RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013518
(441 letters)
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 186 bits (474), Expect = 3e-56
Identities = 80/322 (24%), Positives = 134/322 (41%), Gaps = 18/322 (5%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
++T GG PG+N IR +V + +++GI GY G Y + L V+D+ R
Sbjct: 7 VLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINR 64
Query: 156 GGTILGTSRGGHDTSK-----IVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GGT LG++R + +++++ RGI+ + +IGGDG+ GA + E
Sbjct: 65 GGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFP----- 119
Query: 211 AVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFI 270
G+P TIDNDI D + GF TA+ AI+ + S I VV++MGRYCG +
Sbjct: 120 -CIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS-HQRISVVEVMGRYCGDL 177
Query: 271 AMYATLGSRDVDCCLIPESPFYLEGEESLQSMNQQDASGNKLLQDVGLWISHKIKDHFAR 330
+ A + + + ++PE F E + + ++ HF
Sbjct: 178 TLAAAI-AGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHFIE 236
Query: 331 LHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYI 390
+ + ++ R D + + + A+ +AGY G VG N + +
Sbjct: 237 -KETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHH 295
Query: 391 PFNRINERQNQVVITDRMWARV 412
E + W
Sbjct: 296 DIIDAIENMKRPF--KGDWLDC 315
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 189 bits (480), Expect = 8e-55
Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 8/206 (3%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
I+ GG PG + VI + + SK+ G GG G + I LT ++N
Sbjct: 74 IILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNT 133
Query: 156 GGTILGTSRGGH-----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GG + +S +K + ++ +N + IIGGD + AA++ E ++ G +
Sbjct: 134 GGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENI 193
Query: 211 AVAGIPKTIDNDIP--VIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCG 268
V G+PKTID D+ I+ SFGFD+A + I +A S + VKLMGR
Sbjct: 194 QVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSAS 253
Query: 269 FIAMYATLGSRDVDCCLIPESPFYLE 294
+A+ L + + C++ E +
Sbjct: 254 HVALECALKTHP-NICIVSEEVLAKK 278
Score = 65.5 bits (159), Expect = 4e-12
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
Query: 296 EESLQSMNQQDASGNKLLQDV--GLWISHKIKDHFARLHKMAINLKYIDP-----TYMIR 348
E ++S+ ++D GN + V I+ + K P Y R
Sbjct: 369 FELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGR 428
Query: 349 AIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRI 395
+ + D+ YC L +AV + G TG+ N P + I
Sbjct: 429 SAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLN--LKPTDWI 473
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 181 bits (461), Expect = 2e-54
Identities = 84/326 (25%), Positives = 139/326 (42%), Gaps = 20/326 (6%)
Query: 96 IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
++T GG PG+N IR +V +Y ++ G+ GY G + N L V DI R
Sbjct: 6 VLTSGGDSPGMNAAIRSVV--RKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHR 63
Query: 156 GGTILGTSRGGH-----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
GGTIL T+R K ++ ++ GI + +IGGDG+ +GA + E
Sbjct: 64 GGTILYTARCPEFKTEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEHGFP----- 118
Query: 211 AVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFI 270
G+P TIDNDIP D + GFDTA+ AI+ + + V+++MGR+ G I
Sbjct: 119 -CVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIR-DTATSHERTYVIEVMGRHAGDI 176
Query: 271 AMYATLGSRDVDCCLIPESPFYLEGEESLQSMNQQDASGNKLLQDVGLWISHKIKDHFAR 330
A+++ L + LIPE+ + + + + + ++ V + +
Sbjct: 177 ALWSGLAG-GAETILIPEADYDMNDVIARLKRGHERGKKHSIII-VAEGVGSGVDFGRQI 234
Query: 331 LHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYI 390
+ ++ R A D V + L AV + G G VG N +
Sbjct: 235 QEATGFETRVTVLGHVQRGGSPTAFDRVLASRLGARAVELLLEGKGGRCVGIQNNQLVDH 294
Query: 391 PFNRINERQNQVVITDRMW--ARVLS 414
++ + RM+ ++ LS
Sbjct: 295 DIAEALANKHTI--DQRMYALSKELS 318
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 31.9 bits (71), Expect = 0.15
Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 9/149 (6%)
Query: 146 PKVVNDIHKRGG--TILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEI 203
P + + K G + T + G T + + + GGDGT E
Sbjct: 23 PDALIKLEKAGYETSAYATEKIGDAT-LEAERAMHENYDVLIAAGGDGTLNEVVNGIAEK 81
Query: 204 RQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLM 263
R + IP ND ++ + A I H I +
Sbjct: 82 PNR---PKLGVIPMGTVNDFG---RALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFIN 135
Query: 264 GRYCGFIAMYATLGSRDVDCCLIPESPFY 292
G + + + + P + +
Sbjct: 136 LAAGGQLTQVSYETPSKLKSIVGPFAYYI 164
>d1i5pa1 b.18.1.3 (A:473-633) delta-Endotoxin, C-terminal domain
{Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId:
29339]}
Length = 161
Score = 26.8 bits (59), Expect = 3.3
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 357 NVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIP 391
N+Y + +H A YTGFT+ P++
Sbjct: 1 NIYAANENGTMIHLAPEDYTGFTISPIHATQVNNQ 35
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 91
Score = 25.8 bits (57), Expect = 4.1
Identities = 3/30 (10%), Positives = 15/30 (50%)
Query: 296 EESLQSMNQQDASGNKLLQDVGLWISHKIK 325
++ +++ K L+++ W++ ++
Sbjct: 62 QQECEALLVDFPEQEKELRELSAWMAGAVR 91
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia
coli [TaxId: 562]}
Length = 103
Score = 25.9 bits (57), Expect = 4.1
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 13/91 (14%)
Query: 3 HSGNLQLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSV---------VKQYF 53
SG Q +V G + L + + L V
Sbjct: 6 QSGGKQHRVSEGQ----TVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKA 61
Query: 54 VNVDDTVSQKIVVHKDSPRGTHFRRAGPRQK 84
V +K+ + K R + ++ G RQ
Sbjct: 62 EVVAHGRGEKVKIVKFRRRKHYRKQQGHRQW 92
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
[TaxId: 562]}
Length = 295
Score = 26.9 bits (58), Expect = 4.8
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 162 TSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIP 216
T G + V+ + G+ V GGDGT + + + A+ +P
Sbjct: 36 TWEKGDAA-RYVEEARKFGVATVIAGGGDGTINEVSTALIQ-CEGDDIPALGILP 88
>d2ac0a1 b.2.5.2 (A:96-289) p53 tumor suppressor, DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 26.3 bits (58), Expect = 5.8
Identities = 17/84 (20%), Positives = 24/84 (28%), Gaps = 18/84 (21%)
Query: 30 IPDLPTYPNPLQFNAA-------------YSVVKQY-FVNVDDTVSQKIVVHKDSPRGTH 75
+P TY F YS F + T ++ V P GT
Sbjct: 2 VPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGT- 60
Query: 76 FRRAGPRQKVYFVSDEVHACIVTC 99
RA +Y S + + C
Sbjct: 61 RVRAMA---IYKQSQHMTEVVRRC 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.414
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,664,891
Number of extensions: 79427
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 13
Length of query: 441
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 353
Effective length of database: 1,199,356
Effective search space: 423372668
Effective search space used: 423372668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)