Query 013518
Match_columns 441
No_of_seqs 274 out of 1549
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:40:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02564 6-phosphofructokinase 100.0 1E-110 3E-115 872.9 38.9 428 6-433 2-460 (484)
2 PRK06830 diphosphate--fructose 100.0 3E-102 6E-107 807.3 35.4 390 33-424 17-442 (443)
3 PTZ00286 6-phospho-1-fructokin 100.0 6E-102 1E-106 808.5 36.6 412 20-432 4-454 (459)
4 PLN02884 6-phosphofructokinase 100.0 2.2E-96 5E-101 758.5 34.9 348 73-422 35-411 (411)
5 PRK06555 pyrophosphate--fructo 100.0 2.5E-84 5.4E-89 664.5 32.9 322 92-420 4-400 (403)
6 cd00764 Eukaryotic_PFK Phospho 100.0 8.8E-84 1.9E-88 703.3 29.1 389 18-414 304-735 (762)
7 TIGR02478 6PF1K_euk 6-phosphof 100.0 2.8E-83 6.1E-88 701.8 26.7 389 18-414 301-735 (745)
8 PRK14071 6-phosphofructokinase 100.0 6.8E-81 1.5E-85 636.1 30.3 307 91-411 4-350 (360)
9 cd00763 Bacterial_PFK Phosphof 100.0 2.2E-80 4.7E-85 622.6 29.3 295 92-405 1-308 (317)
10 PRK14072 6-phosphofructokinase 100.0 2.8E-80 6.1E-85 641.8 29.8 305 91-404 3-364 (416)
11 cd00363 PFK Phosphofructokinas 100.0 1.2E-79 2.5E-84 623.1 31.2 309 92-412 1-336 (338)
12 TIGR02482 PFKA_ATP 6-phosphofr 100.0 8.1E-80 1.7E-84 614.3 28.5 286 93-396 1-301 (301)
13 TIGR02483 PFK_mixed phosphofru 100.0 1.1E-79 2.3E-84 619.5 29.0 289 93-396 1-324 (324)
14 PRK03202 6-phosphofructokinase 100.0 2.2E-78 4.8E-83 608.8 31.0 295 92-404 2-309 (320)
15 COG0205 PfkA 6-phosphofructoki 100.0 1.5E-76 3.2E-81 597.5 29.1 297 91-401 2-318 (347)
16 cd00764 Eukaryotic_PFK Phospho 100.0 6.5E-75 1.4E-79 633.7 30.9 326 90-429 2-374 (762)
17 TIGR02478 6PF1K_euk 6-phosphof 100.0 7E-75 1.5E-79 635.6 30.6 325 92-430 1-372 (745)
18 TIGR02477 PFKA_PPi diphosphate 100.0 8.4E-72 1.8E-76 592.0 34.1 310 89-399 65-475 (539)
19 PRK07085 diphosphate--fructose 100.0 5.3E-72 1.1E-76 594.7 31.8 362 26-399 10-484 (555)
20 cd00765 Pyrophosphate_PFK Phos 100.0 2.7E-71 5.8E-76 587.5 30.5 365 27-401 11-489 (550)
21 PF00365 PFK: Phosphofructokin 100.0 8.9E-72 1.9E-76 552.9 19.1 264 92-373 1-282 (282)
22 PLN02251 pyrophosphate-depende 100.0 4.8E-70 1E-74 579.1 30.5 362 27-399 37-502 (568)
23 PLN03028 pyrophosphate--fructo 100.0 2.2E-69 4.8E-74 577.9 32.1 326 72-398 57-483 (610)
24 PTZ00468 phosphofructokinase f 100.0 2.3E-67 5.1E-72 587.8 29.8 307 91-398 102-502 (1328)
25 PTZ00287 6-phosphofructokinase 100.0 4E-66 8.8E-71 581.3 32.0 307 90-397 176-572 (1419)
26 PTZ00287 6-phosphofructokinase 100.0 7.2E-58 1.6E-62 514.8 29.1 301 90-397 835-1271(1419)
27 PTZ00468 phosphofructokinase f 100.0 2.1E-49 4.5E-54 443.9 28.7 301 91-398 675-1134(1328)
28 KOG2440 Pyrophosphate-dependen 100.0 5.4E-45 1.2E-49 388.1 16.6 341 18-373 291-662 (666)
29 KOG2440 Pyrophosphate-dependen 100.0 2.2E-45 4.7E-50 391.2 9.2 436 3-438 24-551 (666)
30 PRK04761 ppnK inorganic polyph 93.1 0.25 5.3E-06 48.8 6.8 61 172-247 11-80 (246)
31 PRK04885 ppnK inorganic polyph 92.3 0.44 9.6E-06 47.5 7.4 57 180-249 35-93 (265)
32 PRK14077 pnk inorganic polypho 91.6 0.57 1.2E-05 47.2 7.4 55 180-249 64-120 (287)
33 PRK00561 ppnK inorganic polyph 90.9 0.36 7.7E-06 48.1 5.1 63 170-247 18-88 (259)
34 PRK03501 ppnK inorganic polyph 90.9 0.74 1.6E-05 45.9 7.3 55 180-248 39-96 (264)
35 PRK03372 ppnK inorganic polyph 90.3 0.48 1E-05 48.3 5.5 56 180-250 72-129 (306)
36 PRK01911 ppnK inorganic polyph 89.9 0.63 1.4E-05 47.0 5.9 57 180-251 64-122 (292)
37 PRK02649 ppnK inorganic polyph 89.0 0.71 1.5E-05 47.0 5.6 55 180-249 68-124 (305)
38 PRK04539 ppnK inorganic polyph 88.8 0.74 1.6E-05 46.6 5.5 55 180-249 68-124 (296)
39 PRK03378 ppnK inorganic polyph 88.8 0.95 2.1E-05 45.8 6.2 53 180-247 63-117 (292)
40 PRK14075 pnk inorganic polypho 88.7 1.3 2.9E-05 43.8 7.1 52 179-248 40-93 (256)
41 PF01513 NAD_kinase: ATP-NAD k 88.6 0.29 6.2E-06 49.0 2.4 62 172-248 68-131 (285)
42 PLN02935 Bifunctional NADH kin 87.2 1 2.2E-05 48.7 5.6 54 180-248 262-317 (508)
43 PRK01231 ppnK inorganic polyph 86.0 1.4 3E-05 44.7 5.6 55 180-249 62-118 (295)
44 PLN02929 NADH kinase 84.7 1.8 3.9E-05 44.1 5.7 64 179-248 63-136 (301)
45 PF00532 Peripla_BP_1: Peripla 84.6 15 0.00033 36.2 12.2 152 93-295 3-166 (279)
46 TIGR01917 gly_red_sel_B glycin 84.4 1.2 2.5E-05 47.3 4.2 46 168-215 324-370 (431)
47 cd06321 PBP1_ABC_sugar_binding 84.2 31 0.00066 32.8 13.8 127 93-261 1-128 (271)
48 COG3199 Predicted inorganic po 83.6 1.3 2.9E-05 45.6 4.2 50 167-222 87-136 (355)
49 TIGR01918 various_sel_PB selen 83.3 1.9 4.1E-05 45.7 5.3 47 167-215 323-370 (431)
50 PRK02645 ppnK inorganic polyph 83.0 1.6 3.5E-05 44.3 4.6 55 180-248 57-114 (305)
51 PRK13054 lipid kinase; Reviewe 82.6 7.7 0.00017 38.8 9.3 89 166-265 42-131 (300)
52 PRK03708 ppnK inorganic polyph 82.5 1.5 3.2E-05 44.0 4.1 53 179-247 56-110 (277)
53 PRK02155 ppnK NAD(+)/NADH kina 81.5 2.7 6E-05 42.4 5.6 53 180-247 63-117 (291)
54 PRK11914 diacylglycerol kinase 81.0 2.7 5.8E-05 42.2 5.3 85 167-265 51-136 (306)
55 PRK02231 ppnK inorganic polyph 80.7 1.6 3.4E-05 43.8 3.5 52 180-246 42-95 (272)
56 PRK13337 putative lipid kinase 80.5 5.8 0.00013 39.8 7.5 88 167-266 44-131 (304)
57 PRK14076 pnk inorganic polypho 79.7 3.2 6.9E-05 45.8 5.8 54 180-248 348-403 (569)
58 PRK01185 ppnK inorganic polyph 77.6 3.5 7.6E-05 41.3 4.8 53 180-250 52-106 (271)
59 PRK13055 putative lipid kinase 75.4 5.8 0.00013 40.5 5.9 62 167-234 46-107 (334)
60 cd01537 PBP1_Repressors_Sugar_ 72.3 81 0.0017 29.0 14.8 127 93-263 1-127 (264)
61 PLN02727 NAD kinase 72.1 3.4 7.4E-05 47.8 3.5 55 180-249 743-799 (986)
62 PLN02958 diacylglycerol kinase 71.9 17 0.00037 39.3 8.7 99 124-225 112-215 (481)
63 TIGR00147 lipid kinase, YegS/R 71.4 8.9 0.00019 38.0 6.0 50 171-224 48-98 (293)
64 TIGR03702 lip_kinase_YegS lipi 71.2 12 0.00025 37.5 6.7 91 164-264 36-126 (293)
65 PF02844 GARS_N: Phosphoribosy 71.0 8.5 0.00018 33.0 4.9 89 92-214 1-91 (100)
66 PRK00861 putative lipid kinase 70.5 8.6 0.00019 38.4 5.7 86 166-265 43-128 (300)
67 COG1570 XseA Exonuclease VII, 69.0 24 0.00051 37.9 8.7 93 90-214 134-230 (440)
68 PRK12361 hypothetical protein; 68.9 14 0.00031 40.3 7.4 88 167-265 284-372 (547)
69 cd08180 PDD 1,3-propanediol de 68.3 9.6 0.00021 38.8 5.6 52 168-219 66-119 (332)
70 PRK13057 putative lipid kinase 67.3 12 0.00026 37.1 6.0 83 168-265 39-121 (287)
71 COG0061 nadF NAD kinase [Coenz 67.3 12 0.00025 37.6 5.8 54 179-247 54-109 (281)
72 cd08173 Gro1PDH Sn-glycerol-1- 67.2 12 0.00025 38.3 5.9 54 167-225 65-118 (339)
73 PRK13059 putative lipid kinase 67.0 16 0.00035 36.5 6.8 79 175-265 51-129 (295)
74 PF00465 Fe-ADH: Iron-containi 66.4 9.5 0.00021 39.3 5.2 56 167-222 65-134 (366)
75 COG4981 Enoyl reductase domain 65.8 59 0.0013 36.0 10.8 97 170-289 111-220 (717)
76 cd08170 GlyDH Glycerol dehydro 65.6 12 0.00027 38.3 5.8 49 168-221 65-113 (351)
77 cd08172 GlyDH-like1 Glycerol d 65.3 11 0.00024 38.6 5.3 51 167-222 63-113 (347)
78 PRK06186 hypothetical protein; 65.2 13 0.00028 36.5 5.5 58 180-253 53-112 (229)
79 cd08551 Fe-ADH iron-containing 64.1 15 0.00033 37.9 6.1 56 167-222 67-135 (370)
80 COG2910 Putative NADH-flavin r 63.9 17 0.00038 34.8 5.8 93 92-194 1-110 (211)
81 PF02601 Exonuc_VII_L: Exonucl 63.0 65 0.0014 32.5 10.4 101 89-221 12-120 (319)
82 cd08177 MAR Maleylacetate redu 60.5 17 0.00038 37.1 5.8 49 168-221 65-113 (337)
83 cd06281 PBP1_LacI_like_5 Ligan 60.4 1E+02 0.0022 29.2 10.8 90 93-220 1-90 (269)
84 cd08195 DHQS Dehydroquinate sy 60.4 9.8 0.00021 39.0 3.9 50 167-219 69-121 (345)
85 cd08189 Fe-ADH5 Iron-containin 60.3 21 0.00047 36.9 6.5 55 168-222 71-139 (374)
86 PRK00002 aroB 3-dehydroquinate 60.2 14 0.0003 38.2 5.0 62 168-235 77-141 (358)
87 PRK00843 egsA NAD(P)-dependent 60.2 17 0.00037 37.4 5.7 51 167-222 74-124 (350)
88 cd07766 DHQ_Fe-ADH Dehydroquin 58.9 17 0.00038 36.7 5.4 51 168-221 66-116 (332)
89 cd08186 Fe-ADH8 Iron-containin 58.3 23 0.00049 36.9 6.3 51 168-218 72-136 (383)
90 COG1597 LCB5 Sphingosine kinas 58.3 21 0.00045 36.2 5.8 68 168-243 46-115 (301)
91 cd06533 Glyco_transf_WecG_TagA 58.2 35 0.00076 31.5 6.9 87 91-189 46-133 (171)
92 PRK10355 xylF D-xylose transpo 56.8 1.3E+02 0.0028 30.3 11.3 93 90-220 24-117 (330)
93 TIGR01357 aroB 3-dehydroquinat 56.7 22 0.00047 36.4 5.7 49 168-219 66-117 (344)
94 PRK10014 DNA-binding transcrip 56.5 1.2E+02 0.0026 29.9 11.0 87 91-215 64-150 (342)
95 cd08199 EEVS 2-epi-5-epi-valio 56.3 16 0.00035 37.9 4.7 64 167-236 71-138 (354)
96 cd08194 Fe-ADH6 Iron-containin 56.1 24 0.00052 36.6 6.0 52 167-218 67-131 (375)
97 cd08179 NADPH_BDH NADPH-depend 55.6 26 0.00057 36.3 6.2 33 168-200 69-101 (375)
98 cd08550 GlyDH-like Glycerol_de 55.1 18 0.00039 37.1 4.8 52 168-224 65-116 (349)
99 PRK15454 ethanol dehydrogenase 54.4 26 0.00056 36.9 5.9 52 168-219 94-158 (395)
100 cd08178 AAD_C C-terminal alcoh 54.2 31 0.00067 36.2 6.4 33 168-200 66-98 (398)
101 PRK09423 gldA glycerol dehydro 54.1 24 0.00052 36.5 5.6 47 168-219 72-118 (366)
102 TIGR02638 lactal_redase lactal 54.1 27 0.00058 36.3 5.9 51 168-218 74-139 (379)
103 cd08182 HEPD Hydroxyethylphosp 53.2 26 0.00056 36.2 5.6 52 168-219 65-133 (367)
104 cd08181 PPD-like 1,3-propanedi 53.1 31 0.00067 35.6 6.2 53 167-219 70-134 (357)
105 cd08196 DHQS-like1 Dehydroquin 53.0 18 0.00039 37.5 4.4 65 168-238 61-128 (346)
106 PRK10586 putative oxidoreducta 51.7 22 0.00048 36.9 4.9 59 169-233 76-134 (362)
107 cd08193 HVD 5-hydroxyvalerate 51.1 33 0.00071 35.6 6.0 53 167-219 70-135 (376)
108 cd08197 DOIS 2-deoxy-scyllo-in 51.0 26 0.00057 36.3 5.2 59 168-232 69-130 (355)
109 COG0041 PurE Phosphoribosylcar 50.9 35 0.00075 31.6 5.3 9 209-217 80-88 (162)
110 PRK15138 aldehyde reductase; P 50.7 32 0.0007 36.0 5.9 35 167-201 72-106 (387)
111 COG0206 FtsZ Cell division GTP 50.5 48 0.001 34.4 7.0 122 89-218 9-137 (338)
112 cd03822 GT1_ecORF704_like This 49.8 1.7E+02 0.0037 28.3 10.6 83 93-190 1-86 (366)
113 PLN02834 3-dehydroquinate synt 49.6 18 0.0004 38.6 3.9 49 168-219 148-199 (433)
114 PRK09860 putative alcohol dehy 49.4 40 0.00087 35.2 6.4 54 168-221 76-142 (383)
115 cd08176 LPO Lactadehyde:propan 49.2 38 0.00082 35.2 6.1 52 168-219 73-137 (377)
116 cd08171 GlyDH-like2 Glycerol d 49.0 30 0.00064 35.5 5.3 49 168-221 66-114 (345)
117 PRK15395 methyl-galactoside AB 48.6 2.9E+02 0.0063 27.6 14.2 92 89-217 22-114 (330)
118 cd08185 Fe-ADH1 Iron-containin 48.4 33 0.00072 35.6 5.6 53 168-220 71-141 (380)
119 PF00781 DAGK_cat: Diacylglyce 48.2 11 0.00024 32.7 1.7 63 170-238 43-108 (130)
120 PF07905 PucR: Purine cataboli 47.8 61 0.0013 28.1 6.4 71 144-217 31-107 (123)
121 smart00046 DAGKc Diacylglycero 47.8 18 0.00039 31.4 3.0 42 180-224 49-93 (124)
122 cd01542 PBP1_TreR_like Ligand- 47.3 2E+02 0.0044 26.8 10.4 83 94-215 2-84 (259)
123 PRK10624 L-1,2-propanediol oxi 46.6 42 0.00091 34.9 6.0 52 168-219 75-141 (382)
124 TIGR00237 xseA exodeoxyribonuc 45.4 1.2E+02 0.0025 32.5 9.2 58 181-238 188-251 (432)
125 PRK00286 xseA exodeoxyribonucl 45.3 1.6E+02 0.0036 31.1 10.3 68 171-238 180-256 (438)
126 cd08192 Fe-ADH7 Iron-containin 45.3 47 0.001 34.3 6.1 55 168-222 69-140 (370)
127 PRK05670 anthranilate synthase 45.3 38 0.00083 31.4 5.0 48 176-236 39-86 (189)
128 cd06292 PBP1_LacI_like_10 Liga 45.2 2.7E+02 0.0058 26.2 13.9 88 94-216 2-90 (273)
129 cd08184 Fe-ADH3 Iron-containin 45.0 56 0.0012 33.8 6.6 54 168-221 66-135 (347)
130 TIGR00215 lpxB lipid-A-disacch 44.4 53 0.0012 34.1 6.4 101 98-209 11-115 (385)
131 PRK15458 tagatose 6-phosphate 44.3 3.5E+02 0.0076 29.1 12.2 140 92-260 15-172 (426)
132 PRK13951 bifunctional shikimat 44.2 22 0.00048 38.6 3.6 65 168-238 222-289 (488)
133 cd08183 Fe-ADH2 Iron-containin 44.0 45 0.00097 34.6 5.7 51 168-218 63-130 (374)
134 cd08187 BDH Butanol dehydrogen 43.2 51 0.0011 34.3 6.0 56 167-222 73-141 (382)
135 cd01391 Periplasmic_Binding_Pr 42.8 2.5E+02 0.0055 25.2 11.7 83 168-261 46-131 (269)
136 TIGR03822 AblA_like_2 lysine-2 42.8 3.8E+02 0.0082 27.3 13.9 160 96-266 140-310 (321)
137 cd08198 DHQS-like2 Dehydroquin 42.3 42 0.00091 35.2 5.2 64 169-238 85-151 (369)
138 COG1454 EutG Alcohol dehydroge 42.1 54 0.0012 34.6 5.9 51 168-218 74-137 (377)
139 COG0371 GldA Glycerol dehydrog 41.7 34 0.00074 35.8 4.3 55 167-226 71-125 (360)
140 cd08174 G1PDH-like Glycerol-1- 41.5 58 0.0013 33.1 6.0 55 167-226 61-116 (331)
141 cd06301 PBP1_rhizopine_binding 41.5 2.6E+02 0.0056 26.3 10.2 44 169-216 45-88 (272)
142 PRK05637 anthranilate synthase 40.6 64 0.0014 30.9 5.8 52 174-238 38-89 (208)
143 PRK10703 DNA-binding transcrip 40.1 3.8E+02 0.0082 26.4 13.0 69 92-193 60-128 (341)
144 TIGR00288 conserved hypothetic 40.0 47 0.001 30.8 4.6 50 166-218 88-140 (160)
145 cd08188 Fe-ADH4 Iron-containin 39.9 72 0.0016 33.1 6.5 53 168-220 73-138 (377)
146 PF04405 ScdA_N: Domain of Unk 39.7 31 0.00066 26.4 2.7 27 169-197 12-38 (56)
147 cd06298 PBP1_CcpA_like Ligand- 39.5 1.7E+02 0.0037 27.4 8.6 77 169-261 44-123 (268)
148 TIGR03405 Phn_Fe-ADH phosphona 39.1 69 0.0015 33.0 6.2 52 168-219 66-136 (355)
149 cd06167 LabA_like LabA_like pr 38.8 62 0.0013 28.4 5.0 43 171-216 90-132 (149)
150 PRK13111 trpA tryptophan synth 38.8 1.8E+02 0.004 28.8 8.9 49 168-218 105-153 (258)
151 TIGR00566 trpG_papA glutamine 38.7 52 0.0011 30.7 4.8 49 174-238 37-88 (188)
152 cd08191 HHD 6-hydroxyhexanoate 38.6 65 0.0014 33.6 5.9 51 169-219 68-131 (386)
153 cd06299 PBP1_LacI_like_13 Liga 37.9 3E+02 0.0066 25.6 10.0 121 93-260 1-122 (265)
154 cd06349 PBP1_ABC_ligand_bindin 37.7 1.1E+02 0.0025 30.2 7.4 104 103-214 115-221 (340)
155 cd08549 G1PDH_related Glycerol 37.6 59 0.0013 33.2 5.4 49 168-222 69-117 (332)
156 PF03808 Glyco_tran_WecB: Glyc 37.5 3E+02 0.0065 25.2 9.6 38 91-134 48-85 (172)
157 PRK10423 transcriptional repre 36.8 4.1E+02 0.0088 25.9 11.1 70 91-193 56-125 (327)
158 cd07995 TPK Thiamine pyrophosp 36.8 1E+02 0.0022 29.2 6.5 90 96-192 2-102 (208)
159 TIGR02810 agaZ_gatZ D-tagatose 36.7 5.7E+02 0.012 27.5 13.2 140 92-260 11-168 (420)
160 cd08190 HOT Hydroxyacid-oxoaci 36.7 71 0.0015 33.7 5.9 33 168-200 68-100 (414)
161 cd06305 PBP1_methylthioribose_ 36.6 3.6E+02 0.0079 25.2 14.0 126 93-261 1-127 (273)
162 CHL00101 trpG anthranilate syn 36.5 53 0.0011 30.7 4.4 21 175-195 38-58 (190)
163 cd06315 PBP1_ABC_sugar_binding 36.1 2.5E+02 0.0055 26.9 9.4 66 93-191 2-67 (280)
164 PF05036 SPOR: Sporulation rel 36.1 41 0.0009 25.6 3.1 50 160-209 9-71 (76)
165 cd08175 G1PDH Glycerol-1-phosp 35.8 57 0.0012 33.4 4.9 45 168-218 69-113 (348)
166 cd00316 Oxidoreductase_nitroge 35.7 3.8E+02 0.0082 27.5 11.0 151 169-329 69-224 (399)
167 PRK15408 autoinducer 2-binding 35.6 4.9E+02 0.011 26.4 14.6 95 90-225 22-117 (336)
168 cd04234 AAK_AK AAK_AK: Amino A 35.3 3.2E+02 0.0069 26.2 9.7 38 153-193 4-43 (227)
169 cd08169 DHQ-like Dehydroquinat 35.0 58 0.0013 33.5 4.9 64 168-237 68-134 (344)
170 PF04263 TPK_catalytic: Thiami 34.6 1.2E+02 0.0026 26.7 6.0 54 139-192 42-96 (123)
171 TIGR00732 dprA DNA protecting 34.5 3.7E+02 0.0081 25.9 10.1 106 96-221 76-193 (220)
172 PRK06203 aroB 3-dehydroquinate 34.3 70 0.0015 33.7 5.4 63 169-237 97-162 (389)
173 COG0504 PyrG CTP synthase (UTP 34.3 81 0.0017 34.5 5.8 51 181-246 344-396 (533)
174 TIGR01162 purE phosphoribosyla 34.3 61 0.0013 30.0 4.3 54 160-219 33-86 (156)
175 PF10126 Nit_Regul_Hom: Unchar 33.9 1.4E+02 0.0031 26.0 6.2 74 132-217 27-102 (110)
176 PF02645 DegV: Uncharacterised 33.4 98 0.0021 30.7 6.0 70 142-213 40-114 (280)
177 cd01967 Nitrogenase_MoFe_alpha 33.0 4.8E+02 0.01 27.0 11.4 150 170-329 77-231 (406)
178 PF01936 NYN: NYN domain; Int 33.0 38 0.00083 29.2 2.7 44 172-218 87-130 (146)
179 PF00710 Asparaginase: Asparag 33.0 2.7E+02 0.0058 28.3 9.2 60 167-227 57-118 (313)
180 PRK03692 putative UDP-N-acetyl 32.3 1.1E+02 0.0024 30.2 6.1 86 91-189 105-191 (243)
181 TIGR00640 acid_CoA_mut_C methy 32.2 2.7E+02 0.0058 24.7 8.0 119 91-245 2-125 (132)
182 PRK15052 D-tagatose-1,6-bispho 32.0 4.2E+02 0.0091 28.5 10.5 139 93-260 13-168 (421)
183 PRK06774 para-aminobenzoate sy 32.0 56 0.0012 30.4 3.8 42 174-215 37-78 (191)
184 cd03409 Chelatase_Class_II Cla 31.6 2.8E+02 0.006 22.4 8.6 61 95-187 3-65 (101)
185 PRK02261 methylaspartate mutas 31.5 1.9E+02 0.0042 25.7 7.0 123 91-246 3-133 (137)
186 PLN02335 anthranilate synthase 30.2 80 0.0017 30.4 4.6 45 176-233 58-102 (222)
187 COG1609 PurR Transcriptional r 30.0 78 0.0017 32.2 4.8 153 92-295 59-222 (333)
188 cd06302 PBP1_LsrB_Quorum_Sensi 30.0 4.5E+02 0.0099 25.5 10.1 86 93-215 1-87 (298)
189 cd06312 PBP1_ABC_sugar_binding 29.2 4.9E+02 0.011 24.5 10.2 86 93-215 1-88 (271)
190 cd06304 PBP1_BmpA_like Peripla 29.2 4.9E+02 0.011 24.5 14.7 64 93-190 1-66 (260)
191 KOG1116 Sphingosine kinase, in 29.2 27 0.00058 38.6 1.3 104 169-277 225-333 (579)
192 PF00289 CPSase_L_chain: Carba 29.1 59 0.0013 28.0 3.1 103 92-215 3-105 (110)
193 PRK14987 gluconate operon tran 29.0 4.9E+02 0.011 25.6 10.2 85 92-215 64-148 (331)
194 PF09651 Cas_APE2256: CRISPR-a 29.0 1.6E+02 0.0034 26.3 6.0 98 183-289 24-126 (136)
195 cd01538 PBP1_ABC_xylose_bindin 29.0 5.3E+02 0.011 24.8 13.7 86 93-215 1-86 (288)
196 cd02072 Glm_B12_BD B12 binding 28.4 97 0.0021 27.7 4.5 25 167-191 65-90 (128)
197 PRK05096 guanosine 5'-monophos 28.3 3.2E+02 0.0069 28.6 8.7 104 169-288 138-243 (346)
198 cd02071 MM_CoA_mut_B12_BD meth 28.2 2.4E+02 0.0052 24.2 6.9 45 149-193 43-92 (122)
199 PLN02821 1-hydroxy-2-methyl-2- 28.2 1.2E+02 0.0026 32.9 5.8 51 169-220 351-401 (460)
200 PF02401 LYTB: LytB protein; 28.1 1.4E+02 0.0031 30.1 6.2 47 169-217 199-245 (281)
201 cd01744 GATase1_CPSase Small c 28.0 1.2E+02 0.0026 27.9 5.2 49 176-239 35-86 (178)
202 cd06273 PBP1_GntR_like_1 This 28.0 4E+02 0.0086 24.9 9.0 41 169-215 44-84 (268)
203 PRK05261 putative phosphoketol 27.6 5.6E+02 0.012 29.8 11.3 178 76-262 28-282 (785)
204 cd00537 MTHFR Methylenetetrahy 27.2 72 0.0016 31.5 3.8 50 167-216 73-137 (274)
205 smart00481 POLIIIAc DNA polyme 27.2 2.6E+02 0.0055 21.1 6.2 51 167-219 15-65 (67)
206 PF13685 Fe-ADH_2: Iron-contai 26.9 53 0.0011 32.6 2.8 49 169-222 64-112 (250)
207 PRK01045 ispH 4-hydroxy-3-meth 26.8 1.5E+02 0.0033 30.2 6.1 78 168-247 199-280 (298)
208 cd01539 PBP1_GGBP Periplasmic 26.6 5.5E+02 0.012 25.0 10.1 43 169-215 46-88 (303)
209 cd06317 PBP1_ABC_sugar_binding 26.6 3.5E+02 0.0075 25.4 8.4 42 170-215 46-87 (275)
210 PF13727 CoA_binding_3: CoA-bi 26.4 1.1E+02 0.0024 26.9 4.6 47 168-216 129-175 (175)
211 COG0763 LpxB Lipid A disacchar 26.3 1.9E+02 0.0042 30.5 6.9 109 92-215 2-117 (381)
212 PRK14021 bifunctional shikimat 26.2 67 0.0014 35.3 3.7 63 169-237 255-320 (542)
213 PRK11303 DNA-binding transcrip 25.8 6.3E+02 0.014 24.6 10.4 68 91-191 61-128 (328)
214 PRK13805 bifunctional acetalde 25.4 1.4E+02 0.003 34.8 6.2 32 169-200 528-559 (862)
215 cd06291 PBP1_Qymf_like Ligand 24.6 5.8E+02 0.012 23.8 9.8 67 93-192 1-67 (265)
216 cd06354 PBP1_BmpA_PnrA_like Pe 24.5 5.7E+02 0.012 24.3 9.6 63 93-189 1-66 (265)
217 COG1303 Uncharacterized protei 24.5 3E+02 0.0066 25.8 6.9 90 95-202 34-124 (179)
218 cd06335 PBP1_ABC_ligand_bindin 24.3 4.4E+02 0.0094 26.3 9.0 60 152-214 162-224 (347)
219 PRK04155 chaperone protein Hch 24.1 7.2E+02 0.016 25.1 10.4 39 169-207 134-180 (287)
220 cd06320 PBP1_allose_binding Pe 24.0 6.1E+02 0.013 23.8 14.2 92 93-219 1-92 (275)
221 PF00731 AIRC: AIR carboxylase 23.9 67 0.0015 29.5 2.7 50 163-218 38-87 (150)
222 TIGR00262 trpA tryptophan synt 23.5 2.2E+02 0.0047 28.2 6.4 50 168-219 103-152 (256)
223 TIGR01302 IMP_dehydrog inosine 23.2 5.5E+02 0.012 27.5 9.9 102 169-289 252-358 (450)
224 COG0602 NrdG Organic radical a 23.1 2.2E+02 0.0047 27.4 6.2 81 121-210 4-102 (212)
225 PLN02204 diacylglycerol kinase 22.9 80 0.0017 35.3 3.5 70 124-197 160-235 (601)
226 TIGR00676 fadh2 5,10-methylene 22.7 1.1E+02 0.0023 30.5 4.1 50 168-217 74-135 (272)
227 PRK06843 inosine 5-monophospha 22.6 8.1E+02 0.018 26.1 10.8 123 147-288 156-286 (404)
228 PTZ00063 histone deacetylase; 22.5 3.2E+02 0.0069 29.5 7.8 97 108-228 236-332 (436)
229 cd06342 PBP1_ABC_LIVBP_like Ty 22.5 4.1E+02 0.0089 25.9 8.3 101 105-214 117-221 (334)
230 cd06282 PBP1_GntR_like_2 Ligan 22.4 6.2E+02 0.014 23.4 10.3 84 94-215 2-85 (266)
231 PRK08007 para-aminobenzoate sy 22.4 1.2E+02 0.0025 28.3 4.1 42 174-215 37-78 (187)
232 PRK15404 leucine ABC transport 22.1 4.8E+02 0.01 26.6 8.9 62 150-214 183-247 (369)
233 cd06275 PBP1_PurR Ligand-bindi 22.0 6.5E+02 0.014 23.4 11.0 67 94-193 2-68 (269)
234 PF04122 CW_binding_2: Putativ 21.9 1.1E+02 0.0023 24.9 3.4 36 157-194 51-86 (92)
235 TIGR03652 FeS_repair_RIC iron- 21.9 66 0.0014 30.9 2.3 26 170-197 9-34 (216)
236 COG0414 PanC Panthothenate syn 21.9 1.3E+02 0.0029 30.4 4.5 24 252-275 19-43 (285)
237 cd06326 PBP1_STKc_like Type I 21.9 5.6E+02 0.012 25.0 9.1 102 104-215 118-223 (336)
238 TIGR02826 RNR_activ_nrdG3 anae 21.8 2.3E+02 0.005 25.6 5.7 42 168-210 47-91 (147)
239 cd06300 PBP1_ABC_sugar_binding 21.7 6.7E+02 0.015 23.5 10.6 93 93-218 1-94 (272)
240 cd06337 PBP1_ABC_ligand_bindin 21.5 2.4E+02 0.0053 28.4 6.5 62 152-216 172-236 (357)
241 cd06268 PBP1_ABC_transporter_L 21.5 6.2E+02 0.013 23.5 9.0 46 167-215 177-222 (298)
242 PRK12767 carbamoyl phosphate s 21.4 6.6E+02 0.014 24.8 9.6 40 168-208 57-96 (326)
243 PLN00197 beta-amylase; Provisi 21.3 5.8E+02 0.012 28.5 9.4 100 169-268 129-278 (573)
244 cd06347 PBP1_ABC_ligand_bindin 21.2 4.2E+02 0.0091 25.7 8.0 58 154-214 162-222 (334)
245 TIGR01861 ANFD nitrogenase iro 21.2 2.5E+02 0.0055 30.8 6.9 40 159-198 207-246 (513)
246 PRK07649 para-aminobenzoate/an 21.1 1.1E+02 0.0025 28.7 3.7 50 175-237 38-87 (195)
247 TIGR01769 GGGP geranylgeranylg 21.0 3E+02 0.0065 26.5 6.6 57 168-226 12-70 (205)
248 TIGR01501 MthylAspMutase methy 21.0 5.2E+02 0.011 23.1 7.8 85 93-192 3-93 (134)
249 KOG4180 Predicted kinase [Gene 20.9 52 0.0011 34.1 1.4 29 181-215 106-135 (395)
250 TIGR00696 wecB_tagA_cpsF bacte 20.8 2.5E+02 0.0054 26.2 5.9 85 92-189 49-134 (177)
251 KOG4435 Predicted lipid kinase 20.4 1.5E+02 0.0033 31.7 4.7 50 169-221 106-155 (535)
252 PRK03359 putative electron tra 20.4 3.1E+02 0.0068 27.2 6.8 52 171-223 71-127 (256)
253 PRK14462 ribosomal RNA large s 20.2 1E+03 0.022 24.9 11.1 162 95-272 163-349 (356)
254 PRK12360 4-hydroxy-3-methylbut 20.2 2.4E+02 0.0052 28.5 6.0 51 168-220 198-248 (281)
255 KOG2749 mRNA cleavage and poly 20.1 2.4E+02 0.0052 29.9 6.0 57 154-217 211-272 (415)
No 1
>PLN02564 6-phosphofructokinase
Probab=100.00 E-value=1.4e-110 Score=872.89 Aligned_cols=428 Identities=87% Similarity=1.360 Sum_probs=400.4
Q ss_pred CCCCceecCCCCcccccccchhhhCCCCCCCcCCCCCCcccccccccccccChhHHHHHHhccCCCCcccccccCCcccc
Q 013518 6 NLQLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRGTHFRRAGPRQKV 85 (441)
Q Consensus 6 ~~~~~~~~~~~~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~~~~~~f~~~~~r~~~ 85 (441)
..+.|+++++..+.+|.||||.++.|+.|.+++||..|+.++.....||++++.|+..+...+...++..|+++|||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~agpr~~i 81 (484)
T PLN02564 2 SSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRGTHFRRAGPRQKV 81 (484)
T ss_pred CCcCccccCCCceeeccCcchhhcCCCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccccCCccceecCCcceE
Confidence 45789999999999999999999999999999999999999988899999999999887765555678899999999999
Q ss_pred cccCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC
Q 013518 86 YFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG 165 (441)
Q Consensus 86 ~~~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~ 165 (441)
||+|+++|||||||||||||||++||++|+.+.+.|++.+||||++||+||+++++++|+|+.|++|+++|||+|||||+
T Consensus 82 ~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTsR~ 161 (484)
T PLN02564 82 YFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRG 161 (484)
T ss_pred EEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCceeccCCC
Confidence 99999999999999999999999999999988777787899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHH
Q 013518 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 245 (441)
Q Consensus 166 ~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~ 245 (441)
++++++++++|++++||+||+|||||||++|++|+++++++|++|+||||||||||||++||+|||||||+++++++|++
T Consensus 162 ~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~~~~~aI~~ 241 (484)
T PLN02564 162 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 241 (484)
T ss_pred cchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChh---hH-HHHHh--------------------
Q 013518 246 AHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLE---GE-ESLQS-------------------- 301 (441)
Q Consensus 246 i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~---~~-e~l~~-------------------- 301 (441)
++++|.|+++||||||+|||+|||||++++||+++||+|||||.||+++ ++ +.+++
T Consensus 242 i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VIVVAEGagq~~ 321 (484)
T PLN02564 242 AHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVVAEGAGQDL 321 (484)
T ss_pred HHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEEEEeCCCccch
Confidence 9999999988999999999999999999999996699999999999999 34 11110
Q ss_pred -------hhhhhccCCcchhhhHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcC
Q 013518 302 -------MNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG 374 (441)
Q Consensus 302 -------~~~~d~~G~~~l~~i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G 374 (441)
..++|++||+++.+++.+|+++|+++++.+.++.+++|+++|||+|||++|+++||+||++||+.|||++++|
T Consensus 322 ~~~~~~~~~~~Da~Gn~~l~dig~~La~~I~~~~~~~~~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG 401 (484)
T PLN02564 322 IAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAG 401 (484)
T ss_pred hhhhhcccccccccCCcccCcHHHHHHHHHHHHhhhcccCCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcC
Confidence 0236999999999999999999999985444556789999999999999999999999999999999999999
Q ss_pred CCceEEEEECCeEEeechhhhhhcCCccCcCHHHHHHHHHhcCCCCCCChHHHHHhhhc
Q 013518 375 YTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKRE 433 (441)
Q Consensus 375 ~tg~mVg~~~~~~~~vPl~~v~~~~k~v~~~~~~~~~~l~~t~qp~~~~~~~~~~~~~~ 433 (441)
+||+||+++|++++++||++++..+|+|++++.+|.++|++||||+|+.+++....+++
T Consensus 402 ~tg~mVg~~~~~~~~vPi~~~~~~~~~v~~~~~~w~~~l~~t~qp~f~~~~~~~~~~~~ 460 (484)
T PLN02564 402 YTGFTVGPVNGRHAYIPFYRITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAKRE 460 (484)
T ss_pred CCCEEEEEECCEEEEEEHHHHhccCCccCCChHHHHHHHHHcCCCCccCchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999998877665544
No 2
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=3e-102 Score=807.26 Aligned_cols=390 Identities=51% Similarity=0.845 Sum_probs=359.2
Q ss_pred CCCCcCCCCCCcccccccccccccChhHHHHHHhccC------CCCcccccccCCcccccccCCCeeEEEEccCCCCcch
Q 013518 33 LPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKD------SPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGL 106 (441)
Q Consensus 33 ~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~------~~~~~~f~~~~~r~~~~~~~~~~~iaIl~sGG~apGm 106 (441)
.+.+++||..+...+... .||++++.|+..+..... ..+...|+++|||+++||+|+++||||+|||||||||
T Consensus 17 ~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~p~~~riaIvtsGG~~PGm 95 (443)
T PRK06830 17 ECKIPSPLIYSLAAGDTT-HFVSDSDRVLFDVSLSLIKEEDAPGTEPPSFEKAGPREKIYFDPSKVKAAIVTCGGLCPGL 95 (443)
T ss_pred CCCCCCcccccccccccc-eecCCCceEEEecccccccccccCccccchhhhcCCcceeEEcCcccEEEEECCCCCchHH
Confidence 466788998877776666 899999999887654322 1355789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEccccccccc---CCeeeCChhhhhccccccccccccccCCCCHHHHHHHHHHhCCCE
Q 013518 107 NTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---KNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQ 183 (441)
Q Consensus 107 Na~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~---~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i~~~l~~~~Id~ 183 (441)
|++||++|+.+.+.|++.+||||++||+||++ +++++|+|+.|++|+++|||+|||||+++++++++++|++++||+
T Consensus 96 N~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GGTiLGTsR~~~~~~~iv~~L~~~~I~~ 175 (443)
T PRK06830 96 NDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGGTILGSSRGPQDPEEIVDTLERMNINI 175 (443)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCCccccCCCCchhHHHHHHHHHHcCCCE
Confidence 99999999999877787899999999999998 899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHHHHhhhcCCceEEEEEec
Q 013518 184 VYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLM 263 (441)
Q Consensus 184 LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i~~~a~s~~~rv~iVEvM 263 (441)
||+|||||||++|++|++++++++++|+||||||||||||++||+|||||||+++++++|++++++|.|+++||||||+|
T Consensus 176 L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~a~~aI~~~~~eA~s~~~rv~iVEvM 255 (443)
T PRK06830 176 LFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKATEAIRCAHVEANGAPNGIGLVKLM 255 (443)
T ss_pred EEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCccHHHHHHhhccCCCCEEEcCCCCCChh---hH-HHHHh-----------------------hhhhhccCCcchhhh
Q 013518 264 GRYCGFIAMYATLGSRDVDCCLIPESPFYLE---GE-ESLQS-----------------------MNQQDASGNKLLQDV 316 (441)
Q Consensus 264 Gr~~G~LA~~~aLA~~~ad~iliPE~~~~l~---~~-e~l~~-----------------------~~~~d~~G~~~l~~i 316 (441)
||+|||||++++||+++||+|||||.||+++ ++ +.+++ ..++|++||+++.++
T Consensus 256 GR~sG~lA~~aaLA~~~ad~ilIPE~~f~l~~~~~ll~~l~~r~~~~~~~VIVVAEGag~~l~~~~~~~Da~gn~~l~~i 335 (443)
T PRK06830 256 GRHSGFIAAYAALASKDVNFVLIPEVPFDLEGPNGLLAALEKRLAERGHAVIVVAEGAGQELFDDTGETDASGNPKLGDI 335 (443)
T ss_pred CCcccHHHHHHHHhcCCCCEEEecCCCCCchhHHHHHHHHHHHHHhCCceEEEEecCcccccccccccccccCCcccccH
Confidence 9999999999999986799999999999999 44 21110 123689999999999
Q ss_pred HHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCeEEeechhhhh
Q 013518 317 GLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRIN 396 (441)
Q Consensus 317 ~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~~~~~vPl~~v~ 396 (441)
+.+|+++|+++++. .++.+++||++|||+|||++||++||+||++||++|||++++|+||+|||+++++++++||++++
T Consensus 336 g~~L~~~i~~~~~~-~~~~~~~r~~~pgy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg~~~~~~~~vPl~~v~ 414 (443)
T PRK06830 336 GLFLKDRIKEYFKA-RGIPINLKYIDPSYIIRSVPANANDSVYCGFLGQNAVHAAMAGKTGMVVGRWNNRFVHLPIDLAV 414 (443)
T ss_pred HHHHHHHHHHHhcc-cCCceEEEEccCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEeHHHHh
Confidence 99999999999963 24457899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccCcCHHHHHHHHHhcCCCCCCCh
Q 013518 397 ERQNQVVITDRMWARVLSSTNQPSFLSA 424 (441)
Q Consensus 397 ~~~k~v~~~~~~~~~~l~~t~qp~~~~~ 424 (441)
..+|++++++.+|+++|++||||.|+.+
T Consensus 415 ~~~k~vd~~~~~w~~~l~~tgq~~~~~~ 442 (443)
T PRK06830 415 SKRKKVNPEGDLWRSVLESTGQPRSMGN 442 (443)
T ss_pred ccCCCCCCccHHHHHHHHHhCCCccccc
Confidence 9889999999999999999999999864
No 3
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=100.00 E-value=6.3e-102 Score=808.54 Aligned_cols=412 Identities=49% Similarity=0.814 Sum_probs=365.9
Q ss_pred cccccchhhhCCC--CCCCcCCCCCCccccccc--------ccccccChhHHHHHHhccC--CCCcccccccCCcccccc
Q 013518 20 LEDVPHLTDYIPD--LPTYPNPLQFNAAYSVVK--------QYFVNVDDTVSQKIVVHKD--SPRGTHFRRAGPRQKVYF 87 (441)
Q Consensus 20 ~eav~~l~~~~p~--~p~~~~~l~~n~~~~~~~--------~~~v~~t~~v~~~~~~~~~--~~~~~~f~~~~~r~~~~~ 87 (441)
+|.|.+|.-..|+ +|...++.-+...++.|+ ..||++++.|+..+...+. ..+...|+++|||+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~agpr~~~~f 83 (459)
T PTZ00286 4 IERVNNLIIDLPDAPLPSVVNPDLGECNLRGVFGGNGFLPREAFVDTNSYILSTPRFGPDDVIVNTKRWLRAGPRKHLYF 83 (459)
T ss_pred eecccccccCCccccCCCcccccCCcCCCCCCccccccCCccceecCCCeEEeecccCccccccccchheecCCceeEEE
Confidence 3555555544442 344444444444444443 4799999999988765442 235679999999999999
Q ss_pred cCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCC
Q 013518 88 VSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH 167 (441)
Q Consensus 88 ~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (441)
+|+++|||||||||||||||++||++|+++.+.|++.+||||++||+||+++++++|+|+.|++|+++|||+|||||+++
T Consensus 84 ~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTSR~~~ 163 (459)
T PTZ00286 84 NPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGTILGSSRGGF 163 (459)
T ss_pred cccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCceeccCCChh
Confidence 99999999999999999999999999999987788889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHHH
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAH 247 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i~ 247 (441)
++++++++|++++||+||+|||||||++|.+|++++++++++|+||||||||||||++||+|||||||+++++++|++++
T Consensus 164 ~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~~~~aI~~~~ 243 (459)
T PTZ00286 164 DPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEEAQNAIRAAY 243 (459)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHh-------------------------
Q 013518 248 VEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQS------------------------- 301 (441)
Q Consensus 248 ~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~------------------------- 301 (441)
++|.|+++||||||+|||+|||||++++||+++||+|||||.||+++++ +.++.
T Consensus 244 ~eA~S~~~~v~iVEvMGR~sG~LAl~aaLA~~~ad~vlIPE~~f~l~~ll~~l~~r~~~~~~~VIVVaEGa~~~~~~~~~ 323 (459)
T PTZ00286 244 VEAKSAKNGVGIVKLMGRDSGFIALHASVASADVNVCLIPEFDIPLEGVLEYIEQRLQKKGHCVIVVAEGAGQSLKDADL 323 (459)
T ss_pred HHHHHhcCcEEEEEecCcchhHHHHHHhhhhcCCCEEEeCCCCCCHHHHHHHHHHHHhcCCcEEEEEecCCccccccccc
Confidence 9999998899999999999999999999999559999999999999987 21110
Q ss_pred hhhhhccCCcchhhhHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEE
Q 013518 302 MNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVG 381 (441)
Q Consensus 302 ~~~~d~~G~~~l~~i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg 381 (441)
..++|++||+++.+++.+|+++|+++++.+ +..+++||++|||+|||++|+++||+||++||+.|||++++|+||+||+
T Consensus 324 ~~~~D~~Gn~~l~dig~~L~~~I~~~~~~~-~~~~~~r~~~~gy~qRg~~psa~Dr~~a~~lG~~AV~~~~~G~tg~~Vg 402 (459)
T PTZ00286 324 DLGTDASGNKKLWDIGVYLKDEITKYLKKK-KPEHTVKYIDPSYMIRAVPANAADAKFCTQLAQNAVHGAMAGFTGFIIG 402 (459)
T ss_pred cccccccCCcccccHHHHHHHHHHHHHhhc-cCceEEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Confidence 023589999999999999999999999643 4567899999999999999999999999999999999999999999999
Q ss_pred EECCeEEeechhh-hhhcCCccCcCHHHHHHHHHhcCCCCCCChHHHHHhhh
Q 013518 382 PVNGRHAYIPFNR-INERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKR 432 (441)
Q Consensus 382 ~~~~~~~~vPl~~-v~~~~k~v~~~~~~~~~~l~~t~qp~~~~~~~~~~~~~ 432 (441)
+++++++++||++ +...+|++++++.+|++++++||||+|+.+++.+..++
T Consensus 403 ~~~~~~~~vPl~~v~~~~~~~v~~~~~~w~~~~~~tgqp~~~~~~~~~~~~~ 454 (459)
T PTZ00286 403 HVHNNYVMIPIKEMSGNYRRRVNPEGRLWQRMLAITGQPSFLNNEEIERHQR 454 (459)
T ss_pred EECCEEEEEeHHHHhCCCccccCcchHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 9999999999999 45677889999999999999999999999876655443
No 4
>PLN02884 6-phosphofructokinase
Probab=100.00 E-value=2.2e-96 Score=758.47 Aligned_cols=348 Identities=56% Similarity=0.931 Sum_probs=321.1
Q ss_pred cccccccCCcccccccCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC--eeeCChhhhh
Q 013518 73 GTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN--TINLTPKVVN 150 (441)
Q Consensus 73 ~~~f~~~~~r~~~~~~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~--~~~L~~~~v~ 150 (441)
...|.|+|||+++||+|.++|||||||||||||||++||++|+.+. .++..+||||++||+||++++ .++|+|++|+
T Consensus 35 ~~~~~~agpr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~-~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~ 113 (411)
T PLN02884 35 EQWVHRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLE-IYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQ 113 (411)
T ss_pred hhhhhhcCCceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHH-HcCCcEEEEEccCHHHHhCCCceeeecCHHHHH
Confidence 3578999999999999999999999999999999999999999875 366668999999999999998 6678899999
Q ss_pred ccccccccccccccCCCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCC
Q 013518 151 DIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSF 230 (441)
Q Consensus 151 ~~~~~GGs~LGssR~~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~ 230 (441)
+|+++|||+|||||++.++++++++|++++||+||+|||||||++|++|+++++++|++++||||||||||||++||+||
T Consensus 114 ~i~~~GGt~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~Ti 193 (411)
T PLN02884 114 NIHLSGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTF 193 (411)
T ss_pred HHHhCCCceeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChh---hH-HHHHh-----
Q 013518 231 GFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLE---GE-ESLQS----- 301 (441)
Q Consensus 231 GfdTA~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~---~~-e~l~~----- 301 (441)
|||||+|+++++|++++++|.|+++||||||+|||+|||||+++|||++.||+|||||.||+++ ++ +.++.
T Consensus 194 GFdTAv~~~~~ai~~l~~tA~s~~~rv~iVEvMGR~aG~LAl~aalA~g~ad~ilIPE~~f~~~~~~~~~~~i~~~~~~k 273 (411)
T PLN02884 194 GFDTAVEEAQRAINSAYIEAHSAYHGIGLVKLMGRSSGFIAMHASLASGQVDICLIPEVPFTLDGPNGVLRHLEHLIETK 273 (411)
T ss_pred CHHHHHHHHHHHHHHHHHhhhccCCcEEEEEeCCCCHHHHHHHHHHhcCCCCEEEeCCCCCCcccHHHHHHHHHHHHhcC
Confidence 9999999999999999999988667899999999999999999999993399999999999994 33 11110
Q ss_pred ------------------hhhhhccCCcchhhhHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHH
Q 013518 302 ------------------MNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLL 363 (441)
Q Consensus 302 ------------------~~~~d~~G~~~l~~i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~l 363 (441)
...+|++||+++.+++.+|+++|+++++ +.+..+++|+++|||+|||++|+++||++|++|
T Consensus 274 ~~~iIVVAEG~g~~~~~~~~~~Da~G~~~l~~~~~~La~~i~~~~~-~~g~~~~~r~~~lGy~qRgg~p~a~Dr~la~~l 352 (411)
T PLN02884 274 GSAVVCVAEGAGQDLLQKTNATDASGNPVLGDIGVHLQQEIKKHFK-DIGVPADVKYIDPTYMIRACRANASDAILCTVL 352 (411)
T ss_pred CcEEEEEecccccccccccccccccCCcccCcHHHHHHHHHHHHhh-ccCCCceEEEccCCccccCCCCCHHHHHHHHHH
Confidence 0126899999999999999999999875 223345789999999999999999999999999
Q ss_pred HHHHHHHHHcCCCceEEEEECCeEEeechhhhhhcCCccCcCHHHHHHHHHhcCCCCCC
Q 013518 364 AQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSFL 422 (441)
Q Consensus 364 G~~AV~~~~~G~tg~mVg~~~~~~~~vPl~~v~~~~k~v~~~~~~~~~~l~~t~qp~~~ 422 (441)
|.+||+++++|+||+||++++++++++||+++++.+|++++++++|+++|.+||||+|.
T Consensus 353 G~~AV~~~~~G~sg~mV~l~~~~~~~vpl~~v~~~~k~vd~~~~~~~~~~~~~gqp~~~ 411 (411)
T PLN02884 353 GQNAVHGAFAGFSGITVGICNTHYVYLPIPEVIAYPRRVDPNSRMWHRCLTSTGQPDFH 411 (411)
T ss_pred HHHHHHHHHcCCCCeEEEEECCEEEEEeHHHHhcCCCCCCCCcHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999998899999999999999999999983
No 5
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=100.00 E-value=2.5e-84 Score=664.46 Aligned_cols=322 Identities=26% Similarity=0.444 Sum_probs=289.3
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChh--hh-hccccccccccccccCCC-
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPK--VV-NDIHKRGGTILGTSRGGH- 167 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~--~v-~~~~~~GGs~LGssR~~~- 167 (441)
+||||+||||||||||++||++++.+...+.+.+|||+++||+||+++++++|++. ++ +.|+++|||+|||||++.
T Consensus 4 k~i~IltsGGdapGmNaaI~~vv~~a~~~~~~~~V~G~~~G~~GL~~~~~~~l~~~~~~~~~~i~~~GGt~LGtsR~~~~ 83 (403)
T PRK06555 4 KKVALLTAGGLAPCLSSAVGGLIERYTEIAPEVEIIAYRSGYQGLLLGDSIEITPAVRANAGLLHRYGGSPIGNSRVKLT 83 (403)
T ss_pred CEEEEECCCCCchhHHHHHHHHHHHHHhhcCCcEEEEEecCHHHhcCCCceeCChhHhhhhhHHHhCCCceeccCCCCcc
Confidence 59999999999999999999999977544456799999999999999999999986 44 459999999999999743
Q ss_pred ----------------CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCC
Q 013518 168 ----------------DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFG 231 (441)
Q Consensus 168 ----------------~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~G 231 (441)
++++++++|++++||+||+||||||+++|++|+++++++++.|+||||||||||||++||+|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~G 163 (403)
T PRK06555 84 NVADCVKRGLVKEGENPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLG 163 (403)
T ss_pred ccchhccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcC
Confidence 2678999999999999999999999999999999999888899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhcc-------------------CCCCEEEcCCCCCC
Q 013518 232 FDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGS-------------------RDVDCCLIPESPFY 292 (441)
Q Consensus 232 fdTA~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~-------------------~~ad~iliPE~~~~ 292 (441)
|+||+++++++|+++++||.|+++.++|||||||+|||||+++|||+ ++||+|||||.||+
T Consensus 164 f~TA~~~~~~ai~~l~~ta~s~~r~~~vvEvMGR~aG~LAl~aalA~~~~~~~~~~~~~~~~~~~~~gad~ilIPE~~~~ 243 (403)
T PRK06555 164 AWTAAEQGARFFDNVINEHSANPRMLIIHEVMGRNCGWLTAATARAYREWLDRQEYVPGFGLSAERWDIHAVYLPEMAFD 243 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEEccCCchHHHHHHHHHhhccccccccccccccccccCCCCcEEEccCCCCC
Confidence 99999999999999999999988666666999999999999999992 37999999999999
Q ss_pred hhhH-HHHHh------------------------------hhhhhccCCcchhh--hHHHHHHHHHHHhccccceeeeee
Q 013518 293 LEGE-ESLQS------------------------------MNQQDASGNKLLQD--VGLWISHKIKDHFARLHKMAINLK 339 (441)
Q Consensus 293 l~~~-e~l~~------------------------------~~~~d~~G~~~l~~--i~~~l~~~I~~~~~~~~~~~~~~r 339 (441)
++.+ +.++. ..++|++||.++.+ ++.+|+++|+++++.+ .+|
T Consensus 244 ~e~~~~~ik~~~~~k~~~iIvVaEG~~~~~~~~~~~~~g~~~~~Da~G~~~l~~~~~g~~la~~i~~~~g~e-----~~r 318 (403)
T PRK06555 244 LEAEAERLKAVMDEVGNVNIFLSEGAGLDAIVAEMEAAGEEVKRDAFGHVKLDTINPGAWFAKQFAELLGAE-----KVM 318 (403)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCCcccchhhhhhccCccccccccceecCCCcHHHHHHHHHHHHhCCC-----ceE
Confidence 9987 11110 01268899999876 5889999999988642 267
Q ss_pred eeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEE---ECCeEEeechhhhhhcCCccCcCHHHHHHHHHhc
Q 013518 340 YIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGP---VNGRHAYIPFNRINERQNQVVITDRMWARVLSST 416 (441)
Q Consensus 340 ~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~---~~~~~~~vPl~~v~~~~k~v~~~~~~~~~~l~~t 416 (441)
+++|||+|||++|+++||++|++||..||+++++|+|| ||++ +|++++++||+++.. +|+++++.+||.++|.+|
T Consensus 319 ~~~lGy~qRgg~psa~Dr~la~~lG~~AV~~~~~G~sg-~v~~~~~~~g~~~~vp~~~~~~-~k~~~~~~~~~~~~~~~~ 396 (403)
T PRK06555 319 VQKSGYFARSAPANAEDLRLIKSMVDLAVECALRGVSG-VIGHDEEQGGKLRAIEFPRIKG-GKAFDTSTPWFTELLDEI 396 (403)
T ss_pred EecCChhhcCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-eEEEEeeeCCEEEEEEHHHHhc-CCCCCCCHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999 6788 799999999999887 588999999999999999
Q ss_pred CCCC
Q 013518 417 NQPS 420 (441)
Q Consensus 417 ~qp~ 420 (441)
|||.
T Consensus 397 ~q~~ 400 (403)
T PRK06555 397 GQPY 400 (403)
T ss_pred CCCC
Confidence 9996
No 6
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=8.8e-84 Score=703.26 Aligned_cols=389 Identities=21% Similarity=0.256 Sum_probs=330.3
Q ss_pred cccccccchhhhCCCCCCCcCCCCCCcccccccccccccChhHHHHHHhccCC-----CCcccccccC--------Cccc
Q 013518 18 YVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG--------PRQK 84 (441)
Q Consensus 18 ~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~--------~r~~ 84 (441)
++++||.+|++.+|++|.+++.+.+|++++.|++++|+.|+.|.++|+ +++| +|+++|.+++ ++..
T Consensus 304 ~G~~AV~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~~ 382 (762)
T cd00764 304 MGVEAVMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMD-EKRFDEAAALRGKSFDKNWNLYKLLAIELPQ 382 (762)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhh-hhhHHHHHHhcchhHHHHHHHHHhccccCCc
Confidence 569999999999999999999999999999999999999999999998 7787 7999999886 1111
Q ss_pred ccccCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccccccccc
Q 013518 85 VYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR 164 (441)
Q Consensus 85 ~~~~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR 164 (441)
.....+++||||+||||||||||++||++++++. +.+++||||++||+||+++++++|+|.+|++|+++|||+|||+|
T Consensus 383 ~~~~~~~~~IaIltsGG~apGmNaairavv~~a~--~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT~R 460 (762)
T cd00764 383 PLPEKTNLNIAIVNVGAPAAGMNAAVRSAVRYGL--AHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGTKR 460 (762)
T ss_pred cCCcccccEEEEEecCCCchhHHHHHHHHHHHHH--HCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccccC
Confidence 1122344899999999999999999999999885 34689999999999999999999999999999999999999999
Q ss_pred CC--CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc-CCCceEEEeeccccCCCCCCCCCCChhhHHHHHHH
Q 013518 165 GG--HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQR 241 (441)
Q Consensus 165 ~~--~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~ 241 (441)
+. +++++++++|++++||+||+|||||||++|++|++++.++ .+.|+||+|||||||||++||+|||||||+|++++
T Consensus 461 ~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~~~~ 540 (762)
T cd00764 461 TLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNALMK 540 (762)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHHHHH
Confidence 85 5799999999999999999999999999999999987666 47899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH----HHHHh-hhhhhccCCcc---h
Q 013518 242 AINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE----ESLQS-MNQQDASGNKL---L 313 (441)
Q Consensus 242 ~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~----e~l~~-~~~~d~~G~~~---l 313 (441)
+||+++++|+|+++||||||||||+|||||+++|||+ +||+|||||.+|+++++ +.+.+ ..+....|+.. .
T Consensus 541 ~id~i~~tA~s~~~RvfVVEvMGR~~G~LA~~aglA~-GAd~i~iPE~~~~~~~l~~dv~~l~~~~~~~~~~g~~~~~~~ 619 (762)
T cd00764 541 YCDRIKQSASGTKRRVFIVETMGGYCGYLATMTGLAV-GADAAYVFEEPFNIRDLQENVEHLTEKMKTTIGRGLVLRNEK 619 (762)
T ss_pred HHHHHHHHHhhcCCeEEEEEeCCCCccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEeeee
Confidence 9999999999988899999999999999999999999 79999999999999987 22211 11112223221 0
Q ss_pred hhh---HHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcC---------------C
Q 013518 314 QDV---GLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG---------------Y 375 (441)
Q Consensus 314 ~~i---~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G---------------~ 375 (441)
... ...+++.+.++.+. .+.+|+..|||+||||.|+++||++|++||.+||+++.+. .
T Consensus 620 ~se~~~~~~~~~~~~~~~~~----~~~~R~~vLGh~QrGG~Ps~~DR~latr~g~~Av~~l~~~~~~~~~~~~~~~~~~~ 695 (762)
T cd00764 620 CNENYTTVFTYELYSEEGKG----VFDCRTNVLGHVQQGGAPSPFDRNFGTKFAVKAMKWIEQKLKENYAAGNEFANDPD 695 (762)
T ss_pred eecCCccccHHHHHHHHHhc----CCceEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCC
Confidence 111 12244444444431 2567899999999999999999999999999999999884 3
Q ss_pred CceEEEEECCeEEeechhhhhhcC-CccCcCHHHHHHHHH
Q 013518 376 TGFTVGPVNGRHAYIPFNRINERQ-NQVVITDRMWARVLS 414 (441)
Q Consensus 376 tg~mVg~~~~~~~~vPl~~v~~~~-k~v~~~~~~~~~~l~ 414 (441)
+.+++|+++.++++.|+.++.+.. ..-.|+..||..+..
T Consensus 696 ~~~~ig~~~~~~~~~~~~~~~~~~~~~r~p~~~~w~~~~~ 735 (762)
T cd00764 696 FNCVNGVKKYAVLFEPVEELKQTTFEHRIPKEQWWLSLRP 735 (762)
T ss_pred ceEEEEEeCCEEEEeeHHHHHHhhhhcCCCcchhhHhHHH
Confidence 789999999999999999988743 112266778876533
No 7
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=2.8e-83 Score=701.76 Aligned_cols=389 Identities=22% Similarity=0.268 Sum_probs=334.4
Q ss_pred cccccccchhhhCCCCCCCcCCCCCCcccccccccccccChhHHHHHHhccCC-----CCcccccccC----------Cc
Q 013518 18 YVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG----------PR 82 (441)
Q Consensus 18 ~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~----------~r 82 (441)
++.+||.+|++.+++++.+++.+++|+..+.|++++++.|+.|..++. +++| +|+++|.++. ++
T Consensus 301 ~G~~Av~~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~~r~~~f~~~~~~~~~~~~~~~~ 379 (745)
T TIGR02478 301 QGVEAVLAVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIK-EKRFAEAMRLRGREFVENLATFLFLSIPDQD 379 (745)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHH-hccHHHHHHhcCHHHHHHHHHHHhhhccCCc
Confidence 568999999999999999999999999999999999999999999987 7887 6999998875 22
Q ss_pred ccccc-cCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccc
Q 013518 83 QKVYF-VSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILG 161 (441)
Q Consensus 83 ~~~~~-~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LG 161 (441)
....+ ..+++||||+||||||||||++||++++++.+ .+.+||||++||+||+++++.+|+|.+|++|+++|||+||
T Consensus 380 ~~~~~~~~~~~rIaIltsGG~apGmNaair~vv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~Lg 457 (745)
T TIGR02478 380 KKLVPSKASRLRIAIIHVGAPAGGMNAATRSAVRYAIA--RGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSELG 457 (745)
T ss_pred cccCCCCCCceEEEEEecCCCchhHHHHHHHHHHHHHh--CCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCcccc
Confidence 22222 34558999999999999999999999998853 4579999999999999999999999999999999999999
Q ss_pred cccCC--CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc-CCCceEEEeeccccCCCCCCCCCCChhhHHHH
Q 013518 162 TSRGG--HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (441)
Q Consensus 162 ssR~~--~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~ 238 (441)
|+|+. +++++++++|++++||+||+||||||+++|.+|+++..++ ++.|+||||||||||||++||+|||||||+|+
T Consensus 458 tsR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~~ 537 (745)
T TIGR02478 458 TNRELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNE 537 (745)
T ss_pred cCCCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHHH
Confidence 99984 4789999999999999999999999999999999886555 47799999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhhhhhhccC----Ccch
Q 013518 239 AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSMNQQDASG----NKLL 313 (441)
Q Consensus 239 ~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~~~~d~~G----~~~l 313 (441)
++++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||.+|+++++ +.++...++...| ...+
T Consensus 538 ~~~~id~i~~ta~s~~~rv~iVEvMGR~~G~LAl~~alA~-gad~iliPE~~~~~~~l~~~v~~i~~~~~~~~~~~~iiv 616 (745)
T TIGR02478 538 ITEYCDNIKQSASASKRRVFVVETMGGYSGYLATMAGLAT-GADAAYIPEEGISLKDLQEDIEHLKEKFAHGNRAGKLIL 616 (745)
T ss_pred HHHHHHHHHHhhHhcCCcEEEEEecCccccHHHHHHHhhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 9999999999999987899999999999999999999999 79999999999999988 2222222222222 2222
Q ss_pred hh-------hHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcC------------
Q 013518 314 QD-------VGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG------------ 374 (441)
Q Consensus 314 ~~-------i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G------------ 374 (441)
.. .+..|++.|++..+ . .+.+|+.+|||+|||+.|+++||++|++||.+||+++++|
T Consensus 617 ~~Eg~~~~~~~~~l~~~i~~e~~--~--~~~~R~~~LG~~QRgg~ps~~Dr~~a~~lG~~Av~~~~~~~~~~~~~~~~~~ 692 (745)
T TIGR02478 617 RNENASKNYTTDFIARIISEEAK--G--RFDARTAVLGHMQQGGSPSPFDRNRATRLAIRAVDFIEEKIKKSADKLGADD 692 (745)
T ss_pred EeCCCccCCCHHHHHHHHHHHhc--C--CCceEeccCCccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccccccccCC
Confidence 11 14567777765543 1 2458999999999999999999999999999999999998
Q ss_pred CCceEEEEECCeEEeechhhhhhcCCc---cCcCHHHHHHHHH
Q 013518 375 YTGFTVGPVNGRHAYIPFNRINERQNQ---VVITDRMWARVLS 414 (441)
Q Consensus 375 ~tg~mVg~~~~~~~~vPl~~v~~~~k~---v~~~~~~~~~~l~ 414 (441)
++++|||+++++++++||+++...... -.|...||..+..
T Consensus 693 ~~~~~vg~~~~~~~~~p~~~~~~~~~d~~~r~p~~~~w~~~~~ 735 (745)
T TIGR02478 693 TSAVVIGIRGSNVLFTPVKGLLAKETDFEHRRPKNQWWLDLRP 735 (745)
T ss_pred CccEEEEEECCEEEEEEHHHHHhhccCcccCCCCCchhhhHHH
Confidence 899999999999999999985543322 2267789987654
No 8
>PRK14071 6-phosphofructokinase; Provisional
Probab=100.00 E-value=6.8e-81 Score=636.14 Aligned_cols=307 Identities=28% Similarity=0.429 Sum_probs=278.2
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CeeeCChhhhhccccccccccccccC-C-
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRG-G- 166 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGssR~-~- 166 (441)
.+||||+||||||||||++||++++++.+.++ .+|||+++||+||+++ ++.+|+|.+|++|.++|||+|||||. .
T Consensus 4 ~~~I~IltsGG~apGmNa~i~~vv~~a~~~~g-~~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~ 82 (360)
T PRK14071 4 KKRIGILTSGGDCAGLNAVIRAVVHRARGTYG-WEVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGTILGTTNKGDP 82 (360)
T ss_pred CCEEEEECCCCCchhHHHHHHHHHHHHHhcCC-CEEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCceeccCCCCCc
Confidence 46999999999999999999999998865344 5999999999999999 89999999999999999999999973 1
Q ss_pred -----------CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhH
Q 013518 167 -----------HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTA 235 (441)
Q Consensus 167 -----------~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA 235 (441)
+++++++++|++++||+||+|||||||++|++|++. ..|+||||||||||||++||+||||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~-----~~i~vIgiPkTIDNDl~~td~t~Gf~TA 157 (360)
T PRK14071 83 FAFPMPDGSLRDRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQ-----GGINLVGIPKTIDNDVGATEVSIGFDTA 157 (360)
T ss_pred cccccccccchHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHh-----cCCcEEEecccccCCCcCcccCcChhHH
Confidence 135899999999999999999999999999999862 2578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHh-------------
Q 013518 236 VEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQS------------- 301 (441)
Q Consensus 236 ~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~------------- 301 (441)
+++++++||+++++|.|| +||||||||||+|||||+++|||+ +||+|||||.||+++++ +.+++
T Consensus 158 ~~~~~~~id~i~~ta~s~-~rv~ivEvMGR~~G~LAl~~~la~-ga~~iliPE~~~~~~~l~~~i~~~~~~~~~~~iivv 235 (360)
T PRK14071 158 VNIATEALDRLHFTAASH-NRVMILEVMGRDAGHIALAAGIAG-GADVILIPEIPYTLENVCKKIRERQEEGKNFCLVVV 235 (360)
T ss_pred HHHHHHHHHHHHhhhccc-CCEEEEEECCCCccHHHHHhHhhc-CCCEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEE
Confidence 999999999999999986 689999999999999999999999 89999999999999987 21211
Q ss_pred -----------hhhhhccCCcchhhhHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHH
Q 013518 302 -----------MNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHG 370 (441)
Q Consensus 302 -----------~~~~d~~G~~~l~~i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~ 370 (441)
..++|++||+++.+++++|+++|+++++.+ +|+..|||+|||+.|+++||++|++||.+||++
T Consensus 236 sEG~~~~~g~~~~~~d~~g~~~~~~~~~~l~~~i~~~~g~~------~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~ 309 (360)
T PRK14071 236 SEAVRTEEGEQVTKTQALGEDRYGGIGQYLAEQIAERTGAE------TRVTVLGHIQRGGIPSPRDRLLASAFGVAAVDL 309 (360)
T ss_pred cCCCcccccccccccccccccccCcHHHHHHHHHHHhcCCC------eeEEecChhhcCCCCChHHHHHHHHHHHHHHHH
Confidence 012578999999999999999999987643 567789999999999999999999999999999
Q ss_pred HHcCCCceEEEEECCeEEeechhhhhhcCCccCcCHHHHHH
Q 013518 371 AVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWAR 411 (441)
Q Consensus 371 ~~~G~tg~mVg~~~~~~~~vPl~~v~~~~k~v~~~~~~~~~ 411 (441)
+++|+||+||+++++++.++||+++++.+|.+++++.+|+.
T Consensus 310 ~~~G~t~~mv~~~~~~~~~vpl~~v~~~~~~v~~~~~~~~~ 350 (360)
T PRK14071 310 IAQGKFDRMVAWQNRQVVSVPIAEAIATYRAVDPEGTLVKT 350 (360)
T ss_pred HHcCCCCEEEEEECCEEEEEeHHHHhcCCCCCCccHHHHHH
Confidence 99999999999999999999999999888999997777764
No 9
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=100.00 E-value=2.2e-80 Score=622.59 Aligned_cols=295 Identities=29% Similarity=0.424 Sum_probs=262.5
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-----
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG----- 166 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~----- 166 (441)
+||||+||||||||||++||++++++.+ + +.+|||+++||+||+++++++|+|..+++|+++|||+|||||++
T Consensus 1 ~~IaIltsGG~apGmNa~i~~vv~~a~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~ 78 (317)
T cd00763 1 KRIGVLTSGGDAPGMNAAIRGVVRSAIA-E-GLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLGSARFPEFKDE 78 (317)
T ss_pred CEEEEEccCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeeccCCCCccCCH
Confidence 4899999999999999999999998864 3 46999999999999999999999999999999999999999984
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHH
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i 246 (441)
+++++++++|++++||+||+|||||||++|++|+++ + ++||||||||||||++||+|||||||+++++++++++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~----~--i~vigiPkTIDNDi~gtd~t~Gf~TA~~~~~~~i~~i 152 (317)
T cd00763 79 EGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTEH----G--FPCVGLPGTIDNDIPGTDYTIGFDTALNTVVEAIDRI 152 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHc----C--CCEEEecccccCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 247899999999999999999999999999999874 3 7899999999999999999999999999999999999
Q ss_pred HHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhhhhhhccCCc---chhhh----HH
Q 013518 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSMNQQDASGNK---LLQDV----GL 318 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~~~~d~~G~~---~l~~i----~~ 318 (441)
+++|+|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++++ +.++.. -..|+. .+..+ ..
T Consensus 153 ~~ta~s~-~rv~ivEvMGR~~G~LA~~~ala~-ga~~iliPE~~~~~~~~~~~i~~~---~~~g~~~~vivvaEG~~~~~ 227 (317)
T cd00763 153 RDTSSSH-QRISVVEVMGRHCGDIALAAGIAG-GAEFIVIPEAEFDREEVANRIKAG---IERGKKHAIVVVAEGVYDVD 227 (317)
T ss_pred HHHHhcC-CCEEEEEeCCCChHHHHHHHHHHc-CCCEEEeCCCCCCHHHHHHHHHHH---HHcCCCcEEEEEeCCCCCHH
Confidence 9999986 689999999999999999999999 79999999999999988 333322 122221 11111 35
Q ss_pred HHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCeEEeechhhhhhc
Q 013518 319 WISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINER 398 (441)
Q Consensus 319 ~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~~~~~vPl~~v~~~ 398 (441)
.|++.|+++++. ++|+..|||+|||++|+++||++|++||.+||+++++|++|+||+++++++.++||+++.+.
T Consensus 228 ~l~~~l~~~~g~------~~r~~~lG~~qRgg~p~~~Dr~~a~~lg~~Av~~~~~g~~~~mv~~~~~~~~~~pl~~~~~~ 301 (317)
T cd00763 228 ELAKEIEEATGF------ETRATVLGHIQRGGSPTAFDRILASRMGAYAVELLLAGKGGLAVGIQNEQLVHHDIIDAIEN 301 (317)
T ss_pred HHHHHHHHHhCC------CcceeccchhhcCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEEECCEEEEecHHHHhhC
Confidence 678888877653 35778899999999999999999999999999999999999999999999999999999988
Q ss_pred CCccCcC
Q 013518 399 QNQVVIT 405 (441)
Q Consensus 399 ~k~v~~~ 405 (441)
+|+++++
T Consensus 302 ~k~~~~~ 308 (317)
T cd00763 302 MKPFKKD 308 (317)
T ss_pred CCCCCHH
Confidence 8888763
No 10
>PRK14072 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.8e-80 Score=641.83 Aligned_cols=305 Identities=21% Similarity=0.338 Sum_probs=275.3
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhc---cccccccccccccCCC
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVND---IHKRGGTILGTSRGGH 167 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~---~~~~GGs~LGssR~~~ 167 (441)
.+||||+||||||||||++||++++++.+..+..+||||++||+||+++++++|+..++++ |.++|||+|||||++.
T Consensus 3 ~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~~G~~GLl~~~~~~l~~~~~~~i~~i~~~gGt~LgssR~~~ 82 (416)
T PRK14072 3 KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGARNGIIGILDEDLIDLSKESDEALAALAHTPSGALGSCRYKL 82 (416)
T ss_pred CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEecChHHhcCCCeeeCChhhHhHHHHHhcCCCeEeccCCCCC
Confidence 3699999999999999999999999886543337999999999999999999999887777 8999999999999853
Q ss_pred --------CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHH
Q 013518 168 --------DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEA 239 (441)
Q Consensus 168 --------~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~ 239 (441)
++++++++|++++||+||+|||||||++|++|+++++++|++++||||||||||||++||+|||||||++++
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~~i 162 (416)
T PRK14072 83 KSLEEDRAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKYI 162 (416)
T ss_pred cccccChHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHHHH
Confidence 378999999999999999999999999999999999888988999999999999999999999999999999
Q ss_pred HHHHHHH----HHhhhcCCceEEEEEecCCCccHHHHHHhhc-----cCCCCEEEcCCCCCChhhH-HHHHh--------
Q 013518 240 QRAINAA----HVEAESIENGIGVVKLMGRYCGFIAMYATLG-----SRDVDCCLIPESPFYLEGE-ESLQS-------- 301 (441)
Q Consensus 240 ~~~i~~i----~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA-----~~~ad~iliPE~~~~l~~~-e~l~~-------- 301 (441)
+++|+++ ++++.|| ||||||||||+|||||+++||| + +||+|||||.||+++.+ +.++.
T Consensus 163 ~~ai~~l~~D~~~ta~s~--Rv~iVEvMGR~aG~LAl~a~lA~~~~~~-gad~iliPE~~~~~~~~~~~i~~~~~~~~~~ 239 (416)
T PRK14072 163 ATSVLEAALDVAAMANTS--KVFILEVMGRHAGWLAAAAALAKQNPDD-APHLIYLPERPFDEEKFLADVRAIVKRYGYC 239 (416)
T ss_pred HHHHHHHHHHHHhcccCc--eEEEEEEeCcchhHHHHHHhhccccCCC-CccEEEccCCCCCHHHHHHHHHHHHHhCCCe
Confidence 9999999 5555553 8999999999999999999999 7 79999999999999987 11110
Q ss_pred ---h----------------hhhhccCCcchhhhHHHHHHHHHHHhccccceeeeeeeeCCCceeccCC--CCcchHHHH
Q 013518 302 ---M----------------NQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIP--SNASDNVYC 360 (441)
Q Consensus 302 ---~----------------~~~d~~G~~~l~~i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~--p~a~Dr~~a 360 (441)
+ ..+|++||+++.+++++|+++|+++++ +++|+.+|||+|||++ ||++||++|
T Consensus 240 ivvVaEG~~~~~g~~i~e~~~~~D~~gh~~l~g~~~~La~~i~~~~g------~~~R~~~LG~~QRgg~~~ps~~Dr~~a 313 (416)
T PRK14072 240 VVVVSEGIRDADGKFIAEAGLAEDAFGHAQLGGVAPVLANLIKEKLG------KKVHWAVLDYLQRAARHIASKTDVEEA 313 (416)
T ss_pred EEEEecCcccccccchhccccccCCCCCcccccHHHHHHHHHHHHhC------CeEEEEeCChhhhCCCCCCCHHHHHHH
Confidence 0 113889999999999999999999886 3468899999999999 999999999
Q ss_pred HHHHHHHHHHHHcCCCceEEEEECC-------eEEeechhhhhhcCCccCc
Q 013518 361 TLLAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPFNRINERQNQVVI 404 (441)
Q Consensus 361 ~~lG~~AV~~~~~G~tg~mVg~~~~-------~~~~vPl~~v~~~~k~v~~ 404 (441)
++||..||+++++|+||+||+++++ ++..+||+++++++|++++
T Consensus 314 ~~lG~~AV~~~~~G~~g~mv~l~~~~~~~y~~~~~~vpl~~v~~~~k~v~~ 364 (416)
T PRK14072 314 YAVGKAAVEYALAGKNGVMPAIRRTSDDPYKWKIGLVPLSKVANKEKKMPP 364 (416)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEcCCCCcceeEEEcccHHHHHhhcCcCCH
Confidence 9999999999999999999999998 8999999999987677663
No 11
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00 E-value=1.2e-79 Score=623.13 Aligned_cols=309 Identities=28% Similarity=0.429 Sum_probs=276.0
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCC----
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~---- 167 (441)
+||||+||||||||||++||++++++.+ + +.+||||++||+||+++++++|+|+.+++|+++|||+|||+|++.
T Consensus 1 ~ri~Il~sGG~apG~N~~i~~~v~~~~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 78 (338)
T cd00363 1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA-E-GLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRTE 78 (338)
T ss_pred CeEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeecccCCCCccCCH
Confidence 4899999999999999999999999864 4 479999999999999999999999999999999999999999753
Q ss_pred -CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHH
Q 013518 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (441)
Q Consensus 168 -~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i 246 (441)
++++++++|++++||+||+||||||+++|.+|++++++++.+++|||||||||||+++||+|||||||+++++++|+++
T Consensus 79 ~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~~~~~i~~l 158 (338)
T cd00363 79 EGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKTIVEAIDRI 158 (338)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCC---ChhhHHHHHhhhhhhccCCcc---hh------
Q 013518 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF---YLEGEESLQSMNQQDASGNKL---LQ------ 314 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~---~l~~~e~l~~~~~~d~~G~~~---l~------ 314 (441)
++||.| ++||||||+|||+|||||+++|||+ +||+|||||.|| +++.+ +....++-..|+.. +.
T Consensus 159 ~~~a~s-~~rv~ivEvMGR~~G~Lal~~ala~-~ad~iliPE~~~~~~~~~~~--~~~i~~r~~~~~~~~vivvsEG~~~ 234 (338)
T cd00363 159 RDTASS-HQRTFVVEVMGRHCGDIALEAGLAT-GADIIFIPEEPAADEWEEEM--VDVIKKRRERGKRHGIVIVAEGAID 234 (338)
T ss_pred HHhccc-CCCEEEEEECCcCHHHHHHHHHHHh-CCCEEEeCCCCCCCCCHHHH--HHHHHHHHHhcCCeEEEEEeCCCcc
Confidence 999999 5689999999999999999999999 799999999999 66555 11111111111111 11
Q ss_pred -----hhHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECC---e
Q 013518 315 -----DVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG---R 386 (441)
Q Consensus 315 -----~i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~---~ 386 (441)
....+|+++|+++++ +++|+..|||+|||++|+++||++|++||..||+++++|+||+|++++++ +
T Consensus 235 ~~~~~~~~~~l~~~i~~~~~------~~~r~~~lGy~qRg~~ps~~D~~~a~~lG~~Av~~~~~g~tg~mv~~~~~~~~~ 308 (338)
T cd00363 235 FIPKPITEKLLAKLVEERLG------FDTRATVLGHVQRGGTPTAFDRILASRLGAEAVELLLEGTGGTPVGIQNLNENQ 308 (338)
T ss_pred ccccCchHHHHHHHHHHHcC------CceEEeecCccccCCCCChhhHHHHHHHHHHHHHHHHcCCCCcEEEEECCccCE
Confidence 125688999988875 34678889999999999999999999999999999999999999999999 9
Q ss_pred EEeechhhhhhcCCc--cCcCHHHHHHH
Q 013518 387 HAYIPFNRINERQNQ--VVITDRMWARV 412 (441)
Q Consensus 387 ~~~vPl~~v~~~~k~--v~~~~~~~~~~ 412 (441)
+.++||+++.+.+|+ +|+++.+|+.+
T Consensus 309 ~~~vpl~~~~~~~~~~~~~~~~~~~~~~ 336 (338)
T cd00363 309 VVRHPLTEAVNMTKRVGVDLEGRPFKKF 336 (338)
T ss_pred EEEecHHHHHhhhcccccCCChHHHHHh
Confidence 999999999999998 68889888754
No 12
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=100.00 E-value=8.1e-80 Score=614.25 Aligned_cols=286 Identities=31% Similarity=0.476 Sum_probs=255.1
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-----C
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-----H 167 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-----~ 167 (441)
||||+||||||||||++||++++++.+ + +.+|||+++||+||+++++++|+|+++++|+++|||+|||||++ +
T Consensus 1 rIaIltsGG~apG~Na~i~~vv~~a~~-~-g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~ 78 (301)
T TIGR02482 1 KIGILTSGGDAPGMNAAIRAVVRTAIY-H-GFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEE 78 (301)
T ss_pred CEEEEccCCCcHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHH
Confidence 799999999999999999999998864 4 46999999999999999999999999999999999999999984 2
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHHH
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAH 247 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i~ 247 (441)
++++++++|++++||+||+|||||||++|++|+++ +.++|||||||||||+++||+|||||||+++++++|++++
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~-----~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~ 153 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEE-----GGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIR 153 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHh-----hCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999885 3588999999999999999999999999999999999999
Q ss_pred HhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhhhhhhccCCc---chhh------hH
Q 013518 248 VEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSMNQQDASGNK---LLQD------VG 317 (441)
Q Consensus 248 ~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~~~~d~~G~~---~l~~------i~ 317 (441)
++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++++ +.++ ++.+.|+. .+.. .+
T Consensus 154 ~ta~s~-~rv~ivEvMGR~~G~lAl~~~la~-gad~iliPE~~~~~~~l~~~i~---~r~~~g~~~~iIvvaEG~~~~~~ 228 (301)
T TIGR02482 154 DTATSH-ERAFVIEVMGRHAGDLALYSGIAT-GAEIIIIPEFDYDIDELIQRLK---EQHEAGKKHSIIIVAEGNIVGSA 228 (301)
T ss_pred HHhhcC-CCEEEEEeCCCCHHHHHHHHHHHc-CCCEEEECCCCCCHHHHHHHHH---HHHHcCCCeEEEEEeCCCcCCcH
Confidence 999996 579999999999999999999999 79999999999999988 3332 22222222 1111 24
Q ss_pred HHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCeEEeechhhhh
Q 013518 318 LWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRIN 396 (441)
Q Consensus 318 ~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~~~~~vPl~~v~ 396 (441)
..|+++|+++++ +++|+..|||+|||++|+++||++|++||.+||+++++|++++||++++++++++||+++.
T Consensus 229 ~~l~~~l~~~~g------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~mv~~~~~~~~~~p~~~~~ 301 (301)
T TIGR02482 229 KEVAKKIEEATG------IETRVTVLGHTQRGGSPTAFDRVLASRLGAKAVELLLEGKGGVMIGIQNNKIVTHPIEEAL 301 (301)
T ss_pred HHHHHHHHHhcC------CeeEEeecChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCEEEEeeHHHhC
Confidence 567888877654 3467888999999999999999999999999999999999999999999999999999863
No 13
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=100.00 E-value=1.1e-79 Score=619.49 Aligned_cols=289 Identities=35% Similarity=0.550 Sum_probs=264.9
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeC-ChhhhhccccccccccccccCCC----
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINL-TPKVVNDIHKRGGTILGTSRGGH---- 167 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L-~~~~v~~~~~~GGs~LGssR~~~---- 167 (441)
|||||||||||||||++||++++++.+.+ +.+||||++||+||+++++++| +|+++++|.++|||+|||+|++.
T Consensus 1 ~IgIltsGG~apGmN~~i~~~v~~a~~~~-g~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt~LgtsR~~~~~~~ 79 (324)
T TIGR02483 1 RIGVLTGGGDCPGLNAVIRGVVRRAIAEY-GWEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGTILGSSRTNPFKYE 79 (324)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHcC-CceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCccccCCCCCccccC
Confidence 69999999999999999999999886433 4599999999999999999999 99999999999999999999842
Q ss_pred --CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHH
Q 013518 168 --DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 245 (441)
Q Consensus 168 --~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~ 245 (441)
++++++++|++++||+||+|||||||++|++|++ .+ ++|||||||||||+++||+|||||||++++++++++
T Consensus 80 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~----~g--i~vigiPkTIDNDl~gtd~tiGfdTA~~~~~~~i~~ 153 (324)
T TIGR02483 80 EDGDDKIVANLKELGLDALIAIGGDGTLGIARRLAD----KG--LPVVGVPKTIDNDLEATDYTFGFDTAVEIATEALDR 153 (324)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHh----cC--CCEEeeccccCCCCcCCccCcCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999986 24 789999999999999999999999999999999999
Q ss_pred HHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHh-----------------------
Q 013518 246 AHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQS----------------------- 301 (441)
Q Consensus 246 i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~----------------------- 301 (441)
+++||.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++++ +.+++
T Consensus 154 i~~ta~S~-~r~~ivEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~~l~~~v~~~~~~g~~~~vvvvsEG~~~~~~~ 231 (324)
T TIGR02483 154 LHTTAESH-HRVMVVEVMGRHAGWIALHSGIAG-GADVILIPEIPFDIDSVCEKVRERFARGKRFAIVVVAEGAKPKGGE 231 (324)
T ss_pred HHHHHhhc-CCEEEEEEcCCChhHHHHHHHhcc-CCCEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEEecCccccccc
Confidence 99999996 579999999999999999999999 89999999999999987 11110
Q ss_pred ----hhhhhccCCcchhhhHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCc
Q 013518 302 ----MNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTG 377 (441)
Q Consensus 302 ----~~~~d~~G~~~l~~i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg 377 (441)
...+|++||+++.+++++|+++|+++++. ++|...|||+|||++|+++||.+|++||.+||+++++|++|
T Consensus 232 ~~~~~~~~d~~gh~~~~~~~~~l~~~i~~~~g~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~ 305 (324)
T TIGR02483 232 MVVQEGVKDAFGHVRLGGIGNWLAEEIERRTGI------ETRATVLGHLQRGGSPSAFDRVLATRFGVAAVDLVHEGQFG 305 (324)
T ss_pred hhccccccccccCcccCcHHHHHHHHHHHhcCC------cceECCcChhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 01258899999999999999999998763 46788899999999999999999999999999999999999
Q ss_pred eEEEEECCeEEeechhhhh
Q 013518 378 FTVGPVNGRHAYIPFNRIN 396 (441)
Q Consensus 378 ~mVg~~~~~~~~vPl~~v~ 396 (441)
+||++++++++++||++++
T Consensus 306 ~mv~~~~~~~~~~p~~~~~ 324 (324)
T TIGR02483 306 HMVALRGTDIVYVPIAEAV 324 (324)
T ss_pred eEEEEECCEEEEeeHHHhC
Confidence 9999999999999999863
No 14
>PRK03202 6-phosphofructokinase; Provisional
Probab=100.00 E-value=2.2e-78 Score=608.76 Aligned_cols=295 Identities=29% Similarity=0.442 Sum_probs=262.4
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCC----
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~---- 167 (441)
+||||+||||||||||++|+++++++.. . +.+||||++||+||+++++++|+|+++++|.++|||+|||+|+..
T Consensus 2 k~i~Il~sGG~apG~Na~i~~~~~~~~~-~-g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~ 79 (320)
T PRK03202 2 KRIGVLTSGGDAPGMNAAIRAVVRTAIS-E-GLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDE 79 (320)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHHH-C-CCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCCH
Confidence 4899999999999999999999998864 3 569999999999999999999999999999999999999999742
Q ss_pred -CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHH
Q 013518 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (441)
Q Consensus 168 -~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i 246 (441)
++++++++|++++||+||+|||||||++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~------~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~~~~~i~~l 153 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEH------GIPVIGLPGTIDNDIAGTDYTIGFDTALNTAVEAIDRL 153 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhc------CCcEEEecccccCCCCCCccCcCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999863 57899999999999999999999999999999999999
Q ss_pred HHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhHHHHHhhhhhhccCCcc---hhhh----HHH
Q 013518 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEESLQSMNQQDASGNKL---LQDV----GLW 319 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~e~l~~~~~~d~~G~~~---l~~i----~~~ 319 (441)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++++ ++...++-+.|+.. +..+ ...
T Consensus 154 ~~~a~s~-~rv~iVEvMGR~~G~LAl~~ala~-~a~~iliPE~~~~~~~l--~~~i~~r~~~g~~~~vivvsEg~~~~~~ 229 (320)
T PRK03202 154 RDTASSH-ERVFIVEVMGRHAGDLALHAGIAG-GAEVILIPEVPFDIEEL--CAKIKKGRERGKKHAIIVVAEGVMPAEE 229 (320)
T ss_pred HHHHhcc-CCEEEEEECCCChHHHHHHHHHhc-CCCEEEeCCCCCCHHHH--HHHHHHHHHhcCCcEEEEEeCCCCCHHH
Confidence 9999996 579999999999999999999999 89999999999999988 22222222223221 1111 345
Q ss_pred HHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCeEEeechhhhh-hc
Q 013518 320 ISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRIN-ER 398 (441)
Q Consensus 320 l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~~~~~vPl~~v~-~~ 398 (441)
|++.|+++++ +++|+.+|||+|||++|+++||++|++||.+||+++++|++|+||+++++++.++||+++. ++
T Consensus 230 l~~~i~~~~~------~~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~~~~v~~~~~~~~~vpl~~v~~~~ 303 (320)
T PRK03202 230 LAKEIEERTG------LETRVTVLGHIQRGGSPTAFDRVLASRMGAHAVELLLEGKGGRMVGIQNNKIVHVPIEEAVENM 303 (320)
T ss_pred HHHHHHHHhC------CceEEcccchhhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCEEEEEeHHHHHhcC
Confidence 8888887775 3468999999999999999999999999999999999999999999999999999999999 66
Q ss_pred CCccCc
Q 013518 399 QNQVVI 404 (441)
Q Consensus 399 ~k~v~~ 404 (441)
+|++++
T Consensus 304 ~~~~~~ 309 (320)
T PRK03202 304 KHPFDK 309 (320)
T ss_pred CCCCCH
Confidence 666665
No 15
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-76 Score=597.54 Aligned_cols=297 Identities=33% Similarity=0.477 Sum_probs=257.8
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCC---
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH--- 167 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~--- 167 (441)
.+||||+|||||||||||+||++|+++.. + +.+||||++||+||+++++++|++++++.|+++|||+|||+|+++
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~-~-g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~ 79 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIK-E-GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKT 79 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHH-c-CCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCccc
Confidence 46999999999999999999999999874 3 689999999999999999999999999999999999999999853
Q ss_pred --CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHH
Q 013518 168 --DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 245 (441)
Q Consensus 168 --~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~ 245 (441)
.+++++++|++++||+|++||||||+++|+.|+++. .++|||||||||||+++||+|||||||++++++++++
T Consensus 80 ~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~-----~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~ 154 (347)
T COG0205 80 EEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG-----GIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDN 154 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhc-----CCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999864 3789999999999999999999999999999999999
Q ss_pred HHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCCh--hhHHHHHhhhh-hhccCCcc---hh-----
Q 013518 246 AHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYL--EGEESLQSMNQ-QDASGNKL---LQ----- 314 (441)
Q Consensus 246 i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l--~~~e~l~~~~~-~d~~G~~~---l~----- 314 (441)
++++++|| +|+||||||||+|||||++||||+ +||+|+|||.+|++ +++ +..... +...|+.. +.
T Consensus 155 l~dtassh-~r~~iveVMGR~aG~lAl~aglA~-~a~~ilipE~~~~~~i~~~--~~~i~~~~~~~gk~~~iIvvaEG~~ 230 (347)
T COG0205 155 LRDTASSH-ERIFIVEVMGRHAGWLALAAGLAT-GADIILIPEEPADLIIEEL--IAEIKAKREARGKKHAIIVVAEGAI 230 (347)
T ss_pred HHHHHhCc-CCEEEEEecCcChhHHHHHHHHhc-CCCEEEecCccccchHHHH--HHHHHHHHHHhCCCceEEEEccccc
Confidence 99888775 689999999999999999999999 79999999999987 655 221111 11123221 10
Q ss_pred h----hHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCeEEee
Q 013518 315 D----VGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYI 390 (441)
Q Consensus 315 ~----i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~~~~~v 390 (441)
. .+..+...+.+++... ..++|...|||+|||+.|+++||+||++||.+||+++++|+++.||+++|+++++.
T Consensus 231 ~~~~~~~~~~~~~i~~~~~~~---~~~~r~t~LGhiqRgg~p~~fDr~~a~~lG~~AV~~l~~g~~~~~v~i~~~~~v~~ 307 (347)
T COG0205 231 DQIGENGAELLAAIEELLALG---DFETRVTVLGHIQRGGTPSAFDRVLASRLGAAAVDLLLEGKTGYMVGIRNNKIVHV 307 (347)
T ss_pred cccccchhhHHHHHHHHhhhc---ccceEEEeccccccCCCCchHHHHHHHHHHHHHHHHHHcCCCCceEEEeCCeeEee
Confidence 1 1445556666665422 14578889999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhcCCc
Q 013518 391 PFNRINERQNQ 401 (441)
Q Consensus 391 Pl~~v~~~~k~ 401 (441)
|+++.....+.
T Consensus 308 ~~~~~~~~~~~ 318 (347)
T COG0205 308 PIDEAVAPLKM 318 (347)
T ss_pred hhHhhhhhhhh
Confidence 99988876554
No 16
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=100.00 E-value=6.5e-75 Score=633.65 Aligned_cols=326 Identities=22% Similarity=0.341 Sum_probs=277.1
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CeeeCChhhhhccccccccccccccCCC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGGH 167 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (441)
+++||||+||||||||||++||++|+.+. +.+.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|++.
T Consensus 2 ~~k~IaIltSGGdapGmNaaIravvr~a~--~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LGTsR~~~ 79 (762)
T cd00764 2 AGKAIAVLTSGGDAQGMNAAVRAVVRMGI--YVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIGSARCKE 79 (762)
T ss_pred CCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCcccCCCCCc
Confidence 45799999999999999999999999885 3467999999999999998 7999999999999999999999999853
Q ss_pred -----CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHH-----------------HHHHHcCCCceEEEeeccccCCCCC
Q 013518 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY-----------------EEIRQRGLKVAVAGIPKTIDNDIPV 225 (441)
Q Consensus 168 -----~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~-----------------~~~~~~~~~i~vvgIPkTIDNDi~~ 225 (441)
++.+++++|++++||+||+||||||+++|+.|. ++..+++..++|||||||||||+++
T Consensus 80 f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~g 159 (762)
T cd00764 80 FREREGRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCG 159 (762)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCC
Confidence 468999999999999999999999999999764 2334445678999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCC---hhhH-HHHHh
Q 013518 226 IDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFY---LEGE-ESLQS 301 (441)
Q Consensus 226 td~s~GfdTA~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~---l~~~-e~l~~ 301 (441)
||+|||||||+++++++||++++||.|| +|+||||||||+|||||+++|||+ +||+|||||.||+ ++++ +.++
T Consensus 160 TD~TiGfdTAl~~i~eaId~i~~tA~Sh-~R~fVVEvMGR~~G~LAl~aglA~-gAd~ilIPE~p~~~~~~~~i~~~l~- 236 (762)
T cd00764 160 TDMTIGTDSALHRICEVVDAITTTAQSH-QRTFVLEVMGRHCGYLALVSGLAT-GADWIFIPERPPEDGWEDQMCRRLS- 236 (762)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHhc-CCEEEEEECCCCchHHHHHHHhcc-CCCEEEecCCCCchhHHHHHHHHHH-
Confidence 9999999999999999999999999997 479999999999999999999999 7999999999999 3333 1222
Q ss_pred hhhhhccCCcc---hh----------hh-HHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHH
Q 013518 302 MNQQDASGNKL---LQ----------DV-GLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSA 367 (441)
Q Consensus 302 ~~~~d~~G~~~---l~----------~i-~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~A 367 (441)
++...|+.. +. .+ +..|++.|+++++. .+|..+|||+|||+.|+++||++|++||.+|
T Consensus 237 --~~~~~gk~~~iIVVaEGa~d~~g~~i~~~~l~~~l~~~~g~------d~R~t~LGh~QRGG~Psa~Dr~la~~~G~~A 308 (762)
T cd00764 237 --EHRSRGKRLNIIIVAEGAIDDQLKPITSEDVKDLVVERLGL------DTRVTTLGHVQRGGTPSAFDRILASLMGVEA 308 (762)
T ss_pred --HHHhcCCCcEEEEEeCCCccccCCCccHHHHHHHHHHhcCC------CeeEeecChhhcCCCCCHHHHHHHHHHHHHH
Confidence 122222211 10 01 35688888777653 3677889999999999999999999999999
Q ss_pred HHHHHcCCC---ceEEEEECCeEEeechhhhhhcCCccC--cCHHHHHHHHHhcCCCCCCChHHHHH
Q 013518 368 VHGAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVV--ITDRMWARVLSSTNQPSFLSANELAK 429 (441)
Q Consensus 368 V~~~~~G~t---g~mVg~~~~~~~~vPl~~v~~~~k~v~--~~~~~~~~~l~~t~qp~~~~~~~~~~ 429 (441)
|+++++|++ ++||++++|+++++||+++...+|.|. .+..+|.+.++. +.++|..+-+.++
T Consensus 309 V~~l~~g~~~~~~~~i~~~~~~i~~~pl~e~v~~~k~v~~~~~~~~~~~a~~l-r~~~f~~~~~~~~ 374 (762)
T cd00764 309 VMALLEATPDTPACVVSLNGNKAVRLPLMECVQLTKDVQKAMDEKRFDEAAAL-RGKSFDKNWNLYK 374 (762)
T ss_pred HHHHHcCCCCCCCEEEEEECCEEEEEEHHHHHhhccchhhhhhhhhHHHHHHh-cchhHHHHHHHHH
Confidence 999999987 899999999999999999999999885 356677777776 4567776554443
No 17
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=100.00 E-value=7e-75 Score=635.62 Aligned_cols=325 Identities=23% Similarity=0.330 Sum_probs=280.1
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CeeeCChhhhhccccccccccccccCCC--
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGGH-- 167 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGssR~~~-- 167 (441)
+||||+||||||||||++||++++++.+ .+.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|++.
T Consensus 1 krIaIltsGGdapGmNaaIravv~~a~~--~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~ 78 (745)
T TIGR02478 1 KRIGVLTSGGDAQGMNAAVRAVVRMAIY--VGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTIIGTARCKEFR 78 (745)
T ss_pred CEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCceecCCCCCccc
Confidence 4899999999999999999999998853 357999999999999999 9999999999999999999999999853
Q ss_pred ---CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHH-----------------HHHcCCCceEEEeeccccCCCCCCC
Q 013518 168 ---DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-----------------IRQRGLKVAVAGIPKTIDNDIPVID 227 (441)
Q Consensus 168 ---~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~-----------------~~~~~~~i~vvgIPkTIDNDi~~td 227 (441)
++++++++|++++||+||+||||||+++|+.|+++ ..+++..++|||||||||||+++||
T Consensus 79 ~~~~~~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd 158 (745)
T TIGR02478 79 ERPGRLKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTD 158 (745)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCc
Confidence 35799999999999999999999999999977753 3445667899999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCC---hhhH-HHHHhhh
Q 013518 228 KSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFY---LEGE-ESLQSMN 303 (441)
Q Consensus 228 ~s~GfdTA~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~---l~~~-e~l~~~~ 303 (441)
+|||||||+++++++||+++++|.|| +|+||||||||+|||||+++|||+ +||+|||||.||+ ++++ +.++...
T Consensus 159 ~TiGfdTA~~~i~~aid~i~~ta~Sh-~R~fvvEvMGR~~G~LAl~aalA~-gad~iliPE~~~~~~~~~~i~~~l~~~~ 236 (745)
T TIGR02478 159 MTIGADSALHRICEAIDAISSTAQSH-QRAFVVEVMGRHCGYLALMAAIAT-GADYVFIPERPPEEGWEDQLCHKLKRNR 236 (745)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcc-CCEEEEEEcCccccHHHHHHHhcc-CCCEEEecCCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999996 579999999999999999999999 8999999999999 4444 2222110
Q ss_pred --------------hhhccCCcchhhhHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHH
Q 013518 304 --------------QQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVH 369 (441)
Q Consensus 304 --------------~~d~~G~~~l~~i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~ 369 (441)
-.|++||... ..+|++.|+++++. .+|...|||+|||++|+++||++|++||.+||+
T Consensus 237 ~~gk~~~iIvvaEG~~d~~g~~i~---~~~l~~~l~~~~g~------~~R~~~LGh~QRgg~Psa~Dr~la~~~G~~Av~ 307 (745)
T TIGR02478 237 KAGKRKNIVIVAEGAIDRDLNPIT---SEDVKDVLVERLGL------DTRITVLGHVQRGGAPSAYDRILATRQGVEAVL 307 (745)
T ss_pred HcCCCcEEEEEeCCcccccCCccc---HHHHHHHHHHhcCC------ceEEeecChhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 0223333221 35688888777653 367788999999999999999999999999999
Q ss_pred HHHcCCC---ceEEEEECCeEEeechhhhhhcCCccCcC--HHHHHHHHHhcCCCCCCChHHHHHh
Q 013518 370 GAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVVIT--DRMWARVLSSTNQPSFLSANELAKF 430 (441)
Q Consensus 370 ~~~~G~t---g~mVg~~~~~~~~vPl~~v~~~~k~v~~~--~~~~~~~l~~t~qp~~~~~~~~~~~ 430 (441)
++++|++ ++||+++++++.++||+++.+.+|.++.+ ..+|...++. +.++|..+-+.+..
T Consensus 308 ~~~~g~~~~~~~mv~~~~~~~~~~pl~~~~~~~k~v~~~~~~~~~~~a~~~-r~~~f~~~~~~~~~ 372 (745)
T TIGR02478 308 AVLESTPETPSPVISLRGNKIVRKPLVEAVAQTKTVAKAIKEKRFAEAMRL-RGREFVENLATFLF 372 (745)
T ss_pred HHHcCCCCCCCEEEEEECCEEEEEeHHHHHhhcCCCCHHHHhccHHHHHHh-cCHHHHHHHHHHHh
Confidence 9999998 99999999999999999999999999864 5578888776 46688776555443
No 18
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=100.00 E-value=8.4e-72 Score=591.96 Aligned_cols=310 Identities=26% Similarity=0.383 Sum_probs=272.9
Q ss_pred CCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccc-ccccccCCC
Q 013518 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGGH 167 (441)
Q Consensus 89 ~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGssR~~~ 167 (441)
+..+||||++|||||||||++|+++++++...+++.+||||++||+||+++++++|+++.|+.|+++||+ +|||+|++.
T Consensus 65 ~~~~rIgIl~sGG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~ 144 (539)
T TIGR02477 65 HQPLKIGVILSGGQAPGGHNVISGLFDALKKLNPNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKI 144 (539)
T ss_pred ccceEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCC
Confidence 4558999999999999999999999998876667889999999999999999999999999999999996 999999853
Q ss_pred ----CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCC--CCCCCCChhhHHHHHHH
Q 013518 168 ----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--VIDKSFGFDTAVEEAQR 241 (441)
Q Consensus 168 ----~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--~td~s~GfdTA~~~~~~ 241 (441)
++++++++|++++||+||+||||||+++|..|++++.+++++|+|||||||||||++ +||+|||||||++++++
T Consensus 145 ~~~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~ 224 (539)
T TIGR02477 145 ETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSE 224 (539)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999998 59999999999999999
Q ss_pred HHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCC----ChhhH---------------------
Q 013518 242 AINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF----YLEGE--------------------- 296 (441)
Q Consensus 242 ~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~----~l~~~--------------------- 296 (441)
+|+++..++.|++++|||||+|||+|||||++||||+ +||+|||||+++ +++++
T Consensus 225 ~I~~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvI 303 (539)
T TIGR02477 225 LIGNICRDALSAKKYWHFIRLMGRSASHIALECALQT-HPNVCIIGEEVAAKKMTLSQLTDYIADVIVKRAAKGKNFGVI 303 (539)
T ss_pred HHHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 9999988888888899999999999999999999999 899999999987 65442
Q ss_pred -------HH-------H------------------------Hh-h----------------hhhhccCCcchhhh--HHH
Q 013518 297 -------ES-------L------------------------QS-M----------------NQQDASGNKLLQDV--GLW 319 (441)
Q Consensus 297 -------e~-------l------------------------~~-~----------------~~~d~~G~~~l~~i--~~~ 319 (441)
+. + .. . .++|.+||+++.++ +++
T Consensus 304 vvsEGlie~ipe~~~Li~el~~~l~~~~~~~~~~~~i~~~ls~~s~~l~~~lp~~i~~qLl~~~D~~G~~~ls~i~te~l 383 (539)
T TIGR02477 304 LIPEGLIEFIPEVQALIKELNNLLAQNVLEEGRKDNVQSKLSPSSKALFESLPEFIRHQLLLDRDPHGNVQVSQIETEKL 383 (539)
T ss_pred EEeCCchhhcchHHHHHHHHHhhhhcccccchhhhhhhhhcCHhHHHHHhhcchhHHHhhccCcCCCCCeeeccccHHHH
Confidence 10 0 00 0 13688999999887 788
Q ss_pred HHHHHHHHhccccc-eeeeeeee----CCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECC--e-----E
Q 013518 320 ISHKIKDHFARLHK-MAINLKYI----DPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG--R-----H 387 (441)
Q Consensus 320 l~~~I~~~~~~~~~-~~~~~r~i----~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~--~-----~ 387 (441)
|++.++++++.... ...+.|+. .+||.|||+.||.+|..||+.||..|++++++|+||.|++++|- . +
T Consensus 384 L~~lV~~~l~~~~~~~~~k~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~ 463 (539)
T TIGR02477 384 LIELVQTELNKRKKEGEYKGKFSAVSHFFGYEGRCAFPSNFDSDYCYALGYTAAILLANGLTGYMSTIKNLTNPAEEWIA 463 (539)
T ss_pred HHHHHHHHHHhhhccccceeEEeecccccCcccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeE
Confidence 88888887752211 11344555 57999999999999999999999999999999999999999982 2 3
Q ss_pred EeechhhhhhcC
Q 013518 388 AYIPFNRINERQ 399 (441)
Q Consensus 388 ~~vPl~~v~~~~ 399 (441)
..+|+..+.+.+
T Consensus 464 ~~vPl~~~~n~e 475 (539)
T TIGR02477 464 GGVPLTMMMNME 475 (539)
T ss_pred ecccHHHHhChh
Confidence 679999988743
No 19
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=5.3e-72 Score=594.66 Aligned_cols=362 Identities=25% Similarity=0.363 Sum_probs=296.6
Q ss_pred hhhhCCCCCCCcCCCCCC-cccccccccccccChhHHHHHHhccCC-----CCcccccccCCcccccccCCCeeEEEEcc
Q 013518 26 LTDYIPDLPTYPNPLQFN-AAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGPRQKVYFVSDEVHACIVTC 99 (441)
Q Consensus 26 l~~~~p~~p~~~~~l~~n-~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~r~~~~~~~~~~~iaIl~s 99 (441)
-+.+.|.+|++ |++. +.++ ......|+.+...-.+.+.| .+...|....+.. ...+||||++|
T Consensus 10 r~~~~p~lp~~---l~~~~~~~~---~~~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~~~-----~~~~~IgIl~s 78 (555)
T PRK07085 10 RLKYRPKLPKL---LQNDPGLIK---IVDGEFTESVADQDELAELFPNTYGLPYVTFVKGSESS-----SKPLKVGVILS 78 (555)
T ss_pred HHhCCCCCCHH---HhCCCCCce---EeecCCccccCCHHHHHHhChHhhCCccEEEEeCCCCc-----ccceEEEEECC
Confidence 34788999887 3221 1111 11223333333322223344 2456676653221 23579999999
Q ss_pred CCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccc-ccccccCC----CCHHHHHH
Q 013518 100 GGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG----HDTSKIVD 174 (441)
Q Consensus 100 GG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGssR~~----~~~~~i~~ 174 (441)
||||||||++|+++++++...+.+.+||||++||+||+++++++|+|+.+++|+++||+ +|||+|++ ++++++++
T Consensus 79 GG~aPG~N~vI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~i~~ 158 (555)
T PRK07085 79 GGQAPGGHNVIAGLFDGLKKLNPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACLE 158 (555)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHHHHHH
Confidence 99999999999999997766677889999999999999999999999999999999998 99999985 35899999
Q ss_pred HHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC--CCCCChhhHHHHHHHHHHHHHHhhhc
Q 013518 175 SIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDTAVEEAQRAINAAHVEAES 252 (441)
Q Consensus 175 ~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t--d~s~GfdTA~~~~~~~i~~i~~~a~s 252 (441)
+|++++||+||+||||||+++|..|++++++++++|+|||||||||||++++ |+|||||||+++++++|+++..+|.|
T Consensus 159 ~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~~I~~i~~Da~s 238 (555)
T PRK07085 159 TVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSEMIGNISRDALS 238 (555)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999989999999999999999955 99999999999999999999888888
Q ss_pred CCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCC----CCChhhH----------------------------H---
Q 013518 253 IENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPES----PFYLEGE----------------------------E--- 297 (441)
Q Consensus 253 ~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~----~~~l~~~----------------------------e--- 297 (441)
+++||||||+|||+|||||++||||+ +||+|||||+ +++++++ +
T Consensus 239 ~~~~~~~VevMGR~aG~LAl~~aLat-~~~iilIpE~~~~~~~~L~~i~~~i~~~i~~r~~~gk~~gvIvvsEGlie~ip 317 (555)
T PRK07085 239 AKKYWHFIKLMGRSASHIALECALQT-HPNICLISEEVAEKKMSLQDIVHYIASVIADRAAKGKNYGVILIPEGLIEFIP 317 (555)
T ss_pred cCCcEEEEEECCCChHHHHHHHHHhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchhcCc
Confidence 88899999999999999999999999 8999999999 6676553 1
Q ss_pred -------H---------------------------HHh-h----------------hhhhccCCcchhhh--HHHHHHHH
Q 013518 298 -------S---------------------------LQS-M----------------NQQDASGNKLLQDV--GLWISHKI 324 (441)
Q Consensus 298 -------~---------------------------l~~-~----------------~~~d~~G~~~l~~i--~~~l~~~I 324 (441)
+ +.. . .++|++||+++.++ ++.|++.|
T Consensus 318 e~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls~i~te~lL~~lV 397 (555)
T PRK07085 318 EMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLSPESAKLFKSLPEDIARQLLLDRDPHGNVQVSKIETEKLLIEMV 397 (555)
T ss_pred hHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcCHHHHHHHhhcchhhhhhhccCcCCCCCeeeccccHHHHHHHHH
Confidence 0 000 0 13689999999988 88899999
Q ss_pred HHHhccccc-----eeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECC--e-----EEeech
Q 013518 325 KDHFARLHK-----MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG--R-----HAYIPF 392 (441)
Q Consensus 325 ~~~~~~~~~-----~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~--~-----~~~vPl 392 (441)
+++++.... ..+..+...+||.|||+.|+.+|..||+.||..|++++++|+||.|++++|- . +..+|+
T Consensus 398 ~~~l~~~k~~g~y~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~~~~~G~tG~m~~i~~l~~~~~~w~~~~vPl 477 (555)
T PRK07085 398 KKELEKLKPEGKYKGPFSAISHFFGYEGRSAFPSNFDADYCYALGYTAALLILNGKTGYMSTIKNLTSPYTEWIAGAVPL 477 (555)
T ss_pred HHHHHHhhcccccccceeeeeecCChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCcceeeEecccH
Confidence 888764211 1245566779999999999999999999999999999999999999999982 2 367999
Q ss_pred hhhhhcC
Q 013518 393 NRINERQ 399 (441)
Q Consensus 393 ~~v~~~~ 399 (441)
..+.+.+
T Consensus 478 ~~~~n~e 484 (555)
T PRK07085 478 TMMMNME 484 (555)
T ss_pred HHHhcHH
Confidence 9988743
No 20
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=100.00 E-value=2.7e-71 Score=587.51 Aligned_cols=365 Identities=24% Similarity=0.314 Sum_probs=299.8
Q ss_pred hhhCCCCCCCcCCCCCC-cccccccccccccChhHHHHHHhccCC-----CCcccccccCCcccccccCCCeeEEEEccC
Q 013518 27 TDYIPDLPTYPNPLQFN-AAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGPRQKVYFVSDEVHACIVTCG 100 (441)
Q Consensus 27 ~~~~p~~p~~~~~l~~n-~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~r~~~~~~~~~~~iaIl~sG 100 (441)
..+.|.+|++ |++. ..++ ....+.|..+...-.+.+.| .+...|....... -.+..+||||++||
T Consensus 11 ~~~~p~lp~~---l~~~~~~~~---~~~~~~~~~~~~~~~~~~~fp~~~~~p~~~~~~~~~~~---~~~~~~~IgIl~SG 81 (550)
T cd00765 11 INYTPKLPSV---LKGDFNNIK---IVEGPATSAAGDPDALAKLFPGTYGQPSVAFVPDQDAP---SSAPKLKIGIVLSG 81 (550)
T ss_pred HhcCCCCChh---hcCCccceE---EeecCcccccCCHHHHHHhChhhhCCcceEEeecCCcc---cCCCCCEEEEECCC
Confidence 3689999988 4331 0111 22233344433322223444 3556677643211 12556899999999
Q ss_pred CCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccc-ccccccCC----CCHHHHHHH
Q 013518 101 GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG----HDTSKIVDS 175 (441)
Q Consensus 101 G~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGssR~~----~~~~~i~~~ 175 (441)
|||||||++|+++++++...+.+.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++ +++++++++
T Consensus 82 G~aPGiNnvI~gv~~~~~~~~~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~e~~~~i~~~ 161 (550)
T cd00765 82 GQAPGGHNVISGLFDYLKERAKGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAEET 161 (550)
T ss_pred CCcHhHHHHHHHHHHHHHHhcCCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCHHHHHHHHHH
Confidence 9999999999999998876666789999999999999999999999999999999999 99999985 358899999
Q ss_pred HHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC--CCCCChhhHHHHHHHHHHHHHHhhhcC
Q 013518 176 IQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDTAVEEAQRAINAAHVEAESI 253 (441)
Q Consensus 176 l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t--d~s~GfdTA~~~~~~~i~~i~~~a~s~ 253 (441)
|++++||+||+||||||+++|..|++++++++++++|||||||||||+++| |+|||||||+++++++|++++.++.|+
T Consensus 162 l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~I~ni~~Da~s~ 241 (550)
T cd00765 162 AKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSELIGNVMRDARST 241 (550)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999985 999999999999999999999999998
Q ss_pred CceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCC----ChhhH----------------------------H----
Q 013518 254 ENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF----YLEGE----------------------------E---- 297 (441)
Q Consensus 254 ~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~----~l~~~----------------------------e---- 297 (441)
++|++|||+|||+|||||++||||+ +||+|||||++| +++++ +
T Consensus 242 ~~~~~~VEvMGR~aG~LAl~~aLat-~p~lilIpE~~~~~~~~L~~v~~~I~~~i~~r~~~gk~~gvIvVsEGlie~ipe 320 (550)
T cd00765 242 GKYWHFVKLMGRSASHIALECALKT-HPNICIISEEVSAQKQTLKNITDYMVDVICKRAELGYNFGVVLVPEGLIEFIPE 320 (550)
T ss_pred CCcEEEEEeCCCchHHHHHHHHHhc-CCCEEEecCcccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCch
Confidence 8899999999999999999999999 899999999999 54333 1
Q ss_pred ------HHH-----------------------------h----------------hhhhhccCCcchhhh--HHHHHHHH
Q 013518 298 ------SLQ-----------------------------S----------------MNQQDASGNKLLQDV--GLWISHKI 324 (441)
Q Consensus 298 ------~l~-----------------------------~----------------~~~~d~~G~~~l~~i--~~~l~~~I 324 (441)
++. . ..++|.+||+++..+ ++.|++.+
T Consensus 321 ~~~Li~el~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~g~~f~~lp~~i~~ql~~~~D~~G~~qls~iete~lL~~lV 400 (550)
T cd00765 321 VKELIAELNEILANEVVEFNGLWKKKLTEQSLKLFDLLPKGVYLPLFIEAIQEQLMLERDPHGNVQVSRIETEKLLIQMV 400 (550)
T ss_pred HHHHHHHHHHHhhhcccchhhhhhhcccHHHHHhhhccccccccccchHHHHHHhhcccCCCCCEeeccchHHHHHHHHH
Confidence 011 0 113688999999888 88999999
Q ss_pred HHHhccc-cc----eeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECC-------eEEeech
Q 013518 325 KDHFARL-HK----MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPF 392 (441)
Q Consensus 325 ~~~~~~~-~~----~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~-------~~~~vPl 392 (441)
+++++.. .+ -.+......+||.|||+.||.+|..||+.||..|++++.+|+||.|++++|- ++..+||
T Consensus 401 ~~~L~~~k~~g~y~~~f~~~~h~~Gye~Rca~PS~fD~~yay~LG~~A~~~~~~g~tGyM~~I~~l~~~~~~w~~~~vPl 480 (550)
T cd00765 401 ETRLEKMKQAGAYKGQFMGQSHFFGYEGRCAFPSNFDADYCYALGYGAGVLLNSGKTGYISSVGNLAAPVEEWTVGGVPL 480 (550)
T ss_pred HHHHHHhhhcccccccccceeeecCcchhccCCcHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEecccH
Confidence 9888642 11 1133445668999999999999999999999999999999999999999972 2466999
Q ss_pred hhhhhcCCc
Q 013518 393 NRINERQNQ 401 (441)
Q Consensus 393 ~~v~~~~k~ 401 (441)
..+++.+|+
T Consensus 481 ~~~mn~e~~ 489 (550)
T cd00765 481 TMLMNMERR 489 (550)
T ss_pred HHHhccccc
Confidence 999885543
No 21
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=100.00 E-value=8.9e-72 Score=552.90 Aligned_cols=264 Identities=35% Similarity=0.546 Sum_probs=224.2
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCC----
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~---- 167 (441)
+||||+||||||||||++|+++++++.+ .+.+||||++||+||+++++++|+|+++++|.++|||+|||+|++.
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~--~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~ 78 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIR--RGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKDP 78 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHH--TTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGSH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHh--cCCEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccch
Confidence 5999999999999999999999998853 4579999999999999999999999999999999999999999852
Q ss_pred -CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHH
Q 013518 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (441)
Q Consensus 168 -~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i 246 (441)
++.+++++|++++||+||+|||||||++|++|++++. ++||+||||||||+++||+|||||||+++++++++++
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~-----i~vigiPkTIDNDi~gtd~siGf~TA~~~~~~~i~~i 153 (282)
T PF00365_consen 79 EGRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFG-----IPVIGIPKTIDNDIPGTDYSIGFDTAVNYIAEAIDNI 153 (282)
T ss_dssp HHHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHH-----SEEEEEEEETTSSCTTSSS-BTHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCc-----eEEEEEeccccCCcCCCCCCcccCchhHHHHHHHHHH
Confidence 3568999999999999999999999999999997653 7899999999999999999999999999999999999
Q ss_pred HHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhhhhhhccCCc---ch--------h
Q 013518 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSMNQQDASGNK---LL--------Q 314 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~~~~d~~G~~---~l--------~ 314 (441)
+++|.|+ +||||||+|||+|||||+++|||+ +||+|||||.||+++.+ +.++.. ...|+. .+ .
T Consensus 154 ~~~a~s~-~rv~ivEvmGr~~G~LAl~~ala~-~a~~ilipE~~~~~~~~~~~i~~~---~~~~k~~~iVvvsEG~~~~~ 228 (282)
T PF00365_consen 154 KTTARSH-NRVFIVEVMGRNAGWLALAAALAT-GADLILIPEEPFDLDELLDDIKKR---YERGKRYGIVVVSEGAKDGQ 228 (282)
T ss_dssp HHHHHHS-TEEEEEEESSTTSTHHHHHHHHHH-TSSEEEBTTSHHHHHHHHHHHHHH---HHTTSSEEEEEEETTSBSSH
T ss_pred HHhhccc-CCceEEEeCCCCcCHHHHHHHhcc-CCCEEEEeccccchHHHHHHhhhh---hcccCceEEEEecccccccc
Confidence 9999986 689999999999999999999999 79999999999999887 333322 112211 11 1
Q ss_pred hhH-HHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHc
Q 013518 315 DVG-LWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVA 373 (441)
Q Consensus 315 ~i~-~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~ 373 (441)
.+. +.+.+..++.++ +.+|+..|||+|||+.|+++||++|++||.+||+++++
T Consensus 229 ~i~~~~~~~~~~~~~~------~~~r~~~lGh~Qrgg~P~~~DR~la~~~g~~Av~~i~e 282 (282)
T PF00365_consen 229 PISSEFIKELLEEGLG------FDVRVTILGHLQRGGTPSAFDRILATRFGIKAVEAILE 282 (282)
T ss_dssp BHHHHHHHHHHHHTTT------SEEEEEE-GGGGGTSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccc------cceeecccchhhcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 122 233333333222 46789999999999999999999999999999999875
No 22
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=100.00 E-value=4.8e-70 Score=579.12 Aligned_cols=362 Identities=22% Similarity=0.276 Sum_probs=294.2
Q ss_pred hhhCCCCCCCcCCCCCCcccccccccccccChhHHHHHHhccCC-----CCcccccccCCcccccccCCCeeEEEEccCC
Q 013518 27 TDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGPRQKVYFVSDEVHACIVTCGG 101 (441)
Q Consensus 27 ~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~r~~~~~~~~~~~iaIl~sGG 101 (441)
+.+.|.+|++ |++ .++.. ..+.|..+...-.+.+.| .+...|.+... .....+..+|||||+|||
T Consensus 37 ~~~~p~lp~~---l~~--~~~~~---~~~~~~~~~~~~~i~~~fp~~~~~~~~~~~~~~~--~~~~~~~~~~IGIv~sGG 106 (568)
T PLN02251 37 IDHALPLPSV---LKG--PFKIV---DGPPSSAAGNPEEIAKLFPNLFGQPSVMLVPSQA--DALSSDQKLKIGVVLSGG 106 (568)
T ss_pred HhCCCCCChh---hcC--ceEEE---ecCcccccCCHHHHHHhChHhhCCceEEEeeccC--ccccccccceEEEECcCC
Confidence 3678899887 433 11111 222233332222223334 34556665320 011113457999999999
Q ss_pred CCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccc-ccccccCC----CCHHHHHHHH
Q 013518 102 LCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG----HDTSKIVDSI 176 (441)
Q Consensus 102 ~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGssR~~----~~~~~i~~~l 176 (441)
||||||+||+++++++.....+.+||||++||+||+++++++|+++.++.|+++||+ +|||+|++ +++++++++|
T Consensus 107 ~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~~~~~~l 186 (568)
T PLN02251 107 QAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETA 186 (568)
T ss_pred CchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHHHHHHHH
Confidence 999999999999999876566789999999999999999999999999999999999 99999985 3589999999
Q ss_pred HHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCC--CCCChhhHHHHHHHHHHHHHHhhhcCC
Q 013518 177 QDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID--KSFGFDTAVEEAQRAINAAHVEAESIE 254 (441)
Q Consensus 177 ~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td--~s~GfdTA~~~~~~~i~~i~~~a~s~~ 254 (441)
++++||+||+||||||+++|..|++++++++.+|+|||||||||||+++|| +|||||||+++++++|++++.||.|++
T Consensus 187 ~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~~I~ni~~da~S~~ 266 (568)
T PLN02251 187 TKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSEMIGNVMIDARSTG 266 (568)
T ss_pred HHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999 699999999999999999999999998
Q ss_pred ceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCC----CCChhhH------------------------HHH-------
Q 013518 255 NGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPES----PFYLEGE------------------------ESL------- 299 (441)
Q Consensus 255 ~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~----~~~l~~~------------------------e~l------- 299 (441)
++++|||+|||+|||||++||||+ +||+|||||+ +.+++++ |.+
T Consensus 267 k~~~~VevMGR~aG~LAL~~aLat-~pniilIpEe~~~~~~~L~~I~~~I~~~I~~R~~~gk~~gvIlVsEGlie~ipe~ 345 (568)
T PLN02251 267 KYYHFVRLMGRAASHITLECALQT-HPNITIIGEEVAAKKLTLKNVTDYIVDVICKRAELGYNYGVILIPEGLIDFIPEV 345 (568)
T ss_pred CEEEEEEeCCCchHHHHHHHHHhh-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCchhhCchH
Confidence 888999999999999999999999 8999999999 4556333 100
Q ss_pred ----Hh---------------------------------------hhhhhccCCcchhh--hHHHHHHHHHHHhccccc-
Q 013518 300 ----QS---------------------------------------MNQQDASGNKLLQD--VGLWISHKIKDHFARLHK- 333 (441)
Q Consensus 300 ----~~---------------------------------------~~~~d~~G~~~l~~--i~~~l~~~I~~~~~~~~~- 333 (441)
++ ..++|++||+++.. .++.|++.++++++....
T Consensus 346 ~~li~el~~~l~~~~~~~~~~~~~~ls~~~~~lf~~lP~~i~~qll~~rD~~G~~qls~Iete~lL~~lV~~~L~~rk~~ 425 (568)
T PLN02251 346 QHLIAELNEILAHDVVDEEGHWKKKLKPQSLQLFDFLPHAIQEQLMLERDPHGNVQVAKIETEKMLIQMVETELEKRKQE 425 (568)
T ss_pred HHHHHHHHHHhhhcccccchhhhhhCCHHHHHHHHhCcHHHHHHhccccCCCCCeeecccHHHHHHHHHHHHHHhhhccc
Confidence 00 01368999999987 578899999888764211
Q ss_pred ----eeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------EEeechhhhhhcC
Q 013518 334 ----MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGR-------HAYIPFNRINERQ 399 (441)
Q Consensus 334 ----~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~~-------~~~vPl~~v~~~~ 399 (441)
..+..+...+||.|||+.||.+|..||+.||..|++++.+|+||.|++++|-. +.-+||..+.+.+
T Consensus 426 ~~~~~~f~~~~h~~GYe~Rca~PS~fD~~yay~LG~~A~~li~~G~tGyM~~I~nl~~~~~~w~~~~vpl~~~mn~e 502 (568)
T PLN02251 426 GSYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGYGAGALLHSGKTGLISSVGNLAAPVEEWTVGGTALTSLMDVE 502 (568)
T ss_pred cccccccceeEEecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCcceeEEcCccHHHHhhhh
Confidence 12345667799999999999999999999999999999999999999999731 3568999888743
No 23
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=100.00 E-value=2.2e-69 Score=577.91 Aligned_cols=326 Identities=23% Similarity=0.342 Sum_probs=281.3
Q ss_pred Ccccccc---cCCcccccccCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhh
Q 013518 72 RGTHFRR---AGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKV 148 (441)
Q Consensus 72 ~~~~f~~---~~~r~~~~~~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~ 148 (441)
+...|.. ++|+.+.++.+..+|||||+|||||||||+||+++++++...+++.+||||++||+||+++++++|+++.
T Consensus 57 p~~~~~~~~~~~~~~~~~~~~~~~rIgIv~sGG~APG~nnvI~Gvv~~~~~~~~~~~V~G~~~G~~GLl~~~~v~Lt~~~ 136 (610)
T PLN03028 57 PLAHFLRATAKVPDAQVITEHPAVRVGVVFCGRQSPGGHNVIWGLHDALKAHNPNSVLLGFLGGTEGLFAQKTLEITDDV 136 (610)
T ss_pred cceEEecccccCccccccCCCcccEEEEEccCCCCccHHHHHHHHHHHHHHhCCCcEEEEEccCHHHhcCCCeEECCHHH
Confidence 4566765 3477778877778999999999999999999999999987766678999999999999999999999999
Q ss_pred hhcccccccc-ccccccCC----CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCC
Q 013518 149 VNDIHKRGGT-ILGTSRGG----HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI 223 (441)
Q Consensus 149 v~~~~~~GGs-~LGssR~~----~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi 223 (441)
++.|+++||+ +|||+|.+ +++++++++|++++||+||+||||||+++|..|++++++++.+|+|||||||||||+
T Consensus 137 v~~~~n~GG~~iLGSsR~~l~~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL 216 (610)
T PLN03028 137 LSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDL 216 (610)
T ss_pred HHHHHhcCCchhccCcCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCC
Confidence 9999999998 89999964 358999999999999999999999999999999999999988999999999999999
Q ss_pred C--CCCCCCChhhHHHHHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCC-------CCh-
Q 013518 224 P--VIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESP-------FYL- 293 (441)
Q Consensus 224 ~--~td~s~GfdTA~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~-------~~l- 293 (441)
+ +||+|||||||+++++++|+++++||.|+++||||||+|||+|||||++||||+ +||+|||||+. +++
T Consensus 217 ~~~~td~s~GFdTA~k~~ae~I~ni~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat-~pniilI~EE~~~~~~tL~~iv 295 (610)
T PLN03028 217 KNQFVETNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECALQS-HPNMVILGEEVAASKLTLFDIT 295 (610)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcccccccccchHH
Confidence 8 799999999999999999999999999988899999999999999999999999 89999999964 331
Q ss_pred hhH------------------------HH----------HHh----------------------------------hhhh
Q 013518 294 EGE------------------------ES----------LQS----------------------------------MNQQ 305 (441)
Q Consensus 294 ~~~------------------------e~----------l~~----------------------------------~~~~ 305 (441)
+.+ +. +.. ...+
T Consensus 296 ~~i~~~I~~r~~~gk~~gvIvVsEGlie~ipe~~~li~el~~~~~~g~~~~~~~~~ls~~~~~l~~~lP~~i~~qLl~~~ 375 (610)
T PLN03028 296 KQICDAVQARAEQDKNHGVILIPEGLIESIPEVYALLQEIHGLLKQGVSVDNISSQLSPWASALFEFLPPFIKKQLLLHP 375 (610)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCCccccCchHHHHHHHHHHHHhcCcchhhhhhhcCHHHHHHHhhccHHHHHHHhhcc
Confidence 333 00 000 0136
Q ss_pred hccCCcchhh--hHHHHHHHHHHHhccccce------eeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCc
Q 013518 306 DASGNKLLQD--VGLWISHKIKDHFARLHKM------AINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTG 377 (441)
Q Consensus 306 d~~G~~~l~~--i~~~l~~~I~~~~~~~~~~------~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg 377 (441)
|++||+++.. .+++|++.++++++.+.+. .+....-.+||.|||+.|+.+|..||+.||..|++++.+|+||
T Consensus 376 D~~G~~qls~i~te~lL~~lV~~eL~~r~~~g~~~~~~f~~~~h~~GYe~R~~~PS~fD~~yay~LG~~A~~l~~~G~tG 455 (610)
T PLN03028 376 ESDDSAQLSQIETEKLLAQLVETEMNKRTKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNG 455 (610)
T ss_pred CCCCCeeecchhHHHHHHHHHHHHHHHHhhccccccccccccccccChhhhccCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8999999987 4678888888777644321 2223333689999999999999999999999999999999999
Q ss_pred eEEEEECC-------eEEeechhhhhhc
Q 013518 378 FTVGPVNG-------RHAYIPFNRINER 398 (441)
Q Consensus 378 ~mVg~~~~-------~~~~vPl~~v~~~ 398 (441)
.|++++|- ++..+||..+.+.
T Consensus 456 ~M~~I~nl~~~~~~w~~~~vPl~~~m~~ 483 (610)
T PLN03028 456 YMATVTNLKSPVNKWRCGAAPITAMMSV 483 (610)
T ss_pred eEEEEEeCCCCCeEEEEcccCHHHHhhH
Confidence 99999972 1456999998763
No 24
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=2.3e-67 Score=587.80 Aligned_cols=307 Identities=25% Similarity=0.329 Sum_probs=268.9
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccc-ccccccCCC--
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGGH-- 167 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGssR~~~-- 167 (441)
.+|||||||||||||||+||+++++++...+.+.+||||++||+||+++++++|+++.|++|+++||| +|||+|++.
T Consensus 102 ~krIGILtSGGdAPG~NnvI~gv~~~l~~~~~~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ 181 (1328)
T PTZ00468 102 ARRIGVVLSGGQASGGHNVIAGLMSYIKLCNQSSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIET 181 (1328)
T ss_pred CCEEEEECcCCCchhHHHHHHHHHHHHHHhcCCCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCC
Confidence 37999999999999999999999998865566789999999999999999999999999999999997 999999853
Q ss_pred --CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCC--CCCCCChhhHHHHHHHHH
Q 013518 168 --DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV--IDKSFGFDTAVEEAQRAI 243 (441)
Q Consensus 168 --~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~--td~s~GfdTA~~~~~~~i 243 (441)
++++++++|++++||+||+||||||+++|..|+++++++|++++|||||||||||+++ ||+|||||||+++++++|
T Consensus 182 ee~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~I 261 (1328)
T PTZ00468 182 EEQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQI 261 (1328)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999985 899999999999999999
Q ss_pred HHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCC----hhh----H-------------------
Q 013518 244 NAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFY----LEG----E------------------- 296 (441)
Q Consensus 244 ~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~----l~~----~------------------- 296 (441)
++++++|.|+++||||||+|||+|||||+++|||+ +||+|||||++++ +++ +
T Consensus 262 ~nl~~~A~S~~~rv~~VEVMGR~AGhLAL~~ALAt-ganiiLIPEe~~~k~~tL~dIvd~Iv~~I~kR~~~Gk~ygIIvV 340 (1328)
T PTZ00468 262 GSIMDAIKTEGYGYYFVRLMGRSASHITLECGLQT-RANMILIGEEIKEENRSLMSIVDEIVEMILKRDSLGKKHGIVLL 340 (1328)
T ss_pred HHHHHHhhhcCCeEEEEEeCCcchHHHHHHHHHhc-CCCEEEecCcCccchhhhhHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999999988899999999999999999999999 8999999999988 222 1
Q ss_pred -HHH-------H--------------------------------h---------hhhhhccCCcchhhhH--HHHHHHHH
Q 013518 297 -ESL-------Q--------------------------------S---------MNQQDASGNKLLQDVG--LWISHKIK 325 (441)
Q Consensus 297 -e~l-------~--------------------------------~---------~~~~d~~G~~~l~~i~--~~l~~~I~ 325 (441)
|.+ + . ..++|++||+++..++ ++|++.++
T Consensus 341 sEGliefIpe~~~Li~eln~~l~~~~~g~~i~~~Ls~~~~~lf~~lP~~i~~qLl~~rD~hGnvqls~I~tEklLa~lV~ 420 (1328)
T PTZ00468 341 PEGLIEFIPEFETLIKELNLILLKTNDRKQIIDSLSQEMKTLFLELPSDVQNQLLLERDPHGNVQVAKIATEELLVHMAK 420 (1328)
T ss_pred cCCccccccHHHHHHHHHHHhhccccchhhhhhhcCHHHHHHHHhCcHHHHHHhccccCCCCCEeeccccHHHHHHHHHH
Confidence 000 0 0 0146999999998876 78888888
Q ss_pred HHhccccce--eeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------EEeechhhhh
Q 013518 326 DHFARLHKM--AINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGR-------HAYIPFNRIN 396 (441)
Q Consensus 326 ~~~~~~~~~--~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~~-------~~~vPl~~v~ 396 (441)
+++...... .+.+++-.+||.|||+.|+.+|..||+.||..|++++.+|+||.|++++|.+ +..+||..++
T Consensus 421 ~~L~~~~~~~~~f~~k~HflGYE~RCa~PS~FD~~yayaLG~~Av~l~~~G~TGyMatI~nl~~~~~~W~~~~vPL~~mm 500 (1328)
T PTZ00468 421 EKLEEVKKDYILDNVKTHYFGYEGRCALPSNFDASYCFALGHTAAALIDNQRSGYMAVVRKLSLTPEQWEPAGCPLTYMM 500 (1328)
T ss_pred HHHHHhhcccccCCceEeecCchhhccCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCCCCceEEEEccccHHHHh
Confidence 877422110 0112333589999999999999999999999999999999999999999843 4569999987
Q ss_pred hc
Q 013518 397 ER 398 (441)
Q Consensus 397 ~~ 398 (441)
+.
T Consensus 501 n~ 502 (1328)
T PTZ00468 501 NI 502 (1328)
T ss_pred hH
Confidence 63
No 25
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=4e-66 Score=581.32 Aligned_cols=307 Identities=29% Similarity=0.405 Sum_probs=269.6
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccc-ccccccCC--
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRGG-- 166 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGssR~~-- 166 (441)
.++||||++|||||||||++|+++++++.....+++||||++||+||+++++++|+|..+++|+++||| +|||+|..
T Consensus 176 ~~~rIgIl~SGGpAPGmNavI~Gvv~~a~~~~~g~~VyG~~~G~~GLl~~~~veLt~~~V~~~~n~GGs~iLGSgR~k~~ 255 (1419)
T PTZ00287 176 NVLKIGIILSGGPAPGGHNVISGIYDYAKRYNEQSQVIGFLGGIDGLYSKNYVTITDSLMNRFRNLGGFNMLWSGRGKVR 255 (1419)
T ss_pred CceEEEEEccCCCcHhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHHhhHHhCCChhHhhCCCCCCC
Confidence 447999999999999999999999998865456789999999999999999999999999999999997 89999974
Q ss_pred --CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCC--CCCCCCChhhHHHHHHHH
Q 013518 167 --HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP--VIDKSFGFDTAVEEAQRA 242 (441)
Q Consensus 167 --~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~--~td~s~GfdTA~~~~~~~ 242 (441)
+++++++++|++++||+||+||||||+++|.+|++++.+.+++++|||||||||||++ +||+|||||||+++++++
T Consensus 256 ~~e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~iae~ 335 (1419)
T PTZ00287 256 NKDDLIAIENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKTYSEV 335 (1419)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCC----CCChhhH----------------------
Q 013518 243 INAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPES----PFYLEGE---------------------- 296 (441)
Q Consensus 243 i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~----~~~l~~~---------------------- 296 (441)
|+++++++.++++++||||||||+|||||++||||+ +||+|||||+ +++++++
T Consensus 336 I~ni~~D~~Ss~~~~~VVEVMGR~AG~LAl~~aLAt-gAdlilIPEe~~~~~~~L~dI~~~Iv~~I~kR~~~gk~~gVIv 414 (1419)
T PTZ00287 336 IGNLCTDVKTGHNVYHVVRVMGRSASHVVLECALQT-RPNIVLIGEEVEKENLSLKDIVSNIVNTILKRRSLNKNYGVIL 414 (1419)
T ss_pred HHHHHHHHHHhCCeEEEEEECCCcchHHHHHHHHhc-CCCEEEecCcccccCCCHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 999999888877889999999999999999999999 8999999997 5567663
Q ss_pred ------H------H----H-----------Hh-------------h------hhhhccCCcchhhhH--HHHHHHHHHHh
Q 013518 297 ------E------S----L-----------QS-------------M------NQQDASGNKLLQDVG--LWISHKIKDHF 328 (441)
Q Consensus 297 ------e------~----l-----------~~-------------~------~~~d~~G~~~l~~i~--~~l~~~I~~~~ 328 (441)
+ . + .. . .++|++||+++..++ +.|++.+++++
T Consensus 415 VsEGlie~Ipe~~~Li~eln~~l~~g~~~~~~~~~~~~~f~~LP~~i~~qLl~~rD~~Ghvqls~i~te~lL~~~V~~~L 494 (1419)
T PTZ00287 415 IPEGLIEFVPEMKILIGELNVILKEGPFDASKLKHSREVWDFLPSIIRDQLLMDRESTGYIQVGKIATERLIIVLVESEL 494 (1419)
T ss_pred EeCCcchhcchHHHHHHHhhhhcccCcchhhhhhhhhhhhhhccHHHHhhhhcccCCCCCEeccccchHHHHHHHHHHHH
Confidence 1 0 0 00 0 136999999998763 46666666665
Q ss_pred ccc--cceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECC-------eEEeechhhhhh
Q 013518 329 ARL--HKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPFNRINE 397 (441)
Q Consensus 329 ~~~--~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~-------~~~~vPl~~v~~ 397 (441)
... .+..++++...+||.|||+.|+.+|..||+.||..|++++.+|+||.|++++|- ++..+||..++.
T Consensus 495 ~~~~~~g~~~k~~~h~lGYe~RcA~PS~fD~~yay~LG~~Av~l~~~G~tG~Mv~I~nl~~~~~~w~~~~vPl~~~m~ 572 (1419)
T PTZ00287 495 AKLNDNNLNIQFMAHYLGYEGRCAIPSNFDCNYCYALGYNAALLIDHKKTGYMSIIQNLEDSYANWIPAAIPFLRIMH 572 (1419)
T ss_pred HHHHhcCCCeeEEEeecCcchhccCCcHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCcceeEEcccCHHHHhh
Confidence 422 123467788889999999999999999999999999999999999999999972 245699999877
No 26
>PTZ00287 6-phosphofructokinase; Provisional
Probab=100.00 E-value=7.2e-58 Score=514.79 Aligned_cols=301 Identities=19% Similarity=0.222 Sum_probs=251.0
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccccc-ccccCC--
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTIL-GTSRGG-- 166 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~L-GssR~~-- 166 (441)
..+|||||||||||||||+|||++++++...++ . ++| ++||.||+++++++|+.++|++|+++|||+| ||+|+.
T Consensus 835 ~~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~g-~-~~g-f~G~~GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~f 911 (1419)
T PTZ00287 835 FEIKIGIVFLSRQAPGAMNVLCGLYRRLKLLKG-V-CIA-FYGLYGLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSL 911 (1419)
T ss_pred CCcEEEEECcCCCcHhHHHHHHHHHHHHHHhCC-e-EEE-EeCchhhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCCC
Confidence 458999999999999999999999998864433 3 455 4599999999999999999999999999988 999963
Q ss_pred ---CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCC--CCCCCChhhHHHHHHH
Q 013518 167 ---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV--IDKSFGFDTAVEEAQR 241 (441)
Q Consensus 167 ---~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~--td~s~GfdTA~~~~~~ 241 (441)
+.+++++++|++++||+||+||||||+++|..|+++++++|++++||||||||||||.+ ||+|||||||++++++
T Consensus 912 ~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~se 991 (1419)
T PTZ00287 912 FDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYAS 991 (1419)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999987 9999999999999999
Q ss_pred HHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCC--------hhhH-----------------
Q 013518 242 AINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFY--------LEGE----------------- 296 (441)
Q Consensus 242 ~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~--------l~~~----------------- 296 (441)
+|++|+++|.|++++|||||||||+|||||++||||+ +||+|||||.+++ ++.+
T Consensus 992 aI~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLat-gAniiLIPEe~~~~~~tL~~Iid~I~~~I~~R~~~GK~ygIV 1070 (1419)
T PTZ00287 992 LIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQT-HPNMVIISEEYGAADKTLWRVVQDIADVVCARAELGKNYGTV 1070 (1419)
T ss_pred HHHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhc-CCCEEEecCcccccccchhHHHHHHHHHHHHHHHcCCCcEEE
Confidence 9999999999998889999999999999999999999 8999999999988 4443
Q ss_pred -------H----------HHHhh---------------------------------------------------------
Q 013518 297 -------E----------SLQSM--------------------------------------------------------- 302 (441)
Q Consensus 297 -------e----------~l~~~--------------------------------------------------------- 302 (441)
+ ++...
T Consensus 1071 lV~EGLie~Ipe~k~Li~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lsp~s~~ 1150 (1419)
T PTZ00287 1071 LIPDALLMHLPHMKILLSEISDILNDANEKGQLVEARNDLVNLSTTQHGHLGSTAGTVAGAEQPLSASPWVSKLTPWSLA 1150 (1419)
T ss_pred EEcCcHHHhCHHHHHHHHHHHHHHHhhhhcccccccccchhhccccccccccccccccccccccchhhHHHhhCCHHHHH
Confidence 0 00000
Q ss_pred -------------hhhhccCCcchhhh--HHHHHHHHHHHhccc-------cceeeeeeeeCCCceeccCCCCcchHHHH
Q 013518 303 -------------NQQDASGNKLLQDV--GLWISHKIKDHFARL-------HKMAINLKYIDPTYMIRAIPSNASDNVYC 360 (441)
Q Consensus 303 -------------~~~d~~G~~~l~~i--~~~l~~~I~~~~~~~-------~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a 360 (441)
-++|. |++++..+ -+.|++.+++++..+ .++....++ .||..||+.||-||..||
T Consensus 1151 lf~slP~~i~~qLl~rD~-gn~~vs~IeTE~LL~~mV~~eL~~rk~~g~y~g~F~~~~Hf--fGYegR~~~PS~FD~~y~ 1227 (1419)
T PTZ00287 1151 LLKTFPQFIIKELLHVDL-RSMRFEKLETEQLLLQMVKEELHQRKQKGKYSGSFMGLTHF--FGYQGRSSLPSEFDCKLA 1227 (1419)
T ss_pred HHHhccHHHHHHHhccCC-CCcccccchHHHHHHHHHHHHHHHHHhcCccccccceeeec--cccccccCCCCccchHHH
Confidence 01233 44444332 234555565554322 122222333 699999999999999999
Q ss_pred HHHHHHHHHHHHcCCCceEEEEECC-------eEEeechhhhhh
Q 013518 361 TLLAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPFNRINE 397 (441)
Q Consensus 361 ~~lG~~AV~~~~~G~tg~mVg~~~~-------~~~~vPl~~v~~ 397 (441)
+.||..|..++..|.||.|.+++|= +..-+||..+..
T Consensus 1228 Y~LG~~A~~li~~g~tGym~~i~nl~~~~~~W~~~giPlt~mm~ 1271 (1419)
T PTZ00287 1228 YSYGHAASIVIESGLTGYIVSIRGLCGNIKDWKLFAIPFISLMK 1271 (1419)
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCccCCHHHeEEccchhhhhhc
Confidence 9999999999999999999999872 245688877665
No 27
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=100.00 E-value=2.1e-49 Score=443.92 Aligned_cols=301 Identities=16% Similarity=0.199 Sum_probs=240.8
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCe--eeCC----hhhhhccccccccccccc-
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT--INLT----PKVVNDIHKRGGTILGTS- 163 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~--~~L~----~~~v~~~~~~GGs~LGss- 163 (441)
.+++|||..||++||+|++|.+++..+.+ . .|+||++||.||++++. +.|+ .+.++.|+++||++|+++
T Consensus 675 ~~~vgIv~~g~~aPG~NnVI~g~~~~~~~--~--gvig~~~G~~~L~~~~~~~v~l~~~~~~~~~~~~~n~GG~~~~~~~ 750 (1328)
T PTZ00468 675 CESLGLILSCLSTPGTQNVICGLVNGLPS--L--KQLIVFKSLSDFYEGKALKVDLTSEGSLEFFENSLNSGGCIFPNGV 750 (1328)
T ss_pred ceeEEEEecCCCCccHHHHHHHHHHHHHh--C--CcEEEEechhHHhcCCceEEecccchhHHHHHHHHhcCCeeeeccc
Confidence 37999999999999999999999998863 2 29999999999999874 4565 578999999999999998
Q ss_pred ---------cCC---------C---------------CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcC---
Q 013518 164 ---------RGG---------H---------------DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG--- 207 (441)
Q Consensus 164 ---------R~~---------~---------------~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~--- 207 (441)
|.. + +.+.+.++|++++||+||+||||||+++|..|++++.+++
T Consensus 751 ~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~ 830 (1328)
T PTZ00468 751 EIKMNVSEKKYSNTTLKANDNQEFTNSSCVLSCKGLVSNDFLSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLNG 830 (1328)
T ss_pred cccccccccccCccccccccchhccccccccccccchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhcccc
Confidence 531 1 3477999999999999999999999999999999987764
Q ss_pred --CCceEEEeeccccCCCCC--CCCCCChhhHHHHHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCE
Q 013518 208 --LKVAVAGIPKTIDNDIPV--IDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDC 283 (441)
Q Consensus 208 --~~i~vvgIPkTIDNDi~~--td~s~GfdTA~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~ 283 (441)
..++|||||||||||+++ ||+|||||||+++++++|.++..++.|+++||||||+|||+|||||+++|||+ +||+
T Consensus 831 ~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~~~se~Ign~l~Dtass~kr~~fVevMGR~ag~LAL~~gLat-gani 909 (1328)
T PTZ00468 831 MKSEIPVVFVPVCLENSISHQMIETCIGFDSVTKSISTLVGNLLTDSASATKYWYFMKMIGDKTSNVALEVGIQT-HPNL 909 (1328)
T ss_pred ccCCCcEEEeCccccCCCCCCCccccccHHhHHHHHHHHHHHHHHHHHhcCCcEEEEEECCcChHHHHHHHHHhh-CCCE
Confidence 468999999999999988 99999999999999999955555555556789999999999999999999999 8999
Q ss_pred EEcCCCC--------------CChhhH----------------------------HHH------H----h----------
Q 013518 284 CLIPESP--------------FYLEGE----------------------------ESL------Q----S---------- 301 (441)
Q Consensus 284 iliPE~~--------------~~l~~~----------------------------e~l------~----~---------- 301 (441)
|+|||++ ++++++ |.+ + +
T Consensus 910 vlIpEe~~~~~~~~~~~~~~~~tL~~ii~~I~~~I~~R~~~Gk~ygvIlIsEGlie~ip~~~e~~~li~e~~a~~~~~~~ 989 (1328)
T PTZ00468 910 VVIPERYADSKLSVYGSEMAGVTLDDIITEICDIICLRSNQGNNFGGLLVSEGLFDQVYPTREYRKIFSRFSTQNLCNAS 989 (1328)
T ss_pred EEecCcccccccccccccccccCHHHHHHHHHHHHHHHHHcCCCcEEEEEcCChHHhCCCHHHHHHHHHHHhhhcccccc
Confidence 9999997 564332 111 0 0
Q ss_pred -------------------h-----------h---hhhccCCcchhhh--HHHHHHHHHHHhccc-------cceeeeee
Q 013518 302 -------------------M-----------N---QQDASGNKLLQDV--GLWISHKIKDHFARL-------HKMAINLK 339 (441)
Q Consensus 302 -------------------~-----------~---~~d~~G~~~l~~i--~~~l~~~I~~~~~~~-------~~~~~~~r 339 (441)
. . -.|..|++++..| -+.|++.+++++..+ .++....+
T Consensus 990 ~~~~~~~~~~~~Ls~~~~~~~~~f~~lp~~i~~qL~~~~dgn~~vs~IeTE~lL~~lV~~el~~rk~~g~y~g~f~~~~H 1069 (1328)
T PTZ00468 990 NSGNCEILGSESLSRYEKKVVEDFKLIFSDIDERLIENLINSRKICDVRTEIILSALVQKELKFRRSKNKIKNGMNPVCF 1069 (1328)
T ss_pred chhhhhhhhhccCCHHHHHHHHHHHhhhHHHHHHHHhccCCCcchhhhhHHHHHHHHHHHHHHHHHhcCccccccceeec
Confidence 0 0 0233466666544 335666666554322 12222223
Q ss_pred eeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCC-CceEEEEECC-------eEEeechhhhhhc
Q 013518 340 YIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGY-TGFTVGPVNG-------RHAYIPFNRINER 398 (441)
Q Consensus 340 ~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~-tg~mVg~~~~-------~~~~vPl~~v~~~ 398 (441)
+ .||.-||+.||-||..||+.||..|..++..|. ||.|.++.|- +..-+||..+...
T Consensus 1070 f--fGYegR~~~Ps~FD~~y~y~lG~~A~~li~~g~~~Gym~~i~nl~~~~~~W~~~~iPlt~mm~~ 1134 (1328)
T PTZ00468 1070 S--FTDQVRACIPSDFDSTLGLMYGMLASKIINSNLVGGYVTGIKGVLSQIDSWNMYAIPISSLMTL 1134 (1328)
T ss_pred c--ccccccCCCCCcCchHHHHHHHHHHHHHHHCCCCceEEEEecCccCCHHHheeCccchHHhhCc
Confidence 3 699999999999999999999999999999999 6999999872 2456888877663
No 28
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-45 Score=388.12 Aligned_cols=341 Identities=20% Similarity=0.226 Sum_probs=293.0
Q ss_pred cccccccchhhhCCCCCCCcCCCCCCcccccccccccccChhHHHHHHhccCC-----CCcccccccC----------Cc
Q 013518 18 YVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG----------PR 82 (441)
Q Consensus 18 ~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~----------~r 82 (441)
++.|||.|+++.+|+ .+.+|+.+|+|+++++..|..+..++. +++| +|+.+|..++ |+
T Consensus 291 ~g~eAI~a~l~~a~s------~~~g~~~VRlmgr~~~~it~~~tla~~-~~d~~l~~elr~~~f~~~~~~~~~~~~~~~~ 363 (666)
T KOG2440|consen 291 MGQEAINAALEEAES------AENGNGIVRLMGRESVHITLEATLASR-DKDFCLAPELRGRKFTLNLNTYKILDVVDPR 363 (666)
T ss_pred HHHHHHHHHHhhchh------hcccceeEEehhHHHHHHHHHHHHhcC-ccceeehhhhcchhhhhhhhHHhhhhccccc
Confidence 457899999999888 589999999999999999999999987 6776 5888998876 22
Q ss_pred cc-ccccCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccc
Q 013518 83 QK-VYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILG 161 (441)
Q Consensus 83 ~~-~~~~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LG 161 (441)
.. .++ ...+++++++.|.++.|||++++++++.+. ..++++|++.+||+||..+...++.|.+|..|..+||+.+|
T Consensus 364 ~~~~p~-~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~--~~G~~~~~i~~~~~gl~~d~~~~~~~~dv~~w~~~ggs~~g 440 (666)
T KOG2440|consen 364 AEQDPF-YGEIPGAIGLFGAPAAGLNAAGHSVLRYAE--GAGQDVIAISNGFEGLAKDALGELIWKDVGLWLSQGGSALG 440 (666)
T ss_pred cccCCC-CceeccceeeechhhhHHHHHHHHHHHHhh--hcCceeEeeccchhhhhhhhhhhhHHHHhhcccccCchhhe
Confidence 11 122 122679999999999999999999999884 57799999999999999999999999999999999999999
Q ss_pred cccCC---CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc-CCCceEEEeeccccCCCCCCCCCCChhhHHH
Q 013518 162 TSRGG---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 237 (441)
Q Consensus 162 ssR~~---~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~ 237 (441)
|.|.. .+++.|..+|++++|++|+++||+.++.+...|...+..+ ++++++|.+|.|+.|++|+|++|.|.|||+|
T Consensus 441 tk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~snnvpgt~~s~gvdt~~N 520 (666)
T KOG2440|consen 441 TKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYSNNVPGTEFSLGVDTALN 520 (666)
T ss_pred ecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeecCCccccccccccchhHh
Confidence 99973 3789999999999999999999999999999998877767 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH----HHHHhhhhhhccCCcch
Q 013518 238 EAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE----ESLQSMNQQDASGNKLL 313 (441)
Q Consensus 238 ~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~----e~l~~~~~~d~~G~~~l 313 (441)
.+++.++.+++.+..+++++|++|+||.+|||||.+++|+. +++.+|+||++|+++++ +.+....+....+..++
T Consensus 521 ~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~gyla~~~~l~~-ga~~a~v~e~~~~~~~l~~~~~~~~~k~~~~~~~~l~~ 599 (666)
T KOG2440|consen 521 AWARVCDSTKQSAFGTKRRVFVVETMGGYSGYLATMTGLAP-GADAAYVPEEGFSIKDLRENAEHLAEKMRYGNPRGLQL 599 (666)
T ss_pred hhhhhhhhccCCcccccceeEEEEecCCCccceeccccccc-cccccccccccccHHHHHHHHHHHHHHhhhcCCCceEE
Confidence 99999999999999999999999999999999999999999 79999999999999988 23332233333444556
Q ss_pred hhh-------HHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHc
Q 013518 314 QDV-------GLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVA 373 (441)
Q Consensus 314 ~~i-------~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~ 373 (441)
.+. ...|.+.+.+.-+ . .+..|+..|||+|+||.|+++||.++++||.+|++++..
T Consensus 600 r~e~a~~~~~t~~~~~~~~~~~~--~--~f~~~~~~~gh~qqgg~ps~~dr~~~~~m~~~a~~~~~~ 662 (666)
T KOG2440|consen 600 RNEGADANYTTLFLENIYSEEGK--G--KFQARTNVLGHIQQGGSPSPFDRNMGTKMAVKAIELITI 662 (666)
T ss_pred eCCCcchhhhHHHHHHHHhhhcc--c--ccceeeccccceecCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 543 3345554444322 1 256788899999999999999999999999999998754
No 29
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-45 Score=391.16 Aligned_cols=436 Identities=37% Similarity=0.464 Sum_probs=380.5
Q ss_pred CCCCCCCceecCCC------CcccccccchhhhCCCCCCCcCCCCCCcccccccccccccChhHHHHHHh--ccCCCCcc
Q 013518 3 HSGNLQLKVVNGDA------GYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVV--HKDSPRGT 74 (441)
Q Consensus 3 ~~~~~~~~~~~~~~------~~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~--~~~~~~~~ 74 (441)
|-|....+|.||+. ....|+..+...+.|+.|.+++++..++.+|.+...++..++.|.+.+.. .....+..
T Consensus 24 ~~g~~~~~i~egy~gl~~g~~~i~e~~w~~v~~~~~lggt~~g~ar~~~f~~~~gr~~aa~~~i~~~i~~l~~~ggdgsl 103 (666)
T KOG2440|consen 24 YRGCKVYLIYEGYEGLVRGGDSIKEAQWLRVSYILSLGGTLIGTARCKAFRGREGRLAAADNLIARGIPNLVVIGGDGSL 103 (666)
T ss_pred ccCceEEEEecccccccccccchhhcchhhhCCcccCCCcccccccccccccccceeccchhHHHhhcCeeEecCCccch
Confidence 34566778899998 77899999999999999999999999999999999999999999888763 22334667
Q ss_pred cccccCCcccccccCCCeeEEEEccCCCCcchhHHHHHHHHHHH-HhcCCcEEEEEccc----------------ccccc
Q 013518 75 HFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLY-HMYGVSKILGIDGG----------------YRGFY 137 (441)
Q Consensus 75 ~f~~~~~r~~~~~~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~-~~~~~~~v~Gi~~G----------------~~GL~ 137 (441)
.|.+.+|+++++|.++.+|++|+||||.|||.|.+|+++|-.+. ..|+...++|+.-+ ++||+
T Consensus 104 ~ga~~~p~e~~~~~~elvk~giVt~g~~~pg~~lvI~giVgsidnd~~g~~~~iG~dsal~re~id~~~~ta~sh~RgFv 183 (666)
T KOG2440|consen 104 TGARAFPREWIYLEEELVKAGIVTCGGLCPGGHLVIVGIVGSIDNDMYGTDMTIGIDSALHREAIDAITSTAQSHSRGFV 183 (666)
T ss_pred hHhhhCchhccccchHHhhcceeecccccccCccEEEEEeccccccccccceeeccccchhhhhhhhhhhhhccCcceEE
Confidence 78999999999999999999999999999999999999998775 56777888888776 88999
Q ss_pred cCCe--eeCChhhhhccccccccccccccCCCC---HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceE
Q 013518 138 SKNT--INLTPKVVNDIHKRGGTILGTSRGGHD---TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAV 212 (441)
Q Consensus 138 ~~~~--~~L~~~~v~~~~~~GGs~LGssR~~~~---~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~v 212 (441)
...+ .-+....|..|+..++++++++|..++ +.++++..++.++|.+|||||+++.++|..++++++++.++..+
T Consensus 184 ~evmgr~cg~lalv~~ia~~aD~i~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k~lv 263 (666)
T KOG2440|consen 184 AEVMGRHCGYLALVAAIAGGADTIFIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLKVLV 263 (666)
T ss_pred eeehhhccchHHHHHHhhcCCCEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhheee
Confidence 8887 566667899999999999999999877 78899999999999999999999999999999999999999999
Q ss_pred EEeeccccCCCCCCCCCCChh--hHHHHHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCC-
Q 013518 213 AGIPKTIDNDIPVIDKSFGFD--TAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPES- 289 (441)
Q Consensus 213 vgIPkTIDNDi~~td~s~Gfd--TA~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~- 289 (441)
+++||||||||+-.+.+++|| ||++..+++|.+++.+|.|+-++..+|++|||+|+++|++++||+...|+|++||.
T Consensus 264 ~g~p~TilGdvqrgg~p~afDr~ta~~~g~eAI~a~l~~a~s~~~g~~~VRlmgr~~~~it~~~tla~~~~d~~l~~elr 343 (666)
T KOG2440|consen 264 VGVPKTILGDVQRGGVPSAFDRITACEMGQEAINAALEEAESAENGNGIVRLMGRESVHITLEATLASRDKDFCLAPELR 343 (666)
T ss_pred ecceeeecCccccCCcccccchHHHHHHHHHHHHHHHhhchhhcccceeEEehhHHHHHHHHHHHHhcCccceeehhhhc
Confidence 999999999999888888888 99999999999999999999999999999999999999999999988899999999
Q ss_pred ------------------------CCChh--hH--------HHHHh------------------------hhhhhccCCc
Q 013518 290 ------------------------PFYLE--GE--------ESLQS------------------------MNQQDASGNK 311 (441)
Q Consensus 290 ------------------------~~~l~--~~--------e~l~~------------------------~~~~d~~G~~ 311 (441)
||+.+ .- ..+.+ ....|..++.
T Consensus 344 ~~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ii~~g~~~~~lnaa~~~~v~~a~~~G~~~~~i~~~~~gl~~d~~~~~ 423 (666)
T KOG2440|consen 344 GRKFTLNLNTYKILDVVDPRAEQDPFYGEIPGAIGLFGAPAAGLNAAGHSVLRYAEGAGQDVIAISNGFEGLAKDALGEL 423 (666)
T ss_pred chhhhhhhhHHhhhhccccccccCCCCceeccceeeechhhhHHHHHHHHHHHHhhhcCceeEeeccchhhhhhhhhhhh
Confidence 77666 10 00000 0113666777
Q ss_pred chhhhHHHHHHHHHHHhcccc-ceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCeEEee
Q 013518 312 LLQDVGLWISHKIKDHFARLH-KMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYI 390 (441)
Q Consensus 312 ~l~~i~~~l~~~I~~~~~~~~-~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~~~~~v 390 (441)
.+.+++.|+.+..++++..+. .....+++|+|.|++|..+.++.|-.+++.++..++|.++++++++.+++++....+.
T Consensus 424 ~~~dv~~w~~~ggs~~gtk~~~~e~~~~~~I~~~~~~r~i~gl~~~ggf~a~~~~~~l~g~~~~yt~f~i~~v~ip~t~s 503 (666)
T KOG2440|consen 424 IWKDVGLWLSQGGSALGTKRETPEKMDLKYIAPTLMKRKIDGLAIDGGFEALLAQSALHGARAGYTGFDIPMVNIPATYS 503 (666)
T ss_pred HHHHhhcccccCchhheecccCcccccHHHhHHHHHHhccccceeecchHHHHHHHHHhhhhcCCCCcccceEEeeeeec
Confidence 777888888888877765332 1345789999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhcCCccCcCHHHHHHHHHhcCCCCCCChHHHHHhhhcCCCCC
Q 013518 391 PFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKREKPSCP 438 (441)
Q Consensus 391 Pl~~v~~~~k~v~~~~~~~~~~l~~t~qp~~~~~~~~~~~~~~~~~~~ 438 (441)
|.-..+.....+|..+..|.++++.|.||.|+++....--..+.+.|+
T Consensus 504 nnvpgt~~s~gvdt~~N~~~~~~d~t~Q~a~~T~~~vf~~e~~gg~~g 551 (666)
T KOG2440|consen 504 NNVPGTEFSLGVDTALNAWARVCDSTKQSAFGTKRRVFVVETMGGYSG 551 (666)
T ss_pred CCccccccccccchhHhhhhhhhhhccCCcccccceeEEEEecCCCcc
Confidence 999999989999999999999999999999999876655555677774
No 30
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=93.14 E-value=0.25 Score=48.84 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=41.9
Q ss_pred HHHHHHHhCC------CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhH---HHHHHHH
Q 013518 172 IVDSIQDRGI------NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTA---VEEAQRA 242 (441)
Q Consensus 172 i~~~l~~~~I------d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA---~~~~~~~ 242 (441)
.-+..++|++ |.+++||||||+-.|..... ...+||+||-. -++||-|. .+.+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~-----~~~~PvlGIN~----------G~lGFL~~~~~~~e~~~~ 75 (246)
T PRK04761 11 LEELVKRYGDVPIEEADVIVALGGDGFMLQTLHRYM-----NSGKPVYGMNR----------GSVGFLMNEYSEDDLLER 75 (246)
T ss_pred HHHHHHHhCCCCcccCCEEEEECCCHHHHHHHHHhc-----CCCCeEEEEeC----------CCCCcccCCCCHHHHHHH
Confidence 3444566777 99999999999876554422 34688999875 26899884 3555556
Q ss_pred HHHHH
Q 013518 243 INAAH 247 (441)
Q Consensus 243 i~~i~ 247 (441)
++++.
T Consensus 76 l~~~~ 80 (246)
T PRK04761 76 IAAAE 80 (246)
T ss_pred HHHhh
Confidence 65554
No 31
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.27 E-value=0.44 Score=47.51 Aligned_cols=57 Identities=30% Similarity=0.358 Sum_probs=38.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHH--HHHHHHHHHHHh
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAAHVE 249 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~--~~~~~i~~i~~~ 249 (441)
+.|.+++||||||+-.|..... ..-.++|++||.. -++||-|.++ .+-++++++...
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~---~~~~~iPilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYE---NQLDKVRFVGVHT----------GHLGFYTDWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhc---ccCCCCeEEEEeC----------CCceecccCCHHHHHHHHHHHHcC
Confidence 3689999999999866554432 1114688999874 3799999753 456666666543
No 32
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.60 E-value=0.57 Score=47.24 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=39.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH--HHHHHHHHHHHHh
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVE 249 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~--~~~~~~i~~i~~~ 249 (441)
+.|.+|+||||||+-.|..... ..++||+||-. -++||-|.+ +.+.++++++...
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAA-----EYDKFVLGIHA----------GHLGFLTDITVDEAEKFFQAFFQG 120 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-----CCCCcEEEEeC----------CCcccCCcCCHHHHHHHHHHHHcC
Confidence 6899999999999765544432 34678999853 379999874 5566777776543
No 33
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.94 E-value=0.36 Score=48.07 Aligned_cols=63 Identities=22% Similarity=0.388 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCC-----CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHH--HHHH-
Q 013518 170 SKIVDSIQDRGI-----NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQR- 241 (441)
Q Consensus 170 ~~i~~~l~~~~I-----d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~--~~~~- 241 (441)
+++.+.++.+++ |.+++||||||+-.|...+. ..++||+||-. | ++||-|.++ .+.+
T Consensus 18 ~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~-----~~~iPilGIN~-------G---~lGFL~~~~~~~~~~~ 82 (259)
T PRK00561 18 PKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN-----CAGCKVVGINT-------G---HLGFYTSFNETDLDQN 82 (259)
T ss_pred HHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc-----CCCCcEEEEec-------C---CCccccccCHHHHHHH
Confidence 344455555555 99999999999876654432 35688999863 2 699999654 3444
Q ss_pred HHHHHH
Q 013518 242 AINAAH 247 (441)
Q Consensus 242 ~i~~i~ 247 (441)
.++.+.
T Consensus 83 ~~~~l~ 88 (259)
T PRK00561 83 FANKLD 88 (259)
T ss_pred HHHHHh
Confidence 455443
No 34
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.86 E-value=0.74 Score=45.95 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCC-CceEEEeeccccCCCCCCCCCCChhhHH--HHHHHHHHHHHH
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGL-KVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHV 248 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~-~i~vvgIPkTIDNDi~~td~s~GfdTA~--~~~~~~i~~i~~ 248 (441)
+.|.+++||||||+-.|..... .. .++++||.. +-++||-|.+ +.+.++++++..
T Consensus 39 ~~D~vi~lGGDGT~L~a~~~~~-----~~~~~pilgIn~---------~G~lGFL~~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 39 NANIIVSIGGDGTFLQAVRKTG-----FREDCLYAGIST---------KDQLGFYCDFHIDDLDKMIQAITK 96 (264)
T ss_pred CccEEEEECCcHHHHHHHHHhc-----ccCCCeEEeEec---------CCCCeEcccCCHHHHHHHHHHHHc
Confidence 3689999999999866554432 22 467888754 2489998764 445666666543
No 35
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.32 E-value=0.48 Score=48.27 Aligned_cols=56 Identities=29% Similarity=0.412 Sum_probs=41.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH--HHHHHHHHHHHHhh
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVEA 250 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~--~~~~~~i~~i~~~a 250 (441)
+.|.++++|||||+-.|..... ..++|++||.. -++||-|.+ +.+.++++++...-
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELAR-----AADVPVLGVNL----------GHVGFLAEAEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhc-----cCCCcEEEEec----------CCCceeccCCHHHHHHHHHHHHcCC
Confidence 6899999999999876655432 34578999975 378998875 55667777765443
No 36
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.86 E-value=0.63 Score=47.05 Aligned_cols=57 Identities=28% Similarity=0.368 Sum_probs=41.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH--HHHHHHHHHHHHhhh
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVEAE 251 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~--~~~~~~i~~i~~~a~ 251 (441)
+.|.++++|||||+-.|..... ..++||+||-. -++||-|.+ +.+.++++++.....
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFLt~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVG-----NSNIPILGINT----------GRLGFLATVSKEEIEETIDELLNGDY 122 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEec----------CCCCcccccCHHHHHHHHHHHHcCCc
Confidence 5899999999999766554432 34678999864 379999986 456677777665443
No 37
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.01 E-value=0.71 Score=47.01 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=38.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH--HHHHHHHHHHHHh
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVE 249 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~--~~~~~~i~~i~~~ 249 (441)
++|.+++||||||+-.|..... ..++|++||-. -++||-|.+ +.+.++++++...
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~-----~~~iPilGIN~----------G~lGFLt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLA-----PCGIPLLTINT----------GHLGFLTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhc-----CCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHHHcC
Confidence 6899999999999876554432 35688999942 389999874 4455666665433
No 38
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.83 E-value=0.74 Score=46.65 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=39.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH--HHHHHHHHHHHHh
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVE 249 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~--~~~~~~i~~i~~~ 249 (441)
+.|.++++|||||+-.|..... ...+|++||-. -++||-|.+ +.+.++++++...
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~-----~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIA-----PRAVPIIGINQ----------GHLGFLTQIPREYMTDKLLPVLEG 124 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----ccCCCEEEEec----------CCCeEeeccCHHHHHHHHHHHHcC
Confidence 6899999999999876655432 34678999864 269999984 4456666666543
No 39
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.76 E-value=0.95 Score=45.78 Aligned_cols=53 Identities=26% Similarity=0.496 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHH--HHHHHHHHHH
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAAH 247 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~--~~~~~i~~i~ 247 (441)
+.|.++++|||||+-.|..... ..+++|+||-. -++||-|.++ .+.++++++.
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~-----~~~~Pilgin~----------G~lGFl~~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLA-----RYDIKVIGINR----------GNLGFLTDLDPDNALQQLSDVL 117 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCeEEEEEC----------CCCCcccccCHHHHHHHHHHHH
Confidence 6899999999999876654432 34578999864 3689988865 3445555554
No 40
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.66 E-value=1.3 Score=43.79 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=36.5
Q ss_pred hCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHH--HHHHHHHHHH
Q 013518 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE--AQRAINAAHV 248 (441)
Q Consensus 179 ~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~--~~~~i~~i~~ 248 (441)
.+.|.+++||||||+-.|.... ++||+||-. -++||-|..+. +-++++++..
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~--------~~Pilgin~----------G~lGfl~~~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKV--------GTPLVGFKA----------GRLGFLSSYTLEEIDRFLEDLKN 93 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHc--------CCCEEEEeC----------CCCccccccCHHHHHHHHHHHHc
Confidence 3679999999999986654332 578999862 25899987543 4556666544
No 41
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=88.59 E-value=0.29 Score=48.99 Aligned_cols=62 Identities=24% Similarity=0.531 Sum_probs=42.3
Q ss_pred HHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH--HHHHHHHHHHHH
Q 013518 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHV 248 (441)
Q Consensus 172 i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~--~~~~~~i~~i~~ 248 (441)
....+...+.|.++++|||||+..+..... ..++||+||+. -++||-|.. +.+.++++++..
T Consensus 68 ~~~~~~~~~~D~ii~lGGDGT~L~~~~~~~-----~~~~Pilgin~----------G~lgfl~~~~~~~~~~~l~~~~~ 131 (285)
T PF01513_consen 68 ALEEMLEEGVDLIIVLGGDGTFLRAARLFG-----DYDIPILGINT----------GTLGFLTEFEPEDIEEALEKILA 131 (285)
T ss_dssp CCHHHHCCCSSEEEEEESHHHHHHHHHHCT-----TST-EEEEEES----------SSSTSSSSEEGCGHHHHHHHHHH
T ss_pred hhhhhcccCCCEEEEECCCHHHHHHHHHhc-----cCCCcEEeecC----------CCccccccCCHHHHHHHHHHHhc
Confidence 344567789999999999999987765542 35789999995 256766553 344555555544
No 42
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=87.18 E-value=1 Score=48.74 Aligned_cols=54 Identities=30% Similarity=0.404 Sum_probs=38.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH--HHHHHHHHHHHH
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHV 248 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~--~~~~~~i~~i~~ 248 (441)
++|.+|+||||||+-.|..+.. ...+||+||- --++||-|.+ +.+.++++++..
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~-----~~~iPILGIN----------~G~LGFLt~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFK-----GPVPPVVPFS----------MGSLGFMTPFHSEQYRDCLDAILK 317 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEe----------CCCcceecccCHHHHHHHHHHHHc
Confidence 6899999999999877665543 3457899983 2489999875 345566666543
No 43
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.01 E-value=1.4 Score=44.69 Aligned_cols=55 Identities=29% Similarity=0.413 Sum_probs=40.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH--HHHHHHHHHHHHh
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVE 249 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~--~~~~~~i~~i~~~ 249 (441)
+.|.++++|||||+-.+..... ..++||+||.. -++||-|+. +.+.++++++...
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~----------G~lGFl~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALA-----RHNVPVLGINR----------GRLGFLTDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhc-----CCCCCEEEEeC----------CcccccccCCHHHHHHHHHHHHcC
Confidence 6899999999999876654432 34678999985 368999874 4466677776543
No 44
>PLN02929 NADH kinase
Probab=84.66 E-value=1.8 Score=44.06 Aligned_cols=64 Identities=22% Similarity=0.273 Sum_probs=39.7
Q ss_pred hCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeec---cccCCC-CCC----CCCCChhhHHH--HHHHHHHHHHH
Q 013518 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK---TIDNDI-PVI----DKSFGFDTAVE--EAQRAINAAHV 248 (441)
Q Consensus 179 ~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk---TIDNDi-~~t----d~s~GfdTA~~--~~~~~i~~i~~ 248 (441)
.+.|.+|++|||||+-.|.... ...+||+||-. +.+.-- ... ..++||-+++. .+-++++++..
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~------~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL------DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLF 136 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc------CCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHc
Confidence 3578999999999987655432 23578999844 222110 011 23899999854 44556666543
No 45
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=84.62 E-value=15 Score=36.21 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=86.6
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHH
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (441)
.|||+..--.-|=--.+++++-+.+.+ ++ ..+ +|.++....+.++.
T Consensus 3 ~IGvivp~~~npff~~ii~gIe~~a~~-~G-y~l--------------------------------~l~~t~~~~~~e~~ 48 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAEIIRGIEQEARE-HG-YQL--------------------------------LLCNTGDDEEKEEY 48 (279)
T ss_dssp EEEEEESSSTSHHHHHHHHHHHHHHHH-TT-CEE--------------------------------EEEEETTTHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHH-cC-CEE--------------------------------EEecCCCchHHHHH
Confidence 677777665666666677777776643 22 222 23333333445588
Q ss_pred HHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCC--CCCCCCCCChh--hHHHHHHHHHHHHHH
Q 013518 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND--IPVIDKSFGFD--TAVEEAQRAINAAHV 248 (441)
Q Consensus 173 ~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND--i~~td~s~Gfd--TA~~~~~~~i~~i~~ 248 (441)
++.|.++++|++|+.+-......-..+.+ . .+|+|.+=.+.+++ ++ ++..| .|... +.+.+.
T Consensus 49 i~~l~~~~vDGiI~~s~~~~~~~l~~~~~----~--~iPvV~~~~~~~~~~~~~----~V~~D~~~a~~~---a~~~Li- 114 (279)
T PF00532_consen 49 IELLLQRRVDGIILASSENDDEELRRLIK----S--GIPVVLIDRYIDNPEGVP----SVYIDNYEAGYE---ATEYLI- 114 (279)
T ss_dssp HHHHHHTTSSEEEEESSSCTCHHHHHHHH----T--TSEEEEESS-SCTTCTSC----EEEEEHHHHHHH---HHHHHH-
T ss_pred HHHHHhcCCCEEEEecccCChHHHHHHHH----c--CCCEEEEEeccCCcccCC----EEEEcchHHHHH---HHHHHH-
Confidence 99999999999999976666343333322 2 57899888887776 22 22333 23333 333333
Q ss_pred hhhcCCce-EEEEEe-------cCCCccHHHHHHhhccCCCCEEEcCCCCCChhh
Q 013518 249 EAESIENG-IGVVKL-------MGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG 295 (441)
Q Consensus 249 ~a~s~~~r-v~iVEv-------MGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~ 295 (441)
..+ +++ |.++-. .-|..||..+....-- ..+-.++.+..++.+.
T Consensus 115 -~~G-h~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl-~~~~~~i~~~~~~~~~ 166 (279)
T PF00532_consen 115 -KKG-HRRPIAFIGGPEDSSTSRERLQGYRDALKEAGL-PIDEEWIFEGDFDYES 166 (279)
T ss_dssp -HTT-CCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTS-CEEEEEEEESSSSHHH
T ss_pred -hcc-cCCeEEEEecCcchHHHHHHHHHHHHHHHHcCC-CCCcccccccCCCHHH
Confidence 234 456 666554 3366688775544211 2345566666777653
No 46
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=84.38 E-value=1.2 Score=47.28 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCc-hHHHHHHHHHHHHcCCCceEEEe
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGT-QKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs-~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
.-++|++.|++.++|+++..-.=|| .+....+.+++++.|++ +|.|
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIP--vV~i 370 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIP--VVHI 370 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCC--EEEE
Confidence 4578999999999999999977777 55556678899888865 5543
No 47
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=84.16 E-value=31 Score=32.79 Aligned_cols=127 Identities=7% Similarity=0.056 Sum_probs=67.7
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-CCHHH
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTSK 171 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~~~ 171 (441)
+||++...-..|-...+++++.+.+.+...+..++ +..+... .....
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~ 48 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVT--------------------------------VVSADYDLNKQVS 48 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEE--------------------------------EccCCCCHHHHHH
Confidence 47888877677888888888888775311111111 1111211 22346
Q ss_pred HHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHHHHhhh
Q 013518 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAE 251 (441)
Q Consensus 172 i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i~~~a~ 251 (441)
.++.+...++|++++.+.+... .....+++.+++ ++||.+-. +.+..+.++++|.. .....+.+.+.....
T Consensus 49 ~i~~~~~~~~dgiIi~~~~~~~--~~~~i~~~~~~~--ipvv~~~~----~~~~~~~~V~~d~~-~~g~~~~~~l~~~~~ 119 (271)
T cd06321 49 QIDNFIAAKVDLILLNAVDSKG--IAPAVKRAQAAG--IVVVAVDV----AAEGADATVTTDNV-QAGEISCQYLADRLG 119 (271)
T ss_pred HHHHHHHhCCCEEEEeCCChhH--hHHHHHHHHHCC--CeEEEecC----CCCCccceeeechH-HHHHHHHHHHHHHhC
Confidence 7777888999999998765431 122234444445 56776633 22233456666642 222333333332222
Q ss_pred cCCceEEEEE
Q 013518 252 SIENGIGVVK 261 (441)
Q Consensus 252 s~~~rv~iVE 261 (441)
. ++++.++-
T Consensus 120 g-~~~i~~i~ 128 (271)
T cd06321 120 G-KGNVAILN 128 (271)
T ss_pred C-CceEEEEe
Confidence 4 35677764
No 48
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=83.56 E-value=1.3 Score=45.58 Aligned_cols=50 Identities=38% Similarity=0.677 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCC
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (441)
+|....++.+.++++|-+++.|||||.+.+. +.. +-++||.|||.=.-|=
T Consensus 87 ~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa---~av---~~~vPvLGipaGvk~~ 136 (355)
T COG3199 87 EDTINAVRRMVERGVDLIVFAGGDGTARDVA---EAV---GADVPVLGIPAGVKNY 136 (355)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCCccHHHHH---hhc---cCCCceEeecccccee
Confidence 5788899999999999999999999987654 322 4578999999866653
No 49
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=83.33 E-value=1.9 Score=45.71 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCc-hHHHHHHHHHHHHcCCCceEEEe
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGT-QKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs-~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
..-.+|++.|++.++|+++....=|| .+....+.+++++.|++ +|.|
T Consensus 323 ~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiP--vv~~ 370 (431)
T TIGR01918 323 QFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIP--VVHM 370 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCC--EEEE
Confidence 34578999999999999999988887 55566678899888865 5554
No 50
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.04 E-value=1.6 Score=44.32 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=38.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHH---HHHHHHHHH
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEA---QRAINAAHV 248 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~---~~~i~~i~~ 248 (441)
+.|.++++|||||+..+..... +.++++++|.. .-++||-|..... .++++++..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~-----~~~~pv~gin~---------~G~lGFL~~~~~~~~~~~~l~~i~~ 114 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLA-----PHDIPILSVNV---------GGHLGFLTHPRDLLQDESVWDRLQE 114 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhc-----cCCCCEEEEec---------CCcceEecCchhhcchHHHHHHHHc
Confidence 5899999999999876554432 34678998876 3488999976422 456666554
No 51
>PRK13054 lipid kinase; Reviewed
Probab=82.62 E-value=7.7 Score=38.84 Aligned_cols=89 Identities=22% Similarity=0.305 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHhCCCEEEEEcCCCchHHHH-HHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHH
Q 013518 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAA-VIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 244 (441)
Q Consensus 166 ~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~-~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~ 244 (441)
..+..++++...+.+.|.++++|||||+..+. .|.+. ..+.++++-.||.==-||+. .++|-..-...+.+
T Consensus 42 ~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~--~~~~~~~lgiiP~GTgNdfa---r~lgi~~~~~~a~~--- 113 (300)
T PRK13054 42 KGDAARYVEEALALGVATVIAGGGDGTINEVATALAQL--EGDARPALGILPLGTANDFA---TAAGIPLEPDKALK--- 113 (300)
T ss_pred CCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh--ccCCCCcEEEEeCCcHhHHH---HhcCCCCCHHHHHH---
Confidence 34566777766677899999999999987754 23211 01334678889998888875 34554433333333
Q ss_pred HHHHhhhcCCceEEEEEecCC
Q 013518 245 AAHVEAESIENGIGVVKLMGR 265 (441)
Q Consensus 245 ~i~~~a~s~~~rv~iVEvMGr 265 (441)
.+. ....+.+-+.++-+|
T Consensus 114 ~i~---~g~~~~iDlg~v~~~ 131 (300)
T PRK13054 114 LAI---EGRAQPIDLARVNDR 131 (300)
T ss_pred HHH---hCCceEEEEEEEcCc
Confidence 321 122345666666554
No 52
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.55 E-value=1.5 Score=44.00 Aligned_cols=53 Identities=28% Similarity=0.334 Sum_probs=36.6
Q ss_pred hCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHH--HHHHHHHHHH
Q 013518 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAAH 247 (441)
Q Consensus 179 ~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~--~~~~~i~~i~ 247 (441)
.+.|.++++|||||+-.|..+. ...+++++||. | ++||-|.+. .+-++++++.
T Consensus 56 ~~~d~vi~iGGDGTlL~a~~~~------~~~~pi~gIn~-------G---~lGFl~~~~~~~~~~~l~~i~ 110 (277)
T PRK03708 56 MDVDFIIAIGGDGTILRIEHKT------KKDIPILGINM-------G---TLGFLTEVEPEETFFALSRLL 110 (277)
T ss_pred cCCCEEEEEeCcHHHHHHHHhc------CCCCeEEEEeC-------C---CCCccccCCHHHHHHHHHHHH
Confidence 4789999999999987665432 33688999995 2 568888754 2334444443
No 53
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=81.52 E-value=2.7 Score=42.40 Aligned_cols=53 Identities=25% Similarity=0.417 Sum_probs=38.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH--HHHHHHHHHHH
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAH 247 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~--~~~~~~i~~i~ 247 (441)
+.|.++++|||||+..|..... +.+++++||-. -++||-|.+ +.+-++++++.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~-----~~~~pilGIn~----------G~lGFL~~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLA-----PYGVPLIGINH----------GRLGFITDIPLDDMQETLPPML 117 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC----------CCccccccCCHHHHHHHHHHHH
Confidence 5899999999999876654432 34678999862 368999863 45666776664
No 54
>PRK11914 diacylglycerol kinase; Reviewed
Probab=81.00 E-value=2.7 Score=42.20 Aligned_cols=85 Identities=24% Similarity=0.438 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhh-HHHHHHHHHHH
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDT-AVEEAQRAINA 245 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdT-A~~~~~~~i~~ 245 (441)
.+..++++.+.+.+.|.++++|||||...+.. .+. +.++++-.||.==-||+. .++|..+ -...+.+.+.
T Consensus 51 ~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~---~l~--~~~~~lgiiP~GT~NdfA---r~lg~~~~~~~~a~~~i~- 121 (306)
T PRK11914 51 HDARHLVAAALAKGTDALVVVGGDGVISNALQ---VLA--GTDIPLGIIPAGTGNDHA---REFGIPTGDPEAAADVIV- 121 (306)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHHHhH---Hhc--cCCCcEEEEeCCCcchhH---HHcCCCCCCHHHHHHHHH-
Confidence 35566777777788999999999999886542 222 335678899998889987 5777764 3444444332
Q ss_pred HHHhhhcCCceEEEEEecCC
Q 013518 246 AHVEAESIENGIGVVKLMGR 265 (441)
Q Consensus 246 i~~~a~s~~~rv~iVEvMGr 265 (441)
....+.+-+.++-++
T Consensus 122 -----~g~~~~iDlg~v~~~ 136 (306)
T PRK11914 122 -----DGWTETVDLGRIQDD 136 (306)
T ss_pred -----cCCceEEEEEEEecC
Confidence 122345666666543
No 55
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.71 E-value=1.6 Score=43.77 Aligned_cols=52 Identities=27% Similarity=0.509 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHH--HHHHHHHHH
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAA 246 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~--~~~~~i~~i 246 (441)
+.|.+++||||||+-.|..... ..++||+||-. -++||-|..+ .+.+.+.++
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~-----~~~~PilgIn~----------G~lGFL~~~~~~~~~~~l~~~ 95 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLA-----KYDIPLIGINR----------GNLGFLTDIDPKNAYEQLEAC 95 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----cCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHH
Confidence 6899999999999876654432 34678999853 3689988653 334444443
No 56
>PRK13337 putative lipid kinase; Reviewed
Probab=80.52 E-value=5.8 Score=39.81 Aligned_cols=88 Identities=22% Similarity=0.285 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHH
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i 246 (441)
.+..++++.+.+.+.|.|+++|||||...+..- +...+..+++-.||.==-||+. +++|...-...+++ .+
T Consensus 44 ~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~g---l~~~~~~~~lgiiP~GT~NdfA---r~lgi~~~~~~a~~---~i 114 (304)
T PRK13337 44 GDATLAAERAVERKFDLVIAAGGDGTLNEVVNG---IAEKENRPKLGIIPVGTTNDFA---RALHVPRDIEKAAD---VI 114 (304)
T ss_pred CCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHH---HhhCCCCCcEEEECCcCHhHHH---HHcCCCCCHHHHHH---HH
Confidence 456677777777788999999999998776532 2222334678889988888875 34454433333333 22
Q ss_pred HHhhhcCCceEEEEEecCCC
Q 013518 247 HVEAESIENGIGVVKLMGRY 266 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEvMGr~ 266 (441)
. .+..+.+-+.++-+|.
T Consensus 115 ~---~g~~~~vDlg~vn~~~ 131 (304)
T PRK13337 115 I---EGHTVPVDIGKANNRY 131 (304)
T ss_pred H---cCCeEEEEEEEECCEE
Confidence 2 1223456677776654
No 57
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.74 E-value=3.2 Score=45.79 Aligned_cols=54 Identities=31% Similarity=0.446 Sum_probs=38.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH--HHHHHHHHHHHH
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHV 248 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~--~~~~~~i~~i~~ 248 (441)
++|.+|+||||||+-.|..... ..++||+||-. -++||-|.+ +.+.++++++..
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~-----~~~~PilGin~----------G~lGFL~~~~~~~~~~~l~~~~~ 403 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVN-----GEEIPIICINM----------GTVGFLTEFSKEEIFKAIDSIIS 403 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEcC----------CCCCcCcccCHHHHHHHHHHHHc
Confidence 5799999999999876654432 34678999864 479999975 445566666543
No 58
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.56 E-value=3.5 Score=41.28 Aligned_cols=53 Identities=28% Similarity=0.348 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH--HHHHHHHHHHHHhh
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVEA 250 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~--~~~~~~i~~i~~~a 250 (441)
+.|.++++|||||+-.|... +..||+||-. -++||-|.+ +.+.++++++...-
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~--------~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQR--------AKGPILGINM----------GGLGFLTEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHH--------cCCCEEEEEC----------CCCccCcccCHHHHHHHHHHHHcCC
Confidence 68999999999998654432 1247898843 378998864 34556666665543
No 59
>PRK13055 putative lipid kinase; Reviewed
Probab=75.40 E-value=5.8 Score=40.55 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhh
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDT 234 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdT 234 (441)
.+..++++.+...+.|.|+++|||||+..+.. .+...+..+++--||.==-||+. .++|..+
T Consensus 46 ~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvn---gl~~~~~~~~LgiiP~GTgNdfA---r~Lgi~~ 107 (334)
T PRK13055 46 NSAKNEAKRAAEAGFDLIIAAGGDGTINEVVN---GIAPLEKRPKMAIIPAGTTNDYA---RALKIPR 107 (334)
T ss_pred ccHHHHHHHHhhcCCCEEEEECCCCHHHHHHH---HHhhcCCCCcEEEECCCchhHHH---HHcCCCC
Confidence 35566666666778999999999999876542 22222334568889988788875 3455443
No 60
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=72.31 E-value=81 Score=29.04 Aligned_cols=127 Identities=16% Similarity=0.137 Sum_probs=71.8
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHH
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (441)
|||++..+-..|-.+.+++++-..+.. .+ .++.-+ .+........+.
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~-~g-~~l~~~-------------------------------~~~~~~~~~~~~ 47 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA-AG-YQVLLA-------------------------------NSQNDAEKQLSA 47 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH-cC-CeEEEE-------------------------------eCCCCHHHHHHH
Confidence 588999877788888888888776643 22 111100 011111234567
Q ss_pred HHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHHHHhhhc
Q 013518 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAES 252 (441)
Q Consensus 173 ~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i~~~a~s 252 (441)
++.+...++|++++.+.+.+... ..+.+.+.+ +++|.+-.+.++ .....++++|.. +....+.+.+....
T Consensus 48 ~~~~~~~~~d~ii~~~~~~~~~~---~~~~l~~~~--ip~v~~~~~~~~--~~~~~~v~~d~~-~~~~~~~~~l~~~g-- 117 (264)
T cd01537 48 LENLIARGVDGIIIAPSDLTAPT---IVKLARKAG--IPVVLVDRDIPD--GDRVPSVGSDNE-QAGYLAGEHLAEKG-- 117 (264)
T ss_pred HHHHHHcCCCEEEEecCCCcchh---HHHHhhhcC--CCEEEeccCCCC--CcccceEecCcH-HHHHHHHHHHHHhc--
Confidence 77778889999999988766543 223333334 568887666654 122345555543 23334444444332
Q ss_pred CCceEEEEEec
Q 013518 253 IENGIGVVKLM 263 (441)
Q Consensus 253 ~~~rv~iVEvM 263 (441)
++++.++-..
T Consensus 118 -~~~i~~i~~~ 127 (264)
T cd01537 118 -HRRIALLAGP 127 (264)
T ss_pred -CCcEEEEECC
Confidence 4567776543
No 61
>PLN02727 NAD kinase
Probab=72.12 E-value=3.4 Score=47.79 Aligned_cols=55 Identities=24% Similarity=0.343 Sum_probs=40.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH--HHHHHHHHHHHHh
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVE 249 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~--~~~~~~i~~i~~~ 249 (441)
++|.+|+||||||+-.|..+.. +..+||+||-. -++||-|-+ +.+.+.++++...
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~-----~~~iPILGINl----------GrLGFLTdi~~ee~~~~L~~Il~G 799 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFR-----GAVPPVVSFNL----------GSLGFLTSHYFEDFRQDLRQVIHG 799 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhc-----CCCCCEEEEeC----------CCccccccCCHHHHHHHHHHHHcC
Confidence 6899999999999877766543 34678999864 389999865 4456677766543
No 62
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=71.85 E-value=17 Score=39.29 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=59.2
Q ss_pred cEEEEEcccccccccCCeeeCChhhhhcccccccc---ccccccCCCCHHHHHHHHHHhCCCEEEEEcCCCchHHHH-HH
Q 013518 124 SKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT---ILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAA-VI 199 (441)
Q Consensus 124 ~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs---~LGssR~~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~-~L 199 (441)
.+++-|.|=..|=- .-..+-++.+..+....|- +.-|.+. .+..++++.+...+.|.+|++|||||+..+. -|
T Consensus 112 kr~lvIvNP~SGkg--~a~k~~~~~v~~~L~~~gi~~~v~~T~~~-ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL 188 (481)
T PLN02958 112 KRLLVFVNPFGGKK--SASKIFFDVVKPLLEDADIQLTIQETKYQ-LHAKEVVRTMDLSKYDGIVCVSGDGILVEVVNGL 188 (481)
T ss_pred cEEEEEEcCCCCCc--chhHHHHHHHHHHHHHcCCeEEEEeccCc-cHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHH
Confidence 36777777766632 2122222345544444441 3334333 4556677777677899999999999987543 23
Q ss_pred HHHH-HHcCCCceEEEeeccccCCCCC
Q 013518 200 YEEI-RQRGLKVAVAGIPKTIDNDIPV 225 (441)
Q Consensus 200 ~~~~-~~~~~~i~vvgIPkTIDNDi~~ 225 (441)
.+.- .+.+.++++--||.==-||+.-
T Consensus 189 ~~~~~~~~~~~~pLGiIPaGTgNdfAr 215 (481)
T PLN02958 189 LEREDWKTAIKLPIGMVPAGTGNGMAK 215 (481)
T ss_pred hhCccccccccCceEEecCcCcchhhh
Confidence 2100 0014468899999988999863
No 63
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=71.45 E-value=8.9 Score=38.02 Aligned_cols=50 Identities=26% Similarity=0.410 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEE-eeccccCCCC
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG-IPKTIDNDIP 224 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvg-IPkTIDNDi~ 224 (441)
..++...+.+.|.++++|||||+..+..-.. ... +.+.++ ||.==-||+.
T Consensus 48 ~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~---~~~-~~~~lgiiP~Gt~N~~a 98 (293)
T TIGR00147 48 RYVEEARKFGVDTVIAGGGDGTINEVVNALI---QLD-DIPALGILPLGTANDFA 98 (293)
T ss_pred HHHHHHHhcCCCEEEEECCCChHHHHHHHHh---cCC-CCCcEEEEcCcCHHHHH
Confidence 3444455568999999999999987553221 111 233455 9987777765
No 64
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=71.17 E-value=12 Score=37.46 Aligned_cols=91 Identities=22% Similarity=0.305 Sum_probs=54.1
Q ss_pred cCCCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHH
Q 013518 164 RGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAI 243 (441)
Q Consensus 164 R~~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i 243 (441)
+...+..++++.+.+.+.|.++++|||||+..+..-.-.. ..+..+++..||.==-||+.- ++|-..-. .+++
T Consensus 36 ~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~-~~~~~~~lgiiP~GTgNdfAr---~l~ip~~~---~~a~ 108 (293)
T TIGR03702 36 WEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQI-RDDAAPALGLLPLGTANDFAT---AAGIPLEP---AKAL 108 (293)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhh-CCCCCCcEEEEcCCchhHHHH---hcCCCCCH---HHHH
Confidence 3345667777777778899999999999987654322110 113345788899988888753 33433222 2233
Q ss_pred HHHHHhhhcCCceEEEEEecC
Q 013518 244 NAAHVEAESIENGIGVVKLMG 264 (441)
Q Consensus 244 ~~i~~~a~s~~~rv~iVEvMG 264 (441)
+.+. .+..+.+-+.++-|
T Consensus 109 ~~i~---~g~~~~iDlg~v~~ 126 (293)
T TIGR03702 109 KLAL---NGAAQPIDLARVNG 126 (293)
T ss_pred HHHH---hCCceeeeEEEECC
Confidence 3332 22334566766654
No 65
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=70.98 E-value=8.5 Score=32.96 Aligned_cols=89 Identities=20% Similarity=0.323 Sum_probs=53.8
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccccccccc--CCCCH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR--GGHDT 169 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR--~~~~~ 169 (441)
|||.|+=|||-- .++...+.+.....+||.... --|.. -++.+. ...+.
T Consensus 1 MkVLviGsGgRE-------HAia~~l~~s~~v~~v~~aPG-N~G~~---------------------~~~~~~~~~~~d~ 51 (100)
T PF02844_consen 1 MKVLVIGSGGRE-------HAIAWKLSQSPSVEEVYVAPG-NPGTA---------------------ELGKNVPIDITDP 51 (100)
T ss_dssp EEEEEEESSHHH-------HHHHHHHTTCTTEEEEEEEE---TTGG---------------------GTSEEE-S-TT-H
T ss_pred CEEEEECCCHHH-------HHHHHHHhcCCCCCEEEEeCC-CHHHH---------------------hhceecCCCCCCH
Confidence 688888888743 233444444444557776543 11211 222222 23578
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEE
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (441)
+.+++..++++|| |+|||-..-+. .=|++.+++.|+ +++|
T Consensus 52 ~~l~~~a~~~~id-lvvvGPE~pL~--~Gl~D~l~~~gi--~vfG 91 (100)
T PF02844_consen 52 EELADFAKENKID-LVVVGPEAPLV--AGLADALRAAGI--PVFG 91 (100)
T ss_dssp HHHHHHHHHTTES-EEEESSHHHHH--TTHHHHHHHTT---CEES
T ss_pred HHHHHHHHHcCCC-EEEECChHHHH--HHHHHHHHHCCC--cEEC
Confidence 9999999999999 67788776663 446788887775 4655
No 66
>PRK00861 putative lipid kinase; Reviewed
Probab=70.47 E-value=8.6 Score=38.40 Aligned_cols=86 Identities=23% Similarity=0.385 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHH
Q 013518 166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 245 (441)
Q Consensus 166 ~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~ 245 (441)
..+..++++...+.+.|.++++|||||+..+.. .+. +..+++..||.==-||+. .++|...-...+.+.+
T Consensus 43 ~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~---~l~--~~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~i-- 112 (300)
T PRK00861 43 EIGADQLAQEAIERGAELIIASGGDGTLSAVAG---ALI--GTDIPLGIIPRGTANAFA---AALGIPDTIEEACRTI-- 112 (300)
T ss_pred CCCHHHHHHHHHhcCCCEEEEECChHHHHHHHH---HHh--cCCCcEEEEcCCchhHHH---HHcCCCCCHHHHHHHH--
Confidence 345677777777788999999999999877542 222 224678889987778775 4566655444333332
Q ss_pred HHHhhhcCCceEEEEEecCC
Q 013518 246 AHVEAESIENGIGVVKLMGR 265 (441)
Q Consensus 246 i~~~a~s~~~rv~iVEvMGr 265 (441)
. .+..+.+=+.++-+|
T Consensus 113 -~---~g~~~~iDlg~vn~~ 128 (300)
T PRK00861 113 -L---QGKTRRVDVAYCNGQ 128 (300)
T ss_pred -H---cCCcEEeeEEEECCE
Confidence 1 222344555555444
No 67
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=68.97 E-value=24 Score=37.87 Aligned_cols=93 Identities=15% Similarity=0.288 Sum_probs=60.9
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCH
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~ 169 (441)
-+.+|||+|| ++. |+||-+...+..+++..+|+-+.-=.+| + + .....
T Consensus 134 ~p~~IGVITS--~tg---AairDIl~~~~rR~P~~~viv~pt~VQG----~----------------~-------A~~eI 181 (440)
T COG1570 134 FPKKIGVITS--PTG---AALRDILHTLSRRFPSVEVIVYPTLVQG----E----------------G-------AAEEI 181 (440)
T ss_pred CCCeEEEEcC--Cch---HHHHHHHHHHHhhCCCCeEEEEeccccC----C----------------C-------cHHHH
Confidence 3469999998 554 7899999988888886666644322222 0 0 01123
Q ss_pred HHHHHHHHHhC-CCEEEEEcCCCchHHHHHHHHHHHHc---CCCceEEE
Q 013518 170 SKIVDSIQDRG-INQVYIIGGDGTQKGAAVIYEEIRQR---GLKVAVAG 214 (441)
Q Consensus 170 ~~i~~~l~~~~-Id~LvvIGGdgs~~~a~~L~~~~~~~---~~~i~vvg 214 (441)
-+.++.+.+.+ +|.|||.=|-||..--..+.+|.-.+ ..+||||.
T Consensus 182 v~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 182 VEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred HHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEe
Confidence 34445555555 99999999999998877666654333 55677774
No 68
>PRK12361 hypothetical protein; Provisional
Probab=68.92 E-value=14 Score=40.30 Aligned_cols=88 Identities=18% Similarity=0.300 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCC-ChhhHHHHHHHHHHH
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSF-GFDTAVEEAQRAINA 245 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~-GfdTA~~~~~~~i~~ 245 (441)
.+..++++...+.+.|.++++|||||...+.. .+. +.++++-.||.==-||+. +++ |..+.+....++++.
T Consensus 284 ~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~---~l~--~~~~~lgiiP~GTgNdfA---r~L~gi~~~~~~~~~a~~~ 355 (547)
T PRK12361 284 ISAEALAKQARKAGADIVIACGGDGTVTEVAS---ELV--NTDITLGIIPLGTANALS---HALFGLGSKLIPVEQACDN 355 (547)
T ss_pred ccHHHHHHHHHhcCCCEEEEECCCcHHHHHHH---HHh--cCCCCEEEecCCchhHHH---HHhcCCCCCCccHHHHHHH
Confidence 45667777777788999999999999877543 222 234678889987788775 344 444321222333333
Q ss_pred HHHhhhcCCceEEEEEecCC
Q 013518 246 AHVEAESIENGIGVVKLMGR 265 (441)
Q Consensus 246 i~~~a~s~~~rv~iVEvMGr 265 (441)
+. . ...+.+=+.++-+|
T Consensus 356 i~-~--g~~~~iD~g~vn~~ 372 (547)
T PRK12361 356 II-Q--GHTQRIDTARCNDR 372 (547)
T ss_pred HH-h--CCCeEEEEEEEcCe
Confidence 32 1 22244556565444
No 69
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=68.33 E-value=9.6 Score=38.83 Aligned_cols=52 Identities=21% Similarity=0.196 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH--cCCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ--RGLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~--~~~~i~vvgIPkTI 219 (441)
..+++++.+++.+.|.++-|||--+++.|..++-.... ..-.+++|.||-|-
T Consensus 66 ~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTta 119 (332)
T cd08180 66 VVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTS 119 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCCC
Confidence 46788999999999999999999999988876543322 12247899999983
No 70
>PRK13057 putative lipid kinase; Reviewed
Probab=67.34 E-value=12 Score=37.13 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHHH
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAH 247 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i~ 247 (441)
+..++++. ...+.|.++++|||||+..+..- +. +.++++..||.==-||+.- ++|...-... +++.+.
T Consensus 39 ~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~~---l~--~~~~~lgiiP~GT~Ndfar---~Lg~~~~~~~---a~~~i~ 106 (287)
T PRK13057 39 DLSEVIEA-YADGVDLVIVGGGDGTLNAAAPA---LV--ETGLPLGILPLGTANDLAR---TLGIPLDLEA---AARVIA 106 (287)
T ss_pred HHHHHHHH-HHcCCCEEEEECchHHHHHHHHH---Hh--cCCCcEEEECCCCccHHHH---HcCCCCCHHH---HHHHHH
Confidence 34455555 34678999999999998775422 22 2346789999887888752 4454433333 333332
Q ss_pred HhhhcCCceEEEEEecCC
Q 013518 248 VEAESIENGIGVVKLMGR 265 (441)
Q Consensus 248 ~~a~s~~~rv~iVEvMGr 265 (441)
.++.+++-+.++-+|
T Consensus 107 ---~~~~~~vD~g~~~~~ 121 (287)
T PRK13057 107 ---TGQVRRIDLGWVNGH 121 (287)
T ss_pred ---cCCeEEeeEEEECCE
Confidence 122345666666554
No 71
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=67.30 E-value=12 Score=37.60 Aligned_cols=54 Identities=33% Similarity=0.503 Sum_probs=38.1
Q ss_pred hCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHH--HHHHHHHHHH
Q 013518 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAAH 247 (441)
Q Consensus 179 ~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~--~~~~~i~~i~ 247 (441)
...+.++++|||||+-.+..... ...++|+||=. -++||-|-.. .+-++++++.
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-----~~~~pilgin~----------G~lGFLt~~~~~~~~~~~~~~~ 109 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-----RLDIPVLGINL----------GHLGFLTDFEPDELEKALDALL 109 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-----cCCCCEEEEeC----------CCcccccccCHHHHHHHHHHHh
Confidence 67999999999999987776543 34478998843 3899998876 2334444443
No 72
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=67.20 E-value=12 Score=38.32 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCC
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV 225 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~ 225 (441)
+..+++++.+++.+.|.+|-|||--.++.|..++.. + .+++|.||-|..+|-..
T Consensus 65 ~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~---~--~~p~i~iPTT~~t~s~~ 118 (339)
T cd08173 65 EEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYK---L--GIPFISVPTAASHDGIA 118 (339)
T ss_pred HHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHh---c--CCCEEEecCcccCCccc
Confidence 456788899999999999999999989988877632 2 46799999998776543
No 73
>PRK13059 putative lipid kinase; Reviewed
Probab=67.00 E-value=16 Score=36.51 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=47.9
Q ss_pred HHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHHHHhhhcCC
Q 013518 175 SIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIE 254 (441)
Q Consensus 175 ~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i~~~a~s~~ 254 (441)
...+.+.|.++++|||||...+. +.+.+.+.++++-.||.==-||+. .++|...-...+++. +. .+..
T Consensus 51 ~~~~~~~d~vi~~GGDGTv~evv---~gl~~~~~~~~lgviP~GTgNdfA---r~lgi~~~~~~a~~~---i~---~g~~ 118 (295)
T PRK13059 51 KDIDESYKYILIAGGDGTVDNVV---NAMKKLNIDLPIGILPVGTANDFA---KFLGMPTDIGEACEQ---IL---KSKP 118 (295)
T ss_pred HHhhcCCCEEEEECCccHHHHHH---HHHHhcCCCCcEEEECCCCHhHHH---HHhCCCCCHHHHHHH---HH---hCCc
Confidence 33456789999999999987654 233233556788999998888875 355554433333333 32 1223
Q ss_pred ceEEEEEecCC
Q 013518 255 NGIGVVKLMGR 265 (441)
Q Consensus 255 ~rv~iVEvMGr 265 (441)
+++=+.++-+|
T Consensus 119 ~~vDlg~v~~~ 129 (295)
T PRK13059 119 KKVDLGKINDK 129 (295)
T ss_pred EEeeEEEECCE
Confidence 45555555443
No 74
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=66.36 E-value=9.5 Score=39.27 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc--------------CCCceEEEeeccccCC
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR--------------GLKVAVAGIPKTIDND 222 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~--------------~~~i~vvgIPkTIDND 222 (441)
.+.+++++.++++++|.+|-|||--++..|..++-..... +-.+++|.||-|-.+-
T Consensus 65 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtG 134 (366)
T PF00465_consen 65 EDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTG 134 (366)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSS
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcccc
Confidence 3578999999999999999999999999998887654321 1127999999987653
No 75
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=65.76 E-value=59 Score=35.97 Aligned_cols=97 Identities=24% Similarity=0.285 Sum_probs=66.1
Q ss_pred HHHHHHHHHhC--CCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHHH
Q 013518 170 SKIVDSIQDRG--INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAH 247 (441)
Q Consensus 170 ~~i~~~l~~~~--Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i~ 247 (441)
+++++.++..+ ||+++|-.|--++.-|.+|-+++-.-|++ -++-=|.||| +++.+. +|
T Consensus 111 krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~-yv~fKPGtIe--------------qI~svi----~I- 170 (717)
T COG4981 111 KRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFP-YVAFKPGTIE--------------QIRSVI----RI- 170 (717)
T ss_pred HHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCce-eEEecCCcHH--------------HHHHHH----HH-
Confidence 46666666654 99999999999999999999988776775 4666677776 222222 22
Q ss_pred HhhhcCCceEEEEEecCCCcc-H----------HHHHHhhccCCCCEEEcCCC
Q 013518 248 VEAESIENGIGVVKLMGRYCG-F----------IAMYATLGSRDVDCCLIPES 289 (441)
Q Consensus 248 ~~a~s~~~rv~iVEvMGr~~G-~----------LA~~~aLA~~~ad~iliPE~ 289 (441)
|..++.-=.|+..-|+.+| | ||+++.|.+ .+|++++--.
T Consensus 171 --Aka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~-~~NIvl~vGg 220 (717)
T COG4981 171 --AKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRS-RDNIVLCVGG 220 (717)
T ss_pred --HhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhc-CCCEEEEecC
Confidence 2233333345555555554 3 899999998 6888886444
No 76
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=65.58 E-value=12 Score=38.27 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (441)
+..++++.+++++.|.+|-|||--++..|..++-. ..+|+|.||-|--.
T Consensus 65 ~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~-----~~~P~iaIPTTagT 113 (351)
T cd08170 65 EIERLAEIARDNGADVVIGIGGGKTLDTAKAVADY-----LGAPVVIVPTIAST 113 (351)
T ss_pred HHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHH-----cCCCEEEeCCcccc
Confidence 46788899999999999999999999998887643 24789999998543
No 77
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=65.29 E-value=11 Score=38.63 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCC
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (441)
+..+++++.+++.++|.++-|||--.+..|..++... .+++|.||-|-..+
T Consensus 63 ~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-----~~p~i~VPTT~gtg 113 (347)
T cd08172 63 ENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-----GVPVITVPTLAATC 113 (347)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----CCCEEEecCccccC
Confidence 3577899999999999999999999999888876532 46899999997544
No 78
>PRK06186 hypothetical protein; Validated
Probab=65.25 E-value=13 Score=36.49 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=38.0
Q ss_pred CCCEEEEEcCCCc--hHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHHHHhhhcC
Q 013518 180 GINQVYIIGGDGT--QKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESI 253 (441)
Q Consensus 180 ~Id~LvvIGGdgs--~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i~~~a~s~ 253 (441)
++|+++|.||+|. ..+.....+++++++ +|+.|| |+|++.|+=..+.-+-. ..+|.|.
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~--iP~LGI-------------ClGmQ~avIe~arnv~g-~~dA~s~ 112 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENG--IPFLGT-------------CGGFQHALLEYARNVLG-WADAAHA 112 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcC--CCeEee-------------chhhHHHHHHHHhhhcC-CcCCCcC
Confidence 5799999999997 445566667776544 345554 99999877555543322 3345443
No 79
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=64.12 E-value=15 Score=37.87 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc-------------CCCceEEEeeccccCC
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTIDND 222 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTIDND 222 (441)
+...++++.+++.+.|.+|-|||--.+..|..++-..... .-.+++|.||-|-..+
T Consensus 67 ~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtg 135 (370)
T cd08551 67 SNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTG 135 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcch
Confidence 3467889999999999999999999999888776433110 1147899999986554
No 80
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=63.94 E-value=17 Score=34.83 Aligned_cols=93 Identities=14% Similarity=0.308 Sum_probs=59.1
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccc------ccc--ccCCeeeCCh--hhhhcc----ccccc
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGY------RGF--YSKNTINLTP--KVVNDI----HKRGG 157 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~------~GL--~~~~~~~L~~--~~v~~~----~~~GG 157 (441)
|||||+-.-|-+. ..+...+. .++|+|.+|-+-- +|+ ++.|+.+++. +++.+. ...|+
T Consensus 1 mKIaiIgAsG~~G------s~i~~EA~--~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAG------SRILKEAL--KRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhH------HHHHHHHH--hCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 5899998666544 33445553 4679999997543 444 4567788887 555543 12222
Q ss_pred cccccccC---CCCHHHHHHHHHHhCCCEEEEEcCCCchH
Q 013518 158 TILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQK 194 (441)
Q Consensus 158 s~LGssR~---~~~~~~i~~~l~~~~Id~LvvIGGdgs~~ 194 (441)
.. +.-. ....+.+++.|+.-+..-|+|+||-||+.
T Consensus 73 ~~--~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~ 110 (211)
T COG2910 73 GA--SDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLE 110 (211)
T ss_pred CC--CChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceE
Confidence 11 0000 01245678888888999999999999985
No 81
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=63.02 E-value=65 Score=32.51 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCC
Q 013518 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168 (441)
Q Consensus 89 ~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~ 168 (441)
.-+.||||+|| -..+|+..+++.+-+ .++..+++-+.==++|= -...+
T Consensus 12 ~~p~~I~vITs-~~gAa~~D~~~~~~~----r~~~~~~~~~p~~vQG~---------------------------~A~~~ 59 (319)
T PF02601_consen 12 KFPKRIAVITS-PTGAAIQDFLRTLKR----RNPIVEIILYPASVQGE---------------------------GAAAS 59 (319)
T ss_pred CCCCEEEEEeC-CchHHHHHHHHHHHH----hCCCcEEEEEecccccc---------------------------chHHH
Confidence 34569999998 445666666655543 34544554332222110 00012
Q ss_pred HHHHHHHHHHh----CCCEEEEEcCCCchHHHHHHHHHHHHc---CCCceEE-EeeccccC
Q 013518 169 TSKIVDSIQDR----GINQVYIIGGDGTQKGAAVIYEEIRQR---GLKVAVA-GIPKTIDN 221 (441)
Q Consensus 169 ~~~i~~~l~~~----~Id~LvvIGGdgs~~~a~~L~~~~~~~---~~~i~vv-gIPkTIDN 221 (441)
.-+.++.+.+. .+|.++++=|=||...-..+.+|.-.+ ..++||| ||=-.+|.
T Consensus 60 I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D~ 120 (319)
T PF02601_consen 60 IVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETDF 120 (319)
T ss_pred HHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCCc
Confidence 22334444443 399999999999987765443332211 4455555 45554443
No 82
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=60.53 E-value=17 Score=37.06 Aligned_cols=49 Identities=24% Similarity=0.347 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (441)
..+++++.+++.+.|.+|-|||--.++.|..++-.. .+++|.||-|-..
T Consensus 65 ~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~-----~~p~i~IPTtatg 113 (337)
T cd08177 65 VTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRT-----GLPIIAIPTTLSG 113 (337)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-----cCCEEEEcCCchh
Confidence 467889999999999999999999999888776432 4679999988643
No 83
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.44 E-value=1e+02 Score=29.17 Aligned_cols=90 Identities=12% Similarity=0.147 Sum_probs=55.3
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHH
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (441)
.|||+...-..|-++.+++++.+.+.+ ++ ..++- ..+........+.
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~~~ 47 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRA-AG-YSLLI-------------------------------ANSLNDPERELEI 47 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCChHHHHHH
Confidence 378888777788899999999887753 32 23321 0011111234567
Q ss_pred HHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeecccc
Q 013518 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (441)
Q Consensus 173 ~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (441)
++.|.++++|++++.+++.... .+.+.+++++ +|+|.+=...+
T Consensus 48 i~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~~--ipvV~i~~~~~ 90 (269)
T cd06281 48 LRSFEQRRMDGIIIAPGDERDP---ELVDALASLD--LPIVLLDRDMG 90 (269)
T ss_pred HHHHHHcCCCEEEEecCCCCcH---HHHHHHHhCC--CCEEEEecccC
Confidence 8889999999999998864322 2334444445 56776644444
No 84
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=60.37 E-value=9.8 Score=39.03 Aligned_cols=50 Identities=22% Similarity=0.421 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHhCC---CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 167 HDTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 167 ~~~~~i~~~l~~~~I---d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
+..+++++.++++++ |.++-|||--.+..|..++... .+| +++|.||-|.
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTT~ 121 (345)
T cd08195 69 ETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATY-MRG--IDFIQIPTTL 121 (345)
T ss_pred HHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHH-hcC--CCeEEcchhH
Confidence 356788999999998 9999999998888887665422 235 6799999997
No 85
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=60.31 E-value=21 Score=36.95 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcC--------------CCceEEEeeccccCC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG--------------LKVAVAGIPKTIDND 222 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~--------------~~i~vvgIPkTIDND 222 (441)
..+++++.+++.++|.+|-|||--++..|..++-....-+ -.+++|.||-|--.+
T Consensus 71 ~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTG 139 (374)
T cd08189 71 NVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTG 139 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccc
Confidence 4678999999999999999999999999887754332111 126899999886443
No 86
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=60.24 E-value=14 Score=38.20 Aligned_cols=62 Identities=24% Similarity=0.412 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHhCC---CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhH
Q 013518 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTA 235 (441)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA 235 (441)
..+++++.+++.++ |.++.|||--.+..|..++-.. .++ +++|.||-|. +..+|-++|--++
T Consensus 77 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~g--ip~i~IPTT~---~s~~ds~~~~k~~ 141 (358)
T PRK00002 77 TLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATY-MRG--IRFIQVPTTL---LAQVDSSVGGKTG 141 (358)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHh-cCC--CCEEEcCchh---hhccccCcCCcee
Confidence 46788889999887 9999999999898887766321 234 6799999997 2334444443333
No 87
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=60.19 E-value=17 Score=37.37 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCC
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (441)
+..+++++.+++.+.|.++-|||-=.+..|..++ + .++ +++|.||-|...|
T Consensus 74 ~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA-~--~rg--ip~I~IPTT~~td 124 (350)
T PRK00843 74 EEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAA-Y--RLG--IPFISVPTAASHD 124 (350)
T ss_pred HHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHH-H--hcC--CCEEEeCCCccCC
Confidence 3467889999999999999999988888887776 2 234 6799999997543
No 88
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=58.91 E-value=17 Score=36.67 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (441)
..+++++.+++.+.|.++-|||--.++.|..++-... + .+++|.||-|...
T Consensus 66 ~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~-~--~~p~i~iPTt~~t 116 (332)
T cd07766 66 EVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN-R--GLPIIIVPTTAAT 116 (332)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc-C--CCCEEEEeCCCch
Confidence 4678889999999999999999999998887765432 2 4679999998655
No 89
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=58.35 E-value=23 Score=36.92 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc--------------CCCceEEEeecc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR--------------GLKVAVAGIPKT 218 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~--------------~~~i~vvgIPkT 218 (441)
..+++++.+++++.|.++-|||--.++.|..++-.+... ...+|+|.||-|
T Consensus 72 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 72 QVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 467899999999999999999999999988776433110 123678888875
No 90
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=58.32 E-value=21 Score=36.17 Aligned_cols=68 Identities=24% Similarity=0.327 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHH-HHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhh-HHHHHHHHH
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGA-AVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDT-AVEEAQRAI 243 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a-~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdT-A~~~~~~~i 243 (441)
+..++++.+...+.|.+++.|||||...+ .-|.+ .+.+. +--||.==-||+. +++|... ....+.+.+
T Consensus 46 ~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~----~~~~~-LgilP~GT~NdfA---r~Lgip~~~~~~Al~~i 115 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAG----TDDPP-LGILPGGTANDFA---RALGIPLDDIEAALELI 115 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhc----CCCCc-eEEecCCchHHHH---HHcCCCchhHHHHHHHH
Confidence 67788888888899999999999998743 33432 33332 7778987777764 3566665 244444444
No 91
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=58.15 E-value=35 Score=31.45 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=50.4
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (441)
..||.++ |+ .|+ ++..+++.+.+.|++.++.|.++||-+..+.+ +.++.|...+-.++=.+=+....|
T Consensus 46 ~~~v~ll--G~-~~~---~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~------~i~~~I~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 46 GLRVFLL--GA-KPE---VLEKAAERLRARYPGLKIVGYHHGYFGPEEEE------EIIERINASGADILFVGLGAPKQE 113 (171)
T ss_pred CCeEEEE--CC-CHH---HHHHHHHHHHHHCCCcEEEEecCCCCChhhHH------HHHHHHHHcCCCEEEEECCCCHHH
Confidence 4677777 44 443 44455555666799999999999998753322 134555544444332222223345
Q ss_pred HHHHHHH-HhCCCEEEEEcC
Q 013518 171 KIVDSIQ-DRGINQVYIIGG 189 (441)
Q Consensus 171 ~i~~~l~-~~~Id~LvvIGG 189 (441)
..+..++ +.+-..++.+||
T Consensus 114 ~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 114 LWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred HHHHHHHHHCCCCEEEEece
Confidence 5444444 445667777888
No 92
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=56.85 E-value=1.3e+02 Score=30.31 Aligned_cols=93 Identities=16% Similarity=0.220 Sum_probs=58.4
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccc-cCCCC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTS-RGGHD 168 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGss-R~~~~ 168 (441)
+..+||++..+-..|--+.+++++.+.+.+ ++ .++. +.++ .....
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~-~g-~~l~--------------------------------i~~~~~~~~~ 69 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVF--------------------------------VQSANGNEET 69 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EECCCCCHHH
Confidence 467999999888889999999999887753 22 2322 1111 11123
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeecccc
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (441)
..+.++.|..+++|++++.+.+.+.. ....+.+.+.+ +|||.+-..++
T Consensus 70 ~~~~i~~l~~~~vDGiIi~~~~~~~~--~~~l~~~~~~~--iPvV~id~~~~ 117 (330)
T PRK10355 70 QMSQIENMINRGVDVLVIIPYNGQVL--SNVIKEAKQEG--IKVLAYDRMIN 117 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhH--HHHHHHHHHCC--CeEEEECCCCC
Confidence 45678888999999999997653311 12223444445 56887754443
No 93
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=56.69 E-value=22 Score=36.42 Aligned_cols=49 Identities=18% Similarity=0.429 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHhCC---CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
..+++++.+++++. |.++.|||--.+..|..++... .++ +++|.||-|.
T Consensus 66 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~-~~~--~p~i~VPTT~ 117 (344)
T TIGR01357 66 TVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATY-MRG--IRFIQVPTTL 117 (344)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHH-ccC--CCEEEecCch
Confidence 46788899999988 8999999999999887776322 234 6799999997
No 94
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=56.53 E-value=1.2e+02 Score=29.93 Aligned_cols=87 Identities=15% Similarity=0.226 Sum_probs=53.0
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (441)
...||++...-..|-.+.++.++...+.+ ++ ..++- .-+....+...
T Consensus 64 ~~~Igvv~~~~~~~~~~~i~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 110 (342)
T PRK10014 64 SGVIGLIVRDLSAPFYAELTAGLTEALEA-QG-RMVFL-------------------------------LQGGKDGEQLA 110 (342)
T ss_pred CCEEEEEeCCCccchHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCCHHHHH
Confidence 35899999776778888888888877743 22 22210 00111122345
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
..++.|...++|++++.+.+.... .+.+.+++.+ +|+|.+
T Consensus 111 ~~~~~l~~~~vdgiIi~~~~~~~~---~~~~~l~~~~--iPvV~~ 150 (342)
T PRK10014 111 QRFSTLLNQGVDGVVIAGAAGSSD---DLREMAEEKG--IPVVFA 150 (342)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCcH---HHHHHHhhcC--CCEEEE
Confidence 677888899999999998765422 2233444445 456644
No 95
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=56.34 E-value=16 Score=37.87 Aligned_cols=64 Identities=33% Similarity=0.479 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHhCC----CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH
Q 013518 167 HDTSKIVDSIQDRGI----NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 236 (441)
Q Consensus 167 ~~~~~i~~~l~~~~I----d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~ 236 (441)
+..+++++.+.+.++ |.++-|||--.+..|..++-.. .+| +++|.||-|. +..+|-+.|.-+++
T Consensus 71 ~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~-~rg--~p~i~VPTT~---lA~vD~~~g~K~~i 138 (354)
T cd08199 71 DTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLY-RRG--TPYVRIPTTL---VGLIDAGVGIKTGV 138 (354)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEEcCcc---ceeeecCCCCceEE
Confidence 346788889999998 9999999988888877766422 234 6799999997 23334455544443
No 96
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=56.11 E-value=24 Score=36.58 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH-------------cCCCceEEEeecc
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKT 218 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkT 218 (441)
+..+++++.++++++|.+|-|||--.+..|..++-.... ....+++|.||-|
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 67 ESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 346788999999999999999999999988876521110 1234789999988
No 97
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=55.61 E-value=26 Score=36.31 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHH
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY 200 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~ 200 (441)
..+++++.+++.++|.+|-|||--+++.|..++
T Consensus 69 ~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia 101 (375)
T cd08179 69 TVLKGAEAMREFEPDWIIALGGGSPIDAAKAMW 101 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 467889999999999999999999999998775
No 98
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=55.05 E-value=18 Score=37.12 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP 224 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~ 224 (441)
...++++.+++.+.|.+|-|||--.+..|..++.. ..+++|.||-|-..+-.
T Consensus 65 ~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~-----~~~p~i~VPTtagtgse 116 (349)
T cd08550 65 EVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADR-----LDKPIVIVPTIASTCAA 116 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEeCCccccCcc
Confidence 46788999999999999999999999988887642 24679999998555433
No 99
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=54.37 E-value=26 Score=36.86 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc-------------CCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTI 219 (441)
..++.++.+++.+.|.+|-|||--+++.|..++-....- .-.+|+|.||-|-
T Consensus 94 ~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTta 158 (395)
T PRK15454 94 DVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTA 158 (395)
T ss_pred HHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCC
Confidence 467889999999999999999999999998765432110 1236788888764
No 100
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=54.21 E-value=31 Score=36.16 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHH
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY 200 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~ 200 (441)
..+++++.++++++|.+|-|||--++..|..++
T Consensus 66 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 66 TVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 467889999999999999999999999988775
No 101
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=54.08 E-value=24 Score=36.47 Aligned_cols=47 Identities=26% Similarity=0.372 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
..+++++.+++++.|.+|-|||--.+..|..++-. ..+++|.||-|-
T Consensus 72 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~-----~~~p~i~IPTta 118 (366)
T PRK09423 72 EIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADY-----LGVPVVIVPTIA 118 (366)
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHH-----cCCCEEEeCCcc
Confidence 46688899999999999999999999988877632 246799999973
No 102
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=54.07 E-value=27 Score=36.35 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc---------------CCCceEEEeecc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR---------------GLKVAVAGIPKT 218 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~---------------~~~i~vvgIPkT 218 (441)
..+++++.+++.+.|.++-|||--.++.|..++-....- .-.+++|.||-|
T Consensus 74 ~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 74 VVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 467889999999999999999999999887665321110 123789999988
No 103
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=53.22 E-value=26 Score=36.17 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH-----------------cCCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-----------------RGLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~-----------------~~~~i~vvgIPkTI 219 (441)
..+++++.++++++|.+|-|||--+++.|..++-.... ..-.+++|.||-|-
T Consensus 65 ~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 133 (367)
T cd08182 65 DLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTA 133 (367)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCC
Confidence 46788899999999999999999999988877643210 01247899999884
No 104
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=53.12 E-value=31 Score=35.57 Aligned_cols=53 Identities=23% Similarity=0.210 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH------------cCCCceEEEeeccc
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ------------RGLKVAVAGIPKTI 219 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~------------~~~~i~vvgIPkTI 219 (441)
+..+++++.+++.+.|.++-|||--+++.|..++-.... ..-.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 70 ETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 346789999999999999999999999998866532110 12247899999875
No 105
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=53.04 E-value=18 Score=37.47 Aligned_cols=65 Identities=20% Similarity=0.367 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHhCC---CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHH
Q 013518 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (441)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~ 238 (441)
..+++++.+.+.+. |.++.|||--++..|..++-. -.+|. +.+.||.|.- ...|-++|.-|++|.
T Consensus 61 ~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~-~~rgi--~~i~iPTTll---a~vds~ig~k~~vn~ 128 (346)
T cd08196 61 AVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASI-YMRGV--SWSFVPTTLL---AQVDSCIGSKSSINV 128 (346)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHH-HHcCC--CeEEecccHH---HhhhccccccceecC
Confidence 46788999999999 899999998888887766542 23564 6899999863 234556676666664
No 106
>PRK10586 putative oxidoreductase; Provisional
Probab=51.74 E-value=22 Score=36.93 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChh
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFD 233 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~Gfd 233 (441)
.+++.+..+ .+.|.+|-|||--++..|..++.. ..+|+|.||-|-.+|-+.|..+.-++
T Consensus 76 v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~-----~~~p~i~vPT~a~t~s~~s~~avi~~ 134 (362)
T PRK10586 76 VAQLAAASG-DDRQVVIGVGGGALLDTAKALARR-----LGLPFVAIPTIAATCAAWTPLSVWYN 134 (362)
T ss_pred HHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhh-----cCCCEEEEeCCccccccccCceEEEC
Confidence 445555443 578999999999999999888753 35789999999999887776666554
No 107
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=51.09 E-value=33 Score=35.59 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH-------------cCCCceEEEeeccc
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTI 219 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTI 219 (441)
+..+++++.+++.++|.+|-|||--.++.|..++-.... ..-.+++|.||-|-
T Consensus 70 ~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 70 AVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 347789999999999999999999999988777543210 01246899999875
No 108
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=51.04 E-value=26 Score=36.34 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHhCCC---EEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCCh
Q 013518 168 DTSKIVDSIQDRGIN---QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGF 232 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id---~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~Gf 232 (441)
..+++++.++++++| .++.|||--.+..|..++-.. .++ +++|.||-|. +..+|-++|-
T Consensus 69 ~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~-~rg--ip~I~IPTTl---la~~da~i~~ 130 (355)
T cd08197 69 TLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALL-FRG--IRLVHIPTTL---LAQSDSVLSL 130 (355)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CCEEEecCcc---cccccccccC
Confidence 467889999999998 999999988888776665321 234 6799999985 2344444443
No 109
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=50.90 E-value=35 Score=31.64 Aligned_cols=9 Identities=33% Similarity=0.730 Sum_probs=6.4
Q ss_pred CceEEEeec
Q 013518 209 KVAVAGIPK 217 (441)
Q Consensus 209 ~i~vvgIPk 217 (441)
.+||||+|-
T Consensus 80 ~lPViGVPv 88 (162)
T COG0041 80 PLPVIGVPV 88 (162)
T ss_pred CCCeEeccC
Confidence 467888885
No 110
>PRK15138 aldehyde reductase; Provisional
Probab=50.70 E-value=32 Score=35.98 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHH
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYE 201 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~ 201 (441)
+..+++++.+++.+.|.+|-|||--++..|..++-
T Consensus 72 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~ia~ 106 (387)
T PRK15138 72 ETLMKAVKLVREEKITFLLAVGGGSVLDGTKFIAA 106 (387)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHH
Confidence 35778899999999999999999999999887753
No 111
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=50.48 E-value=48 Score=34.43 Aligned_cols=122 Identities=17% Similarity=0.302 Sum_probs=68.1
Q ss_pred CCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC---eeeCChhhhhccccccccccccccC
Q 013518 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN---TINLTPKVVNDIHKRGGTILGTSRG 165 (441)
Q Consensus 89 ~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~---~~~L~~~~v~~~~~~GGs~LGssR~ 165 (441)
...+||.|+-+|| |-|+++..+.+.- ..+-+.+.+.-..++|.... -+.+......+...-+--.+|-.-.
T Consensus 9 ~~~~~I~VIGvGg---~G~n~v~~m~~~~---~~gve~ia~nTD~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aA 82 (338)
T COG0206 9 SLKARIKVIGVGG---AGGNAVNRMIEEG---VEGVEFIAINTDAQALKSSKADRKILIGESITRGLGAGANPEVGRAAA 82 (338)
T ss_pred ccCceEEEEEeCC---cchHHHHHHHHhh---hCceEEEEeccCHHHHhccccCeEEEeccceeeccCCCCCcHHHHHHH
Confidence 3457999999988 4566777766543 23468999988888886433 1222221111111000011211111
Q ss_pred CCCHHHHHHHHHHhCCCEEEEEcCCCc--hHH-HHHHHHHHHHcCC-CceEEEeecc
Q 013518 166 GHDTSKIVDSIQDRGINQVYIIGGDGT--QKG-AAVIYEEIRQRGL-KVAVAGIPKT 218 (441)
Q Consensus 166 ~~~~~~i~~~l~~~~Id~LvvIGGdgs--~~~-a~~L~~~~~~~~~-~i~vvgIPkT 218 (441)
.++.+++.+.|+ +.|.+|++=|.|- -++ |-.+++.++++|. -+.|+..|-+
T Consensus 83 ee~~~~I~~~l~--g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~ 137 (338)
T COG0206 83 EESIEEIEEALK--GADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFS 137 (338)
T ss_pred HHHHHHHHHHhc--cCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecch
Confidence 246778888885 4667777755443 222 4567787777653 3556666643
No 112
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=49.76 E-value=1.7e+02 Score=28.25 Aligned_cols=83 Identities=14% Similarity=0.057 Sum_probs=47.4
Q ss_pred eEEEEccCCC-CcchhHHHHHHHHHHHHhcCCcEEEEE--cccccccccCCeeeCChhhhhccccccccccccccCCCCH
Q 013518 93 HACIVTCGGL-CPGLNTVIREIVCGLYHMYGVSKILGI--DGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (441)
Q Consensus 93 ~iaIl~sGG~-apGmNa~Ir~~v~~~~~~~~~~~v~Gi--~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~ 169 (441)
||+|+....+ ..|+...++.+++.+.+. ++++.-+ ............ .++............
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~--g~~v~v~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 65 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSAR--GPDVLVVSVAALYPSLLYGGE-------------QEVVRVIVLDNPLDY 65 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhc--CCeEEEEEeecccCcccCCCc-------------ccceeeeecCCchhH
Confidence 6888887766 789999999999988643 3444333 222221111100 011111111112345
Q ss_pred HHHHHHHHHhCCCEEEEEcCC
Q 013518 170 SKIVDSIQDRGINQVYIIGGD 190 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGd 190 (441)
..+.+.+++.+.|.+++.-..
T Consensus 66 ~~~~~~~~~~~~dii~~~~~~ 86 (366)
T cd03822 66 RRAARAIRLSGPDVVVIQHEY 86 (366)
T ss_pred HHHHHHHhhcCCCEEEEeecc
Confidence 677788899999988775533
No 113
>PLN02834 3-dehydroquinate synthase
Probab=49.56 E-value=18 Score=38.57 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHhCCC---EEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGIN---QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id---~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
..+++++.+.++++| .++.|||--.+..|..++-.. .+| +++|.||-|.
T Consensus 148 ~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y-~rg--iplI~VPTTl 199 (433)
T PLN02834 148 TLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASY-QRG--VNFVQIPTTV 199 (433)
T ss_pred HHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCcC
Confidence 467888889999998 999999998888877654321 234 6799999994
No 114
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=49.43 E-value=40 Score=35.18 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH-------------cCCCceEEEeeccccC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTIDN 221 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTIDN 221 (441)
..+++++.+++.+.|.++-|||--+++.|..++-.... ....+++|.||-|=-.
T Consensus 76 ~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagT 142 (383)
T PRK09860 76 NVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGT 142 (383)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcc
Confidence 46789999999999999999999999998877631110 0234789999987543
No 115
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=49.23 E-value=38 Score=35.19 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH-------------cCCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTI 219 (441)
..+++++.+++.+.|.++-|||--.++.|..++-.... ....+|+|.||-|-
T Consensus 73 ~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTta 137 (377)
T cd08176 73 NVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTA 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCC
Confidence 46788999999999999999999999988877532111 12347899999865
No 116
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=49.03 E-value=30 Score=35.49 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (441)
..+++++..++.+.|.++-|||--.+..|..++-. +.+++|.||-|-..
T Consensus 66 ~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~-----~~~p~i~VPTt~gt 114 (345)
T cd08171 66 NVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADK-----LGKPVFTFPTIASN 114 (345)
T ss_pred HHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHH-----cCCCEEEecCcccc
Confidence 45678888899999999999999999988877653 24679999998533
No 117
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=48.63 E-value=2.9e+02 Score=27.60 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=54.4
Q ss_pred CCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCC-
Q 013518 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH- 167 (441)
Q Consensus 89 ~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~- 167 (441)
.+..+||++...-.-|-.+.++.++.+.+.+ +++..++ +.++....
T Consensus 22 ~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~ 68 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFMSVVRKAIEKDAKA-APDVQLL--------------------------------MNDSQNDQS 68 (330)
T ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHH
Confidence 4456889888666678888888888877753 2221221 11112111
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeec
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (441)
...+.++.|...++|++++.+.+..... ...+++++.++ |+|.+=.
T Consensus 69 ~~~~~i~~l~~~~vdgiIi~~~~~~~~~--~~l~~l~~~gi--PvV~vd~ 114 (330)
T PRK15395 69 KQNDQIDVLLAKGVKALAINLVDPAAAP--TVIEKARGQDV--PVVFFNK 114 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCHHHHH--HHHHHHHHCCC--cEEEEcC
Confidence 2335677899999999999987754322 22244444554 5665533
No 118
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=48.39 E-value=33 Score=35.58 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH------------------cCCCceEEEeecccc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ------------------RGLKVAVAGIPKTID 220 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~------------------~~~~i~vvgIPkTID 220 (441)
..+++++.+++.++|.++-|||--.++.|..++-.... ..-.+++|.||-|--
T Consensus 71 ~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtag 141 (380)
T cd08185 71 TVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAG 141 (380)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCCh
Confidence 46788899999999999999999999998877543210 012478999998743
No 119
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=48.21 E-value=11 Score=32.72 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=35.0
Q ss_pred HHHHHHHHHhC-CCEEEEEcCCCchHHHHHHHHHHHHcCC--CceEEEeeccccCCCCCCCCCCChhhHHHH
Q 013518 170 SKIVDSIQDRG-INQVYIIGGDGTQKGAAVIYEEIRQRGL--KVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (441)
Q Consensus 170 ~~i~~~l~~~~-Id~LvvIGGdgs~~~a~~L~~~~~~~~~--~i~vvgIPkTIDNDi~~td~s~GfdTA~~~ 238 (441)
+.+....+..+ .+.++++|||||+..+.. .+.+... .+++..||.==-||+. +++|+.+-...
T Consensus 43 ~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~---~l~~~~~~~~~~l~iiP~GT~N~~a---r~lg~~~~~~~ 108 (130)
T PF00781_consen 43 EALARILALDDYPDVIVVVGGDGTLNEVVN---GLMGSDREDKPPLGIIPAGTGNDFA---RSLGIPSDPEA 108 (130)
T ss_dssp HHHHHHHHHTTS-SEEEEEESHHHHHHHHH---HHCTSTSSS--EEEEEE-SSS-HHH---HHTT--SSHHH
T ss_pred HHHHHHHhhccCccEEEEEcCccHHHHHHH---HHhhcCCCccceEEEecCCChhHHH---HHcCCCCCcHH
Confidence 34444333333 489999999999876542 3322332 4589999987777764 35666655544
No 120
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=47.78 E-value=61 Score=28.11 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=45.4
Q ss_pred CChhhhhccccccccccccccC----CC-CHHHHHHHHHHhCCCEEEEEcC-CCchHHHHHHHHHHHHcCCCceEEEeec
Q 013518 144 LTPKVVNDIHKRGGTILGTSRG----GH-DTSKIVDSIQDRGINQVYIIGG-DGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (441)
Q Consensus 144 L~~~~v~~~~~~GGs~LGssR~----~~-~~~~i~~~l~~~~Id~LvvIGG-dgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (441)
+...+...|...|--+|-|.-. .+ ...+.++.|.+.++-+|.+--| +-. .--..+.+++.++++ |++.+|.
T Consensus 31 ~e~~d~~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP~~~i~~A~~~~l--Pli~ip~ 107 (123)
T PF07905_consen 31 MEAPDPSDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIPEEIIELADELGL--PLIEIPW 107 (123)
T ss_pred eecCCHHHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCCHHHHHHHHHcCC--CEEEeCC
Confidence 3344677775444444444322 22 3678899999999999999554 333 333556666766664 6999998
No 121
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=47.76 E-value=18 Score=31.45 Aligned_cols=42 Identities=31% Similarity=0.451 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCC---ceEEEeeccccCCCC
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLK---VAVAGIPKTIDNDIP 224 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~---i~vvgIPkTIDNDi~ 224 (441)
..|.++++|||||...+.. .+.+...+ +++.-||.==-||+.
T Consensus 49 ~~d~vvv~GGDGTi~~vvn---~l~~~~~~~~~~plgiiP~GTgNdfa 93 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLN---ALDKRELPLPEPPVAVLPLGTGNDLA 93 (124)
T ss_pred cCCEEEEEccccHHHHHHH---HHHhcccccCCCcEEEeCCCChhHHH
Confidence 4679999999999877643 22222322 679999987788885
No 122
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=47.27 E-value=2e+02 Score=26.77 Aligned_cols=83 Identities=12% Similarity=0.211 Sum_probs=48.6
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHHH
Q 013518 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (441)
Q Consensus 94 iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i~ 173 (441)
|||+...-..|-.+..+.++-+.+.. ++ .++. ++-+.+......+.+
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~-------------------------------~~~~~~~~~~~~~~i 48 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYE-NG-YQML-------------------------------LMNTNFSIEKEIEAL 48 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHH-CC-CEEE-------------------------------EEeCCCCHHHHHHHH
Confidence 67887766778777788887776642 22 2221 011111222334667
Q ss_pred HHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 174 ~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
+.|...++|++++.+.+.+.. +.+.+++.++ ++|.+
T Consensus 49 ~~l~~~~~dgii~~~~~~~~~----~~~~~~~~~i--pvv~~ 84 (259)
T cd01542 49 ELLARQKVDGIILLATTITDE----HREAIKKLNV--PVVVV 84 (259)
T ss_pred HHHHhcCCCEEEEeCCCCCHH----HHHHHhcCCC--CEEEE
Confidence 778889999999998765422 2233444454 45554
No 123
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=46.64 E-value=42 Score=34.94 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHH--------Hc-------CCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIR--------QR-------GLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~--------~~-------~~~i~vvgIPkTI 219 (441)
...++++.+++.+.|.+|-|||--+++.|..++-... ++ .-.+++|.||-|-
T Consensus 75 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTa 141 (382)
T PRK10624 75 VVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTA 141 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCC
Confidence 4678889999999999999999999998876542211 10 1236899999883
No 124
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=45.44 E-value=1.2e+02 Score=32.51 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHHHc---CCCceEE-EeeccccCCCC--CCCCCCChhhHHHH
Q 013518 181 INQVYIIGGDGTQKGAAVIYEEIRQR---GLKVAVA-GIPKTIDNDIP--VIDKSFGFDTAVEE 238 (441)
Q Consensus 181 Id~LvvIGGdgs~~~a~~L~~~~~~~---~~~i~vv-gIPkTIDNDi~--~td~s~GfdTA~~~ 238 (441)
+|.++++=|-||...-..+.+|.-.+ .+++||| ||=--+|.=|. --|...--.||+-.
T Consensus 188 ~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D~ti~D~vAd~ra~TPtaaae 251 (432)
T TIGR00237 188 CDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETDFTISDFVADLRAPTPSAAAE 251 (432)
T ss_pred CCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCCccHHHHhhhccCCCcHHHHH
Confidence 79999999999988765554442222 5666665 45555554331 12334444454433
No 125
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=45.32 E-value=1.6e+02 Score=31.11 Aligned_cols=68 Identities=24% Similarity=0.292 Sum_probs=37.7
Q ss_pred HHHHHHH---HhCCCEEEEEcCCCchHHHHHHHHHHHH---cCCCceEE-EeeccccCCCC--CCCCCCChhhHHHH
Q 013518 171 KIVDSIQ---DRGINQVYIIGGDGTQKGAAVIYEEIRQ---RGLKVAVA-GIPKTIDNDIP--VIDKSFGFDTAVEE 238 (441)
Q Consensus 171 ~i~~~l~---~~~Id~LvvIGGdgs~~~a~~L~~~~~~---~~~~i~vv-gIPkTIDNDi~--~td~s~GfdTA~~~ 238 (441)
.|++.|+ +.++|.++++=|=||...-..+.+|.-- ...++||| ||=--+|.=|. --|...--+||+-.
T Consensus 180 ~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D~tl~D~vAd~ra~TPtaaae 256 (438)
T PRK00286 180 SIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETDFTIADFVADLRAPTPTAAAE 256 (438)
T ss_pred HHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCCccHHHHhhhccCCChHHHHH
Confidence 4444444 3346999999999998766443333211 14556655 56665555442 23445555565544
No 126
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=45.29 E-value=47 Score=34.33 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc-----------------CCCceEEEeeccccCC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-----------------GLKVAVAGIPKTIDND 222 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~-----------------~~~i~vvgIPkTIDND 222 (441)
..+++++.+++.+.|.+|-|||--.++.|..++-..... .-.+++|.||-|--.+
T Consensus 69 ~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtg 140 (370)
T cd08192 69 AVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTG 140 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchh
Confidence 467888999999999999999999999887765432100 1136899999876543
No 127
>PRK05670 anthranilate synthase component II; Provisional
Probab=45.29 E-value=38 Score=31.44 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=29.0
Q ss_pred HHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH
Q 013518 176 IQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 236 (441)
Q Consensus 176 l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~ 236 (441)
++.++.|+||+-||.|+...+....+.+++..-++||.|| |+|++.-.
T Consensus 39 ~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGI-------------ClG~Qlla 86 (189)
T PRK05670 39 IEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGV-------------CLGHQAIG 86 (189)
T ss_pred HHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE-------------CHHHHHHH
Confidence 3556789999999999975543332222221223556665 88876444
No 128
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.15 E-value=2.7e+02 Score=26.20 Aligned_cols=88 Identities=23% Similarity=0.326 Sum_probs=51.0
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHHH
Q 013518 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (441)
Q Consensus 94 iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i~ 173 (441)
|||+...-..|-.+.+++++-..+.+ ++ .++.-+ -+....+...+.+
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~~i 48 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQ-YG-YTVLLC-------------------------------NTYRGGVSEADYV 48 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCChHHHHHHH
Confidence 67777766778888888888777653 22 232210 0111123355788
Q ss_pred HHHHHhCCCEEEEEcCCCchH-HHHHHHHHHHHcCCCceEEEee
Q 013518 174 DSIQDRGINQVYIIGGDGTQK-GAAVIYEEIRQRGLKVAVAGIP 216 (441)
Q Consensus 174 ~~l~~~~Id~LvvIGGdgs~~-~a~~L~~~~~~~~~~i~vvgIP 216 (441)
+.|...++|++++.+..-... ......+.+.+++ +|||.+=
T Consensus 49 ~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~--ipvV~i~ 90 (273)
T cd06292 49 EDLLARGVRGVVFISSLHADTHADHSHYERLAERG--LPVVLVN 90 (273)
T ss_pred HHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCC--CCEEEEc
Confidence 999999999999998543221 1112223344445 4577653
No 129
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=45.01 E-value=56 Score=33.79 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHh---CCCEEEEEcCCCchHHHHHHHHHHHHc-------------CCCceEEEeeccccC
Q 013518 168 DTSKIVDSIQDR---GINQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTIDN 221 (441)
Q Consensus 168 ~~~~i~~~l~~~---~Id~LvvIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTIDN 221 (441)
..+++++.++++ ++|.++-|||--+++.|..++-....- .-.+++|.||-|--.
T Consensus 66 ~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGT 135 (347)
T cd08184 66 QIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGT 135 (347)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCcc
Confidence 467888888888 999999999999999988776432110 113578999987544
No 130
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=44.42 E-value=53 Score=34.08 Aligned_cols=101 Identities=12% Similarity=0.108 Sum_probs=52.1
Q ss_pred ccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC---CeeeCChhhhhcccccccccccccc-CCCCHHHHH
Q 013518 98 TCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK---NTINLTPKVVNDIHKRGGTILGTSR-GGHDTSKIV 173 (441)
Q Consensus 98 ~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~---~~~~L~~~~v~~~~~~GGs~LGssR-~~~~~~~i~ 173 (441)
..||...=+..+ ++++.+.+.....+++|+-++ .+-.. ...+++...+.++.. .|..-+ -..-+.++.
T Consensus 11 ~aGgtsGhi~pa--al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~~~~~~~l~v~G~~~----~l~~~~~~~~~~~~~~ 82 (385)
T TIGR00215 11 VAGEASGDILGA--GLRQQLKEHYPNARFIGVAGP--RMAAEGCEVLYSMEELSVMGLRE----VLGRLGRLLKIRKEVV 82 (385)
T ss_pred EeCCccHHHHHH--HHHHHHHhcCCCcEEEEEccH--HHHhCcCccccChHHhhhccHHH----HHHHHHHHHHHHHHHH
Confidence 345544447766 677777654444577776532 11111 113333333444321 121111 012345788
Q ss_pred HHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCC
Q 013518 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209 (441)
Q Consensus 174 ~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~ 209 (441)
+.+++.+.|.++.+||-+ +.- .++..++..|++
T Consensus 83 ~~l~~~kPd~vi~~g~~~-~~~--~~a~aa~~~gip 115 (385)
T TIGR00215 83 QLAKQAKPDLLVGIDAPD-FNL--TKELKKKDPGIK 115 (385)
T ss_pred HHHHhcCCCEEEEeCCCC-ccH--HHHHHHhhCCCC
Confidence 999999999999999844 321 233333444654
No 131
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=44.31 E-value=3.5e+02 Score=29.09 Aligned_cols=140 Identities=17% Similarity=0.171 Sum_probs=93.7
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (441)
-++||.-+ ||-==.||+++.+.+... + .-+ +++-|.++|+.. ||- |.=++.|+..
T Consensus 15 ~~~gI~sV---Csahp~VieAAl~~a~~~-~-~pv--------------LiEAT~NQVnq~---GGY---TGmtP~dF~~ 69 (426)
T PRK15458 15 KTNGIYAV---CSAHPLVLEAAIRYALAN-D-SPL--------------LIEATSNQVDQF---GGY---TGMTPADFRG 69 (426)
T ss_pred CCceEEEe---cCCCHHHHHHHHHHHhhc-C-CcE--------------EEEecccccccc---CCc---CCCCHHHHHH
Confidence 35677775 554447899988766431 1 122 467888888876 774 5555556544
Q ss_pred -HHHHHHHhCCCE-EEEEcCCC-------------chHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH
Q 013518 172 -IVDSIQDRGINQ-VYIIGGDG-------------TQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 236 (441)
Q Consensus 172 -i~~~l~~~~Id~-LvvIGGdg-------------s~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~ 236 (441)
+.+.-++.+++. .+++|||- +|..|..+....-+.||. -|+|=.|++ ..+....+.-++-+
T Consensus 70 ~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--cagdp~pL~d~~vA 145 (426)
T PRK15458 70 FVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFK--KIHLDCSMS--CADDPIPLTDEIVA 145 (426)
T ss_pred HHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--CCCCCCCCChHHHH
Confidence 445567788988 99999973 466666666655566886 789988888 55555677778989
Q ss_pred HHHHHHHHHHHHhhh---cCCceEEEE
Q 013518 237 EEAQRAINAAHVEAE---SIENGIGVV 260 (441)
Q Consensus 237 ~~~~~~i~~i~~~a~---s~~~rv~iV 260 (441)
+.+++.|...-.++. ....-+++|
T Consensus 146 ~Raa~L~~~aE~~a~~~~~~~~~vYvI 172 (426)
T PRK15458 146 ERAARLAKIAEETCREHFGESDLVYVI 172 (426)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 998888875554442 223347777
No 132
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=44.21 E-value=22 Score=38.58 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHhCC---CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHH
Q 013518 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (441)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~ 238 (441)
..+++++.|.++++ |.++.|||--....|--++.-. .+| |+.|.||-|+- ...|-|+|-=||+|.
T Consensus 222 ~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y-~RG--i~~i~vPTTll---a~vDssiggK~~vn~ 289 (488)
T PRK13951 222 HVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTF-KRG--VGLSFYPTTLL---AQVDASVGGKNAIDF 289 (488)
T ss_pred HHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHH-hcC--CCeEecCccHH---HHHhcCCCCCeeeeC
Confidence 36789999999999 9999999988877776665432 357 56999999985 567889998888876
No 133
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=43.97 E-value=45 Score=34.58 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHH----------Hc-------CCCceEEEeecc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIR----------QR-------GLKVAVAGIPKT 218 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~----------~~-------~~~i~vvgIPkT 218 (441)
...++++.+++.+.|.+|-|||--.++.|..++-... .. +-.+++|.||-|
T Consensus 63 ~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 130 (374)
T cd08183 63 LVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTT 130 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCC
Confidence 4678889999999999999999999998877653221 00 124679999987
No 134
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=43.16 E-value=51 Score=34.28 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH-------------cCCCceEEEeeccccCC
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTIDND 222 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTIDND 222 (441)
+..+++++.+++.+.|.+|-|||--.+..|..++-.... ....+|+|.||-|--..
T Consensus 73 ~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTG 141 (382)
T cd08187 73 ETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATG 141 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchh
Confidence 346788899999999999999999889988766432111 01247899999876543
No 135
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=42.85 E-value=2.5e+02 Score=25.23 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCC---CCCCCCCCChhhHHHHHHHHHH
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND---IPVIDKSFGFDTAVEEAQRAIN 244 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND---i~~td~s~GfdTA~~~~~~~i~ 244 (441)
+..+.++.+...++|+++..+.+..... +.+.+.+.+ +++|.+=.+.+.. -...-..+.+..+...+++.+.
T Consensus 46 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~---~~~~~~~~~--ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 120 (269)
T cd01391 46 RALEALRDLIQQGVDGIIGPPSSSSALA---VVELAAAAG--IPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYLA 120 (269)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCHHHHH---HHHHHHHcC--CcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHHH
Confidence 4566777788889999988877655432 334444444 5677765544321 1112234444555555555443
Q ss_pred HHHHhhhcCCceEEEEE
Q 013518 245 AAHVEAESIENGIGVVK 261 (441)
Q Consensus 245 ~i~~~a~s~~~rv~iVE 261 (441)
... ++++.++=
T Consensus 121 ~~~------~~~i~~i~ 131 (269)
T cd01391 121 EKG------WKRVALIY 131 (269)
T ss_pred HhC------CceEEEEe
Confidence 322 35677664
No 136
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=42.81 E-value=3.8e+02 Score=27.26 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=91.5
Q ss_pred EEccCCCCcchh-HHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccc-ccccccC-----CCC
Q 013518 96 IVTCGGLCPGLN-TVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGT-ILGTSRG-----GHD 168 (441)
Q Consensus 96 Il~sGG~apGmN-a~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs-~LGssR~-----~~~ 168 (441)
|+.|||+.=-++ .-+..+++.+.. .+ .+--++-+-+..+.. ...++.+.++.+...|=. .+++.-. ...
T Consensus 140 VilSGGDPl~~~~~~L~~ll~~l~~-i~--~v~~iri~Tr~~v~~-p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 140 VILTGGDPLVLSPRRLGDIMARLAA-ID--HVKIVRFHTRVPVAD-PARVTPALIAALKTSGKTVYVALHANHARELTAE 215 (321)
T ss_pred EEEeCCCcccCCHHHHHHHHHHHHh-CC--CccEEEEeCCCcccC-hhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHH
Confidence 677899876554 568888887754 33 232233344443221 233566655555544411 2433221 134
Q ss_pred HHHHHHHHHHhCCCEEE---EE-cCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHH
Q 013518 169 TSKIVDSIQDRGINQVY---II-GGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 244 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~Lv---vI-GGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~ 244 (441)
..+.++.|++.||..+. ++ |=|++......|.+.+.+.|...-.+.... .++|+ --|.+......+.+.
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~----p~~g~---~~f~~~~~~~~~i~~ 288 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLD----LAPGT---AHFRVTIEEGQALVR 288 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecC----CCCCc---ccccCcHHHHHHHHH
Confidence 56788889999987643 33 556777777778877776665422222221 22232 345566777777777
Q ss_pred HHHHhhhcCCceEEEEEecCCC
Q 013518 245 AAHVEAESIENGIGVVKLMGRY 266 (441)
Q Consensus 245 ~i~~~a~s~~~rv~iVEvMGr~ 266 (441)
.++...++.-.--+++|..|..
T Consensus 289 ~l~~~~~g~~~p~~v~~~~~~~ 310 (321)
T TIGR03822 289 ALRGRISGLAQPTYVLDIPGGH 310 (321)
T ss_pred HHHHhCCCCcceeEEEeCCCCC
Confidence 7766655543446889988864
No 137
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=42.26 E-value=42 Score=35.18 Aligned_cols=64 Identities=23% Similarity=0.393 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCC---EEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHH
Q 013518 169 TSKIVDSIQDRGIN---QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (441)
Q Consensus 169 ~~~i~~~l~~~~Id---~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~ 238 (441)
..++.+.+.+++.+ .++.|||==....|..++-. ..+| +++|.||-| =+..+|.++|--|++|.
T Consensus 85 v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~-~~rG--ip~I~IPTT---lla~vDs~~g~k~~vn~ 151 (369)
T cd08198 85 VEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAAT-AHRG--VRLIRIPTT---VLAQNDSGVGVKNGINA 151 (369)
T ss_pred HHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHH-hcCC--CCEEEECCC---chhhhCCCeeeeecccC
Confidence 56888999999998 99999998878777666543 2345 679999999 22445666666666654
No 138
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=42.09 E-value=54 Score=34.57 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH-------------cCCCceEEEeecc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKT 218 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkT 218 (441)
..++.++.+++.+.|.+|-+||=-++..|..++-.... ...+.++|.||-|
T Consensus 74 ~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTT 137 (377)
T COG1454 74 TVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTT 137 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCC
Confidence 36788899999999999999999999988766533221 1122678888876
No 139
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=41.70 E-value=34 Score=35.82 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI 226 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t 226 (441)
.+.+++...+.+.+.|.++=|||--+++.|..++.. +++++|.||-+=++|=+.+
T Consensus 71 ~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~-----~~~pfIsvPT~AS~Da~~S 125 (360)
T COG0371 71 EEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYR-----LGLPFISVPTIASTDAITS 125 (360)
T ss_pred HHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHH-----cCCCEEEecCccccccccC
Confidence 467788888888899999999999999999888753 3567999999999886544
No 140
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=41.53 E-value=58 Score=33.07 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHh-CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC
Q 013518 167 HDTSKIVDSIQDR-GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI 226 (441)
Q Consensus 167 ~~~~~i~~~l~~~-~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t 226 (441)
...+++.+.+++. +.|.+|-|||--.++.|..++.. ++ +++|.||-|..+|-..+
T Consensus 61 ~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~---~~--~p~i~vPTt~~tgs~~s 116 (331)
T cd08174 61 SDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFL---RG--IPLSVPTTNLNDDGIAS 116 (331)
T ss_pred cCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhh---cC--CCEEEecCccccCcccc
Confidence 4567777777777 59999999999889888877652 34 67999999998765443
No 141
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=41.52 E-value=2.6e+02 Score=26.31 Aligned_cols=44 Identities=14% Similarity=0.281 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEee
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (441)
..+.++.|.+.++|++++.+.+.+. ...+.+++.+++ +|+|.+=
T Consensus 45 ~~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~l~~~~--iPvv~~~ 88 (272)
T cd06301 45 QLSQVENFIAQGVDAIIVVPVDTAA--TAPIVKAANAAG--IPLVYVN 88 (272)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhh--hHHHHHHHHHCC--CeEEEec
Confidence 4467778888999999998866432 123334444445 5677653
No 142
>PRK05637 anthranilate synthase component II; Provisional
Probab=40.58 E-value=64 Score=30.86 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=34.4
Q ss_pred HHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHH
Q 013518 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (441)
Q Consensus 174 ~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~ 238 (441)
+.+++.+.|++|+-||-|+...+....+.++...-++||.|| |+|++.-...
T Consensus 38 ~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGI-------------ClG~Qlla~a 89 (208)
T PRK05637 38 EEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGI-------------CLGFQALLEH 89 (208)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEE-------------cHHHHHHHHH
Confidence 445577899999999999997764433333222224667766 8888765544
No 143
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=40.08 E-value=3.8e+02 Score=26.44 Aligned_cols=69 Identities=6% Similarity=0.159 Sum_probs=44.0
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (441)
..||++...-..+=...+++++-+.+.+ ++ .+++-+. +........+
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 106 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCYQ-KG-YTLILCN-------------------------------AWNNLEKQRA 106 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHHHH
Confidence 4899998776777788888888776643 33 2322110 1111122346
Q ss_pred HHHHHHHhCCCEEEEEcCCCch
Q 013518 172 IVDSIQDRGINQVYIIGGDGTQ 193 (441)
Q Consensus 172 i~~~l~~~~Id~LvvIGGdgs~ 193 (441)
.++.|...++|++++.+.+.+.
T Consensus 107 ~i~~l~~~~vdgiii~~~~~~~ 128 (341)
T PRK10703 107 YLSMLAQKRVDGLLVMCSEYPE 128 (341)
T ss_pred HHHHHHHcCCCEEEEecCCCCH
Confidence 6778889999999999876443
No 144
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=40.03 E-value=47 Score=30.84 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHH---hCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeecc
Q 013518 166 GHDTSKIVDSIQD---RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (441)
Q Consensus 166 ~~~~~~i~~~l~~---~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (441)
..|..-+++.++- .++|.++++-||+-|.- |.+.++++|..+-++|.|+.
T Consensus 88 ~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~---Lv~~lre~G~~V~v~g~~~~ 140 (160)
T TIGR00288 88 DVDVRMAVEAMELIYNPNIDAVALVTRDADFLP---VINKAKENGKETIVIGAEPG 140 (160)
T ss_pred cccHHHHHHHHHHhccCCCCEEEEEeccHhHHH---HHHHHHHCCCEEEEEeCCCC
Confidence 4677777777765 68999999999999974 55666677988777777653
No 145
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=39.85 E-value=72 Score=33.13 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH-------cCC------CceEEEeecccc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------RGL------KVAVAGIPKTID 220 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~-------~~~------~i~vvgIPkTID 220 (441)
...++++.+++.+.|.+|-|||--.++.|..++-.... .+. .+++|.||-|--
T Consensus 73 ~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~g 138 (377)
T cd08188 73 EVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAG 138 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCc
Confidence 35677888999999999999999999988766432211 011 367999998753
No 146
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=39.69 E-value=31 Score=26.38 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHH
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAA 197 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~ 197 (441)
..+..+.|++|+|| |+-||+-|+..|.
T Consensus 12 ~p~~a~vf~~~gID--fCCgG~~~L~eA~ 38 (56)
T PF04405_consen 12 DPRAARVFRKYGID--FCCGGNRSLEEAC 38 (56)
T ss_pred ChHHHHHHHHcCCc--ccCCCCchHHHHH
Confidence 34678899999999 6899999987554
No 147
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=39.46 E-value=1.7e+02 Score=27.38 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCC-CCCChh--hHHHHHHHHHHH
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFD--TAVEEAQRAINA 245 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td-~s~Gfd--TA~~~~~~~i~~ 245 (441)
..++++.+...++|++++.+.+.+-. +.+++++.+ +++|.+ |++.+... .++++| .+...+++.+.+
T Consensus 44 ~~~~i~~l~~~~vdgiii~~~~~~~~----~~~~l~~~~--ipvV~~----~~~~~~~~~~~v~~d~~~~~~~~~~~l~~ 113 (268)
T cd06298 44 ELKVLNNLLAKQVDGIIFMGGKISEE----HREEFKRSP--TPVVLA----GSVDEDNELPSVNIDYKKAAFEATELLIK 113 (268)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCcHH----HHHHHhcCC--CCEEEE----ccccCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 34667778889999999998654432 233343444 557665 33322222 234443 455555544432
Q ss_pred HHHhhhcCCceEEEEE
Q 013518 246 AHVEAESIENGIGVVK 261 (441)
Q Consensus 246 i~~~a~s~~~rv~iVE 261 (441)
.. ++++.++-
T Consensus 114 -----~g-~~~i~~l~ 123 (268)
T cd06298 114 -----NG-HKKIAFIS 123 (268)
T ss_pred -----cC-CceEEEEe
Confidence 24 45677774
No 148
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=39.14 E-value=69 Score=33.01 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHhC--CCEEEEEcCCCchHHHHHHHHHHHHc-----------------CCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRG--INQVYIIGGDGTQKGAAVIYEEIRQR-----------------GLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~--Id~LvvIGGdgs~~~a~~L~~~~~~~-----------------~~~i~vvgIPkTI 219 (441)
..+++++.+++.+ .|.++-|||--.++.|..++-..... .-.+|+|.||-|-
T Consensus 66 ~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTa 136 (355)
T TIGR03405 66 QLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTA 136 (355)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCC
Confidence 4677888888887 99999999999999887664321110 1246899999873
No 149
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=38.75 E-value=62 Score=28.37 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEee
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (441)
.+++.+.++++|.++++.||+-|..+. +.++++|..+.+++.+
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~i---~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPLV---ERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHHH---HHHHHcCCEEEEEccC
Confidence 345556667899999999999987654 4445568887777776
No 150
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=38.75 E-value=1.8e+02 Score=28.81 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeecc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (441)
..++.++.+++.++|++++. |=.+..+..+.+.++++|+..-...-|.|
T Consensus 105 G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 57889999999999999995 66677888888888888987544445544
No 151
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=38.71 E-value=52 Score=30.69 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=31.6
Q ss_pred HHHHHhCCCEEEEEcCCCchHHHH---HHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHH
Q 013518 174 DSIQDRGINQVYIIGGDGTQKGAA---VIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (441)
Q Consensus 174 ~~l~~~~Id~LvvIGGdgs~~~a~---~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~ 238 (441)
+.+.+++.|++|+-||.|+..... .+.+++ .-++||.|| |+|++--...
T Consensus 37 ~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~---~~~~PvLGI-------------C~G~Qll~~~ 88 (188)
T TIGR00566 37 QEIEALLPLLIVISPGPCTPNEAGISLEAIRHF---AGKLPILGV-------------CLGHQAMGQA 88 (188)
T ss_pred HHHHhcCCCEEEEcCCCCChhhcchhHHHHHHh---ccCCCEEEE-------------CHHHHHHHHH
Confidence 445677899999999999875422 233332 224667776 8887755433
No 152
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=38.60 E-value=65 Score=33.58 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH------c-------CCCceEEEeeccc
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ------R-------GLKVAVAGIPKTI 219 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~------~-------~~~i~vvgIPkTI 219 (441)
..+.++.+++.+.|.+|-|||--.++.|..++-.... + +-.+++|.||-|-
T Consensus 68 v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 131 (386)
T cd08191 68 LCDAASAAARAGPDVIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTA 131 (386)
T ss_pred HHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCC
Confidence 5567788889999999999999999998877643311 0 1147899999875
No 153
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=37.87 E-value=3e+02 Score=25.64 Aligned_cols=121 Identities=12% Similarity=0.141 Sum_probs=66.0
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHH
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (441)
.||++...-..|-.+..+.++.+.+.+ ++ .+++-+ -+..........
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~~ 47 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASA-AG-YSTIIG-------------------------------NSDENPETENRY 47 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------eCCCCHHHHHHH
Confidence 377887666678888888888877643 33 233211 011111224467
Q ss_pred HHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC-CCCCChhhHHHHHHHHHHHHHHhhh
Q 013518 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDTAVEEAQRAINAAHVEAE 251 (441)
Q Consensus 173 ~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t-d~s~GfdTA~~~~~~~i~~i~~~a~ 251 (441)
++.+...++|++++.+.+.... ..+++++++ +|+|. +|++.+.. -.+++.|-. .....+++.+.. .
T Consensus 48 ~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--ipvV~----~~~~~~~~~~~~v~~d~~-~~~~~~~~~l~~--~ 114 (265)
T cd06299 48 LDNLLSQRVDGIIVVPHEQSAE----QLEDLLKRG--IPVVF----VDREITGSPIPFVTSDPQ-PGMTEAVSLLVA--L 114 (265)
T ss_pred HHHHHhcCCCEEEEcCCCCChH----HHHHHHhCC--CCEEE----EecccCCCCCCEEEECcH-HHHHHHHHHHHH--c
Confidence 8889999999999998765532 134555555 45664 34444321 124454432 122333444432 2
Q ss_pred cCCceEEEE
Q 013518 252 SIENGIGVV 260 (441)
Q Consensus 252 s~~~rv~iV 260 (441)
++ ++|.++
T Consensus 115 g~-~~I~~i 122 (265)
T cd06299 115 GH-KKIGYI 122 (265)
T ss_pred CC-CcEEEE
Confidence 33 456665
No 154
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=37.65 E-value=1.1e+02 Score=30.21 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=59.6
Q ss_pred CcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC---CCCHHHHHHHHHHh
Q 013518 103 CPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG---GHDTSKIVDSIQDR 179 (441)
Q Consensus 103 apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~---~~~~~~i~~~l~~~ 179 (441)
+|....-.+.+++++.+..+..++.-+...+. +. ..+.....+.+...|+.+.++.+. ..|+...+..|+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~--~g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~ 189 (340)
T cd06349 115 STSQAIEAPLLADYAVKDLGFKKVAILSVNTD--WG---RTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDA 189 (340)
T ss_pred cCCcHHHHHHHHHHHHHHcCCcEEEEEecCCh--Hh---HHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhc
Confidence 34444445566666543344456555543322 10 111111222334557777765543 35788899999999
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEE
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (441)
+-|.+++.|..+ .+..+.+.+++.|++.++++
T Consensus 190 ~~d~v~~~~~~~---~~~~~~~~~~~~g~~~~~~~ 221 (340)
T cd06349 190 NPDAIILISYYN---DGAPIARQARAVGLDIPVVA 221 (340)
T ss_pred CCCEEEEccccc---hHHHHHHHHHHcCCCCcEEc
Confidence 999988877443 23446677777788777664
No 155
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=37.63 E-value=59 Score=33.18 Aligned_cols=49 Identities=10% Similarity=0.117 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (441)
..+++++.+++ +.|.++-|||--.+..|..++ +. ++ +++|.||-|..+|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA-~~--~g--ip~I~VPTT~~~~ 117 (332)
T cd08549 69 ELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVS-FK--VG--KPFISVPTAPSMD 117 (332)
T ss_pred HHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHH-HH--cC--CCEEEeCCCcccC
Confidence 35677788888 999999999998888888776 22 34 6799999998664
No 156
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=37.48 E-value=3e+02 Score=25.25 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=25.1
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccccc
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYR 134 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~ 134 (441)
..+|.++ ||. |+ ++..+...+.+.|++.++.|.++||-
T Consensus 48 ~~~ifll--G~~-~~---~~~~~~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 48 GKRIFLL--GGS-EE---VLEKAAANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred CCeEEEE--eCC-HH---HHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3465555 444 44 44444555666799999999999976
No 157
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=36.81 E-value=4.1e+02 Score=25.90 Aligned_cols=70 Identities=7% Similarity=0.187 Sum_probs=44.3
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (441)
...||++...-..|-.+.++.++-+.+.+ ++ .+++-+ -+........
T Consensus 56 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~ 102 (327)
T PRK10423 56 TRTIGMLITASTNPFYSELVRGVERSCFE-RG-YSLVLC-------------------------------NTEGDEQRMN 102 (327)
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------eCCCCHHHHH
Confidence 35899988665667888888888877753 22 222210 0101112234
Q ss_pred HHHHHHHHhCCCEEEEEcCCCch
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQ 193 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~ 193 (441)
+.++.|...++|++++.+.+.+.
T Consensus 103 ~~~~~l~~~~vdGiI~~~~~~~~ 125 (327)
T PRK10423 103 RNLETLMQKRVDGLLLLCTETHQ 125 (327)
T ss_pred HHHHHHHHcCCCEEEEeCCCcch
Confidence 67778888999999999876543
No 158
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=36.80 E-value=1e+02 Score=29.24 Aligned_cols=90 Identities=21% Similarity=0.367 Sum_probs=58.1
Q ss_pred EEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccccccccc---------CCeeeCChhhhhccccccccccccccC-
Q 013518 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---------KNTINLTPKVVNDIHKRGGTILGTSRG- 165 (441)
Q Consensus 96 Il~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~---------~~~~~L~~~~v~~~~~~GGs~LGssR~- 165 (441)
++.+||+.+-.... +.+. .....++++-.|..=|++ ||+--++++..+.+...|-.+.-....
T Consensus 2 ~Ii~~g~~~~~~~~-----~~~~--~~~~~~i~aDgGa~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~K 74 (208)
T cd07995 2 LILLGGPLPDSPLL-----LKLW--KKADLIIAADGGANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEK 74 (208)
T ss_pred EEEECCcCCcchhH-----HHhh--ccCCEEEEEChHHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCCC
Confidence 56778887744433 2222 233478899999866654 455555555555554443223332331
Q ss_pred -CCCHHHHHHHHHHhCCCEEEEEcCCCc
Q 013518 166 -GHDTSKIVDSIQDRGINQVYIIGGDGT 192 (441)
Q Consensus 166 -~~~~~~i~~~l~~~~Id~LvvIGGdgs 192 (441)
.-|++++++.+.+++.+-++++|+.|.
T Consensus 75 D~TD~e~Al~~~~~~~~~~i~i~Ga~Gg 102 (208)
T cd07995 75 DFTDFEKALKLALERGADEIVILGATGG 102 (208)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEccCCC
Confidence 247899999999999999999999998
No 159
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=36.69 E-value=5.7e+02 Score=27.50 Aligned_cols=140 Identities=19% Similarity=0.225 Sum_probs=90.5
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (441)
-++||.-+ ||-==.||+++.+.+... + .-| +++-|.++|+.. ||- |.=++.|+..
T Consensus 11 ~~~gI~sV---Csahp~VieAAl~~a~~~-~-~pv--------------LiEAT~NQVnq~---GGY---TGmtP~dF~~ 65 (420)
T TIGR02810 11 EPRGIYSV---CSAHPLVLEAAIRRARAS-G-TPV--------------LIEATSNQVNQF---GGY---TGMTPADFRD 65 (420)
T ss_pred CCCeEEEE---CCCCHHHHHHHHHHHhhc-C-CcE--------------EEEecccccccc---CCc---CCCCHHHHHH
Confidence 35677775 554447899988766431 1 122 467888888876 774 5555556544
Q ss_pred -HHHHHHHhCCCE-EEEEcCCC-------------chHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH
Q 013518 172 -IVDSIQDRGINQ-VYIIGGDG-------------TQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 236 (441)
Q Consensus 172 -i~~~l~~~~Id~-LvvIGGdg-------------s~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~ 236 (441)
+.+.-++.+++. .+++|||- +|..|..+....-+.||. -|+|=.|++ ..+-..-+.-++-+
T Consensus 66 ~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vA 141 (420)
T TIGR02810 66 FVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFT--KIHLDASMG--CAGDPAPLDDATVA 141 (420)
T ss_pred HHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHH
Confidence 445567788998 99999983 355555565555556886 789988888 22222455668888
Q ss_pred HHHHHHHHHHHHhhh---cCCceEEEE
Q 013518 237 EEAQRAINAAHVEAE---SIENGIGVV 260 (441)
Q Consensus 237 ~~~~~~i~~i~~~a~---s~~~rv~iV 260 (441)
+.+++.|...-.++. ....-+++|
T Consensus 142 eRaa~L~~~aE~~~~~~~~~~~~vYvI 168 (420)
T TIGR02810 142 ERAARLCAVAEAAATDRRGETKPVYVI 168 (420)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEe
Confidence 888888875554443 333347777
No 160
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=36.67 E-value=71 Score=33.72 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHH
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY 200 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~ 200 (441)
...++++.+++.++|.+|-|||--.+..|..++
T Consensus 68 ~v~~~~~~~~~~~~D~IIaiGGGSviD~AKaia 100 (414)
T cd08190 68 SFKDAIAFAKKGQFDAFVAVGGGSVIDTAKAAN 100 (414)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 467889999999999999999999999887665
No 161
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=36.59 E-value=3.6e+02 Score=25.23 Aligned_cols=126 Identities=12% Similarity=0.100 Sum_probs=63.8
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHH
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (441)
+||++...-.-|=....+.++-+.+.+ ++ .++.-+ -+........+.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~~ 47 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEA-LG-GDLRVY-------------------------------DAGGDDAKQADQ 47 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------CCCCCHHHHHHH
Confidence 577777665667777778887776643 22 222211 011111223456
Q ss_pred HHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC-CCCCChhhHHHHHHHHHHHHHHhhh
Q 013518 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDTAVEEAQRAINAAHVEAE 251 (441)
Q Consensus 173 ~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t-d~s~GfdTA~~~~~~~i~~i~~~a~ 251 (441)
++.+...++|++++..++.... ..+.+++.+++ +++|.+ |++.+.. -.+++.|-- +....+.+.+.....
T Consensus 48 l~~~~~~~vdgii~~~~~~~~~--~~~i~~~~~~~--ipvV~~----~~~~~~~~~~~V~~d~~-~~g~~~~~~l~~~~~ 118 (273)
T cd06305 48 IDQAIAQKVDAIIIQHGRAEVL--KPWVKRALDAG--IPVVAF----DVDSDNPKVNNTTQDDY-SLARLSLDQLVKDLG 118 (273)
T ss_pred HHHHHHcCCCEEEEecCChhhh--HHHHHHHHHcC--CCEEEe----cCCCCCCccceeeechH-HHHHHHHHHHHHHhC
Confidence 6777778999999988764321 22234445555 456655 4333221 124554321 222333333333333
Q ss_pred cCCceEEEEE
Q 013518 252 SIENGIGVVK 261 (441)
Q Consensus 252 s~~~rv~iVE 261 (441)
.+ ++|.++-
T Consensus 119 g~-~~i~~i~ 127 (273)
T cd06305 119 GK-GNVGYVN 127 (273)
T ss_pred CC-CCEEEEE
Confidence 43 4677774
No 162
>CHL00101 trpG anthranilate synthase component 2
Probab=36.50 E-value=53 Score=30.68 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.1
Q ss_pred HHHHhCCCEEEEEcCCCchHH
Q 013518 175 SIQDRGINQVYIIGGDGTQKG 195 (441)
Q Consensus 175 ~l~~~~Id~LvvIGGdgs~~~ 195 (441)
.+.+.++|++|+.||.++...
T Consensus 38 ~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 38 KIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred HHhhCCCCEEEECCCCCChHH
Confidence 345678999999999998754
No 163
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.15 E-value=2.5e+02 Score=26.89 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=44.0
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHH
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (441)
+||++...-..|.....+.++.+.+.+ ++ .+++ + .-+........++
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-y~~~---------~----------------------~~~~~~~~~~~~~ 48 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKA-IG-WNLR---------I----------------------LDGRGSEAGQAAA 48 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHH-cC-cEEE---------E----------------------ECCCCCHHHHHHH
Confidence 688888777788888899998887743 22 2221 0 0011111234578
Q ss_pred HHHHHHhCCCEEEEEcCCC
Q 013518 173 VDSIQDRGINQVYIIGGDG 191 (441)
Q Consensus 173 ~~~l~~~~Id~LvvIGGdg 191 (441)
++.|..+++|++++.+.+.
T Consensus 49 i~~l~~~~vdgiil~~~~~ 67 (280)
T cd06315 49 LNQAIALKPDGIVLGGVDA 67 (280)
T ss_pred HHHHHHcCCCEEEEcCCCH
Confidence 8889999999999998653
No 164
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=36.11 E-value=41 Score=25.55 Aligned_cols=50 Identities=10% Similarity=0.303 Sum_probs=34.8
Q ss_pred cccccCCCCHHHHHHHHHHhCCCE------------EEEEcCCCchHHHHHHHHHHH-HcCCC
Q 013518 160 LGTSRGGHDTSKIVDSIQDRGINQ------------VYIIGGDGTQKGAAVIYEEIR-QRGLK 209 (441)
Q Consensus 160 LGssR~~~~~~~i~~~l~~~~Id~------------LvvIGGdgs~~~a~~L~~~~~-~~~~~ 209 (441)
+|+-+...+.++.++.|++.+++. -|.+|.+.+...|..+.+.++ ..+.+
T Consensus 9 v~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~ 71 (76)
T PF05036_consen 9 VGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPD 71 (76)
T ss_dssp EEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS-
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCC
Confidence 455555556778888899888874 678899999998888888877 45554
No 165
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=35.76 E-value=57 Score=33.40 Aligned_cols=45 Identities=4% Similarity=0.226 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeecc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (441)
..+++++.+++ +.|.++-|||--.++.|..++.. + .+|+|.||-|
T Consensus 69 ~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~---~--~~p~i~IPTT 113 (348)
T cd08175 69 AVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK---T--GIPYISVPTA 113 (348)
T ss_pred HHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh---c--CCCEEEecCc
Confidence 35567777777 99999999999999988877632 2 4679999999
No 166
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=35.71 E-value=3.8e+02 Score=27.47 Aligned_cols=151 Identities=13% Similarity=0.167 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHH---HHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHH
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAA---VIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 245 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~---~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~ 245 (441)
.+.+.+.+++++=+.++++++--+-.... .+.+++++. ..++++.+.. +... -+++-|+++|++.+.+.+..
T Consensus 69 ~~~i~~~~~~~~p~~i~v~~tc~~~liGdDi~~v~~~~~~~-~~~~vv~~~~---~gf~-~~~~~G~~~a~~~~~~~~~~ 143 (399)
T cd00316 69 LEAIINELKRYKPKVIFVYTTCTTELIGDDIEAVAKEASKE-IGIPVVPAST---PGFR-GSQSAGYDAAVKAIIDHLVG 143 (399)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhhhhccCHHHHHHHHHHh-hCCceEEeeC---CCCc-ccHHHHHHHHHHHHHHHHhc
Confidence 56778888888889999998665533322 233333322 3455665544 2222 35677999999888876643
Q ss_pred HHHhhhcCCceEEEEEecCCCccHHH-HHHhhccCCCCEEEcCCCCCChhhHHHHHhhhhhhccCCcchhh-hHHHHHHH
Q 013518 246 AHVEAESIENGIGVVKLMGRYCGFIA-MYATLGSRDVDCCLIPESPFYLEGEESLQSMNQQDASGNKLLQD-VGLWISHK 323 (441)
Q Consensus 246 i~~~a~s~~~rv~iVEvMGr~~G~LA-~~~aLA~~~ad~iliPE~~~~l~~~e~l~~~~~~d~~G~~~l~~-i~~~l~~~ 323 (441)
-.......++.|-++=..--..+.+. +.--|..-|.++..+|-..-++++++.+. ++.-|..+.. .+..+++.
T Consensus 144 ~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~-----~A~~nlv~~~~~g~~~a~~ 218 (399)
T cd00316 144 TAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRELG-----NAKLNLVLCRESGLYLARY 218 (399)
T ss_pred ccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhc-----cCcEEEEecHhHHHHHHHH
Confidence 11011222344544433222111211 12222323577777766555566552221 2233333333 46666777
Q ss_pred HHHHhc
Q 013518 324 IKDHFA 329 (441)
Q Consensus 324 I~~~~~ 329 (441)
++++++
T Consensus 219 l~~~~g 224 (399)
T cd00316 219 LEEKYG 224 (399)
T ss_pred HHHHhC
Confidence 766654
No 167
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=35.63 E-value=4.9e+02 Score=26.43 Aligned_cols=95 Identities=12% Similarity=0.062 Sum_probs=57.9
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-CC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HD 168 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~ 168 (441)
...+|+++......|=.+.+..++-+.+.+ ++ .++.- . +.+... ..
T Consensus 22 ~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~-~G-~~v~~--~-----------------------------~~~~~d~~~ 68 (336)
T PRK15408 22 AAERIAFIPKLVGVGFFTSGGNGAKEAGKE-LG-VDVTY--D-----------------------------GPTEPSVSG 68 (336)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHHHHHH-hC-CEEEE--E-----------------------------CCCCCCHHH
Confidence 445899999888889999999888877753 33 23320 0 111111 12
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCC
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV 225 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~ 225 (441)
...+++.|...++|++++..-+... .....+.+.+.| |+||. +|.|+..
T Consensus 69 q~~~i~~li~~~vdgIiv~~~d~~a--l~~~l~~a~~~g--IpVV~----~d~~~~~ 117 (336)
T PRK15408 69 QVQLINNFVNQGYNAIIVSAVSPDG--LCPALKRAMQRG--VKVLT----WDSDTKP 117 (336)
T ss_pred HHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHHCC--CeEEE----eCCCCCC
Confidence 3367888999999999998655331 122334455555 56774 5666543
No 168
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=35.27 E-value=3.2e+02 Score=26.17 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=25.6
Q ss_pred ccccccccccccCCCCHHHHHHHHHH--hCCCEEEEEcCCCch
Q 013518 153 HKRGGTILGTSRGGHDTSKIVDSIQD--RGINQVYIIGGDGTQ 193 (441)
Q Consensus 153 ~~~GGs~LGssR~~~~~~~i~~~l~~--~~Id~LvvIGGdgs~ 193 (441)
...|||.|.+. +.++++++.+.+ .+.+-++|.+|-+..
T Consensus 4 iK~GGs~l~~~---~~~~~~~~~i~~l~~g~~vvvV~Sg~~~~ 43 (227)
T cd04234 4 QKFGGTSVASA---ERIKRVADIIKAYEKGNRVVVVVSAMGGV 43 (227)
T ss_pred EEECccccCCH---HHHHHHHHHHHHhhcCCCEEEEEcCCCcc
Confidence 45789888754 235555555554 689999999775543
No 169
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=35.03 E-value=58 Score=33.52 Aligned_cols=64 Identities=22% Similarity=0.407 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHhC---CCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHH
Q 013518 168 DTSKIVDSIQDRG---INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 237 (441)
Q Consensus 168 ~~~~i~~~l~~~~---Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~ 237 (441)
..+++++.+++++ .|.++.|||--.+..|..++... .++ +++|.||-|. +..+|-+.|.-++++
T Consensus 68 ~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~-~rg--ip~i~VPTTl---la~~ds~~g~k~~i~ 134 (344)
T cd08169 68 TVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTL-FRG--IAFIRVPTTL---LAQSDSGVGGKTGIN 134 (344)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHh-ccC--CcEEEecCCc---ccccccCccceEeEe
Confidence 4678888888877 89999999988888887666432 234 6799999994 234566666666555
No 170
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=34.57 E-value=1.2e+02 Score=26.71 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=35.2
Q ss_pred CCeeeCChhhhhccccccccccccccC-CCCHHHHHHHHHHhCCCEEEEEcCCCc
Q 013518 139 KNTINLTPKVVNDIHKRGGTILGTSRG-GHDTSKIVDSIQDRGINQVYIIGGDGT 192 (441)
Q Consensus 139 ~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~~~i~~~l~~~~Id~LvvIGGdgs 192 (441)
|++--++++..+.+...|-.++-..-. .-|++++++.+.+++.+-++++|+.|.
T Consensus 42 GDfDSi~~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~~~~~~i~v~Ga~Gg 96 (123)
T PF04263_consen 42 GDFDSISPEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIEQGPDEIIVLGALGG 96 (123)
T ss_dssp C-SSSS-HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHHTTTSEEEEES-SSS
T ss_pred ecCCCCChHHHHHHHhhccceecccccccCHHHHHHHHHHHCCCCEEEEEecCCC
Confidence 455556665555555555445544411 236899999999999999999999997
No 171
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=34.48 E-value=3.7e+02 Score=25.91 Aligned_cols=106 Identities=17% Similarity=0.307 Sum_probs=56.6
Q ss_pred EEccCCCCcchhH-HHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccccc-----ccccCC---
Q 013518 96 IVTCGGLCPGLNT-VIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTIL-----GTSRGG--- 166 (441)
Q Consensus 96 Il~sGG~apGmNa-~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~L-----GssR~~--- 166 (441)
++.||+ +-|+.. +.+++. . .++..|.-+-.|..-.+.. -++...+.+...||.+| ++....
T Consensus 76 ~IVSG~-A~GiD~~ah~~al----~-~~g~tIaVl~~gld~~yp~----~n~~l~~~i~~~gglliSe~p~~~~~~~~~f 145 (220)
T TIGR00732 76 TIVSGL-ALGIDGIAHKAAL----K-VNGRTIAVLGTGLDQIYPR----QNSKLAAKIAENGGLLLSEYPPDTKPIKYNF 145 (220)
T ss_pred EEEcCc-hhhHHHHHHHHHH----H-cCCCEEEEECCCCccCCch----hhHHHHHHHHHcCCEEEEecCCCCCCCcccH
Confidence 344554 445554 333332 2 3554555555554332221 23444556666777655 111111
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcC---CCchHHHHHHHHHHHHcCCCceEEEeeccccC
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGG---DGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGG---dgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (441)
..+.+++..| =+++|+++. .||+.+|..- .+.| -+|..+|..+++
T Consensus 146 ~~RNriia~l----s~~vivve~~~~sGtl~ta~~A----~~~g--r~v~~~pg~~~~ 193 (220)
T TIGR00732 146 PKRNRIISGL----SRAVLVVEAPLKSGALITARYA----LEQG--REVFAYPGDLNS 193 (220)
T ss_pred HHHHHHHHHh----cCEEEEEECCCCCchHHHHHHH----HHhC--CcEEEEcCCCCC
Confidence 1245565555 478899987 4777665533 3345 469999998886
No 172
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=34.34 E-value=70 Score=33.66 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhCCC---EEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHH
Q 013518 169 TSKIVDSIQDRGIN---QVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 237 (441)
Q Consensus 169 ~~~i~~~l~~~~Id---~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~ 237 (441)
..++.+.+++++.+ .++.|||-=++..|..++-. ..+| +++|.||-| =+..+|.+.|.-++++
T Consensus 97 v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~-~~rg--ip~I~IPTT---lla~vda~~g~~~~v~ 162 (389)
T PRK06203 97 VEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAAT-AHRG--VRLIRIPTT---VLAQNDSGVGVKNGIN 162 (389)
T ss_pred HHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHH-hcCC--CCEEEEcCC---CccccCCCccchhhee
Confidence 67889999999998 99999998888887766532 2234 679999999 2234555555544444
No 173
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=34.33 E-value=81 Score=34.46 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCchH--HHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHH
Q 013518 181 INQVYIIGGDGTQK--GAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (441)
Q Consensus 181 Id~LvvIGGdgs~~--~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i 246 (441)
+|+++|-||+|.-- +-....+++++++ +|+.|| |+|++.|+=..++.+-.+
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~--iP~lGI-------------ClGmQ~aviE~ARnv~Gl 396 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENN--IPFLGI-------------CLGMQLAVIEFARNVLGL 396 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhcC--CCEEEE-------------chhHHHHHHHHHHHhcCC
Confidence 99999999999632 2233455665543 445554 999999987777655433
No 174
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=34.31 E-value=61 Score=30.02 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=35.3
Q ss_pred cccccCCCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 160 LGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 160 LGssR~~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
.+--|+++...+++++.++.+++.+|.+.|-...-. -.++- ....||||+|-..
T Consensus 33 ~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp-gvva~-----~t~~PVIgvP~~~ 86 (156)
T TIGR01162 33 VSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP-GMVAA-----LTPLPVIGVPVPS 86 (156)
T ss_pred ECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH-HHHHh-----ccCCCEEEecCCc
Confidence 334466777888899999999987777766543221 11222 2467899999754
No 175
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=33.92 E-value=1.4e+02 Score=26.00 Aligned_cols=74 Identities=22% Similarity=0.333 Sum_probs=49.9
Q ss_pred cccccccCCeeeCChhhhhccccccccccccccCCCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc--CCC
Q 013518 132 GYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR--GLK 209 (441)
Q Consensus 132 G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~--~~~ 209 (441)
|..||+-.++.-+++.+..++.. .+|.+.+++.++++.=++++ ||--=....+..|-+.++++ +.+
T Consensus 27 GITGFyl~eYkGmSP~~wkgf~l-----------~EDpe~ai~~I~d~s~~aV~-I~TVV~~~~~~~i~~~i~ekL~~er 94 (110)
T PF10126_consen 27 GITGFYLHEYKGMSPQDWKGFLL-----------DEDPEMAIKAINDLSENAVL-IGTVVDEEKVEKIEKLIKEKLKNER 94 (110)
T ss_pred CccEEEeEeecCCChHHhcCccc-----------ccCHHHHHHHHHHhccCcEE-EEEEECHHHHHHHHHHHHHHhcCCc
Confidence 67777777777777777776531 27899999999998878765 44444455566666555554 445
Q ss_pred ceEEEeec
Q 013518 210 VAVAGIPK 217 (441)
Q Consensus 210 i~vvgIPk 217 (441)
-.++.+|-
T Consensus 95 yTii~iPi 102 (110)
T PF10126_consen 95 YTIIEIPI 102 (110)
T ss_pred eEEEEeeE
Confidence 56777774
No 176
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=33.42 E-value=98 Score=30.69 Aligned_cols=70 Identities=19% Similarity=0.371 Sum_probs=49.4
Q ss_pred eeCChhhhhccccccccccccccC-CCCHHHHHHHHHHhCCCEEEEE----cCCCchHHHHHHHHHHHHcCCCceEE
Q 013518 142 INLTPKVVNDIHKRGGTILGTSRG-GHDTSKIVDSIQDRGINQVYII----GGDGTQKGAAVIYEEIRQRGLKVAVA 213 (441)
Q Consensus 142 ~~L~~~~v~~~~~~GGs~LGssR~-~~~~~~i~~~l~~~~Id~LvvI----GGdgs~~~a~~L~~~~~~~~~~i~vv 213 (441)
++++++++-......+.+..||-- ..++.++.+.+.+.+-|.+++| |=.||+..|...++.. .+.++.|+
T Consensus 40 ~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~Vi 114 (280)
T PF02645_consen 40 VDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHVI 114 (280)
T ss_dssp TTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEEE
T ss_pred CCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEEE
Confidence 378888887777667777677654 3568888888888999988887 5678888888877765 24455444
No 177
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=33.04 E-value=4.8e+02 Score=27.04 Aligned_cols=150 Identities=9% Similarity=0.069 Sum_probs=73.8
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCchHHH---HHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHH
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGTQKGA---AVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs~~~a---~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i 246 (441)
+.|.+.+++++-+.++|+.+--+-... ..+.++++++ ..++|+.++. +.+.+.++.-||+.|++.+.+.+..-
T Consensus 77 ~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~-~~~~vi~v~t---~gf~g~~~~~G~~~a~~al~~~l~~~ 152 (406)
T cd01967 77 KAIKEAYERFPPKAIFVYSTCPTGLIGDDIEAVAKEASKE-LGIPVIPVNC---EGFRGVSQSLGHHIANDAILDHLVGT 152 (406)
T ss_pred HHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHh-hCCCEEEEeC---CCeeCCcccHHHHHHHHHHHHHhcCC
Confidence 455666778899999998865443222 2223333322 2356666654 34445577889999999988766421
Q ss_pred HHhhhcCCceEEEEEecCCCccHHH-HHHhhccCCCCEEEcCCCCCChhhHHHHHhhhhhhccCCcchh-hhHHHHHHHH
Q 013518 247 HVEAESIENGIGVVKLMGRYCGFIA-MYATLGSRDVDCCLIPESPFYLEGEESLQSMNQQDASGNKLLQ-DVGLWISHKI 324 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEvMGr~~G~LA-~~~aLA~~~ad~iliPE~~~~l~~~e~l~~~~~~d~~G~~~l~-~i~~~l~~~I 324 (441)
.......++.|-|+=-+- ..|.+. +.--|..-|.+...+....-++++++.+ ..+.-|+.+. ..+..+++.+
T Consensus 153 ~~~~~~~~~~VNiig~~~-~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~-----~~A~~niv~~~~~~~~~a~~L 226 (406)
T cd01967 153 KEPEEKTPYDVNIIGEYN-IGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRA-----HRAKLNLVHCSRSMNYLAREM 226 (406)
T ss_pred CCcCCCCCCeEEEEeccc-cchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhC-----ccCCEEEEEChHHHHHHHHHH
Confidence 100112234555543221 112221 1111222244544333223345554211 1223334332 2466677777
Q ss_pred HHHhc
Q 013518 325 KDHFA 329 (441)
Q Consensus 325 ~~~~~ 329 (441)
+++++
T Consensus 227 ~~r~G 231 (406)
T cd01967 227 EERYG 231 (406)
T ss_pred HHhhC
Confidence 77765
No 178
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=33.04 E-value=38 Score=29.23 Aligned_cols=44 Identities=20% Similarity=0.420 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeecc
Q 013518 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (441)
Q Consensus 172 i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (441)
+.+.+.+..+|.++++-||+-+..+. +.++++|.++-+++.|..
T Consensus 87 ~~~~~~~~~~d~ivLvSgD~Df~~~v---~~l~~~g~~V~v~~~~~~ 130 (146)
T PF01936_consen 87 ILELAYENPPDTIVLVSGDSDFAPLV---RKLRERGKRVIVVGAEDS 130 (146)
T ss_dssp HHHHG--GG-SEEEEE---GGGHHHH---HHHHHH--EEEEEE-GGG
T ss_pred HHHHhhccCCCEEEEEECcHHHHHHH---HHHHHcCCEEEEEEeCCC
Confidence 34444445679999999999987654 444567888778875443
No 179
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=33.01 E-value=2.7e+02 Score=28.32 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHh--CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCC
Q 013518 167 HDTSKIVDSIQDR--GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID 227 (441)
Q Consensus 167 ~~~~~i~~~l~~~--~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td 227 (441)
.++.++++.+++. +.|++||+-|-+||.-...+....- .+++.|||-.=+-.--+.+++|
T Consensus 57 ~~~~~la~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l-~~l~kPVVlTGa~~P~~~~~sD 118 (313)
T PF00710_consen 57 EDWLELARAIQAALDDYDGVVVTHGTDTMEETAFFLSLLL-DNLDKPVVLTGAMRPLSAPGSD 118 (313)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEE--STTHHHHHHHHHHHE-ES-SSEEEEE--SS-TTSTT-S
T ss_pred HHHHHHHHHHHHHHHhcCeEEEecCchHHHHHHHHHHHHh-cCCCCCEEEeCCcCCCcCCCCc
Confidence 3444444444433 5999999999999987555544432 2445677755443433444444
No 180
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=32.25 E-value=1.1e+02 Score=30.15 Aligned_cols=86 Identities=20% Similarity=0.270 Sum_probs=46.0
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (441)
..|+.++ ||. |+ ++..+++.+.+.| +.++.|.++||-.- + -....++.|...+-.+|=.+=+....|
T Consensus 105 ~~~v~ll--G~~-~~---v~~~a~~~l~~~y-~l~i~g~~~Gyf~~---~---e~~~i~~~I~~s~~dil~VglG~PkQE 171 (243)
T PRK03692 105 GTPVFLV--GGK-PE---VLAQTEAKLRTQW-NVNIVGSQDGYFTP---E---QRQALFERIHASGAKIVTVAMGSPKQE 171 (243)
T ss_pred CCeEEEE--CCC-HH---HHHHHHHHHHHHh-CCEEEEEeCCCCCH---H---HHHHHHHHHHhcCCCEEEEECCCcHHH
Confidence 4577666 554 44 4444555555567 67999999998531 0 012235556555554432222222334
Q ss_pred HHHH-HHHHhCCCEEEEEcC
Q 013518 171 KIVD-SIQDRGINQVYIIGG 189 (441)
Q Consensus 171 ~i~~-~l~~~~Id~LvvIGG 189 (441)
..+. +....+...++.+||
T Consensus 172 ~~~~~~~~~~~~~v~~gvGg 191 (243)
T PRK03692 172 IFMRDCRLVYPDALYMGVGG 191 (243)
T ss_pred HHHHHHHHhCCCCEEEEeCe
Confidence 4433 344446666777777
No 181
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=32.16 E-value=2.7e+02 Score=24.72 Aligned_cols=119 Identities=11% Similarity=0.110 Sum_probs=60.9
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC----
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG---- 166 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~---- 166 (441)
+.||-+-+.|||.=-+ =..++....+ ..|.+|+ +.| -. .-.++.++.....+..+++=|-..
T Consensus 2 ~~~v~~a~~g~D~Hd~---g~~iv~~~l~-~~GfeVi-----~lg----~~-~s~e~~v~aa~e~~adii~iSsl~~~~~ 67 (132)
T TIGR00640 2 RPRILVAKMGQDGHDR---GAKVIATAYA-DLGFDVD-----VGP----LF-QTPEEIARQAVEADVHVVGVSSLAGGHL 67 (132)
T ss_pred CCEEEEEeeCCCccHH---HHHHHHHHHH-hCCcEEE-----ECC----CC-CCHHHHHHHHHHcCCCEEEEcCchhhhH
Confidence 3588888888875322 2222222222 2333544 111 11 111234555556666655544321
Q ss_pred CCHHHHHHHHHHhCC-CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHH
Q 013518 167 HDTSKIVDSIQDRGI-NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 245 (441)
Q Consensus 167 ~~~~~i~~~l~~~~I-d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~ 245 (441)
+...++++.|++.+. +..+++||.=.-... +++++.|+ |..|+-.|-+..+.+++.+
T Consensus 68 ~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~----~~l~~~Gv------------------d~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 68 TLVPALRKELDKLGRPDILVVVGGVIPPQDF----DELKEMGV------------------AEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCChHhH----HHHHHCCC------------------CEEECCCCCHHHHHHHHHH
Confidence 246777888888777 566777875543222 22333454 4555556666666655543
No 182
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=32.02 E-value=4.2e+02 Score=28.46 Aligned_cols=139 Identities=20% Similarity=0.210 Sum_probs=88.6
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHH-
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK- 171 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~- 171 (441)
.+||--+ ||-==.||+++.+.+... + .-+ +++-|.++|+.. ||- |.=++.|+..
T Consensus 13 ~~Gi~SV---Csahp~VieAAl~~a~~~-~-~pv--------------LiEAT~NQVdq~---GGY---TGmtP~dF~~~ 67 (421)
T PRK15052 13 HIGICSV---CSAHPLVIEAALAFDLNS-T-RKV--------------LIEATSNQVNQF---GGY---TGMTPADFREF 67 (421)
T ss_pred CCceeeE---CCCCHHHHHHHHHHHhhc-C-CcE--------------EEEecccccccc---CCc---CCCCHHHHHHH
Confidence 4566665 454446899988766431 1 122 467888888876 774 5555556544
Q ss_pred HHHHHHHhCCCE-EEEEcCCC-------------chHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHH
Q 013518 172 IVDSIQDRGINQ-VYIIGGDG-------------TQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 237 (441)
Q Consensus 172 i~~~l~~~~Id~-LvvIGGdg-------------s~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~ 237 (441)
+.+.-++.+++. .+++|||- +|..|..+....-+.||. -|+|=.|++ ..+-..-+.-++-++
T Consensus 68 V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF~--kIHLD~Sm~--ca~d~~~L~d~~vA~ 143 (421)
T PRK15052 68 VYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGFS--KIHLDASMS--CADDPIPLAPETVAE 143 (421)
T ss_pred HHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc--eEEecCCCC--ccCCCccCCHHHHHH
Confidence 445567788998 99999983 355555555555556886 789988888 122224556688888
Q ss_pred HHHHHHHHHHHhhh--cCCceEEEE
Q 013518 238 EAQRAINAAHVEAE--SIENGIGVV 260 (441)
Q Consensus 238 ~~~~~i~~i~~~a~--s~~~rv~iV 260 (441)
.+++.|...-.++. ....-+++|
T Consensus 144 Raa~L~~~aE~~~~~~~~~~~vYvI 168 (421)
T PRK15052 144 RAAVLCQAAESVATDCQREQLSYVI 168 (421)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEe
Confidence 88887775544443 223347777
No 183
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=31.97 E-value=56 Score=30.38 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=24.5
Q ss_pred HHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 174 ~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
+.+++++.|++|+-||-++-.-.......++....++||.||
T Consensus 37 ~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGI 78 (191)
T PRK06774 37 TDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGV 78 (191)
T ss_pred HHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEE
Confidence 335667899999999998864332211122212224667766
No 184
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=31.56 E-value=2.8e+02 Score=22.35 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=40.1
Q ss_pred EEEccCCCCc-chhHHHHHHHHHHHHhcCCcEE-EEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHH
Q 013518 95 CIVTCGGLCP-GLNTVIREIVCGLYHMYGVSKI-LGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (441)
Q Consensus 95 aIl~sGG~ap-GmNa~Ir~~v~~~~~~~~~~~v-~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (441)
.++.-|.+-| ..|..++.+.+.+.+..+...+ +|+... ...+.+.+
T Consensus 3 llv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~--------------------------------~~P~i~~~ 50 (101)
T cd03409 3 LVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSG--------------------------------LGPDTEEA 50 (101)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECC--------------------------------CCCCHHHH
Confidence 3444577777 8999999998887654432222 122211 24567888
Q ss_pred HHHHHHhCCCEEEEE
Q 013518 173 VDSIQDRGINQVYII 187 (441)
Q Consensus 173 ~~~l~~~~Id~LvvI 187 (441)
++.|++.+++.++++
T Consensus 51 l~~l~~~g~~~vvvv 65 (101)
T cd03409 51 IRELAEEGYQRVVIV 65 (101)
T ss_pred HHHHHHcCCCeEEEE
Confidence 999999898887764
No 185
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.49 E-value=1.9e+02 Score=25.73 Aligned_cols=123 Identities=14% Similarity=0.165 Sum_probs=65.7
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhh-ccccccccccccc-cC---
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVN-DIHKRGGTILGTS-RG--- 165 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~-~~~~~GGs~LGss-R~--- 165 (441)
+.||.+.+.||+.=.+..-+-+.. + + ..|.+|+ |.|. ..+.+++- -.....-.+++-| ..
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~--l-r-~~G~eVi-----~LG~------~vp~e~i~~~a~~~~~d~V~lS~~~~~~ 67 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRA--L-T-EAGFEVI-----NLGV------MTSQEEFIDAAIETDADAILVSSLYGHG 67 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHH--H-H-HCCCEEE-----ECCC------CCCHHHHHHHHHHcCCCEEEEcCccccC
Confidence 457888888888766655443332 2 2 2334554 2232 23333322 2223333333332 21
Q ss_pred CCCHHHHHHHHHHhCC-CEEEEEcCCCchHH--HHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHH
Q 013518 166 GHDTSKIVDSIQDRGI-NQVYIIGGDGTQKG--AAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRA 242 (441)
Q Consensus 166 ~~~~~~i~~~l~~~~I-d~LvvIGGdgs~~~--a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~ 242 (441)
.....++++.|++.+. +..+++||.-+... .....+.+++.|+ |..|+-+|-.+.+++.
T Consensus 68 ~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~------------------~~vf~~~~~~~~i~~~ 129 (137)
T PRK02261 68 EIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF------------------DRVFPPGTDPEEAIDD 129 (137)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCC------------------CEEECcCCCHHHHHHH
Confidence 2356788899999877 66789999764321 2334455666665 3345555556666666
Q ss_pred HHHH
Q 013518 243 INAA 246 (441)
Q Consensus 243 i~~i 246 (441)
+++.
T Consensus 130 l~~~ 133 (137)
T PRK02261 130 LKKD 133 (137)
T ss_pred HHHH
Confidence 5543
No 186
>PLN02335 anthranilate synthase
Probab=30.15 E-value=80 Score=30.44 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=30.7
Q ss_pred HHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChh
Q 013518 176 IQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFD 233 (441)
Q Consensus 176 l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~Gfd 233 (441)
+..++.|++|+-||-++-.......+.+++.+-.+|+.|| |+|++
T Consensus 58 ~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGI-------------ClG~Q 102 (222)
T PLN02335 58 LKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGV-------------CMGLQ 102 (222)
T ss_pred HHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEe-------------cHHHH
Confidence 4557899999999999876543333444444445667766 89988
No 187
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=29.98 E-value=78 Score=32.22 Aligned_cols=153 Identities=16% Similarity=0.210 Sum_probs=83.2
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC-CCCHH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDTS 170 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~~ 170 (441)
..||++..--..|-....++++-..+.+ ++ ..+ +|.++.. .+...
T Consensus 59 ~~Ig~i~p~~~~~~~~~i~~gi~~~~~~-~g-y~~--------------------------------~l~~~~~~~~~e~ 104 (333)
T COG1609 59 KTIGLVVPDITNPFFAEILKGIEEAARE-AG-YSL--------------------------------LLANTDDDPEKER 104 (333)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEE--------------------------------EEECCCCCHHHHH
Confidence 4788887655557777788888777753 22 222 2444443 34467
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeecccc-CCCC--CCCCCCChhhHHHHHHHHHHHHH
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID-NDIP--VIDKSFGFDTAVEEAQRAINAAH 247 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID-NDi~--~td~s~GfdTA~~~~~~~i~~i~ 247 (441)
++.+.|...++|++|+.| ...... +.+.+.+.++ |+|.+=.+.+ .+++ ++|..-|...|++.+.+
T Consensus 105 ~~~~~l~~~~vdGiIi~~-~~~~~~---~~~~l~~~~~--P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~------ 172 (333)
T COG1609 105 EYLETLLQKRVDGLILLG-ERPNDS---LLELLAAAGI--PVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIE------ 172 (333)
T ss_pred HHHHHHHHcCCCEEEEec-CCCCHH---HHHHHHhcCC--CEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHH------
Confidence 889999999999999999 222222 2233334454 4665554443 3332 23444344434333322
Q ss_pred HhhhcCCceEEEEEe-------cCCCccHHHHHHhhccCCCCEEEcCCCCCChhh
Q 013518 248 VEAESIENGIGVVKL-------MGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG 295 (441)
Q Consensus 248 ~~a~s~~~rv~iVEv-------MGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~ 295 (441)
.+| +++.++-. .-|..||+.+.....- ..+-.++.+..|+.+.
T Consensus 173 ---~G~-~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~-~~~~~~i~~~~~~~~~ 222 (333)
T COG1609 173 ---LGH-RRIAFIGGPLDSSASRERLEGYRAALREAGL-PINPEWIVEGDFSEES 222 (333)
T ss_pred ---CCC-ceEEEEeCCCccccHhHHHHHHHHHHHHCCC-CCCcceEEecCCChHH
Confidence 233 45655533 3344677775544332 1113566666665443
No 188
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=29.97 E-value=4.5e+02 Score=25.48 Aligned_cols=86 Identities=13% Similarity=0.220 Sum_probs=49.4
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC-CCCHHH
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDTSK 171 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~~~ 171 (441)
+||++...=..|-...+++++-+.+.+ ++ .++.- ++.+.. .....+
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~-~g-~~v~~-------------------------------~~~~~~d~~~~~~ 47 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKE-LG-VDAIY-------------------------------VGPTTADAAGQVQ 47 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHH-hC-CeEEE-------------------------------ECCCCCCHHHHHH
Confidence 577777655567888888888877753 33 23221 111111 123456
Q ss_pred HHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 172 i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
.++.+...++|++++.+.+.+ ....+.+++++.+ +|||.+
T Consensus 48 ~i~~~~~~~~DgiIi~~~~~~--~~~~~~~~~~~~~--iPvV~v 87 (298)
T cd06302 48 IIEDLIAQGVDAIAVVPNDPD--ALEPVLKKAREAG--IKVVTH 87 (298)
T ss_pred HHHHHHhcCCCEEEEecCCHH--HHHHHHHHHHHCC--CeEEEE
Confidence 677777889999999875532 1223334444445 456654
No 189
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.22 E-value=4.9e+02 Score=24.51 Aligned_cols=86 Identities=13% Similarity=0.093 Sum_probs=49.7
Q ss_pred eEEEEccCC-CCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccccccccc-CCCCHH
Q 013518 93 HACIVTCGG-LCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR-GGHDTS 170 (441)
Q Consensus 93 ~iaIl~sGG-~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR-~~~~~~ 170 (441)
|||++.-.- ..|-.+..+.++-+.+.. ++ .++. +..+.. ......
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~-~g-~~v~-------------------------------~~~~~~~~~~~~~ 47 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKD-LG-VDVE-------------------------------YRGPETFDVADMA 47 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHH-hC-CEEE-------------------------------EECCCCCCHHHHH
Confidence 577877654 567788888888777643 22 2222 111111 112244
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
..++.|...++|++++.+.+.... ....+.+.+++ +++|.+
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~--~~~l~~~~~~~--ipvV~~ 88 (271)
T cd06312 48 RLIEAAIAAKPDGIVVTIPDPDAL--DPAIKRAVAAG--IPVISF 88 (271)
T ss_pred HHHHHHHHhCCCEEEEeCCChHHh--HHHHHHHHHCC--CeEEEe
Confidence 677788889999999998764321 12223444445 557755
No 190
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=29.18 E-value=4.9e+02 Score=24.53 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=39.1
Q ss_pred eEEEEccCC--CCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHH
Q 013518 93 HACIVTCGG--LCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (441)
Q Consensus 93 ~iaIl~sGG--~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (441)
||||+...+ .-|-...++.++-+.+.+ ++ .+++ +..+. ..+...
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~-~g-y~~~-------------------------------~~~~~-~~~~~~ 46 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKE-LG-VEVK-------------------------------YVESV-EDADYE 46 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHh-cC-ceEE-------------------------------EEecC-CHHHHH
Confidence 678888642 357777777777766542 22 1221 01111 222345
Q ss_pred HHHHHHHHhCCCEEEEEcCC
Q 013518 171 KIVDSIQDRGINQVYIIGGD 190 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGd 190 (441)
+.++.|...++|++++.+.+
T Consensus 47 ~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 47 PNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHcCCCEEEECCcc
Confidence 67788899999999998755
No 191
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=29.16 E-value=27 Score=38.57 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHH-HHHHH-HHcCCCceEEEeeccccCCCCCC-CCCCChhhHHHHHHHHHHH
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAV-IYEEI-RQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDTAVEEAQRAINA 245 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~-L~~~~-~~~~~~i~vvgIPkTIDNDi~~t-d~s~GfdTA~~~~~~~i~~ 245 (441)
-.++++++.--+-|+++++||||.+.-+.- |.+.- -+...+++|--||+==.|.+..+ -.+-||+-+++.....|.
T Consensus 225 Arei~rt~dl~kyDgIv~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~~~~~~a~l~iir- 303 (579)
T KOG1116|consen 225 AREIVRTLDLGKYDGIVCVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGPDLPLLATLLIIR- 303 (579)
T ss_pred HHHHHHhhhccccceEEEecCCcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHHhhcccCcccchHHHHHHHc-
Confidence 467888888888999999999999876531 22110 01145788999999999999653 346676423333333221
Q ss_pred HHHhhhcCCceEEEEEecCCC--ccHHHHHHhhc
Q 013518 246 AHVEAESIENGIGVVKLMGRY--CGFIAMYATLG 277 (441)
Q Consensus 246 i~~~a~s~~~rv~iVEvMGr~--~G~LA~~~aLA 277 (441)
.--. .--++.+|.++++ -++|.+.-||-
T Consensus 304 --g~~t--~~dv~~v~~~~~~~~fSfLs~~wGlI 333 (579)
T KOG1116|consen 304 --GRLT--PMDVSVVEYAGKDRHFSFLSAAWGLI 333 (579)
T ss_pred --cCCC--chheeehhhccCcceEEEEeeeeeeE
Confidence 1111 1236677776665 34444333333
No 192
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=29.13 E-value=59 Score=28.03 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=60.4
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (441)
.||.|+.+|-. ++|. ++++++ . +.+.+.++.=- +-.-..+...+.....|+.- ..+.-.+.++
T Consensus 3 kkvLIanrGei------a~r~-~ra~r~-~-Gi~tv~v~s~~------d~~s~~~~~ad~~~~~~~~~--~~~~yl~~e~ 65 (110)
T PF00289_consen 3 KKVLIANRGEI------AVRI-IRALRE-L-GIETVAVNSNP------DTVSTHVDMADEAYFEPPGP--SPESYLNIEA 65 (110)
T ss_dssp SEEEESS-HHH------HHHH-HHHHHH-T-TSEEEEEEEGG------GTTGHHHHHSSEEEEEESSS--GGGTTTSHHH
T ss_pred CEEEEECCCHH------HHHH-HHHHHH-h-CCcceeccCch------hcccccccccccceecCcch--hhhhhccHHH
Confidence 37777777654 3333 456654 3 35666664311 11112222233333333211 1122357899
Q ss_pred HHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 172 i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
+++..++.++++ +.||-|.+.-...|++.+++.|+ .++|-
T Consensus 66 I~~ia~~~g~~~--i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 66 IIDIARKEGADA--IHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp HHHHHHHTTESE--EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred HhhHhhhhcCcc--cccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 999999997776 56999999999999999887774 46653
No 193
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=29.04 E-value=4.9e+02 Score=25.56 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=47.9
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (441)
..||++...-..|-...++.++-+.+.+ ++ .++.-.. +.........
T Consensus 64 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 110 (331)
T PRK14987 64 RAIGVLLPSLTNQVFAEVLRGIESVTDA-HG-YQTMLAH-------------------------------YGYKPEMEQE 110 (331)
T ss_pred CEEEEEeCCCcchhHHHHHHHHHHHHHH-CC-CEEEEec-------------------------------CCCCHHHHHH
Confidence 4889988655567777788888777643 22 2322110 0000111235
Q ss_pred HHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 172 i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
.++.+...++|++++.+-+.+- ...+.+.+.+ +|+|.+
T Consensus 111 ~~~~~~~~~vdgiI~~~~~~~~----~~~~~l~~~~--iPvV~~ 148 (331)
T PRK14987 111 RLESMLSWNIDGLILTERTHTP----RTLKMIEVAG--IPVVEL 148 (331)
T ss_pred HHHHHHhcCCCEEEEcCCCCCH----HHHHHHHhCC--CCEEEE
Confidence 6677888999999998644332 1223343444 557754
No 194
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=29.02 E-value=1.6e+02 Score=26.30 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=54.1
Q ss_pred EEEEEcCC--CchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCC-hhhHHHHHHHHHHHHHHhhhcCCceEEE
Q 013518 183 QVYIIGGD--GTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFG-FDTAVEEAQRAINAAHVEAESIENGIGV 259 (441)
Q Consensus 183 ~LvvIGGd--gs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~G-fdTA~~~~~~~i~~i~~~a~s~~~rv~i 259 (441)
.++.+--| .+-..|..|.+++++++..+.+..+++ +...| .+ |..++...++.+.+.-..+......++|
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~~g~~v~~~~i~~-----l~~~~--~~~F~~Gl~~Lv~~~~~~v~~~~~~~~~v~~ 96 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEEKGINVEVVEIEG-----LQTED--PEKFREGLRNLVRWVAEEVKNYKGRGYEVIF 96 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEE--------E------HHHHHHHHHHHHHHTHHHHHHHHHTT-EEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeee-----ecccc--hHHHHHHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence 45555443 224456777888888887777766665 22222 22 8888888888887765544443445655
Q ss_pred EEecCCCc--cHHHHHHhhccCCCCEEEcCCC
Q 013518 260 VKLMGRYC--GFIAMYATLGSRDVDCCLIPES 289 (441)
Q Consensus 260 VEvMGr~~--G~LA~~~aLA~~~ad~iliPE~ 289 (441)
-=|=|=++ +|+.+.+.+ . +...+|+-|.
T Consensus 97 n~TGGfK~~~~~~~~~g~~-~-~~~v~Yi~E~ 126 (136)
T PF09651_consen 97 NATGGFKAEIAYLTLLGML-Y-GDPVYYIFEE 126 (136)
T ss_dssp E-SSS-HHHHHHHHHHHHH-T---EEEEEETT
T ss_pred EeCCChHHHHHHHHHHHHH-c-CCCEEEEEcC
Confidence 55544333 566666665 3 5779999996
No 195
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=29.02 E-value=5.3e+02 Score=24.78 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=50.2
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHH
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (441)
+|||+...-..|-...++.++...+.. ++ .++.- ..+........+.
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~~~ 47 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKE-LG-AEVIV-------------------------------QNANGDPAKQISQ 47 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------ECCCCCHHHHHHH
Confidence 367777666677777778887776643 22 22220 1111111234577
Q ss_pred HHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 173 ~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
++.+...++|++++.+.+.+. ...+.+++.+.+ ++||.+
T Consensus 48 i~~~~~~~vdgiii~~~~~~~--~~~~l~~l~~~~--ipvV~~ 86 (288)
T cd01538 48 IENMIAKGVDVLVIAPVDGEA--LASAVEKAADAG--IPVIAY 86 (288)
T ss_pred HHHHHHcCCCEEEEecCChhh--HHHHHHHHHHCC--CCEEEE
Confidence 788888999999998866542 223334455545 567754
No 196
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=28.45 E-value=97 Score=27.67 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHhCC-CEEEEEcCCC
Q 013518 167 HDTSKIVDSIQDRGI-NQVYIIGGDG 191 (441)
Q Consensus 167 ~~~~~i~~~l~~~~I-d~LvvIGGdg 191 (441)
..+.++++.|++.++ +..+++||.-
T Consensus 65 ~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 65 IDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 457899999999999 8889999984
No 197
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=28.28 E-value=3.2e+02 Score=28.61 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe-eccccCCCCCCCCCCChhhHHHHHHHHHHHHH
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI-PKTIDNDIPVIDKSFGFDTAVEEAQRAINAAH 247 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI-PkTIDNDi~~td~s~GfdTA~~~~~~~i~~i~ 247 (441)
.-.+++.+++.--+..++-|.-.|..+|..|.+ .|.+.--||| |.+|..==--+-.-.+--||+...+++...
T Consensus 138 ~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~----aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~-- 211 (346)
T PRK05096 138 FVQFVAKAREAWPDKTICAGNVVTGEMVEELIL----SGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHG-- 211 (346)
T ss_pred HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHH----cCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHH--
Confidence 456777788765565566666688888887765 3666555666 666653211111111234555444444321
Q ss_pred HhhhcCCceEEEEEecC-CCccHHHHHHhhccCCCCEEEcCC
Q 013518 248 VEAESIENGIGVVKLMG-RYCGFIAMYATLGSRDVDCCLIPE 288 (441)
Q Consensus 248 ~~a~s~~~rv~iVEvMG-r~~G~LA~~~aLA~~~ad~iliPE 288 (441)
.++-||===| |++|+++- |||. |||.|.+-.
T Consensus 212 -------~gvpiIADGGi~~sGDI~K--Alaa-GAd~VMlGs 243 (346)
T PRK05096 212 -------LGGQIVSDGGCTVPGDVAK--AFGG-GADFVMLGG 243 (346)
T ss_pred -------cCCCEEecCCcccccHHHH--HHHc-CCCEEEeCh
Confidence 1233443222 68899985 4555 689988754
No 198
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=28.22 E-value=2.4e+02 Score=24.23 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=27.3
Q ss_pred hhccccccccccccccCC----CCHHHHHHHHHHhCC-CEEEEEcCCCch
Q 013518 149 VNDIHKRGGTILGTSRGG----HDTSKIVDSIQDRGI-NQVYIIGGDGTQ 193 (441)
Q Consensus 149 v~~~~~~GGs~LGssR~~----~~~~~i~~~l~~~~I-d~LvvIGGdgs~ 193 (441)
++.....+-.+++-|-.. +...++++.|++.+. +..+++||...-
T Consensus 43 ~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~ 92 (122)
T cd02071 43 VEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPP 92 (122)
T ss_pred HHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 344445555555444321 345677888888866 667888887653
No 199
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=28.15 E-value=1.2e+02 Score=32.88 Aligned_cols=51 Identities=10% Similarity=0.215 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeecccc
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (441)
++..+..|-+..+|.++||||.-|-.+. .|.+-+++++.+.-.|-=|.=|+
T Consensus 351 RQdA~~~L~~~~vDlmiVVGG~NSSNT~-~L~eIa~~~g~~sy~Ie~~~eI~ 401 (460)
T PLN02821 351 RQDAMYKLVEEKLDLMLVVGGWNSSNTS-HLQEIAEHKGIPSYWIDSEERIG 401 (460)
T ss_pred HHHHHHHHhhcCCCEEEEECCCCCccHH-HHHHHHHHhCCCEEEECCHHHcC
Confidence 4566666755679999999999998764 47777777776655555566565
No 200
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=28.09 E-value=1.4e+02 Score=30.09 Aligned_cols=47 Identities=11% Similarity=0.248 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeec
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (441)
+++.+..|-+ .+|.++||||.-|-. ..+|++-+++.+.+.-.|-=|.
T Consensus 199 RQ~a~~~La~-~vD~miVIGg~~SsN-T~kL~eia~~~~~~t~~Ie~~~ 245 (281)
T PF02401_consen 199 RQEAARELAK-EVDAMIVIGGKNSSN-TRKLAEIAKEHGKPTYHIETAD 245 (281)
T ss_dssp HHHHHHHHHC-CSSEEEEES-TT-HH-HHHHHHHHHHCTTCEEEESSGG
T ss_pred HHHHHHHHHh-hCCEEEEecCCCCcc-HHHHHHHHHHhCCCEEEeCCcc
Confidence 5666677754 699999999999965 5778888888775533333333
No 201
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=28.05 E-value=1.2e+02 Score=27.89 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=29.4
Q ss_pred HHHhCCCEEEEEcCCCchHH---HHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHH
Q 013518 176 IQDRGINQVYIIGGDGTQKG---AAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEA 239 (441)
Q Consensus 176 l~~~~Id~LvvIGGdgs~~~---a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~ 239 (441)
+...++|++++-||.++... ..++.+++.+++ +||.|| |.|+.......
T Consensus 35 ~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~--~PvlGI-------------C~G~Q~l~~~~ 86 (178)
T cd01744 35 ILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKK--IPIFGI-------------CLGHQLLALAL 86 (178)
T ss_pred HhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCC--CCEEEE-------------CHHHHHHHHHc
Confidence 34457999999999876433 233444444333 456665 77776555443
No 202
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=28.04 E-value=4e+02 Score=24.88 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
....++.|...++|++++++.+.+... .+.+++++ +|+|.+
T Consensus 44 ~~~~~~~l~~~~vdgiii~~~~~~~~~----~~~l~~~~--iPvv~~ 84 (268)
T cd06273 44 EYAQARKLLERGVDGLALIGLDHSPAL----LDLLARRG--VPYVAT 84 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHH----HHHHHhCC--CCEEEE
Confidence 346677888889999999987654322 23344445 556664
No 203
>PRK05261 putative phosphoketolase; Provisional
Probab=27.61 E-value=5.6e+02 Score=29.83 Aligned_cols=178 Identities=20% Similarity=0.243 Sum_probs=0.0
Q ss_pred ccccCCcccccccCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccc-----------ccccccCCeeeC
Q 013518 76 FRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGG-----------YRGFYSKNTINL 144 (441)
Q Consensus 76 f~~~~~r~~~~~~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G-----------~~GL~~~~~~~L 144 (441)
|.+..|--+-.+.++.+|--.+-=.|-|||+|-+-..+.+-..+ +.-..+|-.-.| .+|=+..-+-++
T Consensus 28 yl~~n~ll~~pl~~~~~K~r~~GHwGt~pgln~vyahln~li~~-~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~i 106 (785)
T PRK05261 28 YLRDNPLLREPLKPEHVKPRLLGHWGTTPGLNFIYAHLNRLIRK-YDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEI 106 (785)
T ss_pred HHhcCcccCCCCCHHHCCcccCCCCCCcHHHHHHHHHHHHHHhh-cCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCC
Q ss_pred Chhh--hhccc---------------cccccccccccCCCCHHHHHHHHHHhCCCEEEEEcCCCchHHH-----------
Q 013518 145 TPKV--VNDIH---------------KRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGA----------- 196 (441)
Q Consensus 145 ~~~~--v~~~~---------------~~GGs~LGssR~~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a----------- 196 (441)
+.++ +.... .++|.+-.|+--+..+...+-.-.+..=...+|+-|||.....
T Consensus 107 s~d~~gl~~lfrqfs~pgg~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~ 186 (785)
T PRK05261 107 TQDEEGMARLFKQFSFPGGIPSHAAPETPGSIHEGGELGYSLSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKF 186 (785)
T ss_pred CccHHHHHHHHHhccCCCCcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHcCCCCEEEEEECcCchhhhhhHHHhhhhhh
Q ss_pred -------------------------------HHHHHHHHHcCCCceEEEeecccc-CCCCCCCCCCChhhHHHHHHHHHH
Q 013518 197 -------------------------------AVIYEEIRQRGLKVAVAGIPKTID-NDIPVIDKSFGFDTAVEEAQRAIN 244 (441)
Q Consensus 197 -------------------------------~~L~~~~~~~~~~i~vvgIPkTID-NDi~~td~s~GfdTA~~~~~~~i~ 244 (441)
..|.+.++.+|++ |-.|| ||+.-+... +..|++.+.+.|.
T Consensus 187 ~~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~------~i~VDG~D~~av~~a--~a~al~~~i~~i~ 258 (785)
T PRK05261 187 LNPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYE------PYFVEGDDPADMHQE--MAAALDTAIEEIR 258 (785)
T ss_pred cccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCe------eEEECCCCHHHHHHH--HHHHHHHHHHHHH
Q ss_pred HHHHhhhcCCce------EEEEEe
Q 013518 245 AAHVEAESIENG------IGVVKL 262 (441)
Q Consensus 245 ~i~~~a~s~~~r------v~iVEv 262 (441)
.|+..|...... +.|+++
T Consensus 259 ~iq~~Ar~~~~~~~P~wp~Ii~rT 282 (785)
T PRK05261 259 AIQKEAREGGDTTRPRWPMIVLRT 282 (785)
T ss_pred HHHHHHHhCCCCCCCCceEEEEEC
No 204
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=27.20 E-value=72 Score=31.46 Aligned_cols=50 Identities=26% Similarity=0.399 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchH------------HHHHHHHHHHHc---CCCceEEEee
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQK------------GAAVIYEEIRQR---GLKVAVAGIP 216 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~------------~a~~L~~~~~~~---~~~i~vvgIP 216 (441)
..++..+..+...||+.+++++||-.-. .|..|.+.+++. ++.+.+.+.|
T Consensus 73 ~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP 137 (274)
T cd00537 73 IELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYP 137 (274)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCC
Confidence 4577888889999999999999986543 367777776653 4555555555
No 205
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=27.18 E-value=2.6e+02 Score=21.09 Aligned_cols=51 Identities=22% Similarity=0.478 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
...+++++..++.|++++.+-= -+++.+...+.+.+++.+++ .++|+--++
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTD-h~~~~~~~~~~~~~~~~gi~-~i~G~E~~~ 65 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITD-HGNLFGAVEFYKAAKKAGIK-PIIGLEANI 65 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEee-CCcccCHHHHHHHHHHcCCe-EEEEEEEEe
Confidence 3578999999999999876654 44788888888888777875 366665544
No 206
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=26.87 E-value=53 Score=32.57 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCC
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (441)
..++.+.++..+.|.++-+||--....+...+.. .+++.+.||-+.+||
T Consensus 64 ~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~-----~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 64 VEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFE-----LGIPFISVPTAASHD 112 (250)
T ss_dssp HHHHHTTS--TT--EEEEEESHHHHHHHHHHHHH-----HT--EEEEES--SSG
T ss_pred HHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHh-----cCCCEEEeccccccc
Confidence 5567777777899999999997666655555443 246799999999998
No 207
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=26.80 E-value=1.5e+02 Score=30.24 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCC-CCCCC---CCCChhhHHHHHHHHH
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND-IPVID---KSFGFDTAVEEAQRAI 243 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND-i~~td---~s~GfdTA~~~~~~~i 243 (441)
++++.+..|-+ .+|.++||||..|-.+ .+|++-+++.+.+.-.|-=+.=||-+ +.+.+ -|=|..|=-..+-+.+
T Consensus 199 ~RQ~a~~~La~-~vD~miVVGg~~SsNT-~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 199 NRQEAVKELAP-QADLVIVVGSKNSSNS-NRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred HHHHHHHHHHh-hCCEEEEECCCCCccH-HHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHH
Confidence 35666666655 6999999999999875 55778787776555555555555522 12211 2344444444444444
Q ss_pred HHHH
Q 013518 244 NAAH 247 (441)
Q Consensus 244 ~~i~ 247 (441)
+.+.
T Consensus 277 ~~l~ 280 (298)
T PRK01045 277 ARLK 280 (298)
T ss_pred HHHH
Confidence 4443
No 208
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=26.64 E-value=5.5e+02 Score=25.02 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
....++.|..+++|++++...+... .....+++++.+ +|||.+
T Consensus 46 q~~~i~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~g--iPvV~~ 88 (303)
T cd01539 46 QNEQIDTALAKGVDLLAVNLVDPTA--AQTVINKAKQKN--IPVIFF 88 (303)
T ss_pred HHHHHHHHHHcCCCEEEEecCchhh--HHHHHHHHHHCC--CCEEEe
Confidence 4567888999999999998866432 123334454445 456654
No 209
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.55 E-value=3.5e+02 Score=25.36 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
.+.++.+...++|++++.+.+.... ....+++.+++ +|+|.+
T Consensus 46 ~~~~~~l~~~~vdgiii~~~~~~~~--~~~l~~~~~~~--iPvV~~ 87 (275)
T cd06317 46 AAQVEDLIAQKVDGIILWPTDGQAY--IPGLRKAKQAG--IPVVIT 87 (275)
T ss_pred HHHHHHHHHcCCCEEEEecCCcccc--HHHHHHHHHCC--CcEEEe
Confidence 4567777788999999988764321 11223444445 456633
No 210
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=26.43 E-value=1.1e+02 Score=26.89 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEee
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (441)
+.+.+.+.+++++||.+++-=-+.......++.+++++.+++ |-.||
T Consensus 129 ~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~--v~~vP 175 (175)
T PF13727_consen 129 DLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVR--VRVVP 175 (175)
T ss_dssp -GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-E--EEE--
T ss_pred CHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCE--EEEeC
Confidence 366788999999999999988887788788888888877654 55455
No 211
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=26.26 E-value=1.9e+02 Score=30.54 Aligned_cols=109 Identities=15% Similarity=0.237 Sum_probs=65.3
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEc------ccccccccCCeeeCChhhhhccccccccccccc-c
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGID------GGYRGFYSKNTINLTPKVVNDIHKRGGTILGTS-R 164 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~------~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGss-R 164 (441)
+||+|++ |-++| +-.-..+++.++..|+..+.+|+- .|++-|++ +++-.+-++.. .|+-= |
T Consensus 2 ~ki~i~A--GE~SG-DllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~-----~~elsvmGf~E----VL~~lp~ 69 (381)
T COG0763 2 LKIALSA--GEASG-DLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFD-----MEELSVMGFVE----VLGRLPR 69 (381)
T ss_pred ceEEEEe--cccch-hhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccC-----HHHHHHhhHHH----HHHHHHH
Confidence 4677776 23333 334566777777778888999986 45444432 22222333221 12210 0
Q ss_pred CCCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 165 GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 165 ~~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
...-+.++++++.+.+.|.|+.|=- ..--..+++.+++.+.++++|.-
T Consensus 70 llk~~~~~~~~i~~~kpD~~i~IDs---PdFnl~vak~lrk~~p~i~iihY 117 (381)
T COG0763 70 LLKIRRELVRYILANKPDVLILIDS---PDFNLRVAKKLRKAGPKIKIIHY 117 (381)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC---CCCchHHHHHHHHhCCCCCeEEE
Confidence 1123568889999999999999843 33345667777778877777753
No 212
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=26.20 E-value=67 Score=35.31 Aligned_cols=63 Identities=19% Similarity=0.339 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhC---CCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHH
Q 013518 169 TSKIVDSIQDRG---INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 237 (441)
Q Consensus 169 ~~~i~~~l~~~~---Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~ 237 (441)
.+++.+.|.+.+ .|.++.|||==.+..|..++.-. .+| +++|.||-|.- +.+|-|+|.-|++|
T Consensus 255 v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y-~rG--i~~i~vPTTll---A~vDss~ggkt~in 320 (542)
T PRK14021 255 ANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATW-MRG--IRYVNCPTSLL---AMVDASTGGKTGIN 320 (542)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHH-HcC--CCEEEeCChHH---hhhccccCCceEEE
Confidence 456678888884 89999999988888777665422 245 66999999962 34455556555543
No 213
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=25.80 E-value=6.3e+02 Score=24.62 Aligned_cols=68 Identities=4% Similarity=0.011 Sum_probs=42.2
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (441)
...||++...-..|-.+.+++++.+.+.+ ++ .++.-+ .+........
T Consensus 61 ~~~Igvv~~~~~~~~~~~l~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~ 107 (328)
T PRK11303 61 TRSIGLIIPDLENTSYARIAKYLERQARQ-RG-YQLLIA-------------------------------CSDDQPDNEM 107 (328)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------eCCCCHHHHH
Confidence 34899998665667788888888776643 22 222110 0111111234
Q ss_pred HHHHHHHHhCCCEEEEEcCCC
Q 013518 171 KIVDSIQDRGINQVYIIGGDG 191 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdg 191 (441)
++++.|...++|++++.+.+.
T Consensus 108 ~~~~~l~~~~vdgiIi~~~~~ 128 (328)
T PRK11303 108 RCAEHLLQRQVDALIVSTSLP 128 (328)
T ss_pred HHHHHHHHcCCCEEEEcCCCC
Confidence 677788889999999988754
No 214
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=25.37 E-value=1.4e+02 Score=34.79 Aligned_cols=32 Identities=13% Similarity=0.303 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHH
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY 200 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~ 200 (441)
.+++++.+++.++|.+|-|||--+++.|..++
T Consensus 528 v~~~~~~~~~~~~D~IIaiGGGSviD~AK~ia 559 (862)
T PRK13805 528 VRKGAELMRSFKPDTIIALGGGSPMDAAKIMW 559 (862)
T ss_pred HHHHHHHHHhcCCCEEEEeCCchHHHHHHHHH
Confidence 57888999999999999999999999887775
No 215
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=24.63 E-value=5.8e+02 Score=23.77 Aligned_cols=67 Identities=9% Similarity=0.106 Sum_probs=43.3
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHH
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (441)
.|||+...=+.|..+.+++++-+.+.. ++ .++.-+ -+..........
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~~~ 47 (265)
T cd06291 1 LIGLIVPTISNPFFSELARAVEKELYK-KG-YKLILC-------------------------------NSDNDPEKEREY 47 (265)
T ss_pred CEEEEECCCCChhHHHHHHHHHHHHHH-CC-CeEEEe-------------------------------cCCccHHHHHHH
Confidence 377888776788899999999877753 33 233210 011111223466
Q ss_pred HHHHHHhCCCEEEEEcCCCc
Q 013518 173 VDSIQDRGINQVYIIGGDGT 192 (441)
Q Consensus 173 ~~~l~~~~Id~LvvIGGdgs 192 (441)
++.+...++|++++.+.+..
T Consensus 48 i~~~~~~~~dgiii~~~~~~ 67 (265)
T cd06291 48 LEMLRQNQVDGIIAGTHNLG 67 (265)
T ss_pred HHHHHHcCCCEEEEecCCcC
Confidence 78889999999999887644
No 216
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=24.51 E-value=5.7e+02 Score=24.33 Aligned_cols=63 Identities=14% Similarity=0.098 Sum_probs=42.1
Q ss_pred eEEEEccC---CCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCH
Q 013518 93 HACIVTCG---GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (441)
Q Consensus 93 ~iaIl~sG---G~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~ 169 (441)
|||++... -.-|-.+.++.++.+.+.+ ++ .++.-. .+....+.
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~-~g-y~~~i~--------------------------------~~~~~~~~ 46 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKE-LG-IEYKYV--------------------------------ESKSDADY 46 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHH-cC-CeEEEE--------------------------------ecCCHHHH
Confidence 68888865 3678899999999888753 32 222211 11112234
Q ss_pred HHHHHHHHHhCCCEEEEEcC
Q 013518 170 SKIVDSIQDRGINQVYIIGG 189 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGG 189 (441)
.+.++.|...++|++++.+-
T Consensus 47 ~~~i~~l~~~~vdgiI~~~~ 66 (265)
T cd06354 47 EPNLEQLADAGYDLIVGVGF 66 (265)
T ss_pred HHHHHHHHhCCCCEEEEcCc
Confidence 56788899999999999864
No 217
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.49 E-value=3e+02 Score=25.80 Aligned_cols=90 Identities=12% Similarity=0.230 Sum_probs=62.8
Q ss_pred EEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChh-hhhccccccccccccccCCCCHHHHH
Q 013518 95 CIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPK-VVNDIHKRGGTILGTSRGGHDTSKIV 173 (441)
Q Consensus 95 aIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~-~v~~~~~~GGs~LGssR~~~~~~~i~ 173 (441)
+|+..|-...++-..++.+|+ +|+|. |-+.. .-+|. .+..|.. ||..+--.=++.....+.
T Consensus 34 gil~~~e~De~v~esv~dVv~----rwGG~--F~v~~-----------~~nw~~~i~~wk~-gG~vvHLTMYG~~i~dv~ 95 (179)
T COG1303 34 GILLDGEEDEKVVESVEDVVE----RWGGP--FFVKF-----------GVNWRKVIREWKE-GGIVVHLTMYGLNIDDVI 95 (179)
T ss_pred eEEEcCcccHHHHHHHHHHHH----hcCCC--EEEEE-----------cccHHHHHHHhhc-CCEEEEEEecCCcchhhh
Confidence 477777667778788888885 36763 32322 23555 5677887 896655444455667778
Q ss_pred HHHHHhCCCEEEEEcCCCchHHHHHHHHH
Q 013518 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEE 202 (441)
Q Consensus 174 ~~l~~~~Id~LvvIGGdgs~~~a~~L~~~ 202 (441)
+.|++.+=+-|+++|+.---.-+..|+++
T Consensus 96 ~ei~~~~k~~lvvVGaeKVp~evYelADy 124 (179)
T COG1303 96 DEIRESKKDVLVVVGAEKVPGEVYELADY 124 (179)
T ss_pred HHHHhcCCcEEEEEccccCCHHHhhhccc
Confidence 88888888899999999888777777753
No 218
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.26 E-value=4.4e+02 Score=26.31 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=41.4
Q ss_pred cccccccccccccC---CCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEE
Q 013518 152 IHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (441)
Q Consensus 152 ~~~~GGs~LGssR~---~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (441)
+...|+++..+.+. ..++...+..|++.+-|.+++.+.... +..+.+.+++.|+++++++
T Consensus 162 ~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~~---~~~~~~~~~~~g~~~~~~~ 224 (347)
T cd06335 162 LAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGPE---GAQIANGMAKLGWKVPIIS 224 (347)
T ss_pred HHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecChH---HHHHHHHHHHcCCCCcEec
Confidence 44557776665554 357888999999999999988874332 3345666777788766554
No 219
>PRK04155 chaperone protein HchA; Provisional
Probab=24.11 E-value=7.2e+02 Score=25.09 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=25.7
Q ss_pred HHHHHHHHH--HhCCCEEEEEcCCCchHH------HHHHHHHHHHcC
Q 013518 169 TSKIVDSIQ--DRGINQVYIIGGDGTQKG------AAVIYEEIRQRG 207 (441)
Q Consensus 169 ~~~i~~~l~--~~~Id~LvvIGGdgs~~~------a~~L~~~~~~~~ 207 (441)
.+.+.+... ..+.|++|+-||-|.+.. +.+|.+++.+.+
T Consensus 134 l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~ 180 (287)
T PRK04155 134 LADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDND 180 (287)
T ss_pred HHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcC
Confidence 455555444 467899999999998654 344555555544
No 220
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=24.00 E-value=6.1e+02 Score=23.82 Aligned_cols=92 Identities=8% Similarity=0.040 Sum_probs=50.5
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHH
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKI 172 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i 172 (441)
||||+...-..|-...++.++-+.+.+ ++ .++.-.. ..+.+......+.
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-----------------------------~~~~~~~~~~~~~ 49 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKK-LG-VSVDIQA-----------------------------APSEGDQQGQLSI 49 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHH-hC-CeEEEEc-----------------------------cCCCCCHHHHHHH
Confidence 578888655667777777777766643 22 1221000 0011111224567
Q ss_pred HHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 173 ~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
++.|...++|++++.+.+.+. .....+++.+++ +|||.+-..+
T Consensus 50 i~~l~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~~~~~ 92 (275)
T cd06320 50 AENMINKGYKGLLFSPISDVN--LVPAVERAKKKG--IPVVNVNDKL 92 (275)
T ss_pred HHHHHHhCCCEEEECCCChHH--hHHHHHHHHHCC--CeEEEECCCC
Confidence 888889999999887654331 112234454445 5677664433
No 221
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=23.91 E-value=67 Score=29.50 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=30.0
Q ss_pred ccCCCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeecc
Q 013518 163 SRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (441)
Q Consensus 163 sR~~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (441)
-|+++.+.+.++++++.+++.+|.+-|-...-. -.++-. -..||||+|-.
T Consensus 38 HR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lp-gvva~~-----t~~PVIgvP~~ 87 (150)
T PF00731_consen 38 HRTPERLLEFVKEYEARGADVIIAVAGMSAALP-GVVASL-----TTLPVIGVPVS 87 (150)
T ss_dssp TTSHHHHHHHHHHTTTTTESEEEEEEESS--HH-HHHHHH-----SSS-EEEEEE-
T ss_pred cCCHHHHHHHHHHhccCCCEEEEEECCCcccch-hhheec-----cCCCEEEeecC
Confidence 455556677777777778888887766644332 223322 35789999953
No 222
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=23.49 E-value=2.2e+02 Score=28.18 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
..++.++.+++.+++++++- |........+.+.++++|++.-.+.-|.|=
T Consensus 103 G~e~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~ 152 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNAD 152 (256)
T ss_pred hHHHHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 35778888888889888888 667777777888888888776556666663
No 223
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=23.24 E-value=5.5e+02 Score=27.49 Aligned_cols=102 Identities=25% Similarity=0.297 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe-eccccCCCCCCCCCCChh--hHHHHHHHHHHH
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI-PKTIDNDIPVIDKSFGFD--TAVEEAQRAINA 245 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI-PkTIDNDi~~td~s~Gfd--TA~~~~~~~i~~ 245 (441)
..+.++.+++.-.+..++.|+--|...|..+.+ .|.+.-.||+ |.+|.-.-..++ +|.. ||+..+++++.
T Consensus 252 ~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~----aGad~i~vg~g~G~~~~t~~~~~--~g~p~~~~i~~~~~~~~- 324 (450)
T TIGR01302 252 VIDSIKEIKKTYPDLDIIAGNVATAEQAKALID----AGADGLRVGIGPGSICTTRIVAG--VGVPQITAVYDVAEYAA- 324 (450)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH----hCCCEEEECCCCCcCCccceecC--CCccHHHHHHHHHHHHh-
Confidence 345566666654577777777788888777765 3766545565 766643211111 3333 44444444332
Q ss_pred HHHhhhcCCceEEEEEecC--CCccHHHHHHhhccCCCCEEEcCCC
Q 013518 246 AHVEAESIENGIGVVKLMG--RYCGFIAMYATLGSRDVDCCLIPES 289 (441)
Q Consensus 246 i~~~a~s~~~rv~iVEvMG--r~~G~LA~~~aLA~~~ad~iliPE~ 289 (441)
.. ++-|+ ..| |+.|.++ -|||. ||+.|.+-..
T Consensus 325 ------~~--~vpvi-adGGi~~~~di~--kAla~-GA~~V~~G~~ 358 (450)
T TIGR01302 325 ------QS--GIPVI-ADGGIRYSGDIV--KALAA-GADAVMLGSL 358 (450)
T ss_pred ------hc--CCeEE-EeCCCCCHHHHH--HHHHc-CCCEEEECch
Confidence 11 23332 334 4566665 55666 6888887543
No 224
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=23.11 E-value=2.2e+02 Score=27.40 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=55.9
Q ss_pred cCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC---------------CCHHHHHHHHHH--hCCCE
Q 013518 121 YGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG---------------HDTSKIVDSIQD--RGINQ 183 (441)
Q Consensus 121 ~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~---------------~~~~~i~~~l~~--~~Id~ 183 (441)
+...++|...+| +|.+-+.. .-+...+|+-|.+..+. ...++|++.+++ .+...
T Consensus 4 ~~i~EiF~siQG-EG~~~Gr~--------~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~~~~~ 74 (212)
T COG0602 4 YRIVEIFDSIQG-EGKNIGRP--------SVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGYKARG 74 (212)
T ss_pred eeEEEEEEEEec-Ccccccce--------eEEEEcCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCCCcce
Confidence 344567766666 44433331 23456788888776652 136789999998 57778
Q ss_pred EEEEcCCCchH-HHHHHHHHHHHcCCCc
Q 013518 184 VYIIGGDGTQK-GAAVIYEEIRQRGLKV 210 (441)
Q Consensus 184 LvvIGGdgs~~-~a~~L~~~~~~~~~~i 210 (441)
+.+-||+-.+. ....|.+.+++.|+++
T Consensus 75 V~lTGGEP~~~~~l~~Ll~~l~~~g~~~ 102 (212)
T COG0602 75 VSLTGGEPLLQPNLLELLELLKRLGFRI 102 (212)
T ss_pred EEEeCCcCCCcccHHHHHHHHHhCCceE
Confidence 99999999664 5788888888878763
No 225
>PLN02204 diacylglycerol kinase
Probab=22.89 E-value=80 Score=35.32 Aligned_cols=70 Identities=23% Similarity=0.264 Sum_probs=40.9
Q ss_pred cEEEEEcccccccccCCeeeCChhhhhccccccc---cccccccCCCCHHHHHHH---HHHhCCCEEEEEcCCCchHHHH
Q 013518 124 SKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGG---TILGTSRGGHDTSKIVDS---IQDRGINQVYIIGGDGTQKGAA 197 (441)
Q Consensus 124 ~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GG---s~LGssR~~~~~~~i~~~---l~~~~Id~LvvIGGdgs~~~a~ 197 (441)
.+++-|.|=+.|=- .- .-.|+.|..+....| .++-|.|.+.-. .+++. +...+.|++|++||||++..+.
T Consensus 160 k~llVivNP~sGkg--~~-~~~~~~V~p~f~~a~i~~~v~~T~~aghA~-d~~~~~~~~~l~~~D~VVaVGGDGt~nEVl 235 (601)
T PLN02204 160 KNLLVFVHPLSGKG--SG-SRTWETVSPIFIRAKVKTKVIVTERAGHAF-DVMASISNKELKSYDGVIAVGGDGFFNEIL 235 (601)
T ss_pred ceEEEEECCCCCCc--ch-HHHHHHHHHHHHHcCCeEEEEEecCcchHH-HHHHHHhhhhccCCCEEEEEcCccHHHHHH
Confidence 36677777665522 11 123556666655554 245566653322 33332 2356789999999999987654
No 226
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=22.71 E-value=1.1e+02 Score=30.50 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCc----------hHHHHHHHHHHHHc--CCCceEEEeec
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGT----------QKGAAVIYEEIRQR--GLKVAVAGIPK 217 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs----------~~~a~~L~~~~~~~--~~~i~vvgIPk 217 (441)
.++..+..+...||+.+++++||-. +..|..|.+.+++. .+.|-+.+.|-
T Consensus 74 ~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Pe 135 (272)
T TIGR00676 74 EIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPE 135 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 4667777889999999999999876 23356666665553 34555555554
No 227
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.64 E-value=8.1e+02 Score=26.13 Aligned_cols=123 Identities=22% Similarity=0.293 Sum_probs=67.2
Q ss_pred hhhhccccccccccc--cccC-CCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe-eccccCC
Q 013518 147 KVVNDIHKRGGTILG--TSRG-GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI-PKTIDND 222 (441)
Q Consensus 147 ~~v~~~~~~GGs~LG--ssR~-~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI-PkTIDND 222 (441)
+.++.+...|=.+|= ++.. .....++++.+++.-=+.+++.|+-.|...|..+.+ .|.+.-.+|+ |.||.--
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~----aGaD~I~vG~g~Gs~c~t 231 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS----VGADCLKVGIGPGSICTT 231 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH----cCCCEEEECCCCCcCCcc
Confidence 345555555544443 3332 345667788887754467788888899998887765 4776545565 6555321
Q ss_pred CCCCCCCCChh--hHHHHHHHHHHHHHHhhhcCCceEEEEEecC--CCccHHHHHHhhccCCCCEEEcCC
Q 013518 223 IPVIDKSFGFD--TAVEEAQRAINAAHVEAESIENGIGVVKLMG--RYCGFIAMYATLGSRDVDCCLIPE 288 (441)
Q Consensus 223 i~~td~s~Gfd--TA~~~~~~~i~~i~~~a~s~~~rv~iVEvMG--r~~G~LA~~~aLA~~~ad~iliPE 288 (441)
-..+ ..|.. ||+..+.+.++. . .+-|+ ..| |+.|.++ -||+. |||.|.+--
T Consensus 232 r~~~--g~g~p~ltai~~v~~~~~~-------~--~vpVI-AdGGI~~~~Di~--KALal-GA~aVmvGs 286 (404)
T PRK06843 232 RIVA--GVGVPQITAICDVYEVCKN-------T--NICII-ADGGIRFSGDVV--KAIAA-GADSVMIGN 286 (404)
T ss_pred eeec--CCCCChHHHHHHHHHHHhh-------c--CCeEE-EeCCCCCHHHHH--HHHHc-CCCEEEEcc
Confidence 1101 12332 455555443321 1 12232 445 4556665 45666 688877643
No 228
>PTZ00063 histone deacetylase; Provisional
Probab=22.47 E-value=3.2e+02 Score=29.46 Aligned_cols=97 Identities=12% Similarity=0.186 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHHHHHHHHhCCCEEEEE
Q 013518 108 TVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYII 187 (441)
Q Consensus 108 a~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i~~~l~~~~Id~LvvI 187 (441)
.+.+.++..+.+.++ .+++-+.-|+.++..+.+-.++ | +..++.++++.++++++-.+++.
T Consensus 236 ~~f~~ii~~~i~~f~-Pd~IvvqaG~D~~~~DpLg~l~--------------L----t~~g~~~~~~~~~~~~~pil~l~ 296 (436)
T PTZ00063 236 DLFKPVISKCVEVYR-PGAIVLQCGADSLTGDRLGRFN--------------L----TIKGHAACVEFVRSLNIPLLVLG 296 (436)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEECCccccCCCCCCCcc--------------c----CHHHHHHHHHHHHhcCCCEEEEe
Confidence 355555554444455 5888899999998766532211 1 11235567888899999988888
Q ss_pred cCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCC
Q 013518 188 GGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDK 228 (441)
Q Consensus 188 GGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~ 228 (441)
||-=+.+...+-..+.- + .+++.|..|+++||..++
T Consensus 297 gGGY~~~~lar~w~~~t--~---~~~~~~~~~~~~iP~~~~ 332 (436)
T PTZ00063 297 GGGYTIRNVARCWAYET--G---VILNKHDEMSDQISLNDY 332 (436)
T ss_pred CccCCchHHHHHHHHHH--H---HHhCCcccCCccCCCCcc
Confidence 76656554333322211 1 156777789999997663
No 229
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=22.46 E-value=4.1e+02 Score=25.86 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=55.6
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhh-ccccccccccccccCC---CCHHHHHHHHHHhC
Q 013518 105 GLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVN-DIHKRGGTILGTSRGG---HDTSKIVDSIQDRG 180 (441)
Q Consensus 105 GmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~-~~~~~GGs~LGssR~~---~~~~~i~~~l~~~~ 180 (441)
.-....+.++..+.+.++..+|.-+.... .+-.-....+. .+...|.++.++...+ .++...+..+++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~~------~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~ 190 (334)
T cd06342 117 RDDQQGPAAAKYAVETLKAKKVAIIDDKT------AYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAAN 190 (334)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEEeCCc------chhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcC
Confidence 33455566666554444555555443221 11000111222 2233566666655442 57888999999999
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEE
Q 013518 181 INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (441)
Q Consensus 181 Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (441)
.+.+++.| .+. .+..+.+.+++.|++.++++
T Consensus 191 ~~~vi~~~-~~~--~~~~~~~~~~~~g~~~~~~~ 221 (334)
T cd06342 191 PDAVFFGG-YYP--EAGPLVRQMRQLGLKAPFMG 221 (334)
T ss_pred CCEEEEcC-cch--hHHHHHHHHHHcCCCCcEEe
Confidence 99887655 332 23446677777788766654
No 230
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=22.40 E-value=6.2e+02 Score=23.37 Aligned_cols=84 Identities=10% Similarity=0.078 Sum_probs=49.8
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHHH
Q 013518 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (441)
Q Consensus 94 iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i~ 173 (441)
|||+...-..|-.+.+++++.+.+.+ ++ ..+.-+. +........+++
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~~~~~~ 48 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARA-AG-YSLLLAT-------------------------------TDYDAEREADAV 48 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHH-CC-CEEEEee-------------------------------CCCCHHHHHHHH
Confidence 67777655678888899998887753 33 2332111 001112234677
Q ss_pred HHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 174 ~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
+.|...++|++++..++.... ...+.+.+.++ ++|.+
T Consensus 49 ~~l~~~~vdgiii~~~~~~~~---~~~~~~~~~~i--pvV~~ 85 (266)
T cd06282 49 ETLLRQRVDGLILTVADAATS---PALDLLDAERV--PYVLA 85 (266)
T ss_pred HHHHhcCCCEEEEecCCCCch---HHHHHHhhCCC--CEEEE
Confidence 778889999999987765322 12344444554 45544
No 231
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=22.36 E-value=1.2e+02 Score=28.33 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=25.4
Q ss_pred HHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 174 DSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 174 ~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
+.+++.+.|++|+-||-|+-.......+.++...-++|+.||
T Consensus 37 ~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI 78 (187)
T PRK08007 37 ADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV 78 (187)
T ss_pred HHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE
Confidence 345567899999999999876543222222222224556665
No 232
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=22.14 E-value=4.8e+02 Score=26.60 Aligned_cols=62 Identities=23% Similarity=0.415 Sum_probs=42.8
Q ss_pred hccccccccccccccC---CCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEE
Q 013518 150 NDIHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (441)
Q Consensus 150 ~~~~~~GGs~LGssR~---~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (441)
+.+...|+.+.+..+. ..|+...+..|+..+-|.+++ +|++. . +..+.+.+++.|++.++++
T Consensus 183 ~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~-~~~~~-~-~~~~~k~~~~~G~~~~~i~ 247 (369)
T PRK15404 183 DGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYY-GGYHP-E-MGQILRQAREAGLKTQFMG 247 (369)
T ss_pred HHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEE-CCCch-H-HHHHHHHHHHCCCCCeEEe
Confidence 3456678887776554 358899999999999998765 44443 2 2335567777788876664
No 233
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=22.04 E-value=6.5e+02 Score=23.42 Aligned_cols=67 Identities=10% Similarity=0.204 Sum_probs=41.7
Q ss_pred EEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHHHH
Q 013518 94 ACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIV 173 (441)
Q Consensus 94 iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~i~ 173 (441)
|||+...-..|=.+.++.++-+.+.+ ++ .++. ++-+........+.+
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~-------------------------------~~~~~~~~~~~~~~i 48 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYR-QG-YNLI-------------------------------LCNTEGDPERQRSYL 48 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHH-cC-CEEE-------------------------------EEeCCCChHHHHHHH
Confidence 67777665667677777777666642 22 2221 011122223345778
Q ss_pred HHHHHhCCCEEEEEcCCCch
Q 013518 174 DSIQDRGINQVYIIGGDGTQ 193 (441)
Q Consensus 174 ~~l~~~~Id~LvvIGGdgs~ 193 (441)
+.|..+++|++++.+.+...
T Consensus 49 ~~l~~~~vdgiii~~~~~~~ 68 (269)
T cd06275 49 RMLAQKRVDGLLVMCSEYDQ 68 (269)
T ss_pred HHHHHcCCCEEEEecCCCCh
Confidence 88999999999999977553
No 234
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=21.94 E-value=1.1e+02 Score=24.88 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=26.6
Q ss_pred ccccccccCCCCHHHHHHHHHHhCCCEEEEEcCCCchH
Q 013518 157 GTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQK 194 (441)
Q Consensus 157 Gs~LGssR~~~~~~~i~~~l~~~~Id~LvvIGGdgs~~ 194 (441)
+-+|=+. . .-...+.+.|+++++..+++|||.++..
T Consensus 51 ~PIll~~-~-~l~~~~~~~l~~~~~~~v~iiGg~~~is 86 (92)
T PF04122_consen 51 APILLVN-N-SLPSSVKAFLKSLNIKKVYIIGGEGAIS 86 (92)
T ss_pred CeEEEEC-C-CCCHHHHHHHHHcCCCEEEEECCCCccC
Confidence 3344444 2 2237788889999999999999999864
No 235
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=21.92 E-value=66 Score=30.86 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCchHHHH
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGTQKGAA 197 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs~~~a~ 197 (441)
...++.|+++||| |+.||+.|+.-|.
T Consensus 9 p~~~~vf~~~gid--~cc~g~~~l~~a~ 34 (216)
T TIGR03652 9 PRAARIFRKYGID--FCCGGNVSLAEAC 34 (216)
T ss_pred ccHHHHHHHcCCC--ccCCCcchHHHHH
Confidence 4677899999999 9999988877554
No 236
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=21.91 E-value=1.3e+02 Score=30.43 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=19.3
Q ss_pred cCCceEEEEEecCC-CccHHHHHHh
Q 013518 252 SIENGIGVVKLMGR-YCGFIAMYAT 275 (441)
Q Consensus 252 s~~~rv~iVEvMGr-~~G~LA~~~a 275 (441)
...++|.+|=|||- |.||++|.-.
T Consensus 19 ~~gk~Vg~VPTMG~LH~GHlsLVr~ 43 (285)
T COG0414 19 KEGKRVGLVPTMGNLHEGHLSLVRR 43 (285)
T ss_pred HcCCEEEEEcCCcccchHHHHHHHH
Confidence 34578999999997 7899998543
No 237
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=21.89 E-value=5.6e+02 Score=24.98 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=56.3
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCe-eeCChhhhhccccccccccccccCC---CCHHHHHHHHHHh
Q 013518 104 PGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT-INLTPKVVNDIHKRGGTILGTSRGG---HDTSKIVDSIQDR 179 (441)
Q Consensus 104 pGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~v~~~~~~GGs~LGssR~~---~~~~~i~~~l~~~ 179 (441)
+.-....+.+++.+.+ .+..++.-+..- ..+ ...-....+.+...|+.+....... .++...+..+++.
T Consensus 118 ~~~~~~~~~~~~~l~~-~g~~~v~~l~~~------~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~ 190 (336)
T cd06326 118 ASYADEIAAIVRHLVT-LGLKRIAVFYQD------DAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAAA 190 (336)
T ss_pred CChHHHHHHHHHHHHH-hCCceEEEEEec------CcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhc
Confidence 4445566777777653 344455444211 111 0111112233455666655544332 4677888888888
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
+.|++|+.+-.. .+..+.+.+++.|++++++++
T Consensus 191 ~~dav~~~~~~~---~a~~~i~~~~~~G~~~~~~~~ 223 (336)
T cd06326 191 RPQAVIMVGAYK---AAAAFIRALRKAGGGAQFYNL 223 (336)
T ss_pred CCCEEEEEcCcH---HHHHHHHHHHhcCCCCcEEEE
Confidence 899887766322 234455677778988777754
No 238
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=21.78 E-value=2.3e+02 Score=25.60 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHh--CCCEEEEEcCCCchHH-HHHHHHHHHHcCCCc
Q 013518 168 DTSKIVDSIQDR--GINQVYIIGGDGTQKG-AAVIYEEIRQRGLKV 210 (441)
Q Consensus 168 ~~~~i~~~l~~~--~Id~LvvIGGdgs~~~-a~~L~~~~~~~~~~i 210 (441)
+.+++.+.+++. .++++.+-||. -+.. ...|.++++++|+++
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i 91 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE-WNREALLSLLKIFKEKGLKT 91 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh-cCHHHHHHHHHHHHHCCCCE
Confidence 456666666665 47899999999 5433 556777777777654
No 239
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=21.71 E-value=6.7e+02 Score=23.48 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=52.1
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-CCHHH
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTSK 171 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~~~ 171 (441)
|||++...-.-|.....++++-+.+.+ +. ..||. -++ ++..+... ....+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~-~~-------~~g~~----~~l-----------------~i~~~~~~~~~~~~ 51 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKE-LK-------KAGLI----SEF-----------------IVTSADGDVAQQIA 51 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHh-hh-------ccCCe----eEE-----------------EEecCCCCHHHHHH
Confidence 688888776778888888888776643 20 00110 000 12222221 22456
Q ss_pred HHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeecc
Q 013518 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (441)
Q Consensus 172 i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (441)
.++.+...++|++++...+... .....+.+.+++ +|||.+-..
T Consensus 52 ~~~~~~~~~vdgiIi~~~~~~~--~~~~l~~~~~~~--iPvv~~~~~ 94 (272)
T cd06300 52 DIRNLIAQGVDAIIINPASPTA--LNPVIEEACEAG--IPVVSFDGT 94 (272)
T ss_pred HHHHHHHcCCCEEEEeCCChhh--hHHHHHHHHHCC--CeEEEEecC
Confidence 7777888899999998876321 122233444444 567876443
No 240
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.53 E-value=2.4e+02 Score=28.39 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=43.9
Q ss_pred cccccccccccccC---CCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEee
Q 013518 152 IHKRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (441)
Q Consensus 152 ~~~~GGs~LGssR~---~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (441)
|...|+.+.+..+. ..|+...+..++.-+-|.++++ +.++- +..+.+.+++.|++.+++++.
T Consensus 172 ~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~-~~~~~--~~~~~~~~~~~G~~~~~~~~~ 236 (357)
T cd06337 172 LADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGF-AIPPD--FATFWRQAAQAGFKPKIVTIA 236 (357)
T ss_pred HHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeC-CCccH--HHHHHHHHHHCCCCCCeEEEe
Confidence 44568888777665 3578999999999999997644 44442 344556777778887777543
No 241
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=21.47 E-value=6.2e+02 Score=23.46 Aligned_cols=46 Identities=30% Similarity=0.559 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
.+....++.|++.+.+.+++.+..+. +..+.+.+++.|+++++++.
T Consensus 177 ~~~~~~~~~l~~~~~~~vi~~~~~~~---~~~~~~~~~~~g~~~~~~~~ 222 (298)
T cd06268 177 TDFSPLIAKLKAAGPDAVFLAGYGGD---AALFLKQAREAGLKVPIVGG 222 (298)
T ss_pred ccHHHHHHHHHhcCCCEEEEccccch---HHHHHHHHHHcCCCCcEEec
Confidence 46778888888888898887765432 34455666667776666653
No 242
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=21.44 E-value=6.6e+02 Score=24.77 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGL 208 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~ 208 (441)
..+.+.+.++++++|.++. +-++.......+.+.+.+.|.
T Consensus 57 ~~~~l~~~~~~~~id~ii~-~~d~~~~~~a~~~~~l~~~g~ 96 (326)
T PRK12767 57 YIDRLLDICKKEKIDLLIP-LIDPELPLLAQNRDRFEEIGV 96 (326)
T ss_pred HHHHHHHHHHHhCCCEEEE-CCcHHHHHHHHHHHHHHHcCc
Confidence 4577888899999997654 444444444445555554443
No 243
>PLN00197 beta-amylase; Provisional
Probab=21.33 E-value=5.8e+02 Score=28.49 Aligned_cols=100 Identities=21% Similarity=0.327 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhCCCEEEE------Ec--CCCc--hHHHHHHHHHHHHcCCCceEEE----------------eeccc---
Q 013518 169 TSKIVDSIQDRGINQVYI------IG--GDGT--QKGAAVIYEEIRQRGLKVAVAG----------------IPKTI--- 219 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~Lvv------IG--Gdgs--~~~a~~L~~~~~~~~~~i~vvg----------------IPkTI--- 219 (441)
+..-++.||..++|++.+ += |.+- ..+=.+|++.+++.|+++++|- +|+=+
T Consensus 129 l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~ 208 (573)
T PLN00197 129 MKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEE 208 (573)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHh
Confidence 556678889999999864 22 3332 3455678888888888877652 55443
Q ss_pred ---cCCCCCCCC---------CCChh--------hHHHHHHHHHHHHHHhhhcC-CceEEEEEecCCCcc
Q 013518 220 ---DNDIPVIDK---------SFGFD--------TAVEEAQRAINAAHVEAESI-ENGIGVVKLMGRYCG 268 (441)
Q Consensus 220 ---DNDi~~td~---------s~Gfd--------TA~~~~~~~i~~i~~~a~s~-~~rv~iVEvMGr~~G 268 (441)
|.||..||. |+|.| |+++...+.+...++.-... ..-|.=||+=.+-||
T Consensus 209 g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP~G 278 (573)
T PLN00197 209 VDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLGDTIVEIQVGMGPAG 278 (573)
T ss_pred hccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCcCc
Confidence 448988885 88888 55999999999988875553 333555555444443
No 244
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=21.24 E-value=4.2e+02 Score=25.72 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=39.7
Q ss_pred cccccccccccC---CCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEE
Q 013518 154 KRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAG 214 (441)
Q Consensus 154 ~~GGs~LGssR~---~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvg 214 (441)
..|++++.+... ..++...+..+++.+.|.+++.+..+.+ ..+.+.+++.|+++++++
T Consensus 162 ~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~~---~~~~~~~~~~g~~~~i~~ 222 (334)
T cd06347 162 KLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTEV---GLIAKQARELGIKVPILG 222 (334)
T ss_pred HcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhhH---HHHHHHHHHcCCCCcEEe
Confidence 456677665443 3578888899999999998887655533 445566666787766654
No 245
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=21.23 E-value=2.5e+02 Score=30.76 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=30.8
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHH
Q 013518 159 ILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAV 198 (441)
Q Consensus 159 ~LGssR~~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~ 198 (441)
+||.-...-|..++.+.|++.+|+.+.++.|+.++.....
T Consensus 207 liG~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~ 246 (513)
T TIGR01861 207 YVGEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRG 246 (513)
T ss_pred EeCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh
Confidence 3443333457899999999999999999999998765543
No 246
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=21.11 E-value=1.1e+02 Score=28.74 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=29.4
Q ss_pred HHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHH
Q 013518 175 SIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 237 (441)
Q Consensus 175 ~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~ 237 (441)
.+++.+.|++|+-||-++-.......+..++..-++||.|| |+|++--..
T Consensus 38 ~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGI-------------ClG~Qlla~ 87 (195)
T PRK07649 38 DIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGV-------------CLGHQSIAQ 87 (195)
T ss_pred HHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEE-------------cHHHHHHHH
Confidence 34567899999999999865432222222221223556655 888765443
No 247
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=20.98 E-value=3e+02 Score=26.49 Aligned_cols=57 Identities=16% Similarity=0.280 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCC--chHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDG--TQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI 226 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdg--s~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t 226 (441)
+.+++++.+.+.+-|+++ |||.. +......+.+.+++ ..++||+.-|.+.+.=.++-
T Consensus 12 ~~~~ia~~v~~~gtDaI~-VGGS~gvt~~~~~~~v~~ik~-~~~lPvilfp~~~~~i~~~a 70 (205)
T TIGR01769 12 EIEKIAKNAKDAGTDAIM-VGGSLGIVESNLDQTVKKIKK-ITNLPVILFPGNVNGLSRYA 70 (205)
T ss_pred HHHHHHHHHHhcCCCEEE-EcCcCCCCHHHHHHHHHHHHh-hcCCCEEEECCCccccCcCC
Confidence 456777889999999875 55554 34445555666655 35678998998887544443
No 248
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.95 E-value=5.2e+02 Score=23.14 Aligned_cols=85 Identities=11% Similarity=0.164 Sum_probs=46.1
Q ss_pred eEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChh-hhhccccccccccc-cccC---CC
Q 013518 93 HACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPK-VVNDIHKRGGTILG-TSRG---GH 167 (441)
Q Consensus 93 ~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~-~v~~~~~~GGs~LG-ssR~---~~ 167 (441)
+|-+-+.|||.=-+..-+-+. +.+. .+.+|+ +.|.- .+.+ .++.....+-.++| |+.. ..
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~---~l~~-~GfeVi-----~LG~~------v~~e~~v~aa~~~~adiVglS~l~~~~~~ 67 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDH---AFTN-AGFNVV-----NLGVL------SPQEEFIKAAIETKADAILVSSLYGHGEI 67 (134)
T ss_pred eEEEEEecCChhhHhHHHHHH---HHHH-CCCEEE-----ECCCC------CCHHHHHHHHHHcCCCEEEEecccccCHH
Confidence 677778888865444422222 2222 334665 33321 2222 33333333444444 2222 13
Q ss_pred CHHHHHHHHHHhCC-CEEEEEcCCCc
Q 013518 168 DTSKIVDSIQDRGI-NQVYIIGGDGT 192 (441)
Q Consensus 168 ~~~~i~~~l~~~~I-d~LvvIGGdgs 192 (441)
.+.++++.|++.++ +..+++||.-.
T Consensus 68 ~~~~~~~~l~~~gl~~~~vivGG~~v 93 (134)
T TIGR01501 68 DCKGLRQKCDEAGLEGILLYVGGNLV 93 (134)
T ss_pred HHHHHHHHHHHCCCCCCEEEecCCcC
Confidence 57889999999998 55677999754
No 249
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=20.85 E-value=52 Score=34.10 Aligned_cols=29 Identities=34% Similarity=0.440 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCchHHHHH-HHHHHHHcCCCceEEEe
Q 013518 181 INQVYIIGGDGTQKGAAV-IYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 181 Id~LvvIGGdgs~~~a~~-L~~~~~~~~~~i~vvgI 215 (441)
.|.+|-.||||||-.|.- +.+ -..|||||
T Consensus 106 aD~VisvGGDGTfL~Aasrv~~------~~~PViGv 135 (395)
T KOG4180|consen 106 ADMVISVGGDGTFLLAASRVID------DSKPVIGV 135 (395)
T ss_pred hhEEEEecCccceeehhhhhhc------cCCceeee
Confidence 478999999999865543 433 24678987
No 250
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=20.77 E-value=2.5e+02 Score=26.22 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=43.7
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (441)
.++.++ || .|+.+ ..+++.+.+.|++.++.|. +||-. .+ -....++.|...+-.+|-.+-+....|.
T Consensus 49 ~~vfll--G~-~~~v~---~~~~~~l~~~yP~l~i~g~-~g~f~---~~---~~~~i~~~I~~s~~dil~VglG~PkQE~ 115 (177)
T TIGR00696 49 LPIFLY--GG-KPDVL---QQLKVKLIKEYPKLKIVGA-FGPLE---PE---ERKAALAKIARSGAGIVFVGLGCPKQEI 115 (177)
T ss_pred CeEEEE--CC-CHHHH---HHHHHHHHHHCCCCEEEEE-CCCCC---hH---HHHHHHHHHHHcCCCEEEEEcCCcHhHH
Confidence 466666 44 45433 3344445556898899887 66642 11 1122455666666555433333333445
Q ss_pred HHHHH-HHhCCCEEEEEcC
Q 013518 172 IVDSI-QDRGINQVYIIGG 189 (441)
Q Consensus 172 i~~~l-~~~~Id~LvvIGG 189 (441)
.+... ..++...++-+||
T Consensus 116 ~~~~~~~~~~~~v~~gvGg 134 (177)
T TIGR00696 116 WMRNHRHLKPDAVMIGVGG 134 (177)
T ss_pred HHHHhHHhCCCcEEEEece
Confidence 44444 3344444555666
No 251
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=20.43 E-value=1.5e+02 Score=31.67 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccC
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDN 221 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 221 (441)
.+..++.+.... |.++|.|||||....- .--+++++-..+|--+|.--||
T Consensus 106 ak~l~e~~~t~~-Dii~VaGGDGT~~eVV--TGi~Rrr~~~~pv~~~P~G~~~ 155 (535)
T KOG4435|consen 106 AKALAEAVDTQE-DIIYVAGGDGTIGEVV--TGIFRRRKAQLPVGFYPGGYDN 155 (535)
T ss_pred HHHHHHHhccCC-CeEEEecCCCcHHHhh--HHHHhcccccCceeeccCccch
Confidence 345556665555 9999999999987543 2223444444556666654443
No 252
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=20.35 E-value=3.1e+02 Score=27.24 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCEEEEE-----cCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCC
Q 013518 171 KIVDSIQDRGINQVYII-----GGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI 223 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvI-----GGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi 223 (441)
..++..-.+|.|-.+.| +|.+++.+|..|+..+++.++++-+.|- .|+|.|-
T Consensus 71 ~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~-~s~D~~t 127 (256)
T PRK03359 71 KGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGD-GSSDLYA 127 (256)
T ss_pred HHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcC-ccccCCC
Confidence 55666667899987777 4668999999999999888888877763 5555543
No 253
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.21 E-value=1e+03 Score=24.92 Aligned_cols=162 Identities=16% Similarity=0.112 Sum_probs=87.0
Q ss_pred EEEccCCCCcchh-HHHHHHHHHHHHhcCCc------EE--EEEcccccccccCCe-eeC--Chhhhhc-cccccccccc
Q 013518 95 CIVTCGGLCPGLN-TVIREIVCGLYHMYGVS------KI--LGIDGGYRGFYSKNT-INL--TPKVVND-IHKRGGTILG 161 (441)
Q Consensus 95 aIl~sGG~apGmN-a~Ir~~v~~~~~~~~~~------~v--~Gi~~G~~GL~~~~~-~~L--~~~~v~~-~~~~GGs~LG 161 (441)
+|+++||==|=+| ..+..+++.+....+.+ .| .|+..++.-|.+.+. +.| +-...+. .+. .+.+
T Consensus 163 ~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~---~l~p 239 (356)
T PRK14462 163 NIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRS---ELMP 239 (356)
T ss_pred CeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHH---HhCC
Confidence 7888877788888 45666666664322211 11 344444444443332 111 1100000 000 1233
Q ss_pred cccCCCCHHHHHHHHHHhC--------CCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChh
Q 013518 162 TSRGGHDTSKIVDSIQDRG--------INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFD 233 (441)
Q Consensus 162 ssR~~~~~~~i~~~l~~~~--------Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~Gfd 233 (441)
.++. ..+++++++++++- |.+.++=|=|++...|.+|++.++. ++..|=-||= |++++.++-.=-+
T Consensus 240 v~~~-~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPy---n~~~~~~~~~ps~ 313 (356)
T PRK14462 240 INKA-YNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNG--IKAKVNLILF---NPHEGSKFERPSL 313 (356)
T ss_pred CCcc-CCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhh--cCcEEEEEeC---CCCCCCCCCCCCH
Confidence 3332 23566666665443 6788888889999999999998864 4456777774 5666655433223
Q ss_pred hHHHHHHHHHHHHHHhhhcCCceEEEEEecCCC----ccHHHH
Q 013518 234 TAVEEAQRAINAAHVEAESIENGIGVVKLMGRY----CGFIAM 272 (441)
Q Consensus 234 TA~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~----~G~LA~ 272 (441)
..++...+.+ .+..-.+.|-..+|++ ||-|+.
T Consensus 314 e~i~~f~~~l-------~~~gi~vtvR~~~G~dI~aACGQL~~ 349 (356)
T PRK14462 314 EDMIKFQDYL-------NSKGLLCTIRESKGLDISAACGQLRE 349 (356)
T ss_pred HHHHHHHHHH-------HHCCCcEEEeCCCCCchhhcCccchh
Confidence 3333322222 2222347888899986 455543
No 254
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=20.20 E-value=2.4e+02 Score=28.55 Aligned_cols=51 Identities=8% Similarity=0.190 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeecccc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (441)
++++.+..|- ..+|.++||||..|-.+ .+|++-+++.+.+.-.|-=|.=||
T Consensus 198 ~RQ~a~~~La-~~vD~miVVGg~~SsNT-~rL~eia~~~~~~t~~Ie~~~el~ 248 (281)
T PRK12360 198 KRQESAKELS-KEVDVMIVIGGKHSSNT-QKLVKICEKNCPNTFHIETADELD 248 (281)
T ss_pred hHHHHHHHHH-HhCCEEEEecCCCCccH-HHHHHHHHHHCCCEEEECChHHCC
Confidence 4667777774 46999999999999775 457777777665544554455554
No 255
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=20.06 E-value=2.4e+02 Score=29.91 Aligned_cols=57 Identities=21% Similarity=0.454 Sum_probs=41.6
Q ss_pred cccccccccccC--CCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc-C--CCceEEEeec
Q 013518 154 KRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-G--LKVAVAGIPK 217 (441)
Q Consensus 154 ~~GGs~LGssR~--~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~-~--~~i~vvgIPk 217 (441)
..+|.++-|+-- ++.+..++..++++++|.++|+|-. +|...+++. . -..+|+.+||
T Consensus 211 r~sG~iInT~g~i~~egy~~llhai~~f~v~vviVLg~E-------rLy~~lkk~~~~~~~v~vv~lpK 272 (415)
T KOG2749|consen 211 RVSGCIINTCGWIEGEGYAALLHAIKAFEVDVVIVLGQE-------RLYSSLKKDLPPKKNVRVVKLPK 272 (415)
T ss_pred cccceEEeccceeccccHHHHHHHHHHcCccEEEEeccH-------HHHHHHHhhccccccceEEEecC
Confidence 456777777654 4678999999999999999999866 343333322 2 3578999999
Done!