BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013518
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|2HIG|B Chain B, Crystal Structure Of Phosphofructokinase Apoenzyme From
Trypanosoma Brucei.
pdb|3F5M|A Chain A, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|B Chain B, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|C Chain C, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
pdb|3F5M|D Chain D, Crystal Structure Of Atp-Bound Phosphofructokinase From
Trypanosoma Brucei
Length = 487
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 145/371 (39%), Positives = 214/371 (57%), Gaps = 37/371 (9%)
Query: 79 AGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS 138
A R +++F E IVTCGG+CPGLN VIR I ++Y V +++G GY G
Sbjct: 85 AAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSK 144
Query: 139 KNT---INLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKG 195
K + I L V +IH GGTILG+SRG D ++VD+++ G+N ++ +GGDGTQ+G
Sbjct: 145 KGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRG 204
Query: 196 AAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIEN 255
A VI +E ++RG+ ++V G+PKTIDND+ ++FGF TAVE+A +AI AA+ EA S
Sbjct: 205 ALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANY 264
Query: 256 GIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEESLQSMNQQ---------- 305
G+GVVKLMGR GFIA A + S + CL+PE+P E+ + S+ ++
Sbjct: 265 GVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPI---SEQEVMSLLERRFCHSRSCVI 321
Query: 306 -----------------DASGNKLLQDVGLWISHKIKDHFARLHKMAI---NLKYIDPTY 345
DASGNK L D+G+ ++ K+K F + +K +KYIDP+Y
Sbjct: 322 IVAEGFGQDWGRGSGGYDASGNKKLIDIGVILTEKVK-AFLKANKSRYPDSTVKYIDPSY 380
Query: 346 MIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVIT 405
MIRA P +A+D ++C LA AVH A+AG TG + + + +P + + +
Sbjct: 381 MIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRVLDLR 440
Query: 406 DRMWARVLSST 416
++W +V T
Sbjct: 441 GQLWRQVREIT 451
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|B Chain B, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|C Chain C, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|D Chain D, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|E Chain E, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|F Chain F, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|G Chain G, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
pdb|1MTO|H Chain H, Crystal Structure Of A Phosphofructokinase Mutant From
Bacillus Stearothermophilus Bound With
Fructose-6-Phosphate
Length = 319
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 106/202 (52%), Gaps = 17/202 (8%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V +YH GV ++ G+ GY G + N L V DI
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIYH--GV-EVYGVYHGYAGLIAGNIKKLEVGDVGDIIH 62
Query: 155 RGGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA + E
Sbjct: 63 RGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEH------G 116
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDIP D + GFDTA+ AI+ A S E V+++MGR+ G
Sbjct: 117 FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHER-TWVIEVMGRHAGD 175
Query: 270 IAMYATLGSRDVDCCLIPESPF 291
IA+Y+ L + LIPE+ +
Sbjct: 176 IALYSGLAG-GAETILIPEADY 196
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control
pdb|4PFK|A Chain A, Phosphofructokinase. Structure And Control
Length = 319
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 106/202 (52%), Gaps = 17/202 (8%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V +YH GV ++ G+ GY G + N L V DI
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIYH--GV-EVYGVYHGYAGLIAGNIKKLEVGDVGDIIH 62
Query: 155 RGGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA + E
Sbjct: 63 RGGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEH------G 116
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDIP D + GFDTA+ AI+ A S E V+++MGR+ G
Sbjct: 117 FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHAGD 175
Query: 270 IAMYATLGSRDVDCCLIPESPF 291
IA+++ L + LIPE+ +
Sbjct: 176 IALWSGLAG-GAETILIPEADY 196
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State
pdb|6PFK|B Chain B, Phosphofructokinase, Inhibited T-State
pdb|6PFK|C Chain C, Phosphofructokinase, Inhibited T-State
pdb|6PFK|D Chain D, Phosphofructokinase, Inhibited T-State
pdb|3U39|A Chain A, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|B Chain B, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|C Chain C, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
pdb|3U39|D Chain D, Crystal Stucture Of The Apo Bacillus Stearothermophilus
Phosphofructokinase
Length = 319
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 106/202 (52%), Gaps = 17/202 (8%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V +YH GV ++ G+ GY G + N L V DI
Sbjct: 6 VLTSGGDSPGMNAAIRSVVRKAIYH--GV-EVYGVYHGYAGLIAGNIKKLEVGDVGDIIH 62
Query: 155 RGGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGTIL T+R K ++ ++ GI + +IGGDG+ +GA + E
Sbjct: 63 RGGTILYTARCPEFKTEEGQKKGIEQLKKHGIEGLVVIGGDGSYQGAKKLTEH------G 116
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDIP D + GFDTA+ AI+ A S E V+++MGR+ G
Sbjct: 117 FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHAGD 175
Query: 270 IAMYATLGSRDVDCCLIPESPF 291
IA+++ L + LIPE+ +
Sbjct: 176 IALWSGLAG-GAETILIPEADY 196
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From
Lactobacillus Delbrueckii
Length = 319
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 141/306 (46%), Gaps = 36/306 (11%)
Query: 96 IVTCGGLCPGLNTVIRE-----IVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVN 150
I+T GG PG+N +R I GL ++ GI G+ G + + L + V
Sbjct: 6 ILTSGGDAPGMNAAVRAVTRVAIANGL-------EVFGIRYGFAGLVAGDIFPLESEDVA 58
Query: 151 DIHKRGGTILGTSR---GGHDTSKI--VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ 205
+ GT L ++R + ++ ++ ++ GI+ V +IGGDG+ GA ++ +
Sbjct: 59 HLINVSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGAL----QLTR 114
Query: 206 RGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGR 265
G G+P TIDNDIP D + G+DTA A AI+ A S + + +V +MGR
Sbjct: 115 HGFNSI--GLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASS-HHRVFIVNVMGR 171
Query: 266 YCGFIAMYATLGSRDVDCCLIPESPFYLEGEESLQSMNQQDASGNKLLQDVGLWISHK-- 323
CG IAM + D +IPE P+ + EE + Q SG +D GL + +
Sbjct: 172 NCGDIAMRVGVAC-GADAIVIPERPYDV--EEIANRLKQAQESG----KDHGLVVVAEGV 224
Query: 324 -IKDHF-ARLHKMA-INLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTV 380
D F A L K +++ +M R SD V + L AVH + G G V
Sbjct: 225 MTADQFMAELKKYGDFDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGKGGLAV 284
Query: 381 GPVNGR 386
G NG+
Sbjct: 285 GIENGK 290
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|1PFK|B Chain B, Crystal Structure Of The Complex Of Phosphofructokinase
From Escherichia Coli With Its Reaction Products
pdb|2PFK|A Chain A, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|B Chain B, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|C Chain C, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
pdb|2PFK|D Chain D, The Crystal Structure Of Unliganded Phosphofructokinase
From Escherichia Coli
Length = 320
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 105/204 (51%), Gaps = 15/204 (7%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
++T GG PG+N IR +V + +++GI GY G Y + L V+D+ R
Sbjct: 7 VLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 156 GGTILGTS-----RGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GGT LG++ R + + +++++ RGI+ + +IGGDG+ GA + E +
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTE------MGF 118
Query: 211 AVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFI 270
G+P TIDNDI D + GF TA+ AI+ + S I VV++MGRYCG +
Sbjct: 119 PCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLR-DTSSSHQRISVVEVMGRYCGDL 177
Query: 271 AMYATLGSRDVDCCLIPESPFYLE 294
+ A + + ++PE F E
Sbjct: 178 TLAAAIAG-GCEFVVVPEVEFSRE 200
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis
pdb|4A3S|B Chain B, Crystal Structure Of Pfk From Bacillus Subtilis
Length = 319
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 138/304 (45%), Gaps = 32/304 (10%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N +R +V +YH ++ GI GY G S L V DI
Sbjct: 6 VLTSGGDSPGMNAAVRAVVRKAIYHDV---EVYGIYNGYAGLISGKIEKLELGSVGDIIH 62
Query: 155 RGGTILGTSR-----GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGT L T+R K + +++ GI + +IGGDG+ GA + E
Sbjct: 63 RGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------G 116
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDIP D + GFDTA+ AI+ A S E V+++MGR+ G
Sbjct: 117 FPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHERTY-VIEVMGRHAGD 175
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEESLQSMNQQDASGNK-----LLQDVGLWISHKI 324
IA++A L + LIPE+ + + E + + + G K + + VG +
Sbjct: 176 IALWAGLAG-GAESILIPEADYDM--HEIIARLKRGHERGKKHSIIIVAEGVGSGVE--- 229
Query: 325 KDHFARLHKMAINLKYIDPT--YMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGP 382
F + + NL+ ++ R +A+D V + L AV + G G VG
Sbjct: 230 ---FGKRIEEETNLETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEGKGGRCVGI 286
Query: 383 VNGR 386
N +
Sbjct: 287 QNNK 290
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 8/208 (3%)
Query: 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKV 148
S ++ I+ GG PG + VI + + SK+ G GG G + I LT +
Sbjct: 70 SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESL 129
Query: 149 VNDIHKRGG-TILGTSRGGHDT----SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI 203
+N GG I+ + R +T +K + ++ +N + IIGGD + AA++ E
Sbjct: 130 INSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYF 189
Query: 204 RQRGLKVAVAGIPKTIDNDI--PVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVK 261
++ G + V G+PKTID D+ I+ SFGFD+A + I +A S + VK
Sbjct: 190 KKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVK 249
Query: 262 LMGRYCGFIAMYATLGSRDVDCCLIPES 289
LMGR +A+ L + + C++ E
Sbjct: 250 LMGRSASHVALECALKTHP-NICIVSEE 276
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 29/220 (13%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK- 154
++T GG PG+N +R +V +Y K+ I GY G + +D+
Sbjct: 186 VMTSGGDSPGMNPFVRAVVRA--GIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGW 243
Query: 155 --RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGA----------- 196
GGT +GT+R K ++ D GI+ + + GGDG+ GA
Sbjct: 244 LVEGGTNIGTARCKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLI 303
Query: 197 --AVIYEEIRQRGLK----VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEA 250
+ E+I Q+ + + G +IDND+ D + G ++++ RAI+ A
Sbjct: 304 EELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSSLDRICRAIDYIDATA 363
Query: 251 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESP 290
S +V++MGR+CG++ + A L + D LIPE P
Sbjct: 364 NSHSRAF-IVEVMGRHCGWLGLLAGLAT-SADYILIPEKP 401
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 156 GGTILGTSR---GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR----GL 208
GG+ +GT+R D I + G + + ++GG + +++ R R L
Sbjct: 635 GGSEIGTNRTLPNDADIGMIAYFFEKYGFDGLILVGG---FEAFISLHQLERARINYPSL 691
Query: 209 KVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCG 268
++ + IP TI N++P + S G DT + + A + N + VV++ G G
Sbjct: 692 RIPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNSG 751
Query: 269 FIAMYATLG 277
+IA +A L
Sbjct: 752 YIATHAQLA 760
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 114/242 (47%), Gaps = 29/242 (11%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS--KNTINLTPKVVNDIH 153
++T GG G+N +R +V ++ +++ + GY+G + T + V+ +
Sbjct: 20 VLTSGGDAQGMNAAVRAVV--RVGIFTGARVFFVHEGYQGLVDGGDHIREATWESVSMML 77
Query: 154 KRGGTILGTSRGG-----HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIR---- 204
+ GGT++G++R + ++ RGI + +IGGDG+ GA E
Sbjct: 78 QLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLS 137
Query: 205 --QRGLKVA-----------VAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAE 251
Q+ K+ + G+ +IDND D + G D+A+ ++A A+
Sbjct: 138 DLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTAQ 197
Query: 252 SIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEESL-QSMNQQDASGN 310
S + V+++MGR+CG++A+ +L S D IPE P E+ L + +++ G+
Sbjct: 198 SHQRTF-VLEVMGRHCGYLALVTSL-SCGADWVFIPECPPDDNWEDHLCRRLSETRTRGS 255
Query: 311 KL 312
+L
Sbjct: 256 RL 257
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 13/201 (6%)
Query: 75 HFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGY 133
H R P+ Y V+ ++ G G+N +R V GL +++L + G+
Sbjct: 390 HIRPPAPKSGSYTVA------VMNVGAPAAGMNAAVRSTVRIGLIQG---NRVLVVHDGF 440
Query: 134 RGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS--KIVDSIQDRGINQVYIIGGDG 191
G V +GG+ LG+ R S +I +I I + IIGG
Sbjct: 441 EGPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFE 500
Query: 192 TQKGAAVIYEEIRQ-RGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEA 250
G + E +Q L + IP T+ N++P D S G DTA+ + A
Sbjct: 501 AYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSA 560
Query: 251 ESIENGIGVVKLMGRYCGFIA 271
+ + +++ MG YCG++A
Sbjct: 561 AGTKRRVFIIETMGGYCGYLA 581
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 28/218 (12%)
Query: 95 CIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY--SKNTINLTPKVVNDI 152
++T GG PG+N +R +V H +G + + GY G K + + V
Sbjct: 9 AVMTSGGDSPGMNAAVRAVVRTGIH-FGCD-VFAVYEGYEGLLRGGKYLKKMAWEDVRGW 66
Query: 153 HKRGGTILGTSRG-----GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAV-------IY 200
GGT++GT+R + ++ +GI+ + + GGDG+ GA + +
Sbjct: 67 LSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLV 126
Query: 201 EEIRQRGL----------KVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEA 250
+E+ G +++ G+ +IDND+ D + G +A+E ++ A
Sbjct: 127 DELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDATA 186
Query: 251 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPE 288
+S VV++MGR+CG++A+ A + + D IPE
Sbjct: 187 KSHSRAF-VVEVMGRHCGWLALMAGIAT-GADYIFIPE 222
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 6/193 (3%)
Query: 88 VSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTI-NLTP 146
VSD ++ IV G P LY + K I G+ G + L+
Sbjct: 390 VSDRLNIGIVHVG--APSAALNAATRAATLYCLSHGHKPYAIMNGFSGLIQTGEVKELSW 447
Query: 147 KVVNDIHKRGGTILGTSR--GGHDTSKIVDSIQDRGINQVYIIGG-DGTQKGAAVIYEEI 203
V + H GG+ +GT+R D I Q ++ + I+GG +G + +
Sbjct: 448 IDVENWHNLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRT 507
Query: 204 RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLM 263
+ + + IP T+ N++P + S G DT + + A + + V ++
Sbjct: 508 QHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATRRRVFVCEVQ 567
Query: 264 GRYCGFIAMYATL 276
G + G+IA + L
Sbjct: 568 GGHSGYIASFTGL 580
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 39/226 (17%)
Query: 95 CIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIH- 153
++T GG PG+N+ +R IV ++ + + GY G + P+ + + H
Sbjct: 7 AVMTSGGDAPGMNSNVRAIVRSA--IFKGCRAFVVMEGYEGL-----VRGGPEYIKEFHW 59
Query: 154 -------KRGGTILGTSRGGHDTSKI-----VDSIQDRGINQVYIIGGDGTQKGAAV--- 198
GGT +GT+R + + + G++ + + GGDG+ GA +
Sbjct: 60 EDVRGWSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRS 119
Query: 199 --------------IYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 244
I E +R + + G +IDND+ D + G +A++ +AI+
Sbjct: 120 EWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAID 179
Query: 245 AAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESP 290
A S VV++MGR CG++A+ A + + D IPE P
Sbjct: 180 YVEATANSHSRAF-VVEVMGRNCGWLALLAGIAT-SADYIFIPEKP 223
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 14/208 (6%)
Query: 95 CIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTI-NLTPKVVNDIH 153
IV G G+N+ + + Y M + I G+ G ++ +L K +
Sbjct: 397 AIVNVGAPAGGINSAVYSMAT--YCMSQGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQ 454
Query: 154 KRGGTILGTSR---GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR---- 206
RGG+ +GT+R D I Q + + I+GG + +++ R R
Sbjct: 455 SRGGSEIGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGG---FEAFESLHQLERARESYP 511
Query: 207 GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRY 266
++ + IP T+ N++P + S G DTA+ + A S VV G
Sbjct: 512 AFRIPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGN 571
Query: 267 CGFIAMYATLGSRDVDCCLIPESPFYLE 294
G++A YA+L + +PE LE
Sbjct: 572 SGYLATYASL-AVGAQVSYVPEEGISLE 598
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 30/221 (13%)
Query: 95 CIVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTI--NLTPKVVND 151
I+T GG PG+N +R + G++ YG K+ GY G + L + V
Sbjct: 214 AIITSGGDAPGMNAAVRAVTRAGIF--YGC-KVYACYEGYTGLVKGGDMLKELQWQDVRG 270
Query: 152 IHKRGGTILGTSRGGHDTSK-----IVDSIQDRGINQVYIIGGDGTQKGAAV-------- 198
+ GGTI+GT+R + ++ GI+ + + GGDG+ GA +
Sbjct: 271 LLSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPEL 330
Query: 199 ---------IYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 249
I +E + + + G+ +IDND+ D + G +++E ++
Sbjct: 331 IKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERIIELVDYIDAT 390
Query: 250 AESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESP 290
A S VV++MGR+CG++ + + + + D IPE P
Sbjct: 391 AASHSRAF-VVEVMGRHCGWLGLMSGIAT-GADYIFIPERP 429
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 93/234 (39%), Gaps = 17/234 (7%)
Query: 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTI-NLTPK 147
S ++ I+ G LN R V L + ++ I G+ G + L
Sbjct: 596 SSRLNIAIIHVGAPTSALNPATR--VATLNSLAKGHRVFAIRNGFAGLIRHGAVRELNWI 653
Query: 148 VVNDIHKRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ 205
V D H GG+ +GT+R D + Q + + IIGG + +YE
Sbjct: 654 DVEDWHNTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGG---FEAFTALYELDAA 710
Query: 206 RG----LKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVK 261
R + + +P T+ N++P + S G DT + +A A + VV+
Sbjct: 711 RAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASASRRRTFVVE 770
Query: 262 LMGRYCGFIAMYATLGSRDVDCCLIPESPFYL----EGEESLQSMNQQDASGNK 311
+ G Y G++A YA L + + PE+P L E E L ++D N+
Sbjct: 771 VQGGYSGYLASYAGLITGAL-AVYTPENPINLQTVQEDIELLTRTYEEDDGKNR 823
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
Length = 420
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 25/223 (11%)
Query: 105 GLNTVIREIVCGLY-----HMYGVSKIL----GIDGGYRGFYSKNTINLTPKVVNDIHKR 155
G+ VI CG+ H + K+ GI G + ++ + IH
Sbjct: 13 GVTAVINASACGVIQTARKHPDQIGKVYAGRNGIIGALKEELIDTSLESDDAIQALIHTP 72
Query: 156 GGT-------ILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGL 208
GG + S + ++++ + I + GG +Q A + + + G
Sbjct: 73 GGAFGSCRYKLKNISENQREYERLIEVFRAHDIGYFFYNGGGDSQDTAYKVSQLADRMGY 132
Query: 209 KVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESI---ENGIGVVKLMGR 265
+ G+PKT+DND+P D GF + + + A ++ +S+ + ++++MGR
Sbjct: 133 PITCIGVPKTVDNDLPFTDCCPGFGSVAKYIATSTLEASLDIKSMCETSTKVFILEVMGR 192
Query: 266 YCGFIAMYATLGSRDV----DCCLIPESPFYLEGEESLQSMNQ 304
+ G+IA L + L PE PF E+ L+ ++Q
Sbjct: 193 HAGWIAAAGGLAGQSEGEPPHVILFPEIPF--NREKFLERVDQ 233
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 11/86 (12%)
Query: 215 IPKTIDNDIPVIDKSFGFDT-----AVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
+PKT+DND+P+ D GF + AV + + + A + A S + + V+++MGR+ G+
Sbjct: 139 VPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTK--VFVLEVMGRHAGW 196
Query: 270 IAMYATLGS---RDVDCC-LIPESPF 291
IA L S R++ L PE F
Sbjct: 197 IAAAGGLASSPEREIPVVILFPEISF 222
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 231 GFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYC-GFIAMYATLGSRDVD 282
G+ EE AIN + +S+E I K+ G G+I +Y LG +V+
Sbjct: 1 GYSDDEEEESNAINVVSEKTKSLEEKIAYYKMKGHTERGYITIYTNLGDFEVE 53
>pdb|1Z8L|A Chain A, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|B Chain B, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|C Chain C, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|D Chain D, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
Length = 695
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 277 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 332
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 333 PQSGAAVVHEIVRSFG 348
>pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P8
pdb|2XEG|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P4
pdb|2XEJ|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Arm-M4, Urea-Based Inhibitor
Length = 709
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 291 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 346
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 347 PQSGAAVVHEIVRSFG 362
>pdb|2C6C|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Gpi-18431
(S)-2-(4-Iodobenzylphosphonomethyl)- Pentanedioic Acid
pdb|2C6P|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Phosphate Anion
pdb|2JBJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With 2-Pmpa (2-Phosphonomethyl-Pentanedioic
Acid)
pdb|2JBK|A Chain A, Membrane-bound Glutamate Carboxypeptidase Ii (gcpii) In
Complex With Quisqualic Acid (quisqualate,
Alpha-amino-3,5- Dioxo-1,2,4-oxadiazolidine-2-propanoic
Acid)
pdb|2C6G|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Glutamate
pdb|2CIJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Methionine
Length = 707
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 289 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 344
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 345 PQSGAAVVHEIVRSFG 360
>pdb|3BXM|A Chain A, Structure Of An Inactive Mutant Of Human Glutamate
Carboxypeptidase Ii [gcpii(E424a)] In Complex With
N-Acetyl-Asp-Glu (Naag)
pdb|3SJE|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Aminononanoic Acid
pdb|3SJG|A Chain A, Human Glutamate Carboxypeptidase Ii (E424a Inactive Mutant
) In Complex With N-Acetyl-Aspartyl-Aminooctanoic Acid
pdb|3SJX|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Methionine
Length = 709
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 291 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 346
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 347 PQSGAAVVHEIVRSFG 362
>pdb|2OOT|A Chain A, A High Resolution Structure Of Ligand-Free Human Glutamate
Carboxypeptidase Ii
pdb|2OR4|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii In Complex With Quisqualic Acid
pdb|2PVV|A Chain A, Structure Of Human Glutamate Carboxypeptidase Ii (Gcpii)
In Complex With L-Serine-O-Sulfate
pdb|2PVW|A Chain A, A High Resolution Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In Complex With
2-(Phosphonomethyl)pentanedioic Acid (2-Pmpa)
pdb|3BHX|A Chain A, X-ray Structure Of Human Glutamate Carboxypeptidase Ii
(gcpii) In Complex With A Transition State Analog Of
Asp-glu
pdb|3BI0|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Glu-Glu
pdb|3BI1|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Methotrexate-Glu
pdb|3D7D|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (gcpii) In A Complex With Dcfbd, A
Urea-based Inhibitor
pdb|3D7F|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcit, A
Urea-Based Inhibitor
pdb|3D7G|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcmc, A
Urea-Based Inhibitor
pdb|3D7H|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcibzl, A
Urea-Based Inhibitor
pdb|3IWW|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In A Complex With Dbibzl, A Urea-Based Inhibitor
pdb|2XEI|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P2
pdb|3SJF|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii In
Complex With A Urea-Based Inhibitor (A25)
Length = 709
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 291 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 346
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 347 PQSGAAVVHEIVRSFG 362
>pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate
Carboxypeptidase Ii In Complex With 2-Pmpa
Length = 739
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDG 191
G+ G +S + + N++ R ++GT RG + + V G ++ GG
Sbjct: 321 GFTGNFSTQKVKMHIHSTNEV-TRIYNVIGTLRGAVEPDRYVIL---GGHRDSWVFGGID 376
Query: 192 TQKGAAVIYEEIRQRG 207
Q GAAV++E +R G
Sbjct: 377 PQSGAAVVHEIVRSFG 392
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,660,890
Number of Sequences: 62578
Number of extensions: 595390
Number of successful extensions: 1540
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1474
Number of HSP's gapped (non-prelim): 31
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)