Query 013518
Match_columns 441
No_of_seqs 274 out of 1549
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:05:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hig_A 6-phospho-1-fructokinas 100.0 2.6E-96 9E-101 768.9 30.5 398 19-421 20-456 (487)
2 1zxx_A 6-phosphofructokinase; 100.0 1E-84 3.5E-89 652.6 30.0 303 92-413 2-317 (319)
3 1pfk_A Phosphofructokinase; tr 100.0 1.2E-84 4.1E-89 652.4 29.8 303 92-413 3-319 (320)
4 3o8o_A 6-phosphofructokinase s 100.0 2.1E-85 7.1E-90 717.3 24.9 389 18-414 306-764 (787)
5 3o8o_B 6-phosphofructokinase s 100.0 1.3E-85 4.6E-90 718.7 22.8 388 18-413 306-753 (766)
6 3opy_B 6-phosphofructo-1-kinas 100.0 3E-85 1E-89 723.6 23.5 388 18-413 484-929 (941)
7 3o8l_A 6-phosphofructokinase, 100.0 6E-85 2.1E-89 713.3 20.7 387 18-413 316-746 (762)
8 4a3s_A 6-phosphofructokinase; 100.0 2.5E-83 8.5E-88 643.7 29.3 304 92-414 2-318 (319)
9 3hno_A Pyrophosphate-dependent 100.0 2.1E-82 7.1E-87 656.4 27.4 308 91-405 3-366 (419)
10 3opy_A 6-phosphofructo-1-kinas 100.0 1.2E-82 4E-87 701.3 24.2 389 18-414 511-975 (989)
11 2f48_A Diphosphate--fructose-6 100.0 1.3E-79 4.4E-84 653.7 27.5 376 27-412 11-514 (555)
12 3o8l_A 6-phosphofructokinase, 100.0 5.7E-78 2E-82 658.3 24.4 326 90-429 14-386 (762)
13 3o8o_B 6-phosphofructokinase s 100.0 5.6E-77 1.9E-81 650.8 26.6 328 91-429 3-376 (766)
14 3o8o_A 6-phosphofructokinase s 100.0 3.1E-77 1.1E-81 652.9 22.0 328 90-429 4-376 (787)
15 3opy_A 6-phosphofructo-1-kinas 100.0 2.7E-76 9.2E-81 650.8 24.9 328 90-429 209-581 (989)
16 3opy_B 6-phosphofructo-1-kinas 100.0 3.1E-76 1E-80 651.8 23.9 328 91-429 181-554 (941)
17 2an1_A Putative kinase; struct 94.8 0.031 1.1E-06 54.2 5.7 89 92-216 6-94 (292)
18 2i2c_A Probable inorganic poly 93.1 0.048 1.6E-06 52.6 3.2 45 170-217 18-69 (272)
19 1z0s_A Probable inorganic poly 91.9 0.055 1.9E-06 52.9 1.9 64 169-248 42-122 (278)
20 1yt5_A Inorganic polyphosphate 85.4 0.22 7.7E-06 47.5 1.0 53 179-247 40-94 (258)
21 3l49_A ABC sugar (ribose) tran 82.1 25 0.00085 32.2 13.7 128 90-260 4-131 (291)
22 3g1w_A Sugar ABC transporter; 81.4 33 0.0011 31.6 14.4 162 90-295 3-173 (305)
23 3pfn_A NAD kinase; structural 75.6 1.5 5E-05 44.4 3.0 129 84-248 31-163 (365)
24 3kjx_A Transcriptional regulat 75.2 26 0.00089 33.3 11.9 86 91-215 68-153 (344)
25 1u0t_A Inorganic polyphosphate 73.9 1.6 5.4E-05 42.6 2.7 35 178-217 73-107 (307)
26 3h5o_A Transcriptional regulat 70.2 74 0.0025 30.0 16.6 155 91-295 62-225 (339)
27 3afo_A NADH kinase POS5; alpha 69.2 1.4 4.6E-05 45.0 1.1 54 179-247 113-169 (388)
28 2bon_A Lipid kinase; DAG kinas 66.6 7.6 0.00026 37.9 5.9 51 171-224 73-125 (332)
29 3k4h_A Putative transcriptiona 66.1 70 0.0024 29.0 12.3 123 90-262 7-139 (292)
30 3tb6_A Arabinose metabolism tr 66.0 74 0.0025 28.8 12.4 127 92-263 16-146 (298)
31 3e3m_A Transcriptional regulat 65.7 47 0.0016 31.7 11.4 85 91-215 70-155 (355)
32 2qv7_A Diacylglycerol kinase D 65.6 4.2 0.00014 39.8 3.8 51 171-224 71-121 (337)
33 1jq5_A Glycerol dehydrogenase; 63.4 11 0.00037 37.4 6.3 54 168-231 74-127 (370)
34 3o74_A Fructose transport syst 60.8 81 0.0028 28.2 11.5 153 92-295 3-165 (272)
35 3gbv_A Putative LACI-family tr 60.5 99 0.0034 28.0 13.3 161 90-294 7-185 (304)
36 3s4y_A Thiamin pyrophosphokina 60.5 23 0.00078 33.5 7.8 101 83-192 12-134 (247)
37 3s40_A Diacylglycerol kinase; 56.0 7 0.00024 37.7 3.4 86 168-266 52-137 (304)
38 3rot_A ABC sugar transporter, 55.1 57 0.0019 30.0 9.5 89 91-216 3-93 (297)
39 3dbi_A Sugar-binding transcrip 54.9 70 0.0024 30.1 10.3 122 91-261 61-188 (338)
40 2vk2_A YTFQ, ABC transporter p 54.1 1.3E+02 0.0046 27.5 12.4 86 91-215 2-89 (306)
41 3m9w_A D-xylose-binding peripl 53.0 75 0.0026 29.4 10.0 150 91-287 2-162 (313)
42 3uug_A Multiple sugar-binding 52.5 1.4E+02 0.0049 27.5 13.1 102 91-233 3-107 (330)
43 3uhj_A Probable glycerol dehyd 52.2 15 0.00051 37.0 5.2 46 168-218 94-139 (387)
44 3ox4_A Alcohol dehydrogenase 2 51.7 19 0.00064 36.1 5.8 56 168-223 76-144 (383)
45 3l8m_A Probable thiamine pyrop 51.1 26 0.00089 32.2 6.3 68 124-192 23-101 (212)
46 3iv7_A Alcohol dehydrogenase I 51.0 16 0.00056 36.4 5.2 49 168-222 76-124 (364)
47 1oj7_A Hypothetical oxidoreduc 50.9 12 0.00043 37.6 4.4 53 168-220 94-162 (408)
48 3jzd_A Iron-containing alcohol 49.2 18 0.00062 36.0 5.2 47 168-219 77-123 (358)
49 3hl0_A Maleylacetate reductase 49.0 19 0.00067 35.6 5.4 47 168-219 75-121 (353)
50 3l6u_A ABC-type sugar transpor 48.0 1.6E+02 0.0054 26.6 11.6 89 90-215 7-95 (293)
51 1rrm_A Lactaldehyde reductase; 47.4 23 0.00079 35.2 5.7 54 168-221 76-144 (386)
52 8abp_A L-arabinose-binding pro 46.4 1.2E+02 0.0042 27.5 10.3 87 91-215 2-88 (306)
53 3jy6_A Transcriptional regulat 46.4 1.6E+02 0.0056 26.4 13.2 126 89-264 5-133 (276)
54 3d8u_A PURR transcriptional re 46.0 1.6E+02 0.0056 26.2 13.8 121 92-262 4-128 (275)
55 3clk_A Transcription regulator 45.9 1.7E+02 0.0059 26.5 11.5 123 91-261 8-132 (290)
56 3kke_A LACI family transcripti 45.8 1.8E+02 0.0061 26.6 12.4 121 91-261 15-138 (303)
57 3lkb_A Probable branched-chain 43.9 73 0.0025 30.5 8.6 103 105-216 125-231 (392)
58 1o2d_A Alcohol dehydrogenase, 43.9 14 0.00049 36.7 3.5 56 168-223 86-154 (371)
59 3rf7_A Iron-containing alcohol 43.3 25 0.00087 35.2 5.2 55 168-222 94-164 (375)
60 3bfj_A 1,3-propanediol oxidore 42.7 27 0.00094 34.7 5.4 54 168-221 80-146 (387)
61 3okf_A 3-dehydroquinate syntha 41.8 7.5 0.00026 39.5 1.0 49 168-219 108-159 (390)
62 3brq_A HTH-type transcriptiona 39.9 2.1E+02 0.0071 25.7 13.1 87 90-216 18-108 (296)
63 2rgy_A Transcriptional regulat 38.8 2.2E+02 0.0076 25.7 14.6 122 91-262 8-136 (290)
64 2dri_A D-ribose-binding protei 37.8 2.2E+02 0.0076 25.4 10.8 137 92-274 2-150 (271)
65 1dbq_A Purine repressor; trans 37.5 2.3E+02 0.0077 25.4 12.8 123 91-261 7-133 (289)
66 3e61_A Putative transcriptiona 37.2 2.2E+02 0.0077 25.3 11.3 121 91-261 8-129 (277)
67 3o1i_D Periplasmic protein TOR 36.4 1.1E+02 0.0038 27.8 8.2 70 90-192 4-75 (304)
68 1vlj_A NADH-dependent butanol 36.0 29 0.00099 34.9 4.4 54 168-221 89-155 (407)
69 3fst_A 5,10-methylenetetrahydr 36.0 60 0.0021 31.6 6.5 50 167-216 97-153 (304)
70 2gru_A 2-deoxy-scyllo-inosose 35.6 12 0.0004 37.4 1.3 63 168-236 79-144 (368)
71 3bil_A Probable LACI-family tr 34.6 2.5E+02 0.0086 26.4 10.7 87 91-217 66-153 (348)
72 1xah_A Sadhqs, 3-dehydroquinat 34.1 44 0.0015 32.8 5.3 49 168-219 75-126 (354)
73 1ujn_A Dehydroquinate synthase 33.9 14 0.00048 36.5 1.5 49 168-219 69-120 (348)
74 3clh_A 3-dehydroquinate syntha 33.8 50 0.0017 32.4 5.6 49 168-219 70-121 (343)
75 3ksm_A ABC-type sugar transpor 33.3 2.5E+02 0.0087 24.7 11.6 90 92-216 1-91 (276)
76 2pbq_A Molybdenum cofactor bio 31.4 24 0.00083 31.4 2.6 27 166-192 50-80 (178)
77 2fep_A Catabolite control prot 31.1 3E+02 0.01 24.9 12.8 124 90-262 15-141 (289)
78 3egc_A Putative ribose operon 30.8 3E+02 0.01 24.7 11.8 101 90-233 7-108 (291)
79 1x60_A Sporulation-specific N- 30.6 59 0.002 24.4 4.4 50 160-209 14-72 (79)
80 1vdr_A DHFR, dihydrofolate red 30.0 17 0.00058 31.6 1.3 50 168-224 81-130 (162)
81 3gv0_A Transcriptional regulat 29.8 3.1E+02 0.011 24.7 14.4 123 90-261 7-134 (288)
82 3bbl_A Regulatory protein of L 29.7 3.1E+02 0.011 24.7 14.4 123 91-262 4-133 (287)
83 3ipc_A ABC transporter, substr 29.6 1.3E+02 0.0045 28.0 7.7 103 104-215 119-225 (356)
84 1kq3_A Glycerol dehydrogenase; 29.2 26 0.00089 34.7 2.6 53 168-231 83-135 (376)
85 2omk_A Hypothetical protein; s 28.9 2.3E+02 0.0079 26.2 9.0 90 92-192 32-131 (231)
86 3cqj_A L-ribulose-5-phosphate 28.3 3.4E+02 0.012 24.7 10.5 52 166-217 29-89 (295)
87 3ce9_A Glycerol dehydrogenase; 28.2 30 0.001 33.9 2.8 49 168-222 77-125 (354)
88 3td9_A Branched chain amino ac 28.0 2.5E+02 0.0084 26.3 9.3 62 152-216 174-237 (366)
89 1uta_A FTSN, MSGA, cell divisi 27.9 58 0.002 24.8 3.9 51 160-210 14-73 (81)
90 3h75_A Periplasmic sugar-bindi 27.5 3.2E+02 0.011 25.5 10.1 29 91-119 3-32 (350)
91 2qip_A Protein of unknown func 26.9 75 0.0026 27.5 4.9 49 167-218 94-144 (165)
92 1ta9_A Glycerol dehydrogenase; 26.8 31 0.0011 35.4 2.7 54 168-232 134-187 (450)
93 1cz3_A Dihydrofolate reductase 26.8 24 0.00081 30.7 1.6 48 167-221 80-129 (168)
94 3nyi_A FAT acid-binding protei 26.6 70 0.0024 30.8 5.1 71 142-213 44-122 (297)
95 3apt_A Methylenetetrahydrofola 25.9 42 0.0014 32.7 3.3 50 167-216 86-150 (310)
96 3qk7_A Transcriptional regulat 25.7 3.7E+02 0.013 24.3 12.7 123 91-263 6-135 (294)
97 4b4k_A N5-carboxyaminoimidazol 25.5 72 0.0025 29.0 4.5 10 208-217 99-108 (181)
98 1iv0_A Hypothetical protein; r 25.4 57 0.002 26.3 3.6 28 196-223 40-67 (98)
99 1sg6_A Pentafunctional AROM po 25.2 57 0.0019 32.6 4.3 49 168-219 88-141 (393)
100 3gyb_A Transcriptional regulat 25.2 3.6E+02 0.012 23.9 11.7 68 90-192 4-71 (280)
101 3c3k_A Alanine racemase; struc 25.0 3.8E+02 0.013 24.0 11.7 122 90-262 7-132 (285)
102 4grd_A N5-CAIR mutase, phospho 24.4 62 0.0021 29.2 3.9 53 159-218 46-99 (173)
103 3huu_A Transcription regulator 24.1 2.4E+02 0.0081 25.8 8.2 134 91-274 22-171 (305)
104 3nkl_A UDP-D-quinovosamine 4-d 24.0 1.2E+02 0.004 24.8 5.4 46 170-217 55-100 (141)
105 3ors_A N5-carboxyaminoimidazol 23.8 1.1E+02 0.0037 27.3 5.3 89 160-274 38-132 (163)
106 3brs_A Periplasmic binding pro 23.4 3.4E+02 0.012 24.1 9.1 128 90-262 4-139 (289)
107 3nxk_A Cytoplasmic L-asparagin 23.2 4E+02 0.014 26.0 10.0 59 167-227 72-133 (334)
108 3lft_A Uncharacterized protein 23.2 4.2E+02 0.014 24.0 10.6 68 91-188 2-70 (295)
109 3kuu_A Phosphoribosylaminoimid 22.9 1.1E+02 0.0038 27.6 5.2 52 160-218 47-99 (174)
110 2o20_A Catabolite control prot 22.7 4.5E+02 0.016 24.2 13.7 87 90-216 62-149 (332)
111 3mjf_A Phosphoribosylamine--gl 22.4 1.3E+02 0.0045 30.1 6.4 88 90-208 2-92 (431)
112 2nrr_A Uvrabc system protein C 22.3 1.1E+02 0.0038 27.1 5.1 85 167-255 61-153 (159)
113 2fvy_A D-galactose-binding per 22.1 4.3E+02 0.015 23.7 9.5 89 92-217 3-92 (309)
114 3eaf_A ABC transporter, substr 22.1 2.9E+02 0.01 26.1 8.7 105 104-216 122-232 (391)
115 3d02_A Putative LACI-type tran 22.0 4.3E+02 0.015 23.7 10.7 89 90-215 3-92 (303)
116 3hcw_A Maltose operon transcri 21.9 2.9E+02 0.0099 25.1 8.3 78 169-262 57-139 (295)
117 3lp8_A Phosphoribosylamine-gly 21.8 3.9E+02 0.013 26.6 9.9 90 88-208 18-108 (442)
118 3qbe_A 3-dehydroquinate syntha 21.7 83 0.0029 31.4 4.7 50 168-220 88-140 (368)
119 3lp6_A Phosphoribosylaminoimid 21.6 1E+02 0.0035 27.8 4.7 53 160-219 42-95 (174)
120 3s99_A Basic membrane lipoprot 21.5 3.9E+02 0.013 26.0 9.5 92 89-216 24-117 (356)
121 2rjo_A Twin-arginine transloca 21.5 2E+02 0.0069 26.7 7.3 92 90-219 4-98 (332)
122 3ihk_A Thiamin pyrophosphokina 21.4 1.2E+02 0.004 27.9 5.3 85 95-192 4-100 (218)
123 2fqx_A Membrane lipoprotein TM 21.4 5E+02 0.017 24.2 16.2 23 168-190 50-72 (318)
124 3qyf_A Crispr-associated prote 21.2 2.1E+02 0.0071 28.3 7.2 87 193-289 106-195 (324)
125 2iks_A DNA-binding transcripti 20.9 4.6E+02 0.016 23.5 10.1 125 90-263 19-147 (293)
126 1qpz_A PURA, protein (purine n 20.7 5E+02 0.017 24.0 13.7 122 91-261 58-184 (340)
127 3g85_A Transcriptional regulat 20.6 2.3E+02 0.008 25.4 7.3 123 90-262 10-135 (289)
128 3lkv_A Uncharacterized conserv 20.2 4.2E+02 0.014 24.5 9.2 73 89-189 6-78 (302)
129 2yxb_A Coenzyme B12-dependent 20.2 2.7E+02 0.0094 23.9 7.3 88 90-192 17-110 (161)
130 3miz_A Putative transcriptiona 20.1 2E+02 0.0067 26.2 6.7 69 91-192 13-82 (301)
No 1
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=100.00 E-value=2.6e-96 Score=768.91 Aligned_cols=398 Identities=38% Similarity=0.628 Sum_probs=352.6
Q ss_pred ccccccchhhhCCCC--CCCcCCCCCCcccccccccccccChhHHHHHHhccCC-------CCcccccccCCcccccccC
Q 013518 19 VLEDVPHLTDYIPDL--PTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-------PRGTHFRRAGPRQKVYFVS 89 (441)
Q Consensus 19 ~~eav~~l~~~~p~~--p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-------~~~~~f~~~~~r~~~~~~~ 89 (441)
.++.|..+--..|.+ |++++||..|.. ...||.+++.|+..+....+. .....|+++|||+++||++
T Consensus 20 ~~~~~~~~~~~i~~lg~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~~ 95 (487)
T 2hig_A 20 MLNSVTQEDLKVDRLPGADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIHFNP 95 (487)
T ss_dssp SCSSCCTTTTCCEECSCCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC-----CCBBSCCCEEEECCCBSEESSCG
T ss_pred cccCCCccccccCcCCCCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCccccccccchHHHHHcCCcceeeecC
Confidence 356777664334433 778899966554 578999999987765432211 1234799999999999999
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccccccccc---CCeeeCChhhhhccccccccccccccCC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---KNTINLTPKVVNDIHKRGGTILGTSRGG 166 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~---~~~~~L~~~~v~~~~~~GGs~LGssR~~ 166 (441)
+.+||||+||||||||||++||++|+++.+.++..+||||++||+||++ +++++|+|++|++|+++|||+|||+|++
T Consensus 96 ~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGTiLGTsR~~ 175 (487)
T 2hig_A 96 TETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGP 175 (487)
T ss_dssp GGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSCCCCSC
T ss_pred CCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCCeeccCCCC
Confidence 9999999999999999999999999998765676799999999999974 6999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHH
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i 246 (441)
++.++++++|++++||+||+||||||+++|++|++++++++++|+||||||||||||++||+|||||||+++++++|+++
T Consensus 176 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~eaId~i 255 (487)
T 2hig_A 176 QDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAA 255 (487)
T ss_dssp CCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHh-----------------------h
Q 013518 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQS-----------------------M 302 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~-----------------------~ 302 (441)
++||.||++||||||||||+|||||+++|||++.||+|||||.||+++++ +.++. .
T Consensus 256 ~~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~~l~~i~~~i~~r~~~k~~~IIvVaEGag~~~~~~~ 335 (487)
T 2hig_A 256 YAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQEVMSLLERRFCHSRSCVIIVAEGFGQDWGRGS 335 (487)
T ss_dssp HHHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCCCHHHHHHHHHHHTTSCSEEEEEEETTTTGGGCCC-
T ss_pred HHHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccc
Confidence 99999987899999999999999999999999339999999999999977 21111 0
Q ss_pred hhhhccCCcchhhhHHHHHHHHHHHhccccceee---eeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceE
Q 013518 303 NQQDASGNKLLQDVGLWISHKIKDHFARLHKMAI---NLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFT 379 (441)
Q Consensus 303 ~~~d~~G~~~l~~i~~~l~~~I~~~~~~~~~~~~---~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~m 379 (441)
..+|++||+++.+++.+|+++|+++++.. +..+ ++|+++|||+|||++||++||+||++||.+||+++++|+||+|
T Consensus 336 ~~~Da~G~~~l~~i~~~l~~~i~~~~~~~-g~~~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~~l~~G~tg~m 414 (487)
T 2hig_A 336 GGYDASGNKKLIDIGVILTEKVKAFLKAN-KSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCI 414 (487)
T ss_dssp -CBCTTSCBCCCCHHHHHHHHHHHHHHTT-TTTSSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHTTEESEE
T ss_pred cccccccCcchhHHHHHHHHHHHHHHhhc-CccccccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 12588999999999999999999998522 2223 6899999999999999999999999999999999999999999
Q ss_pred EEEECCeEEeechhhhhhcCCccCcCHHHHHHHHHhcCCCCC
Q 013518 380 VGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSF 421 (441)
Q Consensus 380 Vg~~~~~~~~vPl~~v~~~~k~v~~~~~~~~~~l~~t~qp~~ 421 (441)
|++++++++++||++++...|.+++++.||+++++.++||.-
T Consensus 415 Vgi~~~~i~~vPl~ev~~~~k~v~~~~~~w~~~~~~~~~~~~ 456 (487)
T 2hig_A 415 IAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLGS 456 (487)
T ss_dssp EEEETTEEEEEEHHHHTTEEEEECTTSHHHHHHHHHSCCCC-
T ss_pred EEEECCEEEEEEHHHHHccCCCcCcchHHHHHHHHHhCCcch
Confidence 999999999999999999999999999999999999999863
No 2
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=100.00 E-value=1e-84 Score=652.63 Aligned_cols=303 Identities=27% Similarity=0.379 Sum_probs=270.0
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCC----
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~---- 167 (441)
+||||+||||||||||++||++++++.+ + +.+||||++||+||+++++++|+|++|++|+++|||+|||+|++.
T Consensus 2 k~i~IltsGGdapGmNaair~vv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 79 (319)
T 1zxx_A 2 KRIGILTSGGDAPGMNAAVRAVTRVAIA-N-GLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEE 79 (319)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHT-T-TCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCcccccCCCCccCCH
Confidence 4999999999999999999999999863 4 569999999999999999999999999999999999999999863
Q ss_pred -CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHH
Q 013518 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (441)
Q Consensus 168 -~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i 246 (441)
++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+|+++++|+++
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 153 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH------GFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHh------CCCEEEEeecccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999874 47899999999999999999999999999999999999
Q ss_pred HHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhhhhhhccCCc---chhh----hHH
Q 013518 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSMNQQDASGNK---LLQD----VGL 318 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~~~~d~~G~~---~l~~----i~~ 318 (441)
+++|+|| +||||||||||+|||||+++|||+ +||+|||||.||+++++ +.+++. .+.|+. .+.. .+.
T Consensus 154 ~~ta~s~-~rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~~i~~~i~~~---~~~gk~~~iIvvaEG~~~~~ 228 (319)
T 1zxx_A 154 RDTASSH-HRVFIVNVMGRNCGDIAMRVGVAC-GADAIVIPERPYDVEEIANRLKQA---QESGKDHGLVVVAEGVMTAD 228 (319)
T ss_dssp HHHHHHT-TCEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHHHHHHHHHHH---HHTTCCCEEEEEETTTCCHH
T ss_pred HHHHhcC-CCEEEEEeCCCCHHHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHH---HHcCCCcEEEEEeCCcChHH
Confidence 9999997 489999999999999999999999 79999999999999987 333322 112222 1111 267
Q ss_pred HHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCeEEeechhhhhhc
Q 013518 319 WISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINER 398 (441)
Q Consensus 319 ~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~~~~~vPl~~v~~~ 398 (441)
+|+++|+++++ +++|+++|||+|||++||++||++|++||.+||+++++|++|+||++++++++++||+++.+.
T Consensus 229 ~l~~~i~~~~~------~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv~~~~~~~~~~pl~~~~~~ 302 (319)
T 1zxx_A 229 QFMAELKKYGD------FDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGKGGLAVGIENGKVTSHDILDLFDE 302 (319)
T ss_dssp HHHHHHHHSSC------CCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEEEHHHHTTC
T ss_pred HHHHHHHHhhC------ceEEEecCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCEEEEEEHHHHHhc
Confidence 88888888754 357889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCcCHHHHHHHH
Q 013518 399 QNQVVITDRMWARVL 413 (441)
Q Consensus 399 ~k~v~~~~~~~~~~l 413 (441)
+|+++++.....+.|
T Consensus 303 ~k~~~~~~~~~~~~~ 317 (319)
T 1zxx_A 303 SHRGDYDLLKLNADL 317 (319)
T ss_dssp CCCCCTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999977655544443
No 3
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=100.00 E-value=1.2e-84 Score=652.45 Aligned_cols=303 Identities=27% Similarity=0.378 Sum_probs=270.2
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCC----
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH---- 167 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~---- 167 (441)
+||||+||||||||||++||++++++.+ + +.+||||++||+||+++++++|+|++|++|+++|||+|||+|+++
T Consensus 3 k~i~IltsGGdapGmNaair~vv~~a~~-~-g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 80 (320)
T 1pfk_A 3 KKIGVLTSGGDAPGMNAAIRGVVRSALT-E-GLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHHHHHH-T-TCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred CEEEEEccCCCchhHHHHHHHHHHHHHH-C-CCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCCeeccCCCCCCCCH
Confidence 4999999999999999999999998863 4 479999999999999999999999999999999999999999853
Q ss_pred -CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHH
Q 013518 168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (441)
Q Consensus 168 -~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i 246 (441)
++++++++|++++||+||+||||||+++|++|+++ .++|||||||||||+++||+|||||||+|+++++|+++
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~------~i~vvgiPkTIDNDl~~td~t~GfdTA~~~~~~aid~i 154 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRL 154 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhh------CCCEEEEeccccCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999873 57899999999999999999999999999999999999
Q ss_pred HHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhhhhhhccCCcc---hh----hhHH
Q 013518 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSMNQQDASGNKL---LQ----DVGL 318 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~~~~d~~G~~~---l~----~i~~ 318 (441)
+++|+||+ ||||||||||+|||||+++|||+ +||+|||||.||+++++ +.+++ +...|+.. +. ..+.
T Consensus 155 ~~ta~s~~-rv~iVEvMGR~aG~lAl~a~lA~-ga~~iliPE~~~~~~~i~~~i~~---~~~~gk~~~iIvvaEG~~~~~ 229 (320)
T 1pfk_A 155 RDTSSSHQ-RISVVEVMGRYCGDLTLAAAIAG-GCEFVVVPEVEFSREDLVNEIKA---GIAKGKKHAIVAITEHMCDVD 229 (320)
T ss_dssp HHHHHHHT-CEEEEEECCTTCCHHHHHHHHHT-TCSEEECTTSCCCHHHHHHHHHH---HHHTTCSCEEEEEESSSSCHH
T ss_pred HHHHhcCC-CEEEEEeCCcCHHHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHH---HHHcCCCcEEEEEeCCcchHH
Confidence 99999975 89999999999999999999999 79999999999999987 33332 21122221 11 1377
Q ss_pred HHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCeEEeechhhhh-h
Q 013518 319 WISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRIN-E 397 (441)
Q Consensus 319 ~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~~~~~vPl~~v~-~ 397 (441)
+|+++|+++++ +++|+++|||+|||++||++||++|++||.+||+++++|++|+||++++++++++||+++. .
T Consensus 230 ~la~~i~~~~~------~~~r~~~lGh~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~~g~mv~~~~~~~~~~pl~~~~~~ 303 (320)
T 1pfk_A 230 ELAHFIEKETG------RETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDIIDAIEN 303 (320)
T ss_dssp HHHHHHHHHHS------SCEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHHTCCSEEEEEETTEEEEEEHHHHHHH
T ss_pred HHHHHHHHHhC------CeEEEEcCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCEEEEEEHHHHHhh
Confidence 89999988765 3478899999999999999999999999999999999999999999999999999999999 8
Q ss_pred cCCccCcCHHHHHHHH
Q 013518 398 RQNQVVITDRMWARVL 413 (441)
Q Consensus 398 ~~k~v~~~~~~~~~~l 413 (441)
++|+++++...+.+.|
T Consensus 304 ~~k~~~~~~~~~~~~l 319 (320)
T 1pfk_A 304 MKRPFKGDWLDCAKKL 319 (320)
T ss_dssp CCCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh
Confidence 8898986655554443
No 4
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-85 Score=717.28 Aligned_cols=389 Identities=18% Similarity=0.229 Sum_probs=332.3
Q ss_pred cccccccchhhhCCCCCCCcCCCCCCcccccccccccccChhHHHHHHhccCC-----CCcccccccCC--------c-c
Q 013518 18 YVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGP--------R-Q 83 (441)
Q Consensus 18 ~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~--------r-~ 83 (441)
++++||.+|++..+++|.+++.+.+|++++.|+++++..++.|.+++. +++| +|+++|.+++. + .
T Consensus 306 lG~~AV~~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~~ 384 (787)
T 3o8o_A 306 QGVDAVKAVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIE-NKDFDKAISLRDTEFIELYENFLSTTVKDDG 384 (787)
T ss_dssp HHHHHHHHHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHTSCTTHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhh-cCCHHHHHhccCHHHHHHHHHHHHhccCCCc
Confidence 468999999999999999999999999999999999999999999998 7887 79999998861 1 1
Q ss_pred c-ccccCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccc-cCCeeeCChhhhhccccccccccc
Q 013518 84 K-VYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY-SKNTINLTPKVVNDIHKRGGTILG 161 (441)
Q Consensus 84 ~-~~~~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~-~~~~~~L~~~~v~~~~~~GGs~LG 161 (441)
+ .....+.+||||+||||||||||++||++|+++.+ .+++||||++||+||+ ++++++|+|.+|++|+++|||+||
T Consensus 385 ~~~~~~~~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt~LG 462 (787)
T 3o8o_A 385 SELLPVSDRLNIGIVHVGAPSAALNAATRAATLYCLS--HGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSEIG 462 (787)
T ss_dssp CSCCCSSCCCEEEEEEESSCCSSHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCTTC
T ss_pred cccCCcccCcEEEEEccCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCceec
Confidence 1 11123468999999999999999999999998853 3579999999999999 899999999999999999999999
Q ss_pred cccCC--CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc-CCCceEEEeeccccCCCCCCCCCCChhhHHHH
Q 013518 162 TSRGG--HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (441)
Q Consensus 162 ssR~~--~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~ 238 (441)
|+|+. +++++++++|++++||+||+|||||||++|.+|+++++++ .+.|+||||||||||||++||+|||||||+|+
T Consensus 463 TsR~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~~~ 542 (787)
T 3o8o_A 463 TNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLNA 542 (787)
T ss_dssp CBCCCGGGCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHHHH
T ss_pred cCCCCchhhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHHHH
Confidence 99984 3788999999999999999999999999999999876554 35689999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhhhh-------hhccCC
Q 013518 239 AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSMNQ-------QDASGN 310 (441)
Q Consensus 239 ~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~~~-------~d~~G~ 310 (441)
++++||+|+++|.|+++||||||||||+|||||+++|||+ +||+|||||.||+++++ +.++...+ ++..+.
T Consensus 543 ~~eaid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~iliPE~~~~~~~~~~~i~~~~~~~~~~~g~~~~~~ 621 (787)
T 3o8o_A 543 LVNYTDDIKQSASATRRRVFVCEVQGGHSGYIASFTGLIT-GAVSVYTPEKKIDLASIREDITLLKENFRHDKGENRNGK 621 (787)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEECCTTCTHHHHHHHHTT-TCSEEECSSSCCCHHHHHHHHHHHHHHHHHCCSCSSCCE
T ss_pred HHHHHHHHHHHhhccCCcEEEEEeCCCCccHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCce
Confidence 9999999999998867899999999999999999999999 89999999999999988 22322111 111222
Q ss_pred cchhh-------hHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCC--------
Q 013518 311 KLLQD-------VGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGY-------- 375 (441)
Q Consensus 311 ~~l~~-------i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~-------- 375 (441)
..+.+ .+.+|++.|+++.+ . .+++|...|||+||||.||++||++|++||.+||+++++|.
T Consensus 622 iivvaEg~~~~~~~~~la~~i~~~~~--~--~~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~~~~~~~~~~~ 697 (787)
T 3o8o_A 622 LLVRNEQASSVYSTQLLADIISEASK--G--KFGVRTAIPGHVQQGGVPSSKDRVTASRFAVKCIKFIEQWNKKNEASPN 697 (787)
T ss_dssp EEEEETTSCSSSCHHHHHHHHHHHHT--T--SSEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred EEEEeCCccCCCCHHHHHHHHHHHhC--C--CceeEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 22222 26788998888753 1 14578999999999999999999999999999999998876
Q ss_pred -------------------------CceEEEEECCeEEeechhhhhhcCCc---cCcCHHHHHHHHH
Q 013518 376 -------------------------TGFTVGPVNGRHAYIPFNRINERQNQ---VVITDRMWARVLS 414 (441)
Q Consensus 376 -------------------------tg~mVg~~~~~~~~vPl~~v~~~~k~---v~~~~~~~~~~l~ 414 (441)
+++|||+++++++++|++++.+..-. -.|+..||..+..
T Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~i~~~p~~~~~~~~~d~~~r~~~~~~w~~~~~ 764 (787)
T 3o8o_A 698 TDAKVLRFKFDTHGEKVPTVEHEDDSAAVICVNGSHVSFKPIANLWENETNVELRKGFEVHWAEYNK 764 (787)
T ss_dssp ----------------------CGGGEEEEEEETTEEEEEEHHHHTTSBCTTTTCSBSCCCCHHHHH
T ss_pred ccccccccccccccccccccccCCCceEEEEEECCEEEEeeHHHHHhhccchhhCCCcChHHHhHHH
Confidence 68999999999999999998753221 2255667766543
No 5
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-85 Score=718.75 Aligned_cols=388 Identities=20% Similarity=0.220 Sum_probs=332.8
Q ss_pred cccccccchhhhCCCCCCCcCCCCCCcccccccccccccChhHHHHHHhccCC-----CCcccccccCC--------c-c
Q 013518 18 YVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGP--------R-Q 83 (441)
Q Consensus 18 ~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~--------r-~ 83 (441)
++.+||.+|++..+++|.+++.+.+|++++.|+++++..++.|.++++ +|+| +|+++|.+++. + .
T Consensus 306 ~G~~AV~~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~~-~~~~~~a~~lr~~~f~~~~~~~~~~~~~~~~ 384 (766)
T 3o8o_B 306 QGLEAVNAVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQ-AKDFKRAMSLRDTEFIEHLNNFMAINSADHN 384 (766)
T ss_dssp HHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHHSCTTHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHHh-cCCHHHHHHccCHHHHHHHHHHHHhccCCcc
Confidence 468999999999999999999999999999999999999999999998 7887 69999998861 1 1
Q ss_pred c-ccccCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccccccccc-CCeeeCChhhhhccccccccccc
Q 013518 84 K-VYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS-KNTINLTPKVVNDIHKRGGTILG 161 (441)
Q Consensus 84 ~-~~~~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~-~~~~~L~~~~v~~~~~~GGs~LG 161 (441)
+ .....+.+||||+||||||||||++||++|+++.. .+.+||||++||+||++ +++.+|+|++|++|+++|||+||
T Consensus 385 ~~~~~~~~~~~IgIltsGGdapGmNaaIravv~~a~~--~g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt~LG 462 (766)
T 3o8o_B 385 EPKLPKDKRLKIAIVNVGAPAGGINSAVYSMATYCMS--QGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGSEIG 462 (766)
T ss_dssp TTCSSSSCCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSCTTC
T ss_pred cccCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCceEc
Confidence 1 11123357999999999999999999999998863 34799999999999997 78999999999999999999999
Q ss_pred cccCC---CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc-CCCceEEEeeccccCCCCCCCCCCChhhHHH
Q 013518 162 TSRGG---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 237 (441)
Q Consensus 162 ssR~~---~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~ 237 (441)
|+|+. .++++++++|++++||+||+|||||||++|++|+++++++ .+.|+|||||||||||+++||+|||||||+|
T Consensus 463 TsR~~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA~~ 542 (766)
T 3o8o_B 463 TNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALN 542 (766)
T ss_dssp CCCCCGGGGCHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHHHH
T ss_pred cCCCCCccchHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHHHH
Confidence 99984 3688999999999999999999999999999998765443 2568999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhh---h----hhhccC
Q 013518 238 EAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSM---N----QQDASG 309 (441)
Q Consensus 238 ~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~---~----~~d~~G 309 (441)
+++++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||.||+++++ +.++.. . .+.+++
T Consensus 543 ~~~~aid~i~~ta~ss~~rv~iVEvMGR~aG~lAl~aglA~-ga~~ilIPE~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 621 (766)
T 3o8o_B 543 ALMEYCDVVKQSASSTRGRAFVVDCQGGNSGYLATYASLAV-GAQVSYVPEEGISLEQLSEDIEYLAQSFEKAEGRGRFG 621 (766)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHhhccCCcEEEEEeCCCchhHHHHHHHHhh-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhhhhccCCCc
Confidence 99999999999998877899999999999999999999999 79999999999999988 223211 1 122334
Q ss_pred Ccchhh-------hHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCC-------
Q 013518 310 NKLLQD-------VGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGY------- 375 (441)
Q Consensus 310 ~~~l~~-------i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~------- 375 (441)
+..+.+ .+.+|++.|+++.+ .. +++|+..|||+||||.||++||++|++||.+||+++++|+
T Consensus 622 ~iivvaEg~~~~~~~~~la~~i~~~~~--~~--~e~R~tvLGhiQRGG~Ps~~DR~lAtr~G~~Av~~l~~g~~~~~~~~ 697 (766)
T 3o8o_B 622 KLILKSTNASKALSATKLAEVITAEAD--GR--FDAKPAYPGHVQQGGLPSPIDRTRATRMAIKAVGFIKDNQAAIAEAR 697 (766)
T ss_dssp EEEEEEGGGCSSCCHHHHHHHHHHHHT--TS--CEEEEEBCGGGGGCSSCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHS
T ss_pred eEEEEeCCcCCCCcHHHHHHHHHHHhC--CC--ceEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 443322 26788888887753 12 4578999999999999999999999999999999999999
Q ss_pred ---------------CceEEEEECCeEEeechhhhhhcCC---ccCcCHHHHHHHH
Q 013518 376 ---------------TGFTVGPVNGRHAYIPFNRINERQN---QVVITDRMWARVL 413 (441)
Q Consensus 376 ---------------tg~mVg~~~~~~~~vPl~~v~~~~k---~v~~~~~~~~~~l 413 (441)
+++|||+++++++++||+++.+... .-.|+..||..+.
T Consensus 698 ~~~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~~~~~~~~d~~~r~~~~~~w~~~~ 753 (766)
T 3o8o_B 698 AAEENFNADDKTISDTAAVVGVKGSHVVYNSIRQLYDYETEVSMRMPKVIHWQATR 753 (766)
T ss_dssp SSSSTTCCCCHHHHTTSEEEECSSSCCEEEEHHHHHHHTBCGGGSSBSSCSCHHHH
T ss_pred ccccccccccccCCCceEEEEEECCEEEEEeHHHHHhhccchhhCCCCChhHHhHH
Confidence 8999999999999999999875322 2225566777643
No 6
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3e-85 Score=723.58 Aligned_cols=388 Identities=18% Similarity=0.221 Sum_probs=331.2
Q ss_pred cccccccchhhhCCCCCCCcCCCCCCcccccccccccccChhHHHHHHhccCC-----CCcccccccCC--------c--
Q 013518 18 YVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGP--------R-- 82 (441)
Q Consensus 18 ~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~--------r-- 82 (441)
++.+||.+|++..+++|.+++.+.+|++++.|+++++..++.|.+++. +++| +|+++|.+++. +
T Consensus 484 lG~~AV~~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~~-~~~f~~a~~lr~~~f~~~~~~~~~~~~~~~~ 562 (941)
T 3opy_B 484 QGVEAVNAVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIE-SRNFKKAISLRDSEFVEHMKNFISTNSADHV 562 (941)
T ss_dssp HHHHHHHHHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHHSCHHHHHHHHHHHHHHC-CCS
T ss_pred HHHHHHHHHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHHh-cCCHHHHHHccCHHHHHHHHHHHHhccCCCc
Confidence 568999999999999999999999999999999999999999999998 7887 69999998861 1
Q ss_pred ccccccCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccc-cCCeeeCChhhhhccccccccccc
Q 013518 83 QKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY-SKNTINLTPKVVNDIHKRGGTILG 161 (441)
Q Consensus 83 ~~~~~~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~-~~~~~~L~~~~v~~~~~~GGs~LG 161 (441)
.......+++||||+||||||||||++||++|+++.. .+.+||||++||+||+ ++++++|+|.+|++|+++|||+||
T Consensus 563 ~~~~~~~~~~rIgIltsGGdapGmNaaIravv~~a~~--~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGTiLG 640 (941)
T 3opy_B 563 PPSLPLEKRKKIAIINVGAPAGGMNSAVYSMATYCMS--RGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGSEIG 640 (941)
T ss_dssp CCSSCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCSSC
T ss_pred cccCCcccCcEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCcEec
Confidence 1112223568999999999999999999999998853 3579999999999999 799999999999999999999999
Q ss_pred cccCC---CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc-CCCceEEEeeccccCCCCCCCCCCChhhHHH
Q 013518 162 TSRGG---HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 237 (441)
Q Consensus 162 ssR~~---~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~ 237 (441)
|+|+. .++++++++|++++||+||+|||||||++|.+|+++++++ ++.|+|||||||||||+++||+|||||||+|
T Consensus 641 TsR~~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~~ 720 (941)
T 3opy_B 641 TNRTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCLN 720 (941)
T ss_dssp EECCCTTTSCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHH
T ss_pred cCCCCcccchHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHHH
Confidence 99973 3688999999999999999999999999999998865544 3578999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhh---hh----hhccC
Q 013518 238 EAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSM---NQ----QDASG 309 (441)
Q Consensus 238 ~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~---~~----~d~~G 309 (441)
+++++||+|+++|.|+++||||||||||+|||||+++|||+ +||+|||||.||+++++ +.++.. .+ +...+
T Consensus 721 ~i~eaid~i~~tA~ssh~RvfiVEvMGR~aG~LAl~agLA~-GAd~ilIPE~~~~l~~l~~~i~~l~~~~~~~~g~~~~~ 799 (941)
T 3opy_B 721 SFMEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQLAC-GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSG 799 (941)
T ss_dssp HHHHHHHHHHHHHHHC-CEEEEEEECSTTCCHHHHHHHHHH-TCSEEECTTTCCCHHHHHHHHHHHHHHHHTCTTSCCCC
T ss_pred HHHHHHHHHHHHhhhcCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEeCCCCCCHHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 99999999999998877899999999999999999999999 79999999999999988 223221 11 11222
Q ss_pred Ccchhhh-------HHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCC-------
Q 013518 310 NKLLQDV-------GLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGY------- 375 (441)
Q Consensus 310 ~~~l~~i-------~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~------- 375 (441)
...+.++ +..|++.|+++++ .+ +.+|+..|||+||||.|+++||++|++||.+||+++++|+
T Consensus 800 ~iIvvaEga~~~~~~~~la~~i~~~~~--~g--~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Av~~l~~g~~~~~~~~ 875 (941)
T 3opy_B 800 RLILKSENASKVLTTEVISTIIDDEAS--GR--FDSKTAIPGHVQQGGIPSPMDRVRASRFAIRAVSFIERHSDRCQTFK 875 (941)
T ss_dssp EEEEEEGGGCSSSCHHHHHHHHHHHHT--TS--SEEEEECCCTTTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCccCCCCHHHHHHHHHHHhC--CC--ceeEEccccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 2222221 5788888888753 12 4578999999999999999999999999999999999998
Q ss_pred -------------CceEEEEECCeEEeechhhhhhcCCc---cCcCHHHHHHHH
Q 013518 376 -------------TGFTVGPVNGRHAYIPFNRINERQNQ---VVITDRMWARVL 413 (441)
Q Consensus 376 -------------tg~mVg~~~~~~~~vPl~~v~~~~k~---v~~~~~~~~~~l 413 (441)
+++|||+++++++++||+++.+..-. -.|+..||..+.
T Consensus 876 ~~~~~~~~~~~~~~~~~vG~~~~~i~~~pi~e~~~~~~d~~~r~p~~~~w~~~~ 929 (941)
T 3opy_B 876 NSISFRQTDEITSTAVVLGIHKSQLRFTPIRQLYDFESDVPRRMRKNIFWSNVR 929 (941)
T ss_dssp SCSCCCCCHHHHTTEEEEEECC-CEEEEEHHHHHHTSCCTTTTCC-CCSTHHHH
T ss_pred ccccccccccCCCceEEEEEECCEEEEEEHHHHHhhccchhhcCCcchHHHhHH
Confidence 89999999999999999998754222 225566887653
No 7
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=6e-85 Score=713.28 Aligned_cols=387 Identities=21% Similarity=0.264 Sum_probs=330.6
Q ss_pred cccccccchhhhCCCCCCCcCCCCCCcccccccccccccChhHHHHHHhccCC-----CCcccccccC--------Cccc
Q 013518 18 YVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAG--------PRQK 84 (441)
Q Consensus 18 ~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~--------~r~~ 84 (441)
++.+||.++++..|+++.+++.+.+|+.++.|++++++.++.|..+++ +++| +|+.+|.+++ ++..
T Consensus 316 lG~~AV~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~-~~~~~~a~~~rg~~f~~~~~~~~~~~~~~~~ 394 (762)
T 3o8l_A 316 MGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMD-EKRFDEAMKLRGRSFMNNWEVYKLLAHIRPP 394 (762)
T ss_dssp HHHHHHHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHH-SSCHHHHHHHHCTHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhc-cchHHHHHHhhCchHHHHHHHHHHhcCCCCc
Confidence 468999999999999999999999999999999999999999999887 6666 5889998765 1111
Q ss_pred ccccCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccccccccc
Q 013518 85 VYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR 164 (441)
Q Consensus 85 ~~~~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR 164 (441)
. ...+++||||+||||||||||++||++|+++.. .+.+||||++||+||+++++++|+|++|++|+++|||+|||+|
T Consensus 395 ~-~~~~~~~IgIltsGGdapGmNaaIravv~~~~~--~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGTsR 471 (762)
T 3o8l_A 395 A-PKSGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI--QGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSKR 471 (762)
T ss_dssp C-CCSSCCEEEEEEESSCCTTHHHHHHHHHHHHHH--HTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSCSSCEEC
T ss_pred c-ccccCCEEEEEecCCCcHHHHHHHHHHHHHHHH--CCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCceeecCC
Confidence 1 124568999999999999999999999998863 3579999999999999999999999999999999999999999
Q ss_pred CC--CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcC-CCceEEEeeccccCCCCCCCCCCChhhHHHHHHH
Q 013518 165 GG--HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG-LKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQR 241 (441)
Q Consensus 165 ~~--~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~-~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~ 241 (441)
+. +++++++++|++++||+||+||||||+++|++|+++++++. ++|+|||||||||||+++||+|||||||+|++++
T Consensus 472 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~~~~~ 551 (762)
T 3o8l_A 472 TLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICT 551 (762)
T ss_dssp CCSGGGHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHHHHHH
Confidence 85 47899999999999999999999999999999999988774 6899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhhhhhhccCCc---chhhh-
Q 013518 242 AINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSMNQQDASGNK---LLQDV- 316 (441)
Q Consensus 242 ~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~~~~d~~G~~---~l~~i- 316 (441)
+||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||.||+++++ +.++...++-+.|+. .+.++
T Consensus 552 aid~i~~tA~ssh~rv~vVEvMGR~aG~lAl~aglA~-gad~ilIPE~~~~l~~~~~~i~~~~~r~~~~~~~~iVvvaEg 630 (762)
T 3o8l_A 552 TCDRIKQSAAGTKRRVFIIETMGGYCGYLATMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKTTVKRGLVLRNEK 630 (762)
T ss_dssp HHHHHTTTTCSSSCEEEEEEECSTTCCHHHHHHHHHT-TCSEEECSSSCCCHHHHHHHHHHHHHHHTSSCSEEEEEEETT
T ss_pred HHHHHHHHHHhCCCcEEEEEeCCcchhHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHHHHHHHhcCCCceEEEEECC
Confidence 9999999998777899999999999999999999999 79999999999999987 223322222222221 12111
Q ss_pred ------HHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcC---------------C
Q 013518 317 ------GLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG---------------Y 375 (441)
Q Consensus 317 ------~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G---------------~ 375 (441)
++++++.+++.- .. .+++|...|||+||||.|+++||++|++||.+||+++++| +
T Consensus 631 a~~~~~~~~~~~~~~~~~--~~--~~d~R~tvLGH~QRGG~Pta~DRilatr~g~~Av~~l~~g~~~~~~~g~~~~~~~~ 706 (762)
T 3o8l_A 631 CNENYTTDFIFNLYSEEG--KG--IFDSRKNVLGHMQQGGSPTPFDRNFATKMGAKAMNWMAGKIKESYRNGRIFANTPD 706 (762)
T ss_dssp SCSSSCHHHHHHHHHHHT--TT--TCEEEEEECCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTBCSSSBCCCSST
T ss_pred CCccchHHHHHHHHHhhc--cC--CceEEEeeCchhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccccccccccccccCC
Confidence 456666665431 12 2467889999999999999999999999999999999987 7
Q ss_pred CceEEEEECCeEEeechhhhhhcCCc--cCcCHHHHHHHH
Q 013518 376 TGFTVGPVNGRHAYIPFNRINERQNQ--VVITDRMWARVL 413 (441)
Q Consensus 376 tg~mVg~~~~~~~~vPl~~v~~~~k~--v~~~~~~~~~~l 413 (441)
+++|||+++++++++||+++..+... -.|+..||..+.
T Consensus 707 ~~~~vg~~~~~i~~~pl~e~~~~~d~~~r~~~~~~w~~~~ 746 (762)
T 3o8l_A 707 SGCVLGMRKRALVFQPVTELQNQTDFEHRIPKEQWWLKLR 746 (762)
T ss_dssp TEEEEEEETTEEEEEEHHHHGGGEETTTTEESSCGGGGTH
T ss_pred ceEEEEEECCEEEEEEHHHHhhccchhhcCCCCchHHhHH
Confidence 99999999999999999998764321 225677886543
No 8
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=100.00 E-value=2.5e-83 Score=643.72 Aligned_cols=304 Identities=30% Similarity=0.407 Sum_probs=270.4
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-----
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG----- 166 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~----- 166 (441)
+|||||||||||||||++||++++++. +.+.+||||++||+||+++++++|+|++|++|+++|||+|||||++
T Consensus 2 krIgIltsGG~~pG~Na~ir~vv~~a~--~~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt~lgtsR~~~~~~~ 79 (319)
T 4a3s_A 2 KRIGVLTSGGDSPGMNAAVRAVVRKAI--YHDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKTV 79 (319)
T ss_dssp CEEEEEEESSCCTTHHHHHHHHHHHHH--HTTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSCTTCCCCCHHHHSH
T ss_pred CEEEEECcCCCcHHHHHHHHHHHHHHH--HCCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCCccccCCCCccccH
Confidence 489999999999999999999999885 3457999999999999999999999999999999999999999984
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHH
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA 246 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i 246 (441)
+++++++++|++++||+||+|||||||++|++|+++ .++|||||||||||+++||+|||||||+++++++|+++
T Consensus 80 e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~------~i~vigiPkTIDNDl~~td~t~GfdTA~~~~~~ai~~i 153 (319)
T 4a3s_A 80 EGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH------GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI 153 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHT------TCCEEEEEEETTCCCTTCSCCEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcc------CCcEEEeeccccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999763 46799999999999999999999999999999999999
Q ss_pred HHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhhhhhhccCCc---chhh----hHH
Q 013518 247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSMNQQDASGNK---LLQD----VGL 318 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~~~~d~~G~~---~l~~----i~~ 318 (441)
+++|+|+ +||||||+|||+|||||++++||+ +||+|||||.||+++++ +.+++. ...|+. .+.. ...
T Consensus 154 ~~~a~s~-~rv~ivEvMGR~aG~lA~~a~la~-ga~~iliPE~~~~~~~~~~~i~~~---~~~g~~~~iivvaEG~~~~~ 228 (319)
T 4a3s_A 154 RDTATSH-ERTYVIEVMGRHAGDIALWAGLAG-GAESILIPEADYDMHEIIARLKRG---HERGKKHSIIIVAEGVGSGV 228 (319)
T ss_dssp HHHHHHH-TCEEEEEECCTTCCHHHHHHHHHH-TCSEEEBTTBCCCHHHHHHHHHHH---HTTTCCCEEEEEETTTCCHH
T ss_pred Hhhhhcc-CCeEEEEeCCcchhHHHHHHHhcc-CCCEEEecCCCCCHHHHHHHHHHH---HHcCCCceEEEEECCCCcch
Confidence 9999886 579999999999999999999999 89999999999999987 333322 222221 1111 155
Q ss_pred HHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCeEEeechhhhhhc
Q 013518 319 WISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINER 398 (441)
Q Consensus 319 ~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~~~~~vPl~~v~~~ 398 (441)
++++.++++++. ++|+++|||+|||++|+++||++|++||.+||+++++|+||+||++++++++++||+++++.
T Consensus 229 ~~~~~~~~~~g~------~~r~~~lGh~qRgg~psa~Dr~~a~~lG~~AV~~~~~G~~g~mv~~~~~~~~~~pl~~~~~~ 302 (319)
T 4a3s_A 229 EFGKRIEEETNL------ETRVSVLGHIQRGGSPSAADRVLASRLGAYAVELLLEGKGGRCVGIQNNKLVDHDIIEILET 302 (319)
T ss_dssp HHHHHHHHHHCC------CEEEEECGGGGGCSSCCHHHHHHHHHHHHHHHHHHTTTCCSEEEEEETTEEEEEEHHHHSSS
T ss_pred HHHHHHHHhCCc------eEEEcchhHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCEEEEEeHHHHHhc
Confidence 778888887753 46889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCcCHHHHHHHHH
Q 013518 399 QNQVVITDRMWARVLS 414 (441)
Q Consensus 399 ~k~v~~~~~~~~~~l~ 414 (441)
+|+++++..+..+.|+
T Consensus 303 ~k~v~~~~~~~a~~l~ 318 (319)
T 4a3s_A 303 KHTVEQNMYQLSKELS 318 (319)
T ss_dssp CCCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhcC
Confidence 9999987666665554
No 9
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=100.00 E-value=2.1e-82 Score=656.45 Aligned_cols=308 Identities=18% Similarity=0.256 Sum_probs=266.2
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcC--CcEEEEEcccccccccCCeeeC---ChhhhhccccccccccccccC
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYG--VSKILGIDGGYRGFYSKNTINL---TPKVVNDIHKRGGTILGTSRG 165 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~--~~~v~Gi~~G~~GL~~~~~~~L---~~~~v~~~~~~GGs~LGssR~ 165 (441)
..||+|+||||||||||++||++|+++.+ ++ ..+||||++||+||+++++++| +|+++++|+++|||+|||||+
T Consensus 3 ~kni~VltsGGdapGmNa~Ir~vv~~a~~-~g~~~~~V~Gi~~G~~GLl~~~~~~l~~~~~~~v~~i~~~GGtiLGSsR~ 81 (419)
T 3hno_A 3 AKNAFYAQSGGVTAVINASAAGVIEAARK-QSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISALRYTPSGAFGSCRY 81 (419)
T ss_dssp CCEEEEEECSSCCSSHHHHHHHHHHHHHH-HCSSCCCEEEETTTHHHHHTTCEEEGGGSCHHHHHHGGGCCSCTTCCCCC
T ss_pred CceEEEEccCCChHHHHHHHHHHHHHHHH-cCCCCcEEEEEeCChHHhCCCCcccCccccHHHHHHHHcCCCceecCCCC
Confidence 35999999999999999999999998864 33 2399999999999999999988 555899999999999999998
Q ss_pred CC--------CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHH
Q 013518 166 GH--------DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 237 (441)
Q Consensus 166 ~~--------~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~ 237 (441)
+. ++++++++|++++||+||+|||||||++|++|++++++++++++||||||||||||++||+|||||||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~ 161 (419)
T 3hno_A 82 KLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAK 161 (419)
T ss_dssp C------CHHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHH
Confidence 53 4789999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCc---eEEEEEecCCCccHHHHHHhhcc----CCCCEEEcCCCCCChhhH-HHHH---------
Q 013518 238 EAQRAINAAHVEAESIEN---GIGVVKLMGRYCGFIAMYATLGS----RDVDCCLIPESPFYLEGE-ESLQ--------- 300 (441)
Q Consensus 238 ~~~~~i~~i~~~a~s~~~---rv~iVEvMGr~~G~LA~~~aLA~----~~ad~iliPE~~~~l~~~-e~l~--------- 300 (441)
+++++|+++..++.|+++ ||||||||||+|||||+++|||+ ++||+|||||.||+++++ +.++
T Consensus 162 ~~~~~i~~~~~d~~ss~~sh~rv~iVEvMGR~aG~lAl~aglA~~~~~~gad~ilIPE~~f~~~~~~~~i~~~~~~~~~~ 241 (419)
T 3hno_A 162 YIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQKFLAKVDSCVKKFGYC 241 (419)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCEEEEEECCSSCCHHHHGGGGGCCSSSCCCEEEECTTSCCCHHHHHHHHHHHHHHHSCE
T ss_pred HHHHHHHHHHHHHHhhccCCCcEEEEEcCCcChhHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCE
Confidence 999999998444444343 89999999999999999999993 279999999999999987 1111
Q ss_pred -----------------hhhhhhccCCcchhhhHHHHHHHHHHHhccccceeeeeeeeCCCceeccCC--CCcchHHHHH
Q 013518 301 -----------------SMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIP--SNASDNVYCT 361 (441)
Q Consensus 301 -----------------~~~~~d~~G~~~l~~i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~--p~a~Dr~~a~ 361 (441)
....+|++||+++++++.+|+++|+++++. ++|+++|||+|||++ ||++||++|+
T Consensus 242 iIvVaEG~~~~~g~~i~~~~~~D~~G~~~l~gi~~~la~~i~~~~g~------~~R~~~lGh~QRgg~p~ps~~Dr~la~ 315 (419)
T 3hno_A 242 SVVVSEGVKGDDGKFLSDQGVRDAFGHAQLGGVAPVVASMVKEGLGL------KYHWGVADYLQRAARHIASKTDVEQAY 315 (419)
T ss_dssp EEEEETTCCCSSSCC---------------CCSHHHHHHHHHHHHCC------CEEEEECTHHHHSCGGGCBHHHHHHHH
T ss_pred EEEEeCCCcccCCcchhcccccccccCcccCcHHHHHHHHHHHHhCC------ceEEcccchhhccCCCCCCHHHHHHHH
Confidence 012468999999999999999999999863 478899999999999 8999999999
Q ss_pred HHHHHHHHHHHcCCCceEEEEECC-------eEEeechhhhhhcCCccCcC
Q 013518 362 LLAQSAVHGAVAGYTGFTVGPVNG-------RHAYIPFNRINERQNQVVIT 405 (441)
Q Consensus 362 ~lG~~AV~~~~~G~tg~mVg~~~~-------~~~~vPl~~v~~~~k~v~~~ 405 (441)
+||.+||+++++|++|+||+++++ +++.+||+++++.+|+++++
T Consensus 316 ~lG~~Av~~~~~G~~g~mv~~~~~~~~~y~~~~~~vpl~~~~~~~k~v~~~ 366 (419)
T 3hno_A 316 AMGQAAVEFAVQGHNSVMPTIERISARPYQWKVGMAQLSQVANVEKMMPEN 366 (419)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEEEEEC-CCEEEEEEEEHHHHSSCCCCCCGG
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCccccEEEEeeHHHHhcccCCCCHH
Confidence 999999999999999999999986 69999999999988888743
No 10
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=1.2e-82 Score=701.30 Aligned_cols=389 Identities=19% Similarity=0.240 Sum_probs=328.0
Q ss_pred cccccccchhhhCCCCCCCcCCCCCCcccccccccccccChhHHHHHHhccCC-----CCcccccccCC--------c--
Q 013518 18 YVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGP--------R-- 82 (441)
Q Consensus 18 ~~~eav~~l~~~~p~~p~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~--------r-- 82 (441)
++.+||.++++..++++.+++.+.+|++++.|+++++..++.|.+++. +++| +|+++|.+++. .
T Consensus 511 lG~~AV~~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~-~k~f~~a~~lr~~~F~~~~~~~~~~~~~~~~ 589 (989)
T 3opy_A 511 QGVDAVRAVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIE-AKDFDKALQLRDQEFATSYENFLSVSKYDDG 589 (989)
T ss_dssp HHHHHHHHHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHH-TTCHHHHHHTSCHHHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhh-ccCHHHHHhccChHHHHHHHHHHHhccCCCc
Confidence 468999999999999999999999999999999999999999999998 7887 79999998861 1
Q ss_pred ccccccCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccc-cCCeeeCChhhhhccccccccccc
Q 013518 83 QKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY-SKNTINLTPKVVNDIHKRGGTILG 161 (441)
Q Consensus 83 ~~~~~~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~-~~~~~~L~~~~v~~~~~~GGs~LG 161 (441)
......++++||||+||||||||||++||++|+++.. .+.+||||++||+||+ ++++++|+|.+|++|+++|||+||
T Consensus 590 ~~~~p~~~~~rIgIltsGGdaPGmNAaIravV~~a~~--~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGTiLG 667 (989)
T 3opy_A 590 SYLVPESSRLNIAIIHVGAPTSALNPATRVATLNSLA--KGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGSEIG 667 (989)
T ss_dssp SSCCCGGGCCEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSCSSC
T ss_pred cccCCccCCceEEEEecCCCCHHHHHHHHHHHHHHHH--CCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCcEec
Confidence 1111123568999999999999999999999998853 4579999999999999 999999999999999999999999
Q ss_pred cccCC--CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc-CCCceEEEeeccccCCCCCCCCCCChhhHHHH
Q 013518 162 TSRGG--HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (441)
Q Consensus 162 ssR~~--~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~ 238 (441)
|+|+. +++++++++|++++||+||+|||||||++|++|++++.++ .++|+||||||||||||++||+|||||||+|+
T Consensus 668 TsR~~~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAvn~ 747 (989)
T 3opy_A 668 TNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNT 747 (989)
T ss_dssp CBCCCGGGGHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHHH
T ss_pred cCCCCchhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHHHH
Confidence 99984 4789999999999999999999999999999999876554 35789999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhhhhh--hccCC-----
Q 013518 239 AQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSMNQQ--DASGN----- 310 (441)
Q Consensus 239 ~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~~~~--d~~G~----- 310 (441)
++++||+++++|.|+++||||||||||+|||||+++|||+ +||+|||||.||+++++ +.++...+. ...|+
T Consensus 748 ~~eaId~i~~tA~ssh~RvfIVEVMGR~aG~LAl~agLA~-GAd~ilIPE~~f~l~~l~~~i~~l~~~~~~~~g~~~~~~ 826 (989)
T 3opy_A 748 LSGYCDAVKQSASASRRRTFVVEVQGGYSGYLASYAGLIT-GALAVYTPENPINLQTVQEDIELLTRTYEEDDGKNRSGK 826 (989)
T ss_dssp HHHHHHHHHHHTC-CCCSEEEEEECCTTCSHHHHHHHHHH-TCSCEECTTSCCCHHHHHHHHHHHHHHHTTCC---CCCE
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCcchhHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHHHHHHHHHhccCCccce
Confidence 9999999999999877899999999999999999999999 89999999999999988 223221111 11221
Q ss_pred cchhh-------hHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCC--------
Q 013518 311 KLLQD-------VGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGY-------- 375 (441)
Q Consensus 311 ~~l~~-------i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~-------- 375 (441)
..+.+ -+..|+++|+++.+. . +.+|+..|||+||||.|+++||++|++||.+||++++++.
T Consensus 827 IIvvaEga~~~~~~~~la~~i~e~~~~--~--~e~R~tvLGHiQRGG~Psa~DRilAtr~G~~Ave~l~~~~~~~~~~~~ 902 (989)
T 3opy_A 827 IFIHNEKASKVYTTDLIAAIIGEAGKG--R--FESRTAVPGHVQQGKSPSSIDRVNACRLAIKCCNFIEDANFQVKHNAN 902 (989)
T ss_dssp EEEEESSSCSSSCHHHHHHHHHHTTTT--T--SCEEEECCGGGGGCSSCCHHHHHHHHHHHHHHHHHHTCGGGSCCSBSC
T ss_pred EEEEeCCCcCCCCHHHHHHHHHHhcCC--C--ceeEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 22222 156888888876531 1 4578899999999999999999999999999999999866
Q ss_pred -------------------------------CceEEEEECCeEEeechhhhhhcCC---ccCcCHHHHHHHHH
Q 013518 376 -------------------------------TGFTVGPVNGRHAYIPFNRINERQN---QVVITDRMWARVLS 414 (441)
Q Consensus 376 -------------------------------tg~mVg~~~~~~~~vPl~~v~~~~k---~v~~~~~~~~~~l~ 414 (441)
+.+++|+++.++.+.|++++....- .-.+...||..+..
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~l~~~~~d~~~r~p~~~~W~~~~~ 975 (989)
T 3opy_A 903 LSADERHLRFFYDDGVKTSAVSGKSSVIDDNTSVVIGIQGSEVTFTPVKQLWENETHHKWRKGKNVHWEQLNI 975 (989)
T ss_dssp CCHHHHHHTEEEETTEEEETTTCSSCCCCGGGEEEEEEETTEEEEEEHHHHHHHSCTTTC----CCCCHHHHH
T ss_pred cccccccccccccccccccccccccccCCCCcEEEEEEECCEEEEEEHHHhhhhccchhhCCCcChHHHhHHH
Confidence 3569999999999999999853221 12255668876643
No 11
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=100.00 E-value=1.3e-79 Score=653.72 Aligned_cols=376 Identities=24% Similarity=0.343 Sum_probs=305.2
Q ss_pred hhhCCCCCCCcCCCCCCc-ccccccccccccChhHHHHHHhccCC-----CCcccccccCCcccccccCCCeeEEEEccC
Q 013518 27 TDYIPDLPTYPNPLQFNA-AYSVVKQYFVNVDDTVSQKIVVHKDS-----PRGTHFRRAGPRQKVYFVSDEVHACIVTCG 100 (441)
Q Consensus 27 ~~~~p~~p~~~~~l~~n~-~~~~~~~~~v~~t~~v~~~~~~~~~~-----~~~~~f~~~~~r~~~~~~~~~~~iaIl~sG 100 (441)
+++.|.+|+. |++.. .++ .+..+.++.+...-.+.+.| .+-..|..+.++. ..++.+||||+|||
T Consensus 11 ~~~~p~lp~~---l~~~~~~~~---~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~---~~~~~~~igIltsG 81 (555)
T 2f48_A 11 QKYIPKLPNI---LKKDFNNIS---LVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSL---SFSKALNIGIILSG 81 (555)
T ss_dssp TTCCCCCCGG---GGSCGGGEE---EEECCCCCCSSCHHHHHHHTTTTTTCCCEEEEESCCCC---SCCSCCEEEEEEBS
T ss_pred hcCCCCCCHH---HhCCcccee---eecCCcccCccCHHHHHHhCccccCCCcEEEecCCccc---ccCCCcEEEEECcC
Confidence 3688888886 54410 122 22233333333322223333 2445677665431 13556899999999
Q ss_pred CCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccc-cccccccCCC----CHHHHHHH
Q 013518 101 GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGG-TILGTSRGGH----DTSKIVDS 175 (441)
Q Consensus 101 G~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GG-s~LGssR~~~----~~~~i~~~ 175 (441)
|||||||++||++++++...+++.+||||++||+||+++++++|+|++|++|+++|| |+|||+|++. ++++++++
T Consensus 82 GdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~~~~ 161 (555)
T 2f48_A 82 GPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFV 161 (555)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHHHH
T ss_pred CCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHHHHH
Confidence 999999999999999976567788999999999999999999999999999999999 7999999853 47899999
Q ss_pred HHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC--CCCCChhhHHHHHHHHHHHHHHhhhcC
Q 013518 176 IQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDTAVEEAQRAINAAHVEAESI 253 (441)
Q Consensus 176 l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t--d~s~GfdTA~~~~~~~i~~i~~~a~s~ 253 (441)
|++++||+||+||||||+++|++|+++++++++.|+|||||||||||+++| |+|||||||+++++++|++++.||.|+
T Consensus 162 l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~~~~~aId~i~~da~s~ 241 (555)
T 2f48_A 162 AKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMST 241 (555)
T ss_dssp HHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999887 999999999999999999999999998
Q ss_pred CceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCC----CChhhH------------------------HHHH-----
Q 013518 254 ENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESP----FYLEGE------------------------ESLQ----- 300 (441)
Q Consensus 254 ~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~----~~l~~~------------------------e~l~----- 300 (441)
++||||||||||+|||||+++|||+ +||+|||||.+ ++++++ |.+.
T Consensus 242 ~~rv~iVEvMGR~aG~lAl~a~LA~-gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaEG~~~~~~~ 320 (555)
T 2f48_A 242 KKYWHFVKLMGRSASHVALECALKT-HPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEFIPE 320 (555)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH-CCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGGGTSHH
T ss_pred CCcEEEEEeCCcCHHHHHHHHHhhc-CCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCCccccch
Confidence 8889999999999999999999999 79999999985 665432 1110
Q ss_pred ---------------------------------------------------h-h----hhhhccCCcchhhh--HHHHHH
Q 013518 301 ---------------------------------------------------S-M----NQQDASGNKLLQDV--GLWISH 322 (441)
Q Consensus 301 ---------------------------------------------------~-~----~~~d~~G~~~l~~i--~~~l~~ 322 (441)
. . .++|++||+++.++ +.+|++
T Consensus 321 ~~~li~el~~~l~~~~~~~~~l~~~~~~~~~~~~Ls~~~~~~~~~lp~~i~~~l~~~~~~~D~~Gn~~l~~i~t~~~L~~ 400 (555)
T 2f48_A 321 VKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIE 400 (555)
T ss_dssp HHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHHHHHHH
T ss_pred HHHHHHHHhhhhhcccccccccccccchhhhhhccchhhhhhhccchHHHHHHhhccccccCCCCCEeeccccHHHHHHH
Confidence 0 0 24688999999887 556666
Q ss_pred HHHHHhccccc-----eeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHHHHHcCCCceEEEEECCe-------EEee
Q 013518 323 KIKDHFARLHK-----MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGR-------HAYI 390 (441)
Q Consensus 323 ~I~~~~~~~~~-----~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~~~~~G~tg~mVg~~~~~-------~~~v 390 (441)
.|+++++.+.+ ..++.+...|||+|||+.||++||+||++||..||+++++|+||+||++++++ +..+
T Consensus 401 ~v~~~l~~~~~~~~~~~~~~~r~~~lGy~qRgg~PS~~Dr~la~~lG~~Av~~~~~G~tG~mv~i~~~~~~~~~w~~~~v 480 (555)
T 2f48_A 401 MIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGV 480 (555)
T ss_dssp HHHHHHHHHHTTTCCCSCCCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGGCEEEEE
T ss_pred HHHHHHHHHhcccCcccceeeeeccCCcchhCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccceEEEee
Confidence 66665542211 12456777799999999999999999999999999999999999999999976 8999
Q ss_pred chhhhhhcC------------CccCcCHHHHHHH
Q 013518 391 PFNRINERQ------------NQVVITDRMWARV 412 (441)
Q Consensus 391 Pl~~v~~~~------------k~v~~~~~~~~~~ 412 (441)
||.++++.+ ..||.++..|+.+
T Consensus 481 Pl~~~~n~ek~~g~~~p~i~~~~Vdl~~~~f~~~ 514 (555)
T 2f48_A 481 PLTMLMNMEERYGEKKPVIKKALVDLEGRPFKEF 514 (555)
T ss_dssp EGGGGEEEEEETTEEEEEECCCCCCTTSHHHHHH
T ss_pred eHHHHhhhhhhcCccccceeeeeeCCCCHHHHHH
Confidence 999998753 4466776666543
No 12
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=100.00 E-value=5.7e-78 Score=658.34 Aligned_cols=326 Identities=21% Similarity=0.341 Sum_probs=285.0
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CeeeCChhhhhccccccccccccccCCC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGGH 167 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (441)
+.+||||+||||||||||++||++|+.+. +.+.+||||++||+||+++ ++++|+|++|++|+++|||+|||+|+++
T Consensus 14 ~~krIaIltsGGdaPGmNaaIravvr~a~--~~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~~ 91 (762)
T 3o8l_A 14 VGKAIAVLTSGGDAQGMNAAVRAVVRVGI--FTGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCKD 91 (762)
T ss_dssp SSCEEEEECCSSCCTTHHHHHHHHHHHHH--HTTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCCG
T ss_pred cCcEEEEEccCCCchhHhHHHHHHHHHHH--HCCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCCc
Confidence 45699999999999999999999999875 4568999999999999999 8999999999999999999999999863
Q ss_pred -----CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHH-----------------HHHcCCCceEEEeeccccCCCCC
Q 013518 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-----------------IRQRGLKVAVAGIPKTIDNDIPV 225 (441)
Q Consensus 168 -----~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~-----------------~~~~~~~i~vvgIPkTIDNDi~~ 225 (441)
++++++++|++++||+||+||||||+++|+.|+++ +.++++.++|||||||||||+++
T Consensus 92 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~g 171 (762)
T 3o8l_A 92 FREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCG 171 (762)
T ss_dssp GGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSS
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCC
Confidence 46799999999999999999999999999988654 23346689999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChh---hH-HHHHh
Q 013518 226 IDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLE---GE-ESLQS 301 (441)
Q Consensus 226 td~s~GfdTA~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~---~~-e~l~~ 301 (441)
||+|||||||+++++++|++++++|.|| +|+||||||||+|||||+++|||+ +||+|||||.||+++ .+ +.++.
T Consensus 172 TD~TiGfdTA~~~i~eaid~i~~tA~Sh-~Rv~iVEvMGR~aG~LAl~aglA~-gad~ilIPE~p~~~~~~~~~~~~i~~ 249 (762)
T 3o8l_A 172 TDMTIGTDSALHRITEIVDAITTTAQSH-QRTFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSE 249 (762)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHTTCCSS-CCEEEEEECCSSCCHHHHHHHHHH-TCSBCCCTTSCCCSSCHHHHHHHHHH
T ss_pred CcCCcCchhHHHHHHHHHHHHHHhhhcC-ccEEEEEeCCcchhHHHHHHHHhc-CCCEEEecCCCCCcchHHHHHHHHHH
Confidence 9999999999999999999999999986 579999999999999999999999 799999999999984 33 22221
Q ss_pred hh--------------hhhccCCcchhhhHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHH
Q 013518 302 MN--------------QQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSA 367 (441)
Q Consensus 302 ~~--------------~~d~~G~~~l~~i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~A 367 (441)
.. -.|++|+... +.+|++.|+++++. .+|+..|||+|||++|+++||++|++||.+|
T Consensus 250 ~~~~gk~~~iVvVaEGa~d~~G~~i~---~~~l~~~i~~~~g~------~~R~tvLGh~QRgg~Psa~Dr~lat~lG~~A 320 (762)
T 3o8l_A 250 TRTRGSRLNIIIVAEGAIDRNGKPIT---SEGVKDLVVRRLGY------DTRVTVLGHVQRGGTPSAFDRILGSRMGVEA 320 (762)
T ss_dssp HHHTTCSCCBBCEETTCCCSSSCCCC---HHHHHHHHHHHTCC------CEEEECCCSSTTCSCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCceEEEEeCCccCCCCCCcH---HHHHHHHHHHHhCC------CcceeecCccccCCCCChHHHHHHHHHHHHH
Confidence 10 1234444332 56899999888763 4678899999999999999999999999999
Q ss_pred HHHHHcCC---CceEEEEECCeEEeechhhhhhcCCccCc--CHHHHHHHHHhcCCCCCCChHHHHH
Q 013518 368 VHGAVAGY---TGFTVGPVNGRHAYIPFNRINERQNQVVI--TDRMWARVLSSTNQPSFLSANELAK 429 (441)
Q Consensus 368 V~~~~~G~---tg~mVg~~~~~~~~vPl~~v~~~~k~v~~--~~~~~~~~l~~t~qp~~~~~~~~~~ 429 (441)
|+++++|+ +++||++++++++++||+++...+|.|++ +..+|.+.+..+|+ +|..+-+.+.
T Consensus 321 V~~~~~g~~~~~~~~v~~~~~~i~~~Pl~e~~~~~k~v~~~~~~~~~~~a~~~rg~-~f~~~~~~~~ 386 (762)
T 3o8l_A 321 VMALLEGTPDTPACVVSLSGNQAVRLPLMECVQVTKDVTKAMDEKRFDEAMKLRGR-SFMNNWEVYK 386 (762)
T ss_dssp HHHHHTCCTTSCCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHSSCHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHcCCCCCceEEEEEECCEEEEEEHHHHHhccCCCChhhccchHHHHHHhhCc-hHHHHHHHHH
Confidence 99999999 89999999999999999999999999886 56789999999986 4766544443
No 13
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-77 Score=650.80 Aligned_cols=328 Identities=21% Similarity=0.312 Sum_probs=281.0
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC---eeeCChhhhhccccccccccccccCCC
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN---TINLTPKVVNDIHKRGGTILGTSRGGH 167 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~---~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (441)
.+||||+||||||||||++||++|+++.+ + +.+||||++||+||++++ +.+|+|++|++|+++|||+|||+|+++
T Consensus 3 ~krIgIltsGGdapGmNaaIravvr~a~~-~-g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 80 (766)
T 3o8o_B 3 QKAIAVMTSGGDAPGMNSNVRAIVRSAIF-K-GCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCME 80 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHH-H-TCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CcEEEEEeeCCCchhHHHHHHHHHHHHHH-C-CCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCc
Confidence 46999999999999999999999998863 3 469999999999999986 789999999999999999999999863
Q ss_pred -----CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHH-----------------HHHcCCCceEEEeeccccCCCCC
Q 013518 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-----------------IRQRGLKVAVAGIPKTIDNDIPV 225 (441)
Q Consensus 168 -----~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~-----------------~~~~~~~i~vvgIPkTIDNDi~~ 225 (441)
++.+++++|++++||+||+||||||+++|++|+++ ..+++..++|||||||||||+++
T Consensus 81 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~g 160 (766)
T 3o8o_B 81 FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMST 160 (766)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCC
Confidence 35689999999999999999999999999988653 23345678999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhh-h
Q 013518 226 IDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSM-N 303 (441)
Q Consensus 226 td~s~GfdTA~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~-~ 303 (441)
||+|||||||+++++++||+++++|.|| +|+||||||||+|||||+++|||+ +||+|||||.||+++++ +.+... .
T Consensus 161 TD~TiGfdTA~~~i~eaid~i~~tA~Sh-~RvfvVEvMGR~aG~LAl~aglA~-gAd~ilIPE~p~~~~~~~~~v~~~i~ 238 (766)
T 3o8o_B 161 TDATIGAYSALDRICKAIDYVEATANSH-SRAFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPATSSEWQDQMCDIVS 238 (766)
T ss_dssp CSCCBTHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCTTCCHHHHHHHHHH-TCSEEECTTCCCCTTHHHHHHHHHHH
T ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCcchhHHHHHHHHhc-CCCEEEccCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999986 579999999999999999999999 79999999999999866 222211 1
Q ss_pred hhhccCCcc---hhh-----------hHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHH
Q 013518 304 QQDASGNKL---LQD-----------VGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVH 369 (441)
Q Consensus 304 ~~d~~G~~~---l~~-----------i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~ 369 (441)
+....|+.. +.+ .+.++++.|+++++ +++|+++|||+|||++|+++||++|++||.+||+
T Consensus 239 ~~~~~gk~~~IVvVaEGa~~~~~~~~~~~~l~~~i~~~~g------~~~R~tvLGh~QRGG~Psa~DR~lAt~~G~~AV~ 312 (766)
T 3o8o_B 239 KHRSRGKRTTIVVVAEGAIAADLTPISPSDVHKVLVDRLG------LDTRITTLGHVQRGGTAVAYDRILATLQGLEAVN 312 (766)
T ss_dssp HHHHTTCCCEEEEEETTCBCTTSCBCCHHHHHHHHHHTTC------CCEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCceEEEEeCCcccccCCcchHHHHHHHHHHHhC------CceeEcccChhhcCCCCChhhHHHHHHHHHHHHH
Confidence 111222211 111 25678888887765 3468888999999999999999999999999999
Q ss_pred HHHcCCC---ceEEEEECCeEEeechhhhhhcCCccCc--CHHHHHHHHHhcCCCCCCChHHHHH
Q 013518 370 GAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVVI--TDRMWARVLSSTNQPSFLSANELAK 429 (441)
Q Consensus 370 ~~~~G~t---g~mVg~~~~~~~~vPl~~v~~~~k~v~~--~~~~~~~~l~~t~qp~~~~~~~~~~ 429 (441)
++++|++ |+|||+++++++.+||++++.++|.|.. +..+|.+.++.. .++|..+-+.++
T Consensus 313 ~~~~g~~~~~~~mv~~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr-~~~f~~~~~~~~ 376 (766)
T 3o8o_B 313 AVLESTPDTPSPLIAVNENKIVRKPLMESVKLTKAVAEAIQAKDFKRAMSLR-DTEFIEHLNNFM 376 (766)
T ss_dssp HHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHS-CTTHHHHHHHHH
T ss_pred HHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCccHHHHhcCCHHHHHHcc-CHHHHHHHHHHH
Confidence 9999997 8999999999999999999998888873 466788888874 588987765554
No 14
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-77 Score=652.87 Aligned_cols=328 Identities=21% Similarity=0.338 Sum_probs=279.6
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CeeeCChhhhhccccccccccccccCCC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGGH 167 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (441)
+++||||+||||||||||++||++|+++.+ .+.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|+++
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~~--~g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 81 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGIH--FGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSME 81 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHHH--CCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCCc
Confidence 457999999999999999999999998863 457999999999999998 6999999999999999999999999863
Q ss_pred -----CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHH-------H----------HHcCCCceEEEeeccccCCCCC
Q 013518 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-------I----------RQRGLKVAVAGIPKTIDNDIPV 225 (441)
Q Consensus 168 -----~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~-------~----------~~~~~~i~vvgIPkTIDNDi~~ 225 (441)
++.+++++|++++||+||+||||||+++|.+|+++ + .+++..++|||||||||||+++
T Consensus 82 f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~g 161 (787)
T 3o8o_A 82 FRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSG 161 (787)
T ss_dssp GGSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCC
Confidence 35689999999999999999999999999987643 2 2234679999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhh-h
Q 013518 226 IDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSM-N 303 (441)
Q Consensus 226 td~s~GfdTA~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~-~ 303 (441)
||+|||||||+++++++||+|+++|.|| +||||||||||+|||||+++|||+ +||+|||||.||+++++ +.+... .
T Consensus 162 TD~TiGfdTAl~~i~eaid~i~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~-gAd~ilIPE~p~~~~~~~~~v~~~i~ 239 (787)
T 3o8o_A 162 TDSTIGAYSALERICEMVDYIDATAKSH-SRAFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQDELKEVCQ 239 (787)
T ss_dssp SSCCEEHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCTTCCHHHHHHHHHT-TCSEEECGGGCBCTTTHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCcchhHHHHHHHHhh-CCCEEEeCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999996 579999999999999999999999 79999999999999866 222211 1
Q ss_pred hhhccCCc---chhh-----------hHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHH
Q 013518 304 QQDASGNK---LLQD-----------VGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVH 369 (441)
Q Consensus 304 ~~d~~G~~---~l~~-----------i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~ 369 (441)
+....|+. .+.. .+..+++.|++ ++ +.+|...|||+|||++|+++||++|++||.+||+
T Consensus 240 ~~~~~gk~~~IVvVaEGa~~~~~~~~~~~~~~~~i~~-~g------~~~R~tvLGh~QRGG~Psa~DRilAtrlG~~AV~ 312 (787)
T 3o8o_A 240 RHRSKGRRNNTIIVAEGALDDQLNPVTANDVKDALIE-LG------LDTKVTILGHVQRGGTAVAHDRWLATLQGVDAVK 312 (787)
T ss_dssp HHHHTTCCCEEEEEETTCBBTTSCBCCHHHHHHHHHH-HT------CCEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCceEEEEeCCCccccCcchhHHHHHHHHHH-hC------CcceeeccCHhhcCCCCChHHHHHHHHHHHHHHH
Confidence 11112221 1111 14567777776 54 3467788999999999999999999999999999
Q ss_pred HHHcCCC---ceEEEEECCeEEeechhhhhhcCCccC--cCHHHHHHHHHhcCCCCCCChHHHHH
Q 013518 370 GAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVV--ITDRMWARVLSSTNQPSFLSANELAK 429 (441)
Q Consensus 370 ~~~~G~t---g~mVg~~~~~~~~vPl~~v~~~~k~v~--~~~~~~~~~l~~t~qp~~~~~~~~~~ 429 (441)
++++|++ ++|||+++++++++||++++.++|.|. .+..+|.+.++.. .++|..+-+.+.
T Consensus 313 ~l~~g~~~~~~~mVg~~~~~i~~~pl~~~~~~~k~v~~~~~~~~~~~a~~lr-~~~f~~~~~~~~ 376 (787)
T 3o8o_A 313 AVLEFTPETPSPLIGILENKIIRMPLVESVKLTKSVATAIENKDFDKAISLR-DTEFIELYENFL 376 (787)
T ss_dssp HHHTCCSSCCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTS-CTTHHHHHHHHH
T ss_pred HHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhcCCHHHHHhcc-CHHHHHHHHHHH
Confidence 9999997 799999999999999999999888887 5677889888874 578987765554
No 15
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=2.7e-76 Score=650.80 Aligned_cols=328 Identities=20% Similarity=0.312 Sum_probs=279.0
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC--CeeeCChhhhhccccccccccccccCCC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK--NTINLTPKVVNDIHKRGGTILGTSRGGH 167 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~--~~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (441)
..+||||+||||||||||++||++|+++.. .+.+||||++||+||+++ ++.+|+|++|++|+++|||+|||+|++.
T Consensus 209 ~~krIaIlTSGGdaPGmNAaIRaVVr~a~~--~G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~~ 286 (989)
T 3opy_A 209 GKKKIAIITSGGDAPGMNAAVRAVTRAGIF--YGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKE 286 (989)
T ss_dssp CSEEEEEEECSSCCTTHHHHHHHHHHHHHH--TTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSSS
T ss_pred cCCEEEEEeeCCCchhHHHHHHHHHHHHHH--CCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCCc
Confidence 357999999999999999999999998853 457999999999999998 5899999999999999999999999853
Q ss_pred -----CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHH-----------------HHcCCCceEEEeeccccCCCCC
Q 013518 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI-----------------RQRGLKVAVAGIPKTIDNDIPV 225 (441)
Q Consensus 168 -----~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~-----------------~~~~~~i~vvgIPkTIDNDi~~ 225 (441)
++.+++++|++++||+||+||||||+++|++|++++ .+++..++|||||||||||+++
T Consensus 287 f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 287 FRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp TTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred ccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 367899999999999999999999999999987542 2234678999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhh-h
Q 013518 226 IDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSM-N 303 (441)
Q Consensus 226 td~s~GfdTA~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~-~ 303 (441)
||+|||||||+++++++||+++++|.|| +|+||||||||+|||||+++|||+ +||+|||||.||+++++ +.+... .
T Consensus 367 TD~TiGFdTAl~~i~eaId~I~~TA~Sh-~RvfVVEVMGR~aG~LAl~agLA~-GAd~IlIPE~pf~l~~~~~~l~~~i~ 444 (989)
T 3opy_A 367 TDSTIGAYSSLERIIELVDYIDATAASH-SRAFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERPPSESNWKDDLKKVCL 444 (989)
T ss_dssp CSCCEEHHHHHHHHHHHHHHHHSSCCCT-TEEEEEECCCSSCTHHHHHHHHHH-TCSEEECTTSCCCTTTHHHHHHHHHH
T ss_pred CCCCCChhhHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCchhHHHHHHHHhc-CCCEEEeCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999985 689999999999999999999999 79999999999999776 222221 1
Q ss_pred hhhccCCc---chhh-----------hHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHH
Q 013518 304 QQDASGNK---LLQD-----------VGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVH 369 (441)
Q Consensus 304 ~~d~~G~~---~l~~-----------i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~ 369 (441)
+....|+. .+.. .+..+++.|++ ++ +.+|...|||+|||++|+++||++|++||.+||+
T Consensus 445 k~~~~Gk~~~IVVVAEGa~~~~~~~i~~~~l~~~l~~-~G------~dtR~tvLGHiQRGG~Psa~DRilAtrlG~~AV~ 517 (989)
T 3opy_A 445 RHREKGRRKTTVIVAEGAIDDQLNPITSEEVKDVLVE-IG------LDTRITRLGHVQRGGAPCAFDRFLATVQGVDAVR 517 (989)
T ss_dssp HHHHTTCCEEEEEECTTCBCTTSCBCCHHHHHHHHHT-TT------CEEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCceEEEEeCCccccccccchHHHHHHHHHH-hC------cchhhhhhhHHHcCCCCChhhHHHHHHHHHHHHH
Confidence 11222321 1111 14456666664 43 4578888999999999999999999999999999
Q ss_pred HHHcCCC---ceEEEEECCeEEeechhhhhhcCCccC--cCHHHHHHHHHhcCCCCCCChHHHHH
Q 013518 370 GAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVV--ITDRMWARVLSSTNQPSFLSANELAK 429 (441)
Q Consensus 370 ~~~~G~t---g~mVg~~~~~~~~vPl~~v~~~~k~v~--~~~~~~~~~l~~t~qp~~~~~~~~~~ 429 (441)
++++|++ ++|||+++++++++||++++.++|.|+ .+..+|.+.++.. .++|..+-+.+.
T Consensus 518 ~l~~g~~~~~g~mVgl~~~~iv~vPl~e~v~~~k~V~~a~~~k~f~~a~~lr-~~~F~~~~~~~~ 581 (989)
T 3opy_A 518 AVLESTPAIPSPVISILENKIVRQPLVESVAQTKTVSAAIEAKDFDKALQLR-DQEFATSYENFL 581 (989)
T ss_dssp HHHTCCTTSCCEEEEESSSSEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHTS-CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCeEEEEECCEEEEEEHHHHHhccCCchHhhhccCHHHHHhcc-ChHHHHHHHHHH
Confidence 9999986 799999999999999999999888887 5577888888874 478877655444
No 16
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=100.00 E-value=3.1e-76 Score=651.85 Aligned_cols=328 Identities=22% Similarity=0.327 Sum_probs=277.6
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC---eeeCChhhhhccccccccccccccCCC
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN---TINLTPKVVNDIHKRGGTILGTSRGGH 167 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~---~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (441)
.+||||+||||||||||++||++|+++.+ .+.+||||++||+||++++ +.+|+|++|++|+++|||+|||+|+++
T Consensus 181 ~krIgIlTsGGdaPGmNAaIRaVVr~a~~--~g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~~ 258 (941)
T 3opy_B 181 RKTIGVMTSGGDSPGMNPFVRAVVRAGIY--KGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKE 258 (941)
T ss_dssp CCCEEEEECSSCCTTHHHHHHHHHHHHHH--TTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCSG
T ss_pred CCEEEEEeeCcCchhHHHHHHHHHHHHHH--CCCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCCc
Confidence 57999999999999999999999998853 4579999999999999986 889999999999999999999999863
Q ss_pred -----CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHH-----------------HHHHcCCCceEEEeeccccCCCCC
Q 013518 168 -----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYE-----------------EIRQRGLKVAVAGIPKTIDNDIPV 225 (441)
Q Consensus 168 -----~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~-----------------~~~~~~~~i~vvgIPkTIDNDi~~ 225 (441)
++.+++++|++++||+||+||||||+++|+.|++ +..+++..++|||||||||||+++
T Consensus 259 f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~g 338 (941)
T 3opy_B 259 FRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSS 338 (941)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSS
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCCC
Confidence 3567999999999999999999999999998764 234456679999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHhhhcCCceEEEEEecCCCccHHHHHHhhccCCCCEEEcCCCCCChhhH-HHHHhh-h
Q 013518 226 IDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE-ESLQSM-N 303 (441)
Q Consensus 226 td~s~GfdTA~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~~-e~l~~~-~ 303 (441)
||+|||||||+++++++||+|+++|.|| +||||||||||+|||||+++|||+ +||+|||||.||+++++ +.+... .
T Consensus 339 TD~TiGfdTAv~~i~eaId~I~~tA~Sh-~RvfvVEVMGR~aG~LAl~agLA~-GAd~IlIPE~p~~~~~~~~~v~~~i~ 416 (941)
T 3opy_B 339 TDATIGAFSSLDRICRAIDYIDATANSH-SRAFIVEVMGRHCGWLGLLAGLAT-SADYILIPEKPASSREWQDQMCDIVG 416 (941)
T ss_dssp CSSCEEHHHHHHHHHHHHHHHHSCC-CC-SEEEEEECCCSSCCHHHHHHHHHT-TCSEEECTTSCCCSSCHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHhhhhcc-CceEEEEcCCCcccHHHHHHHHhc-CCCEEEECCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999986 579999999999999999999999 79999999999999765 222211 1
Q ss_pred hhhccCCc---chhh-----------hHHHHHHHHHHHhccccceeeeeeeeCCCceeccCCCCcchHHHHHHHHHHHHH
Q 013518 304 QQDASGNK---LLQD-----------VGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVH 369 (441)
Q Consensus 304 ~~d~~G~~---~l~~-----------i~~~l~~~I~~~~~~~~~~~~~~r~i~pgy~qRgg~p~a~Dr~~a~~lG~~AV~ 369 (441)
+....|+. .+.. .+..+++.|+++++ +.+|+.+|||+||||+|+++||++|++||.+||+
T Consensus 417 ~~~~~gk~~~IVVVAEGa~~~~~~~i~~~~l~~~i~~~~g------~d~R~tvLGhiQRGG~Psa~DRilAtrlG~~AV~ 490 (941)
T 3opy_B 417 KHRARGKRKTIVIVAEGAISNDLSPISCDQVKDVLVNRLG------LDTRVTTLGHVQRGGTAVAFDRIYATLQGVEAVN 490 (941)
T ss_dssp HHHHHTCCCEEEEECTTCBCTTCCBCCHHHHHHHHHHTSC------CEEEEEECGGGGTCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcEEEEEeCCcccccCCcchHHHHHHHHHHHhC------CceeecccChhhcCCCCChhhHHHHHHHHHHHHH
Confidence 11112221 1111 25678888877654 3478888999999999999999999999999999
Q ss_pred HHHcCCC---ceEEEEECCeEEeechhhhhhcCCccCc--CHHHHHHHHHhcCCCCCCChHHHHH
Q 013518 370 GAVAGYT---GFTVGPVNGRHAYIPFNRINERQNQVVI--TDRMWARVLSSTNQPSFLSANELAK 429 (441)
Q Consensus 370 ~~~~G~t---g~mVg~~~~~~~~vPl~~v~~~~k~v~~--~~~~~~~~l~~t~qp~~~~~~~~~~ 429 (441)
++++|++ |+|||+++++++++||++++.++|.|.. +..+|.+.++.. .++|..+-+.++
T Consensus 491 ~l~~g~~~~~g~mVg~~~~~iv~~Pl~e~v~~~k~v~~a~~~~~f~~a~~lr-~~~f~~~~~~~~ 554 (941)
T 3opy_B 491 AVLECDADTPSPMIAIKEDQITRVPLVDAVELTQQVAKSIESRNFKKAISLR-DSEFVEHMKNFI 554 (941)
T ss_dssp HHHHCCTTSCCEEEEESSSCEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHcCCCCCCceEEEEECCEEEEEEHHHHHhccCCcHHHHhcCCHHHHHHcc-CHHHHHHHHHHH
Confidence 9999997 7999999999999999999998888763 456777777764 477876654444
No 17
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=94.83 E-value=0.031 Score=54.18 Aligned_cols=89 Identities=17% Similarity=0.112 Sum_probs=50.0
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (441)
.|++|+.-.+ .+..+..++.+.+.+.+ . +.+++.......++-. .| ... ...+.
T Consensus 6 kki~ii~np~-~~~~~~~~~~i~~~l~~-~-g~~v~~~~~~~~~~~~-----------------~~----~~~--~~~~~ 59 (292)
T 2an1_A 6 KCIGIVGHPR-HPTALTTHEMLYRWLCD-Q-GYEVIVEQQIAHELQL-----------------KN----VPT--GTLAE 59 (292)
T ss_dssp CEEEEECC--------CHHHHHHHHHHH-T-TCEEEEEHHHHHHTTC-----------------SS----CCE--ECHHH
T ss_pred cEEEEEEcCC-CHHHHHHHHHHHHHHHH-C-CCEEEEecchhhhccc-----------------cc----ccc--cchhh
Confidence 4799998755 36677888888887754 3 3567655443333210 01 000 01111
Q ss_pred HHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEee
Q 013518 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (441)
Q Consensus 172 i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (441)
...+.|.+|++|||||+..|..... +..++++|||
T Consensus 60 -----~~~~~D~vi~~GGDGT~l~a~~~~~-----~~~~P~lGI~ 94 (292)
T 2an1_A 60 -----IGQQADLAVVVGGDGNMLGAARTLA-----RYDINVIGIN 94 (292)
T ss_dssp -----HHHHCSEEEECSCHHHHHHHHHHHT-----TSSCEEEEBC
T ss_pred -----cccCCCEEEEEcCcHHHHHHHHHhh-----cCCCCEEEEE
Confidence 2346899999999999887654332 2357899998
No 18
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=93.10 E-value=0.048 Score=52.63 Aligned_cols=45 Identities=31% Similarity=0.376 Sum_probs=30.2
Q ss_pred HHHHHHHHHhC-------CCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeec
Q 013518 170 SKIVDSIQDRG-------INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (441)
Q Consensus 170 ~~i~~~l~~~~-------Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (441)
+++.+.|++++ .|.+|++|||||+..|..... ....++|++|||.
T Consensus 18 ~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~~---~~~~~~PilGIn~ 69 (272)
T 2i2c_A 18 LNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYE---ERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHTG---GGTTTCEEEEEES
T ss_pred HHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHHh---hcCCCCCEEEEeC
Confidence 44555555554 599999999999976654321 1112688999985
No 19
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=91.91 E-value=0.055 Score=52.86 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=44.3
Q ss_pred HHHHHHHHHHh---------------CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChh
Q 013518 169 TSKIVDSIQDR---------------GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFD 233 (441)
Q Consensus 169 ~~~i~~~l~~~---------------~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~Gfd 233 (441)
.+++.+.|+++ +.|.+|++|||||+..|..... .. +||+||.. -++||-
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~aa~~~~-----~~-~PilGIN~----------G~lGFL 105 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK-----RC-PPIFGINT----------GRVGLL 105 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTCS-----SC-CCEEEEEC----------SSSCTT
T ss_pred HHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHHHHHhC-----CC-CcEEEECC----------CCCccc
Confidence 66777777776 4588999999999965543321 33 89999984 288988
Q ss_pred hHH--HHHHHHHHHHHH
Q 013518 234 TAV--EEAQRAINAAHV 248 (441)
Q Consensus 234 TA~--~~~~~~i~~i~~ 248 (441)
|.+ +.+.++++++..
T Consensus 106 t~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 106 THASPENFEVELKKAVE 122 (278)
T ss_dssp CCBBTTBCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHh
Confidence 765 344556666554
No 20
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=85.37 E-value=0.22 Score=47.49 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=34.0
Q ss_pred hCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH--HHHHHHHHHHH
Q 013518 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAH 247 (441)
Q Consensus 179 ~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~--~~~~~~i~~i~ 247 (441)
.+.|.+|++|||||+..+..... + .++++||+. | |.||-+.+ +.+.++++.+.
T Consensus 40 ~~~D~vv~~GGDGTll~~a~~~~-----~-~~PilGIn~-------G---~~Gfl~~~~~~~~~~al~~i~ 94 (258)
T 1yt5_A 40 VTADLIVVVGGDGTVLKAAKKAA-----D-GTPMVGFKA-------G---RLGFLTSYTLDEIDRFLEDLR 94 (258)
T ss_dssp BCCSEEEEEECHHHHHHHHTTBC-----T-TCEEEEEES-------S---SCCSSCCBCGGGHHHHHHHHH
T ss_pred CCCCEEEEEeCcHHHHHHHHHhC-----C-CCCEEEEEC-------C---CCCccCcCCHHHHHHHHHHHH
Confidence 36899999999999876543321 3 688999972 2 44665544 23344555543
No 21
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=82.06 E-value=25 Score=32.16 Aligned_cols=128 Identities=8% Similarity=0.054 Sum_probs=71.3
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCH
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~ 169 (441)
+..+||++...-.-|-...++.++.+.+.+ ++ .++.-+ .+.......
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 50 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIER-LG-GTAIAL-------------------------------DAGRNDQTQ 50 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEEE-------------------------------cCCCCHHHH
Confidence 446899999877777777788888877753 33 222211 011111224
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHHHHh
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 249 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i~~~ 249 (441)
...++.|...++|++++.+.+.+.. ....+.+.+.+ +|||.+ |++.+....++++|-.- ....+.+.+...
T Consensus 51 ~~~~~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~V~~D~~~-~g~~~~~~l~~~ 121 (291)
T 3l49_A 51 VSQIQTLIAQKPDAIIEQLGNLDVL--NPWLQKINDAG--IPLFTV----DTATPHAINNTTSNNYS-IGAELALQMVAD 121 (291)
T ss_dssp HHHHHHHHHHCCSEEEEESSCHHHH--HHHHHHHHHTT--CCEEEE----SCCCTTCSEEEEECHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CcEEEe----cCCCCCcCceEecChHH-HHHHHHHHHHHH
Confidence 5678888899999999998874332 22334455555 557765 34433323355554321 122233333332
Q ss_pred hhcCCceEEEE
Q 013518 250 AESIENGIGVV 260 (441)
Q Consensus 250 a~s~~~rv~iV 260 (441)
... +++|.++
T Consensus 122 ~~g-~~~i~~i 131 (291)
T 3l49_A 122 LGG-KGNVLVF 131 (291)
T ss_dssp HTT-CEEEEEE
T ss_pred cCC-CceEEEE
Confidence 344 3567777
No 22
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=81.38 E-value=33 Score=31.59 Aligned_cols=162 Identities=9% Similarity=0.039 Sum_probs=87.1
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC-CCC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHD 168 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~ 168 (441)
+..+|+++.....-|=...++.++.+.+.+ ++ .++.-+ ..+.. ...
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 49 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQA-LN-VTVEYR-------------------------------GAAQYDIQE 49 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHH-HT-CEEEEE-------------------------------ECSSSCHHH
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHH-cC-CEEEEe-------------------------------CCCcCCHHH
Confidence 456899999888888888899998887754 33 232211 11111 122
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC--CCCCChhhHHHHHHHHHHHH
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDTAVEEAQRAINAA 246 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t--d~s~GfdTA~~~~~~~i~~i 246 (441)
..+.++.|...++|++++.+.+.+.. ....+.+.+.+ +|||.+ |++++.. ..++++|-. .....+.+.+
T Consensus 50 ~~~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~d~~-~~g~~~~~~l 120 (305)
T 3g1w_A 50 QITVLEQAIAKNPAGIAISAIDPVEL--TDTINKAVDAG--IPIVLF----DSGAPDSHAHSFLGTNNY-NAGMNAAYKM 120 (305)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE----SSCCTTSCCSCEEECCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEcCCCHHHH--HHHHHHHHHCC--CcEEEE----CCCCCCCceeEEECcCHH-HHHHHHHHHH
Confidence 44677888889999999998776521 11223344445 557754 5555442 245665542 1222333333
Q ss_pred HHhhhcCCceEEEEEecC------CCccHHHHHHhhccCCCCEEEcCCCCCChhh
Q 013518 247 HVEAESIENGIGVVKLMG------RYCGFIAMYATLGSRDVDCCLIPESPFYLEG 295 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEvMG------r~~G~LA~~~aLA~~~ad~iliPE~~~~l~~ 295 (441)
...... +++|.++--.+ |..||........- ..+.+.+.+..++.+.
T Consensus 121 ~~~~~g-~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~~~ 173 (305)
T 3g1w_A 121 AELLDG-EGEVAVITLPNQLNHQERTTGFKETLEAEFP-AIEVIAVEDGRGDSLH 173 (305)
T ss_dssp HHHTTT-CEEEEEEECTTCHHHHHHHHHHHHHHHHHCT-TEEEEEEEECTTCHHH
T ss_pred HHHhCC-CcEEEEEeCCCcccHHHHHHHHHHHHHhhCC-CCEEEEEecCCCCHHH
Confidence 333224 45788876443 33355544332211 2344455455566543
No 23
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=75.64 E-value=1.5 Score=44.41 Aligned_cols=129 Identities=19% Similarity=0.171 Sum_probs=69.1
Q ss_pred cccccCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccc--cccCCeeeCChhhhhccccccccccc
Q 013518 84 KVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRG--FYSKNTINLTPKVVNDIHKRGGTILG 161 (441)
Q Consensus 84 ~~~~~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~G--L~~~~~~~L~~~~v~~~~~~GGs~LG 161 (441)
++.+.....+|+|++= -..|.+-..++.+++.+.. .+.+||-=..=.+- +.+. .....+ .. .+-
T Consensus 31 ~l~w~~~~k~I~iv~K-~~~~~~~~~~~~l~~~L~~--~~~~V~ve~~~~~~~~~~~~----~~~~~~---~~----~~~ 96 (365)
T 3pfn_A 31 RLTWNKSPKSVLVIKK-MRDASLLQPFKELCTHLME--ENMIVYVEKKVLEDPAIASD----ESFGAV---KK----KFC 96 (365)
T ss_dssp BEEESSCCCEEEEEEC-TTCGGGHHHHHHHHHHHHH--TSCEEEEEHHHHHSHHHHHC----STTHHH---HH----HCE
T ss_pred ccccCCCCCEEEEEec-CCCHHHHHHHHHHHHHHHH--CCCEEEEehHHhhhhccccc----cccccc---cc----ccc
Confidence 3444445569999984 2357788889999988864 34566521110000 0000 000000 00 000
Q ss_pred cccCCCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHH--HH
Q 013518 162 TSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EA 239 (441)
Q Consensus 162 ssR~~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~--~~ 239 (441)
+.+ .+++.+ ..++|.+|++|||||+-.|..+.. +..+||+||=. -++||-|-++ .+
T Consensus 97 ~~~--~~~~~~-----~~~~DlvI~lGGDGT~L~aa~~~~-----~~~~PvlGiN~----------G~LGFLt~~~~~~~ 154 (365)
T 3pfn_A 97 TFR--EDYDDI-----SNQIDFIICLGGDGTLLYASSLFQ-----GSVPPVMAFHL----------GSLGFLTPFSFENF 154 (365)
T ss_dssp EEC--TTTCCC-----TTTCSEEEEESSTTHHHHHHHHCS-----SSCCCEEEEES----------SSCTTTCCEESTTH
T ss_pred ccc--cChhhc-----ccCCCEEEEEcChHHHHHHHHHhc-----cCCCCEEEEcC----------CCCccceeecHHHH
Confidence 000 011111 147899999999999877665532 45678999853 3788877533 35
Q ss_pred HHHHHHHHH
Q 013518 240 QRAINAAHV 248 (441)
Q Consensus 240 ~~~i~~i~~ 248 (441)
.++++++..
T Consensus 155 ~~~l~~vl~ 163 (365)
T 3pfn_A 155 QSQVTQVIE 163 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 556665543
No 24
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=75.24 E-value=26 Score=33.32 Aligned_cols=86 Identities=13% Similarity=-0.011 Sum_probs=52.8
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (441)
..+||++...-.-|=...+++++.+.+.+ ++ .+++-.. +....+...
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~~ 114 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLED-TE-LQPVVGV-------------------------------TDYLPEKEE 114 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTS-SS-SEEEEEE-------------------------------CTTCHHHHH
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHHH
Confidence 35899999776777778888888777642 22 2332110 000112234
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
+.++.|...++|++++.+-+.+-. +.+.+.+.+ +|+|.+
T Consensus 115 ~~i~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~i 153 (344)
T 3kjx_A 115 KVLYEMLSWRPSGVIIAGLEHSEA----ARAMLDAAG--IPVVEI 153 (344)
T ss_dssp HHHHHHHTTCCSEEEEECSCCCHH----HHHHHHHCS--SCEEEE
T ss_pred HHHHHHHhCCCCEEEEECCCCCHH----HHHHHHhCC--CCEEEE
Confidence 677888899999999998776542 223344455 456655
No 25
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=73.92 E-value=1.6 Score=42.60 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=24.4
Q ss_pred HhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeec
Q 013518 178 DRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (441)
Q Consensus 178 ~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (441)
..+.|.++++|||||+..|...... . .++++||+.
T Consensus 73 ~~~~d~vi~~GGDGT~l~a~~~~~~---~--~~pvlgi~~ 107 (307)
T 1u0t_A 73 ADGCELVLVLGGDGTFLRAAELARN---A--SIPVLGVNL 107 (307)
T ss_dssp ---CCCEEEEECHHHHHHHHHHHHH---H--TCCEEEEEC
T ss_pred ccCCCEEEEEeCCHHHHHHHHHhcc---C--CCCEEEEeC
Confidence 3568999999999998876654332 2 467999983
No 26
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=70.19 E-value=74 Score=29.99 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=80.6
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC-CCCH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~ 169 (441)
..+||++...-.-|-...++.++-+.+.+ ++ .++.- ..+.. ....
T Consensus 62 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 107 (339)
T 3h5o_A 62 SRTVLVLIPSLANTVFLETLTGIETVLDA-AG-YQMLI--------------------------------GNSHYDAGQE 107 (339)
T ss_dssp -CEEEEEESCSTTCTTHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTCHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCChHHH
Confidence 35899999777778788888888877753 33 23221 11111 1123
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhh--HHHHHHHHHHHHH
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDT--AVEEAQRAINAAH 247 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdT--A~~~~~~~i~~i~ 247 (441)
.+.++.|...++|++++.+-+.+-. +.+.+.+.+ +|+|.+=...+.+ ..++++|- +...+++ .+.
T Consensus 108 ~~~~~~l~~~~vdGiIi~~~~~~~~----~~~~l~~~~--iPvV~~~~~~~~~----~~~V~~D~~~~~~~a~~---~L~ 174 (339)
T 3h5o_A 108 LQLLRAYLQHRPDGVLITGLSHAEP----FERILSQHA--LPVVYMMDLADDG----RCCVGFSQEDAGAAITR---HLL 174 (339)
T ss_dssp HHHHHHHHTTCCSEEEEECSCCCTT----HHHHHHHTT--CCEEEEESCCSSS----CCEEECCHHHHHHHHHH---HHH
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCHH----HHHHHhcCC--CCEEEEeecCCCC----CeEEEECHHHHHHHHHH---HHH
Confidence 4677888899999999998765542 223333445 4577652222111 12555543 2333333 222
Q ss_pred HhhhcCCceEEEEEec------CCCccHHHHHHhhccCCCCEEEcCCCCCChhh
Q 013518 248 VEAESIENGIGVVKLM------GRYCGFIAMYATLGSRDVDCCLIPESPFYLEG 295 (441)
Q Consensus 248 ~~a~s~~~rv~iVEvM------Gr~~G~LA~~~aLA~~~ad~iliPE~~~~l~~ 295 (441)
. .. +++|.++--. -|..||..+.....-...+..++.+..++.+.
T Consensus 175 ~--~G-~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~ 225 (339)
T 3h5o_A 175 S--RG-KRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQM 225 (339)
T ss_dssp H--TT-CCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHH
T ss_pred H--CC-CCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHH
Confidence 2 24 4568777432 24446655433211101233344455666543
No 27
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=69.24 E-value=1.4 Score=44.96 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=36.1
Q ss_pred hCCCEEEEEcCCCchHHHHHHHHHHHHcCCCc-eEEEeeccccCCCCCCCCCCChhhHHH--HHHHHHHHHH
Q 013518 179 RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV-AVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAAH 247 (441)
Q Consensus 179 ~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i-~vvgIPkTIDNDi~~td~s~GfdTA~~--~~~~~i~~i~ 247 (441)
.+.|.+|++|||||+..|..... ...+ +|+||+. | ++||-|.++ .+.++++++.
T Consensus 113 ~~~DlVIvlGGDGTlL~aa~~~~-----~~~vpPiLGIN~-------G---~lGFLt~~~~~~~~~al~~il 169 (388)
T 3afo_A 113 NRTDLLVTLGGDGTILHGVSMFG-----NTQVPPVLAFAL-------G---TLGFLSPFDFKEHKKVFQEVI 169 (388)
T ss_dssp HHCSEEEEEESHHHHHHHHHTTT-----TSCCCCEEEEEC-------S---SCCSSCCEEGGGHHHHHHHHH
T ss_pred cCCCEEEEEeCcHHHHHHHHHhc-----ccCCCeEEEEEC-------C---CcccCCcCChHHHHHHHHHHh
Confidence 45899999999999987654432 2345 7999962 2 678777643 3445555544
No 28
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=66.55 E-value=7.6 Score=37.94 Aligned_cols=51 Identities=25% Similarity=0.297 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc--CCCceEEEeeccccCCCC
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR--GLKVAVAGIPKTIDNDIP 224 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~--~~~i~vvgIPkTIDNDi~ 224 (441)
++++.+...+.|.++++|||||+..+..-. .+. +.++++..||.==-||+.
T Consensus 73 ~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l---~~~~~~~~~plgiiP~Gt~N~fa 125 (332)
T 2bon_A 73 RYVEEARKFGVATVIAGGGDGTINEVSTAL---IQCEGDDIPALGILPLGTANDFA 125 (332)
T ss_dssp HHHHHHHHHTCSEEEEEESHHHHHHHHHHH---HHCCSSCCCEEEEEECSSSCHHH
T ss_pred HHHHHHHhcCCCEEEEEccchHHHHHHHHH---hhcccCCCCeEEEecCcCHHHHH
Confidence 444445556799999999999987754332 222 456788899985556553
No 29
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=66.08 E-value=70 Score=29.01 Aligned_cols=123 Identities=15% Similarity=0.065 Sum_probs=70.8
Q ss_pred CCeeEEEEccC-----CCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccccccccc
Q 013518 90 DEVHACIVTCG-----GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR 164 (441)
Q Consensus 90 ~~~~iaIl~sG-----G~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR 164 (441)
+..+||++... -.-|-...+++++.+.+.+ ++ .++.- ..+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~ 52 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV-EG-YALYM--------------------------------STGE 52 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------CCCC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHH-cC-CEEEE--------------------------------EeCC
Confidence 44589999987 6778888899998887753 33 22221 0111
Q ss_pred C-CCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC--CCCCChhh--HHHHH
Q 013518 165 G-GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDT--AVEEA 239 (441)
Q Consensus 165 ~-~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t--d~s~GfdT--A~~~~ 239 (441)
. .+...++++.+...++|++++.+.+.+-. ..+.+.+.+ +|||.+ |++.+.. -.++++|- +...+
T Consensus 53 ~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a 122 (292)
T 3k4h_A 53 TEEEIFNGVVKMVQGRQIGGIILLYSRENDR----IIQYLHEQN--FPFVLI----GKPYDRKDEITYVDNDNYTAAREV 122 (292)
T ss_dssp SHHHHHHHHHHHHHTTCCCEEEESCCBTTCH----HHHHHHHTT--CCEEEE----SCCSSCTTTSCEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEeCCCCChH----HHHHHHHCC--CCEEEE----CCCCCCCCCCCEEEECcHHHHHHH
Confidence 1 11235678888999999999998775543 233444445 557754 5555432 23455443 33333
Q ss_pred HHHHHHHHHhhhcCCceEEEEEe
Q 013518 240 QRAINAAHVEAESIENGIGVVKL 262 (441)
Q Consensus 240 ~~~i~~i~~~a~s~~~rv~iVEv 262 (441)
++.+-+ ..+ ++|.++--
T Consensus 123 ~~~L~~-----~G~-~~i~~i~~ 139 (292)
T 3k4h_A 123 AEYLIS-----LGH-KQIAFIGG 139 (292)
T ss_dssp HHHHHH-----TTC-CCEEEEES
T ss_pred HHHHHH-----CCC-ceEEEEeC
Confidence 333322 243 56777753
No 30
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=65.96 E-value=74 Score=28.83 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=71.3
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (441)
.+||++...-.-|-...+++++-+.+.+ ++ .++.-+. +........+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~~~ 62 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSE-QG-YSMLLTS-------------------------------TNNNPDNERR 62 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCChHHHHH
Confidence 6899999888888888899998887753 33 2332110 1111122356
Q ss_pred HHHHHHHhCCCEEEEEcCCCchH-HHHHHHHHHHHcCCCceEEEeeccccCCCCCCC-CCCChhh--HHHHHHHHHHHHH
Q 013518 172 IVDSIQDRGINQVYIIGGDGTQK-GAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDT--AVEEAQRAINAAH 247 (441)
Q Consensus 172 i~~~l~~~~Id~LvvIGGdgs~~-~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td-~s~GfdT--A~~~~~~~i~~i~ 247 (441)
.++.|...++|++++.+.+.+.. ....+.+.+.+.+ +|||.+ |++.+..+ .++++|- +...+++ .+.
T Consensus 63 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~V~~d~~~~~~~a~~---~L~ 133 (298)
T 3tb6_A 63 GLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNG--IPFAMI----NASYAELAAPSFTLDDVKGGMMAAE---HLL 133 (298)
T ss_dssp HHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTT--CCEEEE----SSCCTTCSSCEEEECHHHHHHHHHH---HHH
T ss_pred HHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcC--CCEEEE----ecCcCCCCCCEEEeCcHHHHHHHHH---HHH
Confidence 78888899999999999875421 1122334444455 557754 44444322 2455443 3333333 332
Q ss_pred HhhhcCCceEEEEEec
Q 013518 248 VEAESIENGIGVVKLM 263 (441)
Q Consensus 248 ~~a~s~~~rv~iVEvM 263 (441)
. .. ++++.++--.
T Consensus 134 ~--~G-~~~i~~i~~~ 146 (298)
T 3tb6_A 134 S--LG-HTHMMGIFKA 146 (298)
T ss_dssp H--TT-CCSEEEEEES
T ss_pred H--CC-CCcEEEEcCC
Confidence 2 24 4567777543
No 31
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=65.70 E-value=47 Score=31.68 Aligned_cols=85 Identities=8% Similarity=0.024 Sum_probs=52.4
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC-CCCH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~ 169 (441)
..+||++...-.-|-...++.++.+.+.+ ++ .+++-. .+.. ....
T Consensus 70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~~ 115 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQ-GG-LQLLLG--------------------------------YTAYSPERE 115 (355)
T ss_dssp -CEEEEEESCSBCHHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------ECTTCHHHH
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCChHHH
Confidence 35899999776667777788888777653 22 233211 1111 1123
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
.+.++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+
T Consensus 116 ~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~--iPvV~i 155 (355)
T 3e3m_A 116 EQLVETMLRRRPEAMVLSYDGHTEQ----TIRLLQRAS--IPIVEI 155 (355)
T ss_dssp HHHHHHHHHTCCSEEEEECSCCCHH----HHHHHHHCC--SCEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEE
Confidence 4677888899999999998776643 223344445 557765
No 32
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=65.62 E-value=4.2 Score=39.81 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCC
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP 224 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~ 224 (441)
++++.+...+.|.++++|||||+..+..-. .+.+.++++.+||.==-||+.
T Consensus 71 ~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l---~~~~~~~pl~iIP~GT~N~lA 121 (337)
T 2qv7_A 71 LEAERAMHENYDVLIAAGGDGTLNEVVNGI---AEKPNRPKLGVIPMGTVNDFG 121 (337)
T ss_dssp HHHHHHTTTTCSEEEEEECHHHHHHHHHHH---TTCSSCCEEEEEECSSCCHHH
T ss_pred HHHHHHhhcCCCEEEEEcCchHHHHHHHHH---HhCCCCCcEEEecCCcHhHHH
Confidence 444455556789999999999987654332 223557899999986667764
No 33
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=63.40 E-value=11 Score=37.39 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFG 231 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~G 231 (441)
..+++++.+++++.|.+|-|||-=.++.|..++-. ++ +++|.||-| ++||-+.+
T Consensus 74 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~---~~--~p~i~IPTT-----a~tgSevt 127 (370)
T 1jq5_A 74 EVERIANIARKAEAAIVIGVGGGKTLDTAKAVADE---LD--AYIVIVPTA-----ASTDAPTS 127 (370)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---HT--CEEEEEESS-----CCSSCTTC
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHh---cC--CCEEEeccc-----cCCCcccC
Confidence 35688889999999999999998888888877732 24 689999999 66664444
No 34
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=60.80 E-value=81 Score=28.18 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=81.1
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (441)
.+||++...-.-|=...++.++-+.+.+ ++ .++.-+ -+........+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~~ 49 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARA-RG-YQLLIA-------------------------------SSDDQPDSERQ 49 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCCHHHHHH
Confidence 4899999877778888888888877753 33 233211 01111122456
Q ss_pred HHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCC-CCCChhh--HHHHHHHHHHHHHH
Q 013518 172 IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDT--AVEEAQRAINAAHV 248 (441)
Q Consensus 172 i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td-~s~GfdT--A~~~~~~~i~~i~~ 248 (441)
.++.|...++|++++.+.+.... ...+.+.+.+ +|+|. +|++++..+ .++++|- +...+++ .+..
T Consensus 50 ~~~~l~~~~vdgiIi~~~~~~~~---~~~~~~~~~~--iPvV~----~~~~~~~~~~~~V~~d~~~~~~~a~~---~L~~ 117 (272)
T 3o74_A 50 LQQLFRARRCDALFVASCLPPED---DSYRELQDKG--LPVIA----IDRRLDPAHFCSVISDDRDASRQLAA---SLLS 117 (272)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSC---CHHHHHHHTT--CCEEE----ESSCCCTTTCEEEEECHHHHHHHHHH---HHHT
T ss_pred HHHHHHHcCCCEEEEecCccccH---HHHHHHHHcC--CCEEE----EccCCCccccCEEEEchHHHHHHHHH---HHHH
Confidence 78888899999999998773321 1223344445 45764 455554332 2444442 3333333 3322
Q ss_pred hhhcCCceEEEEEecC-------CCccHHHHHHhhccCCCCEEEcCCCCCChhh
Q 013518 249 EAESIENGIGVVKLMG-------RYCGFIAMYATLGSRDVDCCLIPESPFYLEG 295 (441)
Q Consensus 249 ~a~s~~~rv~iVEvMG-------r~~G~LA~~~aLA~~~ad~iliPE~~~~l~~ 295 (441)
.. ++++.++--.- |..||.. ++...+.+...+....++.+.
T Consensus 118 --~G-~~~i~~i~~~~~~~~~~~R~~gf~~---~l~~~~~~~~~~~~~~~~~~~ 165 (272)
T 3o74_A 118 --SA-PRSIALIGARPELSVSQARAGGFDE---ALQGYTGEVRRYQGEAFSREC 165 (272)
T ss_dssp --TC-CSEEEEEEECTTSHHHHHHHHHHHH---HTTTCCSEEEEEEESSSSHHH
T ss_pred --CC-CcEEEEEecCCCCccHHHHHHHHHH---HHHHcCCChheeecCCCCHHH
Confidence 24 46777775432 2234433 344334444444444555543
No 35
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=60.50 E-value=99 Score=28.04 Aligned_cols=161 Identities=12% Similarity=0.007 Sum_probs=85.1
Q ss_pred CCeeEEEEccCC-CCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC-CC
Q 013518 90 DEVHACIVTCGG-LCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GH 167 (441)
Q Consensus 90 ~~~~iaIl~sGG-~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~ 167 (441)
+..+||++...- ..|=...++.++.+.+.+ .++..+.-..- ..+.. ..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~~g~~~~~~~~-----------------------------~~~~~~~~ 56 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTT-YSDFNISANIT-----------------------------HYDPYDYN 56 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHH-TGGGCEEEEEE-----------------------------EECSSCHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHH-HHhCCeEEEEE-----------------------------cCCCCCHH
Confidence 456999999876 788888888888887754 21112211100 00000 11
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCc-hHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC--CCCCChhh--HHHHHHHH
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGT-QKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDT--AVEEAQRA 242 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs-~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t--d~s~GfdT--A~~~~~~~ 242 (441)
...+.++.|...++|++++.+-+.. ... +.+.+.+.+ +|||.+ |++++.. ..++++|- +...+++.
T Consensus 57 ~~~~~i~~l~~~~vdgiii~~~~~~~~~~---~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a~~~ 127 (304)
T 3gbv_A 57 SFVATSQAVIEEQPDGVMFAPTVPQYTKG---FTDALNELG--IPYIYI----DSQIKDAPPLAFFGQNSHQSGYFAARM 127 (304)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSSGGGTHH---HHHHHHHHT--CCEEEE----SSCCTTSCCSEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCCChHHHHH---HHHHHHHCC--CeEEEE----eCCCCCCCceEEEecChHHHHHHHHHH
Confidence 2346678888999999999988754 222 223344445 457754 4555432 23455543 33333333
Q ss_pred HHHHHHhhhcCCceEEEEEe-----------cCCCccHHHHHHhhccCCCCEEEcCCCCCChh
Q 013518 243 INAAHVEAESIENGIGVVKL-----------MGRYCGFIAMYATLGSRDVDCCLIPESPFYLE 294 (441)
Q Consensus 243 i~~i~~~a~s~~~rv~iVEv-----------MGr~~G~LA~~~aLA~~~ad~iliPE~~~~l~ 294 (441)
+ ...... +++|.++-. .-|..||........- ..+...+.+..++.+
T Consensus 128 l---~~~g~~-~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~-~~~~~~~~~~~~~~~ 185 (304)
T 3gbv_A 128 L---MLLAVN-DREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHP-ACNILELNLHADLNI 185 (304)
T ss_dssp H---HHHSTT-CSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCT-TSEEEEEEEESSCSS
T ss_pred H---HHHhCC-CCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCC-CcEEEEeeecCCCHH
Confidence 3 222111 257877752 3356677765544322 234444444445544
No 36
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=60.48 E-value=23 Score=33.51 Aligned_cols=101 Identities=18% Similarity=0.323 Sum_probs=58.2
Q ss_pred ccccccCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccccccccc---------------CCeeeCChh
Q 013518 83 QKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---------------KNTINLTPK 147 (441)
Q Consensus 83 ~~~~~~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~---------------~~~~~L~~~ 147 (441)
+........++-++|.++|+-+- .++.+. +.. .-++++-.|..=|++ ||+--++++
T Consensus 12 ~~~~~~~~~~~~~lIv~ng~~~~---~~~~~~----~~~--~~~i~aDgGa~~l~~~~~~~~~~~~Pd~ivGD~DSi~~~ 82 (247)
T 3s4y_A 12 ENLYFQGGNLKYCLVILNQPLDN---YFRHLW----NKA--LLRACADGGANRLYDITEGERESFLPEFINGDFDSIRPE 82 (247)
T ss_dssp --------CCCEEEEECSSCCCT---THHHHH----HHC--SCEEEETTHHHHHHHHTTTCGGGCCCSEEEECCSSSCHH
T ss_pred ccccccCCCCCEEEEEECCcchH---HHHHHH----hhC--CEEEEEchHHHHHHHhccccccCCCccEEEcCCcCCCHH
Confidence 33444444567778888898772 333333 222 347888888655443 344455555
Q ss_pred hhhccccccccccccccC-CCCHHHHHHHHHHh------CCCEEEEEcCCCc
Q 013518 148 VVNDIHKRGGTILGTSRG-GHDTSKIVDSIQDR------GINQVYIIGGDGT 192 (441)
Q Consensus 148 ~v~~~~~~GGs~LGssR~-~~~~~~i~~~l~~~------~Id~LvvIGGdgs 192 (441)
..+.+...|-.++-..-. .-|++++++.+.+. +.+-++++|+.|.
T Consensus 83 ~~~~~~~~~~~i~~~peKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GG 134 (247)
T 3s4y_A 83 VREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAG 134 (247)
T ss_dssp HHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSS
T ss_pred HHHHHHhcCCEEEECCCCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCC
Confidence 555555555445432211 13688888877664 7899999999997
No 37
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=56.01 E-value=7 Score=37.70 Aligned_cols=86 Identities=20% Similarity=0.307 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHHH
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAH 247 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i~ 247 (441)
+..++++.+.+ +.|.++++|||||+..+. +.+.....++++..||.==-||+.- ++|...-.. ++++.+.
T Consensus 52 ~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~---~~l~~~~~~~~l~iiP~Gt~N~~ar---~lg~~~~~~---~a~~~i~ 121 (304)
T 3s40_A 52 DATKYCQEFAS-KVDLIIVFGGDGTVFECT---NGLAPLEIRPTLAIIPGGTCNDFSR---TLGVPQNIA---EAAKLIT 121 (304)
T ss_dssp HHHHHHHHHTT-TCSEEEEEECHHHHHHHH---HHHTTCSSCCEEEEEECSSCCHHHH---HTTCCSSHH---HHHHHHT
T ss_pred hHHHHHHHhhc-CCCEEEEEccchHHHHHH---HHHhhCCCCCcEEEecCCcHHHHHH---HcCCCccHH---HHHHHHH
Confidence 34455555544 889999999999987643 2222223568899999877777742 333332222 2333332
Q ss_pred HhhhcCCceEEEEEecCCC
Q 013518 248 VEAESIENGIGVVKLMGRY 266 (441)
Q Consensus 248 ~~a~s~~~rv~iVEvMGr~ 266 (441)
. ...+.+=+.++-+|.
T Consensus 122 ~---g~~~~iDlg~v~~~~ 137 (304)
T 3s40_A 122 K---EHVKPVDVAKANGQH 137 (304)
T ss_dssp T---CCEEEEEEEEETTEE
T ss_pred h---CCeEEEEEEEECCEE
Confidence 1 233456666665554
No 38
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=55.11 E-value=57 Score=30.01 Aligned_cols=89 Identities=8% Similarity=0.011 Sum_probs=54.3
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccc--cCCCC
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTS--RGGHD 168 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGss--R~~~~ 168 (441)
+.+||++...-..|-...+++++.+.+.+ ++ .++.- ..+. .....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 49 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEE-LK-VDLQI-------------------------------LAPPGANDVPK 49 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHH-HT-CEEEE-------------------------------ECCSSSCCHHH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHH-hC-cEEEE-------------------------------ECCCCcCCHHH
Confidence 46999999887788888888888887753 23 22220 0011 11122
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEee
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (441)
..+.++.|...++|++++.+-+.... ....+.+.+.+ |+||.+=
T Consensus 50 ~~~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~g--iPvV~~~ 93 (297)
T 3rot_A 50 QVQFIESALATYPSGIATTIPSDTAF--SKSLQRANKLN--IPVIAVD 93 (297)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCSSTT--HHHHHHHHHHT--CCEEEES
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHHH--HHHHHHHHHCC--CCEEEEc
Confidence 44678888889999999988766521 11223344445 5577543
No 39
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=54.90 E-value=70 Score=30.05 Aligned_cols=122 Identities=9% Similarity=0.000 Sum_probs=68.0
Q ss_pred CeeEEEEccC--CCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-C
Q 013518 91 EVHACIVTCG--GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-H 167 (441)
Q Consensus 91 ~~~iaIl~sG--G~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~ 167 (441)
..+||++... -..|=...++.++.+.+.+ ++ .++.-+ .+... .
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~ 106 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLLLA--------------------------------DGKHSAE 106 (338)
T ss_dssp CSEEEEEECTTTTSTTHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------ECTTSHH
T ss_pred CCEEEEEecCCcccChhHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCChH
Confidence 4589999976 5667777888888877753 33 222211 11111 1
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCC-CCCChhh--HHHHHHHHHH
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDT--AVEEAQRAIN 244 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td-~s~GfdT--A~~~~~~~i~ 244 (441)
...+.++.|...++|++++.+.+.+... +.+.+++.+ +|+|.+ |.+++..+ .++++|- +...+++
T Consensus 107 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~~~--iPvV~~----~~~~~~~~~~~V~~D~~~~~~~a~~--- 174 (338)
T 3dbi_A 107 EERQAIQYLLDLRCDAIMIYPRFLSVDE---IDDIIDAHS--QPIMVL----NRRLRKNSSHSVWCDHKQTSFNAVA--- 174 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSSCHHH---HHHHHHHCS--SCEEEE----SSCCSSSGGGEECBCHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCChHH---HHHHHHcCC--CCEEEE----cCCCCCCCCCEEEEChHHHHHHHHH---
Confidence 2345778889999999999987766432 333333444 557744 55554322 3455542 2333333
Q ss_pred HHHHhhhcCCceEEEEE
Q 013518 245 AAHVEAESIENGIGVVK 261 (441)
Q Consensus 245 ~i~~~a~s~~~rv~iVE 261 (441)
.+.. ..+ ++|.++-
T Consensus 175 ~L~~--~G~-~~I~~i~ 188 (338)
T 3dbi_A 175 ELIN--AGH-QEIAFLT 188 (338)
T ss_dssp HHHH--TTC-CSEEEEC
T ss_pred HHHH--CCC-CEEEEEe
Confidence 3322 244 5677763
No 40
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=54.08 E-value=1.3e+02 Score=27.54 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=50.4
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC-CCCH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~ 169 (441)
+.+||++...-..|-...++.++-+.+.+ ++ .++. +..+.. ....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~l~--------------------------------~~~~~~~~~~~ 47 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEK-RG-ITLK--------------------------------IADGQQKQENQ 47 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHH-HT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EeCCCCCHHHH
Confidence 36899999776667677777777766643 22 1221 001111 1123
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCch-HHHHHHHHHHHHcCCCceEEEe
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGTQ-KGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs~-~~a~~L~~~~~~~~~~i~vvgI 215 (441)
.+.++.|...++|++++.+.+.+. .. ..+.+.+.+ +|||.+
T Consensus 48 ~~~i~~l~~~~vdgiIi~~~~~~~~~~---~~~~~~~~~--iPvV~~ 89 (306)
T 2vk2_A 48 IKAVRSFVAQGVDAIFIAPVVATGWEP---VLKEAKDAE--IPVFLL 89 (306)
T ss_dssp HHHHHHHHHHTCSEEEECCSSSSSCHH---HHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhHHH---HHHHHHHCC--CCEEEe
Confidence 456788888999999999876542 22 223333445 567755
No 41
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=52.97 E-value=75 Score=29.37 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=81.5
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (441)
+.+||++...-..|-...+++++.+.+.+ ++ .++.- ..+........
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~~~~ 48 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAES-LG-AKVFV-------------------------------QSANGNEETQM 48 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHH-TS-CEEEE-------------------------------EECTTCHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------ECCCCCHHHHH
Confidence 35899999877788888999998887753 32 23221 11111112234
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCC--CCCChhh--HHHHHHHHHHHH
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID--KSFGFDT--AVEEAQRAINAA 246 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td--~s~GfdT--A~~~~~~~i~~i 246 (441)
+.++.|...++|++++.+-+.+.. ....+.+.+.+ +|||.+ |++++..+ .++++|- +...+++. +
T Consensus 49 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~a~~~---L 117 (313)
T 3m9w_A 49 SQIENMINRGVDVLVIIPYNGQVL--SNVVKEAKQEG--IKVLAY----DRMINDADIDFYISFDNEKVGELQAKA---L 117 (313)
T ss_dssp HHHHHHHHTTCSEEEEECSSTTSC--HHHHHHHHTTT--CEEEEE----SSCCTTSCCSEEEEECHHHHHHHHHHH---H
T ss_pred HHHHHHHHcCCCEEEEeCCChhhh--HHHHHHHHHCC--CeEEEE----CCcCCCCCceEEEecCHHHHHHHHHHH---H
Confidence 678888899999999999876531 11223333334 677755 55554433 3666663 23333332 2
Q ss_pred HHhhhcCCceEEEEEe-cC------CCccHHHHHHhhccCCCCEEEcC
Q 013518 247 HVEAESIENGIGVVKL-MG------RYCGFIAMYATLGSRDVDCCLIP 287 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEv-MG------r~~G~LA~~~aLA~~~ad~iliP 287 (441)
.. ... +++|.++-- .+ |..||..+...... ..++.+++
T Consensus 118 ~~-~~G-~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~ 162 (313)
T 3m9w_A 118 VD-IVP-QGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVD-SGKIKVVG 162 (313)
T ss_dssp HH-HCS-SEEEEEEESCTTCHHHHHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred HH-hCC-CCcEEEEECCCCCccHHHHHHHHHHHHHhhcc-CCCEEEEe
Confidence 21 134 356777642 22 44566654443311 23454444
No 42
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=52.46 E-value=1.4e+02 Score=27.46 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=60.4
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (441)
..+|||+...-.-|=...+++++-+.+.+ ++ .++.-+ .+........
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~~ 49 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQE-AG-YKTDLQ-------------------------------YADDDIPNQL 49 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHH-TT-CEEEEE-------------------------------ECTTCHHHHH
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHH-cC-CEEEEe-------------------------------eCCCCHHHHH
Confidence 45899999877788888888888877753 32 222211 0111112234
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCC---CCCCCChh
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPV---IDKSFGFD 233 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~---td~s~Gfd 233 (441)
+.++.|...++|++++.+-+.... ....+.+.+.+ +|||.+ |++++. .+.++++|
T Consensus 50 ~~i~~~~~~~vdgiIi~~~~~~~~--~~~~~~~~~~g--iPvV~~----~~~~~~~~~~~~~V~~D 107 (330)
T 3uug_A 50 SQIENMVTKGVKVLVIASIDGTTL--SDVLKQAGEQG--IKVIAY----DRLIRNSGDVSYYATFD 107 (330)
T ss_dssp HHHHHHHHHTCSEEEECCSSGGGG--HHHHHHHHHTT--CEEEEE----SSCCCSCTTCCEEEEEC
T ss_pred HHHHHHHHcCCCEEEEEcCCchhH--HHHHHHHHHCC--CCEEEE----CCCCCCCCceeEEEEeC
Confidence 677888889999999998775321 12223344445 667755 454433 23456654
No 43
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=52.18 E-value=15 Score=37.02 Aligned_cols=46 Identities=13% Similarity=0.246 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeecc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (441)
..+++++.+++.+.|.+|-|||--+++.|..++-. + .+++|.||-|
T Consensus 94 ~v~~~~~~~~~~~~d~IIavGGGs~~D~AK~iA~~---~--~~p~i~IPTT 139 (387)
T 3uhj_A 94 EIERVRKVAIEHGSDILVGVGGGKTADTAKIVAID---T--GARIVIAPTI 139 (387)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH---T--TCEEEECCSS
T ss_pred HHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHh---c--CCCEEEecCc
Confidence 46788999999999999999998888888877632 2 4789999999
No 44
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=51.67 E-value=19 Score=36.07 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHc-------------CCCceEEEeeccccCCC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTIDNDI 223 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTIDNDi 223 (441)
..+++++.+++.+.|.+|-|||--+++.|..++-..... .-.+++|.||-|--.|-
T Consensus 76 ~v~~~~~~~~~~~~D~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgS 144 (383)
T 3ox4_A 76 AVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTAS 144 (383)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCT
T ss_pred HHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchh
Confidence 467889999999999999999988888888776544210 11478999999986543
No 45
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=51.09 E-value=26 Score=32.24 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=49.7
Q ss_pred cEEEEEccccccccc---------CCeeeCChhhhhccccccccccccccC--CCCHHHHHHHHHHhCCCEEEEEcCCCc
Q 013518 124 SKILGIDGGYRGFYS---------KNTINLTPKVVNDIHKRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGT 192 (441)
Q Consensus 124 ~~v~Gi~~G~~GL~~---------~~~~~L~~~~v~~~~~~GGs~LGssR~--~~~~~~i~~~l~~~~Id~LvvIGGdgs 192 (441)
.-++|+-.|..=|++ ||+-.++.+..+.+...| .++-.... .-|++++++.+.+++.+-++++|+.|.
T Consensus 23 ~~~i~~DgGa~~l~~~g~~Pd~ivGD~DSi~~~~~~~~~~~~-~i~~~p~eKD~TD~e~Al~~a~~~~~~~I~i~Ga~Gg 101 (212)
T 3l8m_A 23 EHWIGIDRGTLILLESGITPQFAVGDFDSISDSERNFIQQQI-EINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGATGG 101 (212)
T ss_dssp SEEEEETHHHHHHHHTTCCCSEEESCCCCSCHHHHHHHHHHT-BCCCCC---CBCHHHHHHHHHHHTTCCEEEEESCSSS
T ss_pred CEEEEECHHHHHHHHCCCCccEEEeCcccCCHHHHHHHhcCC-cEEEECCcCCCCHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 578888888776654 456666666666666665 55544332 247899999999999999999999997
No 46
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=50.98 E-value=16 Score=36.39 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (441)
..+++++.+++.+.|.+|-|||--+++.|..++-. ++ +++|.||-|- .+
T Consensus 76 ~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~P~i~IPTTa-tg 124 (364)
T 3iv7_A 76 VAERARAVATDNEIDLLVCVGGGSTIGLAKAIAMT---TA--LPIVAIPTTY-AG 124 (364)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS-SC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEcCCc-cc
Confidence 46788999999999999999998888888877652 34 6799999987 53
No 47
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=50.87 E-value=12 Score=37.58 Aligned_cols=53 Identities=9% Similarity=0.172 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcC----------------CCceEEEeecccc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG----------------LKVAVAGIPKTID 220 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~----------------~~i~vvgIPkTID 220 (441)
...++++.+++.+.|.+|-|||==.++.|..++-.....+ -.+++|.||-|--
T Consensus 94 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTag 162 (408)
T 1oj7_A 94 TLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPA 162 (408)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCS
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCc
Confidence 4678899999999999999999888888877765321101 3478999999864
No 48
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=49.22 E-value=18 Score=35.96 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
..+++++.+++.+.|.+|-|||--+++.|..++-. ++ +++|.||-|-
T Consensus 77 ~v~~~~~~~~~~~~D~IIavGGGsviD~aK~iA~~---~~--~p~i~IPTT~ 123 (358)
T 3jzd_A 77 SARDATARAREAGADCAVAVGGGSTTGLGKAIALE---TG--MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---HC--CCEEEEECSS
T ss_pred HHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEeCCc
Confidence 46788899999999999999998888888877652 34 6799999985
No 49
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=49.04 E-value=19 Score=35.60 Aligned_cols=47 Identities=26% Similarity=0.254 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
..+++++.+++.+.|.+|-|||--+++.|..++-. ++ +++|.||-|-
T Consensus 75 ~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~iA~~---~~--~p~i~IPTTa 121 (353)
T 3hl0_A 75 VTKTAVEAYRAAGADCVVSLGGGSTTGLGKAIALR---TD--AAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH---HC--CEEEEEECSS
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhc---cC--CCEEEEeCCc
Confidence 46788899999999999999998888888877652 24 6899999997
No 50
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=48.04 E-value=1.6e+02 Score=26.60 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=54.1
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCH
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~ 169 (441)
+..+||++...-..|=...++.++.+.+.+ ++ .++.-+. +.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 53 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKA-NK-YEALVAT-------------------------------SQNSRISE 53 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CSSCHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHH-cC-CEEEEEC-------------------------------CCCCHHHH
Confidence 346999999877777788888888877753 33 2332110 11111223
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
.+.++.|...++|++++.+.+.... ..+.+.+.+.+ +|||.+
T Consensus 54 ~~~~~~l~~~~vdgiI~~~~~~~~~--~~~~~~~~~~~--iPvV~~ 95 (293)
T 3l6u_A 54 REQILEFVHLKVDAIFITTLDDVYI--GSAIEEAKKAG--IPVFAI 95 (293)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTTT--HHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHcCCCEEEEecCChHHH--HHHHHHHHHcC--CCEEEe
Confidence 4677888889999999998876542 12223444445 567765
No 51
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=47.40 E-value=23 Score=35.16 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcC---------------CCceEEEeeccccC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG---------------LKVAVAGIPKTIDN 221 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~---------------~~i~vvgIPkTIDN 221 (441)
..+++++.++++++|.+|-|||==.++.|..++-.....+ -.+++|.||-|--.
T Consensus 76 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gt 144 (386)
T 1rrm_A 76 VVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGT 144 (386)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSC
T ss_pred HHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCc
Confidence 4678999999999999999999888888877765442111 14789999998844
No 52
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=46.42 E-value=1.2e+02 Score=27.55 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=53.9
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (441)
+.+||++...-.-|=...+++++-+.+.+ ++ .+++ ++.+ .......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~-------------------------------~~~~-~~~~~~~ 47 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKD-LG-FEVI-------------------------------KIAV-PDGEKTL 47 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-EEEE-------------------------------EEEC-CSHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHH-cC-CEEE-------------------------------EeCC-CCHHHHH
Confidence 46999999877777778888888777753 22 2221 0111 1112245
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
+.++.|...++|++++.+-+.... ..+.+.+.+.+ +|||.+
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~ 88 (306)
T 8abp_A 48 NAIDSLAASGAKGFVICTPDPKLG--SAIVAKARGYD--MKVIAV 88 (306)
T ss_dssp HHHHHHHHTTCCEEEEECSCGGGH--HHHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCchhh--HHHHHHHHHCC--CcEEEe
Confidence 677888889999999998776532 22233444445 567754
No 53
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=46.42 E-value=1.6e+02 Score=26.37 Aligned_cols=126 Identities=13% Similarity=0.063 Sum_probs=71.4
Q ss_pred CCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCC
Q 013518 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168 (441)
Q Consensus 89 ~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~ 168 (441)
.+..+||++...-.-|-...++.++.+.+.+ ++ .++.-+. +......
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~~-------------------------------~~~~~~~ 51 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES-RG-YIGVLFD-------------------------------ANADIER 51 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT-TT-CEEEEEE-------------------------------CTTCHHH
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHH
Confidence 3456899999777777778888888777743 22 2332110 0011122
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC-CCCCChh--hHHHHHHHHHHH
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFD--TAVEEAQRAINA 245 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t-d~s~Gfd--TA~~~~~~~i~~ 245 (441)
..+.++.|...++|++++.+.+. . ...+.+.+.+ +|+|.+ |++++.. -.++++| .+...+++.+
T Consensus 52 ~~~~~~~l~~~~vdgiIi~~~~~--~---~~~~~l~~~~--iPvV~i----~~~~~~~~~~~V~~D~~~~g~~a~~~L-- 118 (276)
T 3jy6_A 52 EKTLLRAIGSRGFDGLILQSFSN--P---QTVQEILHQQ--MPVVSV----DREMDACPWPQVVTDNFEAAKAATTAF-- 118 (276)
T ss_dssp HHHHHHHHHTTTCSEEEEESSCC--H---HHHHHHHTTS--SCEEEE----SCCCTTCSSCEEECCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCEEEEecCCc--H---HHHHHHHHCC--CCEEEE----ecccCCCCCCEEEEChHHHHHHHHHHH--
Confidence 35678888999999999999887 2 2334444444 567755 4444332 2344544 3333333333
Q ss_pred HHHhhhcCCceEEEEEecC
Q 013518 246 AHVEAESIENGIGVVKLMG 264 (441)
Q Consensus 246 i~~~a~s~~~rv~iVEvMG 264 (441)
.. .. ++++.++--..
T Consensus 119 -~~--~G-~~~I~~i~~~~ 133 (276)
T 3jy6_A 119 -RQ--QG-YQHVVVLTSEL 133 (276)
T ss_dssp -HT--TT-CCEEEEEEECS
T ss_pred -HH--cC-CCeEEEEecCC
Confidence 22 24 45677775544
No 54
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=46.03 E-value=1.6e+02 Score=26.20 Aligned_cols=121 Identities=13% Similarity=0.158 Sum_probs=65.6
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-CCHH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTS 170 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~~ 170 (441)
.+||++...-..|-...++.++-+.+.+ ++ .++. +..+... ....
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~~~ 49 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNK-AG-YQLL--------------------------------LGYSDYSIEQEE 49 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHH-TS-CEEC--------------------------------CEECTTCHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEcCCCCHHHHH
Confidence 4899998766667777778887776643 22 1211 1011111 1234
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC-CCCCChhh--HHHHHHHHHHHHH
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDT--AVEEAQRAINAAH 247 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t-d~s~GfdT--A~~~~~~~i~~i~ 247 (441)
+.++.|...++|++++.+.+.+-. +.+.+.+.+ +|+|.+ |.+.+.. -.++++|- +...+++ .+.
T Consensus 50 ~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~d~~~~~~~a~~---~L~ 116 (275)
T 3d8u_A 50 KLLSTFLESRPAGVVLFGSEHSQR----THQLLEASN--TPVLEI----AELSSKASYLNIGVDHFEVGKACTR---HLI 116 (275)
T ss_dssp HHHHHHHTSCCCCEEEESSCCCHH----HHHHHHHHT--CCEEEE----SSSCSSSSSEEECBCHHHHHHHHHH---HHH
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHH----HHHHHHhCC--CCEEEE----eeccCCCCCCEEEEChHHHHHHHHH---HHH
Confidence 567888889999999998775532 223333445 557765 3333221 13556553 3333333 333
Q ss_pred HhhhcCCceEEEEEe
Q 013518 248 VEAESIENGIGVVKL 262 (441)
Q Consensus 248 ~~a~s~~~rv~iVEv 262 (441)
. .. +++|.++--
T Consensus 117 ~--~G-~~~i~~i~~ 128 (275)
T 3d8u_A 117 E--QG-FKNVGFIGA 128 (275)
T ss_dssp T--TT-CCCEEEEEC
T ss_pred H--CC-CCeEEEEcC
Confidence 2 24 356777753
No 55
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=45.94 E-value=1.7e+02 Score=26.45 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=61.5
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (441)
..+||++...-..|-...++.++.+.+.+ ++ .++.-+. -+........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~------------------------------~~~~~~~~~~ 55 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHK-NG-YNLIIVY------------------------------SGSADPEEQK 55 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHT-TT-CEEEEEC----------------------------------------
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEEEEe------------------------------CCCCCHHHHH
Confidence 45899999877777778888888777643 22 2222110 0000011223
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhh--HHHHHHHHHHHHHH
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDT--AVEEAQRAINAAHV 248 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdT--A~~~~~~~i~~i~~ 248 (441)
+.++.|...++|++++.+.+.+- ...+.+.+. .+|+|.+-...+++ -.++++|- +...+++.+ ..
T Consensus 56 ~~~~~l~~~~vdgiI~~~~~~~~----~~~~~l~~~--~iPvV~~~~~~~~~----~~~V~~D~~~~g~~a~~~L---~~ 122 (290)
T 3clk_A 56 HALLTAIERPVMGILLLSIALTD----DNLQLLQSS--DVPYCFLSMGFDDD----RPFISSDDEDIGYQATNLL---IN 122 (290)
T ss_dssp CHHHHHHSSCCSEEEEESCC--------CHHHHHCC----CEEEESCC--CC----SCEEECCHHHHHHHHHHHH---HT
T ss_pred HHHHHHHhcCCCEEEEecccCCH----HHHHHHHhC--CCCEEEEcCCCCCC----CCEEEeChHHHHHHHHHHH---HH
Confidence 46677788899999999876542 122333333 46677664443332 22455443 333333333 22
Q ss_pred hhhcCCceEEEEE
Q 013518 249 EAESIENGIGVVK 261 (441)
Q Consensus 249 ~a~s~~~rv~iVE 261 (441)
.. +++|.++-
T Consensus 123 --~G-~~~i~~i~ 132 (290)
T 3clk_A 123 --EG-HRQIGIAG 132 (290)
T ss_dssp --TT-CCSEEEES
T ss_pred --cC-CCEEEEEe
Confidence 24 35677764
No 56
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=45.83 E-value=1.8e+02 Score=26.64 Aligned_cols=121 Identities=9% Similarity=0.078 Sum_probs=68.0
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC-CCCH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~ 169 (441)
..+||++...-.-|=...++.++-+.+.+ ++ .++.- ..+.. ....
T Consensus 15 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 60 (303)
T 3kke_A 15 SGTIGLIVPDVNNAVFADMFSGVQMAASG-HS-TDVLL--------------------------------GQIDAPPRGT 60 (303)
T ss_dssp --CEEEEESCTTSTTHHHHHHHHHHHHHH-TT-CCEEE--------------------------------EECCSTTHHH
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCChHHH
Confidence 35899999877778888888888877753 22 22221 11111 1234
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChh--hHHHHHHHHHHHHH
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFD--TAVEEAQRAINAAH 247 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~Gfd--TA~~~~~~~i~~i~ 247 (441)
.+.++.|...++|++++.+.+.+... ..+.+.+ .+|||.+ |++++..-.++++| .+...+++.+ .
T Consensus 61 ~~~~~~l~~~~vdgiI~~~~~~~~~~---~~~~l~~---~iPvV~i----~~~~~~~~~~V~~D~~~~g~~a~~~L---~ 127 (303)
T 3kke_A 61 QQLSRLVSEGRVDGVLLQRREDFDDD---MLAAVLE---GVPAVTI----NSRVPGRVGSVILDDQKGGGIATEHL---I 127 (303)
T ss_dssp HHHHHHHHSCSSSEEEECCCTTCCHH---HHHHHHT---TSCEEEE----SCCCTTCCCEEEECHHHHHHHHHHHH---H
T ss_pred HHHHHHHHhCCCcEEEEecCCCCcHH---HHHHHhC---CCCEEEE----CCcCCCCCCEEEECcHHHHHHHHHHH---H
Confidence 56788899999999999998776430 2233433 4667765 44443212244444 2333333332 2
Q ss_pred HhhhcCCceEEEEE
Q 013518 248 VEAESIENGIGVVK 261 (441)
Q Consensus 248 ~~a~s~~~rv~iVE 261 (441)
. ..+ ++|.++-
T Consensus 128 ~--~G~-~~I~~i~ 138 (303)
T 3kke_A 128 T--LGH-SRIAFIS 138 (303)
T ss_dssp H--TTC-CSEEEEE
T ss_pred H--CCC-CeEEEEe
Confidence 2 344 5677764
No 57
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=43.89 E-value=73 Score=30.48 Aligned_cols=103 Identities=12% Similarity=0.082 Sum_probs=59.0
Q ss_pred chhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCe-eeCChhhhhccccccccccccccC---CCCHHHHHHHHHHhC
Q 013518 105 GLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT-INLTPKVVNDIHKRGGTILGTSRG---GHDTSKIVDSIQDRG 180 (441)
Q Consensus 105 GmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~v~~~~~~GGs~LGssR~---~~~~~~i~~~l~~~~ 180 (441)
--+...+.+++++.+.++..+|.-+..- ..+ ........+.+...|+.+...... ..++...++.+++.+
T Consensus 125 ~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~ 198 (392)
T 3lkb_A 125 SYSEQVVALLEYIAREKKGAKVALVVHP------SPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAG 198 (392)
T ss_dssp CHHHHHHHHHHHHHHHCTTCEEEEEECS------SHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEEEeC------CchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcC
Confidence 3345566667776543454555544321 111 011111122334456665544332 357788889999999
Q ss_pred CCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEee
Q 013518 181 INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (441)
Q Consensus 181 Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (441)
.|++|+.+.+ ..+..+.+.+++.|+++++++..
T Consensus 199 ~dav~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~ 231 (392)
T 3lkb_A 199 VEYVVHQNVA---GPVANILKDAKRLGLKMRHLGAH 231 (392)
T ss_dssp CCEEEEESCH---HHHHHHHHHHHHTTCCCEEEECG
T ss_pred CCEEEEecCc---chHHHHHHHHHHcCCCceEEEec
Confidence 9998876633 23455667777889998887653
No 58
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=43.86 E-value=14 Score=36.69 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH-------------cCCCceEEEeeccccCCC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-------------RGLKVAVAGIPKTIDNDI 223 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~-------------~~~~i~vvgIPkTIDNDi 223 (441)
..+++++.+++.+.|.++-|||--.++.|..++-.... ..-.+++|.||-|-..+-
T Consensus 86 ~v~~~~~~~~~~~~d~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgs 154 (371)
T 1o2d_A 86 NVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGS 154 (371)
T ss_dssp HHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCG
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchhh
Confidence 46788888999999999999998888888877654321 003478999999876543
No 59
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=43.32 E-value=25 Score=35.19 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHhC---CCEEEEEcCCCchHHHHHHHHHHHHc-------------CCCceEEEeeccccCC
Q 013518 168 DTSKIVDSIQDRG---INQVYIIGGDGTQKGAAVIYEEIRQR-------------GLKVAVAGIPKTIDND 222 (441)
Q Consensus 168 ~~~~i~~~l~~~~---Id~LvvIGGdgs~~~a~~L~~~~~~~-------------~~~i~vvgIPkTIDND 222 (441)
..+++++.+++.+ .|.+|-|||--++..|..++-..... +-.+++|.||-|--.|
T Consensus 94 ~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagtg 164 (375)
T 3rf7_A 94 QVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSGTG 164 (375)
T ss_dssp HHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCSSC
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCccc
Confidence 4678899999998 99999999988888888776543100 1147899999886443
No 60
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=42.70 E-value=27 Score=34.67 Aligned_cols=54 Identities=7% Similarity=0.080 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH------c-------CCCceEEEeeccccC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ------R-------GLKVAVAGIPKTIDN 221 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~------~-------~~~i~vvgIPkTIDN 221 (441)
..+++++.++++++|.+|-|||--.++.|..++-.... + .-.+++|.||-|--.
T Consensus 80 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gt 146 (387)
T 3bfj_A 80 NVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGT 146 (387)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCc
Confidence 46789999999999999999998888888877653211 1 024789999998743
No 61
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=41.82 E-value=7.5 Score=39.46 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHhCC---CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
..+++++.++++++ |.++-+||--.+..|..++-. +.-.+++|.||-|.
T Consensus 108 ~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~---~~rgip~I~IPTTl 159 (390)
T 3okf_A 108 TFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAAC---YQRGVDFIQIPTTL 159 (390)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred HHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHH---hcCCCCEEEeCCCC
Confidence 46789999999999 699999998878777665422 22247899999997
No 62
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=39.90 E-value=2.1e+02 Score=25.67 Aligned_cols=87 Identities=7% Similarity=0.006 Sum_probs=49.6
Q ss_pred CCeeEEEEccC--CCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC-C
Q 013518 90 DEVHACIVTCG--GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-G 166 (441)
Q Consensus 90 ~~~~iaIl~sG--G~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~ 166 (441)
+..+||++... -..|-...++.++.+.+.+ .+ .++.-+ .+.. .
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~--------------------------------~~~~~~ 63 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-RQLLLA--------------------------------DGKHSA 63 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------CCTTSH
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHH-CC-CEEEEE--------------------------------eCCCCH
Confidence 34589999865 5667777788888777643 22 222100 0011 1
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHH-cCCCceEEEee
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-RGLKVAVAGIP 216 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~-~~~~i~vvgIP 216 (441)
....+.++.|...++|++++.+.+.+-. ..+.+.+ .+ +|+|.+-
T Consensus 64 ~~~~~~~~~l~~~~vdgii~~~~~~~~~----~~~~l~~~~~--iPvV~~~ 108 (296)
T 3brq_A 64 EEERQAIQYLLDLRCDAIMIYPRFLSVD----EIDDIIDAHS--QPIMVLN 108 (296)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSSSCHH----HHHHHHHTCS--SCEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCChH----HHHHHHhcCC--CCEEEEc
Confidence 1234567788889999999998765432 1233444 44 5677653
No 63
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=38.83 E-value=2.2e+02 Score=25.72 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=66.4
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC-CCCH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~ 169 (441)
..+||++...-..|=...++.++.+.+.+ ++ .++.- ..+.. ....
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~~~~~~ 53 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRA-VH-RHVVV--------------------------------ATGCGESTPR 53 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------ECCCSSSCHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCCchhhh
Confidence 45899998765666667777887776643 22 22210 01111 1223
Q ss_pred HH---HHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC-CCCCChhh--HHHHHHHHH
Q 013518 170 SK---IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDT--AVEEAQRAI 243 (441)
Q Consensus 170 ~~---i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t-d~s~GfdT--A~~~~~~~i 243 (441)
.+ .++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+- .+.+.. -.++++|- +...+++.+
T Consensus 54 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~~----~~~~~~~~~~V~~D~~~~g~~a~~~L 123 (290)
T 2rgy_A 54 EQALEAVRFLIGRDCDGVVVISHDLHDE----DLDELHRMH--PKMVFLN----RAFDALPDASFCPDHRRGGELAAATL 123 (290)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSCHH----HHHHHHHHC--SSEEEES----SCCTTSGGGEECCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCccEEEEecCCCCHH----HHHHHhhcC--CCEEEEc----cccCCCCCCEEEeCcHHHHHHHHHHH
Confidence 45 78888899999999998876522 223333345 5577653 333321 13455553 333333333
Q ss_pred HHHHHhhhcCCceEEEEEe
Q 013518 244 NAAHVEAESIENGIGVVKL 262 (441)
Q Consensus 244 ~~i~~~a~s~~~rv~iVEv 262 (441)
.. .. +++|.++--
T Consensus 124 ---~~--~G-~~~I~~i~~ 136 (290)
T 2rgy_A 124 ---IE--HG-HRKLAVISG 136 (290)
T ss_dssp ---HH--TT-CCSEEEEES
T ss_pred ---HH--CC-CceEEEEeC
Confidence 22 24 456877753
No 64
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=37.76 E-value=2.2e+02 Score=25.42 Aligned_cols=137 Identities=14% Similarity=0.055 Sum_probs=70.9
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-CCHH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTS 170 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~~ 170 (441)
.+||++...-..|-...+++++-+.+.+ ++ .+++-. ++... ....
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~-~g-~~~~~~--------------------------------~~~~~~~~~~ 47 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADK-LG-YNLVVL--------------------------------DSQNNPAKEL 47 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-HT-CEEEEE--------------------------------ECTTCHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHH-cC-cEEEEe--------------------------------CCCCCHHHHH
Confidence 4789988766667777788888776653 22 222210 11111 1123
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCC--CCCChhh--HHHHHHHHHHHH
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID--KSFGFDT--AVEEAQRAINAA 246 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td--~s~GfdT--A~~~~~~~i~~i 246 (441)
+.++.|...++|++++.+.+.... ..+.+.+.+.+ +|+|.+ |++.+..+ .+++.|- +...+++ .+
T Consensus 48 ~~i~~l~~~~vdgiIi~~~~~~~~--~~~~~~~~~~~--iPvV~i----~~~~~~~~~~~~V~~D~~~~g~~a~~---~L 116 (271)
T 2dri_A 48 ANVQDLTVRGTKILLINPTDSDAV--GNAVKMANQAN--IPVITL----DRQATKGEVVSHIASDNVLGGKIAGD---YI 116 (271)
T ss_dssp HHHHHHTTTTEEEEEECCSSTTTT--HHHHHHHHHTT--CCEEEE----SSCCSSSCCSEEEEECHHHHHHHHHH---HH
T ss_pred HHHHHHHHcCCCEEEEeCCChHHH--HHHHHHHHHCC--CcEEEe----cCCCCCCceeEEEecChHHHHHHHHH---HH
Confidence 556778888999999987654321 11223344445 557754 55544322 2566553 2333333 33
Q ss_pred HHhhhcCCceEEEEEec-------CCCccHHHHHH
Q 013518 247 HVEAESIENGIGVVKLM-------GRYCGFIAMYA 274 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEvM-------Gr~~G~LA~~~ 274 (441)
...... ++++.++--. -|..||..+..
T Consensus 117 ~~~g~g-~~~I~~i~g~~~~~~~~~R~~Gf~~al~ 150 (271)
T 2dri_A 117 AKKAGE-GAKVIELQGIAGTSAARERGEGFQQAVA 150 (271)
T ss_dssp HHHHCT-TCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCC-CCeEEEEECCCCCccHhHHHHHHHHHHh
Confidence 222222 3577777522 24456665443
No 65
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=37.55 E-value=2.3e+02 Score=25.42 Aligned_cols=123 Identities=7% Similarity=0.052 Sum_probs=65.2
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (441)
..+||++...-..|-...+++++-+.+.+ ++ .++.-+ -+........
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~ 53 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KG-YTLILG-------------------------------NAWNNLEKQR 53 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHH-HT-CEEEEE-------------------------------ECTTCHHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CeEEEE-------------------------------cCCCChHHHH
Confidence 45899999766677777788887776643 22 122100 0000011234
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCC--CCCChh--hHHHHHHHHHHHH
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID--KSFGFD--TAVEEAQRAINAA 246 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td--~s~Gfd--TA~~~~~~~i~~i 246 (441)
+.++.|...++|++++.+.+.+-.. .+.+.+. ..+|+|.+- ++.+..+ .++++| .+...+++.+
T Consensus 54 ~~~~~l~~~~vdgii~~~~~~~~~~----~~~l~~~-~~iPvV~~~----~~~~~~~~~~~V~~d~~~~~~~~~~~L--- 121 (289)
T 1dbq_A 54 AYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEEY-RHIPMVVMD----WGEAKADFTDAVIDNAFEGGYMAGRYL--- 121 (289)
T ss_dssp HHHHHHHHTTCSEEEEECSCCCHHH----HHHHHHT-TTSCEEEEE----CSSCCSSSCEEEEECHHHHHHHHHHHH---
T ss_pred HHHHHHHhCCCCEEEEEeccCCHHH----HHHHHhc-cCCCEEEEc----cCCCccCcCCEEEeCcHHHHHHHHHHH---
Confidence 5678888899999999988765322 2223221 235677653 3333222 255555 3334444433
Q ss_pred HHhhhcCCceEEEEE
Q 013518 247 HVEAESIENGIGVVK 261 (441)
Q Consensus 247 ~~~a~s~~~rv~iVE 261 (441)
.. .. +++|.++-
T Consensus 122 ~~--~G-~~~i~~i~ 133 (289)
T 1dbq_A 122 IE--RG-HREIGVIP 133 (289)
T ss_dssp HH--TT-CCSEEEEC
T ss_pred HH--CC-CCeEEEEe
Confidence 22 24 35677763
No 66
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=37.25 E-value=2.2e+02 Score=25.31 Aligned_cols=121 Identities=8% Similarity=-0.016 Sum_probs=60.7
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTS 170 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~ 170 (441)
..+||++...-.-|=...++.++.+.+.+ ++ .++.-+ .+........
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~-------------------------------~~~~~~~~~~ 54 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALA-HG-YQVLIG-------------------------------NSDNDIKKAQ 54 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CCEEEE-------------------------------ECTTCHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCCCCHHHHH
Confidence 45899999776677777788888777653 33 222210 0111112245
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHH-HHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHHHHh
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYE-EIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 249 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~-~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i~~~ 249 (441)
+.++.|...++|++++.+.+ . ...+ .+.+.+ +|+|. +|++.+..+ ++++|-.- ....+.+.+..
T Consensus 55 ~~~~~l~~~~~dgiIi~~~~---~---~~~~~~l~~~~--iPvV~----~~~~~~~~~-~V~~D~~~-~g~~a~~~L~~- 119 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTAFN---E---NIIENTLTDHH--IPFVF----IDRINNEHN-GISTNHFK-GGQLQAEVVRK- 119 (277)
T ss_dssp HHHHHHHHTTCSEEEECGGG---H---HHHHHHHHHC---CCEEE----GGGCC----------HHH-HHHHHHHHHHH-
T ss_pred HHHHHHHhCCCCEEEEecCC---h---HHHHHHHHcCC--CCEEE----EeccCCCCC-eEEechHH-HHHHHHHHHHH-
Confidence 67888899999999998822 1 1233 444455 55774 455555444 77766421 12223333332
Q ss_pred hhcCCceEEEEE
Q 013518 250 AESIENGIGVVK 261 (441)
Q Consensus 250 a~s~~~rv~iVE 261 (441)
..+ +++.++-
T Consensus 120 -~G~-~~i~~i~ 129 (277)
T 3e61_A 120 -GKG-KNVLIVH 129 (277)
T ss_dssp -TTC-CSEEEEE
T ss_pred -CCC-CeEEEEe
Confidence 243 5677765
No 67
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=36.36 E-value=1.1e+02 Score=27.77 Aligned_cols=70 Identities=10% Similarity=0.010 Sum_probs=45.1
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhcccccccccccccc--CCC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSR--GGH 167 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR--~~~ 167 (441)
+..+||++...-..|-...++.++.+.+.+ ++ .++.-+ .+.. ...
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~-~g-~~~~~~-------------------------------~~~~~~~~~ 50 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEK-QG-VNLRVL-------------------------------EAGGYPNKS 50 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHH-HT-CEEEEE-------------------------------ECSSTTCHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CeEEEE-------------------------------cCCCCCCHH
Confidence 346899999877777788888888777753 33 222211 0111 111
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCc
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGT 192 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs 192 (441)
...+.++.|...++|++++.+.+..
T Consensus 51 ~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 51 RQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp HHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCChh
Confidence 2446778888899999999987655
No 68
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=36.04 E-value=29 Score=34.86 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHH---------H----cCCCceEEEeeccccC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIR---------Q----RGLKVAVAGIPKTIDN 221 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~---------~----~~~~i~vvgIPkTIDN 221 (441)
..+++++.+++.++|.+|-|||=-.+..|..++-... . ..-.+++|.||-|--.
T Consensus 89 ~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagt 155 (407)
T 1vlj_A 89 KVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISAT 155 (407)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSS
T ss_pred HHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCc
Confidence 4678899999999999999999888888887765321 0 0125789999998543
No 69
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=36.03 E-value=60 Score=31.58 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCc------hHHHHHHHHHHHHc-CCCceEEEee
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGT------QKGAAVIYEEIRQR-GLKVAVAGIP 216 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs------~~~a~~L~~~~~~~-~~~i~vvgIP 216 (441)
..++..+..++..||+.++++.||-. +..|..|.+.+++. +++|.+.+-|
T Consensus 97 ~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~IgvA~yP 153 (304)
T 3fst_A 97 DELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYP 153 (304)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHCCCEEEEEECT
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Confidence 45777888889999999999999843 44477787777654 5666666666
No 70
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=35.60 E-value=12 Score=37.35 Aligned_cols=63 Identities=22% Similarity=0.346 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHhCC---CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHH
Q 013518 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 236 (441)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~ 236 (441)
...++.+.++++++ |.++-+||=-.++.|..++--. .+| +++|.||-|. +.+||-+.|--|++
T Consensus 79 ~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl---la~tdS~v~~kt~I 144 (368)
T 2gru_A 79 TVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMM-FRG--IALIHVPTTF---LAASDSVLSIKQAV 144 (368)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHB-TTC--CEEEEEECSH---HHHHTTTSSCEEEE
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHh-cCC--CCEEEECCch---HhhcCCCcCCeEEE
Confidence 35778889999995 9999999977777766555321 234 7899999996 44555555544443
No 71
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=34.56 E-value=2.5e+02 Score=26.42 Aligned_cols=87 Identities=10% Similarity=0.201 Sum_probs=48.4
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-CCH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDT 169 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~ 169 (441)
..+||++...-..|-...++.++-+.+.+ .+ .++. +..+... ...
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 111 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASK-AG-LATI--------------------------------ITNSNEDATTM 111 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHH-TT-CCEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 35899998655566666777777766643 22 1211 0001111 123
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeec
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (441)
.+.++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+=.
T Consensus 112 ~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~~~~--iPvV~i~~ 153 (348)
T 3bil_A 112 SGSLEFLTSHGVDGIICVPNEECAN----QLEDLQKQG--MPVVLVDR 153 (348)
T ss_dssp HHHHHHHHHTTCSCEEECCCGGGHH----HHHHHHHC---CCEEEESS
T ss_pred HHHHHHHHhCCCCEEEEeCCCCChH----HHHHHHhCC--CCEEEEcc
Confidence 4577888889999999998765421 223444445 55776533
No 72
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=34.13 E-value=44 Score=32.77 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHhCC---CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
..+++++.++++++ |.++-|||=-.+..|..++-. +.-.+++|.||-|.
T Consensus 75 ~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~---~~rgip~i~IPTT~ 126 (354)
T 1xah_A 75 QYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAAT---LLRGVHFIQVPTTI 126 (354)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECST
T ss_pred HHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHH---hccCCCEEEECCcc
Confidence 46789999999999 999999998888877766532 12247899999987
No 73
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=33.85 E-value=14 Score=36.50 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHhCC---CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
..+++++.++++++ |.++-+||=-.++.|..++-. +.-.+++|.||-|.
T Consensus 69 ~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~---~~rgip~i~IPTTl 120 (348)
T 1ujn_A 69 VYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAAT---YLRGVAYLAFPTTT 120 (348)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHH---hccCCCEEEecCcH
Confidence 46788899999998 899999998778777666532 12247899999874
No 74
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=33.82 E-value=50 Score=32.36 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHhCC---CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
..+++++.++++++ |.++-+||=-.+..|..++-- +.-.+++|.||-|.
T Consensus 70 ~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~---~~rgip~i~IPTTl 121 (343)
T 3clh_A 70 SLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSI---YFRGIDFINIPTTL 121 (343)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred HHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHH---hccCCCEEEeCCch
Confidence 46889999999999 999999998778777666532 12247899999986
No 75
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=33.30 E-value=2.5e+02 Score=24.74 Aligned_cols=90 Identities=10% Similarity=0.015 Sum_probs=52.8
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCHHH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSK 171 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~~~ 171 (441)
+|||++...-..|-...+++++.+.+.+ ++ .++.-+ . ..+........+
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~---------------~--------------~~~~~~~~~~~~ 49 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADE-AG-VTLLHR---------------S--------------TKDDGDIAGQIQ 49 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHH-HT-CEEEEC---------------C--------------CSSTTCHHHHHH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEEEE---------------C--------------CCCCCCHHHHHH
Confidence 4899999888888888899998887754 22 122100 0 000011112345
Q ss_pred HHHHHHHhC-CCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEee
Q 013518 172 IVDSIQDRG-INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (441)
Q Consensus 172 i~~~l~~~~-Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (441)
.++.|...+ +|++++.+-+.... ....+.+.+.+ +|+|.+-
T Consensus 50 ~i~~l~~~~~vdgii~~~~~~~~~--~~~~~~~~~~~--ipvV~~~ 91 (276)
T 3ksm_A 50 ILSYHLSQAPPDALILAPNSAEDL--TPSVAQYRARN--IPVLVVD 91 (276)
T ss_dssp HHHHHHHHSCCSEEEECCSSTTTT--HHHHHHHHHTT--CCEEEES
T ss_pred HHHHHHHhCCCCEEEEeCCCHHHH--HHHHHHHHHCC--CcEEEEe
Confidence 778888889 99999998653321 11223344445 5677653
No 76
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=31.45 E-value=24 Score=31.40 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHh----CCCEEEEEcCCCc
Q 013518 166 GHDTSKIVDSIQDR----GINQVYIIGGDGT 192 (441)
Q Consensus 166 ~~~~~~i~~~l~~~----~Id~LvvIGGdgs 192 (441)
+.+.+.|.+.|++. +.|.+|+.||-|.
T Consensus 50 ~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~ 80 (178)
T 2pbq_A 50 PDERDLIEKTLIELADEKGCSLILTTGGTGP 80 (178)
T ss_dssp CSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 45666666666553 7899999999764
No 77
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=31.07 E-value=3e+02 Score=24.87 Aligned_cols=124 Identities=13% Similarity=0.134 Sum_probs=66.4
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC-CCC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHD 168 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~ 168 (441)
+..+||++...-..|-...++.++.+.+.+ ++ .++.-+ .+.. ...
T Consensus 15 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~--------------------------------~~~~~~~~ 60 (289)
T 2fep_A 15 KTTTVGVIIPDISSIFYSELARGIEDIATM-YK-YNIILS--------------------------------NSDQNMEK 60 (289)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------ECTTCHHH
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEEEE--------------------------------eCCCCHHH
Confidence 345899999765667677788887776643 22 222100 0111 112
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChh--hHHHHHHHHHHHH
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFD--TAVEEAQRAINAA 246 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~Gfd--TA~~~~~~~i~~i 246 (441)
..+.++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+-..++++ . -.++++| .+...+++.+
T Consensus 61 ~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~~~~~~~~--~-~~~V~~D~~~~g~~a~~~L--- 128 (289)
T 2fep_A 61 ELHLLNTMLGKQVDGIVFMGGNITDE----HVAEFKRSP--VPIVLAASVEEQE--E-TPSVAIDYEQAIYDAVKLL--- 128 (289)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCHH----HHHHHHHSS--SCEEEESCCCTTC--C-SCEEECCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCHH----HHHHHHhcC--CCEEEEccccCCC--C-CCEEEECcHHHHHHHHHHH---
Confidence 34567888889999999998765422 223333445 5677663333221 1 1245544 3334444433
Q ss_pred HHhhhcCCceEEEEEe
Q 013518 247 HVEAESIENGIGVVKL 262 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEv 262 (441)
.. .. +++|.++--
T Consensus 129 ~~--~G-~~~I~~i~~ 141 (289)
T 2fep_A 129 VD--KG-HTDIAFVSG 141 (289)
T ss_dssp HH--TT-CSSEEEEES
T ss_pred HH--CC-CCeEEEEeC
Confidence 22 24 356777753
No 78
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=30.80 E-value=3e+02 Score=24.75 Aligned_cols=101 Identities=8% Similarity=0.079 Sum_probs=59.2
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCH
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~ 169 (441)
+..+||++...-.-|=...++.++.+.+.+ ++ .++.-+. +.......
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 53 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARH-KG-YSVLLAN-------------------------------TAEDIVRE 53 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCCHHHH
Confidence 345899999877777778888888777753 33 2332110 00111223
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCC-CCCChh
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFD 233 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td-~s~Gfd 233 (441)
.+.++.|...++|++++.+.+.... +.+.+.+ ..+++|.+ |++++..+ .++++|
T Consensus 54 ~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~~~~--~~iPvV~~----~~~~~~~~~~~V~~D 108 (291)
T 3egc_A 54 REAVGQFFERRVDGLILAPSEGEHD----YLRTELP--KTFPIVAV----NRELRIPGCGAVLSE 108 (291)
T ss_dssp HHHHHHHHHTTCSEEEECCCSSCCH----HHHHSSC--TTSCEEEE----SSCCCCTTCEEEEEC
T ss_pred HHHHHHHHHCCCCEEEEeCCCCChH----HHHHhhc--cCCCEEEE----ecccCCCCCCEEEEC
Confidence 5678889999999999998876332 2233322 34667744 55554222 244444
No 79
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=30.58 E-value=59 Score=24.39 Aligned_cols=50 Identities=12% Similarity=0.296 Sum_probs=37.5
Q ss_pred cccccCCCCHHHHHHHHHHhCCC---------EEEEEcCCCchHHHHHHHHHHHHcCCC
Q 013518 160 LGTSRGGHDTSKIVDSIQDRGIN---------QVYIIGGDGTQKGAAVIYEEIRQRGLK 209 (441)
Q Consensus 160 LGssR~~~~~~~i~~~l~~~~Id---------~LvvIGGdgs~~~a~~L~~~~~~~~~~ 209 (441)
+|+-+....-++..+.|++.+++ +-|.+|.+.+...|..+.+.+++.|++
T Consensus 14 vGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~ 72 (79)
T 1x60_A 14 IGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCc
Confidence 34444445567788888888877 457788888988899998888877875
No 80
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=30.02 E-value=17 Score=31.63 Aligned_cols=50 Identities=16% Similarity=0.279 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIP 224 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~ 224 (441)
+.+++++.|++.+.+-++||||-.-++.+..+.+ .+.+--+|..++.|..
T Consensus 81 ~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~lvD-------el~lt~ip~~~~G~~~ 130 (162)
T 1vdr_A 81 SVEEAVDIAASLDAETAYVIGGAAIYALFQPHLD-------RMVLSRVPGEYEGDTY 130 (162)
T ss_dssp SHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCS-------EEEEEEEEEECCCSEE
T ss_pred CHHHHHHHHHhCCCCcEEEECCHHHHHHHHHhCC-------EEEEEEEccccccCEE
Confidence 6788899999888889999999877776655433 3667888998877653
No 81
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=29.85 E-value=3.1e+02 Score=24.68 Aligned_cols=123 Identities=11% Similarity=-0.009 Sum_probs=66.0
Q ss_pred CCeeEEEEccCCCC--cchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCC
Q 013518 90 DEVHACIVTCGGLC--PGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH 167 (441)
Q Consensus 90 ~~~~iaIl~sGG~a--pGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~ 167 (441)
+..+|||+...-.- |=...++.++-+.+.+ ++ .++.-+ -+.....
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~~~~~ 53 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLST-TQ-YHLVVT-------------------------------PHIHAKD 53 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT-SS-CEEEEC-------------------------------CBSSGGG
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHH-cC-CEEEEe-------------------------------cCCcchh
Confidence 34589999875443 7777788888776642 22 222110 0001112
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCC-CCCChhh--HHHHHHHHHH
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDT--AVEEAQRAIN 244 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td-~s~GfdT--A~~~~~~~i~ 244 (441)
....+.+.+...++|++++.+.+..-.. .+.+.+.+ +|+|. +|++.+..+ .++++|- +...+++.+
T Consensus 54 ~~~~~~~~l~~~~vdgiIi~~~~~~~~~----~~~l~~~~--iPvV~----i~~~~~~~~~~~V~~D~~~~g~~a~~~L- 122 (288)
T 3gv0_A 54 SMVPIRYILETGSADGVIISKIEPNDPR----VRFMTERN--MPFVT----HGRSDMGIEHAFHDFDNEAYAYEAVERL- 122 (288)
T ss_dssp TTHHHHHHHHHTCCSEEEEESCCTTCHH----HHHHHHTT--CCEEE----ESCCCSSCCCEEEEECHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCccEEEEecCCCCcHH----HHHHhhCC--CCEEE----ECCcCCCCCCcEEEeCcHHHHHHHHHHH-
Confidence 2356677788899999999986654332 23344445 55774 455544322 2455543 333333333
Q ss_pred HHHHhhhcCCceEEEEE
Q 013518 245 AAHVEAESIENGIGVVK 261 (441)
Q Consensus 245 ~i~~~a~s~~~rv~iVE 261 (441)
.. .. +++|.++-
T Consensus 123 --~~--~G-~~~I~~i~ 134 (288)
T 3gv0_A 123 --AQ--CG-RKRIAVIV 134 (288)
T ss_dssp --HH--TT-CCEEEEEC
T ss_pred --HH--CC-CCeEEEEc
Confidence 22 24 45677763
No 82
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=29.72 E-value=3.1e+02 Score=24.65 Aligned_cols=123 Identities=8% Similarity=-0.002 Sum_probs=66.6
Q ss_pred CeeEEEEccC-C---CCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC
Q 013518 91 EVHACIVTCG-G---LCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG 166 (441)
Q Consensus 91 ~~~iaIl~sG-G---~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~ 166 (441)
..+||++... - ..|-...++.++.+.+.+ ++ .++.- .-+....
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~ 50 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGA-VN-YFVLP-------------------------------FPFSEDR 50 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH-TT-CEEEE-------------------------------CCCCSST
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHH-cC-CEEEE-------------------------------EeCCCch
Confidence 3589999865 3 567777888888777753 22 22210 0000111
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC-CCCCChh--hHHHHHHHHH
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFD--TAVEEAQRAI 243 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t-d~s~Gfd--TA~~~~~~~i 243 (441)
....+.++.|...++|++++.+.+.+-. ..+.+.+.+ +|+|.+ |.+.+.. -.++++| .+...+++.+
T Consensus 51 ~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~~L 120 (287)
T 3bbl_A 51 SQIDIYRDLIRSGNVDGFVLSSINYNDP----RVQFLLKQK--FPFVAF----GRSNPDWDFAWVDIDGTAGTRQAVEYL 120 (287)
T ss_dssp TCCHHHHHHHHTTCCSEEEECSCCTTCH----HHHHHHHTT--CCEEEE----SCCSTTCCCCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCEEEEeecCCCcH----HHHHHHhcC--CCEEEE----CCcCCCCCCCEEEeccHHHHHHHHHHH
Confidence 2345678888899999999998765432 223343445 567765 3333221 1245544 3333344433
Q ss_pred HHHHHhhhcCCceEEEEEe
Q 013518 244 NAAHVEAESIENGIGVVKL 262 (441)
Q Consensus 244 ~~i~~~a~s~~~rv~iVEv 262 (441)
-+ ..+ ++|.++--
T Consensus 121 ~~-----~G~-~~I~~i~~ 133 (287)
T 3bbl_A 121 IG-----RGH-RRIAILAW 133 (287)
T ss_dssp HH-----HTC-CCEEEEEC
T ss_pred HH-----CCC-CeEEEEeC
Confidence 22 243 56877753
No 83
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=29.61 E-value=1.3e+02 Score=28.04 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=56.7
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCe-eeCChhhhhcccccccccccccc---CCCCHHHHHHHHHHh
Q 013518 104 PGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT-INLTPKVVNDIHKRGGTILGTSR---GGHDTSKIVDSIQDR 179 (441)
Q Consensus 104 pGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~v~~~~~~GGs~LGssR---~~~~~~~i~~~l~~~ 179 (441)
|.-+...+.+++++.+.++..+|.-+... ..+ ..+.....+.+...|+++..... ...++...++.+++.
T Consensus 119 ~~~~~~~~~~~~~l~~~~g~~~iaii~~~------~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~ 192 (356)
T 3ipc_A 119 GRDDQQGGIAGKYLADHFKDAKVAIIHDK------TPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEA 192 (356)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCCEEEEECS------SHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHhcCCCEEEEEeCC------ChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhc
Confidence 33344556667766544454455444321 110 01111112233455666544332 235778889999999
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 180 GINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 180 ~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
+.|++|+.+-+.. +..+.+.+++.|+++++++.
T Consensus 193 ~~d~v~~~~~~~~---a~~~~~~~~~~g~~~~~~~~ 225 (356)
T 3ipc_A 193 GVSIIYWGGLHTE---AGLIIRQAADQGLKAKLVSG 225 (356)
T ss_dssp TCCEEEEESCHHH---HHHHHHHHHHHTCCCEEEEC
T ss_pred CCCEEEEccCchH---HHHHHHHHHHCCCCCcEEEe
Confidence 9999887664432 33455667777998877654
No 84
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=29.16 E-value=26 Score=34.74 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFG 231 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~G 231 (441)
..+++++.+++ +.|.+|-|||-=.+..|..++-. ++ +++|.||-| ++||-..+
T Consensus 83 ~v~~~~~~~~~-~~d~IIavGGGsv~D~aK~iA~~---~~--~p~i~IPTT-----a~tgSevt 135 (376)
T 1kq3_A 83 EIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYK---LK--KPVVIVPTI-----ASTDAPCS 135 (376)
T ss_dssp HHHHHHTTCCT-TCCEEEEEESHHHHHHHHHHHHH---TT--CCEEEEESS-----CCCSCTTS
T ss_pred HHHHHHHHHhc-CCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEecCc-----cccCcccC
Confidence 45667777777 99999999998888888877732 34 679999998 55654333
No 85
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=28.88 E-value=2.3e+02 Score=26.22 Aligned_cols=90 Identities=20% Similarity=0.335 Sum_probs=51.0
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccC---------CeeeCChhhhhcccccccccccc
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSK---------NTINLTPKVVNDIHKRGGTILGT 162 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~---------~~~~L~~~~v~~~~~~GGs~LGs 162 (441)
++ +++.+||+.+- ....+... +.. .-++|+-.|..=|++. |+--++++..+.+.. .+.-.
T Consensus 32 ~~-v~Iv~~G~~~~-~~~~~~~~----~~~--~~iI~aDgGa~~L~~~gi~Pd~ivGDfDSi~~e~~~~~~~---~i~~~ 100 (231)
T 2omk_A 32 PQ-AIILANGEYPA-HELPLRLL----AEA--QFVVCCXXAANEYISRGHTPDVIIGDGDSLLPEYKKRFSS---IILQI 100 (231)
T ss_dssp CS-EEEECSSSCCC-SHHHHHHH----HHC--SCEEEC--CHHHHHHTTCCCSEEESCGGGSCHHHHHHHGG---GEECC
T ss_pred CE-EEEEECCCCch-hHHHHHHH----hcC--CEEEEEhHHHHHHHHcCCCCCEEEeCCcCCCHHHHHhcCC---EEEeC
Confidence 44 55566787652 22333322 222 3689998888776543 333344433333321 12211
Q ss_pred ccC-CCCHHHHHHHHHHhCCCEEEEEcCCCc
Q 013518 163 SRG-GHDTSKIVDSIQDRGINQVYIIGGDGT 192 (441)
Q Consensus 163 sR~-~~~~~~i~~~l~~~~Id~LvvIGGdgs 192 (441)
... .-|.++++....+++.+-++++|+.|.
T Consensus 101 ~~kD~TD~e~Al~~a~~~g~~~I~i~Ga~Gg 131 (231)
T 2omk_A 101 SDQETNDQTKAVHYLQSKGIRKIAIVGATGK 131 (231)
T ss_dssp CSSCCCHHHHHHHHHHHTTCCEEEEESCSSS
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEECccCC
Confidence 111 236899999999999999999999987
No 86
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=28.31 E-value=3.4e+02 Score=24.69 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHhCCCEEEEEcCCC---------chHHHHHHHHHHHHcCCCceEEEeec
Q 013518 166 GHDTSKIVDSIQDRGINQVYIIGGDG---------TQKGAAVIYEEIRQRGLKVAVAGIPK 217 (441)
Q Consensus 166 ~~~~~~i~~~l~~~~Id~LvvIGGdg---------s~~~a~~L~~~~~~~~~~i~vvgIPk 217 (441)
..++++.++.+++.|++++=+-.... +...+..+.+.++++|+.+..++.|.
T Consensus 29 ~~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~ 89 (295)
T 3cqj_A 29 GECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLSA 89 (295)
T ss_dssp CSCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEGG
T ss_pred CCCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 35789999999999999988766543 23445677778888898876666664
No 87
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=28.20 E-value=30 Score=33.91 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDND 222 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDND 222 (441)
..+++ +.+++.+.|.++-|||-=.++.|..++ +. ++ +++|.||-|.-.|
T Consensus 77 ~v~~~-~~~~~~~~d~IIavGGGsv~D~aK~vA-~~--~~--~p~i~IPTT~~tg 125 (354)
T 3ce9_A 77 EIGTN-AFKIPAEVDALIGIGGGKAIDAVKYMA-FL--RK--LPFISVPTSTSND 125 (354)
T ss_dssp HHHHH-HTTSCTTCCEEEEEESHHHHHHHHHHH-HH--HT--CCEEEEESCCSSG
T ss_pred HHHHH-HHhhhcCCCEEEEECChHHHHHHHHHH-hh--cC--CCEEEecCcccCC
Confidence 35667 777788999999999988888888776 32 34 6799999988754
No 88
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=28.01 E-value=2.5e+02 Score=26.26 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=41.3
Q ss_pred cccccccccccc--cCCCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEee
Q 013518 152 IHKRGGTILGTS--RGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (441)
Q Consensus 152 ~~~~GGs~LGss--R~~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (441)
+...|+.+.... ....++...++.+++.+.|++|+.+-+. .+..+.+.+++.|+++++++..
T Consensus 174 ~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~ 237 (366)
T 3td9_A 174 FTELGGQVKRVFFRSGDQDFSAQLSVAMSFNPDAIYITGYYP---EIALISRQARQLGFTGYILAGD 237 (366)
T ss_dssp HHHTTCEEEEEEECTTCCCCHHHHHHHHHTCCSEEEECSCHH---HHHHHHHHHHHTTCCSEEEECG
T ss_pred HHHCCCEEEEEEeCCCCccHHHHHHHHHhcCCCEEEEccchh---HHHHHHHHHHHcCCCceEEeeC
Confidence 344566554432 2235678889999999999988865432 3445667777789988877643
No 89
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=27.86 E-value=58 Score=24.77 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=38.1
Q ss_pred cccccCCCCHHHHHHHHHHhCCC---------EEEEEcCCCchHHHHHHHHHHHHcCCCc
Q 013518 160 LGTSRGGHDTSKIVDSIQDRGIN---------QVYIIGGDGTQKGAAVIYEEIRQRGLKV 210 (441)
Q Consensus 160 LGssR~~~~~~~i~~~l~~~~Id---------~LvvIGGdgs~~~a~~L~~~~~~~~~~i 210 (441)
+|+=+...+-+++.+.|+..++. +-|.+|.+.+...|..+.+.+++.|++.
T Consensus 14 vGaF~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~ 73 (81)
T 1uta_A 14 CGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTN 73 (81)
T ss_dssp CCEESCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSC
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCc
Confidence 34444445567888888888877 4578899999888988888888777653
No 90
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=27.52 E-value=3.2e+02 Score=25.47 Aligned_cols=29 Identities=3% Similarity=-0.120 Sum_probs=22.7
Q ss_pred CeeEEEEccCCCC-cchhHHHHHHHHHHHH
Q 013518 91 EVHACIVTCGGLC-PGLNTVIREIVCGLYH 119 (441)
Q Consensus 91 ~~~iaIl~sGG~a-pGmNa~Ir~~v~~~~~ 119 (441)
..+||++..+-.. |=...+++++.+.+.+
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~ 32 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARD 32 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHH
Confidence 4589999987766 7788888888877754
No 91
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=26.90 E-value=75 Score=27.54 Aligned_cols=49 Identities=33% Similarity=0.557 Sum_probs=34.1
Q ss_pred CCHHHHHHHHH-HhCCCEEEEEcCCCchHHHHHHHHHHHHc-CCCceEEEeecc
Q 013518 167 HDTSKIVDSIQ-DRGINQVYIIGGDGTQKGAAVIYEEIRQR-GLKVAVAGIPKT 218 (441)
Q Consensus 167 ~~~~~i~~~l~-~~~Id~LvvIGGdgs~~~a~~L~~~~~~~-~~~i~vvgIPkT 218 (441)
.|..-+++.++ ...+|.++++-||+=|.-+. +.++++ |..+-+++.|+.
T Consensus 94 ~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv---~~lr~~~G~~V~v~g~~~~ 144 (165)
T 2qip_A 94 WDVGITLDAIEIAPDVDRVILVSGDGDFSLLV---ERIQQRYNKKVTVYGVPRL 144 (165)
T ss_dssp CHHHHHHHHHHHGGGCSEEEEECCCGGGHHHH---HHHHHHHCCEEEEEECGGG
T ss_pred ccHHHHHHHHHhhccCCEEEEEECChhHHHHH---HHHHHHcCcEEEEEeCCCc
Confidence 35555555443 25699999999999987644 455564 888878887753
No 92
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=26.84 E-value=31 Score=35.40 Aligned_cols=54 Identities=19% Similarity=0.184 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCCh
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGF 232 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~Gf 232 (441)
..+++++.+++ +.|.+|-|||-=.++.|..++-. ++ +++|.||-| .+||-..+-
T Consensus 134 ~v~~~~~~~~~-~~D~IIAvGGGSviD~AK~iA~~---~g--iP~I~IPTT-----AgtgSevt~ 187 (450)
T 1ta9_A 134 ELDKLRKQCPD-DTQVIIGVGGGKTMDSAKYIAHS---MN--LPSIICPTT-----ASSDAATSS 187 (450)
T ss_dssp HHHHHHTTSCT-TCCEEEEEESHHHHHHHHHHHHH---TT--CCEEEEESS-----CSCSCTTCS
T ss_pred HHHHHHHHHhh-CCCEEEEeCCcHHHHHHHHHHHh---cC--CCEEEEeCC-----CccCcccCC
Confidence 35666666777 99999999998888888877732 34 679999999 556544443
No 93
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=26.83 E-value=24 Score=30.74 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHH--HHHHHHHcCCCceEEEeeccccC
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAV--IYEEIRQRGLKVAVAGIPKTIDN 221 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~--L~~~~~~~~~~i~vvgIPkTIDN 221 (441)
.+.+++++.|++.+++-++|+||-.-+..+.. |.+ .+.+.-+|+.+-+
T Consensus 80 ~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~~~lvD-------el~l~~~p~~lG~ 129 (168)
T 1cz3_A 80 GSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVD-------ELFVTVEPYVFGK 129 (168)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEECHHHHHHHHHTTCCS-------EEEEEECSEEESS
T ss_pred CCHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCCC-------EEEEEEeceecCC
Confidence 36889999999999999999999876665443 222 3567888988754
No 94
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=26.64 E-value=70 Score=30.81 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=47.9
Q ss_pred eeCChhhhhcccccc-ccccccccC-CCCHHHHHHHHHHhCCCEEEEEc----CCCchHHHHHHHHHHH-Hc-CCCceEE
Q 013518 142 INLTPKVVNDIHKRG-GTILGTSRG-GHDTSKIVDSIQDRGINQVYIIG----GDGTQKGAAVIYEEIR-QR-GLKVAVA 213 (441)
Q Consensus 142 ~~L~~~~v~~~~~~G-Gs~LGssR~-~~~~~~i~~~l~~~~Id~LvvIG----Gdgs~~~a~~L~~~~~-~~-~~~i~vv 213 (441)
++++.+++-.....+ +...-||-- ..++.++.+.+.+.+ +.+++|. =.||+.+|...++.+. ++ +.+|.||
T Consensus 44 ~di~~~efy~~~~~~~~~~p~TSqps~~~~~~~f~~l~~~g-~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~~~~~I~Vi 122 (297)
T 3nyi_A 44 VDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQG-FPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVI 122 (297)
T ss_dssp TTBCHHHHHHHHHHCTTCCCEEECCCHHHHHHHHHHHHTTT-CCEEEEESCTTTCSHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCHHHHHHHHHhCCCCCceecCCCHHHHHHHHHHHHHCC-CeEEEEECCCcHhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 467888777766555 466667664 346777777777778 7777763 5788999888876653 33 4455554
No 95
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=25.85 E-value=42 Score=32.71 Aligned_cols=50 Identities=24% Similarity=0.458 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCc------------hHHHHHHHHHHHHc-C--CCceEEEee
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGT------------QKGAAVIYEEIRQR-G--LKVAVAGIP 216 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs------------~~~a~~L~~~~~~~-~--~~i~vvgIP 216 (441)
..++..+..++..||+.++++.||-. +..|..|.+.+++. | +.|-+.+-|
T Consensus 86 ~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yP 150 (310)
T 3apt_A 86 KEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYP 150 (310)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECT
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 45677888889999999999999932 44577777777665 4 555555555
No 96
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=25.73 E-value=3.7e+02 Score=24.26 Aligned_cols=123 Identities=11% Similarity=0.074 Sum_probs=66.5
Q ss_pred CeeEEEEcc----CCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC
Q 013518 91 EVHACIVTC----GGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG 166 (441)
Q Consensus 91 ~~~iaIl~s----GG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~ 166 (441)
..+||++.. .-..|=...+++++.+.+.+ .+ .++.-+. + ...
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~-~~~ 51 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGK-RG-LDLLLIP-------------------------------D-EPG 51 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------E-CTT
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------C-CCh
Confidence 458999986 34455566677777776643 22 2332110 0 012
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCC-CCCChhh--HHHHHHHHH
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDT--AVEEAQRAI 243 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td-~s~GfdT--A~~~~~~~i 243 (441)
....++.+.|...++|++++.+.+.+-.. .+.+.+.+ +|+|.+ |++.+... .++++|- +...+++.+
T Consensus 52 ~~~~~~~~~l~~~~vdGiIi~~~~~~~~~----~~~l~~~~--iPvV~~----~~~~~~~~~~~V~~D~~~~~~~a~~~L 121 (294)
T 3qk7_A 52 EKYQSLIHLVETRRVDALIVAHTQPEDFR----LQYLQKQN--FPFLAL----GRSHLPKPYAWFDFDNHAGASLAVKRL 121 (294)
T ss_dssp CCCHHHHHHHHHTCCSEEEECSCCSSCHH----HHHHHHTT--CCEEEE----SCCCCSSCCEEEEECHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHhCC--CCEEEE----CCCCCCCCCCEEEcChHHHHHHHHHHH
Confidence 23457788899999999999998765432 23344445 457644 44433222 2444442 333333332
Q ss_pred HHHHHhhhcCCceEEEEEec
Q 013518 244 NAAHVEAESIENGIGVVKLM 263 (441)
Q Consensus 244 ~~i~~~a~s~~~rv~iVEvM 263 (441)
.. .. +++|.++--.
T Consensus 122 ---~~--~G-~~~I~~i~~~ 135 (294)
T 3qk7_A 122 ---LE--LG-HQRIAFVSTD 135 (294)
T ss_dssp ---HH--TT-CCCEEEEEES
T ss_pred ---HH--CC-CceEEEEeCC
Confidence 22 24 4567777543
No 97
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=25.54 E-value=72 Score=28.97 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=8.0
Q ss_pred CCceEEEeec
Q 013518 208 LKVAVAGIPK 217 (441)
Q Consensus 208 ~~i~vvgIPk 217 (441)
...||||||-
T Consensus 99 T~~PVIGVPv 108 (181)
T 4b4k_A 99 TNLPVIGVPV 108 (181)
T ss_dssp CCSCEEEEEC
T ss_pred CCCCEEEEec
Confidence 3578999997
No 98
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=25.37 E-value=57 Score=26.32 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCCceEEEeeccccCCC
Q 013518 196 AAVIYEEIRQRGLKVAVAGIPKTIDNDI 223 (441)
Q Consensus 196 a~~L~~~~~~~~~~i~vvgIPkTIDNDi 223 (441)
...|.+.+++++...-|||+|+++|+..
T Consensus 40 ~~~l~~li~e~~v~~iVvGlP~~mdGt~ 67 (98)
T 1iv0_A 40 VEALLDFVRREGLGKLVVGLPLRTDLKE 67 (98)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCCCCSSS
T ss_pred HHHHHHHHHHcCCCEEEEeeccCCCCCc
Confidence 3445555556677777999999999754
No 99
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=25.22 E-value=57 Score=32.59 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHhC--C---CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 168 DTSKIVDSIQDRG--I---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 168 ~~~~i~~~l~~~~--I---d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
..+++.+.+++++ + |.++-+||==.+..|..++--. .++ +++|.||-|.
T Consensus 88 ~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTl 141 (393)
T 1sg6_A 88 TKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY-MRG--VRYVQVPTTL 141 (393)
T ss_dssp HHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSH
T ss_pred HHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHh-cCC--CCEEEECCch
Confidence 4678999999999 9 9999999977777776665322 345 6799999985
No 100
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=25.17 E-value=3.6e+02 Score=23.91 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=45.0
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCH
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~ 169 (441)
+..+||++...-..|=...++.++.+.+.+ ++ .++.-+ .+. .....
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~-------------------------------~~~-~~~~~ 49 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTP-KG-YRLSVI-------------------------------DSL-TSQAG 49 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGG-GT-CEEEEE-------------------------------CSS-SSCSS
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHH-CC-CEEEEE-------------------------------eCC-CchHH
Confidence 345899999877778888889998887753 33 233211 111 12233
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCc
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGT 192 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs 192 (441)
.+.++.|...++|+++ ++.+..
T Consensus 50 ~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 50 TDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp SCHHHHHHTTCCSEEE-EESCC-
T ss_pred HHHHHHHHhCCCCEEE-ecCCCC
Confidence 4577788899999999 887765
No 101
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=24.99 E-value=3.8e+02 Score=24.04 Aligned_cols=122 Identities=11% Similarity=0.070 Sum_probs=65.0
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-CC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HD 168 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~ 168 (441)
+..+||++...-..|-...+++++.+.+.+ .+ .++.-+ .+... ..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~~--------------------------------~~~~~~~~ 52 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEK-NG-YRILLC--------------------------------NTESDLAR 52 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TT-CEEEEE--------------------------------ECTTCHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHH-cC-CEEEEE--------------------------------eCCCCHHH
Confidence 345899999765666677777887776643 22 222100 01111 12
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC-CCCCChhh--HHHHHHHHHHH
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFDT--AVEEAQRAINA 245 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t-d~s~GfdT--A~~~~~~~i~~ 245 (441)
..+.++.|...++|++++.+.+.+-. ..+.+. .+ +|+|.+ |.+.+.. -.++++|- +...+++.+
T Consensus 53 ~~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~l~-~~--iPvV~~----~~~~~~~~~~~V~~D~~~~g~~a~~~L-- 119 (285)
T 3c3k_A 53 SRSCLTLLSGKMVDGVITMDALSELP----ELQNII-GA--FPWVQC----AEYDPLSTVSSVSIDDVAASEYVVDQL-- 119 (285)
T ss_dssp HHHHTHHHHTTCCSEEEECCCGGGHH----HHHHHH-TT--SSEEEE----SSCCTTSSSCEEECCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCChH----HHHHHh-cC--CCEEEE----ccccCCCCCCEEEEChHHHHHHHHHHH--
Confidence 34567778889999999988754421 223343 34 567765 3333321 12455543 333333333
Q ss_pred HHHhhhcCCceEEEEEe
Q 013518 246 AHVEAESIENGIGVVKL 262 (441)
Q Consensus 246 i~~~a~s~~~rv~iVEv 262 (441)
.. .. +++|.++--
T Consensus 120 -~~--~G-~~~I~~i~~ 132 (285)
T 3c3k_A 120 -VK--SG-KKRIALINH 132 (285)
T ss_dssp -HH--TT-CCCEEEEEC
T ss_pred -HH--cC-CCeEEEEeC
Confidence 22 14 456877754
No 102
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=24.44 E-value=62 Score=29.20 Aligned_cols=53 Identities=19% Similarity=0.360 Sum_probs=36.8
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCEEEEE-cCCCchHHHHHHHHHHHHcCCCceEEEeecc
Q 013518 159 ILGTSRGGHDTSKIVDSIQDRGINQVYII-GGDGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (441)
Q Consensus 159 ~LGssR~~~~~~~i~~~l~~~~Id~LvvI-GGdgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (441)
+.+--|+++.+.+.++..++.+++.+|.+ |+.+.+-+...= ....||||+|-.
T Consensus 46 V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~-------~t~~PVIgVPv~ 99 (173)
T 4grd_A 46 VVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAA-------KTTVPVLGVPVA 99 (173)
T ss_dssp ECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHH-------HCCSCEEEEEEC
T ss_pred EEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhee-------cCCCCEEEEEcC
Confidence 34445766667788888888899977765 666666665322 135789999975
No 103
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=24.14 E-value=2.4e+02 Score=25.77 Aligned_cols=134 Identities=13% Similarity=0.050 Sum_probs=71.5
Q ss_pred CeeEEEEccC-----CCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC
Q 013518 91 EVHACIVTCG-----GLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG 165 (441)
Q Consensus 91 ~~~iaIl~sG-----G~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~ 165 (441)
..+||++... -.-|=...++.++.+.+.+ ++ .++.- ..+..
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~--------------------------------~~~~~ 67 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNV-RG-YSTRM--------------------------------TVSEN 67 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHH-HT-CEEEE--------------------------------CCCSS
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHHH-CC-CEEEE--------------------------------EeCCC
Confidence 4589999876 4456666777777766643 22 22221 01111
Q ss_pred -CCCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC-CCCCChh--hHHHHHHH
Q 013518 166 -GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI-DKSFGFD--TAVEEAQR 241 (441)
Q Consensus 166 -~~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t-d~s~Gfd--TA~~~~~~ 241 (441)
.....++++.|...++|++++.+.+.+-. ..+.+.+.+ +|||.+ |+++... ..++++| .+...+++
T Consensus 68 ~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~----~~~~l~~~~--iPvV~i----~~~~~~~~~~~V~~D~~~~g~~a~~ 137 (305)
T 3huu_A 68 SGDLYHEVKTMIQSKSVDGFILLYSLKDDP----IEHLLNEFK--VPYLIV----GKSLNYENIIHIDNDNIDAAYQLTQ 137 (305)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEESSCBTTCH----HHHHHHHTT--CCEEEE----SCCCSSTTCCEEECCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCEEEEeCCcCCcH----HHHHHHHcC--CCEEEE----CCCCcccCCcEEEeCHHHHHHHHHH
Confidence 11235678889999999999998775532 223344445 557754 4443211 2234443 23333333
Q ss_pred HHHHHHHhhhcCCceEEEEEecC-------CCccHHHHHH
Q 013518 242 AINAAHVEAESIENGIGVVKLMG-------RYCGFIAMYA 274 (441)
Q Consensus 242 ~i~~i~~~a~s~~~rv~iVEvMG-------r~~G~LA~~~ 274 (441)
.+-+ ..+ ++|.++--.. |..||.....
T Consensus 138 ~L~~-----~G~-~~I~~i~~~~~~~~~~~R~~Gf~~~l~ 171 (305)
T 3huu_A 138 YLYH-----LGH-RHILFLQESGHYAVTEDRSVGFKQYCD 171 (305)
T ss_dssp HHHH-----TTC-CSEEEEEESSCBHHHHHHHHHHHHHHH
T ss_pred HHHH-----CCC-CeEEEEcCCcccchhHHHHHHHHHHHH
Confidence 3321 244 5677775332 4456665443
No 104
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=23.95 E-value=1.2e+02 Score=24.77 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeec
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (441)
+.+.+.++++++|.+++--+..+......+.+.+.+.++ .+..+|.
T Consensus 55 ~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv--~v~~vP~ 100 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHV--EVLTIPN 100 (141)
T ss_dssp GGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTC--EEEECCC
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCC--eEEECCC
Confidence 346667888999998887676666666778888877665 5777885
No 105
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=23.78 E-value=1.1e+02 Score=27.33 Aligned_cols=89 Identities=18% Similarity=0.302 Sum_probs=51.5
Q ss_pred cccccCCCCHHHHHHHHHHhCCCEEEEEcC-CCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHH
Q 013518 160 LGTSRGGHDTSKIVDSIQDRGINQVYIIGG-DGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 238 (441)
Q Consensus 160 LGssR~~~~~~~i~~~l~~~~Id~LvvIGG-dgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~ 238 (441)
.+--|+++.+.+++++.++.+++.+|.+-| .+.+-+.. +- ....||||+|-... ++. |.|+
T Consensus 38 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~~-~l~------G~ds---- 99 (163)
T 3ors_A 38 VSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMV--AS-----LTTLPVIGVPIETK-SLK------GIDS---- 99 (163)
T ss_dssp CCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECCT-TTT------THHH----
T ss_pred ECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHH--Hh-----ccCCCEEEeeCCCC-CCC------CHHH----
Confidence 344466666777788888888997776644 44454432 22 13578999996543 222 3332
Q ss_pred HHHHHHHHHHhhhcCCceE--EEEEe---cCCCccHHHHHH
Q 013518 239 AQRAINAAHVEAESIENGI--GVVKL---MGRYCGFIAMYA 274 (441)
Q Consensus 239 ~~~~i~~i~~~a~s~~~rv--~iVEv---MGr~~G~LA~~~ 274 (441)
+..... ++.+| ..|=. =|.++|++|+..
T Consensus 100 -------LlS~vq-mp~GvPVatV~I~~a~~~nAa~lAa~I 132 (163)
T 3ors_A 100 -------LLSIVQ-MPGGIPVATTAIGAAGAKNAGILAARM 132 (163)
T ss_dssp -------HHHHHT-CCTTSCCEECCSTHHHHHHHHHHHHHH
T ss_pred -------HHHHhh-CCCCCceEEEEcCCcccHHHHHHHHHH
Confidence 222222 34444 66655 377888888654
No 106
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=23.43 E-value=3.4e+02 Score=24.14 Aligned_cols=128 Identities=12% Similarity=0.073 Sum_probs=66.0
Q ss_pred CCeeEEEEccCCC--CcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccc-cCC
Q 013518 90 DEVHACIVTCGGL--CPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTS-RGG 166 (441)
Q Consensus 90 ~~~~iaIl~sGG~--apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGss-R~~ 166 (441)
+..+||++...-. .|-...+++++.+.+.+ .+ .++.- ..+. ...
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~-------------------------------~~~~~~~~ 50 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKE-YE-IKLEF-------------------------------MAPEKEED 50 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHH-HT-CEEEE-------------------------------CCCSSTTC
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHH-cC-CEEEE-------------------------------ecCCCCCC
Confidence 3458999987655 67777788888776643 22 12110 0000 111
Q ss_pred -CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC--CCCCChhh--HHHHHHH
Q 013518 167 -HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDT--AVEEAQR 241 (441)
Q Consensus 167 -~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t--d~s~GfdT--A~~~~~~ 241 (441)
....+.++.|...++|++++.+.+.... ....+.+.+.+ +|+|.+ |.+.+.. ..++++|- +...+++
T Consensus 51 ~~~~~~~~~~l~~~~vdgii~~~~~~~~~--~~~~~~~~~~~--iPvV~~----~~~~~~~~~~~~V~~D~~~~g~~~~~ 122 (289)
T 3brs_A 51 YLVQNELIEEAIKRKPDVILLAAADYEKT--YDAAKEIKDAG--IKLIVI----DSGMKQDIADITVATDNIQAGIRIGA 122 (289)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCSCTTTT--HHHHTTTGGGT--CEEEEE----SSCCSSCCCSEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCChHHh--HHHHHHHHHCC--CcEEEE----CCCCCCCcceEEEeeChHHHHHHHHH
Confidence 1234567888889999999998765431 11122232334 677765 4333322 23455543 3333333
Q ss_pred HHHHHHHhhhcCCceEEEEEe
Q 013518 242 AINAAHVEAESIENGIGVVKL 262 (441)
Q Consensus 242 ~i~~i~~~a~s~~~rv~iVEv 262 (441)
.+ ... ...+++|.++--
T Consensus 123 ~L---~~~-~G~~~~i~~i~~ 139 (289)
T 3brs_A 123 VT---KNL-VRKSGKIGVISF 139 (289)
T ss_dssp HH---HHH-TSSSCEEEEEES
T ss_pred HH---HHH-cCCCceEEEEEC
Confidence 32 221 121467877753
No 107
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=23.23 E-value=4e+02 Score=26.02 Aligned_cols=59 Identities=17% Similarity=0.101 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHH---hCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCC
Q 013518 167 HDTSKIVDSIQD---RGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID 227 (441)
Q Consensus 167 ~~~~~i~~~l~~---~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td 227 (441)
.++.++++.+++ .+.|++||.=|-+||.-...+....- +.+.|||..=+=.--+.+.+|
T Consensus 72 ~~~~~la~~i~~~~~~~~dGvVItHGTDTm~~TA~~L~~~l--~~~kPVVlTGa~rp~~~~~sD 133 (334)
T 3nxk_A 72 EIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETAYFLNLTI--KSDKPVVLVGAMRPSTAISAD 133 (334)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHC--CCCSCEEEECCSSCTTSTTCS
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEECCCchHHHHHHHHHHHc--CCCCCEEEECCCCCCCCCCch
Confidence 455666665555 47999999999999966444444332 455566655443333444444
No 108
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=23.18 E-value=4.2e+02 Score=23.99 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=39.9
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccc-cccCCCCH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILG-TSRGGHDT 169 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LG-ssR~~~~~ 169 (441)
..+|||+ ..-.-|-...+++++-+.+.+ + ||+|- ++. + .+. |.+..+..
T Consensus 2 ~~~Igvi-~~~~~p~~~~i~~gi~~~l~~-~----------gy~g~---~v~-l--------------~~~~~~~~~~~~ 51 (295)
T 3lft_A 2 NAKIGVL-QFVSHPSLDLIYKGIQDGLAE-E----------GYKDD---QVK-I--------------DFMNSEGDQSKV 51 (295)
T ss_dssp CEEEEEE-ECSCCHHHHHHHHHHHHHHHH-T----------TCCGG---GEE-E--------------EEEECTTCHHHH
T ss_pred ceEEEEE-EccCChhHHHHHHHHHHHHHH-c----------CCCCC---ceE-E--------------EEecCCCCHHHH
Confidence 3589998 344567777788888777643 2 33220 100 0 001 11111224
Q ss_pred HHHHHHHHHhCCCEEEEEc
Q 013518 170 SKIVDSIQDRGINQVYIIG 188 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIG 188 (441)
.+.++.|.+.++|+++++|
T Consensus 52 ~~~~~~l~~~~vDgII~~~ 70 (295)
T 3lft_A 52 ATMSKQLVANGNDLVVGIA 70 (295)
T ss_dssp HHHHHHHTTSSCSEEEEES
T ss_pred HHHHHHHHhcCCCEEEECC
Confidence 5678889999999999986
No 109
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=22.85 E-value=1.1e+02 Score=27.57 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=33.7
Q ss_pred cccccCCCCHHHHHHHHHHhCCCEEEEEcC-CCchHHHHHHHHHHHHcCCCceEEEeecc
Q 013518 160 LGTSRGGHDTSKIVDSIQDRGINQVYIIGG-DGTQKGAAVIYEEIRQRGLKVAVAGIPKT 218 (441)
Q Consensus 160 LGssR~~~~~~~i~~~l~~~~Id~LvvIGG-dgs~~~a~~L~~~~~~~~~~i~vvgIPkT 218 (441)
.+--|+++...+++++.++.+++.+|.+-| .+.+-+.. +- ....||||+|-.
T Consensus 47 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~ 99 (174)
T 3kuu_A 47 VSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGML--AA-----KTLVPVLGVPVQ 99 (174)
T ss_dssp CCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHH--HH-----TCSSCEEEEEEC
T ss_pred EcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHH--Hh-----ccCCCEEEeeCC
Confidence 334466666777777778888997776654 44444432 22 346789999964
No 110
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=22.73 E-value=4.5e+02 Score=24.20 Aligned_cols=87 Identities=8% Similarity=0.101 Sum_probs=50.4
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-CC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HD 168 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~ 168 (441)
+..+||++...-..|-...++.++-+.+.+ ++ .++.- ..+... ..
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~~--------------------------------~~~~~~~~~ 107 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASM-YK-YNMIL--------------------------------ANSDNDVEK 107 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHH-TT-CEEEE--------------------------------EECTTCHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH-cC-CEEEE--------------------------------EECCCChHH
Confidence 345899998765666677777777776643 22 22210 011111 12
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEee
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (441)
....++.|...++|++++.+.+.+-.. .+.+.+.+ +|+|.+-
T Consensus 108 ~~~~~~~l~~~~vdgiI~~~~~~~~~~----~~~l~~~~--iPvV~~~ 149 (332)
T 2o20_A 108 EEKVLETFLSKQVDGIVYMGSSLDEKI----RTSLKNSR--TPVVLVG 149 (332)
T ss_dssp HHHHHHHHHHTTCSEEEECSSCCCHHH----HHHHHHHC--CCEEEES
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCHHH----HHHHHhCC--CCEEEEc
Confidence 345678888899999999987554322 22333345 4577653
No 111
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=22.40 E-value=1.3e+02 Score=30.07 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=44.8
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCC-e--eeCChhhhhccccccccccccccCC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKN-T--INLTPKVVNDIHKRGGTILGTSRGG 166 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~-~--~~L~~~~v~~~~~~GGs~LGssR~~ 166 (441)
+.+||.|+-+||- -+ +++..+.+..+..+||.. .|..|..... . +.+ ..
T Consensus 2 ~~mkvlviG~ggr---e~----ala~~l~~s~~v~~v~~~-pgn~g~~~~~~~~~~~~--------------------~~ 53 (431)
T 3mjf_A 2 NAMNILIIGNGGR---EH----ALGWKAAQSPLADKIYVA-PGNAGTALEPTLENVDI--------------------AA 53 (431)
T ss_dssp -CEEEEEEECSHH---HH----HHHHHHTTCTTEEEEEEE-ECCHHHHHCTTCEECCC--------------------CT
T ss_pred CCcEEEEECCCHH---HH----HHHHHHHhCCCCCEEEEE-CCCHHHhhhcccceecC--------------------Cc
Confidence 3479999988862 22 344445444444567766 3444433110 0 111 12
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCC
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGL 208 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~ 208 (441)
.+.+.+++.++++++|.+++ |....+ +..+++.+++.|+
T Consensus 54 ~d~~~l~~~a~~~~id~vv~-g~e~~l--~~~~~~~l~~~Gi 92 (431)
T 3mjf_A 54 TDIAGLLAFAQSHDIGLTIV-GPEAPL--VIGVVDAFRAAGL 92 (431)
T ss_dssp TCHHHHHHHHHHTTEEEEEE-CSHHHH--HTTHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhCcCEEEE-CCchHH--HHHHHHHHHhcCC
Confidence 35677777778888875544 422222 2334455555553
No 112
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=22.26 E-value=1.1e+02 Score=27.12 Aligned_cols=85 Identities=20% Similarity=0.263 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHh-C----CCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC--CCCCChhh-HHHH
Q 013518 167 HDTSKIVDSIQDR-G----INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI--DKSFGFDT-AVEE 238 (441)
Q Consensus 167 ~~~~~i~~~l~~~-~----Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t--d~s~GfdT-A~~~ 238 (441)
.|+..+.+.|.+. . =|-++|=||-|=+..|....++ .|+.++|+|+-|- ...+... ...+--++ |+..
T Consensus 61 DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~vl~e---lg~~i~v~glAK~-~e~l~~~~~~i~L~~~s~~l~l 136 (159)
T 2nrr_A 61 DDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKE---IGKDCPVVGLAKK-EETVVFENREIHLPHDHPVLRL 136 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHHHHH---TTCCCCEEEEC-----CEEETTEEECCCTTCHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHHHHH---cCCCccEEEEEcC-CcEEEeCCCeeecCCCCHHHHH
Confidence 5677777766654 2 4667777999988888877654 5888999999993 1222211 23333333 5677
Q ss_pred HHHHHHHHHHhhhcCCc
Q 013518 239 AQRAINAAHVEAESIEN 255 (441)
Q Consensus 239 ~~~~i~~i~~~a~s~~~ 255 (441)
+++.=|.+|.-|-+.|+
T Consensus 137 lqriRDEaHRFAIt~HR 153 (159)
T 2nrr_A 137 LVQIRDETHRFAVSYHR 153 (159)
T ss_dssp HHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777776554
No 113
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=22.11 E-value=4.3e+02 Score=23.71 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=51.1
Q ss_pred eeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-CCHH
Q 013518 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HDTS 170 (441)
Q Consensus 92 ~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~~~ 170 (441)
.+||++...-..|-...++.++.+.+.+ ++..++. +-.+... ....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~--------------------------------~~~~~~~~~~~~ 49 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLL--------------------------------MNDSQNDQSKQN 49 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT-CTTEEEE--------------------------------EEECTTCHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh-cCCeEEE--------------------------------EecCCCCHHHHH
Confidence 4899998766667777788888777642 2210211 0011111 1234
Q ss_pred HHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeec
Q 013518 171 KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPK 217 (441)
Q Consensus 171 ~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPk 217 (441)
..++.|...++|++++.+.+.+.. ....+.+.+.+ +|||.+-.
T Consensus 50 ~~~~~~~~~~vdgiii~~~~~~~~--~~~~~~~~~~~--iPvV~~~~ 92 (309)
T 2fvy_A 50 DQIDVLLAKGVKALAINLVDPAAA--GTVIEKARGQN--VPVVFFNK 92 (309)
T ss_dssp HHHHHHHHTTCSEEEECCSSGGGH--HHHHHHHHTTT--CCEEEESS
T ss_pred HHHHHHHHcCCCEEEEeCCCcchh--HHHHHHHHHCC--CcEEEecC
Confidence 567788889999999988776531 12233444444 56776533
No 114
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=22.09 E-value=2.9e+02 Score=26.14 Aligned_cols=105 Identities=10% Similarity=0.006 Sum_probs=57.9
Q ss_pred cchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCe-eeCChhhhhccccccccccccccC---CCCHHHHHHH--HH
Q 013518 104 PGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT-INLTPKVVNDIHKRGGTILGTSRG---GHDTSKIVDS--IQ 177 (441)
Q Consensus 104 pGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~v~~~~~~GGs~LGssR~---~~~~~~i~~~--l~ 177 (441)
|--+...+.+++.+.+.++..+|.-+.. - +..+ ..+.....+.+...|+.+...... ..++...+.. |+
T Consensus 122 ~~~~~~~~~~~~~l~~~~g~~~iaii~~-~----~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~ 196 (391)
T 3eaf_A 122 PDYSTQACSGLAFLASEFGQGKLALAYD-S----KVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREML 196 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHCSEEEEEEEC-T----TCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEEe-c----CChhHHHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHH
Confidence 3345556666676654335444444432 0 0111 111111223344556666544332 3467788888 99
Q ss_pred HhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEee
Q 013518 178 DRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (441)
Q Consensus 178 ~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (441)
+.+.|++|+.+ ++. .+..+.+.+++.|+++++++..
T Consensus 197 ~~~~dav~~~~-~~~--~~~~~~~~~~~~g~~~~~~~~~ 232 (391)
T 3eaf_A 197 AADPDYVWCGN-TIS--SCSLLGRAMAKVGLDAFLLTNV 232 (391)
T ss_dssp TTCCSEEEECS-CHH--HHHHHHHHHHHHTCCCEEEECG
T ss_pred HcCCCEEEEec-CcH--HHHHHHHHHHHCCCCceEEEec
Confidence 99999987754 322 3445666677789998887653
No 115
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=22.05 E-value=4.3e+02 Score=23.66 Aligned_cols=89 Identities=16% Similarity=0.212 Sum_probs=49.5
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-CC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HD 168 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~ 168 (441)
+..+||++...-..|-...+++++-+.+.+ ++ .++. ++..+... ..
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~-~g-~~~~-------------------------------~~~~~~~~~~~ 49 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKE-FN-LNAS-------------------------------QVGPSSTDAPQ 49 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHH-TT-EEEE-------------------------------EECCSSSCHHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHH-cC-CEEE-------------------------------EECCCCCCHHH
Confidence 346899998665566667777777766643 22 1211 01111111 12
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEe
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGI 215 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgI 215 (441)
..+.++.|...++|++++.+.+.+ ....+.+.+.+.+ +|+|.+
T Consensus 50 ~~~~~~~l~~~~vdgiii~~~~~~--~~~~~~~~~~~~~--ipvV~~ 92 (303)
T 3d02_A 50 QVKIIEDLIARKVDAITIVPNDAN--VLEPVFKKARDAG--IVVLTN 92 (303)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCHH--HHHHHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEecCChH--HHHHHHHHHHHCC--CeEEEE
Confidence 345677788899999998876432 2222334444444 567765
No 116
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=21.85 E-value=2.9e+02 Score=25.06 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCC---CCCCChh--hHHHHHHHHH
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVI---DKSFGFD--TAVEEAQRAI 243 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~t---d~s~Gfd--TA~~~~~~~i 243 (441)
..++++.|...++|++++.+.+.+-. +.+.+.+.+ +|+|.+ |++++.. -.++++| .+...+++.+
T Consensus 57 ~~~~~~~l~~~~vdGiI~~~~~~~~~----~~~~l~~~~--iPvV~i----~~~~~~~~~~~~~V~~D~~~~~~~a~~~L 126 (295)
T 3hcw_A 57 MDEVYKMIKQRMVDAFILLYSKENDP----IKQMLIDES--MPFIVI----GKPTSDIDHQFTHIDNDNILASENLTRHV 126 (295)
T ss_dssp HHHHHHHHHTTCCSEEEESCCCTTCH----HHHHHHHTT--CCEEEE----SCCCSSGGGGSCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcCEEEEcCcccChH----HHHHHHhCC--CCEEEE----CCCCccccCCceEEecCcHHHHHHHHHHH
Confidence 34678889999999999998765432 223344445 457744 5555543 2345543 3444444433
Q ss_pred HHHHHhhhcCCceEEEEEe
Q 013518 244 NAAHVEAESIENGIGVVKL 262 (441)
Q Consensus 244 ~~i~~~a~s~~~rv~iVEv 262 (441)
-+ .. +++|.++--
T Consensus 127 ~~-----~G-~~~I~~i~~ 139 (295)
T 3hcw_A 127 IE-----QG-VDELIFITE 139 (295)
T ss_dssp HH-----HC-CSEEEEEEE
T ss_pred HH-----cC-CccEEEEcC
Confidence 22 25 457877754
No 117
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=21.83 E-value=3.9e+02 Score=26.61 Aligned_cols=90 Identities=13% Similarity=0.248 Sum_probs=48.2
Q ss_pred cCCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCe-eeCChhhhhccccccccccccccCC
Q 013518 88 VSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNT-INLTPKVVNDIHKRGGTILGTSRGG 166 (441)
Q Consensus 88 ~~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~-~~L~~~~v~~~~~~GGs~LGssR~~ 166 (441)
.|..+||.|+-+|| --++. +..+.+..+..++|.. .|-.|...... .. + ..
T Consensus 18 ~p~~m~ilvlG~gg---re~al----a~~l~~s~~v~~v~~~-pgn~g~~~~~~~~~----------------i----~~ 69 (442)
T 3lp8_A 18 GPGSMNVLVIGSGG---REHSM----LHHIRKSTLLNKLFIA-PGREGMSGLADIID----------------I----DI 69 (442)
T ss_dssp --CCEEEEEEECSH---HHHHH----HHHHTTCTTEEEEEEE-ECCGGGTTTSEECC----------------C----CT
T ss_pred CCCCCEEEEECCCh---HHHHH----HHHHHhCCCCCEEEEE-CCChHHhhccceee----------------c----Cc
Confidence 46778999998874 22333 3344443444456654 34444432110 00 1 23
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCC
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGL 208 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~ 208 (441)
.|.+.+++.++++++|.+++ |....+ +..+++.+++.|+
T Consensus 70 ~d~~~l~~~a~~~~id~vv~-g~E~~l--~~~~~~~l~~~Gi 108 (442)
T 3lp8_A 70 NSTIEVIQVCKKEKIELVVI-GPETPL--MNGLSDALTEEGI 108 (442)
T ss_dssp TCHHHHHHHHHHTTCCEEEE-CSHHHH--HTTHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhCCCEEEE-CCcHHH--HHHHHHHHHhcCC
Confidence 46888888999999997665 433322 2234555555553
No 118
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=21.68 E-value=83 Score=31.38 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHhCC---CEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeecccc
Q 013518 168 DTSKIVDSIQDRGI---NQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTID 220 (441)
Q Consensus 168 ~~~~i~~~l~~~~I---d~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTID 220 (441)
..+++++.++++++ |.++-+||--.+..|..++... .+| +++|.||-|.-
T Consensus 88 ~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~-~rg--ip~i~IPTTll 140 (368)
T 3qbe_A 88 VVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATW-LRG--VSIVHLPTTLL 140 (368)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHG-GGC--CEEEEEECSHH
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHh-ccC--CcEEEECCCCc
Confidence 46788899998875 9999999988888777665322 235 67999999963
No 119
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=21.60 E-value=1e+02 Score=27.81 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=35.7
Q ss_pred cccccCCCCHHHHHHHHHHhCCCEEEEEcC-CCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 160 LGTSRGGHDTSKIVDSIQDRGINQVYIIGG-DGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 160 LGssR~~~~~~~i~~~l~~~~Id~LvvIGG-dgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
.+--|.++...+++++.++.+++.+|.+-| .+.+-+.. +- ....||||+|-..
T Consensus 42 ~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv--A~-----~t~~PVIgVP~~~ 95 (174)
T 3lp6_A 42 VSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMV--AA-----ATPLPVIGVPVPL 95 (174)
T ss_dssp CCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHH--HH-----HCSSCEEEEEECC
T ss_pred ECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHH--Hh-----ccCCCEEEeeCCC
Confidence 344566667888889999999997777654 44454432 22 1357899999644
No 120
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=21.52 E-value=3.9e+02 Score=26.04 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=49.0
Q ss_pred CCCeeEEEEccCCCC-cchhHHHHHHHHHHHHhcCC-cEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC
Q 013518 89 SDEVHACIVTCGGLC-PGLNTVIREIVCGLYHMYGV-SKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG 166 (441)
Q Consensus 89 ~~~~~iaIl~sGG~a-pGmNa~Ir~~v~~~~~~~~~-~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~ 166 (441)
++..|||+|+.|+.. -+-|..+..-+..+.+.++. .++. ++-+....
T Consensus 24 ~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~-------------------------------~~e~~~~~ 72 (356)
T 3s99_A 24 EEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETT-------------------------------FLENVAEG 72 (356)
T ss_dssp --CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEE-------------------------------EECSCCTT
T ss_pred CCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEE-------------------------------EEecCCCH
Confidence 556899999987653 46777554444433333331 1111 01111112
Q ss_pred CCHHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEee
Q 013518 167 HDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216 (441)
Q Consensus 167 ~~~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIP 216 (441)
.+.++.++.|.+.+.|.+|.. |+.-.....+++ +++ -+++++.+=
T Consensus 73 ~d~~~~l~~l~~~g~d~Ii~~-g~~~~~~~~~vA---~~~-Pdv~fv~id 117 (356)
T 3s99_A 73 ADAERSIKRIARAGNKLIFTT-SFGYMDPTVKVA---KKF-PDVKFEHAT 117 (356)
T ss_dssp HHHHHHHHHHHHTTCSEEEEC-SGGGHHHHHHHH---TTC-TTSEEEEES
T ss_pred HHHHHHHHHHHHCCCCEEEEC-CHHHHHHHHHHH---HHC-CCCEEEEEe
Confidence 356788999999999955554 455444333333 222 256777663
No 121
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=21.49 E-value=2e+02 Score=26.67 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=52.5
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-CC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HD 168 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~ 168 (441)
+..+||++...-..|-...++.++.+.+.+ .+. ++. +-.+... ..
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~-~l~--------------------------------~~~~~~~~~~ 49 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKS-VGL-PYV--------------------------------PLTTEGSSEK 49 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-HTC-CEE--------------------------------EEECTTCHHH
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHH-cCC-EEE--------------------------------EecCCCCHHH
Confidence 345899999766667777788888776643 221 111 0011111 12
Q ss_pred HHHHHHHHHHhC--CCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccc
Q 013518 169 TSKIVDSIQDRG--INQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTI 219 (441)
Q Consensus 169 ~~~i~~~l~~~~--Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTI 219 (441)
..+.++.|...+ +|++++.+.+... ...+.+.+.+.+ +++|.+-...
T Consensus 50 ~~~~i~~l~~~~~~vdgiIi~~~~~~~--~~~~~~~~~~~~--iPvV~~~~~~ 98 (332)
T 2rjo_A 50 GIADIRALLQKTGGNLVLNVDPNDSAD--ARVIVEACSKAG--AYVTTIWNKP 98 (332)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCSSHHH--HHHHHHHHHHHT--CEEEEESCCC
T ss_pred HHHHHHHHHHCCCCCCEEEEeCCCHHH--HHHHHHHHHHCC--CeEEEECCCC
Confidence 345677788888 9999998876432 112233444445 5677664433
No 122
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=21.45 E-value=1.2e+02 Score=27.91 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=53.2
Q ss_pred EEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEccccccccc---------CCeeeCChhhhhccccccccccccccC
Q 013518 95 CIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---------KNTINLTPKVVNDIHKRGGTILGTSRG 165 (441)
Q Consensus 95 aIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~---------~~~~~L~~~~v~~~~~~GGs~LGssR~ 165 (441)
+++.+||+.+-.- . ...-++|+-.|..=|++ ||+-.++++..+.+...|=.++--...
T Consensus 4 ~~I~~gG~~~~~~-----------~--~~~~~i~~DgGa~~l~~~g~~Pd~ivGDfDSi~~~~~~~~~~~~~~i~~~~~e 70 (218)
T 3ihk_A 4 VALFSGGDLTYFT-----------R--DFDYFVGIDKGSSFLLKNQLPLDLAIGDFDSVSAEEFKQIKAKAKKLVMAPAE 70 (218)
T ss_dssp EEEECSSCCSCCC-----------C--CCSEEEEETHHHHHHHHTTCCCSEEEECCTTSCHHHHHHHHTTCSSEEECCSS
T ss_pred EEEEECCCCccCc-----------c--cCCEEEEEcHHHHHHHHcCCCCCEEEeCcccCCHHHHHHHHhcCCeEEECCCC
Confidence 5666788876321 0 12468888888776654 344455555555555443233321222
Q ss_pred --CCCHHHHHHHHHHh-CCCEEEEEcCCCc
Q 013518 166 --GHDTSKIVDSIQDR-GINQVYIIGGDGT 192 (441)
Q Consensus 166 --~~~~~~i~~~l~~~-~Id~LvvIGGdgs 192 (441)
.-|++++++.+.++ +.+-++++|+.|.
T Consensus 71 KD~TD~e~Al~~a~~~~~~~~I~i~Ga~GG 100 (218)
T 3ihk_A 71 KNDTDTELALKTIFDCFGRVEIIVFGAFGG 100 (218)
T ss_dssp CSSCHHHHHHHHHHHHTSSCEEEEESCSSS
T ss_pred CCCCHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 24689999888876 7999999999998
No 123
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=21.36 E-value=5e+02 Score=24.17 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHhCCCEEEEEcCC
Q 013518 168 DTSKIVDSIQDRGINQVYIIGGD 190 (441)
Q Consensus 168 ~~~~i~~~l~~~~Id~LvvIGGd 190 (441)
+.++.++.|.+.++|++|++|..
T Consensus 50 ~~~~~l~~l~~~~~dgIi~~~~~ 72 (318)
T 2fqx_A 50 EYVPSLSAFADENMGLVVACGSF 72 (318)
T ss_dssp GHHHHHHHHHHTTCSEEEEESTT
T ss_pred HHHHHHHHHHHcCCCEEEECChh
Confidence 45577888999999999998743
No 124
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=21.16 E-value=2.1e+02 Score=28.26 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhhHHHHHHHHHHHHHHhhhcCCceEEEEEecCCCc--cHH
Q 013518 193 QKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYC--GFI 270 (441)
Q Consensus 193 ~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdTA~~~~~~~i~~i~~~a~s~~~rv~iVEvMGr~~--G~L 270 (441)
-..|..|.++++++|+++.++.|+ |+.. .=.|.-++...++.+...-.........++|-=|=|-.+ +|+
T Consensus 106 ~l~AeiLke~l~~~G~~v~~~~V~-----gL~~---~~~F~~GL~nLv~~v~~~i~~~~~~g~~v~~N~TGGfKaei~yl 177 (324)
T 3qyf_A 106 QLAGEVIRDYLIEEGIRSELVTVK-----TISS---EENFYEGIVDLFDKVIYRILKFKEQDNEVYINATPGLKPESIFL 177 (324)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEC-----CCCS---HHHHHHHHHHHHHHTHHHHHHHHHTTCEEEEECSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeeEEEEcC-----CCCc---hHHHHHHHHHHHHHHHHHHHhhccCCceEEEEcCCCcchHHHHH
Confidence 445677778887778664444443 2221 224666666666655443333332234566666666665 777
Q ss_pred HHHHhhccCCCC-EEEcCCC
Q 013518 271 AMYATLGSRDVD-CCLIPES 289 (441)
Q Consensus 271 A~~~aLA~~~ad-~iliPE~ 289 (441)
++.+.+. +++ .+|+-|.
T Consensus 178 ~l~g~l~--Ga~~v~Yi~E~ 195 (324)
T 3qyf_A 178 TLAGLLA--GADLIYYKYQE 195 (324)
T ss_dssp HHHHHHT--TCCEEEEEETT
T ss_pred HHHHHHc--CCCeEEEEEcC
Confidence 7777777 466 7777666
No 125
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=20.85 E-value=4.6e+02 Score=23.51 Aligned_cols=125 Identities=7% Similarity=0.062 Sum_probs=66.2
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCC-CC
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGG-HD 168 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~-~~ 168 (441)
+..+||++...-..|-...++.++-+.+.+ ++ .++. +..+... ..
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g-~~~~--------------------------------~~~~~~~~~~ 64 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQ-RG-YQLL--------------------------------IACSEDQPDN 64 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHH
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHH-CC-CEEE--------------------------------EEcCCCCHHH
Confidence 345899998766667777788887776643 22 2221 0011111 12
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCC-CCCChhh--HHHHHHHHHHH
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID-KSFGFDT--AVEEAQRAINA 245 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td-~s~GfdT--A~~~~~~~i~~ 245 (441)
..+.++.|...++|++++.+.+.+-. .+.+.+.+.+ +|+|.+ |.+.+..+ .++++|- +...+++ .
T Consensus 65 ~~~~~~~l~~~~vdgii~~~~~~~~~---~~~~~~~~~~--iPvV~~----~~~~~~~~~~~V~~d~~~~~~~a~~---~ 132 (293)
T 2iks_A 65 EMRCIEHLLQRQVDAIIVSTSLPPEH---PFYQRWANDP--FPIVAL----DRALDREHFTSVVGADQDDAEMLAE---E 132 (293)
T ss_dssp HHHHHHHHHHTTCSEEEECCSSCTTC---HHHHTTTTSS--SCEEEE----ESCCCTTTCEEEEECHHHHHHHHHH---H
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCcH---HHHHHHHhCC--CCEEEE----CCccCcCCCCEEEecCHHHHHHHHH---H
Confidence 34567888889999999998765431 1223332334 567765 33333211 2455543 3333333 3
Q ss_pred HHHhhhcCCceEEEEEec
Q 013518 246 AHVEAESIENGIGVVKLM 263 (441)
Q Consensus 246 i~~~a~s~~~rv~iVEvM 263 (441)
+.. .. +++|.++--.
T Consensus 133 L~~--~G-~~~I~~i~~~ 147 (293)
T 2iks_A 133 LRK--FP-AETVLYLGAL 147 (293)
T ss_dssp HHT--SC-CSSEEEEEEC
T ss_pred HHH--CC-CCEEEEEecC
Confidence 322 24 4568777543
No 126
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=20.71 E-value=5e+02 Score=23.96 Aligned_cols=122 Identities=9% Similarity=0.119 Sum_probs=65.0
Q ss_pred CeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccC-CCCH
Q 013518 91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG-GHDT 169 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~-~~~~ 169 (441)
..+||++...-..|-...++.++-+.+.+ ++ .++. +..+.. .+..
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~--------------------------------~~~~~~~~~~~ 103 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCFQ-KG-YTLI--------------------------------LGNAWNNLEKQ 103 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHHH-TT-CEEE--------------------------------EEECTTCHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cC-CEEE--------------------------------EEeCCCCHHHH
Confidence 45899998765667677778887776643 22 2221 000111 1123
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCC--CCCChh--hHHHHHHHHHHH
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVID--KSFGFD--TAVEEAQRAINA 245 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td--~s~Gfd--TA~~~~~~~i~~ 245 (441)
.+.++.|...++|++++.+.+.+-.. .+.+.+. ..+|+|.+ |++.+..+ .++++| .+...+++.+
T Consensus 104 ~~~~~~l~~~~vdgiI~~~~~~~~~~----~~~l~~~-~~iPvV~~----~~~~~~~~~~~~V~~D~~~~~~~a~~~L-- 172 (340)
T 1qpz_A 104 RAYLSMMAQKRVDGLLVMCSEYPEPL----LAMLEEY-RHIPMVVM----DWGEAKADFTDAVIDNAFEGGYMAGRYL-- 172 (340)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCHHH----HHHHHTT-TTSCEEEE----EESSCCCSSSEEEECCHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCCCEEEEeCCCCChHH----HHHHHhh-CCCCEEEE----ecccCCCCCCCEEEECHHHHHHHHHHHH--
Confidence 45678888899999999987754321 2222221 23567765 33333222 255555 2333333333
Q ss_pred HHHhhhcCCceEEEEE
Q 013518 246 AHVEAESIENGIGVVK 261 (441)
Q Consensus 246 i~~~a~s~~~rv~iVE 261 (441)
.. ..+ ++|.++-
T Consensus 173 -~~--~G~-~~I~~i~ 184 (340)
T 1qpz_A 173 -IE--RGH-REIGVIP 184 (340)
T ss_dssp -HH--HTC-CCEEEEC
T ss_pred -HH--CCC-CEEEEEe
Confidence 22 244 5687773
No 127
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=20.56 E-value=2.3e+02 Score=25.37 Aligned_cols=123 Identities=7% Similarity=-0.052 Sum_probs=64.4
Q ss_pred CCeeEEEEcc-CCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCC
Q 013518 90 DEVHACIVTC-GGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168 (441)
Q Consensus 90 ~~~~iaIl~s-GG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~ 168 (441)
+..+|||+.. .-.-|-...++.++-+.+.+ ++. ++.-+. +......
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g~-~~~~~~-------------------------------~~~~~~~ 56 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAK-QNY-NYNVVI-------------------------------CPYKTDC 56 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHH-TTT-CSEEEE-------------------------------EEECTTC
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHH-cCC-eEEEEe-------------------------------cCCCchh
Confidence 4458999986 55677788888888877753 222 221100 0000112
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCchHHHHHHHHHHHHcCCCceEEEeeccccCCCCCCCCCCChhh--HHHHHHHHHHHH
Q 013518 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDT--AVEEAQRAINAA 246 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~~td~s~GfdT--A~~~~~~~i~~i 246 (441)
..++++.|...++|++++.+-+.+. ..+.+ .....+|+|.+ |++.+.. .++++|- +...+++.+
T Consensus 57 ~~~~~~~l~~~~vdgiIi~~~~~~~---~~~~~---~~~~~iPvV~~----~~~~~~~-~~V~~D~~~~~~~a~~~L--- 122 (289)
T 3g85_A 57 LHLEKGISKENSFDAAIIANISNYD---LEYLN---KASLTLPIILF----NRLSNKY-SSVNVDNYKMGEKASLLF--- 122 (289)
T ss_dssp GGGCGGGSTTTCCSEEEESSCCHHH---HHHHH---HCCCSSCEEEE----SCCCSSS-EEEEECHHHHHHHHHHHH---
T ss_pred HHHHHHHHhccCCCEEEEecCCccc---HHHHH---hccCCCCEEEE----CCCCCCC-CEEEeCHHHHHHHHHHHH---
Confidence 2334555677899999998876443 22222 12345677755 4444432 2455443 333333333
Q ss_pred HHhhhcCCceEEEEEe
Q 013518 247 HVEAESIENGIGVVKL 262 (441)
Q Consensus 247 ~~~a~s~~~rv~iVEv 262 (441)
.. .. ++++.++--
T Consensus 123 ~~--~G-~~~i~~i~~ 135 (289)
T 3g85_A 123 AK--KR-YKSAAAILT 135 (289)
T ss_dssp HH--TT-CCBCEEEEC
T ss_pred HH--cC-CCEEEEEeC
Confidence 22 24 356777753
No 128
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=20.21 E-value=4.2e+02 Score=24.49 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=45.8
Q ss_pred CCCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCC
Q 013518 89 SDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168 (441)
Q Consensus 89 ~~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~ 168 (441)
.+..||||++.- .-|.++++-.++...+.+ .+ | .++.-+++. +.+..|. ...
T Consensus 6 ~~~~~igi~q~~-~hp~ld~~~~G~~~~L~~-~G----------~---~~g~nv~~~------~~~a~gd-------~~~ 57 (302)
T 3lkv_A 6 AKTAKVAVSQIV-EHPALDATRQGLLDGLKA-KG----------Y---EEGKNLEFD------YKTAQGN-------PAI 57 (302)
T ss_dssp -CCEEEEEEESC-CCHHHHHHHHHHHHHHHH-TT----------C---CBTTTEEEE------EEECTTC-------HHH
T ss_pred cCCceEEEEEee-cChhHHHHHHHHHHHHHh-hC----------c---ccCCcEEEE------EEeCCCC-------HHH
Confidence 566899999873 679999999999888854 22 1 122212221 1111110 112
Q ss_pred HHHHHHHHHHhCCCEEEEEcC
Q 013518 169 TSKIVDSIQDRGINQVYIIGG 189 (441)
Q Consensus 169 ~~~i~~~l~~~~Id~LvvIGG 189 (441)
...+++.|...++|.++.||-
T Consensus 58 ~~~~~~~l~~~~~DlIiai~t 78 (302)
T 3lkv_A 58 AVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp HHHHHHHHHTTCCSEEEEESH
T ss_pred HHHHHHHHHhcCCcEEEEcCC
Confidence 567889999999998888763
No 129
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.16 E-value=2.7e+02 Score=23.89 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=48.8
Q ss_pred CCeeEEEEccCCCCcchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhh-hhccccccccccccccC-C-
Q 013518 90 DEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKV-VNDIHKRGGTILGTSRG-G- 166 (441)
Q Consensus 90 ~~~~iaIl~sGG~apGmNa~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~-v~~~~~~GGs~LGssR~-~- 166 (441)
.+.||.+.+.||+.--+..-+-+.. + +. .|.+|+ |.|.. .+.++ ++......-.++|.|-. .
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~--l-~~-~G~eVi-----~lG~~------~p~e~lv~aa~~~~~diV~lS~~~~~ 81 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARA--L-RD-AGFEVV-----YTGLR------QTPEQVAMAAVQEDVDVIGVSILNGA 81 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHH--H-HH-TTCEEE-----CCCSB------CCHHHHHHHHHHTTCSEEEEEESSSC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHH--H-HH-CCCEEE-----ECCCC------CCHHHHHHHHHhcCCCEEEEEeechh
Confidence 3458999999999765554443332 2 22 334554 22221 34333 33333344445554432 1
Q ss_pred --CCHHHHHHHHHHhCC-CEEEEEcCCCc
Q 013518 167 --HDTSKIVDSIQDRGI-NQVYIIGGDGT 192 (441)
Q Consensus 167 --~~~~~i~~~l~~~~I-d~LvvIGGdgs 192 (441)
....++++.|++.+. +..+++||.-.
T Consensus 82 ~~~~~~~~i~~L~~~g~~~i~v~vGG~~~ 110 (161)
T 2yxb_A 82 HLHLMKRLMAKLRELGADDIPVVLGGTIP 110 (161)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCEEEEECCC
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 346777888888876 67788888643
No 130
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=20.10 E-value=2e+02 Score=26.22 Aligned_cols=69 Identities=17% Similarity=0.056 Sum_probs=44.9
Q ss_pred CeeEEEEccCCCCcchh-HHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeeCChhhhhccccccccccccccCCCCH
Q 013518 91 EVHACIVTCGGLCPGLN-TVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDT 169 (441)
Q Consensus 91 ~~~iaIl~sGG~apGmN-a~Ir~~v~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~~~ 169 (441)
..+||++...-.-|-.. .+++++.+.+.+ ++ .++.-+. +.......
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g-~~~~~~~-------------------------------~~~~~~~~ 59 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANA-NG-KTILIAN-------------------------------TGGSSERE 59 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHH-TT-CEEEEEE-------------------------------CTTCHHHH
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHHH-CC-CEEEEEe-------------------------------CCCChHHH
Confidence 45899998776667777 888888877753 33 2332110 00011223
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCc
Q 013518 170 SKIVDSIQDRGINQVYIIGGDGT 192 (441)
Q Consensus 170 ~~i~~~l~~~~Id~LvvIGGdgs 192 (441)
.+.++.|...++|++++.+.+..
T Consensus 60 ~~~~~~l~~~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 60 VEIWKMFQSHRIDGVLYVTMYRR 82 (301)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEecCCcc
Confidence 56788899999999999987644
Done!