPNFFSTDTLREFAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNC 349
C P+ S ++F K+QIDY LG R S++VG+G + P+H HHR A
Sbjct: 333 CTPSKVS--VYKDFLKSQIDYALGSTGR--SFVVGYGVNPPQHPHHRTA----------- 377
Query: 350 KGGWKLRDSSKP-NPNTLVGALVAGPDKHDGFRDVRTNY 387
G W + +S + +T+ GALV GPD DG+ D NY
Sbjct: 378 HGSWTDQMTSPTYHRHTIYGALVGGPDNADGYTDEINNY 416
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 19/74 (25%)
Query: 304 AKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKLRDSSKPNP 363
A+ DY+ G NP Y+ GFG +H HHR + D P P
Sbjct: 431 AQRAADYLFGANPLGQCYVTGFGQRPVRHPHHRPSVA---------------DDVDHPVP 475
Query: 364 NTLVGALVAGPDKH 377
+VG GP++H
Sbjct: 476 GMVVG----GPNRH 485
>pdb|3H7L|A Chain A, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
pdb|3H7L|B Chain B, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
pdb|3H7L|C Chain C, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
Length = 586
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 280 LDAADTPGWYCGPNFFSTDTLRE---FAKTQIDYILGKNPRKMSYIVGFGNHYPKHVHHR 336
L + T + P+ S + ++ FA+ +++I+G NP M + G G + P ++
Sbjct: 447 LGSLATMAYLAQPHIASQEIQQQLSVFAQDALNWIVGLNPYDMCMLDGHGRNNPDYLPQY 506
Query: 337 GASIPKNKIRYNCKGGWKLRDSSKPNP 363
G K + GG++ + NP
Sbjct: 507 GFFNAKGGVCNGITGGFEDEEDIAFNP 533
>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
Angstroms Resolution
Length = 639
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 111 YSQKLVHGAKTLFQFSRQQRAR-YSAGSAEAAKFYNSTSYWDEFIWGGAWLYYATGNSSY 169
Y++K ++ AK ++F + A ++ S + Y + S D+ +W A ++ G+ Y
Sbjct: 310 YAEKCINAAKVSYEFLKNNPANVFANQSGFSTGEYATVSDADDRLWAAAEMWETLGDEEY 369
Query: 170 LQ 171
L+
Sbjct: 370 LR 371
>pdb|1EB6|A Chain A, Deuterolysin From Aspergillus Oryzae
Length = 177
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 15 AAGELNHVKEIIKWG-----TDYFLKTFNHSADSISRMVAQVG--AGDTSGGSTT--PND 65
AA N E + G +YF T + +++ + V AG TSGGSTT ND
Sbjct: 21 AAKLANQAAEAAESGDESKFEEYFKTTDQQTRTTVAERLRAVAKEAGSTSGGSTTYHCND 80
Query: 66 HYCWMRPEDIDYDRP 80
Y + P + Y P
Sbjct: 81 PYGYCEPNVLAYTLP 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,148,587
Number of Sequences: 62578
Number of extensions: 533593
Number of successful extensions: 1002
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 954
Number of HSP's gapped (non-prelim): 26
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)