RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013518
(441 letters)
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 527 bits (1360), Expect = 0.0
Identities = 155/454 (34%), Positives = 232/454 (51%), Gaps = 43/454 (9%)
Query: 1 MGHSGNLQLKVVNGDAGYVLEDVPHLTDYIPDLP--TYPNPLQFNAAYSVVKQYFVNVDD 58
+ + K+V +L V + LP YPNP + ++ F + D
Sbjct: 3 VESRSRVTSKLVKAH-RAMLNSVTQEDLKVDRLPGADYPNPSKKYSSR----TEFRDKTD 57
Query: 59 TVSQKIVV-------HKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIR 111
+ + S A R +++F E IVTCGG+CPGLN VIR
Sbjct: 58 YIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIR 117
Query: 112 EIVCGLYHMYGVSKILGIDGGYRGFY---SKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168
I ++Y V +++G GY G S+ I L V +IH GGTILG+SRG D
Sbjct: 118 SITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQD 177
Query: 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDK 228
++VD+++ G+N ++ +GGDGTQ+GA VI +E ++RG+ ++V G+PKTIDND+ +
Sbjct: 178 PKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHR 237
Query: 229 SFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPE 288
+FGF TAVE+A +AI AA+ EA S G+GVVKLMGR GFIA A + S + CL+PE
Sbjct: 238 TFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPE 297
Query: 289 SPFYLE------------------------GEESLQSMNQQDASGNKLLQDVGLWISHKI 324
+P + G++ + DASGNK L D+G+ ++ K+
Sbjct: 298 NPISEQEVMSLLERRFCHSRSCVIIVAEGFGQDWGRGSGGYDASGNKKLIDIGVILTEKV 357
Query: 325 KDHFARLH--KMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGP 382
K +KYIDP+YMIRA P +A+D ++C LA AVH A+AG TG +
Sbjct: 358 KAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAM 417
Query: 383 VNGRHAYIPFNRINERQNQVVITDRMWARVLSST 416
+ + +P + + + ++W +V T
Sbjct: 418 RHNNYILVPIKVATSVRRVLDLRGQLWRQVREIT 451
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 274 bits (702), Expect = 8e-87
Identities = 72/286 (25%), Positives = 116/286 (40%), Gaps = 35/286 (12%)
Query: 28 DYIPDLPT------------YPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRGTH 75
YIP LP Y + +K++F N T I+ +
Sbjct: 12 KYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKN---TYGLPIISFTEGESSLS 68
Query: 76 FRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRG 135
F S ++ I+ GG PG + VI + + SK+ G GG G
Sbjct: 69 F------------SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLG 116
Query: 136 FYSKNTINLTPKVVNDIHKRGGTILGTSRGGH-----DTSKIVDSIQDRGINQVYIIGGD 190
+ I LT ++N GG + +S +K + ++ +N + IIGGD
Sbjct: 117 LLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGD 176
Query: 191 GTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDI--PVIDKSFGFDTAVEEAQRAINAAHV 248
+ AA++ E ++ G + V G+PKTID D+ I+ SFGFD+A + I
Sbjct: 177 DSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCR 236
Query: 249 EAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLE 294
+A S + VKLMGR +A+ L + + C++ E +
Sbjct: 237 DAMSTKKYWHFVKLMGRSASHVALECALKTHP-NICIVSEEVLAKK 281
Score = 59.1 bits (143), Expect = 1e-09
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 296 EESLQSMNQQDASGNKLLQDVGL--WISHKIKDHFARLHKMAINLKYIDP-----TYMIR 348
E ++S+ ++D GN + V I+ + K P Y R
Sbjct: 372 FELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGR 431
Query: 349 AIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPF 392
+ + D+ YC L +AV + G TG+ N +
Sbjct: 432 SAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDW 475
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 175 bits (446), Expect = 2e-51
Identities = 96/327 (29%), Positives = 143/327 (43%), Gaps = 46/327 (14%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N +R +V +YH V ++ GI GY G S L V DI
Sbjct: 6 VLTSGGDSPGMNAAVRAVVRKAIYH--DV-EVYGIYNGYAGLISGKIEKLELGSVGDIIH 62
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGT L T+R + K + +++ GI + +IGGDG+ GA + E G
Sbjct: 63 RGGTKLYTARCPEFKTVEGREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEH----GFP 118
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDIP D + GFDTA+ AI+ A S E V+++MGR+ G
Sbjct: 119 CV--GVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTATSHER-TYVIEVMGRHAGD 175
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEESLQSMNQQDASGNKLL-------QDVGLWISH 322
IA++A L + LIPE+ + + E + + + G K G+
Sbjct: 176 IALWAGLAG-GAESILIPEADYDM--HEIIARLKRGHERGKKHSIIIVAEGVGSGVEFGK 232
Query: 323 KIKDHF---ARLHKMAINLKYI----DPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGY 375
+I++ R L +I P+ A+D V + L AV + G
Sbjct: 233 RIEEETNLETR----VSVLGHIQRGGSPS---------AADRVLASRLGAYAVELLLEGK 279
Query: 376 TGFTVGPVNGRHAYIPFNRINERQNQV 402
G VG N + I E ++ V
Sbjct: 280 GGRCVGIQNNKLVDHDIIEILETKHTV 306
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 173 bits (442), Expect = 6e-51
Identities = 88/318 (27%), Positives = 139/318 (43%), Gaps = 46/318 (14%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++T GG PG+N IR +V L G+ +++GI GY G Y + L V+D+
Sbjct: 7 VLTSGGDAPGMNAAIRGVVRSALTE--GL-EVMGIYDGYLGLYEDRMVQLDRYSVSDMIN 63
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
RGGT LG++R +++++ RGI+ + +IGGDG+ GA + E G
Sbjct: 64 RGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM----GFP 119
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDI D + GF TA+ AI+ + S + I VV++MGRYCG
Sbjct: 120 CI--GLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQR-ISVVEVMGRYCGD 176
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEESLQSMNQQDASGNKLL-------QDVGLWISH 322
+ + A + + ++PE F E+ + + A G K ++H
Sbjct: 177 LTLAAAIAG-GCEFVVVPEVEFSR--EDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAH 233
Query: 323 KIKDHF---ARLHKMAINLKYI----DPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGY 375
I+ R A L +I P D + + + A+ +AGY
Sbjct: 234 FIEKETGRETR----ATVLGHIQRGGSPV---------PYDRILASRMGAYAIDLLLAGY 280
Query: 376 TGFTVGPVNGRHAYIPFN 393
G VG N + +
Sbjct: 281 GGRCVGIQNEQLVHHDII 298
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 172 bits (439), Expect = 2e-50
Identities = 89/335 (26%), Positives = 138/335 (41%), Gaps = 38/335 (11%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
I+T GG PG+N +R + + + G+ ++ GI G+ G + + L + V +
Sbjct: 6 ILTSGGDAPGMNAAVRAVTRVAIAN--GL-EVFGIRYGFAGLVAGDIFPLESEDVAHLIN 62
Query: 155 RGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLK 209
GT L ++R ++ ++ GI+ V +IGGDG+ GA + G
Sbjct: 63 VSGTFLYSARYPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRH----GFN 118
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
G+P TIDNDIP D + G+DTA A AI+ A S + +V +MGR CG
Sbjct: 119 SI--GLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASSHHR-VFIVNVMGRNCGD 175
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEGEESLQSMNQQDASGNKLLQDV---GLWISHKIKD 326
IAM + D +IPE P+ + EE + Q SG V G+ + +
Sbjct: 176 IAMRVGVAC-GADAIVIPERPYDV--EEIANRLKQAQESGKDHGLVVVAEGVMTADQFMA 232
Query: 327 HFARLHKM---AINLKYI----DPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFT 379
+ A L ++ PT SD V + L AVH + G G
Sbjct: 233 ELKKYGDFDVRANVLGHMQRGGTPT---------VSDRVLASKLGSEAVHLLLEGKGGLA 283
Query: 380 VGPVNGRHAYIPFNRINERQNQVVITDRMWARVLS 414
VG NG+ + + ++ LS
Sbjct: 284 VGIENGKVTSHDILDLFDESHRGDYDLLKLNADLS 318
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 170 bits (433), Expect = 1e-46
Identities = 64/336 (19%), Positives = 111/336 (33%), Gaps = 30/336 (8%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTIN-LTPKVVNDIH 153
IV G G+N+ + + + G + I G+ G ++ L K +
Sbjct: 398 IVNVGAPAGGINSAVYSMATYCMSQ--GH-RPYAIYNGWSGLARHESVRSLNWKDMLGWQ 454
Query: 154 KRGGTILGTSRG---GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQ-RGLK 209
RGG+ +GT+R D I Q + + I+GG + + +
Sbjct: 455 SRGGSEIGTNRVTPEEADLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFR 514
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
+ + IP T+ N++P + S G DTA+ + A S VV G G+
Sbjct: 515 IPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGNSGY 574
Query: 270 IAMYATLGSRDVDCCLIPESPFYLEG-----EESLQSMNQQDASGNKLL------QDVGL 318
+A YA+L +PE LE E QS + + G
Sbjct: 575 LATYASLAV-GAQVSYVPEEGISLEQLSEDIEYLAQSFEKAEGRGRFGKLILKSTNASKA 633
Query: 319 WISHKIKDHFARLHKMAINLKYIDPTYMIR-AIPSNASDNVYCTLLAQSAVHGAVAGYTG 377
+ K+ + + K P ++ + +PS D T +A AV
Sbjct: 634 LSATKLAEVITAEADGRFDAKPAYPGHVQQGGLPS-PIDRTRATRMAIKAVGFIKDNQAA 692
Query: 378 FTVGPVNGRHAYIPFNRINE-------RQNQVVITD 406
+ I++ + + VV
Sbjct: 693 IAEARAAEENFNADDKTISDTAAVVGVKGSHVVYNS 728
Score = 145 bits (369), Expect = 5e-38
Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 31/222 (13%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTIN---LTPKVVND 151
++T GG PG+N+ +R IV ++ G + + GY G + V
Sbjct: 8 VMTSGGDAPGMNSNVRAIVRSAIFK--GC-RAFVVMEGYEGLVRGGPEYIKEFHWEDVRG 64
Query: 152 IHKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE---- 202
GGT +GT+R + + G++ + + GGDG+ GA + E
Sbjct: 65 WSAEGGTNIGTARCMEFKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSL 124
Query: 203 -------------IRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 249
+R + + G +IDND+ D + G +A++ +AI+
Sbjct: 125 IEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALDRICKAIDYVEAT 184
Query: 250 AESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPF 291
A S VV++MGR CG++A+ A + + D IPE P
Sbjct: 185 ANSHSR-AFVVEVMGRNCGWLALLAGIAT-SADYIFIPEKPA 224
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 787
Score = 166 bits (422), Expect = 5e-45
Identities = 45/204 (22%), Positives = 77/204 (37%), Gaps = 9/204 (4%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFY-SKNTINLTPKVVNDIH 153
IV G LN R L H + K I G+ G + L+ V + H
Sbjct: 398 IVHVGAPSAALNAATRAATLYCLSHGH---KPYAIMNGFSGLIQTGEVKELSWIDVENWH 454
Query: 154 KRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-IRQRGLKV 210
GG+ +GT+R D I Q ++ + I+GG + + + + +
Sbjct: 455 NLGGSEIGTNRSVASEDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNI 514
Query: 211 AVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFI 270
+ IP T+ N++P + S G DT + + A + + V ++ G + G+I
Sbjct: 515 PMCLIPATVSNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATRRRVFVCEVQGGHSGYI 574
Query: 271 AMYATLGSRDVDCCLIPESPFYLE 294
A + L + PE L
Sbjct: 575 ASFTGLIT-GAVSVYTPEKKIDLA 597
Score = 148 bits (376), Expect = 6e-39
Identities = 53/227 (23%), Positives = 97/227 (42%), Gaps = 30/227 (13%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNT--INLTPKVVNDI 152
++T GG PG+N +R +V G++ G + + GY G + + V
Sbjct: 10 VMTSGGDSPGMNAAVRAVVRTGIHF--GC-DVFAVYEGYEGLLRGGKYLKKMAWEDVRGW 66
Query: 153 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI---- 203
GGT++GT+R + ++ +GI+ + + GGDG+ GA + E
Sbjct: 67 LSEGGTLIGTARSMEFRKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLV 126
Query: 204 -------------RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEA 250
+++ G+ +IDND+ D + G +A+E ++ A
Sbjct: 127 DELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDATA 186
Query: 251 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEE 297
+S VV++MGR+CG++A+ A + + D IPE +
Sbjct: 187 KSHSR-AFVVEVMGRHCGWLALMAGIAT-GADYIFIPERAVPHGKWQ 231
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 166 bits (423), Expect = 5e-45
Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 10/222 (4%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTI-NLTPKVVNDIH 153
I+ G LN R L G ++ I G+ G + L V D H
Sbjct: 603 IIHVGAPTSALNPATRVATLNSLAK--GH-RVFAIRNGFAGLIRHGAVRELNWIDVEDWH 659
Query: 154 KRGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-IRQRGLKV 210
GG+ +GT+R D + Q + + IIGG + + +
Sbjct: 660 NTGGSEIGTNRSLPSDDMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNI 719
Query: 211 AVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFI 270
+ +P T+ N++P + S G DT + +A A + VV++ G Y G++
Sbjct: 720 PMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAVKQSASASRRRTFVVEVQGGYSGYL 779
Query: 271 AMYATLGSRDVDCCLIPESPFYLEG-EESLQSMNQQDASGNK 311
A YA L + PE+P L+ +E ++ + + +
Sbjct: 780 ASYAGLIT-GALAVYTPENPINLQTVQEDIELLTRTYEEDDG 820
Score = 148 bits (374), Expect = 1e-38
Identities = 55/244 (22%), Positives = 102/244 (41%), Gaps = 32/244 (13%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNT--INLTPKVVNDI 152
I+T GG PG+N +R + G+++ G K+ GY G L + V +
Sbjct: 215 IITSGGDAPGMNAAVRAVTRAGIFY--GC-KVYACYEGYTGLVKGGDMLKELQWQDVRGL 271
Query: 153 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI---- 203
GGTI+GT+R + ++ GI+ + + GGDG+ GA + +E
Sbjct: 272 LSIGGTIIGTARCKEFRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELI 331
Query: 204 -------------RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEA 250
+ + + G+ +IDND+ D + G +++E ++ A
Sbjct: 332 KELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLERIIELVDYIDATA 391
Query: 251 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG--EESLQSMNQQDAS 308
S VV++MGR+CG++ + + + + D IPE P ++ + +
Sbjct: 392 ASHSR-AFVVEVMGRHCGWLGLMSGIAT-GADYIFIPERPPSESNWKDDLKKVCLRHREK 449
Query: 309 GNKL 312
G +
Sbjct: 450 GRRK 453
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 165 bits (419), Expect = 1e-44
Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 9/221 (4%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
++ G G+N +R V GL G ++L + G+ G V
Sbjct: 405 VMNVGAPAAGMNAAVRSTVRIGLIQ--GN-RVLVVHDGFEGPAKGQIEEAGWSYVGGWTG 461
Query: 155 RGGTILGTSRG--GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRG-LKVA 211
+GG+ LG+ R +I +I I + IIGG G + E +Q L +
Sbjct: 462 QGGSKLGSKRTLPKKSFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIP 521
Query: 212 VAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIA 271
IP T+ N++P D S G DTA+ + A + + +++ MG YCG++A
Sbjct: 522 FVVIPATVSNNVPGSDFSVGADTALNTICTTCDRIKQSAAGTKRRVFIIETMGGYCGYLA 581
Query: 272 MYATLGSRDVDCCLIPESPFYLEG-EESLQSMNQQDASGNK 311
A L + D I E PF + + +++ + Q+ + K
Sbjct: 582 TMAGLAA-GADAAYIFEEPFTIRDLQANVEHLVQKMKTTVK 621
Score = 152 bits (387), Expect = 2e-40
Identities = 60/243 (24%), Positives = 112/243 (46%), Gaps = 31/243 (12%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFY--SKNTINLTPKVVNDI 152
++T GG G+N +R +V G++ G ++ + GY+G + T + V+ +
Sbjct: 20 VLTSGGDAQGMNAAVRAVVRVGIFT--GA-RVFFVHEGYQGLVDGGDHIREATWESVSMM 76
Query: 153 HKRGGTILGTSRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI---- 203
+ GGT++G++R + ++ RGI + +IGGDG+ GA E
Sbjct: 77 LQLGGTVIGSARCKDFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLL 136
Query: 204 -------------RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEA 250
R + + G+ +IDND D + G D+A+ ++A A
Sbjct: 137 SDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALHRITEIVDAITTTA 196
Query: 251 ESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEESL-QSMNQQDASG 309
+S + V+++MGR+CG++A+ +L D IPE P E+ L + +++ G
Sbjct: 197 QSHQR-TFVLEVMGRHCGYLALVTSLSC-GADWVFIPECPPDDNWEDHLCRRLSETRTRG 254
Query: 310 NKL 312
++L
Sbjct: 255 SRL 257
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 156 bits (397), Expect = 2e-43
Identities = 61/337 (18%), Positives = 113/337 (33%), Gaps = 60/337 (17%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHK 154
GG+ +N ++ + +I G G +++ I+ + I
Sbjct: 8 YAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQESDAAISA 67
Query: 155 ---RGGTILGTSR--------GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI 203
G+ R + ++++ + I + GG + + +
Sbjct: 68 LRYTPSGAFGSCRYKLKSLEQNRREYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLS 127
Query: 204 RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIE---NGIGVV 260
G + +PKT+DND+P+ D GF + + + A + S+ + V+
Sbjct: 128 GTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKYIAVSTLEASFDVASMSATSTKVFVL 187
Query: 261 KLMGRYCGFIAMYATLGSRD----VDCCLIPESPFYLE---------------------- 294
++MGR+ G+IA L S L PE F +
Sbjct: 188 EVMGRHAGWIAAAGGLASSPEREIPVVILFPEISFDKQKFLAKVDSCVKKFGYCSVVVSE 247
Query: 295 -----GEESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKY--IDPTYMI 347
+ L +DA G+ L V ++ +K+ + LKY Y+
Sbjct: 248 GVKGDDGKFLSDQGVRDAFGHAQLGGVAPVVASMVKEG--------LGLKYHWGVADYLQ 299
Query: 348 RA---IPSNASDNVYCTLLAQSAVHGAVAGYTGFTVG 381
RA I S +D + Q+AV AV G+
Sbjct: 300 RAARHIAS-KTDVEQAYAMGQAAVEFAVQGHNSVMPT 335
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 159 bits (405), Expect = 1e-42
Identities = 42/205 (20%), Positives = 78/205 (38%), Gaps = 10/205 (4%)
Query: 96 IVTCGGLCPGLNTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNTIN-LTPKVVNDIH 153
I+ G G+N+ + + + + I G+ G ++ + +
Sbjct: 576 IINVGAPAGGMNSAVYSMATYCMSRGH---VPYAIHNGFSGLARHESVRSINWLDIEGWG 632
Query: 154 KRGGTILGTSR---GGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEE-IRQRGLK 209
GG+ +GT+R D I + G + + ++GG + I L+
Sbjct: 633 SLGGSEIGTNRTLPNDADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLR 692
Query: 210 VAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGF 269
+ + IP TI N++P + S G DT + + A + N + VV++ G G+
Sbjct: 693 IPLVLIPATISNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNSGY 752
Query: 270 IAMYATLGSRDVDCCLIPESPFYLE 294
IA +A L +PE L
Sbjct: 753 IATHAQLAC-GAQISYVPEEGISLA 776
Score = 151 bits (382), Expect = 1e-39
Identities = 65/294 (22%), Positives = 109/294 (37%), Gaps = 42/294 (14%)
Query: 56 VDDTVSQKIVVHKDSPRGTHFRRAGPRQKVYFVSDEVHAC---------IVTCGGLCPGL 106
+ + + + +K Y D+ ++T GG PG+
Sbjct: 137 LGSLIGFSGFKNPFAVNERSLLPKVSEEKAYRAEDDSEKLLNPVRKTIGVMTSGGDSPGM 196
Query: 107 NTVIREIV-CGLYHMYGVSKILGIDGGYRGFYSKNT---INLTPKVVNDIHKRGGTILGT 162
N +R +V G+Y G K+ I GY G V GGT +GT
Sbjct: 197 NPFVRAVVRAGIYK--GC-KVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGT 253
Query: 163 SRGGHDTS-----KIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI-------------- 203
+R K ++ D GI+ + + GGDG+ GA E
Sbjct: 254 ARCKEFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQIS 313
Query: 204 ---RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVV 260
+ + G +IDND+ D + G ++++ RAI+ A S +V
Sbjct: 314 QQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSSLDRICRAIDYIDATANSHSR-AFIV 372
Query: 261 KLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEG--EESLQSMNQQDASGNKL 312
++MGR+CG++ + A L + D LIPE P ++ + + A G +
Sbjct: 373 EVMGRHCGWLGLLAGLAT-SADYILIPEKPASSREWQDQMCDIVGKHRARGKRK 425
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 4e-06
Identities = 49/288 (17%), Positives = 86/288 (29%), Gaps = 98/288 (34%)
Query: 145 TPKVVNDIHKRG----GTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIY 200
T K D+ R G S I+D + + +N GG+ ++
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFS--------ILDIVINNPVNLTIHFGGEKGKR------ 1683
Query: 201 EEIRQRGLKVAVAGIP------KTIDNDIPVIDKSFGFDTAVEE------AQRAINAAHV 248
IR+ + I + I +I S+ F + Q A+
Sbjct: 1684 --IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 249 EAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFY----LEGEES-L---- 299
A + L S+ LIP + L GE + L
Sbjct: 1742 ----------------------AAFEDLKSKG----LIPADATFAGHSL-GEYAALASLA 1774
Query: 300 QSMNQQDASGNKLLQDVGLWISHKI-KDHFARLHK--MAINLKYIDPTYMIRAIPSNASD 356
M+ + +++ G+ + + +D R + +AIN P + + A
Sbjct: 1775 DVMSIESLV--EVVFYRGMTMQVAVPRDELGRSNYGMIAIN-----PGRVAASFSQEALQ 1827
Query: 357 NVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVI 404
V + + TG+ V VN +N N+ Q V
Sbjct: 1828 YV-VERVGKR---------TGWLVEIVN-------YNVENQ---QYVA 1855
Score = 38.9 bits (90), Expect = 0.004
Identities = 66/443 (14%), Positives = 115/443 (25%), Gaps = 162/443 (36%)
Query: 37 PNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRG-----THFRRAGPRQKVYFVSDE 91
P F A S +++ F + ++ D P F + +VS
Sbjct: 23 PTASFFIA--SQLQEQFNKILPEPTEGFAAD-DEPTTPAELVGKF--------LGYVSSL 71
Query: 92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVND 151
V G LN + E + L G ND
Sbjct: 72 VEP--SKVGQFDQVLNLCLTEFE---------NCYL------EG--------------ND 100
Query: 152 IHKRGGTILGTSRGG------------------------HDTSKIVDSIQDRGINQVYII 187
IH +L + S + ++ + G Q+ I
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE-GNAQLVAI 159
Query: 188 -GGDGTQKGAAVIY-EEIRQ---------RGLKVAVAGIPKTIDNDIPVIDKSF--GFD- 233
GG Q G Y EE+R L A + +K F G +
Sbjct: 160 FGG---Q-GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 234 -TAVEEAQRA-----INAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGS-----RDVD 282
+E + + + S IGV++L ++ LG R
Sbjct: 216 LEWLENPSNTPDKDYLLSIPI---SC-PLIGVIQL----AHYVVTAKLLGFTPGELRSYL 267
Query: 283 CCLIPE-----SPFYLEGEESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAIN 337
+ + +S +S +L +I R ++
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL----FFIG-------VRCYE---- 312
Query: 338 LKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHG--------AVAGYTGFTVGP----VN- 384
Y ++P ++L S + +++ T V N
Sbjct: 313 ------AYPNTSLPP--------SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 385 ----GRHAYIPFNRINERQNQVV 403
G+ I + +N +N VV
Sbjct: 359 HLPAGKQVEI--SLVNGAKNLVV 379
Score = 38.9 bits (90), Expect = 0.004
Identities = 43/225 (19%), Positives = 72/225 (32%), Gaps = 71/225 (31%)
Query: 55 NVDDTVSQKIV--VHKDSPRGTHFRRA---GPRQKVYFVSDEVHACIVTCGG----LCPG 105
N+ Q V + P G + G + V V+ G L G
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN---LV--------VS--GPPQSLY-G 388
Query: 106 LNTVIREIVC--GLYHMYGVSKILG----IDGGYRG------FYSKNTINLTPKVVNDIH 153
LN +R+ GL S+I + R F+S + + + D+
Sbjct: 389 LNLTLRKAKAPSGL----DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 154 KRGGTILGTS--------RGGHDTSKIVDSIQDRGINQV----------------YIIG- 188
K + G D + SI +R ++ + +I+
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Query: 189 GDGTQKGAAVIYEEIRQ-RGLKVAVAGIPKTIDNDIPVIDKSFGF 232
G G G V+ + G++V VAG T+D + D +GF
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIVAG---TLDIN---PDDDYGF 543
Score = 34.3 bits (78), Expect = 0.10
Identities = 38/259 (14%), Positives = 69/259 (26%), Gaps = 102/259 (39%)
Query: 232 FDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMY---ATLGSRDVDCCLIPE 288
F+ + E AA E + +L+G++ G+++ + +G D L
Sbjct: 37 FNKILPEPTEGF-AADDEPTT------PAELVGKFLGYVSSLVEPSKVGQFDQ--VL--- 84
Query: 289 SPFYLEGEESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPT---- 344
L GN D+ H +A L + T
Sbjct: 85 -------NLCLTEFENCYLEGN----DI---------------HALAAKLLQENDTTLVK 118
Query: 345 --------YMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG----------- 385
R + D + L ++ G F G
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-----GGQGNTDDYFEEL 173
Query: 386 R---HAYIPF---------NRINERQNQVVITDRMWARVL-------SSTNQPS---FLS 423
R Y ++E + ++++ + L + +N P LS
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 424 ANELAKFKREKP-SCPVVG 441
P SCP++G
Sbjct: 234 I----------PISCPLIG 242
Score = 30.4 bits (68), Expect = 1.6
Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 37/78 (47%)
Query: 147 KVVNDIHKRGGTI--------LGTSRGG---------------HDTSKIVDSIQDRG--- 180
+VV RG T+ LG S G +V+ + R
Sbjct: 1784 EVV---FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 181 --I------NQVYIIGGD 190
I NQ Y+ GD
Sbjct: 1841 VEIVNYNVENQQYVAAGD 1858
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 53/511 (10%), Positives = 133/511 (26%), Gaps = 153/511 (29%)
Query: 11 VVNGDAGYVLEDVPHLTDYIPDLPT-----YPNPLQFNAAYSVVKQYFVNVDDTV----- 60
V+ + +++ + P + T + L +N V +Y V+
Sbjct: 86 VLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRL-YNDN-QVFAKYNVSRLQPYLKLRQ 142
Query: 61 -------SQKIVVH---------------KDSPRGTHFRRAGPRQKVYFVSDEVHACIVT 98
++ +++ K+++++
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-----KIFWLN--------- 188
Query: 99 CGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINL-------------- 144
C TV+ E++ L + + D ++I
Sbjct: 189 -LKNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 145 --------TPKVVN--DIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIG-GDGTQ 193
K N ++ + IL T+R + D + + +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCK---ILLTTR---FKQ-VTDFLSAATTTHISLDHHSMTLT 299
Query: 194 KGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV--EEAQRAINAAHVEAE 251
+ + + L +P+ + P + N HV +
Sbjct: 300 PDEV---KSLLLKYLDCRPQDLPREVLTTNPRRLSIIA---ESIRDGLATWDNWKHVNCD 353
Query: 252 SIENGIGVVKLMGRYCGFI---------AMYATLG--SRDVDCCLIPESPF-----YLEG 295
+ I + M+ L IP +
Sbjct: 354 KLTTIIES---------SLNVLEPAEYRKMFDRLSVFPPSAH---IPTILLSLIWFDVIK 401
Query: 296 EESLQSMNQ--------QDASGNKL-LQDVGLWISHKIKDHFARLHKMAINLKYIDP-TY 345
+ + +N+ + + + + + L + K+++ +A LH+ ++ Y P T+
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA-LHRSIVD-HYNIPKTF 459
Query: 346 MIRAIPSNASDNVYCTLLAQSAVHGAVAGYTG----FTVGPVNGRHAYIPFNRINERQNQ 401
+ D + + + H + F R ++ F + + +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGH---HLKNIEHPERMTLF-------RMVFLDFRFL---EQK 506
Query: 402 VVITDRMWARVLSSTNQPSFLSANELAKFKR 432
+ W S N + +L +K
Sbjct: 507 IRHDSTAWNASGSILN-----TLQQLKFYKP 532
Score = 42.1 bits (98), Expect = 3e-04
Identities = 49/334 (14%), Positives = 97/334 (29%), Gaps = 78/334 (23%)
Query: 144 LTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKG----AAVI 199
L+ + ++ I + GT R + ++ + V + + + I
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLR-------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 200 YEEIRQRGLKVAVAGIPKTID---NDIPVIDKSFGFDTAV--EEAQRAINAAHVEAESIE 254
E RQ + + + D ND V K V + + A +E
Sbjct: 99 KTEQRQPSMMTRM--YIEQRDRLYNDNQVFAKYN-----VSRLQPYLKLRQALLELRP-A 150
Query: 255 NGIGVVKLMGRYCG--FIAMYATLGSRDVDCCLIPESPFYLE-GE--------ESLQSMN 303
+ + ++G G ++A+ S V C + F+L E LQ +
Sbjct: 151 KNVLIDGVLG--SGKTWVAL-DVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 304 QQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVY---- 359
Q D I +I A L ++ + Y + ++ NV
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-CLLVL-------LNVQNAKA 258
Query: 360 -------CTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARV 412
C +L + + T ++ H + + + +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL---TPDE-----VKSLLLKY 310
Query: 413 LSSTNQ----------PSFLSANELAKFKREKPS 436
L Q P LS +A+ R+ +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSI--IAESIRDGLA 342
>1rwh_A Chondroitin AC lyase; chondroitinase, chondroitin lyase; HET: ASG
GCT GAD; 1.25A {Arthrobacter aurescens} SCOP: a.102.3.2
b.24.1.1 b.30.5.2 PDB: 1rwc_A* 1rwf_A* 1rwg_A* 1rwa_A*
1rw9_A
Length = 757
Score = 29.4 bits (65), Expect = 3.1
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 294 EGEESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAI 336
+ +SL ++ A + D+ L ++ + RL ++A
Sbjct: 43 KAADSLAKLDA-AAGRTSVFTDLSLAKDAEMVTTYTRLSQLAT 84
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA
complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4}
SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Length = 259
Score = 28.8 bits (65), Expect = 3.4
Identities = 5/52 (9%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 197 AVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSF-GFDTAVEEAQRAINAAH 247
+ + + RG+K ++ + + + ++ + ++ + N H
Sbjct: 194 LNLLDSLNDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVFNIYH 245
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 4.4
Identities = 17/144 (11%), Positives = 36/144 (25%), Gaps = 13/144 (9%)
Query: 154 KRGGTILGTSRGGH---DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
K G I G D +GI + + + + R+R L
Sbjct: 1196 KMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVT 1255
Query: 211 AVAGIPKTIDNDIPVIDK---SFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYC 267
A I ++N++ + + E + E+ + G
Sbjct: 1256 REAQIKDWVENELEALKLEAEEIPSEDQNEFL--LERTREIHNEAESQLRAAQQQWGNDF 1313
Query: 268 G-----FIAMYATLGSRDVDCCLI 286
+ L + + +
Sbjct: 1314 YKRDPRIAPLRGALATYGLTIDDL 1337
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 28.4 bits (63), Expect = 5.6
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 233 DTAVEEAQRA--INAAHVEAES 252
D A EE R IN +HVE ++
Sbjct: 335 DNAPEEKARGITINTSHVEYDT 356
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich
domain 2, protein-ADP COM transferase; HET: ADP; 2.30A
{Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Length = 337
Score = 28.1 bits (63), Expect = 6.2
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 146 PKVVNDIHKRGG--TILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGT 192
P + + K G + T + G T + + + GGDGT
Sbjct: 45 PDALIKLEKAGYETSAYATEKIGDAT-LEAERAMHENYDVLIAAGGDGT 92
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 27.5 bits (62), Expect = 8.4
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 46/147 (31%)
Query: 148 VVNDIHKRG--GTILGTSR--------GGHDTSKI---------VDSIQDRGIN------ 182
++++ + G T+ G R G + I + ++++ GI
Sbjct: 270 MMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEEN 329
Query: 183 -QVYIIG-GDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQ 240
++I+ GD + A + +R G+K D + + +++A
Sbjct: 330 LDLFIVTMGDQADRYAVKLLNHLRHNGIKA-----------DKDYLQRKIK--GQMKQAD 376
Query: 241 RAINAAHV----EAESIENGIGVVKLM 263
R + A + E +EN VK M
Sbjct: 377 R-LGAKFTIVIGDQE-LENNKIDVKNM 401
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 27.5 bits (62), Expect = 9.6
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 233 DTAVEEAQRA--INAAHVEAES 252
D A EE R IN AHVE E+
Sbjct: 51 DKAPEERARGITINTAHVEYET 72
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2;
1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A*
2hj9_A*
Length = 342
Score = 27.5 bits (61), Expect = 9.6
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 17/74 (22%)
Query: 173 VDSIQDRGINQVYIIGGDGTQKGAAVIYE------------EIRQRGLKVAVAGI----- 215
VD++ + G + I G G I + + + +
Sbjct: 250 VDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEAIKWDLEDKPV 309
Query: 216 PKTIDNDIPVIDKS 229
P D ++ K+
Sbjct: 310 PTVYSGDFEIVTKA 323
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.414
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,892,790
Number of extensions: 435081
Number of successful extensions: 1146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1066
Number of HSP's successfully gapped: 48
Length of query: 441
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 345
Effective length of database: 4,021,377
Effective search space: 1387375065
Effective search space used: 1387375065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)