Query 013521
Match_columns 441
No_of_seqs 218 out of 2923
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 12:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei9_A LL-diaminopimelate amin 100.0 9.3E-56 3.2E-60 439.0 40.5 394 46-439 30-423 (432)
2 3qgu_A LL-diaminopimelate amin 100.0 2.6E-53 9E-58 423.5 41.2 395 45-441 42-437 (449)
3 3asa_A LL-diaminopimelate amin 100.0 2.3E-51 7.8E-56 403.4 37.1 380 45-441 6-390 (400)
4 1b5p_A Protein (aspartate amin 100.0 2.1E-50 7.2E-55 394.5 36.6 341 71-441 30-382 (385)
5 3aow_A Putative uncharacterize 100.0 1.5E-49 5.2E-54 395.5 32.4 394 14-441 25-442 (448)
6 3h14_A Aminotransferase, class 100.0 1.5E-47 5.2E-52 374.9 39.7 339 71-440 30-378 (391)
7 3b46_A Aminotransferase BNA3; 100.0 5.6E-49 1.9E-53 391.8 29.9 346 71-440 56-443 (447)
8 3jtx_A Aminotransferase; NP_28 100.0 1.4E-47 4.9E-52 375.7 37.8 343 69-441 27-395 (396)
9 2o1b_A Aminotransferase, class 100.0 3.6E-48 1.2E-52 381.0 32.5 346 70-441 45-400 (404)
10 2dou_A Probable N-succinyldiam 100.0 3.3E-47 1.1E-51 370.6 38.3 357 54-441 9-375 (376)
11 2x5d_A Probable aminotransfera 100.0 1.6E-47 5.5E-52 377.4 35.6 345 71-440 36-394 (412)
12 1gd9_A Aspartate aminotransfer 100.0 2E-47 6.9E-52 373.8 35.1 344 72-440 26-382 (389)
13 3ezs_A Aminotransferase ASPB; 100.0 8.6E-48 2.9E-52 374.6 29.7 335 73-441 24-372 (376)
14 3fvs_A Kynurenine--oxoglutarat 100.0 1.3E-47 4.5E-52 379.2 31.2 347 72-441 28-419 (422)
15 3e2y_A Kynurenine-oxoglutarate 100.0 4.2E-47 1.4E-51 374.1 33.4 346 71-440 22-409 (410)
16 2x5f_A Aspartate_tyrosine_phen 100.0 1.2E-48 4E-53 387.8 21.2 370 14-441 16-426 (430)
17 3ele_A Amino transferase; RER0 100.0 2.8E-46 9.4E-51 366.8 37.3 344 70-441 33-393 (398)
18 1u08_A Hypothetical aminotrans 100.0 9.5E-47 3.2E-51 368.7 33.7 341 73-440 31-386 (386)
19 1o4s_A Aspartate aminotransfer 100.0 1.9E-46 6.5E-51 366.9 35.1 339 71-441 40-386 (389)
20 3kax_A Aminotransferase, class 100.0 1.9E-46 6.5E-51 365.9 34.1 344 71-441 23-382 (383)
21 3dyd_A Tyrosine aminotransfera 100.0 2.6E-46 8.9E-51 370.4 35.6 350 70-440 52-420 (427)
22 1yiz_A Kynurenine aminotransfe 100.0 3.3E-46 1.1E-50 370.0 34.3 347 73-441 38-426 (429)
23 1j32_A Aspartate aminotransfer 100.0 4.3E-46 1.5E-50 364.2 33.5 342 71-440 29-383 (388)
24 2o0r_A RV0858C (N-succinyldiam 100.0 3.9E-46 1.3E-50 367.4 32.5 343 73-441 26-393 (411)
25 2z61_A Probable aspartate amin 100.0 9.1E-46 3.1E-50 359.6 34.3 338 71-441 28-368 (370)
26 3fdb_A Beta C-S lyase, putativ 100.0 1.3E-46 4.6E-51 366.3 28.4 340 70-441 21-373 (377)
27 2zy4_A L-aspartate beta-decarb 100.0 1.9E-47 6.5E-52 387.7 22.3 391 16-440 13-518 (546)
28 1xi9_A Putative transaminase; 100.0 5.1E-46 1.7E-50 366.0 31.5 341 71-440 37-399 (406)
29 3nra_A Aspartate aminotransfer 100.0 8E-46 2.7E-50 364.5 32.4 344 73-441 40-402 (407)
30 3k7y_A Aspartate aminotransfer 100.0 3.2E-46 1.1E-50 365.2 27.8 333 71-440 28-401 (405)
31 3dzz_A Putative pyridoxal 5'-p 100.0 1.9E-45 6.3E-50 359.9 32.8 343 71-441 26-386 (391)
32 2gb3_A Aspartate aminotransfer 100.0 1.1E-44 3.9E-49 356.7 37.8 340 71-440 42-398 (409)
33 1bw0_A TAT, protein (tyrosine 100.0 6.6E-45 2.3E-49 359.2 34.9 346 72-441 33-410 (416)
34 3g0t_A Putative aminotransfera 100.0 1.7E-45 5.9E-50 365.7 30.8 351 71-440 43-433 (437)
35 2r2n_A Kynurenine/alpha-aminoa 100.0 1.4E-45 4.9E-50 364.9 30.0 341 72-441 31-421 (425)
36 4dq6_A Putative pyridoxal phos 100.0 5.4E-45 1.9E-49 356.6 33.6 343 71-441 31-390 (391)
37 3ihj_A Alanine aminotransferas 100.0 1.7E-45 5.9E-50 370.5 29.3 332 87-440 103-489 (498)
38 1d2f_A MALY protein; aminotran 100.0 8.1E-45 2.8E-49 355.5 32.3 338 73-441 29-386 (390)
39 1c7n_A Cystalysin; transferase 100.0 5.1E-45 1.7E-49 358.0 29.4 341 72-440 31-389 (399)
40 1v2d_A Glutamine aminotransfer 100.0 2.7E-44 9.1E-49 350.7 33.5 332 73-441 26-368 (381)
41 3l8a_A METC, putative aminotra 100.0 1.6E-44 5.5E-49 357.0 31.7 343 71-441 60-419 (421)
42 3tcm_A Alanine aminotransferas 100.0 8.1E-44 2.8E-48 358.8 35.9 333 86-440 107-490 (500)
43 3d6k_A Putative aminotransfera 100.0 2.5E-45 8.6E-50 362.8 24.0 340 73-440 33-414 (422)
44 3get_A Histidinol-phosphate am 100.0 2.8E-44 9.7E-49 348.4 30.0 327 71-441 29-364 (365)
45 1vp4_A Aminotransferase, putat 100.0 6.9E-45 2.3E-49 360.1 25.9 344 71-440 42-414 (425)
46 3ffh_A Histidinol-phosphate am 100.0 1E-43 3.5E-48 344.2 32.7 327 70-441 30-363 (363)
47 1iay_A ACC synthase 2, 1-amino 100.0 2.8E-44 9.7E-49 356.0 28.9 347 72-441 36-424 (428)
48 3g7q_A Valine-pyruvate aminotr 100.0 1.4E-43 4.8E-48 349.7 31.7 352 71-441 30-410 (417)
49 3ly1_A Putative histidinol-pho 100.0 6.5E-44 2.2E-48 344.3 28.7 328 70-440 14-348 (354)
50 2zyj_A Alpha-aminodipate amino 100.0 5.3E-44 1.8E-48 350.5 28.2 339 72-440 32-389 (397)
51 3piu_A 1-aminocyclopropane-1-c 100.0 7.2E-44 2.5E-48 353.8 29.1 348 72-441 38-429 (435)
52 3ppl_A Aspartate aminotransfer 100.0 1.4E-44 4.9E-49 358.0 23.9 340 72-440 33-416 (427)
53 1lc5_A COBD, L-threonine-O-3-p 100.0 1.1E-42 3.9E-47 337.1 36.5 328 71-441 23-357 (364)
54 3rq1_A Aminotransferase class 100.0 1E-43 3.5E-48 350.9 29.5 336 70-441 36-412 (418)
55 3hdo_A Histidinol-phosphate am 100.0 1.9E-42 6.6E-47 335.0 37.7 326 71-440 25-351 (360)
56 3bwn_A AT1G70560, L-tryptophan 100.0 6.5E-45 2.2E-49 356.0 20.2 328 71-441 21-384 (391)
57 1fg7_A Histidinol phosphate am 100.0 4E-43 1.4E-47 339.3 31.0 318 73-441 30-355 (356)
58 3ftb_A Histidinol-phosphate am 100.0 1.7E-42 6E-47 335.2 34.8 328 71-440 25-360 (361)
59 2zc0_A Alanine glyoxylate tran 100.0 4.6E-43 1.6E-47 344.9 30.5 344 71-440 33-400 (407)
60 4f4e_A Aromatic-amino-acid ami 100.0 1.3E-43 4.6E-48 350.3 26.7 337 71-441 48-419 (420)
61 7aat_A Aspartate aminotransfer 100.0 5E-44 1.7E-48 351.1 23.5 338 70-441 26-400 (401)
62 3fkd_A L-threonine-O-3-phospha 100.0 3.8E-43 1.3E-47 338.5 29.2 323 71-440 14-338 (350)
63 3fsl_A Aromatic-amino-acid ami 100.0 3.2E-43 1.1E-47 344.9 27.8 338 70-441 24-397 (397)
64 3euc_A Histidinol-phosphate am 100.0 7.2E-43 2.5E-47 338.8 29.8 327 72-441 30-365 (367)
65 3t18_A Aminotransferase class 100.0 6E-43 2E-47 344.9 28.0 331 70-439 35-405 (413)
66 3ez1_A Aminotransferase MOCR f 100.0 9.5E-44 3.2E-48 351.7 22.1 339 73-441 26-412 (423)
67 3f6t_A Aspartate aminotransfer 100.0 1.2E-43 4E-48 359.9 22.0 342 73-440 104-521 (533)
68 3b1d_A Betac-S lyase; HET: PLP 100.0 2.8E-46 9.6E-51 366.1 0.0 341 73-441 32-390 (392)
69 3op7_A Aminotransferase class 100.0 4.3E-42 1.5E-46 334.3 29.5 307 105-441 54-368 (375)
70 4eu1_A Mitochondrial aspartate 100.0 1.3E-42 4.4E-47 342.0 23.7 338 70-441 39-408 (409)
71 3p1t_A Putative histidinol-pho 100.0 8.9E-41 3.1E-45 320.1 34.5 319 71-441 15-334 (337)
72 3meb_A Aspartate aminotransfer 100.0 7E-42 2.4E-46 340.5 26.9 341 70-441 47-441 (448)
73 3if2_A Aminotransferase; YP_26 100.0 1.3E-41 4.5E-46 338.5 28.4 349 72-440 31-436 (444)
74 1uu1_A Histidinol-phosphate am 100.0 5.6E-41 1.9E-45 321.5 31.2 316 73-441 20-335 (335)
75 2q7w_A Aspartate aminotransfer 100.0 5.9E-42 2E-46 335.7 24.1 336 72-441 26-396 (396)
76 1ajs_A Aspartate aminotransfer 100.0 1.9E-41 6.7E-46 333.9 27.0 339 70-441 28-408 (412)
77 1yaa_A Aspartate aminotransfer 100.0 1.6E-41 5.6E-46 334.5 24.8 335 71-440 28-407 (412)
78 2hox_A ALLIIN lyase 1; cystein 100.0 6.6E-42 2.3E-46 338.1 21.2 326 72-441 56-422 (427)
79 3cq5_A Histidinol-phosphate am 100.0 6.3E-40 2.2E-44 318.4 32.9 323 74-440 32-364 (369)
80 4h51_A Aspartate aminotransfer 100.0 2.2E-40 7.5E-45 323.9 26.9 338 73-441 45-414 (420)
81 2ay1_A Aroat, aromatic amino a 100.0 1.1E-40 3.7E-45 326.6 23.4 335 71-440 25-392 (394)
82 3a2b_A Serine palmitoyltransfe 100.0 1.1E-38 3.9E-43 312.7 26.0 335 72-440 43-388 (398)
83 3tqx_A 2-amino-3-ketobutyrate 100.0 1.3E-37 4.4E-42 305.0 23.6 365 15-440 7-392 (399)
84 1bs0_A Protein (8-amino-7-oxon 100.0 1E-35 3.5E-40 290.2 25.5 333 72-440 39-383 (384)
85 1fc4_A 2-amino-3-ketobutyrate 100.0 3.8E-35 1.3E-39 287.9 21.5 359 17-440 10-393 (401)
86 1eg5_A Aminotransferase; PLP-d 100.0 2.3E-34 7.9E-39 280.3 25.8 329 75-440 3-372 (384)
87 1vjo_A Alanine--glyoxylate ami 100.0 2.1E-34 7E-39 281.8 22.9 316 83-441 42-392 (393)
88 2bwn_A 5-aminolevulinate synth 100.0 3.5E-34 1.2E-38 281.0 24.1 333 72-441 46-397 (401)
89 1t3i_A Probable cysteine desul 100.0 2.6E-34 9E-39 283.4 23.0 329 72-440 27-409 (420)
90 1kmj_A Selenocysteine lyase; p 100.0 1.1E-33 3.7E-38 277.6 27.0 329 72-440 22-401 (406)
91 2w8t_A SPT, serine palmitoyltr 100.0 8.3E-34 2.8E-38 280.7 25.8 333 71-440 63-411 (427)
92 1iug_A Putative aspartate amin 100.0 2.2E-33 7.5E-38 270.2 27.2 320 83-440 9-344 (352)
93 2dr1_A PH1308 protein, 386AA l 100.0 2E-33 6.9E-38 273.9 27.0 321 84-440 29-375 (386)
94 1e5e_A MGL, methionine gamma-l 100.0 3.4E-33 1.1E-37 274.0 24.8 316 75-440 21-391 (404)
95 1elu_A L-cysteine/L-cystine C- 100.0 6.2E-33 2.1E-37 270.8 24.0 333 73-440 16-388 (390)
96 2eh6_A Acoat, acetylornithine 100.0 4E-33 1.4E-37 270.9 21.6 331 71-441 27-375 (375)
97 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 2.5E-34 8.6E-39 278.9 11.4 325 72-440 7-366 (371)
98 4eb5_A Probable cysteine desul 100.0 1.8E-32 6.1E-37 266.8 23.9 331 76-440 3-369 (382)
99 3f9t_A TDC, L-tyrosine decarbo 100.0 2.5E-32 8.7E-37 266.8 24.4 317 84-441 40-395 (397)
100 3cai_A Possible aminotransfera 100.0 8.9E-32 3E-36 264.2 27.3 327 73-440 26-405 (406)
101 2ch1_A 3-hydroxykynurenine tra 100.0 1.4E-32 4.9E-37 268.9 21.5 316 78-440 21-379 (396)
102 3zrp_A Serine-pyruvate aminotr 100.0 1E-32 3.5E-37 268.6 20.0 313 83-440 10-359 (384)
103 3kki_A CAI-1 autoinducer synth 100.0 3.9E-32 1.3E-36 267.2 23.6 330 71-441 58-401 (409)
104 2z9v_A Aspartate aminotransfer 100.0 3.3E-32 1.1E-36 266.0 22.8 321 75-440 10-367 (392)
105 1svv_A Threonine aldolase; str 100.0 8.1E-32 2.8E-36 259.8 25.2 324 72-441 13-355 (359)
106 4hvk_A Probable cysteine desul 100.0 6.6E-32 2.2E-36 262.5 23.1 336 76-440 3-369 (382)
107 2huf_A Alanine glyoxylate amin 100.0 3.2E-32 1.1E-36 266.1 20.8 318 73-440 19-379 (393)
108 1m32_A 2-aminoethylphosphonate 100.0 6.3E-32 2.2E-36 261.1 21.3 327 73-441 4-362 (366)
109 3lvm_A Cysteine desulfurase; s 100.0 9.5E-32 3.3E-36 265.5 22.2 333 70-440 19-395 (423)
110 4adb_A Succinylornithine trans 100.0 1.2E-31 4.1E-36 263.3 22.0 336 71-441 38-397 (406)
111 2ord_A Acoat, acetylornithine 100.0 2E-32 6.8E-37 268.2 16.3 333 71-440 39-393 (397)
112 3ruy_A Ornithine aminotransfer 100.0 4.6E-32 1.6E-36 265.2 18.0 333 71-441 35-391 (392)
113 3i4j_A Aminotransferase, class 100.0 3E-31 1E-35 262.6 23.9 350 71-441 28-425 (430)
114 1v72_A Aldolase; PLP-dependent 100.0 9.8E-31 3.3E-35 252.0 26.7 321 72-441 7-350 (356)
115 3nnk_A Ureidoglycine-glyoxylat 100.0 3.3E-31 1.1E-35 260.5 22.9 320 74-440 14-386 (411)
116 1sff_A 4-aminobutyrate aminotr 100.0 5E-32 1.7E-36 267.8 16.1 341 71-440 40-420 (426)
117 3vax_A Putative uncharacterize 100.0 7.3E-32 2.5E-36 264.3 16.8 339 72-441 19-397 (400)
118 3isl_A Purine catabolism prote 100.0 1.2E-30 4.1E-35 256.9 25.6 319 74-440 12-386 (416)
119 2aeu_A Hypothetical protein MJ 100.0 9.7E-31 3.3E-35 253.9 23.6 317 73-440 29-367 (374)
120 1jg8_A L-ALLO-threonine aldola 100.0 3.4E-31 1.2E-35 254.5 19.9 315 73-440 4-342 (347)
121 2dkj_A Serine hydroxymethyltra 100.0 6.6E-31 2.3E-35 258.1 22.3 329 73-440 24-384 (407)
122 3ffr_A Phosphoserine aminotran 100.0 5.9E-30 2E-34 247.0 28.3 324 73-441 4-361 (362)
123 3kgw_A Alanine-glyoxylate amin 100.0 1.2E-30 4.3E-35 254.6 22.3 315 82-441 30-385 (393)
124 2yrr_A Aminotransferase, class 100.0 4.5E-31 1.5E-35 253.9 18.3 318 83-440 8-349 (353)
125 3lws_A Aromatic amino acid bet 100.0 1E-30 3.5E-35 252.3 19.2 312 92-441 25-356 (357)
126 2rfv_A Methionine gamma-lyase; 100.0 4E-30 1.4E-34 251.9 23.6 320 76-440 24-396 (398)
127 1vef_A Acetylornithine/acetyl- 100.0 7.1E-31 2.4E-35 256.9 17.4 334 71-441 44-394 (395)
128 3f0h_A Aminotransferase; RER07 100.0 9.4E-30 3.2E-34 247.2 23.7 323 73-440 19-370 (376)
129 2bkw_A Alanine-glyoxylate amin 100.0 5.5E-30 1.9E-34 249.4 22.0 329 73-441 5-381 (385)
130 3pj0_A LMO0305 protein; struct 100.0 8.6E-31 2.9E-35 252.9 16.0 326 72-441 13-359 (359)
131 2eo5_A 419AA long hypothetical 100.0 9.7E-30 3.3E-34 250.9 22.7 330 71-440 41-414 (419)
132 2c0r_A PSAT, phosphoserine ami 100.0 2.1E-29 7.2E-34 243.5 23.4 327 73-440 4-357 (362)
133 1ibj_A CBL, cystathionine beta 100.0 2.1E-30 7.1E-35 257.6 16.0 328 73-441 90-459 (464)
134 1b9h_A AHBA synthase, protein 100.0 6.3E-29 2.2E-33 242.5 25.9 313 80-440 5-384 (388)
135 2ez2_A Beta-tyrosinase, tyrosi 100.0 8.5E-29 2.9E-33 246.9 26.9 322 73-440 43-427 (456)
136 2pb2_A Acetylornithine/succiny 100.0 1.1E-29 3.6E-34 250.6 20.0 330 71-440 56-414 (420)
137 1qz9_A Kynureninase; kynurenin 100.0 4E-29 1.4E-33 246.1 23.8 327 73-440 28-398 (416)
138 3nx3_A Acoat, acetylornithine 100.0 9.3E-29 3.2E-33 241.9 24.9 340 71-441 35-392 (395)
139 1zod_A DGD, 2,2-dialkylglycine 100.0 8.2E-30 2.8E-34 252.5 17.5 342 71-440 42-428 (433)
140 1s0a_A Adenosylmethionine-8-am 100.0 1.1E-28 3.8E-33 244.1 25.6 336 71-441 42-421 (429)
141 3n5m_A Adenosylmethionine-8-am 100.0 2.1E-29 7E-34 251.0 19.4 344 71-441 48-449 (452)
142 3gju_A Putative aminotransfera 100.0 7E-29 2.4E-33 247.7 22.4 346 71-441 50-453 (460)
143 3dxv_A Alpha-amino-epsilon-cap 100.0 2.9E-29 9.8E-34 249.0 19.1 342 71-441 42-422 (439)
144 1w23_A Phosphoserine aminotran 100.0 2.2E-29 7.6E-34 243.0 17.3 326 73-440 3-356 (360)
145 2po3_A 4-dehydrase; external a 100.0 1.3E-27 4.5E-32 236.0 29.0 310 76-440 20-382 (424)
146 3a9z_A Selenocysteine lyase; P 100.0 1.1E-28 3.7E-33 244.4 20.7 333 72-440 17-424 (432)
147 4ffc_A 4-aminobutyrate aminotr 100.0 1.7E-28 5.9E-33 244.1 21.1 343 71-441 63-446 (453)
148 4a6r_A Omega transaminase; tra 100.0 2.5E-28 8.4E-33 243.6 21.5 345 71-441 49-446 (459)
149 3mc6_A Sphingosine-1-phosphate 100.0 1.3E-27 4.3E-32 241.0 25.2 321 85-440 75-433 (497)
150 3e9k_A Kynureninase; kynurenin 100.0 4.4E-28 1.5E-32 242.3 21.5 380 16-441 24-458 (465)
151 2fyf_A PSAT, phosphoserine ami 100.0 2.2E-27 7.5E-32 232.5 25.7 317 73-440 40-394 (398)
152 1mdo_A ARNB aminotransferase; 100.0 5.3E-27 1.8E-31 229.2 28.3 308 73-440 9-382 (393)
153 2oat_A Ornithine aminotransfer 100.0 6.2E-28 2.1E-32 239.1 21.6 334 71-441 75-436 (439)
154 1z7d_A Ornithine aminotransfer 100.0 4.1E-28 1.4E-32 240.1 19.6 333 71-440 64-425 (433)
155 3oks_A 4-aminobutyrate transam 100.0 4.6E-28 1.6E-32 241.0 20.0 340 71-441 60-448 (451)
156 3l44_A Glutamate-1-semialdehyd 100.0 1.5E-28 5E-33 243.6 16.4 332 71-441 54-427 (434)
157 1ax4_A Tryptophanase; tryptoph 100.0 8.1E-28 2.8E-32 240.5 21.8 312 88-440 55-437 (467)
158 1wyu_B Glycine dehydrogenase s 100.0 1.8E-27 6E-32 238.2 23.2 333 73-440 67-437 (474)
159 3n0l_A Serine hydroxymethyltra 100.0 3.8E-27 1.3E-31 232.0 25.0 334 73-441 26-386 (417)
160 3mad_A Sphingosine-1-phosphate 100.0 2.6E-27 8.7E-32 239.6 24.1 325 88-440 110-465 (514)
161 2oga_A Transaminase; PLP-depen 100.0 1.4E-27 4.8E-32 233.9 21.1 313 72-440 30-392 (399)
162 3dod_A Adenosylmethionine-8-am 100.0 1.8E-27 6.2E-32 236.6 21.2 343 71-441 43-440 (448)
163 1rv3_A Serine hydroxymethyltra 100.0 4.4E-27 1.5E-31 235.6 23.5 339 73-440 45-427 (483)
164 2cy8_A D-phgat, D-phenylglycin 100.0 7.2E-28 2.5E-32 239.9 17.2 330 71-440 56-431 (453)
165 3ecd_A Serine hydroxymethyltra 100.0 4.6E-27 1.6E-31 231.9 22.4 335 73-440 33-393 (425)
166 3k28_A Glutamate-1-semialdehyd 100.0 9.1E-28 3.1E-32 237.5 16.5 332 70-441 51-424 (429)
167 2vi8_A Serine hydroxymethyltra 100.0 8.1E-27 2.8E-31 228.7 22.9 327 73-440 25-383 (405)
168 3a8u_X Omega-amino acid--pyruv 99.9 1.6E-27 5.5E-32 237.2 17.3 336 71-440 49-443 (449)
169 3dr4_A Putative perosamine syn 99.9 5.8E-26 2E-30 221.8 27.8 315 72-441 22-390 (391)
170 3gbx_A Serine hydroxymethyltra 99.9 9.2E-27 3.1E-31 229.4 22.2 329 74-440 32-392 (420)
171 1cs1_A CGS, protein (cystathio 99.9 4.6E-26 1.6E-30 222.1 26.7 280 112-440 50-383 (386)
172 3fq8_A Glutamate-1-semialdehyd 99.9 2E-27 7E-32 234.9 16.6 337 71-441 51-424 (427)
173 3ndn_A O-succinylhomoserine su 99.9 7.4E-27 2.5E-31 229.1 20.4 280 114-439 81-411 (414)
174 3tfu_A Adenosylmethionine-8-am 99.9 3.3E-27 1.1E-31 234.9 18.0 337 71-441 72-450 (457)
175 1pff_A Methionine gamma-lyase; 99.9 2.6E-26 9E-31 219.0 23.4 277 118-441 2-331 (331)
176 2e7u_A Glutamate-1-semialdehyd 99.9 2.2E-27 7.4E-32 234.5 16.0 332 71-441 51-424 (424)
177 2fnu_A Aminotransferase; prote 99.9 3.2E-25 1.1E-29 215.0 29.9 302 85-440 10-368 (375)
178 3i5t_A Aminotransferase; pyrid 99.9 1.3E-26 4.4E-31 231.8 19.9 340 71-441 53-451 (476)
179 1gc0_A Methionine gamma-lyase; 99.9 5.2E-26 1.8E-30 222.6 23.4 287 112-440 63-397 (398)
180 3h7f_A Serine hydroxymethyltra 99.9 3.8E-26 1.3E-30 226.9 22.6 331 73-441 46-411 (447)
181 2c81_A Glutamine-2-deoxy-scyll 99.9 3.2E-25 1.1E-29 218.5 29.0 312 79-440 6-410 (418)
182 2epj_A Glutamate-1-semialdehyd 99.9 2.5E-27 8.5E-32 234.7 13.8 331 71-440 55-427 (434)
183 2cb1_A O-acetyl homoserine sul 99.9 9.2E-25 3.1E-29 214.7 32.0 311 82-439 30-411 (412)
184 4e77_A Glutamate-1-semialdehyd 99.9 8E-27 2.7E-31 230.7 17.1 336 71-441 52-426 (429)
185 3uwc_A Nucleotide-sugar aminot 99.9 1.1E-25 3.9E-30 218.2 23.5 312 73-440 7-367 (374)
186 3acz_A Methionine gamma-lyase; 99.9 9.2E-25 3.1E-29 213.0 29.8 248 113-407 58-330 (389)
187 2dgk_A GAD-beta, GADB, glutama 99.9 7.6E-25 2.6E-29 217.9 29.2 325 85-440 53-430 (452)
188 3hmu_A Aminotransferase, class 99.9 1.2E-26 4.2E-31 231.6 16.0 341 71-441 54-449 (472)
189 3qhx_A Cystathionine gamma-syn 99.9 4.2E-25 1.4E-29 215.5 26.1 282 112-436 64-390 (392)
190 3cog_A Cystathionine gamma-lya 99.9 2.5E-25 8.5E-30 217.8 23.8 285 109-440 63-398 (403)
191 1n8p_A Cystathionine gamma-lya 99.9 2.2E-25 7.5E-30 217.6 23.2 282 112-440 53-391 (393)
192 1qgn_A Protein (cystathionine 99.9 2.8E-25 9.4E-30 219.1 24.0 279 113-440 113-441 (445)
193 2oqx_A Tryptophanase; lyase, p 99.9 4.2E-26 1.4E-30 228.0 17.2 324 73-440 42-438 (467)
194 2cjg_A L-lysine-epsilon aminot 99.9 5.8E-26 2E-30 225.7 16.5 337 71-441 53-445 (449)
195 2x3l_A ORN/Lys/Arg decarboxyla 99.9 1.6E-25 5.5E-30 222.0 18.9 279 112-440 55-349 (446)
196 1wyu_A Glycine dehydrogenase ( 99.9 5.6E-24 1.9E-28 210.8 29.5 346 54-441 46-437 (438)
197 3hbx_A GAD 1, glutamate decarb 99.9 8.2E-24 2.8E-28 212.8 26.0 328 84-440 66-440 (502)
198 1o69_A Aminotransferase; struc 99.9 2.5E-23 8.6E-28 203.3 27.4 298 87-440 11-383 (394)
199 3frk_A QDTB; aminotransferase, 99.9 7.4E-24 2.5E-28 205.4 23.1 299 87-440 16-364 (373)
200 3nyt_A Aminotransferase WBPE; 99.9 7.3E-23 2.5E-27 198.0 30.0 299 86-439 14-359 (367)
201 2fq6_A Cystathionine beta-lyas 99.9 2.2E-22 7.5E-27 197.1 32.6 285 113-440 81-414 (415)
202 3ke3_A Putative serine-pyruvat 99.9 3E-24 1E-28 208.7 18.6 303 116-440 33-372 (379)
203 3ri6_A O-acetylhomoserine sulf 99.9 2.6E-23 8.8E-28 204.4 24.6 287 112-439 80-427 (430)
204 2z67_A O-phosphoseryl-tRNA(SEC 99.9 3.2E-24 1.1E-28 213.5 17.4 292 116-441 131-455 (456)
205 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 5.1E-22 1.7E-26 196.7 32.7 314 72-441 31-433 (437)
206 3ju7_A Putative PLP-dependent 99.9 7E-23 2.4E-27 198.6 24.7 313 77-441 5-372 (377)
207 1js3_A DDC;, DOPA decarboxylas 99.9 2.5E-23 8.5E-28 209.0 21.8 322 86-440 86-470 (486)
208 2qma_A Diaminobutyrate-pyruvat 99.9 5.9E-23 2E-27 206.7 24.6 329 85-440 111-492 (497)
209 3vp6_A Glutamate decarboxylase 99.9 1.5E-22 5.1E-27 204.0 25.0 323 87-440 109-501 (511)
210 3nmy_A Xometc, cystathionine g 99.9 1E-22 3.6E-27 198.6 22.7 268 113-425 66-382 (400)
211 2a7v_A Serine hydroxymethyltra 99.9 2.3E-22 7.8E-27 199.8 25.1 339 74-440 56-437 (490)
212 2okj_A Glutamate decarboxylase 99.9 8.5E-23 2.9E-27 205.9 21.7 305 107-440 121-498 (504)
213 2yky_A Beta-transaminase; tran 99.8 2.8E-25 9.4E-30 219.6 0.0 329 68-441 96-457 (465)
214 2ctz_A O-acetyl-L-homoserine s 99.9 9.2E-22 3.1E-26 193.7 21.2 286 114-441 58-420 (421)
215 1ohv_A 4-aminobutyrate aminotr 99.9 2.4E-22 8.2E-27 200.6 15.7 339 70-440 61-467 (472)
216 2jis_A Cysteine sulfinic acid 99.9 1.7E-21 5.7E-26 196.9 22.0 315 106-440 136-511 (515)
217 3i16_A Aluminum resistance pro 99.9 4.9E-22 1.7E-26 194.4 17.1 258 88-386 46-340 (427)
218 3b8x_A WBDK, pyridoxamine 5-ph 99.9 5.1E-20 1.7E-24 179.5 31.3 312 74-438 3-390 (390)
219 3k40_A Aromatic-L-amino-acid d 99.9 7.3E-21 2.5E-25 190.0 24.9 324 87-440 87-467 (475)
220 3jzl_A Putative cystathionine 99.9 7.6E-22 2.6E-26 192.4 17.1 255 88-386 32-323 (409)
221 3hvy_A Cystathionine beta-lyas 99.9 2.8E-21 9.5E-26 189.1 17.0 255 88-386 47-340 (427)
222 4e1o_A HDC, histidine decarbox 99.9 1.5E-20 5.1E-25 188.2 22.7 325 87-440 92-474 (481)
223 3ht4_A Aluminum resistance pro 99.9 3.5E-21 1.2E-25 189.2 15.4 255 115-399 66-343 (431)
224 3e77_A Phosphoserine aminotran 99.8 1.4E-19 4.8E-24 173.8 24.1 319 83-440 21-371 (377)
225 1c4k_A Protein (ornithine deca 99.8 1.8E-19 6.2E-24 186.7 26.3 296 112-440 171-562 (730)
226 2vyc_A Biodegradative arginine 99.8 7.2E-19 2.5E-23 183.9 25.3 166 115-303 206-402 (755)
227 3m5u_A Phosphoserine aminotran 99.8 4.6E-18 1.6E-22 162.7 24.3 320 73-440 5-356 (361)
228 3qm2_A Phosphoserine aminotran 99.8 7.4E-18 2.5E-22 162.7 23.7 323 74-440 28-381 (386)
229 3n75_A LDC, lysine decarboxyla 99.7 6.7E-17 2.3E-21 166.2 20.4 289 113-440 194-556 (715)
230 4ao9_A Beta-phenylalanine amin 99.7 2.6E-15 8.8E-20 147.3 20.3 328 70-441 85-443 (454)
231 3ou5_A Serine hydroxymethyltra 99.6 3.4E-14 1.1E-18 135.6 23.6 342 74-440 56-437 (490)
232 4atq_A 4-aminobutyrate transam 99.6 7.1E-14 2.4E-18 137.7 25.5 343 70-441 62-452 (456)
233 4e3q_A Pyruvate transaminase; 99.6 3E-13 1E-17 133.7 25.3 342 70-441 65-465 (473)
234 4a0g_A Adenosylmethionine-8-am 99.5 4.5E-14 1.6E-18 148.7 12.3 205 214-441 594-825 (831)
235 3hl2_A O-phosphoseryl-tRNA(SEC 99.4 2E-11 6.9E-16 117.1 21.1 293 118-440 116-457 (501)
236 3bc8_A O-phosphoseryl-tRNA(SEC 99.3 7.7E-11 2.6E-15 114.5 19.9 297 115-440 95-439 (450)
237 4ham_A LMO2241 protein; struct 96.9 0.0002 6.8E-09 57.6 1.0 31 13-43 49-81 (134)
238 3ic7_A Putative transcriptiona 96.5 0.00084 2.9E-08 53.2 1.8 31 13-43 46-78 (126)
239 3neu_A LIN1836 protein; struct 96.3 0.00099 3.4E-08 52.7 1.0 31 13-43 48-80 (125)
240 3tqn_A Transcriptional regulat 96.1 0.0014 4.8E-08 50.8 1.0 30 13-42 44-75 (113)
241 3by6_A Predicted transcription 96.0 0.0015 5.1E-08 51.7 1.0 30 13-42 46-77 (126)
242 2ek5_A Predicted transcription 95.9 0.002 6.7E-08 51.3 1.0 30 13-42 39-70 (129)
243 3edp_A LIN2111 protein; APC883 95.3 0.0041 1.4E-07 55.1 1.1 31 13-43 44-76 (236)
244 3eet_A Putative GNTR-family tr 95.1 0.006 2E-07 55.3 1.4 31 13-43 64-96 (272)
245 2wv0_A YVOA, HTH-type transcri 94.9 0.0074 2.5E-07 53.7 1.5 31 13-43 45-77 (243)
246 3f8m_A GNTR-family protein tra 94.9 0.0067 2.3E-07 54.2 1.0 30 13-43 47-78 (248)
247 1v4r_A Transcriptional repress 94.8 0.0071 2.4E-07 45.8 0.9 31 13-43 46-78 (102)
248 3bwg_A Uncharacterized HTH-typ 94.6 0.0087 3E-07 53.1 1.0 31 13-43 40-72 (239)
249 2b0l_A GTP-sensing transcripti 94.4 0.01 3.4E-07 44.9 0.9 30 13-42 54-87 (102)
250 1hw1_A FADR, fatty acid metabo 93.9 0.013 4.4E-07 51.9 0.7 30 13-42 42-73 (239)
251 2ra5_A Putative transcriptiona 93.9 0.0088 3E-07 53.4 -0.4 31 13-43 51-83 (247)
252 2v7f_A RPS19, RPS19E SSU ribos 92.9 0.027 9.2E-07 45.6 0.9 29 14-42 93-123 (150)
253 3ihu_A Transcriptional regulat 91.6 0.055 1.9E-06 47.2 1.4 30 13-42 50-81 (222)
254 3sxy_A Transcriptional regulat 91.0 0.048 1.6E-06 47.5 0.4 30 13-42 46-77 (218)
255 2hs5_A Putative transcriptiona 90.6 0.067 2.3E-06 47.3 1.0 30 13-42 62-93 (239)
256 2di3_A Bacterial regulatory pr 89.9 0.09 3.1E-06 46.4 1.2 30 13-42 39-74 (239)
257 3c7j_A Transcriptional regulat 89.3 0.1 3.4E-06 46.1 1.0 30 13-42 60-91 (237)
258 1q1h_A TFE, transcription fact 81.3 0.38 1.3E-05 36.5 0.6 29 13-41 44-78 (110)
259 2heo_A Z-DNA binding protein 1 73.3 0.95 3.2E-05 30.8 0.7 28 13-40 36-64 (67)
260 3dfz_A SIRC, precorrin-2 dehyd 72.4 39 0.0013 29.0 10.9 101 132-260 28-130 (223)
261 1kyq_A Met8P, siroheme biosynt 68.7 16 0.00053 32.6 7.8 37 132-168 10-46 (274)
262 1pjq_A CYSG, siroheme synthase 66.0 33 0.0011 33.1 10.2 97 132-255 9-106 (457)
263 2h09_A Transcriptional regulat 59.6 2.7 9.3E-05 33.7 0.9 29 14-42 66-96 (155)
264 2htj_A P fimbrial regulatory p 58.0 3.7 0.00012 28.9 1.3 29 13-41 25-58 (81)
265 3rkx_A Biotin-[acetyl-COA-carb 49.0 5.3 0.00018 36.7 1.1 29 14-42 31-62 (323)
266 3bzy_B ESCU; auto cleavage pro 44.5 13 0.00045 26.3 2.4 20 236-255 29-48 (83)
267 1c7s_A Beta-N-acetylhexosamini 44.5 32 0.0011 36.0 6.1 26 226-251 392-417 (858)
268 2yl5_A Beta-N-acetylhexosamini 43.1 17 0.0006 34.8 3.8 28 224-251 85-112 (442)
269 4df3_A Fibrillarin-like rRNA/T 42.9 84 0.0029 27.0 7.8 124 119-257 58-186 (233)
270 1bqc_A Protein (beta-mannanase 41.1 62 0.0021 28.8 7.1 22 233-254 64-85 (302)
271 1qbj_A Protein (double-strande 41.0 11 0.00037 26.6 1.5 28 14-41 39-69 (81)
272 2yl6_A Beta-N-acetylhexosamini 39.7 18 0.00062 34.6 3.3 27 225-251 83-109 (434)
273 2lnb_A Z-DNA-binding protein 1 39.3 8.6 0.00029 26.7 0.7 29 13-41 45-74 (80)
274 2vt1_B Surface presentation of 38.2 19 0.00064 26.2 2.4 21 235-255 28-48 (93)
275 1hjs_A Beta-1,4-galactanase; 4 38.2 34 0.0012 31.3 4.9 39 224-262 50-88 (332)
276 1yht_A DSPB; beta barrel, hydr 36.9 60 0.0021 30.1 6.4 59 192-251 47-112 (367)
277 3t7y_A YOP proteins translocat 36.8 18 0.00063 26.4 2.2 21 235-255 43-63 (97)
278 4gqr_A Pancreatic alpha-amylas 35.9 25 0.00084 33.9 3.7 28 232-259 75-102 (496)
279 3c01_E Surface presentation of 35.8 19 0.00066 26.3 2.2 21 235-255 28-48 (98)
280 3l5o_A Uncharacterized protein 34.2 21 0.00071 31.7 2.5 72 156-247 139-213 (270)
281 2ya0_A Putative alkaline amylo 34.1 27 0.00092 35.9 3.8 28 232-259 253-280 (714)
282 2k4b_A Transcriptional regulat 34.0 10 0.00035 27.9 0.4 17 15-31 66-82 (99)
283 3jth_A Transcription activator 33.4 13 0.00045 26.8 1.0 26 13-38 47-73 (98)
284 3pqk_A Biofilm growth-associat 33.4 16 0.00056 26.6 1.5 26 13-38 47-73 (102)
285 1fob_A Beta-1,4-galactanase; B 33.0 48 0.0016 30.3 5.0 39 224-262 50-88 (334)
286 1y0u_A Arsenical resistance op 32.9 12 0.00042 26.9 0.7 25 14-39 55-80 (96)
287 3e2i_A Thymidine kinase; Zn-bi 32.7 1.1E+02 0.0039 26.0 6.8 105 136-260 28-141 (219)
288 1on2_A Transcriptional regulat 32.4 14 0.00047 28.9 1.0 18 14-31 34-51 (142)
289 1p6r_A Penicillinase repressor 32.2 12 0.00039 26.2 0.4 17 15-31 40-56 (82)
290 2x4h_A Hypothetical protein SS 31.8 13 0.00045 28.9 0.7 27 14-40 43-70 (139)
291 1g94_A Alpha-amylase; beta-alp 30.0 38 0.0013 32.4 3.9 29 232-260 63-91 (448)
292 1ht6_A AMY1, alpha-amylase iso 29.9 44 0.0015 31.5 4.2 29 232-260 67-95 (405)
293 1qgp_A Protein (double strande 29.9 17 0.00059 25.2 1.0 18 14-31 43-60 (77)
294 2jsc_A Transcriptional regulat 29.7 18 0.00063 27.3 1.3 19 13-31 45-63 (118)
295 2ojp_A DHDPS, dihydrodipicolin 29.4 1.5E+02 0.0051 26.3 7.6 75 137-240 72-152 (292)
296 2y75_A HTH-type transcriptiona 29.1 18 0.00063 27.7 1.2 28 13-40 37-67 (129)
297 1lwj_A 4-alpha-glucanotransfer 28.9 46 0.0016 31.7 4.2 28 232-259 68-95 (441)
298 3rcn_A Beta-N-acetylhexosamini 28.7 42 0.0014 33.1 3.9 27 225-251 215-241 (543)
299 1mxg_A Alpha amylase; hyperthe 28.4 48 0.0017 31.5 4.3 28 232-259 85-112 (435)
300 3a5f_A Dihydrodipicolinate syn 28.2 1.6E+02 0.0053 26.2 7.4 86 137-254 72-163 (291)
301 2e8y_A AMYX protein, pullulana 27.9 36 0.0012 34.9 3.5 28 233-260 315-342 (718)
302 1gcy_A Glucan 1,4-alpha-maltot 27.9 52 0.0018 32.3 4.5 29 232-260 91-119 (527)
303 2bv6_A MGRA, HTH-type transcri 27.7 34 0.0012 26.3 2.6 18 14-31 63-80 (142)
304 2d1h_A ST1889, 109AA long hypo 27.3 20 0.0007 26.0 1.1 19 13-31 47-65 (109)
305 2ya1_A Putative alkaline amylo 26.9 38 0.0013 36.4 3.5 27 233-259 561-587 (1014)
306 1ud2_A Amylase, alpha-amylase; 26.7 44 0.0015 32.3 3.7 28 232-259 79-106 (480)
307 3bh4_A Alpha-amylase; calcium, 26.3 45 0.0015 32.2 3.7 28 232-259 77-104 (483)
308 2z1k_A (NEO)pullulanase; hydro 26.2 54 0.0019 31.5 4.3 28 232-259 95-122 (475)
309 1hvx_A Alpha-amylase; hydrolas 26.2 45 0.0015 32.6 3.7 28 232-259 80-107 (515)
310 3cuo_A Uncharacterized HTH-typ 26.1 19 0.00067 25.7 0.8 18 14-31 50-67 (99)
311 2gjx_A Beta-hexosaminidase alp 25.9 51 0.0018 32.2 4.0 58 192-252 176-233 (507)
312 1wza_A Alpha-amylase A; hydrol 25.8 59 0.002 31.4 4.4 27 232-258 80-106 (488)
313 3b1s_B Flagellar biosynthetic 31.7 14 0.0005 26.4 0.0 22 236-257 29-50 (87)
314 2whl_A Beta-mannanase, baman5; 25.7 44 0.0015 29.7 3.3 23 232-254 62-84 (294)
315 1wpc_A Glucan 1,4-alpha-maltoh 25.7 47 0.0016 32.1 3.7 28 232-259 81-108 (485)
316 2j9r_A Thymidine kinase; TK1, 25.5 1.1E+02 0.0036 26.0 5.4 105 135-259 27-140 (214)
317 2guy_A Alpha-amylase A; (beta- 25.5 53 0.0018 31.6 4.1 28 232-259 96-123 (478)
318 1jae_A Alpha-amylase; glycosid 25.1 50 0.0017 31.8 3.7 29 232-260 73-101 (471)
319 3k69_A Putative transcription 24.9 34 0.0011 27.6 2.1 29 14-42 40-72 (162)
320 4aie_A Glucan 1,6-alpha-glucos 24.8 49 0.0017 32.4 3.7 27 232-258 78-104 (549)
321 1ua7_A Alpha-amylase; beta-alp 24.8 47 0.0016 31.4 3.5 29 232-260 73-101 (422)
322 2aaa_A Alpha-amylase; glycosid 24.8 58 0.002 31.4 4.2 29 232-260 96-124 (484)
323 1j0h_A Neopullulanase; beta-al 24.6 59 0.002 32.4 4.3 29 232-260 221-249 (588)
324 3tgn_A ADC operon repressor AD 24.5 25 0.00086 27.2 1.2 18 14-31 63-80 (146)
325 1ylf_A RRF2 family protein; st 24.4 25 0.00085 27.9 1.2 28 14-41 42-71 (149)
326 2jli_A YSCU, YOP proteins tran 24.1 40 0.0014 25.8 2.2 20 236-255 73-92 (123)
327 2qvo_A Uncharacterized protein 24.0 28 0.00096 24.9 1.3 18 14-31 42-59 (95)
328 7a3h_A Endoglucanase; hydrolas 24.0 49 0.0017 29.6 3.2 22 233-254 79-100 (303)
329 2hmc_A AGR_L_411P, dihydrodipi 23.8 95 0.0032 28.5 5.2 87 137-255 94-188 (344)
330 3pzt_A Endoglucanase; alpha/be 23.4 51 0.0017 30.0 3.2 22 233-254 104-125 (327)
331 2dh2_A 4F2 cell-surface antige 23.3 67 0.0023 30.5 4.2 29 232-260 80-108 (424)
332 4gmf_A Yersiniabactin biosynth 23.2 4E+02 0.014 24.5 9.5 27 231-257 103-129 (372)
333 3bja_A Transcriptional regulat 23.2 47 0.0016 25.2 2.6 19 13-31 58-76 (139)
334 3bzs_A ESCU; auto cleavage pro 23.2 41 0.0014 26.3 2.2 20 236-255 83-102 (137)
335 3fkr_A L-2-keto-3-deoxyarabona 23.0 71 0.0024 28.8 4.1 38 215-257 138-176 (309)
336 4g81_D Putative hexonate dehyd 22.9 1.5E+02 0.0051 25.8 6.1 97 136-242 9-116 (255)
337 4fgs_A Probable dehydrogenase 22.7 86 0.0029 27.7 4.5 94 136-242 29-133 (273)
338 1ea9_C Cyclomaltodextrinase; h 22.5 75 0.0026 31.6 4.5 29 232-260 217-245 (583)
339 1tvn_A Cellulase, endoglucanas 22.5 55 0.0019 29.0 3.3 22 233-254 78-99 (293)
340 3dhu_A Alpha-amylase; structur 22.5 64 0.0022 30.8 3.9 27 232-258 82-108 (449)
341 2gqq_A Leucine-responsive regu 22.4 23 0.00078 28.5 0.6 19 13-31 38-56 (163)
342 3r0a_A Putative transcriptiona 22.3 29 0.00099 26.4 1.2 18 14-31 54-71 (123)
343 2wc7_A Alpha amylase, catalyti 22.3 56 0.0019 31.6 3.5 26 233-258 102-127 (488)
344 1wzl_A Alpha-amylase II; pullu 22.3 70 0.0024 31.8 4.3 28 232-259 218-245 (585)
345 1g01_A Endoglucanase; alpha/be 22.3 54 0.0019 30.3 3.3 23 233-255 89-111 (364)
346 1o5k_A DHDPS, dihydrodipicolin 22.2 1.7E+02 0.006 26.1 6.6 106 117-255 64-176 (306)
347 3jug_A Beta-mannanase; TIM-bar 22.2 53 0.0018 30.2 3.1 23 232-254 85-107 (345)
348 2kko_A Possible transcriptiona 21.8 19 0.00064 26.7 -0.1 25 14-38 50-75 (108)
349 1tks_A 3,4-dihydroxy-2-butanon 21.8 92 0.0032 26.1 4.1 35 214-252 159-194 (204)
350 3bro_A Transcriptional regulat 21.7 38 0.0013 25.9 1.8 18 14-31 62-79 (141)
351 1jak_A Beta-N-acetylhexosamini 21.6 69 0.0024 31.3 3.9 58 193-252 189-249 (512)
352 2jlj_A YSCU, YOP proteins tran 21.6 46 0.0016 26.3 2.2 20 236-255 82-101 (144)
353 1r1u_A CZRA, repressor protein 21.5 24 0.00082 25.9 0.5 25 14-38 51-76 (106)
354 1zja_A Trehalulose synthase; s 21.4 75 0.0026 31.3 4.3 28 232-259 78-105 (557)
355 1qwg_A PSL synthase;, (2R)-pho 21.3 67 0.0023 27.9 3.3 38 224-261 45-82 (251)
356 2fu4_A Ferric uptake regulatio 21.3 28 0.00096 24.1 0.8 18 14-31 50-67 (83)
357 3b73_A PHIH1 repressor-like pr 21.3 32 0.0011 25.8 1.1 27 13-39 40-67 (111)
358 3a11_A Translation initiation 21.1 3.6E+02 0.012 24.5 8.5 98 133-253 139-249 (338)
359 1m53_A Isomaltulose synthase; 20.6 80 0.0027 31.3 4.3 28 232-259 91-118 (570)
360 1egz_A Endoglucanase Z, EGZ, C 20.4 65 0.0022 28.5 3.3 22 233-254 76-97 (291)
361 1tbx_A ORF F-93, hypothetical 20.4 36 0.0012 24.4 1.3 18 14-31 38-55 (99)
362 3n9k_A Glucan 1,3-beta-glucosi 20.4 63 0.0022 30.4 3.3 23 232-254 111-133 (399)
363 3edf_A FSPCMD, cyclomaltodextr 20.4 81 0.0028 31.5 4.3 27 232-258 197-223 (601)
364 1sfx_A Conserved hypothetical 20.2 34 0.0012 24.7 1.1 18 14-31 46-63 (109)
365 2bhu_A Maltooligosyltrehalose 20.2 88 0.003 31.2 4.5 29 232-260 191-219 (602)
No 1
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=100.00 E-value=9.3e-56 Score=439.01 Aligned_cols=394 Identities=70% Similarity=1.202 Sum_probs=337.2
Q ss_pred ccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHH
Q 013521 46 MESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIAD 125 (441)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 125 (441)
+..++..|+|..+..+......++.++++|+|++|+++++.|+.+.+++.+.+.......+..+|++..|..+||+++|+
T Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~ 109 (432)
T 3ei9_A 30 MSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAK 109 (432)
T ss_dssp HHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHH
T ss_pred HHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHH
Confidence 44455557888888888877888887889999999999999999999999999876544566789888899999999999
Q ss_pred HHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCc
Q 013521 126 KFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF 205 (441)
Q Consensus 126 ~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~ 205 (441)
|+.+++++++++|++|+|+++++.++..++++||.|++++|+|+++...+...|..+.+......+.+++.++++.++++
T Consensus 110 ~~~~~~~~~~~~i~~t~G~~~al~~l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (432)
T 3ei9_A 110 TFYGGLGIGDDDVFVSDGAKCDISRLQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGF 189 (432)
T ss_dssp HHHTTTTCCGGGEEEESCHHHHHHHHHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTT
T ss_pred HHHccCCCCcceEEECCChHHHHHHHHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCC
Confidence 99887888999999999999999988888899999999999999999999998865543333333346888888876677
Q ss_pred cCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCC
Q 013521 206 FPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS 285 (441)
Q Consensus 206 ~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~S 285 (441)
..+++..+++++|++++||||||.++|.+++++|+++|++||++||+||+|+++.+++.+.++..+++.++++++++|||
T Consensus 190 ~~~l~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 269 (432)
T 3ei9_A 190 FPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFS 269 (432)
T ss_dssp SCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESH
T ss_pred cCChhhCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecch
Confidence 77777777899999999999999999999999999999999999999999999888766667777655567899999999
Q ss_pred cccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 286 KFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 286 K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
|.+|++|+|+||++++++++......+.+.+.......+.+++.++|.++.+++.+.+.++++++++.++++++++.+.|
T Consensus 270 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 349 (432)
T 3ei9_A 270 NYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTF 349 (432)
T ss_dssp HHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998874222222345666666666677899999999999975555788999999999999999999
Q ss_pred HhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 366 QSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
+++|+.+.++.+++|+|+++++.++.+++..+++++||.+.||+.|++.+++++||+++.+++++++++++|++
T Consensus 350 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~rl~~ 423 (432)
T 3ei9_A 350 TSLGYDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQ 423 (432)
T ss_dssp HHTTCCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred HHCCceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHHHHHHHHHH
Confidence 99999888777899999999866778889999988899999999998777899999998899999999999986
No 2
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=2.6e-53 Score=423.47 Aligned_cols=395 Identities=61% Similarity=1.082 Sum_probs=331.0
Q ss_pred cccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHH
Q 013521 45 NMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIA 124 (441)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 124 (441)
.+..+.+.++|..+..+......+++++++|+|+.|+++++.|+.+.+++.+.+..........+|++..|..+||++++
T Consensus 42 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia 121 (449)
T 3qgu_A 42 NFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVA 121 (449)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHH
T ss_pred HHHhCCCcchHHHHHHHHHHHHhhCCCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHH
Confidence 34445555778788777777777777889999999999999999999999999987654345668988889999999999
Q ss_pred HHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCC
Q 013521 125 DKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENN 204 (441)
Q Consensus 125 ~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~ 204 (441)
+|+..++++++++|++|+|+++++.++..++++||.|++++|+|+++...+...|.+|.+. ...+.+++.++++++++
T Consensus 122 ~~~~~g~~~~~~~i~~t~G~~~al~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~--~~~~~~~~~~~~~~~~~ 199 (449)
T 3qgu_A 122 STFYGHAGRAADEIFISDGSKCDIARIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHN--GTGFDGIEYMVCNPDNH 199 (449)
T ss_dssp HHHHTTTTCCGGGEEEESCHHHHHHHHHHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBC--SSSBTTEEEEECCGGGT
T ss_pred HHHHcCCCCCHHHEEEccCHHHHHHHHHHHhCCCCEEEEcCCCChhHHHHHHHcCCccccc--ccccceeEEEecccccC
Confidence 9986555678899999999999999887788999999999999999999999999543211 11223488999987767
Q ss_pred ccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEec
Q 013521 205 FFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISS 283 (441)
Q Consensus 205 ~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S 283 (441)
+..++++.+++++|++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..++...+++++++|
T Consensus 200 ~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 279 (449)
T 3qgu_A 200 FFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCS 279 (449)
T ss_dssp TCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEE
T ss_pred CcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEec
Confidence 777776667899999999999999999999999999999999999999999999888753 5567667555678899999
Q ss_pred CCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 013521 284 FSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVD 363 (441)
Q Consensus 284 ~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 363 (441)
|||.+|++|+|+||++++++++......+...+.......+.+++.+.|.++.+++.+.+.++++++++.++++++++.+
T Consensus 280 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 359 (449)
T 3qgu_A 280 FSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKT 359 (449)
T ss_dssp CSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998863211122234555566666678999999999999864557889999999999999999
Q ss_pred HHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 364 AFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 364 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.|+++|+++..+.+++|+|+++++.++.+++..+++++||.+.||..|++.++++|||++..+++++++++++|++++
T Consensus 360 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~ 437 (449)
T 3qgu_A 360 TFTEMGFSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAY 437 (449)
T ss_dssp HHHHTTCCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 999999988877789999999985567888889998889999999999877789999998889999999999998763
No 3
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=100.00 E-value=2.3e-51 Score=403.37 Aligned_cols=380 Identities=44% Similarity=0.776 Sum_probs=305.3
Q ss_pred cccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHH
Q 013521 45 NMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIA 124 (441)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 124 (441)
++..+.+++.|.++.++......+++++++|+|+.|++++++++.+.+++.+.+..........+|++..|..++|+++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la 85 (400)
T 3asa_A 6 HFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLS 85 (400)
T ss_dssp HHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHH
T ss_pred hhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHH
Confidence 34444444678887777776666777788999999999888899999999998876543234567987889999999999
Q ss_pred HHHhhhCC-CCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccce-eEEeecCCC
Q 013521 125 DKFYKDMG-IEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRN-IVYMNCRPE 202 (441)
Q Consensus 125 ~~l~~~~~-~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~-v~~v~~~~~ 202 (441)
+++. .+ +++++|++|+|+++++.++..++++||+|++++|+|+++...+...| .+ ++.++.+++
T Consensus 86 ~~l~--~g~~~~~~v~~~~G~~~al~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~ 151 (400)
T 3asa_A 86 EDFY--RGFVDAKEIFISDGAKVDLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTG------------AKEIIALPCLQE 151 (400)
T ss_dssp HTTS--TTSSCGGGEEEESCHHHHHHHHHHHHCSSCEEEEEESCCHHHHHHHHHTT------------CSEEEEEECCGG
T ss_pred HHHH--cCCCCHHHEEEccChHHHHHHHHHHcCCCCEEEECCCCcHHHHHHHHHcC------------CcceEecccchh
Confidence 9964 24 78899999999999999876777999999999999999999888888 46 888888765
Q ss_pred CCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEE
Q 013521 203 NNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEI 281 (441)
Q Consensus 203 ~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i 281 (441)
+++..++++.+++++|++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. +.++..++..+++++++
T Consensus 152 ~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 231 (400)
T 3asa_A 152 NAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEI 231 (400)
T ss_dssp GTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEE
T ss_pred cCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEE
Confidence 56666665546889999999999999999999999999999999999999999998877653 45566654335678999
Q ss_pred ecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 282 ~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
+||||.+|++|+|+||+++++++.......+...........+.+++.+.|.++.+++++. +++++++.++++++.+
T Consensus 232 ~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l 308 (400)
T 3asa_A 232 NSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLL 308 (400)
T ss_dssp EECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHH
T ss_pred ecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHH
Confidence 9999999999999999999987721100000112222233344468899999988888743 4578889999999999
Q ss_pred HHHHHhCCCeeeCCCCceEEEEE-cC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 362 VDAFQSLGLKVNGGKNAPYVWVQ-FP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 362 ~~~L~~~g~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
.+.|++.|+++.++.+|+|+|++ ++ +.+..+++..+++++||.+.||+.|++.+++++||++..+++++++++++|++
T Consensus 309 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~ 388 (400)
T 3asa_A 309 RKALLATGFEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQM 388 (400)
T ss_dssp HHHHHHTTCEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHHHHHHC
T ss_pred HHHHHHCCCeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHHHHHHH
Confidence 99999889988776789999999 87 33555788888877799999999997656789999987899999999999987
Q ss_pred hC
Q 013521 440 FL 441 (441)
Q Consensus 440 ~l 441 (441)
++
T Consensus 389 ~~ 390 (400)
T 3asa_A 389 AP 390 (400)
T ss_dssp --
T ss_pred HH
Confidence 64
No 4
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=100.00 E-value=2.1e-50 Score=394.45 Aligned_cols=341 Identities=23% Similarity=0.370 Sum_probs=287.5
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
+.++|+|+.|+|++++|+.+.+++.+.+.. ...+|++..|..++|+++++|+.+ +..+++++|++|+|+++++
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al 104 (385)
T 1b5p_A 30 GVDLVALTAGEPDFDTPEHVKEAARRALAQ-----GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL 104 (385)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHH
Confidence 357899999999988889999999988753 335788778999999999999976 4456789999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v~i~~ 222 (441)
.+ +..++++||+|++++|+|+++...++..| .+++.+++++++++..+++ + .+++++|++++
T Consensus 105 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 172 (385)
T 1b5p_A 105 FNLFQAILDPGDEVIVLSPYWVSYPEMVRFAG------------GVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNS 172 (385)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEES
T ss_pred HHHHHHhcCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeC
Confidence 98 57778999999999999999999999888 5889999875344444432 2 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
||||||.++|.+++++|+++|++||++||+||+|+++.+++.+.++..++. +++++++||||.+|++|+|+||+++++
T Consensus 173 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~i~~~s~SK~~~~~G~RiG~~~~~~ 250 (385)
T 1b5p_A 173 PNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP--EHTLTVNGAAKAFAMTGWRIGYACGPK 250 (385)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCT--TTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCC--CCEEEEEechhhcCCcccceEEEEeCH
Confidence 999999999999999999999999999999999999887653345666643 779999999999999999999999988
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD--GFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++ .+.+.........+++.+.|.++.+++++. +.+++++.++.++++++.+.+.|+++|+.+.++.+++|
T Consensus 251 ~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 322 (385)
T 1b5p_A 251 EV--------IKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFY 322 (385)
T ss_dssp HH--------HHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTTE
T ss_pred HH--------HHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEE
Confidence 77 456666555555568899999988888641 34678999999999999999999988888887778899
Q ss_pred EEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|++++ +.+..++.+.++ ++||.+.||+.|+. ++++||+++.+++++++++++|++++
T Consensus 323 ~~~~~~~~~~~~~~l~~~l~-~~gv~v~~g~~f~~--~~~iRis~~~~~~~i~~~l~~l~~~l 382 (385)
T 1b5p_A 323 VLMDTSPIAPDEVRAAERLL-EAGVAVVPGTDFAA--FGHVRLSYATSEENLRKALERFARVL 382 (385)
T ss_dssp EEEECTTTCSSHHHHHHHHH-HTTEECEESGGGTC--TTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred EEEecCCCCCCHHHHHHHHH-HCCeEEecccccCC--CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 999996 346677888877 66999999999965 67999999888999999999998864
No 5
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=1.5e-49 Score=395.49 Aligned_cols=394 Identities=17% Similarity=0.252 Sum_probs=288.6
Q ss_pred CcccchhhhHHhhhhCCCCCcccccccc-ccccccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCC--CCcHHH
Q 013521 14 PLKATVPFTMDFFLSSRWPVPRHCTEVS-RNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQ--PIPDII 90 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~~~~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~--~~~~~~ 90 (441)
+.++||..||+.|..+|+.....+.|-. .+........ ..+.++.. ... .+++|+|+.|.|+. .+++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-s~~~~~~~----~~~---~~~~i~l~~g~p~~~~~p~~~v 96 (448)
T 3aow_A 25 VQLNIYVHSQEGIGMEENIKSMLGDVERFFSKKALEMRA-SEVRELLK----LVE---TSDIISLAGGLPNPKTFPKEII 96 (448)
T ss_dssp --------------------CTTSCGGGGCCHHHHHCCC-CHHHHHHH----HHH---TSSSEECCCCCCCGGGSCHHHH
T ss_pred cccccccccchhhhhhhcccccccchHHHhhHHHhcCCC-cHHHHHHH----hcc---CCCcEeCCCCCCCchhCCHHHH
Confidence 3489999999999999993322222211 1111122221 11111111 111 24689999998764 367888
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCc
Q 013521 91 TSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSF 168 (441)
Q Consensus 91 ~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y 168 (441)
.+++.+.+.... ....+|++..|..+||+++++++.+..++ ++++|++|+|+++++.+ +..++++||.|+++.|+|
T Consensus 97 ~~a~~~~l~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y 174 (448)
T 3aow_A 97 RDILVEIMEKYA--DKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTY 174 (448)
T ss_dssp HHHHHHHHHHSH--HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred HHHHHHHHHhhh--HHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCCh
Confidence 999998886521 12457988889999999999999654455 78999999999999998 567789999999999999
Q ss_pred hhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C------CCccEEE-EcCCCCccccCCCHHHHHH
Q 013521 169 PAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T------SRTDIIF-FCSPNNPTGHAATWQQLKK 238 (441)
Q Consensus 169 ~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~------~~~~~v~-i~~p~NPtG~~~~~~~~~~ 238 (441)
+++...+...| .+++.++.+++ +++++ +++ . .++++|+ +++||||||.++|.+++++
T Consensus 175 ~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~ 241 (448)
T 3aow_A 175 LAALQAFNFYE------------PQYIQIPLDDE-GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKY 241 (448)
T ss_dssp HHHHHHHHTTC------------CEEEEEEEETT-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHH
T ss_pred HHHHHHHHHcC------------CEEEEeccCCC-CCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHH
Confidence 99999998888 58888888764 33322 221 1 3788885 5699999999999999999
Q ss_pred HHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHH
Q 013521 239 LVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFN 317 (441)
Q Consensus 239 i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 317 (441)
|+++|++||++||+||+|+++.+++. +.++..++ ..+++++++||||.++ +|+|+||+++++++ ++.+.
T Consensus 242 i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~-~~~~vi~~~S~SK~~~-~GlriG~v~~~~~l--------~~~l~ 311 (448)
T 3aow_A 242 LLELASEYDFIVVEDDPYGELRYSGNPEKKIKALD-NEGRVIYLGTFSKILA-PGFRIGWMVGDPGI--------IRKME 311 (448)
T ss_dssp HHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGC-TTSCEEEEEESTTTTC-GGGCCEEEEECHHH--------HHHHH
T ss_pred HHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcC-CCCCEEEEccchhhcc-ccccEEEEEeCHHH--------HHHHH
Confidence 99999999999999999999888654 45666664 3467899999999999 99999999999877 45666
Q ss_pred HHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhC---CCeeeCCCCceEEEEEcC-CCChHH
Q 013521 318 RIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSL---GLKVNGGKNAPYVWVQFP-GSSSWD 392 (441)
Q Consensus 318 ~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~-~~~~~~ 392 (441)
........+++.+.|.++.+++++..+ .+++++++.++++++.+.+.|++. |+.+..+.+|+|+|++++ +.+..+
T Consensus 312 ~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~~~~~~ 391 (448)
T 3aow_A 312 IAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKK 391 (448)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTTCCHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCCCCHHH
Confidence 555544456789999999999975433 678999999999999999999875 788877778999999997 446677
Q ss_pred HHHHHHHhcCeEEeCCCCcCCC--CCCeEEEEeec-CHHHHHHHHHHHHhhC
Q 013521 393 VFAEILEKTHILTIPGSGFGPG--GNEHIRVSAFG-HREYISEACRRLKNFL 441 (441)
Q Consensus 393 ~~~~ll~~~gi~v~pg~~f~~~--~~~~iRls~~~-~~~~~~~~l~~l~~~l 441 (441)
++.+++++ ||.+.||..|+.. +++++||+++. +++++++++++|++++
T Consensus 392 l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l 442 (448)
T 3aow_A 392 MLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETI 442 (448)
T ss_dssp HHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 88888877 9999999999653 46899999865 7899999999998763
No 6
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=1.5e-47 Score=374.94 Aligned_cols=339 Identities=27% Similarity=0.414 Sum_probs=283.8
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
++++|+|+.|+++++.|+.+.+++.+.+.. ...+|++..|..++|+++++++.+ +..+++++|++|+|+++++
T Consensus 30 g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al 104 (391)
T 3h14_A 30 GRRIIHMEVGQPGTGAPRGAVEALAKSLET-----DALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF 104 (391)
T ss_dssp TCCCEECCCSSCSSCSCHHHHHHHHHHHC---------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence 467999999999999899999999998763 345788888999999999999975 4557899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---CCCCccEEEEcCCC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---TTSRTDIIFFCSPN 224 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~~~~~~~v~i~~p~ 224 (441)
.+ +..++++||+|+++.|+|+++...+...| .+++.++.++++++..+++ +. ++++|++++||
T Consensus 105 ~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~-~~~~v~i~~p~ 171 (391)
T 3h14_A 105 LLAFTALFDSGDRVGIGAPGYPSYRQILRALG------------LVPVDLPTAPENRLQPVPADFAGL-DLAGLMVASPA 171 (391)
T ss_dssp HHHHHHHCCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEECCGGGTTSCCHHHHTTS-CCSEEEEESSC
T ss_pred HHHHHHhcCCCCEEEEcCCCCccHHHHHHHcC------------CEEEEeecCcccCCCCCHHHHHhc-CCeEEEECCCC
Confidence 98 67788999999999999999999999998 5899999987655555533 33 78999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
||||.++|.+++++|+++|++||+++|+||+|.++.+++.+.++... .+++++++|+||.+|++|+|+||+++++++
T Consensus 172 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~---~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 248 (391)
T 3h14_A 172 NPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALEL---TDECYVINSFSKYFSMTGWRVGWMVVPEDQ 248 (391)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT---CSSSEEEEESSSTTCCTTSCCEEEECCGGG
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhc---CCCEEEEEechhccCCccceeEEEEeCHHH
Confidence 99999999999999999999999999999999998887655555444 467899999999999999999999999887
Q ss_pred cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee-eCCCCceEEEE
Q 013521 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV-NGGKNAPYVWV 383 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~ 383 (441)
.+.+.........+++.+.|.++.+++. ..+++++.+++++++++.+.+.|+++++.. ..+.+++++|+
T Consensus 249 --------~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 318 (391)
T 3h14_A 249 --------VRVVERIAQNMFICAPHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYA 318 (391)
T ss_dssp --------HHHHHHHHHHTTCCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEE
T ss_pred --------HHHHHHHHhhhccCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEE
Confidence 4666666666666788999998888887 457789999999999999999999886654 45667899999
Q ss_pred EcC--CCChHHHHHHHHHhcCeEEeCCCCcCC-CCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 384 QFP--GSSSWDVFAEILEKTHILTIPGSGFGP-GGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 384 ~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+++ +.+..++...+++++||.+.||+.|+. .+++++||++..+++++++++++|+++
T Consensus 319 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~ 378 (391)
T 3h14_A 319 DVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAF 378 (391)
T ss_dssp ECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHH
T ss_pred ecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 997 346778888888877999999999976 457899999988899999999999876
No 7
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-49 Score=391.75 Aligned_cols=346 Identities=21% Similarity=0.331 Sum_probs=286.9
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
+.++|+|+.|.|++++|+.+.+++.+++.. ....+|++..|..++|+++|+++.+ +.++++++|++|+|+++++
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDI----PMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTS----GGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhC----cCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 457999999999988899999999998864 2356898888999999999999976 4456788999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCC----------CccCCCC---C--C
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPEN----------NFFPDLS---T--T 212 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~----------~~~~~~~---~--~ 212 (441)
.+ +..++++||+|++++|+|+++...+...| .+++.++.++++ ++..+++ + .
T Consensus 132 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 199 (447)
T 3b46_A 132 LSCLMGLLNAGDEVIVFEPFFDQYIPNIELCG------------GKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT 199 (447)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC
T ss_pred HHHHHHHcCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEEeCCCccccccccccccCcccCHHHHHHhhc
Confidence 98 67778999999999999999999999888 578888876542 2333322 1 2
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc-CCCcceeEEEecCCcccCCc
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI-PGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~-~~~~~~~i~i~S~SK~~~~~ 291 (441)
+++++|++++||||||.++|.+++++|+++|++||++||+||+|.++.+++.+.++..+ ++..+++++++|+||.+|++
T Consensus 200 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 279 (447)
T 3b46_A 200 SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAAT 279 (447)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCT
T ss_pred cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCc
Confidence 67899999999999999999999999999999999999999999998886544455555 22346789999999999999
Q ss_pred cceeEEEEe-eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013521 292 GVRLGWTVV-PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-FQALRTVIDYYKENAKIIVDAFQSLG 369 (441)
Q Consensus 292 G~r~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g 369 (441)
|+|+||+++ ++++ ++.+.........+.+.+.|.++.++|+... ..+++++++.++++++.+.+.|+++|
T Consensus 280 G~riG~~~~~~~~l--------~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 351 (447)
T 3b46_A 280 GWRIGWVLSLNAEL--------LSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELG 351 (447)
T ss_dssp TSCCEEEECSCHHH--------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhEEEEeCCHHH--------HHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999 8777 4556555555556678999998888887432 25688899999999999999999889
Q ss_pred CeeeCCCCceEEEEEcCCC----------------ChHHHHHHHHHhcCeEEeCCCCcCCC-----CCCeEEEEeecCHH
Q 013521 370 LKVNGGKNAPYVWVQFPGS----------------SSWDVFAEILEKTHILTIPGSGFGPG-----GNEHIRVSAFGHRE 428 (441)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ll~~~gi~v~pg~~f~~~-----~~~~iRls~~~~~~ 428 (441)
+++..+.+|+|+|++++.. ++.+++.++++++||.+.||+.|+.. ++++|||+++.+++
T Consensus 352 ~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e 431 (447)
T 3b46_A 352 LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDA 431 (447)
T ss_dssp CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHH
T ss_pred CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHH
Confidence 8888778899999999742 34567778887789999999988643 26899999988999
Q ss_pred HHHHHHHHHHhh
Q 013521 429 YISEACRRLKNF 440 (441)
Q Consensus 429 ~~~~~l~~l~~~ 440 (441)
++++++++|+++
T Consensus 432 ~l~~~~~~l~~~ 443 (447)
T 3b46_A 432 YLENAVERLKLL 443 (447)
T ss_dssp HHHHHHHHGGGG
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 8
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=1.4e-47 Score=375.69 Aligned_cols=343 Identities=22% Similarity=0.383 Sum_probs=287.9
Q ss_pred CCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC---CCCC-cEEEcCCc
Q 013521 69 HPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG---IEGD-EIFISDGA 144 (441)
Q Consensus 69 ~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~---~~~~-~I~~t~G~ 144 (441)
.+++++|+|+.|++++++|+.+.+++.+.+. ...+|++..|..++|+++++|+.+.++ ++++ +|++|+|+
T Consensus 27 ~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~------~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~ 100 (396)
T 3jtx_A 27 PEGMEAVPLHIGEPKHPTPKVITDALTASLH------ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGS 100 (396)
T ss_dssp CTTCCCEECSCCSCCSCCCHHHHHHHHHTGG------GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSH
T ss_pred ccCCCeEEeCCcCCCCCCCHHHHHHHHHHhh------hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCc
Confidence 3467899999999999999999999998764 345788888999999999999976445 5688 99999999
Q ss_pred HHHHHH-HHHhcCCC-----CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC
Q 013521 145 QSDISR-LQMLLGSN-----VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS 213 (441)
Q Consensus 145 ~~al~~-l~~l~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~ 213 (441)
++++.+ +..++++| |.|+++.|+|+++...+...| .+++.++.+. +++.+|++. .+
T Consensus 101 ~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~-~g~~~d~~~l~~~~~~ 167 (396)
T 3jtx_A 101 REALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGG------------GEIHFANCPA-PSFNPDWRSISEEVWK 167 (396)
T ss_dssp HHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTT------------CEEEEEECCT-TTCCCCGGGSCHHHHH
T ss_pred HHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcC------------CEEEEeecCC-CCCccCHHHHHHhhcc
Confidence 999998 56778886 799999999999999999988 5889999844 465555443 24
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccc----cCCCcceeEEEecCCccc
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYE----IPGAREVAIEISSFSKFA 288 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~----~~~~~~~~i~i~S~SK~~ 288 (441)
++++|++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++ .+.+... +....++++++.||||.+
T Consensus 168 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 247 (396)
T 3jtx_A 168 RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRS 247 (396)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTS
T ss_pred CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEecccccc
Confidence 78999999999999999999999999999999999999999999988876 3444332 122257789999999999
Q ss_pred CCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 289 GFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 289 ~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+++|+|+||+++++++ .+.+.........+++.+.|.++.+++.+ .+++++.++.++++++.+.+.|+++
T Consensus 248 ~~~G~r~G~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~ 317 (396)
T 3jtx_A 248 NVPGLRSGFVAGDAEL--------LKNFLLYRTYHGSAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQV 317 (396)
T ss_dssp SCGGGCCEEEEECHHH--------HHHHHHHHHHHTCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccceEEEEeCHHH--------HHHHHHHHhhcccCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998877 46666666555667899999999988874 3678999999999999999999886
Q ss_pred CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC------CCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 369 GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP------GGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+.+..+.+++|+|++++..+..++...+++++||.+.||+.|+. .+.+++||++..+++++++++++|++++
T Consensus 318 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 318 -FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY 395 (396)
T ss_dssp -SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred -CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 55566678999999998666788888888878999999999875 3578999999779999999999999875
No 9
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=3.6e-48 Score=381.01 Aligned_cols=346 Identities=25% Similarity=0.396 Sum_probs=289.1
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCC-CcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEG-DEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~-~~I~~t~G~~~ 146 (441)
++.++|+|+.|.++++.++.+.+++.+.+.. ....+|++..|..++|+++|+|+.+.++ +++ ++|++|+|+++
T Consensus 45 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 45 GPLPLINMAVGIPDGPTPQGIIDHFQKALTI----PENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp CSSCCEECCCCSCSSCCCHHHHHHHHHHTTC----HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred CCCCEEecCCcCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 3456899999999888889999999988753 1234687778999999999999976434 455 79999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCC-----CCccEEEE
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT-----SRTDIIFF 220 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~-----~~~~~v~i 220 (441)
++.+ +..++++||+|+++.|+|+++...+...| .+++.++.++ +++..|++.. +++++|++
T Consensus 121 al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~l 187 (404)
T 2o1b_A 121 GLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLAD------------GKPVPLNLEP-PHYLPDWSKVDSQIIDKTKLIYL 187 (404)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTT------------CEEEEEECCT-TTCCCCGGGSCHHHHHHEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCC------------CEEEEeccCc-ccCcCCHHHHHHhhccCceEEEE
Confidence 9998 67778999999999999999999998888 5888898876 3554444432 46899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
++|+||||.++|.+++++|+++|++||++||+||+|.++.+++.+.++..+++..+++++++||||.+|++|+|+||+++
T Consensus 188 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 267 (404)
T 2o1b_A 188 TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG 267 (404)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEec
Confidence 99999999999999999999999999999999999999887654556666543347789999999999989999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++++ ++.+.........+++.+.|.++.+++++. ..+++++++.++++++.+.+.|+++|+.+.++.+++|
T Consensus 268 ~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~ 338 (404)
T 2o1b_A 268 NKDM--------IQALKKYQTHTNAGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIY 338 (404)
T ss_dssp CHHH--------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECCCBSSE
T ss_pred CHHH--------HHHHHHHHhhccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCcceE
Confidence 8877 456665555555668999999999888743 5678999999999999999999988888877777889
Q ss_pred EEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|++++ +.+..++..++++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 339 ~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l 400 (404)
T 2o1b_A 339 VWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELA 400 (404)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGG
T ss_pred EEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 999997 4456778888887679999999998765678999999778899999999998864
No 10
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=3.3e-47 Score=370.61 Aligned_cols=357 Identities=23% Similarity=0.397 Sum_probs=291.2
Q ss_pred chHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hC
Q 013521 54 LFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DM 131 (441)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~ 131 (441)
.|..+.+....... ++.++|+|+.|.++++.++.+.+++.+.+.. ....+|++..|..++|+++|+|+.+ +.
T Consensus 9 ~~~~~~~~~~~~~~--~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~~~~~l~~~ia~~~~~~~g~ 82 (376)
T 2dou_A 9 VFLVVDEAKRKARE--RGVGLIDLSIGSTDLPPPEAPLKALAEALND----PTTYGYCLKSCTLPFLEEAARWYEGRYGV 82 (376)
T ss_dssp HHHHHHHHHHHHHH--TTCCCEECSSCCCCCCCCHHHHHHHHHHTTC----GGGSSCCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHhhc--cCCCEEeccCCCCCCCCCHHHHHHHHHHHhC----CCcCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 44555544433322 3567999999999888889999999988754 2345787667899999999999976 34
Q ss_pred CCCCC-cEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC
Q 013521 132 GIEGD-EIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL 209 (441)
Q Consensus 132 ~~~~~-~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 209 (441)
.++++ +|++|+|+++++.+ +..++++||+|+++.|+|+++...+...| .+++.++. + +++..|+
T Consensus 83 ~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~~~~-~-~~~~~d~ 148 (376)
T 2dou_A 83 GLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVAS------------LRTFLIPL-R-EDGLADL 148 (376)
T ss_dssp CCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTT------------CEEEEECB-C-TTSSBCG
T ss_pred CCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcC------------CEEEEeeC-C-CCCCCCH
Confidence 44566 99999999999997 67778899999999999999999998888 58888887 3 3544444
Q ss_pred CCC-----CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecC
Q 013521 210 STT-----SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSF 284 (441)
Q Consensus 210 ~~~-----~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~ 284 (441)
+.. +++++|++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++.+.++....+..+++++++||
T Consensus 149 ~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 228 (376)
T 2dou_A 149 KAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSL 228 (376)
T ss_dssp GGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEH
T ss_pred HHHHHhhccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecc
Confidence 332 468999999999999999999999999999999999999999999988765444555543345678999999
Q ss_pred CcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 013521 285 SKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDA 364 (441)
Q Consensus 285 SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (441)
||.+|++|+|+||+++++++ .+.+.........+++.+.|.++.+++++ ...++++.++.++++++.+.+.
T Consensus 229 sK~~~~~G~r~G~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~ 299 (376)
T 2dou_A 229 SKSYNLAGFRLGFALGSEEA--------LARLERVKGVIDFNQYAGVLRMGVEALKT-PKEVVRGYARVYRERALGMAEA 299 (376)
T ss_dssp HHHHTCGGGCCEEEEECHHH--------HHHHHHHHHHHCCCSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCChhheeEEEecCHHH--------HHHHHHHHHhcccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999899999999998877 45666555555556789999999999975 3567899999999999999999
Q ss_pred HHhCCCeeeCCCCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 365 FQSLGLKVNGGKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 365 L~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|+++ +.+.++.+++|+|++++ +.+..++...++++ ||.+.||+.|+..+++++||++..+++++++++++|++++
T Consensus 300 L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 300 LKGV-LSLLPPRATMYLWGRLPEGVDDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp HTTT-SEECCCCBSSEEEEECCTTCCHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred HHHh-cCccCCCeeEEEEEECCCCCCHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 9988 78777677889999997 44567788888777 9999999998755678999999778999999999999875
No 11
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.6e-47 Score=377.43 Aligned_cols=345 Identities=27% Similarity=0.486 Sum_probs=282.8
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCC-CcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEG-DEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~-~~I~~t~G~~~a 147 (441)
+.++|+|+.|.++++.++.+.+++.+.+.. ....+|++..|..++|+++|+|+.+ +..+++ ++|++|+|++++
T Consensus 36 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a 111 (412)
T 2x5d_A 36 GEDIIDLSMGNPDGPTPPHIVEKLCTVAQR----EDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEG 111 (412)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHTC-------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHH
T ss_pred CCCEEecCCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHH
Confidence 467999999999888889999999887754 2245788788999999999999976 444677 799999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+.+ +..++++||+|+++.|+|+++...+...| .+++.++.++++++..|++. .+++++|+++
T Consensus 112 ~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~ 179 (412)
T 2x5d_A 112 LAHLMLATLDHGDTILVPNPSYPIHIYGAVIAG------------AQVRSVPLVPGIDFFNELERAIRESIPKPRMMILG 179 (412)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHT------------CEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEE
T ss_pred HHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEeecCCccCCCCCHHHHHHhcccCceEEEEC
Confidence 998 56678999999999999999999999888 58888998765354333221 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
+||||||.++|.+++++|+++|++||++||+||+|.++.+++ .+.++..+++..+++++++|+||.+|++|+|+||+++
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 259 (412)
T 2x5d_A 180 FPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVG 259 (412)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEc
Confidence 999999999999999999999999999999999999988754 3456666644357889999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++++ ++.+.........+++.+.|.++.++++.. .++++++++.++++++.+.+.|+++|+.+.++.+|+|
T Consensus 260 ~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~ 330 (412)
T 2x5d_A 260 NPEL--------VSALARIKSYHDYGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVKGLREAGWMVENPKASMY 330 (412)
T ss_dssp CHHH--------HHHHHHHHHHHCCCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSBSSE
T ss_pred CHHH--------HHHHHHHHhhhccCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCeeeE
Confidence 8877 456665555555678899999999888743 3678999999999999999999988888877777889
Q ss_pred EEEEcCC-C---ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 381 VWVQFPG-S---SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 381 ~~~~~~~-~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+|++++. . +..++...+++++||.+.||+.|+..+++++||++..+++++++++++|+++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 394 (412)
T 2x5d_A 331 VWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAM 394 (412)
T ss_dssp EEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHH
T ss_pred EEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 9999973 3 5677888887767999999999976567899999977899999999999875
No 12
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=2e-47 Score=373.79 Aligned_cols=344 Identities=26% Similarity=0.404 Sum_probs=287.9
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCc-EEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDE-IFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~-I~~t~G~~~al 148 (441)
+++++|+.|.+++++++.+.+++.+.+.. ...+|++..|..++|+++|+|+.+ +..+++++ |++|+|+++++
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~ 100 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALDK-----GLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAF 100 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHH
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHhC-----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHH
Confidence 46899999999888889999999998864 234688778999999999999976 34467889 99999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..++++||+|++++|+|+++...++..| .+++.++.++++++..+++. .+++++|++++
T Consensus 101 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 168 (389)
T 1gd9_A 101 LMGLSAFLKDGEEVLIPTPAFVSYAPAVILAG------------GKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINS 168 (389)
T ss_dssp HHHHTTTCCTTCEEEEEESCCTTHHHHHHHHT------------CEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHHhCCCCCEEEEcCCCchhHHHHHHHCC------------CEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEEC
Confidence 98 56678999999999999999999998888 58888988753344444322 25789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..+++..+++++++|+||.+|++|+|+||++++
T Consensus 169 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 248 (389)
T 1gd9_A 169 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAP 248 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEEC
Confidence 999999999999999999999999999999999999887654 4566666543577899999999999999999999998
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
+++ .+.+.........+++.+.|.++.++++.... .++++++++++++++.+.+.|+++|+++..+.++++
T Consensus 249 ~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 320 (389)
T 1gd9_A 249 SWI--------IERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFY 320 (389)
T ss_dssp HHH--------HHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTE
T ss_pred HHH--------HHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeE
Confidence 876 45666555555566889999999999975221 278999999999999999999988888877777889
Q ss_pred EEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 381 VWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 381 ~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+|++++ +.+..++...+++++||.+.||..|+..+++++||++..+++++++++++|+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~ 382 (389)
T 1gd9_A 321 IFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERV 382 (389)
T ss_dssp ECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 999996 446677888887567999999999876567899999988999999999999875
No 13
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=8.6e-48 Score=374.63 Aligned_cols=335 Identities=21% Similarity=0.310 Sum_probs=284.2
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEEcCCcHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFISDGAQSDISR 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~t~G~~~al~~ 150 (441)
++|+|+.|++++++|+.+.+++.+.+ ....+|++..|..++|+++|+|+.+.++ +++++|++|+|+++++.+
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~------~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~ 97 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHT------HSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFN 97 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTG------GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHH
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhh------hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHH
Confidence 79999999999988999999988866 2345788888999999999999976444 489999999999999997
Q ss_pred -HHHhcCC--CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCC
Q 013521 151 -LQMLLGS--NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNN 225 (441)
Q Consensus 151 -l~~l~~~--gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~N 225 (441)
+..++++ ||+|+++.|+|+++...+...| .+++.++.++++++.+++++ .++++++++++|||
T Consensus 98 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~n 165 (376)
T 3ezs_A 98 FPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIK------------AKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNN 165 (376)
T ss_dssp HHHHHTTTCSSCEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCT
T ss_pred HHHHHcCCCCCCEEEEecCCcHhHHHHHHHcC------------CEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCC
Confidence 6777899 9999999999999999999888 58999998876566554443 25789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCC-----CcceeEEEecCCcccCCccceeEEEEe
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG-----AREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~-----~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
|||.++|.+++++|+++|++||+++|+||+|.++.+++.+.++....+ ..+++++++||||.+|++|+|+||+++
T Consensus 166 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 245 (376)
T 3ezs_A 166 PTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAG 245 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEee
Confidence 999999999999999999999999999999999888765555544311 357789999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
++++ .+.+.........+.+.+.|.++.+++++ .+++++.++.++++++.+.+.|+ ++. .+.+++|
T Consensus 246 ~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~~~~~~ 311 (376)
T 3ezs_A 246 DSRL--------LEKYKAFRAYLGYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK--NTL--IYPYSFY 311 (376)
T ss_dssp CHHH--------HHHHHHHHTTTCCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST--TCC--CCSBSSE
T ss_pred CHHH--------HHHHHHHHhhhcCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc--CCC--CCCcceE
Confidence 8877 46666665555667899999999998875 34578999999999999999998 665 4568999
Q ss_pred EEEEcCCCChHHHHHHHHHhcCeEEeCCCCcC--CCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFPGSSSWDVFAEILEKTHILTIPGSGFG--PGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+|++++ +..++...+++++||.+.||+.|+ ..+.+++||++..+++++++++++|++++
T Consensus 312 ~~~~~~--~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 372 (376)
T 3ezs_A 312 VYLPVQ--NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYR 372 (376)
T ss_dssp EEEECS--CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EEEECC--CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 999997 567888888875799999999998 45679999999779999999999998763
No 14
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=1.3e-47 Score=379.16 Aligned_cols=347 Identities=19% Similarity=0.283 Sum_probs=291.3
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCC-CcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEG-DEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~-~~I~~t~G~~~al 148 (441)
.++|+|+.|.|++++|+.+.+++.+.+... ....+|++..|..++|+++++++.+ +..+++ ++|++|+|+++++
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~---~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGD---FMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSC---GGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhCC---CccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 478999999999999999999999988741 1246898888999999999999975 445677 7999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC----CC------CccCCCC---C--C
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP----EN------NFFPDLS---T--T 212 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~----~~------~~~~~~~---~--~ 212 (441)
.+ +..++++||+|+++.|+|+++...+...| .+++.++.+. ++ ++..+++ + .
T Consensus 105 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~ 172 (422)
T 3fvs_A 105 FTAFQALVDEGDEVIIIEPFFDCYEPMTMMAG------------GRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT 172 (422)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC
T ss_pred HHHHHHHcCCCCEEEEcCCCchhhHHHHHHcC------------CEEEEEecccccccccccccccCCCCCHHHHHhhcC
Confidence 97 67778999999999999999999999888 5888888875 22 3333432 1 3
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCc
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
+++++|++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..++...+++++++||||.+|++
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~ 252 (422)
T 3fvs_A 173 SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT 252 (422)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCG
T ss_pred CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCc
Confidence 5789999999999999999999999999999999999999999999888753 556766655567899999999999999
Q ss_pred cceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP------DGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~------~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
|+|+||+++++++ .+.+.........+++.+.|.++.+++.+ ....+++++++.++++++.+.+.|
T Consensus 253 G~r~G~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 324 (422)
T 3fvs_A 253 GWKVGWVLGPDHI--------MKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSL 324 (422)
T ss_dssp GGCCEEEECCHHH--------HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCHHH--------HHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887 45566555555666889999998888863 123577899999999999999999
Q ss_pred HhCCCeeeCCCCceEEEEEcCC----CC----------hHHHHHHHHHhcCeEEeCCCCcCC-----CCCCeEEEEeecC
Q 013521 366 QSLGLKVNGGKNAPYVWVQFPG----SS----------SWDVFAEILEKTHILTIPGSGFGP-----GGNEHIRVSAFGH 426 (441)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~----~~----------~~~~~~~ll~~~gi~v~pg~~f~~-----~~~~~iRls~~~~ 426 (441)
+++|+.+..+.+++|+|++++. .. ..+++..+++++||.+.||+.|+. .+.+++||+++.+
T Consensus 325 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~ 404 (422)
T 3fvs_A 325 QSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKD 404 (422)
T ss_dssp HTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCC
T ss_pred HHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCC
Confidence 9999998888899999999852 11 457888888888999999999863 4578999999889
Q ss_pred HHHHHHHHHHHHhhC
Q 013521 427 REYISEACRRLKNFL 441 (441)
Q Consensus 427 ~~~~~~~l~~l~~~l 441 (441)
++++++++++|++++
T Consensus 405 ~e~i~~~l~~l~~~l 419 (422)
T 3fvs_A 405 EATLQAMDEKLRKWK 419 (422)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
No 15
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=100.00 E-value=4.2e-47 Score=374.10 Aligned_cols=346 Identities=21% Similarity=0.312 Sum_probs=289.2
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCC-CcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEG-DEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~-~~I~~t~G~~~a 147 (441)
+.++|+|+.|.|++++|+.+.+++.+.+.. ....+|++..|..++|+++|+++.+ +..+++ ++|++|+|++++
T Consensus 22 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a 97 (410)
T 3e2y_A 22 DPSVVNLGQGFPDISPPSYVKEELSKAAFI----DNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGS 97 (410)
T ss_dssp STTSEECSSCCCCSCCCHHHHHHHHHHHTC----GGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhC----ccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence 357999999999999999999999998864 3455798888999999999999975 555777 899999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC---------CCccCCCC---C--C
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE---------NNFFPDLS---T--T 212 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~---------~~~~~~~~---~--~ 212 (441)
+.+ +..++++||.|+++.|+|+++...+...| .+++.++.+.. .++..+++ + .
T Consensus 98 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~ 165 (410)
T 3e2y_A 98 LFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAG------------AVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS 165 (410)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC
T ss_pred HHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEEeccccccccccccccCCcCCHHHHHhhcC
Confidence 997 67778999999999999999999999888 57788877531 12223322 1 3
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCc
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
+++++|++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..++...+++++++||||.+|++
T Consensus 166 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~ 245 (410)
T 3e2y_A 166 SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVT 245 (410)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCG
T ss_pred CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCC
Confidence 5789999999999999999999999999999999999999999999888653 456666655568899999999999999
Q ss_pred cceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP------DGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~------~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
|+|+||+++++++ .+.+.........+++.+.|.++.+++.+ ....+++++++.++++++.+.+.|
T Consensus 246 G~r~G~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 317 (410)
T 3e2y_A 246 GWKLGWSIGPAHL--------IKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLL 317 (410)
T ss_dssp GGCCEEEECCHHH--------HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECHHH--------HHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887 45566665555666889999988888863 223577899999999999999999
Q ss_pred HhCCCeeeCCCCceEEEEEcCC----CC--------hHHHHHHHHHhcCeEEeCCCCcCCC-----CCCeEEEEeecCHH
Q 013521 366 QSLGLKVNGGKNAPYVWVQFPG----SS--------SWDVFAEILEKTHILTIPGSGFGPG-----GNEHIRVSAFGHRE 428 (441)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~----~~--------~~~~~~~ll~~~gi~v~pg~~f~~~-----~~~~iRls~~~~~~ 428 (441)
+++|+.+..+.+++|+|++++. .+ +.+++.++++++||.+.||+.|+.. +.++|||+++.+++
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e 397 (410)
T 3e2y_A 318 NSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDS 397 (410)
T ss_dssp HTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHH
T ss_pred HHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHH
Confidence 9999998888899999999852 11 2377888888889999999998643 36899999988999
Q ss_pred HHHHHHHHHHhh
Q 013521 429 YISEACRRLKNF 440 (441)
Q Consensus 429 ~~~~~l~~l~~~ 440 (441)
++++++++|+++
T Consensus 398 ~l~~~l~~l~~~ 409 (410)
T 3e2y_A 398 TLDAAEEIFRAW 409 (410)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 999999999875
No 16
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=100.00 E-value=1.2e-48 Score=387.76 Aligned_cols=370 Identities=15% Similarity=0.140 Sum_probs=293.3
Q ss_pred CcccchhhhHHhhhhCCCCCccccccccccccccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCC-CCCCcHHH--
Q 013521 14 PLKATVPFTMDFFLSSRWPVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDT-TQPIPDII-- 90 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~-- 90 (441)
++|+||..||++|.+ |+..+ +|+++.. .. . .+++++|+.|.+ +++.++.+
T Consensus 16 vs~~tv~~a~~~l~~-~~~~~-~~~~~~~-----------------~~----~----~~~~i~l~~g~~~~~~~~~~~~~ 68 (430)
T 2x5f_A 16 QSNATAFAMLSDLGQ-NMFYP-KGILSQS-----------------AE----A----KSTTYNATIGMATNKDGKMFASS 68 (430)
T ss_dssp HHCHHHHHHCCHHHH-HCCCC-CHHHHHH-----------------HH----T----TTCSEECCCSSCEETTEECCCHH
T ss_pred hhhhHHHHHHhhhhh-hccCc-hHHHHHH-----------------Hh----c----CCCcEEeeeeeccCCCCchhhHH
Confidence 459999999999999 77222 4554321 00 0 136899999999 77766655
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh-hCCCCCCc---EEEcCCcHHHHHH-HHHhcCCCCEEEEeC
Q 013521 91 TSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK-DMGIEGDE---IFISDGAQSDISR-LQMLLGSNVTVAVQD 165 (441)
Q Consensus 91 ~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~~~~---I~~t~G~~~al~~-l~~l~~~gd~Vlv~~ 165 (441)
.+++.+.+.. ....+|++..|..++|+++|+++.+ +.++++++ |++|+|+++++.+ +..++++||+|++++
T Consensus 69 ~~a~~~~~~~----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~ 144 (430)
T 2x5f_A 69 LDAMFNDLTP----DEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPE 144 (430)
T ss_dssp HHTTBSSCCG----GGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEES
T ss_pred HHHHHHhcCc----ccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcC
Confidence 5555554321 2456898888999999999999965 45677889 9999999999998 677789999999999
Q ss_pred CCchhhHhHHHH-hccccccccccCccceeEEeecCCCCCccCCCCC-----C---CCccEEEEcCCCCccccCCCHHHH
Q 013521 166 PSFPAYIDTSVI-VGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T---SRTDIIFFCSPNNPTGHAATWQQL 236 (441)
Q Consensus 166 p~y~~~~~~~~~-~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~---~~~~~v~i~~p~NPtG~~~~~~~~ 236 (441)
|+|+++...+.. .| .+++.++.++++ +..+++. . .+++++++++||||||.++|.+++
T Consensus 145 p~y~~~~~~~~~~~g------------~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l 211 (430)
T 2x5f_A 145 HNWGNYKLVFNTRNG------------ANLQTYPIFDKD-GHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEV 211 (430)
T ss_dssp SCCTHHHHHHTTTTC------------CEEEEECCBCTT-SCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHH
T ss_pred CcCccHHHHHHHhcC------------CeEEEEeccCcc-CCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHH
Confidence 999999988888 77 588888887632 3333322 1 278999999999999999999999
Q ss_pred HHHHHHHHH-----cCcEEEEcccccccccCCC-CCccc-ccCCCcce---eEEEecCCcccCCccceeEEEEe---ecc
Q 013521 237 KKLVEFAKA-----NGSIIVYDSAYAAYITDPS-PRSIY-EIPGAREV---AIEISSFSKFAGFTGVRLGWTVV---PEE 303 (441)
Q Consensus 237 ~~i~~~a~~-----~~~~ii~De~~~~~~~~~~-~~~~~-~~~~~~~~---~i~i~S~SK~~~~~G~r~G~l~~---~~~ 303 (441)
++|+++|++ ||+++|+||+|.++.+++. +.++. .+++..++ +++++||||.+|++|+|+||+++ +++
T Consensus 212 ~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~ 291 (430)
T 2x5f_A 212 TTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQT 291 (430)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHH
T ss_pred HHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHH
Confidence 999999999 9999999999999887654 34555 55433566 89999999999999999999999 777
Q ss_pred ccccCCchhHHHHHHHHhh----hcCCCcHHHHHHHHHhcC-CCcH-HHHHHHHHHHHHHHHHHHHHHH----hCCCeee
Q 013521 304 LRYSNGYPVIKDFNRIVCT----CFNGASNIVQAGGLACLS-PDGF-QALRTVIDYYKENAKIIVDAFQ----SLGLKVN 373 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~l~-~~~~-~~~~~~~~~~~~~~~~l~~~L~----~~g~~~~ 373 (441)
+ .+.+...... .+.+++.+.|.++.++++ +..+ ++++++++.++++++.+.+.|+ +.|+.+.
T Consensus 292 ~--------~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~ 363 (430)
T 2x5f_A 292 T--------KEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAY 363 (430)
T ss_dssp H--------HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEEC
T ss_pred H--------HHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceee
Confidence 6 3555544443 456689999999999997 6533 4556699999999999999998 5688887
Q ss_pred CCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee-cCHHHHHHHHHHHHhhC
Q 013521 374 GGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF-GHREYISEACRRLKNFL 441 (441)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~~~~~~l~~l~~~l 441 (441)
++.+|+|+|+++++.+..++...+++++||.+.|| +++++||++. .+++++++++++|++++
T Consensus 364 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g------~~~~iRis~~~~~~e~i~~~~~~l~~~l 426 (430)
T 2x5f_A 364 DFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIAL------NATDIRIAFSCVEKDDIPHVFDSIAKAI 426 (430)
T ss_dssp CCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEEC------SSSEEEEEGGGSCGGGHHHHHHHHHHHH
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecC------CCCeEEEEEecCCHHHHHHHHHHHHHHH
Confidence 77778899999985566778888887569999997 3579999997 68899999999998753
No 17
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=100.00 E-value=2.8e-46 Score=366.84 Aligned_cols=344 Identities=22% Similarity=0.355 Sum_probs=277.5
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~a 147 (441)
+++++|+|+.|.|++++++.+.+++.+.+..... ....+|++..|..++|+++++|+.+ +.++++++|++|+|++++
T Consensus 33 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a 111 (398)
T 3ele_A 33 GKENVYDFSIGNPSIPAPQIVNDTIKELVTDYDS-VALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS 111 (398)
T ss_dssp CGGGCEECCSCCCCSCCCHHHHHHHHHHHHHSCH-HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred CCCCeEEeecCCCCCCCCHHHHHHHHHHHhcCCc-cccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence 3457999999999888899999999998875210 1156798888999999999999976 455789999999999999
Q ss_pred HHH-HHHhcCCC-CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEE
Q 013521 148 ISR-LQMLLGSN-VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFF 220 (441)
Q Consensus 148 l~~-l~~l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i 220 (441)
+.+ +..++++| |+|++++|+|+++...+...| .+++.++.+++ ++..+++. .+++++|++
T Consensus 112 l~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~~ 178 (398)
T 3ele_A 112 LSICFRALTSDAYDEFITIAPYFPEYKVFVNAAG------------ARLVEVPADTE-HFQIDFDALEERINAHTRGVII 178 (398)
T ss_dssp HHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECCCTT-TSSCCHHHHHHTCCTTEEEEEE
T ss_pred HHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcC------------CEEEEEecCCc-CCcCCHHHHHHHhCcCCCEEEE
Confidence 998 67778999 999999999999999999888 58999998754 44444322 357999999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHH------cCcEEEEcccccccccCCCCC-cccccCCCcceeEEEecCCcccCCccc
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKA------NGSIIVYDSAYAAYITDPSPR-SIYEIPGAREVAIEISSFSKFAGFTGV 293 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~------~~~~ii~De~~~~~~~~~~~~-~~~~~~~~~~~~i~i~S~SK~~~~~G~ 293 (441)
++||||||.++|.+++++|+++|++ ||+++|+||+|+++.+++.+. .+.. ..+++++++||||.+|++|+
T Consensus 179 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~---~~~~~i~~~s~sK~~~~~G~ 255 (398)
T 3ele_A 179 NSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTK---YYDNTLVCYSYSKSLSLPGE 255 (398)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGG---TCSSEEEEEESTTTSSCTTT
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHh---hcCCeEEEEehhhcCCCccc
Confidence 9999999999999999999999999 999999999999988865322 2222 24678999999999999999
Q ss_pred eeEEEEeeccccccCCchhHHHHHHHHhh-hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Q 013521 294 RLGWTVVPEELRYSNGYPVIKDFNRIVCT-CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV 372 (441)
Q Consensus 294 r~G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 372 (441)
|+||++++++++.. ..+.+.+...... .+.+++.+.|.++.+++.+.. .++.++++++.+.+.|+++|+.+
T Consensus 256 r~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~l~~~L~~~g~~~ 327 (398)
T 3ele_A 256 RIGYVLVPDEVYDK--AELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG------DINAYKENRDLLYEGLTRIGYHC 327 (398)
T ss_dssp CCEEEECCTTSTTH--HHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC------CHHHHHHHHHHHHHHHHHHTCCE
T ss_pred eeEEEEEcchhhhH--HHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHcCCee
Confidence 99999999886410 0112233332222 245577788888877776433 35788889999999999888888
Q ss_pred eCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 373 NGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
..+.+++|+|++++..+..++.+.+ +++||.+.||+.|+. ++++||+++.+++++++++++|++++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~--~~~iRis~~~~~e~i~~~l~~l~~~l 393 (398)
T 3ele_A 328 FKPDGAFYMFVKALEDDSNAFCEKA-KEEDVLIVAADGFGC--PGWVRISYCVDREMIKHSMPAFEKIY 393 (398)
T ss_dssp ECCSBSSEEEEECSSSCHHHHHHHH-HTTTEECEESGGGTC--TTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred cCCCeeEEEEEEcCCCCHHHHHHHH-HHCCEEEeCccccCC--CCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 8888888999999865666777655 566999999998864 57999999889999999999998763
No 18
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=9.5e-47 Score=368.66 Aligned_cols=341 Identities=21% Similarity=0.310 Sum_probs=284.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~al~ 149 (441)
++|+|+.|.+++++++.+.+++.+.+.. ...+|++..|..++|+++++|+.+ +.+++++ +|++|+|+++++.
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~ 105 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAHHVAQ-----GANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALY 105 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHh-----hccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHH
Confidence 5899999999888889999999998863 245787778999999999999976 4457788 9999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSP 223 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p 223 (441)
+ +..++++||.|++++|+|+++...++..| .+++.++.+.+ ++..+++. .+++++|++++|
T Consensus 106 ~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~l~~p 172 (386)
T 1u08_A 106 AAITALVRNGDEVICFDPSYDSYAPAIALSG------------GIVKRMALQPP-HFRVDWQEFAALLSERTRLVILNTP 172 (386)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECCTT-TCCCCHHHHHHHCCTTEEEEEEESS
T ss_pred HHHHHhCCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEeecCcc-cCcCCHHHHHHhhcccCEEEEEeCC
Confidence 8 56678999999999999999999998888 58888988653 23333321 367899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
|||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..+++..+++++++|+||.+|++|+|+||+++++
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 252 (386)
T 1u08_A 173 HNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA 252 (386)
T ss_dssp CTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCH
Confidence 99999999999999999999999999999999999887653 34554442224678999999999999999999999998
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVW 382 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 382 (441)
++ .+.+.........+.+.+.|.++.+++++. ..++++++++++++++.+.+.|+++|+++..+.+|+|+|
T Consensus 253 ~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~ 323 (386)
T 1u08_A 253 PI--------SAEIRKVHQYLTFSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLL 323 (386)
T ss_dssp HH--------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEE
T ss_pred HH--------HHHHHHHHHhhccCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceEEEE
Confidence 76 455655554445567888998888888743 467889999999999999999998899887777789999
Q ss_pred EEcCC---CChHHHHHHHHHhcCeEEeCCCCcCC--CCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 383 VQFPG---SSSWDVFAEILEKTHILTIPGSGFGP--GGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 383 ~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
++++. .+..++...+++++||.+.||+.|.. .+++++||++..+++++++++++|+++
T Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~ 386 (386)
T 1u08_A 324 VDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL 386 (386)
T ss_dssp EECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTTC
T ss_pred EecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhhC
Confidence 99985 35677878888777999999998864 357899999988999999999999763
No 19
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1.9e-46 Score=366.95 Aligned_cols=339 Identities=24% Similarity=0.399 Sum_probs=283.5
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
++++++|+.|.++++.|+.+.+++.+.+.. ...+|++..|..++|+++|+|+.+ +..+++++|++|+|+++++
T Consensus 40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al 114 (389)
T 1o4s_A 40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQK-----GEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQAL 114 (389)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHTT-----CCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHH
Confidence 457999999999888889999999998863 234787778999999999999976 4445889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..++++||+|++++|+|+++...++..| .+++.++.++++++..+++. .+++++|++++
T Consensus 115 ~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 182 (389)
T 1o4s_A 115 FNAFMALLDPGDEVIVFSPVWVSYIPQIILAG------------GTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINS 182 (389)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEES
T ss_pred HHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcC
Confidence 98 56678999999999999999999998888 58888988753344444321 25789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
|+||||.++|.+++++|+++|++||+++|+||+|+.+.+++.+.++..+++..+++++++||||.+|++|+|+||+++++
T Consensus 183 p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~ 262 (389)
T 1o4s_A 183 PNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE 262 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCH
Confidence 99999999999999999999999999999999999988765445666664335678999999999999999999999988
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVW 382 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 382 (441)
++ .+.+.........+++.+.|.++.+++++. ++++++.++++++.+.+.|+++|+++..+.+++++|
T Consensus 263 ~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 330 (389)
T 1o4s_A 263 KV--------ATAVSKIQSHTTSCINTVAQYAALKALEVD----NSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLF 330 (389)
T ss_dssp HH--------HHHHHHHHHHHTCSCCHHHHHHHHHHTTCC----CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEE
T ss_pred HH--------HHHHHHHhhhcccCCCHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHhcCCeeecCCcceEEE
Confidence 76 456665555555567889999999998754 478889999999999999998888887777788999
Q ss_pred EEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 383 VQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 383 ~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++++ .+..++.+++++++||.+.||..|+. ++++||++..+++++++++++|++++
T Consensus 331 ~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~--~~~~Ris~~~~~~~l~~~l~~l~~~l 386 (389)
T 1o4s_A 331 FKVR-GDDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFATSIERLTEALDRIEDFL 386 (389)
T ss_dssp EECS-SCHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred EeCC-CCHHHHHHHHHHHCCEEEeCchhcCC--CCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence 9997 45677888887566999999998874 46999999889999999999998763
No 20
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=1.9e-46 Score=365.86 Aligned_cols=344 Identities=21% Similarity=0.305 Sum_probs=286.2
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~t~G~~~al 148 (441)
++++|+|+.|++++++|+.+.+++.+.+.. ...+|++. ..++++++++++.+.++ +++++|++|+|+++++
T Consensus 23 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~ 95 (383)
T 3kax_A 23 NEELIHAWIADMDFEVPQPIQTALKKRIEH-----PIFGYTLP--PENIGDIICNWTKKQYNWDIQKEWIVFSAGIVPAL 95 (383)
T ss_dssp SSCCEECCCSSCSSCCCHHHHHHHHHHHHS-----CCCCCCCC--CTTHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred CCCeeecccccCCCCCCHHHHHHHHHHHhc-----CCCCCCCC--CHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHH
Confidence 468999999999999999999999998863 34567554 67899999999987444 7899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCC-ccCCCCC-----CCCccEEEEc
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENN-FFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~~-----~~~~~~v~i~ 221 (441)
.+ +..++++||+|+++.|+|+++...+...| .+++.++.+++++ +..+++. .+++++|+++
T Consensus 96 ~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~ 163 (383)
T 3kax_A 96 STSIQAFTKENESVLVQPPIYPPFFEMVTTNN------------RQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLC 163 (383)
T ss_dssp HHHHHHHCCTTCEEEECSSCCHHHHHHHHHTT------------CEEEECCCEEETTEEECCHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcC------------CEEEeccceecCCcEEEcHHHHHHHhCcCCeEEEEe
Confidence 97 67778999999999999999999999888 5888888865333 3344322 3689999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCC-CcceeEEEecCCcccCCccceeEEEE
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..+.. ..++++++.||||.+|++|+|+||++
T Consensus 164 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 243 (383)
T 3kax_A 164 SPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQASIII 243 (383)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhheEEE
Confidence 9999999999999999999999999999999999999887653 455655532 13678999999999999999999999
Q ss_pred eeccccccCCchhHHHHHHHHhh-hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeeCCC
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCT-CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GLKVNGGK 376 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~ 376 (441)
++++.+ .+.+...... ...+++.+.+.++.+++.+ ..+++++++++++++++.+.+.|++. ++.+..+.
T Consensus 244 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 315 (383)
T 3kax_A 244 IPNEKL-------RQAFTSIQYRQGFHGLNIFAYTAMQSAYTE-CNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPE 315 (383)
T ss_dssp CCCHHH-------HHHHHHHHHHTTCCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCS
T ss_pred eCCHHH-------HHHHHHHHhhcccCCCCHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC
Confidence 854332 4555544433 2346889999999898885 45678999999999999999999984 89888888
Q ss_pred CceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 377 NAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 377 ~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+++++|++++. .+..++...|++++||.+.||+.|+..+.+++||++..+++++++++++|++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 316 GSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGCPRSVLEEILNRLRHTF 382 (383)
T ss_dssp BSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 88899999973 567788888887779999999999887789999999889999999999998864
No 21
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=2.6e-46 Score=370.40 Aligned_cols=350 Identities=21% Similarity=0.347 Sum_probs=286.1
Q ss_pred CCCCeEEeCCCCCC----CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh-hCCCCCCcEEEcCCc
Q 013521 70 PDARLIRLGIGDTT----QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK-DMGIEGDEIFISDGA 144 (441)
Q Consensus 70 ~~~~~i~l~~g~~~----~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~~~~I~~t~G~ 144 (441)
+++++|+|+.|+|+ +++++.+.+++.+.+.. ....+|++..|..++|+++|+++.+ +..+++++|++|+|+
T Consensus 52 ~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~ 127 (427)
T 3dyd_A 52 PNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDS----GKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGC 127 (427)
T ss_dssp TTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHH----CCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred CCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhc----CcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence 34578999999975 57889999999998875 3456898888999999999999854 445789999999999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEE
Q 013521 145 QSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDII 218 (441)
Q Consensus 145 ~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v 218 (441)
++++.+ +..++++||+|+++.|+|+++...+...| .+++.++.++++++..+++ + .++++++
T Consensus 128 t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v 195 (427)
T 3dyd_A 128 SQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMG------------IEVKLYNLLPEKSWEIDLKQLEYLIDEKTACL 195 (427)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEEEEGGGTTEECHHHHHSSCCTTEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEecccccCCCCCHHHHHHHhccCCCEE
Confidence 999998 56778999999999999999999999998 5888888865444444432 1 2578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
++++||||||.++|.+++++|+++|++||+++|+||+|++|.+++. +.++..+.. ..++++++||||.|+++|+|+||
T Consensus 196 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~-~~~vi~~~S~sK~~~~~G~riG~ 274 (427)
T 3dyd_A 196 IVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLST-DVPILSCGGLAKRWLVPGWRLGW 274 (427)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCS-SCCEEEEEESTTTSSCGGGCCEE
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCC-CCcEEEEeeccccCCCcCcceEE
Confidence 9999999999999999999999999999999999999999887654 445555543 34579999999999999999999
Q ss_pred EEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCC
Q 013521 298 TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGK 376 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 376 (441)
++++++... ....+.+.+...... ..+++.+.|.++.+++++...+++++++++++++++.+.+.|+++ |+.+..+.
T Consensus 275 ~~~~~~~~~-~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~ 352 (427)
T 3dyd_A 275 ILIHDRRDI-FGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPS 352 (427)
T ss_dssp EEEECSTTS-SHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCS
T ss_pred EEecCcchh-hHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC
Confidence 999863100 000113444443333 356889999999999975456778999999999999999999998 88887778
Q ss_pred CceEEEEEcC------CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 377 NAPYVWVQFP------GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 377 ~~~~~~~~~~------~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+|+|+|++++ ..+..+++.++++++||.+.||+.|+. ++++||+++.+++++++++++|+++
T Consensus 353 ~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~--~~~iRis~~~~~e~i~~~l~~l~~~ 420 (427)
T 3dyd_A 353 GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVITVPEVMMLEACSRIQEF 420 (427)
T ss_dssp BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEESCSCHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC--CCeEEEEECCCHHHHHHHHHHHHHH
Confidence 8999999886 135678888888777999999998864 6899999988999999999999876
No 22
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=3.3e-46 Score=370.00 Aligned_cols=347 Identities=19% Similarity=0.302 Sum_probs=286.9
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~al~ 149 (441)
++|+|+.|.+++++++.+.+++.+.+.... ....+|++..|..++|+++++++.+ +.+++++ +|++|+|+++++.
T Consensus 38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~ 115 (429)
T 1yiz_A 38 KPLNLGQGFPDYHAPKYALNALAAAANSPD--PLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 115 (429)
T ss_dssp CCEECCSSSCSSCCCHHHHHHHHHHHTCSC--GGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhccc--cCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHH
Confidence 589999999988888999999999886421 2456788778999999999999976 4447788 9999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCC--------CccCCCCC-----CCCc
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPEN--------NFFPDLST-----TSRT 215 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~--------~~~~~~~~-----~~~~ 215 (441)
+ +..++++||+|+++.|+|+++...+...| .+++.++.+.++ ++..+++. .+++
T Consensus 116 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 183 (429)
T 1yiz_A 116 ATIQGHVDEGDEVIIIEPFFDCYEPMVKAAG------------GIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKT 183 (429)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTE
T ss_pred HHHHHhcCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEeCCcccccccccccCcccCHHHHHHHhccCc
Confidence 8 56678999999999999999999988888 588888887642 33334322 3678
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccce
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
++|++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..+++..++++++.|+||.+|++|+|
T Consensus 184 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r 263 (429)
T 1yiz_A 184 KMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWK 263 (429)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGC
T ss_pred eEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcc
Confidence 9999999999999999999999999999999999999999999887653 345555543457889999999999999999
Q ss_pred eEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC-----Cc-HHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP-----DG-FQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-----~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+||+++++++ ++.+.........+.+.+.|.++.+++++ .. ..++++.++.++++++.+.+.|+++
T Consensus 264 ~G~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 335 (429)
T 1yiz_A 264 IGWAYGPEAL--------LKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV 335 (429)
T ss_dssp CEEEESCHHH--------HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCHHH--------HHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999877 45666555545566889999988888875 32 3578899999999999999999988
Q ss_pred CCeeeCCCCceEEEEEcCCC-------------ChHHHHHHHHHhcCeEEeCCCCcCCC-----CCCeEEEEeecCHHHH
Q 013521 369 GLKVNGGKNAPYVWVQFPGS-------------SSWDVFAEILEKTHILTIPGSGFGPG-----GNEHIRVSAFGHREYI 430 (441)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ll~~~gi~v~pg~~f~~~-----~~~~iRls~~~~~~~~ 430 (441)
|+.+..+.+|+|+|++++.. +..++..++++++||.+.||+.|... ++++|||++..+++++
T Consensus 336 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i 415 (429)
T 1yiz_A 336 GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENL 415 (429)
T ss_dssp TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHH
T ss_pred CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHH
Confidence 88887777889999999742 34567777876779999999888642 2689999998899999
Q ss_pred HHHHHHHHhhC
Q 013521 431 SEACRRLKNFL 441 (441)
Q Consensus 431 ~~~l~~l~~~l 441 (441)
++++++|++++
T Consensus 416 ~~~l~~l~~~l 426 (429)
T 1yiz_A 416 QKAAEILRKWK 426 (429)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhc
Confidence 99999999864
No 23
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=4.3e-46 Score=364.21 Aligned_cols=342 Identities=24% Similarity=0.397 Sum_probs=284.5
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
++++++|+.|.++++.|+.+.+++.+.+.. ...+|++..|..++|+++++++.+ +..+++++|++|+|+++++
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 103 (388)
T 1j32_A 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQ-----GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence 467999999999888889999999998863 345788888999999999999976 4446789999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
.+ +..++++||+|++++|+|+++...++..| .+++.++.+.++++..+++. .+++++|++++
T Consensus 104 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 171 (388)
T 1j32_A 104 FNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAE------------GTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNT 171 (388)
T ss_dssp HHHHHHHCCTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHHhcCCCCEEEEcCCCChhHHHHHHHcC------------CEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeC
Confidence 98 56678999999999999999999988888 58888888753344444322 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCC-CcceeEEEecCCcccCCccceeEEEEe
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
|+||||.++|.+++++|+++|++||+++|+||+|+++.+++. +.++..++. ..++++++.|+||.+|++|+|+||+++
T Consensus 172 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~ 251 (388)
T 1j32_A 172 PSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG 251 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEe
Confidence 999999999999999999999999999999999999887653 345555532 135789999999999999999999999
Q ss_pred eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCce
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAP 379 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 379 (441)
++++ .+.+.........+++.+.|.++.++++. ..+++++++++++++++.+.+.|+++ |+++..+.+++
T Consensus 252 ~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 322 (388)
T 1j32_A 252 PVPL--------VKAATKIQGHSTSNVCTFAQYGAIAAYEN-SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAF 322 (388)
T ss_dssp CHHH--------HHHHHHHHHTTTCSCCHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTT
T ss_pred CHHH--------HHHHHHHHhhcccCCCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeE
Confidence 8876 45666555555566788999888888863 34678899999999999999999988 88887777788
Q ss_pred EEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 380 YVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 380 ~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
++|++++ +.+..++...+++++||.+.||..|+. ++++|+++..+++++++++++|+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~~~~~i~~~~~~l~~~ 383 (388)
T 1j32_A 323 YMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYATDLDTIKRGMERLEKF 383 (388)
T ss_dssp EECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCSCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCC--CCcEEEEecCCHHHHHHHHHHHHHH
Confidence 9999886 346677888888767999999998864 5789999988999999999999875
No 24
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.9e-46 Score=367.39 Aligned_cols=343 Identities=22% Similarity=0.313 Sum_probs=283.6
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCC-cEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGD-EIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~-~I~~t~G~~~al~ 149 (441)
++|+|+.|.+++++++.+.+++.+.+.. ...+|++..|..++|+++|+++.+ +.+++++ +|++|+|+++++.
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~ 100 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIAG-----GVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIA 100 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHH
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHH
Confidence 5899999999888889999999998864 245788888999999999999976 4446788 9999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC-CCccCCCCC-----CCCccEEEEcC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE-NNFFPDLST-----TSRTDIIFFCS 222 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~~-----~~~~~~v~i~~ 222 (441)
+ +..++++||+|++++|+|+++...+...| .+++.++.+.+ .++..+++. .+++++|++++
T Consensus 101 ~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~ 168 (411)
T 2o0r_A 101 AAVLGLVEPGSEVLLIEPFYDSYSPVVAMAG------------AHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINS 168 (411)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHhcCCCCEEEEeCCCcHhHHHHHHHcC------------CEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeC
Confidence 8 56678999999999999999999988888 57888887643 233333321 35789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
|+||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..++...++++++.|+||.+|++|+|+||++++
T Consensus 169 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 248 (411)
T 2o0r_A 169 PHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGP 248 (411)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeC
Confidence 999999999999999999999999999999999999887653 4566665444577899999999999999999999998
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEE
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYV 381 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 381 (441)
+++ .+.+.........+.+.+.|.++.++++.. .++++++++.++++++.+.+.|++.|+.+..+.+++|+
T Consensus 249 ~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~ 319 (411)
T 2o0r_A 249 AEL--------IAGVRAAKQYLSYVGGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFL 319 (411)
T ss_dssp HHH--------HHHHHHHHHHHTSCCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCBSSEE
T ss_pred HHH--------HHHHHHHHhhccCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCCeeEEE
Confidence 776 455555544444556778888888888633 56788999999999999999999888988777778899
Q ss_pred EEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCC-C----------CCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 382 WVQFPG---SSSWDVFAEILEKTHILTIPGSGFGP-G----------GNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 382 ~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~-~----------~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|++++. .+..++..++++++||.+.||+.|.. . +++++||+++.+++++++++++|++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~ 393 (411)
T 2o0r_A 320 CADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLA 393 (411)
T ss_dssp EEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHGGGG
T ss_pred EEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 999974 45677888888777999999998843 2 467899999888999999999998763
No 25
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=9.1e-46 Score=359.62 Aligned_cols=338 Identities=25% Similarity=0.412 Sum_probs=279.8
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
++++|+|+.|.++++.|+.+.+++.+.+.. ...+|++..|..++|+++|+|+.+ +..+++++|++|+|+++++
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 102 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKE-----GKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGL 102 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHHc-----CccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHH
Confidence 467999999999887789999999998863 345788778999999999999975 4457889999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCcc
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPT 227 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPt 227 (441)
.+ +..++++||+|++++|+|+++...+...| .+++.++.+.+ .+...+ .+++++|++++|||||
T Consensus 103 ~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~d~~-~l~~~l--~~~~~~v~~~~p~npt 167 (370)
T 2z61_A 103 FFALSSIIDDGDEVLIQNPCYPCYKNFIRFLG------------AKPVFCDFTVE-SLEEAL--SDKTKAIIINSPSNPL 167 (370)
T ss_dssp HHHHHHHCCTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECSSHH-HHHHHC--CSSEEEEEEESSCTTT
T ss_pred HHHHHHhcCCCCEEEEeCCCchhHHHHHHHcC------------CEEEEeCCCHH-HHHHhc--ccCceEEEEcCCCCCc
Confidence 98 56678999999999999999999998888 47777772211 111111 2478999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS 307 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~ 307 (441)
|.++|.+ |+++|++||+++|+||+|.++.+++.+.++..+++..+++++++||||.+|++|+|+||+++++++
T Consensus 168 G~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~--- 240 (370)
T 2z61_A 168 GEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEI--- 240 (370)
T ss_dssp CCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHH---
T ss_pred CcccCHH----HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHH---
Confidence 9999966 999999999999999999998876555566666444578899999999999999999999999877
Q ss_pred CCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC
Q 013521 308 NGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG 387 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 387 (441)
.+.+.........+++.+.|.++.++++..+..+++++++.++++++.+.+.|+++|+++..+.+++|+|++++.
T Consensus 241 -----~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 315 (370)
T 2z61_A 241 -----IEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIGE 315 (370)
T ss_dssp -----HHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCBTTEECCBCSS
T ss_pred -----HHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCcceEEEEecCC
Confidence 456666555555568899999888888631356788999999999999999999888888777778999999976
Q ss_pred CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 388 SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 388 ~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+..++...+++++||.+.||+.|+..+++++||++..+++++++++++|++++
T Consensus 316 -~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l 368 (370)
T 2z61_A 316 -DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFL 368 (370)
T ss_dssp -CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 66778888875679999999988754578999999889999999999998763
No 26
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.3e-46 Score=366.26 Aligned_cols=340 Identities=17% Similarity=0.254 Sum_probs=285.2
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~a 147 (441)
.++++|+|+.|++++++++.+.+++.+.+.. ...+|++ .+ .++|+++|+++.+ +..+++++|++|+|++++
T Consensus 21 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a 93 (377)
T 3fdb_A 21 YGQGVLPLWVAESDFSTCPAVLQAITDAVQR-----EAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRG 93 (377)
T ss_dssp SCTTSEECCSSCCCSCCCHHHHHHHHHHHHT-----TCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHH
T ss_pred cCCCeeeecccCCCCCCCHHHHHHHHHHHHc-----CCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHH
Confidence 3568999999999999999999999998863 3457877 67 8999999999975 444788999999999999
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEc
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC 221 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~ 221 (441)
+.+ +..++++||+|+++.|+|+++...+...| .+++.++.+.+ .+++. .+++++++++
T Consensus 94 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~----~d~~~l~~~l~~~~~~v~i~ 157 (377)
T 3fdb_A 94 LYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQ------------REGIFIDATGG----INLHDVEKGFQAGARSILLC 157 (377)
T ss_dssp HHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHT------------CCEEEEECTTS----CCHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcC------------CEEEEccCCCC----CCHHHHHHHhccCCCEEEEe
Confidence 998 67778999999999999999999999998 58899998764 33221 2468999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+||||||.++|.+++++|+++|++||+++|+||+|.++.+++ .+.++..+++ .+++++++||||.+|++|+|+||++
T Consensus 158 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~ 236 (377)
T 3fdb_A 158 NPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTA-ASVCITITAPSKAWNIAGLKCAQII 236 (377)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHH-HHHEEEEECSTTTTTCGGGCCEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccC-CCcEEEEEeChHhccCcchhheEEE
Confidence 999999999999999999999999999999999999988765 3445555432 5778999999999999999999998
Q ss_pred eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeeCCCC
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GLKVNGGKN 377 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~ 377 (441)
++++.+ .+.+.........+++.+.|.++.+++.+ ..+++++++++++++++.+.+.|+++ ++.+..+.+
T Consensus 237 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 308 (377)
T 3fdb_A 237 FSNPSD-------AEHWQQLSPVIKDGASTLGLIAAEAAYRY-GTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQA 308 (377)
T ss_dssp CCSHHH-------HHHHHHSCHHHHCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSB
T ss_pred eCCHHH-------HHHHHHHHHhhcCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCe
Confidence 854332 45565555555566899999988888874 35678999999999999999999985 899888888
Q ss_pred ceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 378 APYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 378 ~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++++|++++. ..+.+++..+++++||.+.||+.|+..+++++||++..+++++++++++|++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l~~l~~~l 373 (377)
T 3fdb_A 309 TYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAV 373 (377)
T ss_dssp CSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 8889999974 234577888888789999999999876789999999889999999999998763
No 27
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=100.00 E-value=1.9e-47 Score=387.73 Aligned_cols=391 Identities=18% Similarity=0.238 Sum_probs=293.1
Q ss_pred ccchhhhHHhhhhC--------------CC--CCccccccccccc---------------cccccCC-CCchHHHHHHHH
Q 013521 16 KATVPFTMDFFLSS--------------RW--PVPRHCTEVSRNV---------------NMESLQS-GYLFPEISMRES 63 (441)
Q Consensus 16 ~~Tv~~a~~~l~~~--------------g~--~~~~~g~~v~~~~---------------~~~~~~~-~~~~~~~~~~~~ 63 (441)
.-||++++.+|.++ +| ++|++|+||.... .+..++. .++|..+.+...
T Consensus 13 ~~~~~~~~~~~a~~~~~~~~l~~~~~np~~i~~~pr~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (546)
T 2zy4_A 13 PFELKDELIKIASSDGNRLMLNAGRGNPNFLATTPRRAFFRLGLFAAAESELSYSYMTTVGVGGLAKIDGIEGRFERYIA 92 (546)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHCCCCCSEEECHHHHHHHHHHHHHHHHHHTTCCSCCSSCEEECCCSTTHHHHHHHHHH
T ss_pred cHhhHHHHHHHHhhcccceeeeCCCCCchhhccChHHHHHHHHhhhhhhhhhhhhhhhhhhhccCCccccchhHHHHHHH
Confidence 56899999999999 88 9999999997421 1111121 255655554443
Q ss_pred HHHhcCCCC----CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHh-hhC--CC---
Q 013521 64 EHIRKHPDA----RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFY-KDM--GI--- 133 (441)
Q Consensus 64 ~~~~~~~~~----~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~-~~~--~~--- 133 (441)
... ..++. .+++|++|.+++ +++.+.+++.+.+.. .+|+++.|..++|+++++++. ++. ++
T Consensus 93 ~~~-~~~~~~~l~~~i~l~~g~~~~-~~~~~~~al~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~ 163 (546)
T 2zy4_A 93 ENR-DQEGVRFLGKSLSYVRDQLGL-DPAAFLHEMVDGILG-------CNYPVPPRMLNISEKIVRQYIIREMGADAIPS 163 (546)
T ss_dssp HTT-TCHHHHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHT-------CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCG
T ss_pred hcC-CCCcchhHHhhhecccCCCCC-CChHHHHHHHHhhhc-------CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCC
Confidence 221 11111 278999999877 446666777776531 479888899999999888764 332 22
Q ss_pred CCCcEEEcCCcHHHHHHH-HH-----hcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccC
Q 013521 134 EGDEIFISDGAQSDISRL-QM-----LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFP 207 (441)
Q Consensus 134 ~~~~I~~t~G~~~al~~l-~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~ 207 (441)
++++|++|+|+++++.++ .. ++++||.|++++|+|+++...+...+. | .+++.++.+++++|..
T Consensus 164 ~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~-g---------~~~~~v~~~~~~~~~~ 233 (546)
T 2zy4_A 164 ESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQY-A---------LEEVAINADPSLNWQY 233 (546)
T ss_dssp GGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTS-C---------CEEEEEECBGGGTTBC
T ss_pred CcceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCC-C---------cEEEEEecCcccCCCC
Confidence 468999999999999984 44 478999999999999999887654431 1 4788888887666666
Q ss_pred CCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHH--HHcCcEEEEcccccccccCCCCCcccccCCCcceeEE
Q 013521 208 DLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFA--KANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIE 280 (441)
Q Consensus 208 ~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a--~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~ 280 (441)
+++. .+++++|++||||||||.++|.+++++|+++| +++|++||+||+|+++.++ +.++.... ++++|+
T Consensus 234 d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~--~~s~~~~~--~~~~i~ 309 (546)
T 2zy4_A 234 PDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD--FQSLFAIC--PENTLL 309 (546)
T ss_dssp CHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT--CCCHHHHC--GGGEEE
T ss_pred CHHHHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc--CcCHHHhC--CCCEEE
Confidence 5432 36789999999999999999999999999999 7899999999999988753 45565552 468999
Q ss_pred EecCCcccCCccceeEEEEeecc-ccccCCchhHHHHH-------------HHH-----------------------hhh
Q 013521 281 ISSFSKFAGFTGVRLGWTVVPEE-LRYSNGYPVIKDFN-------------RIV-----------------------CTC 323 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l~~~~~-~~~~~~~~~~~~~~-------------~~~-----------------------~~~ 323 (441)
++||||.+|++|+|+||++++++ ++ +.+. .+. ...
T Consensus 310 ~~S~SK~~g~~GlRiG~~~~~~~~l~--------~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 381 (546)
T 2zy4_A 310 VYSFSKYFGATGWRLGVVAAHQQNVF--------DLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNH 381 (546)
T ss_dssp EEESTTTTTCGGGCEEEEEEESSCHH--------HHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGG
T ss_pred EEeCccccCCCCcceEEEEECCHHHH--------HHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhc
Confidence 99999999999999999999886 42 2221 000 122
Q ss_pred cCCCcHHHHHHH-----HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC-----------
Q 013521 324 FNGASNIVQAGG-----LACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG----------- 387 (441)
Q Consensus 324 ~~~~~~~~~~a~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~----------- 387 (441)
..+++.+.|.++ .+++.+ +..+.+.+++.|+++++.+.+.|. .++.+.++.+++|+|++++.
T Consensus 382 ~~~~s~~~Q~a~a~~a~~all~~-~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 459 (546)
T 2zy4_A 382 TAGLSTPQQVQMALFSLFALMDE-ADEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFS 459 (546)
T ss_dssp GCSSCHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHH
Confidence 345788888763 244543 346789999999999999999986 55655666789999999852
Q ss_pred ------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 388 ------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 388 ------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
.++.+++.++++++||.+.||+.|+. ++++|||+++. +++++++++++|+++
T Consensus 460 ~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~-~~~~iRis~~~~~~e~i~~~~~~l~~~ 518 (546)
T 2zy4_A 460 EWAVKQSSTGDMLFRIADETGIVLLPGRGFGS-NRPSGRASLANLNEYEYAAIGRALRKM 518 (546)
T ss_dssp HHHHHHCCHHHHHHHHHHHHSCCCEESSCTTC-SSCEEEEESSSSCHHHHHHHHHHHHHH
T ss_pred HHhhccCCHHHHHHHHHHHCCEEEeCccccCC-CCCeEEEEeccCCHHHHHHHHHHHHHH
Confidence 13456667777788999999999976 56899999976 789999999999875
No 28
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=5.1e-46 Score=365.99 Aligned_cols=341 Identities=25% Similarity=0.380 Sum_probs=283.2
Q ss_pred CCCeEEeCCCCC---CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcH
Q 013521 71 DARLIRLGIGDT---TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~---~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~ 145 (441)
++++++|+.|.+ +++.++.+.+++.+.+.. ...+|++..|..++|+++|+|+.+ ++++++++|++|+|++
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~ 111 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKE-----GHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVT 111 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHT-----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHH
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhc-----CCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChH
Confidence 467899999998 778889999999998863 234688778999999999999975 5567889999999999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEE
Q 013521 146 SDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIF 219 (441)
Q Consensus 146 ~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~ 219 (441)
+++.+ +..++++||+|++++|+|+++...+...| .+++.++.++++++..+++. .+++++|+
T Consensus 112 ~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~ 179 (406)
T 1xi9_A 112 EALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYG------------GKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIA 179 (406)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcC------------CEEEEeecCCCcCCcCCHHHHHHhhCcCceEEE
Confidence 99998 56678999999999999999999998888 58888888653344334221 25789999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcce-eEEEecCCcccCCccceeEEE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREV-AIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~-~i~i~S~SK~~~~~G~r~G~l 298 (441)
+++|+||||.++|.+++++|+++|++||++||+||+|.++.+++.+.++..++ +++ +++++||||.+|++|+|+||+
T Consensus 180 i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~ 257 (406)
T 1xi9_A 180 VINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT--KDVPVIVMNGLSKVYFATGWRLGYM 257 (406)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC--SSSCEEEEEESTTTTCCGGGCCEEE
T ss_pred EECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC--CCceEEEEeccccccCCCccEEEEE
Confidence 99999999999999999999999999999999999999988754445666663 567 899999999999899999999
Q ss_pred E--eec----cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 013521 299 V--VPE----ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLK 371 (441)
Q Consensus 299 ~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 371 (441)
+ +++ ++ ++.+....... .+++.+.|.++.++++.. .++++++++.++++++.+.+.|+++ ++.
T Consensus 258 ~~~~~~~~~~~l--------~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 327 (406)
T 1xi9_A 258 YFVDPENKLSEV--------REAIDRLARIR-LCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLNEIPGIS 327 (406)
T ss_dssp EEECTTCTTHHH--------HHHHHHHHHHT-CCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred EEecCchhHHHH--------HHHHHHHHHhh-cCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 9 887 55 45555544444 567888999888888533 4557889999999999999999988 888
Q ss_pred eeCCCCceEEEEEcC---CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 372 VNGGKNAPYVWVQFP---GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 372 ~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+..+.+++++|++++ +.+..++...+++++||.+.||..|+..+++++||++..+++++++++++|+++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~~l~~~ 399 (406)
T 1xi9_A 328 TTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKF 399 (406)
T ss_dssp CCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHH
T ss_pred eecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHHHHHHH
Confidence 877777889998887 346677888887566999999998876557899999988899999999999875
No 29
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=8e-46 Score=364.50 Aligned_cols=344 Identities=16% Similarity=0.242 Sum_probs=285.8
Q ss_pred CeEEeCCCCCC-CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCC-CcEEEcCCcHHHH
Q 013521 73 RLIRLGIGDTT-QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEG-DEIFISDGAQSDI 148 (441)
Q Consensus 73 ~~i~l~~g~~~-~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~-~~I~~t~G~~~al 148 (441)
.+|||+.|++. +++++.+.+++.+.+.. ....+|++..|..++++++++++.+ +..+++ ++|++|+|+++++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~ 115 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQS----GGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGAL 115 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHH----THHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhc----CCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHH
Confidence 48999999876 78889999999998875 2344688888999999999999976 444445 7999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC----CCCccCCCCC-----CCCccEE
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP----ENNFFPDLST-----TSRTDII 218 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~----~~~~~~~~~~-----~~~~~~v 218 (441)
.+ +..++++||+|+++.|+|+++...++..| .+++.++.+. +.++..+++. ..++++|
T Consensus 116 ~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v 183 (407)
T 3nra_A 116 FLAVAATVARGDKVAIVQPDYFANRKLVEFFE------------GEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVF 183 (407)
T ss_dssp HHHHHTTCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEE
T ss_pred HHHHHHhCCCCCEEEEcCCcccchHHHHHHcC------------CEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEE
Confidence 98 56778999999999999999999999998 5888888842 1233334332 2478999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccC-CCcceeEEEecCCcccCCccceeE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIP-GAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~-~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
++++||||||.++|.+++++|+++|++||+++|+||+|+.+.+++. +.++..++ ...+++++++||||.+|++|+|+|
T Consensus 184 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G 263 (407)
T 3nra_A 184 LFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLG 263 (407)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCE
T ss_pred EEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEE
Confidence 9999999999999999999999999999999999999999887654 44555554 446789999999999999999999
Q ss_pred EEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCC
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGG 375 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 375 (441)
|+++++++ ++.+.........+++.+.|.++.+++++ ...++++.+++++++++.+.+.|+++ ++.+..+
T Consensus 264 ~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 334 (407)
T 3nra_A 264 VAFGSRAI--------IARMEKLQAIVSLRAAGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRGCEGVFARTP 334 (407)
T ss_dssp EEEECHHH--------HHHHHHHHHHHTSSSCHHHHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCC
T ss_pred EEEcCHHH--------HHHHHHHHhhhccCCChHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCceeccC
Confidence 99998877 45666655555566788888888888863 33567888899999999999999988 8888777
Q ss_pred CCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 376 KNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 376 ~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.+++|+|++++. .+..++...|++++||.+.||+.|++.+.+++||++..+++++++++++|++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~ 402 (407)
T 3nra_A 335 QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLV 402 (407)
T ss_dssp SBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 788999999974 466778888877779999999999887889999999889999999999998763
No 30
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=100.00 E-value=3.2e-46 Score=365.23 Aligned_cols=333 Identities=16% Similarity=0.165 Sum_probs=256.6
Q ss_pred CCCeEEeCCCCC---C--CCCcHHHHHHHHHHH-hhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh--CCCCCCc--EEE
Q 013521 71 DARLIRLGIGDT---T--QPIPDIITSAMAEHA-FALSTVKGYKGYGAEQGNMALRTAIADKFYKD--MGIEGDE--IFI 140 (441)
Q Consensus 71 ~~~~i~l~~g~~---~--~~~~~~~~~al~~~~-~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~--~~~~~~~--I~~ 140 (441)
.+++|||++|.+ + .++++.+.+++. .+ .. ...++|++..|.++||+++++|+.+. ..+++++ |++
T Consensus 28 ~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~ 102 (405)
T 3k7y_A 28 CEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTEN----YKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQ 102 (405)
T ss_dssp CSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHH----CCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEE
T ss_pred CcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCC----CCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEE
Confidence 357999999973 2 345778888776 43 22 45678999999999999999999652 2345664 699
Q ss_pred cCCcHHHHHH-HHHhcC--CCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC------
Q 013521 141 SDGAQSDISR-LQMLLG--SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------ 211 (441)
Q Consensus 141 t~G~~~al~~-l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------ 211 (441)
|+|+++|+.+ +..+++ | |+|++++|+|++|...++..| .+++.+++.+++++..|++.
T Consensus 103 t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~ 169 (405)
T 3k7y_A 103 CIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRG------------FNLKYINFFDYNLIDINYDLFLNDLR 169 (405)
T ss_dssp EEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTT------------CEEEEECCEETTTTEECHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcC------------CeEEEEeccccccCCcCHHHHHHHHH
Confidence 9999999998 455666 8 999999999999999999999 58999988433345555332
Q ss_pred -CCCccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC---CCcccccCCCcceeEEEecCCc
Q 013521 212 -TSRTDIIFFCSP-NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS---PRSIYEIPGAREVAIEISSFSK 286 (441)
Q Consensus 212 -~~~~~~v~i~~p-~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~---~~~~~~~~~~~~~~i~i~S~SK 286 (441)
.++++++++++| |||||.+++.+++++|+++|++||++||+||+|.+|.+++. +.++..+....+++|+++||||
T Consensus 170 ~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 249 (405)
T 3k7y_A 170 NIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSK 249 (405)
T ss_dssp HSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTT
T ss_pred hCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCc
Confidence 245688888765 99999999999999999999999999999999999987632 1233333333478999999999
Q ss_pred ccCCccceeEEEEee---ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc----H-HHHHHHHHHHHHHH
Q 013521 287 FAGFTGVRLGWTVVP---EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG----F-QALRTVIDYYKENA 358 (441)
Q Consensus 287 ~~~~~G~r~G~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~~ 358 (441)
+|+++|+|+||++++ ++++. .+.+.+.......+.+++.+.|.++.+++.+.. + ++++.+++.|+++|
T Consensus 250 ~~~l~GlRiG~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R 325 (405)
T 3k7y_A 250 NMSLYGERAGALHIVCKNQEEKK----IVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNR 325 (405)
T ss_dssp TSCCTTTTEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccceEEEEEeCCHHHHH----HHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999752 33310 011223333344555677899988888887532 2 56788889999999
Q ss_pred HHHHHHHH----hCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHH
Q 013521 359 KIIVDAFQ----SLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREY 429 (441)
Q Consensus 359 ~~l~~~L~----~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~ 429 (441)
+.+.+.|+ ++| +.+.++++|+|+|++++. +++.+| +++||.+.||. |||++. ++++
T Consensus 326 ~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~----~~~~~L-~~~gV~v~p~~----------Ris~a~~~~~~ 390 (405)
T 3k7y_A 326 ILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA----KIAEHL-KTHHIYIINNG----------RINVSGITKNN 390 (405)
T ss_dssp HHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG----GGTTTT-TTTTEECCTTS----------EEEGGGCCTTH
T ss_pred HHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH----HHHHHH-HHCCEeecCCC----------eEEEeccCHHH
Confidence 99999999 776 577788899999998863 455666 78899999952 999965 7899
Q ss_pred HHHHHHHHHhh
Q 013521 430 ISEACRRLKNF 440 (441)
Q Consensus 430 ~~~~l~~l~~~ 440 (441)
+++++++|+++
T Consensus 391 i~~~~~~i~~~ 401 (405)
T 3k7y_A 391 VDYIADKICLS 401 (405)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 31
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=1.9e-45 Score=359.87 Aligned_cols=343 Identities=17% Similarity=0.276 Sum_probs=285.9
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh--CCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD--MGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~--~~~~~~~I~~t~G~~~al 148 (441)
++++|+|+.|++++++|+.+.+++.+.+.+ ...+|++. ..++++++++++.+. ..+++++|++|+|+++++
T Consensus 26 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~ 98 (391)
T 3dzz_A 26 KEKELPMWIAEMDFKIAPEIMASMEEKLKV-----AAFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAI 98 (391)
T ss_dssp CTTCEECCSSCCSSCCCHHHHHHHHHHHTT-----CCCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhc-----CcCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHH
Confidence 357999999999999999999999998863 34567554 689999999999864 447899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC-CCCccCCCCC------CCCccEEEE
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP-ENNFFPDLST------TSRTDIIFF 220 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~~~------~~~~~~v~i 220 (441)
.+ +..++++||+|+++.|+|+++...+...| .+++.++.+. ++.+..+++. .+++++|++
T Consensus 99 ~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i 166 (391)
T 3dzz_A 99 SAMVRQFTSPGDQILVQEPVYNMFYSVIEGNG------------RRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVF 166 (391)
T ss_dssp HHHHHHHSCTTCEEEECSSCCHHHHHHHHHTT------------CEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEE
T ss_pred HHHHHHhCCCCCeEEECCCCcHHHHHHHHHcC------------CEEEEeeeeecCCceeecHHHHHHHHhccCceEEEE
Confidence 97 67778999999999999999999999888 5888888862 3333344322 268999999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccccCC-CcceeEEEecCCcccCCccceeEEE
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++||||||.++|.+++++|+++|++||+++|+||+|+++.+.+ .+.++..+.. .+++++++.|+||.+|++|+|+||+
T Consensus 167 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~ 246 (391)
T 3dzz_A 167 CNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACA 246 (391)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEE
T ss_pred ECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEE
Confidence 9999999999999999999999999999999999999988765 3556666532 2578999999999999999999999
Q ss_pred Eee-ccccccCCchhHHHHHHHHh-hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeeC
Q 013521 299 VVP-EELRYSNGYPVIKDFNRIVC-TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-L-GLKVNG 374 (441)
Q Consensus 299 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~ 374 (441)
+++ +++ .+.+..... ....+++.+.+.++.+++.+ ...++++++++++++++.+.+.|++ + |+.+..
T Consensus 247 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 317 (391)
T 3dzz_A 247 IIPNPDL--------RARAEESFFLAGIGEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLD 317 (391)
T ss_dssp ECCSHHH--------HHHHHHHHHHHTCSSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC
T ss_pred EECCHHH--------HHHHHHHHHhhccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec
Confidence 998 555 455554433 33445788888888888874 4567899999999999999999998 4 899888
Q ss_pred CCCceEEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 375 GKNAPYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+.+++++|++++ +.+..++.+.+++++||.+.||+.|+..+++++||++..+++++++++++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 386 (391)
T 3dzz_A 318 SNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQGV 386 (391)
T ss_dssp CCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred cCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 888889999997 3567788888876679999999999877789999999889999999999998763
No 32
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1.1e-44 Score=356.72 Aligned_cols=340 Identities=21% Similarity=0.321 Sum_probs=281.2
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
++++++|+.|.++++.++.+.+++ +.+. ....+|++..|..++|+++|+|+.+ ++++++++|++|+|+++++
T Consensus 42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~-----~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 42 GVRIHHLNIGQPDLKTPEVFFERI-YENK-----PEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHH-HHTC-----CSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred CCCEEeccCCCCCCCCCHHHHHHH-HHHh-----cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 467999999999887888899999 7764 2345788778999999999999975 4457789999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCcc-C-CCCC--CCCccEEEEcCC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFF-P-DLST--TSRTDIIFFCSP 223 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~-~-~~~~--~~~~~~v~i~~p 223 (441)
.+ +..++++||+|+++.|+|+++...+...| .+++.++.++++++. + ++++ .+++++|++++|
T Consensus 116 ~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~v~~~~p 183 (409)
T 2gb3_A 116 LFSFAVIANPGDEILVLEPFYANYNAFAKIAG------------VKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNP 183 (409)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTHHHHHHHHHT------------CEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESS
T ss_pred HHHHHHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEeccCCCCCCccHHHHHHhhCcCCeEEEECCC
Confidence 98 66778999999999999999999998888 588888887533443 2 2322 257899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec-
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE- 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~- 302 (441)
+||||.++|.+++++|+++|++||+++|+||+|+.+.+++.+.++ +.+..+++++++||||.+|++|+|+||+++++
T Consensus 184 ~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~--~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 261 (409)
T 2gb3_A 184 CNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA--LSIESDKVVVIDSVSKKFSACGARVGCLITRNE 261 (409)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG--GGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc--cccCCCCEEEEecchhccCCccceEEEEEECcH
Confidence 999999999999999999999999999999999988776544443 22224568999999999999999999999998
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee-eCCCCceEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV-NGGKNAPYV 381 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~ 381 (441)
++ .+.+........ +++.+.|.++.++++. +..+++++++.++++++.+.+.|+++|+.+ ..+.+++++
T Consensus 262 ~l--------~~~l~~~~~~~~-~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 331 (409)
T 2gb3_A 262 EL--------ISHAMKLAQGRL-APPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYI 331 (409)
T ss_dssp HH--------HHHHHHHHHHSC-CCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEE
T ss_pred HH--------HHHHHHHHhccC-CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCCeeEEE
Confidence 66 455555444444 6889999999999974 456788999999999999999999888887 666778999
Q ss_pred EEEcCCCChHHHHHHHHHh-----cCeEEeCCCCcCC---CCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 382 WVQFPGSSSWDVFAEILEK-----THILTIPGSGFGP---GGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 382 ~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~---~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
|+++++.+..++...++++ +||.+.||..|+. .+++++||++..+++++++++++|+++
T Consensus 332 ~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~ 398 (409)
T 2gb3_A 332 TAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEG 398 (409)
T ss_dssp EEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHH
Confidence 9999755667788888776 5999999998864 347899999988899999999999875
No 33
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=100.00 E-value=6.6e-45 Score=359.18 Aligned_cols=346 Identities=21% Similarity=0.331 Sum_probs=278.5
Q ss_pred CCeEEeCCCCC----CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHh-------h-hCCCCCCcEE
Q 013521 72 ARLIRLGIGDT----TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFY-------K-DMGIEGDEIF 139 (441)
Q Consensus 72 ~~~i~l~~g~~----~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~-------~-~~~~~~~~I~ 139 (441)
.++|+|+.|.| ++++++.+.+++.+.+.. ....+|++..|..++|+++|+|+. + +..+++++|+
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~ 108 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDS----QECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV 108 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHT----TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhC----CccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEE
Confidence 46899999986 467889999999998864 334578877899999999999997 3 4447889999
Q ss_pred EcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC
Q 013521 140 ISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS 213 (441)
Q Consensus 140 ~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~ 213 (441)
+|+|+++++.+ +..++++||+|++++|+|+++...+...| .+++.++.++++++..+++. .+
T Consensus 109 ~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~ 176 (416)
T 1bw0_A 109 LCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYG------------IGMHFYNCRPENDWEADLDEIRRLKDD 176 (416)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTT------------CEEEEEEEEGGGTTEECHHHHHHHCCT
T ss_pred EeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcC------------cEEEEeecCcccCCCCCHHHHHHHhcc
Confidence 99999999997 66778999999999999999999998888 58888887654344444322 25
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-----CCcccccCCCcceeEEEecCCccc
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-----PRSIYEIPGAREVAIEISSFSKFA 288 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-----~~~~~~~~~~~~~~i~i~S~SK~~ 288 (441)
+++++++++|+||||.++|.+++++|+++|++||++||+||+|.++.+++. ..++..++. .+++++++||||.+
T Consensus 177 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~ 255 (416)
T 1bw0_A 177 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFET-TVPRVILGGTAKNL 255 (416)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCC-SCCEEEEEESTTTT
T ss_pred CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccC-CCcEEEEecchhhC
Confidence 788999999999999999999999999999999999999999999877643 334444432 34689999999999
Q ss_pred CCccceeEEEEeecc--ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 013521 289 GFTGVRLGWTVVPEE--LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 289 ~~~G~r~G~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
+++|+|+||++++++ ++. .+...+..... ...+++.+.|.++.++++.....++++.+++++++++.+.+.|+
T Consensus 256 ~~~Glr~G~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 330 (416)
T 1bw0_A 256 VVPGWRLGWLLYVDPHGNGP----SFLEGLKRVGM-LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIG 330 (416)
T ss_dssp SCGGGCCEEEEEECTTCSCH----HHHHHHHHHHH-HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEEEeeCchhhHH----HHHHHHHHHhc-cccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999875 421 01112222211 23457889999999988754456788999999999999999999
Q ss_pred hC-CCeeeCCCCceEEEEEcCC------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 367 SL-GLKVNGGKNAPYVWVQFPG------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 367 ~~-g~~~~~~~~~~~~~~~~~~------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
++ |+.+..+.+|+|+|++++. .+..++...+++++||.+.||+.|+. ++++||++..+++++++++++|.+
T Consensus 331 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~iRis~~~~~e~l~~~l~~l~~ 408 (416)
T 1bw0_A 331 ECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTTRPVEVYREAVERIKA 408 (416)
T ss_dssp TSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCSCHHHHHHHHHHHHH
T ss_pred hCCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC--CCeEEEEecCCHHHHHHHHHHHHH
Confidence 87 8887766779999999862 35667778887677999999998864 579999998789999999999987
Q ss_pred hC
Q 013521 440 FL 441 (441)
Q Consensus 440 ~l 441 (441)
++
T Consensus 409 ~l 410 (416)
T 1bw0_A 409 FC 410 (416)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 34
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=1.7e-45 Score=365.65 Aligned_cols=351 Identities=18% Similarity=0.152 Sum_probs=284.3
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al 148 (441)
++++|+|+.|++++++++.+.+++.+.+.. ....+|++..|..++|+++|+++.+ +..+++++|++|+|+++++
T Consensus 43 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al 118 (437)
T 3g0t_A 43 GTKFCRMEMGVPGLPAPQIGIETEIQKLRE----GVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGC 118 (437)
T ss_dssp TCCCEECCCCSCCSCCCHHHHHHHHHHHHH----TGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred CCCEEeccCcCCCCCCCHHHHHHHHHHHhC----CcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHH
Confidence 467999999999999999999999998874 2336798888999999999999975 5557889999999999999
Q ss_pred HH-HHHhc--CCCC--EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C---CCCccE
Q 013521 149 SR-LQMLL--GSNV--TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T---TSRTDI 217 (441)
Q Consensus 149 ~~-l~~l~--~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~---~~~~~~ 217 (441)
.+ +..++ ++|| +|+++.|+|+++...+...| .+++.+++++ +++..|++ + .+++++
T Consensus 119 ~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~~ 185 (437)
T 3g0t_A 119 FVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILG------------QKFESFDLFE-YRGEKLREKLESYLQTGQFCS 185 (437)
T ss_dssp HHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHT------------CCCEEEEGGG-GCTTHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcC------------CEEEEEeecC-CCCccCHHHHHHHHhcCCceE
Confidence 98 56777 9999 99999999999999999998 5888999874 34333322 1 368999
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc-------cccCCCcceeEEEecCCcccCC
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI-------YEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~-------~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
|++++||||||.++|.+++++|+++|++||++||+||+|+++.+++ ..++ ..+++..+++++++|+||.+|+
T Consensus 186 v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 264 (437)
T 3g0t_A 186 IIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRK-DYSHPGEPLYQPSVANYTDNYILALSSSKAFSY 264 (437)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTS-CCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSC
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCC-CcCcccccchhhccCCCCCcEEEEEcCccCCCC
Confidence 9999999999999999999999999999999999999999887763 2223 4444346788999999999999
Q ss_pred ccceeEEEEeeccccccCCchhHHH----------HHHHHhhhcCCCcHHHHHHHHHhcCCCc-H-HHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVVPEELRYSNGYPVIKD----------FNRIVCTCFNGASNIVQAGGLACLSPDG-F-QALRTVIDYYKENA 358 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~-~~~~~~~~~~~~~~ 358 (441)
+|+|+||++++++++......+... +.........+++.+.|.++.+++++.. + .+++++++++++++
T Consensus 265 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 344 (437)
T 3g0t_A 265 AGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKA 344 (437)
T ss_dssp GGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred ccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHH
Confidence 9999999999987742000000000 4444444455688999999998887421 1 12789999999999
Q ss_pred HHHHHHHHhCCCeee-------CCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHH
Q 013521 359 KIIVDAFQSLGLKVN-------GGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYI 430 (441)
Q Consensus 359 ~~l~~~L~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~ 430 (441)
+.+.+.|+++|+.+. ++.+++|+|+++++.+..++.+.|+++ ||.+.||..|+...++++||+++. +++++
T Consensus 345 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~v~~~~~~~~~~~~~iRis~~~~~~e~i 423 (437)
T 3g0t_A 345 RIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRY-GMCAITLKTTGSKRNEAMRICTSLLPESQF 423 (437)
T ss_dssp HHHHHHHHTTTEEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHT-TEECEESTTTTCCCTTCEEEECSSSCGGGH
T ss_pred HHHHHHHHHcCCEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHc-CeEEeeccccCCCCCCEEEEEEecCCHHHH
Confidence 999999999888887 337899999999866777888887765 999999998876555889999865 88999
Q ss_pred HHHHHHHHhh
Q 013521 431 SEACRRLKNF 440 (441)
Q Consensus 431 ~~~l~~l~~~ 440 (441)
++++++|+++
T Consensus 424 ~~~~~~l~~~ 433 (437)
T 3g0t_A 424 PDLEKRLQML 433 (437)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 35
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=100.00 E-value=1.4e-45 Score=364.91 Aligned_cols=341 Identities=20% Similarity=0.309 Sum_probs=267.9
Q ss_pred CCeEEeCCCCCCCCCcHH-HH-HHH---------HHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC------
Q 013521 72 ARLIRLGIGDTTQPIPDI-IT-SAM---------AEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE------ 134 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~-~~-~al---------~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~------ 134 (441)
+++|+|+.|.|+...++. .+ .++ .+.. ....+|++..|..+||+++++++.+..+++
T Consensus 31 ~~~i~l~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~ 104 (425)
T 2r2n_A 31 KSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMM------KRALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPP 104 (425)
T ss_dssp TTCEECCCCCCCGGGCSEEEEEEEETTSCCEEECHHHH------HHHTSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCG
T ss_pred CCeEEcCCcCCCchhCCHHHHHHHHhhcccccccccch------hhhcCCCCCCCCHHHHHHHHHHHHHhcCCCCccccc
Confidence 468999999987542221 00 000 0001 112469899999999999999997644443
Q ss_pred ---CCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-C
Q 013521 135 ---GDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-L 209 (441)
Q Consensus 135 ---~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~ 209 (441)
+++|++|+|+++++.+ +..++++||+|++++|+|+++...++..| .+++.++.+.+ +++++ +
T Consensus 105 ~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-~~d~~~l 171 (425)
T 2r2n_A 105 SQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLG------------CNIINVASDES-GIVPDSL 171 (425)
T ss_dssp GGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGT------------CEEEEECEETT-EECHHHH
T ss_pred cCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcC------------CEEEEeCcCCC-CCCHHHH
Confidence 3699999999999998 67778999999999999999999998888 58888888653 33222 1
Q ss_pred CC--------------CCCccEEEE-cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCC
Q 013521 210 ST--------------TSRTDIIFF-CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPG 273 (441)
Q Consensus 210 ~~--------------~~~~~~v~i-~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~ 273 (441)
++ .+++++|++ ++||||||.++|.+++++|+++|++||++||+||+|+++.+++. +.++..++
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~- 250 (425)
T 2r2n_A 172 RDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMD- 250 (425)
T ss_dssp HHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGC-
T ss_pred HHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccC-
Confidence 11 136888877 48999999999999999999999999999999999999887653 45666664
Q ss_pred CcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC---CcH-HHHHH
Q 013521 274 AREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP---DGF-QALRT 349 (441)
Q Consensus 274 ~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~-~~~~~ 349 (441)
..+++++++||||+++ +|+|+||+++++++ ++.+.........+++.+.|.++.+++++ .++ +++++
T Consensus 251 ~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l--------~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 321 (425)
T 2r2n_A 251 VDGRVIRADSFSKIIS-SGLRIGFLTGPKPL--------IERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDR 321 (425)
T ss_dssp TTSCEEEEEESTTTTC-STTCCEEEEEEHHH--------HHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEccchhhcc-CccceEEEecCHHH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3568999999999998 99999999999887 46666666655567899999999999874 222 67899
Q ss_pred HHHHHHHHHHHHHHHHHhC--CC-eeeCCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCC---CCCeEEEE
Q 013521 350 VIDYYKENAKIIVDAFQSL--GL-KVNGGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPG---GNEHIRVS 422 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~--g~-~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~---~~~~iRls 422 (441)
+++.++++++.+.+.|+++ |+ .+..+.+|+|+|++++. .++.+++...+.++||.+.||+.|+.. +.+++||+
T Consensus 322 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis 401 (425)
T 2r2n_A 322 VIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRAS 401 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEE
Confidence 9999999999999999885 76 45666789999999984 345565455555679999999999743 35899999
Q ss_pred ee-cCHHHHHHHHHHHHhhC
Q 013521 423 AF-GHREYISEACRRLKNFL 441 (441)
Q Consensus 423 ~~-~~~~~~~~~l~~l~~~l 441 (441)
++ .+++++++++++|++++
T Consensus 402 ~~~~~~~~i~~~~~~l~~~l 421 (425)
T 2r2n_A 402 FSSASPEQMDVAFQVLAQLI 421 (425)
T ss_dssp CSSCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHH
Confidence 86 68999999999998753
No 36
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=5.4e-45 Score=356.55 Aligned_cols=343 Identities=19% Similarity=0.294 Sum_probs=284.6
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~t~G~~~al 148 (441)
+.++++|+.|++++++|+.+.+++.+.+.. ...+|++ +..++++++++++.+.++ +++++|++|+|+++++
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~ 103 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLKNRLEQ-----EIYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAI 103 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHHHHHTT-----CCCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhC-----CCCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHH
Confidence 357999999999999999999999998863 3446644 669999999999987545 7899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecC--CCCCccCCCCC----CCCccEEEEc
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCR--PENNFFPDLST----TSRTDIIFFC 221 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~~~----~~~~~~v~i~ 221 (441)
.+ +..++++||+|+++.|+|+++...+...| .+++.++.+ .++.+..+++. ..++++|+++
T Consensus 104 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~v~i~ 171 (391)
T 4dq6_A 104 SLLINELTKANDKIMIQEPVYSPFNSVVKNNN------------RELIISPLQKLENGNYIMDYEDIENKIKDVKLFILC 171 (391)
T ss_dssp HHHHHHHSCTTCEEEECSSCCTHHHHHHHHTT------------CEEEECCCEECTTSCEECCHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcC------------CeEEeeeeeecCCCceEeeHHHHHHHhhcCCEEEEE
Confidence 97 67778999999999999999999999888 588999887 34444444332 1228999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCC-CcceeEEEecCCcccCCccceeEEEE
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..+.. ..++++++.|+||.+|++|+|+||++
T Consensus 172 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 251 (391)
T 4dq6_A 172 NPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVV 251 (391)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEE
Confidence 9999999999999999999999999999999999999887653 445555532 13678999999999999999999999
Q ss_pred eec-cccccCCchhHHHHHHHHh-hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--CCeeeCC
Q 013521 300 VPE-ELRYSNGYPVIKDFNRIVC-TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GLKVNGG 375 (441)
Q Consensus 300 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~ 375 (441)
+++ ++ .+.+..... ....+++.+.+.++.+++.+ ..+++++++++++++++.+.+.|++. ++.+..+
T Consensus 252 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 322 (391)
T 4dq6_A 252 LPDEKD--------YKLLDDAFTRIDIKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKVRKP 322 (391)
T ss_dssp CCSHHH--------HHHHHHHHHHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCC
T ss_pred eCCHHH--------HHHHHHHHHhhcCCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCC
Confidence 987 55 455554433 23446788899888888874 34678999999999999999999884 8998888
Q ss_pred CCceEEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 376 KNAPYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 376 ~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.+++++|++++ +.+..++.+.|++++||.+.||+.|+..+.+++||++..+++++++++++|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 323 EGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp SBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 88889999997 4567788888777669999999999887789999999889999999999998864
No 37
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-45 Score=370.48 Aligned_cols=332 Identities=21% Similarity=0.319 Sum_probs=262.0
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh---CCCCCCcEEEcCCcHHHHHH-HHHhcCCCC---
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD---MGIEGDEIFISDGAQSDISR-LQMLLGSNV--- 159 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~---~~~~~~~I~~t~G~~~al~~-l~~l~~~gd--- 159 (441)
|..+++++.+++..... ....+|++..|..++|++||+|+.+. +.+++++|++|+|+++++.+ +..++++||
T Consensus 103 P~~~~~~~~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~ 181 (498)
T 3ihj_A 103 PEDAKKRARRILQACGG-NSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSR 181 (498)
T ss_dssp CHHHHHHHHHHHHHC-----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGS
T ss_pred CHHHHHHHHHHHHhccC-CCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCC
Confidence 56666777777765321 24568999999999999999999753 55789999999999999998 566778875
Q ss_pred -EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCC-----C-----CccEEEEcCCCCccc
Q 013521 160 -TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT-----S-----RTDIIFFCSPNNPTG 228 (441)
Q Consensus 160 -~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~-----~-----~~~~v~i~~p~NPtG 228 (441)
.|+++.|+|+.+...+...| .+++.++++++++|.+|++.. + ++++|+++|||||||
T Consensus 182 d~Vlv~~p~y~~~~~~~~~~g------------~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG 249 (498)
T 3ihj_A 182 TGVMIPIPQYPLYSAVISELD------------AIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTG 249 (498)
T ss_dssp EEEEEEESCCTHHHHHHHHTT------------CEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTC
T ss_pred CEEEEeCCCchhHHHHHHHcC------------CEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCC
Confidence 99999999999999999998 589999998776676664431 1 589999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCcccccCC-------CcceeEEEecCCccc-CCccceeEEE
Q 013521 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIYEIPG-------AREVAIEISSFSKFA-GFTGVRLGWT 298 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~~~~~-------~~~~~i~i~S~SK~~-~~~G~r~G~l 298 (441)
.++|.+++++|+++|++||++||+||+|.++.+++ .+.++..+.. ...++|+++||||.+ |++|+|+||+
T Consensus 250 ~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~ 329 (498)
T 3ihj_A 250 QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYM 329 (498)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEE
T ss_pred CcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEE
Confidence 99999999999999999999999999999998864 3455554311 123479999999999 7899999999
Q ss_pred E---eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC-----CcH----HHHHHHHHHHHHHHHHHHHHHH
Q 013521 299 V---VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP-----DGF----QALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 299 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-----~~~----~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
+ .++++ ++.+..... ...+++.+.|.++.+++.. ..+ ++.+.+++.++++++.+.+.|+
T Consensus 330 ~~~~~~~~l--------~~~l~~~~~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 400 (498)
T 3ihj_A 330 EVINLHPEI--------KGQLVKLLS-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFN 400 (498)
T ss_dssp EEESCCHHH--------HHHHHHHHH-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCHHH--------HHHHHHHHh-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 45555 455555544 4556789999988888864 122 3456788999999999999999
Q ss_pred hC-CCeeeCCCCceEEEEEcC------------CCChHHH-HHHHHHhcCeEEeCCCCcCC-CCCCeEEEEeecCHHHHH
Q 013521 367 SL-GLKVNGGKNAPYVWVQFP------------GSSSWDV-FAEILEKTHILTIPGSGFGP-GGNEHIRVSAFGHREYIS 431 (441)
Q Consensus 367 ~~-g~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~~~~~~~~ 431 (441)
++ |+++.++.+++|+|++++ +..+.++ +..+++++||.+.||+.|+. .+.+++|+++..++++++
T Consensus 401 ~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~ 480 (498)
T 3ihj_A 401 QVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLK 480 (498)
T ss_dssp TSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHH
T ss_pred cCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHH
Confidence 98 999988889999998764 2233444 67788888999999999984 567899999988899999
Q ss_pred HHHHHHHhh
Q 013521 432 EACRRLKNF 440 (441)
Q Consensus 432 ~~l~~l~~~ 440 (441)
+++++|+++
T Consensus 481 ~~i~~L~~~ 489 (498)
T 3ihj_A 481 TVLQKVKDF 489 (498)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 38
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=8.1e-45 Score=355.46 Aligned_cols=338 Identities=17% Similarity=0.272 Sum_probs=273.8
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHH-HHHHHHHHHhhhCC--CCCCcEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMA-LRTAIADKFYKDMG--IEGDEIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~-lr~~ia~~l~~~~~--~~~~~I~~t~G~~~al~ 149 (441)
++|+|+.+++++++|+.+.+++.+.+.. ...+|++. ..+ +|+++|+++.+.++ +++++|++|+|+++++.
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~ 101 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMH-----GVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVS 101 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTT-----CCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhC-----CCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHH
Confidence 6899999999888899999999998752 34578654 778 99999999976444 78899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCC-CccCCCCC-----C-CCccEEEEc
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPDLST-----T-SRTDIIFFC 221 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~-----~-~~~~~v~i~ 221 (441)
+ +..++++||+|+++.|+|+++...+...| .+++.++.+.++ .+..+++. . .++++|+++
T Consensus 102 ~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~ 169 (390)
T 1d2f_A 102 ELIRQWSETGEGVVIHTPAYDAFYKAIEGNQ------------RTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLC 169 (390)
T ss_dssp HHHHHSSCTTCEEEEEESCCHHHHHHHHHTT------------CEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEE
T ss_pred HHHHHhcCCCCEEEEcCCCcHHHHHHHHHCC------------CEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEe
Confidence 7 56677999999999999999999998888 588888886543 33344322 1 378999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCc-ceeEEEecCCcccCCccceeEEEE
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAR-EVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~-~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..++... + . +.||||.+|++|+|+||++
T Consensus 170 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d--~-~~s~sK~~~~~G~r~G~~~ 246 (390)
T 1d2f_A 170 SPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWA--L-LTSGSKSFNIPALTGAYGI 246 (390)
T ss_dssp SSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEE--E-EECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHh--h-ccCccHhhcccChhheEEE
Confidence 9999999999999999999999999999999999999887643 44555553211 3 3 9999999999999999999
Q ss_pred eec-cccccCCchhHHHHHHHHh--hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeeC
Q 013521 300 VPE-ELRYSNGYPVIKDFNRIVC--TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-L-GLKVNG 374 (441)
Q Consensus 300 ~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~ 374 (441)
+++ ++ .+.+..... ..+.+++.+.|.++.+++++ ..+++++.++.++++++.+.+.|++ + ++.+.+
T Consensus 247 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 317 (390)
T 1d2f_A 247 IENSSS--------RDAYLSALKGRDGLSSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQI 317 (390)
T ss_dssp ECSHHH--------HHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred ECCHHH--------HHHHHHHHhhhcccCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEec
Confidence 974 44 455555443 23336788999888888873 3467889999999999999999998 5 888777
Q ss_pred CCCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 375 GKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+.+++++|++++. .+..++...+++++||.+.||+.|+..+++++||++..+++++++++++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l 386 (390)
T 1d2f_A 318 PQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAI 386 (390)
T ss_dssp CSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 7777889999974 466778888876679999999998755678999999888899999999998763
No 39
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=5.1e-45 Score=357.97 Aligned_cols=341 Identities=16% Similarity=0.203 Sum_probs=278.1
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al~ 149 (441)
+++++|+.|++++++++.+.+++.+.+.. ...+|++. ..++|+++++++.+ +.++++++|++|+|+++++.
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~ 103 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDE-----TVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVF 103 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHH-----CCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhc-----CCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHH
Confidence 36899999999888899999999998863 23467553 89999999999976 33478899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCC-CCccCCCCC------CCCccEEEEc
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE-NNFFPDLST------TSRTDIIFFC 221 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~~------~~~~~~v~i~ 221 (441)
+ +..++++||+|+++.|+|+++...+...| .+++.++.+++ +.+..+++. .+++++|+++
T Consensus 104 ~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~ 171 (399)
T 1c7n_A 104 NAVREFTKPGDGVIIITPVYYPFFMAIKNQE------------RKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFC 171 (399)
T ss_dssp HHHHHHCCTTCEEEECSSCCTHHHHHHHTTT------------CEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEE
T ss_pred HHHHHhcCCCCEEEEcCCCcHhHHHHHHHcC------------CEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEc
Confidence 8 67778999999999999999999888888 58888887532 233344322 2578999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCC-CcceeEEEecCCcccCCccceeEEEE
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..++. ..++++++.|+||.+|++|+|+||++
T Consensus 172 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 251 (399)
T 1c7n_A 172 SPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNII 251 (399)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEE
Confidence 9999999999999999999999999999999999999887653 445555531 13578999999999999999999999
Q ss_pred eecc-ccccCCchhHHHHHHHHhhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCC
Q 013521 300 VPEE-LRYSNGYPVIKDFNRIVCTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-L-GLKVNGG 375 (441)
Q Consensus 300 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~ 375 (441)
++++ + .+.+....... ..+++.+.|.++.+++++ ..+++++.++.++++++.+.+.|++ + ++.+.++
T Consensus 252 ~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 322 (399)
T 1c7n_A 252 IKNPDI--------RERFTKSRDATSGMPFTTLGYKACEICYKE-CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLI 322 (399)
T ss_dssp CCCHHH--------HHHHHHHHHHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCC
T ss_pred ECCHHH--------HHHHHHHHhhcccCCCCHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecC
Confidence 9754 5 45555544433 235788999988888874 2567899999999999999999998 5 8888777
Q ss_pred CCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 376 KNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 376 ~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
.+++++|++++. .+..++...+++++||.+.||+.|++.+++++||++...++++++++++|+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 389 (399)
T 1c7n_A 323 EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKA 389 (399)
T ss_dssp SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHHHHHHHHHHH
Confidence 778889999973 46677888877677999999999876567899999987889999999999875
No 40
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=2.7e-44 Score=350.69 Aligned_cols=332 Identities=25% Similarity=0.387 Sum_probs=275.1
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
++++|+.|.+++++|+.+.+++.+.+.. ..+|++..|..++|+++++++ ++++++|++|+|+++++.+ +
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~~~y~~~~~~~~l~~~la~~~----~~~~~~v~~~~g~~~a~~~~~ 95 (381)
T 1v2d_A 26 GAVNLGQGFPSNPPPPFLLEAVRRALGR------QDQYAPPAGLPALREALAEEF----AVEPESVVVTSGATEALYVLL 95 (381)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHTTT------SCSCCCTTCCHHHHHHHHHHH----TSCGGGEEEESSHHHHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHH------hcCCCCCCCCHHHHHHHHHhc----CCChhhEEEcCChHHHHHHHH
Confidence 5899999999888899999999998753 346877779999999999996 7888999999999999998 5
Q ss_pred HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecC--CCCCccCCCC---C--CCCccEEEEcCCC
Q 013521 152 QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCR--PENNFFPDLS---T--TSRTDIIFFCSPN 224 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~--~~~~~~~~~~---~--~~~~~~v~i~~p~ 224 (441)
..++++||+|++++|+|+++...++..| .+++.++.+ ++ ++..+++ + .+++++|++++||
T Consensus 96 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~ 162 (381)
T 1v2d_A 96 QSLVGPGDEVVVLEPFFDVYLPDAFLAG------------AKARLVRLDLTPE-GFRLDLSALEKALTPRTRALLLNTPM 162 (381)
T ss_dssp HHHCCTTCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEEETT-EEECCHHHHHTTCCTTEEEEEEESSC
T ss_pred HHhCCCCCEEEEcCCCchhHHHHHHHcC------------CEEEEEeCCCCCc-cCCcCHHHHHHhcCcCCEEEEECCCC
Confidence 6778999999999999999999888888 588888876 22 2223321 1 3578999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
||||.++|.+++++|+++|++||+++|+||+|.++.++..+.++..+ ..++++++.|+||.+|++|+|+||+++++++
T Consensus 163 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~--~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~ 240 (381)
T 1v2d_A 163 NPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF--APERTFTVGSAGKRLEATGYRVGWIVGPKEF 240 (381)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH--CTTTEEEEEEHHHHTTCGGGCCEEEECCTTT
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh--cCCCEEEEeechhhcCCcccceEEEEeCHHH
Confidence 99999999999999999999999999999999988763334455554 3467899999999999999999999998877
Q ss_pred cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEE
Q 013521 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-FQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWV 383 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 383 (441)
.+.+.........+.+.+.|.++.++++... .+++++++++++++++++.+.|++.|+++..+.+++|+|+
T Consensus 241 --------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 312 (381)
T 1v2d_A 241 --------MPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMA 312 (381)
T ss_dssp --------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEE
T ss_pred --------HHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCCcceEEEE
Confidence 4556555554455678899988888886321 3567889999999999999999998998887777899999
Q ss_pred EcCCCChHHHHHHHHHhcCeEEeCCCCcCC--CCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 384 QFPGSSSWDVFAEILEKTHILTIPGSGFGP--GGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+++..+ +..+++++||.+.||+.|+. .+.+++||++..+++++++++++|++++
T Consensus 313 ~~~~~~----~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l 368 (381)
T 1v2d_A 313 ELPGWD----AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV 368 (381)
T ss_dssp ECTTCC----HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred ecChHh----HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 997532 56667777999999998864 3568999999779999999999998864
No 41
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=1.6e-44 Score=356.96 Aligned_cols=343 Identities=19% Similarity=0.277 Sum_probs=287.3
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhh--CCCCCCcEEEcCCcHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKD--MGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~--~~~~~~~I~~t~G~~~al 148 (441)
++++|+|+.++++++.++.+.+++.+.+.. ....|++. ..++++++++++.+. +.+++++|++|+|+++++
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~ 132 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGRE-----HIFGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAI 132 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHH-----CCSSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhc-----CCcCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHH
Confidence 467999999999999999999999998864 33466543 389999999999864 447899999999999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecC-CCCCccCCCCC-----C-CCccEEEE
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCR-PENNFFPDLST-----T-SRTDIIFF 220 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~-~~~~~~~~~~~-----~-~~~~~v~i 220 (441)
++ +..++++||+|+++.|+|+++...+...| .+++.+|++ .++.+..|++. . +++++|++
T Consensus 133 ~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil 200 (421)
T 3l8a_A 133 SIALQAFSEKGDAVLINSPVYYPFARTIRLND------------HRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLL 200 (421)
T ss_dssp HHHHHHHSCTEEEEEEEESCCHHHHHHHHHTT------------EEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHhcCCCCEEEECCCCcHHHHHHHHHCC------------CEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEE
Confidence 97 67778999999999999999999999888 588888876 34444445332 2 68999999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCC-CcceeEEEecCCcccCCccceeEEE
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++||||||.++|.+++++|+++|++||+++|+||+|.++.+.+. +.++..++. ..++++++.|+||.+|++|+|+||+
T Consensus 201 ~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~ 280 (421)
T 3l8a_A 201 CSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFA 280 (421)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEE
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeE
Confidence 99999999999999999999999999999999999999888653 445655532 3478899999999999999999999
Q ss_pred Eee-ccccccCCchhHHHHHHHH-hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCC
Q 013521 299 VVP-EELRYSNGYPVIKDFNRIV-CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGG 375 (441)
Q Consensus 299 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 375 (441)
+++ +++ .+.+.... .....+.+++.+.++.++++. ..++++++++.++++++++.+.|+++ ++.+..+
T Consensus 281 ~~~~~~l--------~~~~~~~~~~~~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~ 351 (421)
T 3l8a_A 281 IIQNESL--------RRKFQYRQLANNQHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEP 351 (421)
T ss_dssp ECCSHHH--------HHHHHHHHHHTTCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECC
T ss_pred EcCCHHH--------HHHHHHHHHhcccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCC
Confidence 998 555 45555444 334446888999988888873 45778999999999999999999986 8998888
Q ss_pred CCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 376 KNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 376 ~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.+++++|++++. .+..++...+++++||.+.||+.|+..+++++||++..+++++++++++|++++
T Consensus 352 ~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l 419 (421)
T 3l8a_A 352 EGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVF 419 (421)
T ss_dssp SBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred CeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 888899999973 466788888887789999999999877789999999889999999999999875
No 42
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=100.00 E-value=8.1e-44 Score=358.81 Aligned_cols=333 Identities=22% Similarity=0.308 Sum_probs=268.3
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHHHH-HHHhc-CCCCEE
Q 013521 86 IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDISR-LQMLL-GSNVTV 161 (441)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al~~-l~~l~-~~gd~V 161 (441)
.|..++++..+.+.... .....+|++..|..++|+++++++.+ ++.+++++|++|+|+++++.+ +..++ ++||.|
T Consensus 107 ~p~~~~~~a~~~l~~~~-~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~V 185 (500)
T 3tcm_A 107 FSADSISRAKQILAMIP-GRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGI 185 (500)
T ss_dssp SCHHHHHHHHHHHTTST-TSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEE
T ss_pred CCHHHHHHHHHHHHcCC-CCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEE
Confidence 45666777777665431 02567899999999999999999975 566889999999999999998 56666 799999
Q ss_pred EEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C------CCccEEEEcCCCCccccC
Q 013521 162 AVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T------SRTDIIFFCSPNNPTGHA 230 (441)
Q Consensus 162 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~------~~~~~v~i~~p~NPtG~~ 230 (441)
+++.|+|+++...+...| .+++.++++++++|..+++. . .++++|+++|||||||.+
T Consensus 186 lv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~ 253 (500)
T 3tcm_A 186 LVPIPQYPLYSASIALHG------------GALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQV 253 (500)
T ss_dssp EEEESCCTHHHHHHHHTT------------CEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCC
T ss_pred EEeCCCcHhHHHHHHHcC------------CEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCccc
Confidence 999999999999999999 58999999887666666442 1 268999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCcccc----cC--CCcceeEEEecCCccc-CCccceeEEEEe-
Q 013521 231 ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIYE----IP--GAREVAIEISSFSKFA-GFTGVRLGWTVV- 300 (441)
Q Consensus 231 ~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~~----~~--~~~~~~i~i~S~SK~~-~~~G~r~G~l~~- 300 (441)
+|.+++++|+++|++||+++|+||+|+++.+++ ...++.. +. ....++++++||||.+ |++|+|+||+++
T Consensus 254 ~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 333 (500)
T 3tcm_A 254 LAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEIT 333 (500)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEe
Confidence 999999999999999999999999999988853 2344432 21 1223579999999999 899999999998
Q ss_pred --eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc--------H-HHHHHHHHHHHHHHHHHHHHHHhC-
Q 013521 301 --PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG--------F-QALRTVIDYYKENAKIIVDAFQSL- 368 (441)
Q Consensus 301 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~-~~~~~~~~~~~~~~~~l~~~L~~~- 368 (441)
++++ ++.+..... ...+++.+.|.++..++.... + ++++.+++.++++++.+.+.|+++
T Consensus 334 ~~~~~~--------~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~ 404 (500)
T 3tcm_A 334 GFSAPV--------REQIYKIAS-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLE 404 (500)
T ss_dssp SCCTTH--------HHHHHHHHH-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CCCHHH--------HHHHHHHHh-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6666 455555543 345678899998888887321 2 567888899999999999999998
Q ss_pred CCeeeCCCCceEEEEEcCC------------CC-hHHHHHHHHHhcCeEEeCCCCcCC-CCCCeEEEEeecCHHHHHHHH
Q 013521 369 GLKVNGGKNAPYVWVQFPG------------SS-SWDVFAEILEKTHILTIPGSGFGP-GGNEHIRVSAFGHREYISEAC 434 (441)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~~~~~~~~~~l 434 (441)
|+++.++.+++|+|+++.- .. +..++..+++++||.+.||+.|+. .+.++||+++..+++++++++
T Consensus 405 g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i 484 (500)
T 3tcm_A 405 GITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVI 484 (500)
T ss_dssp TEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHH
T ss_pred CcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHH
Confidence 9999888899999976531 11 233456788888999999999984 567899999988889999999
Q ss_pred HHHHhh
Q 013521 435 RRLKNF 440 (441)
Q Consensus 435 ~~l~~~ 440 (441)
++|+++
T Consensus 485 ~~l~~~ 490 (500)
T 3tcm_A 485 SRFTVF 490 (500)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 43
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=100.00 E-value=2.5e-45 Score=362.83 Aligned_cols=340 Identities=17% Similarity=0.179 Sum_probs=264.2
Q ss_pred CeEEeCCCCCC---CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH-
Q 013521 73 RLIRLGIGDTT---QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI- 148 (441)
Q Consensus 73 ~~i~l~~g~~~---~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al- 148 (441)
.+|+|+.|+|+ +++++.+.+++.+.+.. .......+|++..|..+||+++|+|+ ++++++|++|+|+++++
T Consensus 33 ~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~Y~~~~G~~~lr~~ia~~~----~~~~~~i~~t~G~~~al~ 107 (422)
T 3d6k_A 33 LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRT-KDGVDCRNYGGLLGIADIRELWAEAL----GLPADLVVAQDGSSLNIM 107 (422)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSTTCCBC-TTCCBTTSSCCSSCCHHHHHHHHHHH----TCCGGGEEECSSCHHHHH
T ss_pred CeEeCCCCCCChhhCCCcHHHHHHHHHHHhh-ccchhhhCCCCCCCCHHHHHHHHHHh----CCChhHEEEecchHHHHH
Confidence 47999999998 77777777776654210 01123568998899999999999998 78899999999999997
Q ss_pred -HHH-HHhcCC------------CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--
Q 013521 149 -SRL-QMLLGS------------NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST-- 211 (441)
Q Consensus 149 -~~l-~~l~~~------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~-- 211 (441)
.++ ..+..+ +|+|++++|+|+++...++..| .+++.++++++ +++++ +++
T Consensus 108 l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~l~~~l 174 (422)
T 3d6k_A 108 FDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFG------------FEMINVPMTDE-GPDMGVVRELV 174 (422)
T ss_dssp HHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHT------------CEEEEEEEETT-EECHHHHHHHH
T ss_pred HHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcC------------CEEEecCCCCC-CCCHHHHHHHH
Confidence 554 445554 3589999999999999999998 58889998764 33322 221
Q ss_pred C-CCccEEE-EcCCCCccccCCCHHHHHHHHHHHH-HcCcEEEEcccccc--cccCCC-CCccccc---CCCcceeEEEe
Q 013521 212 T-SRTDIIF-FCSPNNPTGHAATWQQLKKLVEFAK-ANGSIIVYDSAYAA--YITDPS-PRSIYEI---PGAREVAIEIS 282 (441)
Q Consensus 212 ~-~~~~~v~-i~~p~NPtG~~~~~~~~~~i~~~a~-~~~~~ii~De~~~~--~~~~~~-~~~~~~~---~~~~~~~i~i~ 282 (441)
. .++++|+ +++||||||.++|.+++++|+++|+ +||++||+||+|.+ |..++. ..++..+ .+..+++++++
T Consensus 175 ~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 254 (422)
T 3d6k_A 175 KDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMS 254 (422)
T ss_dssp TSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEE
T ss_pred hcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEc
Confidence 2 3788888 5799999999999999999999999 99999999999986 444332 2344332 23457899999
Q ss_pred cCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC-CcH-HHHHHHHHHHHHHHHH
Q 013521 283 SFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP-DGF-QALRTVIDYYKENAKI 360 (441)
Q Consensus 283 S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~-~~~~~~~~~~~~~~~~ 360 (441)
||||. ++||+|+||+++++++ ++.+.........+++.++|.++.+++++ ..+ ++++++++.++++++.
T Consensus 255 S~SK~-~~~GlriG~~~~~~~l--------~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (422)
T 3d6k_A 255 STSKI-THAGSGVSFFASSKEN--------IEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFER 325 (422)
T ss_dssp ESTTT-SCTTSSCEEEECCHHH--------HHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred Chhhh-cCcccceEEEEeCHHH--------HHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Confidence 99999 5699999999999877 46666666666667899999999999986 323 6788999999999999
Q ss_pred HHHHHHh----CC-CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeC-CCCcC--C-CCCCeEEEEee-cCHHHH
Q 013521 361 IVDAFQS----LG-LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIP-GSGFG--P-GGNEHIRVSAF-GHREYI 430 (441)
Q Consensus 361 l~~~L~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~--~-~~~~~iRls~~-~~~~~~ 430 (441)
+.+.|.+ .| +.+..+.+|+|+|++++..+...+ ..+++++||.+.| |..|. . .+++++||+++ .+++++
T Consensus 326 l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~-~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i 404 (422)
T 3d6k_A 326 VLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRV-VELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAEL 404 (422)
T ss_dssp HHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTCHHHH-HHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHH
T ss_pred HHHHHHHhcCcCCceEEeCCCcceEEEEECCCCCHHHH-HHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHH
Confidence 8888875 33 566667789999999985444444 4556677999999 55564 2 24689999997 589999
Q ss_pred HHHHHHHHhh
Q 013521 431 SEACRRLKNF 440 (441)
Q Consensus 431 ~~~l~~l~~~ 440 (441)
++++++|+++
T Consensus 405 ~~~~~~l~~~ 414 (422)
T 3d6k_A 405 EVAMDGFATC 414 (422)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 44
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=2.8e-44 Score=348.42 Aligned_cols=327 Identities=17% Similarity=0.283 Sum_probs=269.5
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
.+++|+|+.|++++++|+.+.+++.+.+.. ..+|++..+ .++|+++|+++ ++++++|++|+|+++++.+
T Consensus 29 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~~~y~~~~~-~~lr~~la~~~----~~~~~~v~~~~g~~~a~~~ 97 (365)
T 3get_A 29 VKEVIKLASNENPFGTPPKAIECLRQNANK------AHLYPDDSM-IELKSTLAQKY----KVQNENIIIGAGSDQVIEF 97 (365)
T ss_dssp CSCCEECSSCCCTTCSCHHHHHHHHHHGGG------TTSCCCTTC-HHHHHHHHHHH----TCCGGGEEEESSHHHHHHH
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHHHh------hccCCCCCh-HHHHHHHHHHh----CCCcceEEECCCHHHHHHH
Confidence 367999999999999999999999998752 346766655 89999999997 7889999999999999998
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPN 224 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~ 224 (441)
+..++++||+|+++.|+|+++...+...| .+++.++++. .++ .+++. .+++++|++++||
T Consensus 98 ~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-~~~-~d~~~l~~~l~~~~~~v~~~~p~ 163 (365)
T 3get_A 98 AIHSKLNSKNAFLQAGVTFAMYEIYAKQCG------------AKCYKTQSIT-HNL-DEFKKLYETHKDEIKLIFLCLPN 163 (365)
T ss_dssp HHHHHCCTTCEEEECSSCCTHHHHHHHHHT------------CEEEECSSSS-CCH-HHHHHHHHHTTTTEEEEEEESSC
T ss_pred HHHHHhCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEEecCC-CCC-CCHHHHHHHhCCCCCEEEEcCCC
Confidence 57778999999999999999999999998 5888988822 233 44322 3689999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc--C-CCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT--D-PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~--~-~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
||||.++|.+++++|+++| ++|+++|+||+|+++.+ . ..+.+.....+..+++++++||||.+|++|+|+||++++
T Consensus 164 nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 242 (365)
T 3get_A 164 NPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIAN 242 (365)
T ss_dssp TTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEEC
T ss_pred CCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcC
Confidence 9999999999999999998 57999999999998874 3 223334333223467899999999999999999999998
Q ss_pred ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEE
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYV 381 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 381 (441)
+++ .+.+...... .+++.+.|.++.+++++ .+++++.+++++++++.+.+.|+++|+.+.+ +.++|+
T Consensus 243 ~~~--------~~~~~~~~~~--~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~~~ 309 (365)
T 3get_A 243 ANI--------ISAFYKLRAP--FNVSNLALKAAVAAMDD--DEFTEKTLENNFSQMELYKEFAKKHNIKIID-SYTNFI 309 (365)
T ss_dssp HHH--------HHHHHHHSCT--TCSCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECC-CSSSEE
T ss_pred HHH--------HHHHHHhcCC--CCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCCCEECC-CCCeEE
Confidence 776 3555543332 45889999999999984 3678999999999999999999999988765 467889
Q ss_pred EEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 382 WVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 382 ~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
|++++..+..++.+.|.+ +||.+.||..|+ ++++||++. ++++++++++.|++++
T Consensus 310 ~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~---~~~iRis~~-~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 310 TYFFDEKNSTDLSEKLLK-KGIIIRNLKSYG---LNAIRITIG-TSYENEKFFTEFDKIL 364 (365)
T ss_dssp EEECSSSCHHHHHHHHHT-TTEECEECGGGT---CSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHH-CCEEEEECccCC---CCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 999985456677777665 599999999887 789999986 7899999999998763
No 45
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=6.9e-45 Score=360.08 Aligned_cols=344 Identities=20% Similarity=0.332 Sum_probs=278.0
Q ss_pred CCCeEEeCCCCCCC--CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC---CCCCcEEEcCCcH
Q 013521 71 DARLIRLGIGDTTQ--PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG---IEGDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~~~--~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~---~~~~~I~~t~G~~ 145 (441)
++++|+|+.|.++. .+++.+.+++.+.+.... ....+|++..|..++|+++|+++.+.++ +++++|++|+|++
T Consensus 42 ~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~ 119 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEY--HYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 119 (425)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSH--HHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred CCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcc--hhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHH
Confidence 35789999997653 367889999999886521 1245788888999999999999965435 7789999999999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C--------C
Q 013521 146 SDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T--------S 213 (441)
Q Consensus 146 ~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~--------~ 213 (441)
+++.+ +..++++||+|+++.|+|+++...+...| .+++.++.+++ +++++ +++ . .
T Consensus 120 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~ 186 (425)
T 1vp4_A 120 QALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYL------------ANFVVVPLEDD-GMDLNVLERKLSEFDKNGKIK 186 (425)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTT------------CEEEEEEEETT-EECHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcC------------CEEEEeccCCC-CCCHHHHHHHHHhhhhcccCC
Confidence 99987 67778999999999999999999988888 58888888654 33222 211 1 2
Q ss_pred CccEEE-EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCc
Q 013521 214 RTDIIF-FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 214 ~~~~v~-i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
++++|+ +++||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..++ ..+++++++||||.+| +
T Consensus 187 ~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~i~~~s~sK~~~-~ 264 (425)
T 1vp4_A 187 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-GPERVVLLNTFSKVLA-P 264 (425)
T ss_dssp GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH-CTTTEEEEEESTTTTC-G
T ss_pred CceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhC-CCCCEEEEeccccccc-c
Confidence 688885 679999999999999999999999999999999999999887653 34565553 2457899999999999 9
Q ss_pred cceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHhC--
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAFQSL-- 368 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-- 368 (441)
|+|+||+++++++ .+.+.........+++.+.|.++.+++++..+ ++++++++.++++++.+.+.|++.
T Consensus 265 G~r~G~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 336 (425)
T 1vp4_A 265 GLRIGMVAGSKEF--------IRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFS 336 (425)
T ss_dssp GGCEEEEECCHHH--------HHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ccceEEEeeCHHH--------HHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999876 45555554444455789999999999975433 678899999999999999999875
Q ss_pred ---CCeeeCCCCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCC--CCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 369 ---GLKVNGGKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPG--GNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 369 ---g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
|+.+..+.+|+|+|++++ +.+..++.+.++++ ||.+.||+.|+.. +++++||++.. +++++++++++|+++
T Consensus 337 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~ 414 (425)
T 1vp4_A 337 DIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREV 414 (425)
T ss_dssp TSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 688776778999999997 34556788888877 9999999988643 46899999866 789999999999875
No 46
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=1e-43 Score=344.24 Aligned_cols=327 Identities=19% Similarity=0.319 Sum_probs=269.1
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
+.+++|+|+.|++++++|+.+.+++.+.+. ....| +..+..++|+++|+++ ++++++|++|+|+++++.
T Consensus 30 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------~~~~y-~~~~~~~lr~~la~~~----~~~~~~v~~~~g~t~a~~ 98 (363)
T 3ffh_A 30 GLTKITKLSSNENPLGTSKKVAAIQANSSV------ETEIY-PDGWASSLRKEVADFY----QLEEEELIFTAGVDELIE 98 (363)
T ss_dssp TCSCCEECSSCSCTTCCCHHHHHHHHTCBS------CCCBC-----CHHHHHHHHHHH----TCCGGGEEEESSHHHHHH
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHHHH------HhhcC-CCcchHHHHHHHHHHh----CCChhhEEEeCCHHHHHH
Confidence 346799999999999999999998887542 34456 5568999999999997 788899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSP 223 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p 223 (441)
+ +..++++||+|+++.|+|+++...++..| .+++.++.+++.. .+++. .+++++|++++|
T Consensus 99 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~--~d~~~l~~~i~~~~~~v~~~~p 164 (363)
T 3ffh_A 99 LLTRVLLDTTTNTVMATPTFVQYRQNALIEG------------AEVREIPLLQDGE--HDLEGMLNAIDEKTTIVWICNP 164 (363)
T ss_dssp HHHHHHCSTTCEEEEEESSCHHHHHHHHHHT------------CEEEEEECCTTSC--CCHHHHHHHCCTTEEEEEEESS
T ss_pred HHHHHHccCCCEEEEcCCChHHHHHHHHHcC------------CEEEEecCCCCCC--cCHHHHHHhcccCCCEEEEeCC
Confidence 8 56778999999999999999999999998 5899999875433 33321 368999999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
|||||.++|.+++++|++.|++ |+++|+||+|+++.+ +...+.....+.++++++++||||.+|++|+|+||++++++
T Consensus 165 ~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 242 (363)
T 3ffh_A 165 NNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKE 242 (363)
T ss_dssp CTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHH
T ss_pred CCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHH
Confidence 9999999999999999988877 999999999998877 43334444433467899999999999999999999999877
Q ss_pred ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-CCCeeeCCCCceEEE
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-LGLKVNGGKNAPYVW 382 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~ 382 (441)
+ .+.+..... ..+.+.+.|.++.+++++ .+++++.+++++++++.+.+.|++ .|+.+.+ +.++|+|
T Consensus 243 ~--------~~~l~~~~~--~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~~~~~ 309 (363)
T 3ffh_A 243 I--------IRQLNIVRP--PFNTTSIGQKLAIEAIKD--QAFIGECRTSNANGIKQYEAFAKRFEKVKLYP-ANGNFVL 309 (363)
T ss_dssp H--------HHHHHHTCC--SCCCBHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECC-CCSSEEE
T ss_pred H--------HHHHHHhCC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhhCCCceECC-CCCeEEE
Confidence 7 355554333 345889999999999974 367899999999999999999999 5888875 5788999
Q ss_pred EEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 383 VQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 383 ~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++++. +..++.+.+.+ +||.+.||+.|+. ++++||++. +++++++++++|++++
T Consensus 310 ~~~~~-~~~~~~~~l~~-~gi~v~~g~~~~~--~~~iRis~~-~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 310 IDLGI-EAGTIFSYLEK-NGYITRSGAALGF--PTAVRITIG-KEEDNSAVIALLEKLL 363 (363)
T ss_dssp EECSS-CHHHHHHHHHH-TTEECEETTTTTC--TTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred EECCC-CHHHHHHHHHH-CCeEEEeCccCCC--CCeEEEECC-CHHHHHHHHHHHHHhC
Confidence 99975 56677777765 5999999998865 689999986 8899999999999875
No 47
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=100.00 E-value=2.8e-44 Score=356.00 Aligned_cols=347 Identities=21% Similarity=0.316 Sum_probs=271.4
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhc------cCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC----CCCCcEEEc
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFAL------STVKGYKGYGAEQGNMALRTAIADKFYKDMG----IEGDEIFIS 141 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~------~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~----~~~~~I~~t 141 (441)
.++++|+.+.+++++ +.+.+++.+..... .......+|+++.|..++|+++|+++.+.++ +++++|++|
T Consensus 36 ~~~i~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~ 114 (428)
T 1iay_A 36 NGVIQMGLAENQLCL-DLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMA 114 (428)
T ss_dssp TSBEECSSCCCCSSH-HHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEE
T ss_pred CceeeeccccchhhH-HHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEc
Confidence 368999998887654 47777777532100 0001235788777899999999999975333 678999999
Q ss_pred CCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH-HhccccccccccCccceeEEeecCCCCCccCCCCC--------
Q 013521 142 DGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV-IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-------- 211 (441)
Q Consensus 142 ~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-------- 211 (441)
+|+++++.+ +..++++||.|+++.|+|+++...+. ..| .+++.++.+.++++..+++.
T Consensus 115 ~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 182 (428)
T 1iay_A 115 GGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTG------------VQLIPIHCESSNNFKITSKAVKEAYENA 182 (428)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTC------------CEEEEECCCTTTTTCCCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcC------------CEEEEeecCCccCCcCCHHHHHHHHHHH
Confidence 999999987 67778999999999999999876443 456 58888888654454444322
Q ss_pred ---CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCC-------cceeEE
Q 013521 212 ---TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGA-------REVAIE 280 (441)
Q Consensus 212 ---~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~-------~~~~i~ 280 (441)
.+++++|++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++. ..++..+... .+++++
T Consensus 183 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv 262 (428)
T 1iay_A 183 QKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHI 262 (428)
T ss_dssp HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEE
T ss_pred HhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEE
Confidence 13789999999999999999999999999999999999999999999777543 3345554322 578899
Q ss_pred EecCCcccCCccceeEEEEee-ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH--HHHHHHHHHHHHH
Q 013521 281 ISSFSKFAGFTGVRLGWTVVP-EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QALRTVIDYYKEN 357 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~ 357 (441)
+.||||.+|++|+|+||++++ +++ ++.+..... ..+++.++|.++.+++++..+ ++++++++.++++
T Consensus 263 ~~s~sK~~g~~Glr~G~~~~~~~~~--------~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 263 VYSLSKDMGLPGFRVGIIYSFNDDV--------VNCARKMSS--FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKR 332 (428)
T ss_dssp EEESTTTSSCGGGCEEEEEESCHHH--------HHHHHHHHT--TSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred EecchhhcCCCCceEEEEEeCCHHH--------HHHHHHHHh--cccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999995 444 344544322 345789999999999986542 4778899999999
Q ss_pred HHHHHHHHHhCCCeeeCCCCceEEEEEcCCC-------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee-cCHHH
Q 013521 358 AKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF-GHREY 429 (441)
Q Consensus 358 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~~ 429 (441)
++.+.+.|+++|+++.++.+|+|+|++++.. ...++.+.+++++||.+.||+.|+..+++++||++. .++++
T Consensus 333 ~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~ 412 (428)
T 1iay_A 333 HKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGT 412 (428)
T ss_dssp HHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHH
T ss_pred HHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHH
Confidence 9999999998888887766899999999732 234667777776799999999887655789999996 68999
Q ss_pred HHHHHHHHHhhC
Q 013521 430 ISEACRRLKNFL 441 (441)
Q Consensus 430 ~~~~l~~l~~~l 441 (441)
+++++++|++++
T Consensus 413 i~~~~~~l~~~l 424 (428)
T 1iay_A 413 VDIALARIRRFV 424 (428)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
No 48
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=100.00 E-value=1.4e-43 Score=349.68 Aligned_cols=352 Identities=19% Similarity=0.265 Sum_probs=258.4
Q ss_pred CCCeEEeCCCCCCCCCc--HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHH
Q 013521 71 DARLIRLGIGDTTQPIP--DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~--~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~ 146 (441)
++++++|+.|.|+..++ +.+.+++.+.+.+........+|++..|..++|+++|+|+.+ ++++++++|++|+|+++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~ 109 (417)
T 3g7q_A 30 TPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQS 109 (417)
T ss_dssp --CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred CCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHH
Confidence 35799999999876322 455666666554311001234798889999999999999965 56788999999999999
Q ss_pred HHHH-HHHhcCCCC-----EEEEe-CCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC---CCCCCCcc
Q 013521 147 DISR-LQMLLGSNV-----TVAVQ-DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD---LSTTSRTD 216 (441)
Q Consensus 147 al~~-l~~l~~~gd-----~Vlv~-~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~---~~~~~~~~ 216 (441)
++++ +..++++|| .|+++ +|+|+++...+...+.... .. ..+..++.+. .++..| ++..++++
T Consensus 110 al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~-~~~~~d~~~l~~~~~~~ 182 (417)
T 3g7q_A 110 AFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS---AR---PNIELLPEGQ-FKYHVDFEHLHIGEETG 182 (417)
T ss_dssp HHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEE---CC---CEEEEEGGGE-EEEECCGGGCCCCTTEE
T ss_pred HHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhcc---cc---CcccccCCcc-cccccCHHHhccccCce
Confidence 9998 567788887 89996 9999999876644332100 00 2344443321 012222 22236789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
++++++||||||.++|.+++++|+++|++||+++|+||+|+.+.......... .+..+++++++|||| ++++|+|+|
T Consensus 183 ~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~--~~~~~~~i~~~s~sK-~~~~G~r~G 259 (417)
T 3g7q_A 183 MICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEAR--PLWNPNIILCMSLSK-LGLPGSRCG 259 (417)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC--CCCCTTEEEEEESGG-GTCTTSCCE
T ss_pred EEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccc--cCCCCCEEEEEechh-ccCCCcceE
Confidence 99999999999999999999999999999999999999998643221111111 123577899999999 578999999
Q ss_pred EEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHH-HHHHHHHHHHHHHHHHHhC----CC
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRT-VIDYYKENAKIIVDAFQSL----GL 370 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~-~~~~~~~~~~~l~~~L~~~----g~ 370 (441)
|+++++++ .+.+.........+++.+.|.++.+++.+..+ .+..+ +++.++++++.+.+.|.+. ++
T Consensus 260 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 331 (417)
T 3g7q_A 260 IIIANDKT--------ITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERC 331 (417)
T ss_dssp EEECCHHH--------HHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTC
T ss_pred EEEeCHHH--------HHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 99998887 46676666666666888999999999986655 44555 7888999999999988763 57
Q ss_pred eeeCCCCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCC-------CCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 371 KVNGGKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGG-------NEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 371 ~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~-------~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
.+..+.+|+|+|++++. .+..++...+ .++||.+.||+.|.... +++|||+++.+++++++++++|++++
T Consensus 332 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l 410 (417)
T 3g7q_A 332 LIHKPEGAIFLWLWFKDLPITTELLYQRL-KARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEI 410 (417)
T ss_dssp EEECCCBSSEEEEECTTCSSCHHHHHHHH-HHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHHHH
T ss_pred eeeCCCcceEEEEEcCCCCCCHHHHHHHH-HHCCEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 88777889999999984 4666777776 45699999999986543 57999999779999999999998763
No 49
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=6.5e-44 Score=344.34 Aligned_cols=328 Identities=17% Similarity=0.266 Sum_probs=270.0
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
.++++|+|+.|++++++|+.+.+++.+.+.. ..+| +..+..++|+++|+++ ++++++|++|+|+++++.
T Consensus 14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~~~y-~~~~~~~l~~~la~~~----~~~~~~i~~~~g~~~a~~ 82 (354)
T 3ly1_A 14 STDNPIRINFNENPLGMSPKAQAAARDAVVK------ANRY-AKNEILMLGNKLAAHH----QVEAPSILLTAGSSEGIR 82 (354)
T ss_dssp CSSSCEECSSCCCSSCCCHHHHHHHHHTGGG------TTSC-CHHHHHHHHHHHHHHT----TSCGGGEEEESHHHHHHH
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHHHhh------CcCC-CCCchHHHHHHHHHHh----CCChHHEEEeCChHHHHH
Confidence 3467999999999999999999999987753 3467 5568899999999996 788999999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C--CCccEEEEcCC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T--SRTDIIFFCSP 223 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~--~~~~~v~i~~p 223 (441)
+ +..++++||+|+++.|+|+++...++..| .+++.++.+++..++++ +++ . +++++|++++|
T Consensus 83 ~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p 150 (354)
T 3ly1_A 83 AAIEAYASLEAQLVIPELTYGDGEHFAKIAG------------MKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNP 150 (354)
T ss_dssp HHHHHHCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESS
T ss_pred HHHHHHhCCCCeEEECCCCchHHHHHHHHcC------------CEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCC
Confidence 8 56778999999999999999999999888 58999998754333222 111 2 68999999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc-CCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI-PGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~-~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
|||||.++|.+++++|+++| +||+++|+||+|.++.+++.+.+.... +...+++++++||||.+|++|+|+||+++++
T Consensus 151 ~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~ 229 (354)
T 3ly1_A 151 NNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHP 229 (354)
T ss_dssp CTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCH
T ss_pred CCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCH
Confidence 99999999999999999999 899999999999998876644344433 3222778999999999999999999999988
Q ss_pred cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEE
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVW 382 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 382 (441)
++ .+.+...... .+++.+.|.++.+++++. .++++++++++++++.+.+.|+++|+.+.+ +.|+|+|
T Consensus 230 ~~--------~~~~~~~~~~--~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~ 296 (354)
T 3ly1_A 230 TV--------IALMGRYVAG--EKINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLPYLP-SEGNFVF 296 (354)
T ss_dssp HH--------HHHHGGGTTC--SCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CCSSEEE
T ss_pred HH--------HHHHHHhcCC--CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCeECC-CCceEEE
Confidence 76 3555544333 568899999999999843 678999999999999999999988888775 5788999
Q ss_pred EEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 383 VQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 383 ~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
++++. +..++...|.+ +||.+. |..++ .++++||++. +++++++++++|+++
T Consensus 297 ~~~~~-~~~~~~~~l~~-~gi~v~-g~~~~--~~~~iRis~~-~~~~i~~~~~~l~~~ 348 (354)
T 3ly1_A 297 HQLVV-PLKDYQTHMAD-AGVLIG-RAFPP--ADNWCRISLG-TPQEMQWVADTMREF 348 (354)
T ss_dssp EECSS-CHHHHHHHHHH-TTEECC-CCCTT--CTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred EECCC-CHHHHHHHHHH-CCEEEe-ecCCC--CCCEEEEEcC-CHHHHHHHHHHHHHH
Confidence 99986 56677777665 599999 76543 5789999975 788999999999875
No 50
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=5.3e-44 Score=350.54 Aligned_cols=339 Identities=22% Similarity=0.319 Sum_probs=274.8
Q ss_pred CCeEEeCCCCCCC--CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 72 ARLIRLGIGDTTQ--PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 72 ~~~i~l~~g~~~~--~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
+++|+|+.|.++. .+++.+.+++.+.+.... ....+|++..|..++|+++|+++ ++++++|++|+|+++++.
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~~~al~ 105 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARILREKG--EVALQYSPTEGYAPLRAFVAEWI----GVRPEEVLITTGSQQALD 105 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHH--HHHTSCCCTTCCHHHHHHHHHHH----TSCGGGEEEESHHHHHHH
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHHHhcc--hhhhCCCCCCCCHHHHHHHHHHh----CCChhhEEEeccHHHHHH
Confidence 4689999887653 367889999998886521 12457877789999999999998 678899999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC---CCCccEEE-EcCC
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST---TSRTDIIF-FCSP 223 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~---~~~~~~v~-i~~p 223 (441)
+ +..++++||+|+++.|+|+++...++..| .+++.++.+++ +++++ +++ ..++++|+ +++|
T Consensus 106 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~-~~d~~~l~~~l~~~~~~~v~~~~~~ 172 (397)
T 2zyj_A 106 LVGKVFLDEGSPVLLEAPSYMGAIQAFRLQG------------PRFLTVPAGEE-GPDLDALEEVLKRERPRFLYLIPSF 172 (397)
T ss_dssp HHHHHHCCTTCEEEEEESCCHHHHHHHHTTC------------CEEEEEEEETT-EECHHHHHHHHHHCCCSCEEECCBS
T ss_pred HHHHHhCCCCCEEEEeCCCcHHHHHHHHHcC------------CEEEecCcCCC-CCCHHHHHHHHhhcCCeEEEECCCC
Confidence 7 56778999999999999999999988888 58888888653 32221 221 13788875 5799
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCc---ceeEEEecCCcccCCccceeEEEE
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAR---EVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~---~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
|||||.++|.+++++|+++|++||+++|+||+|+++.+++. +.++..++ .. +++++++|+||.+| +|+|+||++
T Consensus 173 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~-~G~r~G~~~ 250 (397)
T 2zyj_A 173 QNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELA-REAGYPGVIYLGSFSKVLS-PGLRVAFAV 250 (397)
T ss_dssp CTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHH-HHHTCCCEEEEEESTTTTC-GGGCCEEEE
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhC-cccCCCeEEEEeccccccc-ccceeEEEe
Confidence 99999999999999999999999999999999999887643 45565553 22 57899999999999 999999999
Q ss_pred eeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC---CCeeeCCC
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL---GLKVNGGK 376 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g~~~~~~~ 376 (441)
+++++ .+.+.........+++.+.|.++.+++++..+++++++++.++++++.+.+.|++. |+.+..+.
T Consensus 251 ~~~~~--------~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~ 322 (397)
T 2zyj_A 251 AHPEA--------LQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPK 322 (397)
T ss_dssp CCHHH--------HHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCS
T ss_pred cCHHH--------HHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCC
Confidence 99776 45565544444445689999999999986433678899999999999999999885 78887677
Q ss_pred CceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCC--CCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 377 NAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPG--GNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 377 ~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
+|+|+|++++ +.+..++.+.++++ ||.+.||..|+.. +++++||++.. +++++++++++|+++
T Consensus 323 ~g~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~ 389 (397)
T 2zyj_A 323 GGMFVWMELPKGLSAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRA 389 (397)
T ss_dssp BSSEEEEECSTTCCHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 8999999997 44567788887776 9999999988643 46899999865 689999999999875
No 51
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=7.2e-44 Score=353.85 Aligned_cols=348 Identities=20% Similarity=0.293 Sum_probs=276.2
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCC-------CCCCCCCCCcCcHHHHHHHHHHHhh--h--CCCCCCcEEE
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTV-------KGYKGYGAEQGNMALRTAIADKFYK--D--MGIEGDEIFI 140 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~-------~~~~~Y~~~~g~~~lr~~ia~~l~~--~--~~~~~~~I~~ 140 (441)
..+|+|+.+.+++. .+.+.+++.+........ ....+|++..|..+||+++|+++.+ + ..+++++|++
T Consensus 38 ~~~i~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~ 116 (435)
T 3piu_A 38 NGIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVL 116 (435)
T ss_dssp TSBEECSSCCCCSS-HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEE
T ss_pred CCeEEecccccccc-HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEE
Confidence 35899999887664 566666666543321100 0124698889999999999999974 2 3467999999
Q ss_pred cCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH-HhccccccccccCccceeEEeecCCCCCccCCCCC-------
Q 013521 141 SDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV-IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------- 211 (441)
Q Consensus 141 t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------- 211 (441)
|+|+++++.+ +..++++||.|+++.|+|+++...+. ..| .+++.++.++++++..|++.
T Consensus 117 ~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~ 184 (435)
T 3piu_A 117 TAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTG------------VEIVPIHCTSSNGFQITETALEEAYQE 184 (435)
T ss_dssp EEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTC------------CEEEEEECCGGGTSCCCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcC------------CEEEEeeCCCccCCcCCHHHHHHHHHH
Confidence 9999999998 67778999999999999999988776 567 58899998876555555432
Q ss_pred ----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCC---------cce
Q 013521 212 ----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGA---------REV 277 (441)
Q Consensus 212 ----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~---------~~~ 277 (441)
..++++|++++||||||.++|.+++++|+++|++||+++|+||+|..+.+.+. +.++..+... +++
T Consensus 185 ~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 264 (435)
T 3piu_A 185 AEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQR 264 (435)
T ss_dssp HHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGG
T ss_pred HHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCC
Confidence 13789999999999999999999999999999999999999999998777653 3344443222 578
Q ss_pred eEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH--HHHHHHHHHHH
Q 013521 278 AIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QALRTVIDYYK 355 (441)
Q Consensus 278 ~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~ 355 (441)
+++++||||.+|++|+|+||++++++.+ .+.+.... .....+.+.|.++.+++.+..+ +++++++++++
T Consensus 265 ~i~i~s~sK~~g~~G~r~G~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 335 (435)
T 3piu_A 265 VHVVYSLSKDLGLPGFRVGAIYSNDDMV-------VAAATKMS--SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLK 335 (435)
T ss_dssp EEEEEESSSSSCCGGGCEEEEEESCHHH-------HHHHHHHG--GGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeecccCCCceeEEEEEeCCHHH-------HHHHHHHh--hcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 8999999999999999999999966543 34444332 2345788899988888875443 36788899999
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCC-------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CH
Q 013521 356 ENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HR 427 (441)
Q Consensus 356 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~ 427 (441)
++++.+.+.|++.|+++.++.+|+|+|++++.. ...++..++++++||.+.||+.|++.+++++||+++. ++
T Consensus 336 ~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~ 415 (435)
T 3piu_A 336 QRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPE 415 (435)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCH
T ss_pred HHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCH
Confidence 999999999999899988877889999999732 2456778888877999999999988788999999976 89
Q ss_pred HHHHHHHHHHHhhC
Q 013521 428 EYISEACRRLKNFL 441 (441)
Q Consensus 428 ~~~~~~l~~l~~~l 441 (441)
+++++++++|++++
T Consensus 416 e~i~~~l~~l~~~l 429 (435)
T 3piu_A 416 RTLDLAMQRLKAFV 429 (435)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
No 52
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=100.00 E-value=1.4e-44 Score=358.00 Aligned_cols=340 Identities=15% Similarity=0.157 Sum_probs=268.4
Q ss_pred CCeEEeCCCCCCCC---CcHHHHHHH--HHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 72 ARLIRLGIGDTTQP---IPDIITSAM--AEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 72 ~~~i~l~~g~~~~~---~~~~~~~al--~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
..+|+|+.|.|+.. .++.+.+++ .+.+... .....+|++..|..+||++||+|+ ++++++|++|+|+++
T Consensus 33 ~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~ia~~~----~~~~~~i~~t~G~~~ 106 (427)
T 3ppl_A 33 NLKLDLTRGKPSSEQLDFADELLALPGKGDFKAAD--GTDVRNYGGLDGIVDIRQIWADLL----GVPVEQVLAGDASSL 106 (427)
T ss_dssp CCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTT--SCBTTSSCCSSCCHHHHHHHHHHH----TSCGGGEEECSSCHH
T ss_pred CceEecCCCCCChHHCCCcHHHHHHhhhHHHhhcc--chhhcCCCCCCCcHHHHHHHHHHh----CCCcceEEEeCCcHH
Confidence 35799999988643 222344454 3333321 134678988899999999999998 789999999999999
Q ss_pred HH--HH-HHHhcC--C----------CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CC
Q 013521 147 DI--SR-LQMLLG--S----------NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LS 210 (441)
Q Consensus 147 al--~~-l~~l~~--~----------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~ 210 (441)
++ ++ +..+++ | ||+|++++|+|+++...++..| .+++.++++.+ +++++ ++
T Consensus 107 al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~l~ 173 (427)
T 3ppl_A 107 NIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFG------------FEMISVPMNED-GPDMDAVE 173 (427)
T ss_dssp HHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTT------------CEEEEEEEETT-EECHHHHH
T ss_pred HHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcC------------CEEEEeCCCCC-CCCHHHHH
Confidence 99 45 556666 6 8999999999999999999999 58999998764 33322 22
Q ss_pred C---CCCccEEEEc-CCCCccccCCCHHHHHHHHHHH-HHcCcEEEEcccccccccCCC---CCccccc---CCCcceeE
Q 013521 211 T---TSRTDIIFFC-SPNNPTGHAATWQQLKKLVEFA-KANGSIIVYDSAYAAYITDPS---PRSIYEI---PGAREVAI 279 (441)
Q Consensus 211 ~---~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~a-~~~~~~ii~De~~~~~~~~~~---~~~~~~~---~~~~~~~i 279 (441)
+ .+++++|+++ +||||||.++|.+++++|+++| ++||++||+||+|.++.+.+. +.++..+ .+..++++
T Consensus 174 ~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (427)
T 3ppl_A 174 ELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFW 253 (427)
T ss_dssp HHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEE
T ss_pred HHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEE
Confidence 1 3678888866 7899999999999999999999 999999999999999776543 2244443 23467899
Q ss_pred EEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC-CcH-HHHHHHHHHHHHH
Q 013521 280 EISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP-DGF-QALRTVIDYYKEN 357 (441)
Q Consensus 280 ~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~-~~~~~~~~~~~~~ 357 (441)
+++||||+ ++||+|+||+++++++ .+.+.........+++.+.|.++.+++.+ ..+ .++++.++.++++
T Consensus 254 ~~~S~SK~-~~~G~r~G~~~~~~~l--------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (427)
T 3ppl_A 254 AFTSTSKI-TLAGAGVSFFLTSAEN--------RKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPK 324 (427)
T ss_dssp EEEESTTT-SCTTSSCEEEECCHHH--------HHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred EEechhhc-cCcCccEEEEEcCHHH--------HHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHH
Confidence 99999999 5699999999999887 46676666666677899999999999986 333 6788999999999
Q ss_pred HHHHHHHHHhC-----CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeC-CCCcCC---CCCCeEEEEeec-CH
Q 013521 358 AKIIVDAFQSL-----GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIP-GSGFGP---GGNEHIRVSAFG-HR 427 (441)
Q Consensus 358 ~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~---~~~~~iRls~~~-~~ 427 (441)
++.+.+.|.+. ++.+..+.+|+|+|++++..+..++... ++++||.+.| |..|.. ..++++||+++. ++
T Consensus 325 ~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~-l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~ 403 (427)
T 3ppl_A 325 FNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAEL-AKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPV 403 (427)
T ss_dssp HHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTCHHHHHHH-HHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCH
T ss_pred HHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcchHHHHHHH-HHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCH
Confidence 99998888652 4777777899999999986555666555 5566999999 555642 357899999966 78
Q ss_pred HHHHHHHHHHHhh
Q 013521 428 EYISEACRRLKNF 440 (441)
Q Consensus 428 ~~~~~~l~~l~~~ 440 (441)
+++++++++|+++
T Consensus 404 ~~i~~~~~~l~~~ 416 (427)
T 3ppl_A 404 EELEVAMDGVATC 416 (427)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 53
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=1.1e-42 Score=337.06 Aligned_cols=328 Identities=18% Similarity=0.244 Sum_probs=264.8
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
++++|+|+.|.+++++++.+.+++.+.+.. ..+|++ .|..++|+++|+++ ++++++|++|+|+++++.+
T Consensus 23 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~------~~~y~~-~~~~~l~~~la~~~----~~~~~~v~~~~g~~~al~~ 91 (364)
T 1lc5_A 23 PDQLLDFSANINPLGMPVSVKRALIDNLDC------IERYPD-ADYFHLHQALARHH----QVPASWILAGNGETESIFT 91 (364)
T ss_dssp GGGSEECSSCCCTTCCCHHHHHHHHHTGGG------GGSCCC-TTCHHHHHHHHHHH----TSCGGGEEEESSHHHHHHH
T ss_pred ccceEEeccccCCCCCCHHHHHHHHHHHHH------hhcCCC-CCHHHHHHHHHHHH----CcCHHHEEECCCHHHHHHH
Confidence 346899999998888889999999887653 346754 58999999999997 7888999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCC
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNN 225 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~N 225 (441)
+...+ +||+|+++.|+|+++...+...| .+++.++.+.++++.. ++. .++++++++++|||
T Consensus 92 ~~~~~-~gd~vl~~~p~y~~~~~~~~~~g------------~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~n 157 (364)
T 1lc5_A 92 VASGL-KPRRAMIVTPGFAEYGRALAQSG------------CEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNN 157 (364)
T ss_dssp HHHHH-CCSEEEEEESCCTHHHHHHHHTT------------CEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCT
T ss_pred HHHHc-CCCeEEEeCCCcHHHHHHHHHcC------------CeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCC
Confidence 54444 78999999999999999998888 5888888875334543 231 26789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE-eeccc
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV-VPEEL 304 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~-~~~~~ 304 (441)
|||.++|.+++++|+++|++||+++|+||+|.++.+++ .+.....+..++++++.|+||.+|++|+|+||++ +++++
T Consensus 158 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 235 (364)
T 1lc5_A 158 PTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHE--TGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAA 235 (364)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTC--CCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHH
T ss_pred CCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCc--cchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHH
Confidence 99999999999999999999999999999999887652 2222322234678999999999999999999999 88776
Q ss_pred cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEE
Q 013521 305 RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWV 383 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 383 (441)
.+.+..... ..+++.+.|.++.+++++ ..++++.++.++++++.+.+.|+++ |+.+.+ +.|+|+|+
T Consensus 236 --------~~~l~~~~~--~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~ 302 (364)
T 1lc5_A 236 --------MARMRRQQM--PWSVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTVYP-GRANYLLL 302 (364)
T ss_dssp --------HHHHHHHSC--TTCSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECC-CSSSEEEE
T ss_pred --------HHHHHHhCC--CCCCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECC-CCCeEEEE
Confidence 345544332 345789999999999975 3678999999999999999999988 888765 57889999
Q ss_pred EcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 384 QFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+++. ...++.+.+++ +||.+.||+.|+..+++++||++. ++++++++++.|++++
T Consensus 303 ~~~~-~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 357 (364)
T 1lc5_A 303 RCER-EDIDLQRRLLT-QRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 357 (364)
T ss_dssp EESC-TTCCHHHHHHT-TTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred ECCC-cHHHHHHHHHH-CCcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHh
Confidence 9874 23467777665 599999999987656789999975 5777788888777653
No 54
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=100.00 E-value=1e-43 Score=350.90 Aligned_cols=336 Identities=17% Similarity=0.214 Sum_probs=264.0
Q ss_pred CCCCeEEeCCCCC-----CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCC
Q 013521 70 PDARLIRLGIGDT-----TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDG 143 (441)
Q Consensus 70 ~~~~~i~l~~g~~-----~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G 143 (441)
++.++|+|+.|.| ++++++.+.+++.+... ....+|++..|..++|+++++++.+..+. .+++|++|+|
T Consensus 36 g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g 110 (418)
T 3rq1_A 36 GRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSD-----SEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAG 110 (418)
T ss_dssp CGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCH-----HHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESH
T ss_pred cCCCeEECCCCcccCCCCCccccHHHHHHHHHhcc-----cccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCc
Confidence 3457999999976 67788888888766332 23457988889999999999998653321 1239999999
Q ss_pred cHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C----C
Q 013521 144 AQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T----S 213 (441)
Q Consensus 144 ~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~----~ 213 (441)
+++++.+ +..++++||+|++++|+|+++...+...| .+++.+++++++ +..+++. . +
T Consensus 111 ~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~ 177 (418)
T 3rq1_A 111 GTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTG------------RTLVTYSLFDEH-NNFNHEAFQNRVNELAAK 177 (418)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTT------------CEEEEECSBCTT-SSBCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcC------------CEEEEEeeeCCC-CCcCHHHHHHHHHHhhcc
Confidence 9999998 67788999999999999999999999998 589999986543 3334322 1 1
Q ss_pred Ccc-EEEEcCC-CCccccCCCHHHHHHHHHHHH------HcCcEEEEcccccccccCCC-CCcccc-cCCCcce--eEEE
Q 013521 214 RTD-IIFFCSP-NNPTGHAATWQQLKKLVEFAK------ANGSIIVYDSAYAAYITDPS-PRSIYE-IPGAREV--AIEI 281 (441)
Q Consensus 214 ~~~-~v~i~~p-~NPtG~~~~~~~~~~i~~~a~------~~~~~ii~De~~~~~~~~~~-~~~~~~-~~~~~~~--~i~i 281 (441)
+++ ++++++| |||||.++|.+++++|+++|+ +||++||+||+|.+|.+++. +.++.. .++.+++ ++++
T Consensus 178 ~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 257 (418)
T 3rq1_A 178 QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVC 257 (418)
T ss_dssp CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEE
T ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEE
Confidence 555 7888899 999999999999999999999 89999999999998887643 223322 3333344 5899
Q ss_pred ecCCcccCCccceeEEEEe---eccccccCCchhHHHHHHHHh----hhcCCCcHHHHHHHHHhcCCCc----H-HHHHH
Q 013521 282 SSFSKFAGFTGVRLGWTVV---PEELRYSNGYPVIKDFNRIVC----TCFNGASNIVQAGGLACLSPDG----F-QALRT 349 (441)
Q Consensus 282 ~S~SK~~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~ 349 (441)
+||||.+|++|+|+||+++ ++++ ++.+..... ..+..++.++|.++.+++++.. + +++++
T Consensus 258 ~S~sK~~~~~G~r~G~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 329 (418)
T 3rq1_A 258 YSLSKGFTMYGQRVGAMIGISDDEEI--------ADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNC 329 (418)
T ss_dssp EESTTTTTCCSSCCEEEEEEESSHHH--------HHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred EeCCCCCcCcCCcceEEEEEeCCHHH--------HHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999998 6666 344544332 2334578899999999998643 2 34567
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHH
Q 013521 350 VIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HRE 428 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~ 428 (441)
+++.++++++.+.+.|+++|+++.++.+++|+|++++ +..++.+. ++++||.+.|| .+++||+++. +++
T Consensus 330 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~-l~~~gi~v~~g-------~~~iRis~~~~~~~ 399 (418)
T 3rq1_A 330 YYQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTD--SANAICEE-LKKEHIYVIAL-------ANGIRIAACGIPKC 399 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCSSSEEEEECT--THHHHHHH-HHHTTEECEEC-------SSEEEEEGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEcCCC--CHHHHHHH-HHhCCEEEecC-------CCCeEEEEecCCHH
Confidence 7889999999999999988998888888999999885 55677665 55679999997 3589999874 899
Q ss_pred HHHHHHHHHHhhC
Q 013521 429 YISEACRRLKNFL 441 (441)
Q Consensus 429 ~~~~~l~~l~~~l 441 (441)
++++++++|++++
T Consensus 400 ~i~~~~~~l~~~l 412 (418)
T 3rq1_A 400 QMTGLAEKIYNAM 412 (418)
T ss_dssp HHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 55
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=1.9e-42 Score=334.95 Aligned_cols=326 Identities=17% Similarity=0.289 Sum_probs=263.7
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
++++|+|+.|++++++|+.+.+++.+.+.... ....+|++ .+..++|+++|+++ ++++++|++|+|+++++.+
T Consensus 25 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~-~~~~~lr~~la~~~----g~~~~~i~~t~g~~~al~~ 97 (360)
T 3hdo_A 25 IASWIKLNTNENPYPPSPEVVKAILEELGPDG--AALRIYPS-ASSQKLREVAGELY----GFDPSWIIMANGSDEVLNN 97 (360)
T ss_dssp CTTSEECSSCCCSSCCCHHHHHHHHHHHTTTC--GGGGSCCC-SSCHHHHHHHHHHH----TCCGGGEEEESSHHHHHHH
T ss_pred ccceeeccCCCCCCCCCHHHHHHHHHHHhccc--chhhcCCC-CchHHHHHHHHHHh----CcCcceEEEcCCHHHHHHH
Confidence 35799999999999999999999999886421 12557754 47799999999997 7889999999999999998
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCcccc
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~ 229 (441)
+..++++||+|+++.|+|+++...+...| .+++.++.+++..+ .++.+..+++++++++|+||||.
T Consensus 98 ~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~-~~l~~~~~~~~v~i~~p~nptG~ 164 (360)
T 3hdo_A 98 LIRAFAAEGEEIGYVHPSYSYYGTLAEVQG------------ARVRTFGLTGDFRI-AGFPERYEGKVFFLTTPNAPLGP 164 (360)
T ss_dssp HHHHHCCTTCEEEEESSSCTHHHHHHHHHT------------CEEEEECBCTTSSB-TTCCSSBCSSEEEEESSCTTTCC
T ss_pred HHHHHhCCCCEEEEcCCChHHHHHHHHHCC------------CEEEEeeCCCCCCH-HHHHhhcCCCEEEEeCCCCCCCC
Confidence 67778999999999999999999999998 58899998765444 34444346789999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~ 309 (441)
++|.+ +|.++|+++|+++|+||+|++|... .+.++.. ..+++++++||||.+|++|+|+||+++++++
T Consensus 165 ~~~~~---~l~~l~~~~~~~li~De~~~~~~~~-~~~~~~~---~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~----- 232 (360)
T 3hdo_A 165 SFPLE---YIDELARRCAGMLVLDETYAEFAES-NALELVR---RHENVVVTRTLSKSYSLAGMRIGLAIARPEV----- 232 (360)
T ss_dssp CCCHH---HHHHHHHHBSSEEEEECTTGGGSSC-CCTHHHH---HCSSEEEEEESTTTTSCTTSCCEEEECCHHH-----
T ss_pred CcCHH---HHHHHHHHCCCEEEEECChHhhCCc-chhHHhc---cCCCEEEEecchHhhcCCccceeeEeeCHHH-----
Confidence 99955 5566667899999999999987432 1222222 2467899999999999999999999998776
Q ss_pred chhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCC
Q 013521 310 YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSS 389 (441)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 389 (441)
.+.+..... ..+.+.+.|.++.+++++ .+++++.+++++++++.+.+.|+++|+.+.+ +.++|+|+.+++.+
T Consensus 233 ---~~~~~~~~~--~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~ 304 (360)
T 3hdo_A 233 ---IAALDKIRD--HYNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIP-SQGNYLFATPPDRD 304 (360)
T ss_dssp ---HHHHHHHSC--SCCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECC-CSSSEEEEECTTCC
T ss_pred ---HHHHHHhCC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcC-CCccEEEEECCCCC
Confidence 455554432 345889999999999975 4568899999999999999999988888765 57889999998666
Q ss_pred hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 390 SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 390 ~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
..++.+.+. ++||.++|+.. +..++++||++. ++++++++++.|+++
T Consensus 305 ~~~l~~~l~-~~gi~v~~~~~--~~~~~~iRis~~-~~~e~~~l~~al~~~ 351 (360)
T 3hdo_A 305 GKRVYDGLY-ARKVLVRHFSD--PLLAHGMRISIG-TREEMEQTLAALKEI 351 (360)
T ss_dssp HHHHHHHHH-HTTEECBCCCS--TTTTTSEEEECC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCEEEEECCC--CCCCCEEEEEcC-CHHHHHHHHHHHHHH
Confidence 777777765 45999999875 345689999986 788999999998864
No 56
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=100.00 E-value=6.5e-45 Score=356.02 Aligned_cols=328 Identities=17% Similarity=0.215 Sum_probs=253.7
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCc-----HHHHHHHHHHHhh-hCCCCC-CcEEEcCC
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGN-----MALRTAIADKFYK-DMGIEG-DEIFISDG 143 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~-----~~lr~~ia~~l~~-~~~~~~-~~I~~t~G 143 (441)
+.++|+|+.|.|+++.|+.+.+++.+.... .......+|++..|. .+||+++|+|+.. +..+++ ++|++|+|
T Consensus 21 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~t~G 99 (391)
T 3bwn_A 21 SDFVVNLDHGDPTAYEEYWRKMGDRCTVTI-RGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTG 99 (391)
T ss_dssp TTSCEECSSCCCGGGHHHHHHTGGGSCEEE-CTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEEEEH
T ss_pred CCCeeEcCCCCCCCCCCHHHHHhHHHHhhc-CccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEEeCC
Confidence 457899999999876666655555332211 111255689888998 9999999999874 566666 59999999
Q ss_pred cHHHHHH-HHHhcCCCC----EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEE
Q 013521 144 AQSDISR-LQMLLGSNV----TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDII 218 (441)
Q Consensus 144 ~~~al~~-l~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v 218 (441)
+++++.+ +..++++|| +|++++|+|+++...++..| .+++.++++.+ ++. .+++++|
T Consensus 100 ~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g------------~~~~~~~~d~~-~l~-----~~~~k~v 161 (391)
T 3bwn_A 100 STQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVR------------SGMYKWEGDAW-GFD-----KKGPYIE 161 (391)
T ss_dssp HHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTC------------BTTEEEEEEST-TCC-----CCSCEEE
T ss_pred hHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcC------------CeEEEecCCHH-HcC-----CCCCEEE
Confidence 9999998 567789999 99999999999999999888 46777777653 332 2578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++++||||||.+++ +|++.++.++++||+||+|.+ +...++.. ..+++|+++||||.+|++|+|+||+
T Consensus 162 ~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~----~~~~~l~~---~~~~~i~~~S~SK~~g~~GlRiG~~ 229 (391)
T 3bwn_A 162 LVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW----PHYTPITR---RQDHDIMLFTFSKITGHAGSRIGWA 229 (391)
T ss_dssp EEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS----TTTSCCCC---CBCCSEEEEEHHHHHSCGGGCEEEE
T ss_pred EECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC----CCCCcccc---CCCCeEEEEechhhcCCCccceEEE
Confidence 99999999999997 455522333499999999983 11222221 3578999999999999999999999
Q ss_pred Ee-eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc---------HHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 299 VV-PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG---------FQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 299 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
++ ++++ ++.+...+.....+++.+.|.++.+++++.. ..+++++++.++++++.+.+.|+++
T Consensus 230 ~~~~~~l--------~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 301 (391)
T 3bwn_A 230 LVKDKEV--------AKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKES 301 (391)
T ss_dssp EECCHHH--------HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EecCHHH--------HHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98 6666 4666666655556689999999999997431 3578999999999999999999987
Q ss_pred -CCeeeCC-------------CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHH
Q 013521 369 -GLKVNGG-------------KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEAC 434 (441)
Q Consensus 369 -g~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l 434 (441)
++.+..+ ++|+|+|++++.. +.+..+++++||.+.||+.|+. +++++|||++.+++++++++
T Consensus 302 ~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~---~~~~~~l~~~gV~v~pg~~fg~-~~~~iRis~~~~~e~i~~~~ 377 (391)
T 3bwn_A 302 DAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE---TDLVSELRRHKVMSRAGERCGS-DKKHVRVSMLSREDVFNVFL 377 (391)
T ss_dssp SSEECCCCCCEEETTTTEEECCCCSEEEEEESSS---CCHHHHHHHTTEECEEGGGGTC-CTTEEEEESCSCHHHHHHHH
T ss_pred CCcccccCCccccccccccCCCcceEEEecCCcH---HHHHHHHHHCCEEEccCCCCCC-CCCEEEEEecCCHHHHHHHH
Confidence 6665432 4566999999742 3456667778999999999975 57899999988899999999
Q ss_pred HHHHhhC
Q 013521 435 RRLKNFL 441 (441)
Q Consensus 435 ~~l~~~l 441 (441)
++|++++
T Consensus 378 ~~L~~~~ 384 (391)
T 3bwn_A 378 ERLANMK 384 (391)
T ss_dssp HHHHSCC
T ss_pred HHHHHHH
Confidence 9998764
No 57
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=100.00 E-value=4e-43 Score=339.25 Aligned_cols=318 Identities=19% Similarity=0.275 Sum_probs=256.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
++|+|+.|++++++|+.+ ++ ....+|++. +..++|+++|+++ ++++++|++|+|+++++.+ +
T Consensus 30 ~~i~l~~~~~~~~~~~~v------a~------~~~~~Y~~~-~~~~lr~~la~~~----~~~~~~v~~~~G~~~ai~~~~ 92 (356)
T 1fg7_A 30 GDVWLNANEYPTAVEFQL------TQ------QTLNRYPEC-QPKAVIENYAQYA----GVKPEQVLVSRGADEGIELLI 92 (356)
T ss_dssp CSEECSSCCCSSCCCCCC------CC------CCTTSCCCS-SCHHHHHHHHHHH----TSCGGGEEEESHHHHHHHHHH
T ss_pred ceEEeeCCCCCCCCCHhH------hh------hhhccCCCc-cHHHHHHHHHHHh----CCChHHEEEcCCHHHHHHHHH
Confidence 589999999998877765 11 345678654 6899999999997 7888999999999999997 5
Q ss_pred HHhcCCC-CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C-CCCccEEEEcCCCCc
Q 013521 152 QMLLGSN-VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T-TSRTDIIFFCSPNNP 226 (441)
Q Consensus 152 ~~l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~-~~~~~~v~i~~p~NP 226 (441)
..++++| |+|+++.|+|+++...++..| .+++.++.+.+ +..|++ + ..++++|++++||||
T Consensus 93 ~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~--~~~d~~~l~~~i~~~~~v~l~~p~np 158 (356)
T 1fg7_A 93 RAFCEPGKDAILYCPPTYGMYSVSAETIG------------VECRTVPTLDN--WQLDLQGISDKLDGVKVVYVCSPNNP 158 (356)
T ss_dssp HHHCCTTTCEEEECSSSCTHHHHHHHHHT------------CEEEECCCCTT--SCCCHHHHHTSCTTEEEEEEESSCTT
T ss_pred HHHhCCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEeeCCCC--CCCCHHHHHHHhcCCCEEEEeCCCCC
Confidence 6778999 999999999999999999888 58888888643 233322 1 127899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
||.++|.+++++|+++|+ +|+++|+||+|.++... .++..+.+..+++++++||||.+|++|+|+||+++++++
T Consensus 159 tG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~---~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~-- 232 (356)
T 1fg7_A 159 TGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ---ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEV-- 232 (356)
T ss_dssp TCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG---GCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHH--
T ss_pred CCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC---CcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHH--
Confidence 999999999999999999 99999999999987621 233333223467899999999999999999999998877
Q ss_pred cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCceEEEEEc
Q 013521 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-LKVNGGKNAPYVWVQF 385 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~ 385 (441)
++.+..... .++++.+.|.++.+++++.+++++++.+++++++++.+.+.|++++ +....+.+++|+|+++
T Consensus 233 ------~~~l~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 304 (356)
T 1fg7_A 233 ------INLLMKVIA--PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARF 304 (356)
T ss_dssp ------HHHHHHHSC--SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEE
T ss_pred ------HHHHHHhcC--CCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEEC
Confidence 355554332 2358899999999999854444588999999999999999999885 3233346889999999
Q ss_pred CCCChHHHHHHHHHhcCeEEeC-CCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 386 PGSSSWDVFAEILEKTHILTIP-GSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 386 ~~~~~~~~~~~ll~~~gi~v~p-g~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+ +..++.+.| .++||.++| |..|+. ++++||++. +++++++++++|++++
T Consensus 305 ~--~~~~l~~~L-~~~gI~v~~~g~~~~~--~~~iRis~~-~~~e~~~~~~~l~~~~ 355 (356)
T 1fg7_A 305 K--ASSAVFKSL-WDQGIILRDQNKQPSL--SGCLRITVG-TREESQRVIDALRAEQ 355 (356)
T ss_dssp T--THHHHHHHH-HHTTEECEECTTSTTC--TTEEEEECC-CHHHHHHHHHHHHTCC
T ss_pred C--CHHHHHHHH-HHCCEEEEECCCCCCC--CCeEEEEeC-CHHHHHHHHHHHHhhc
Confidence 7 566777777 456999999 887764 469999986 5889999999998763
No 58
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=1.7e-42 Score=335.17 Aligned_cols=328 Identities=16% Similarity=0.240 Sum_probs=265.9
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
++++|+|+.|.+++++|+.+.+++.+.+.. ..+| +..+..++|+++|+++ ++++++|++|+|+++++.+
T Consensus 25 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~------~~~y-~~~~~~~l~~~la~~~----~~~~~~i~~~~g~t~al~~ 93 (361)
T 3ftb_A 25 GRELLDYSSNINPLGIPKSFLNNIDEGIKN------LGVY-PDVNYRRLNKSIENYL----KLKDIGIVLGNGASEIIEL 93 (361)
T ss_dssp ---CEETTCCCCTTCSCHHHHTTHHHHHHG------GGSC-CCTTCHHHHHHHHHHH----TCCSCEEEEESSHHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHHH------hcCC-CCccHHHHHHHHHHHh----CCCcceEEEcCCHHHHHHH
Confidence 457999999999998899999999998864 2457 4568899999999997 7889999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCcc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPT 227 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPt 227 (441)
+...+ |+|+++.|+|+++...+...| .+++.++.+.++++.++ +++ .+ ++++++++|||||
T Consensus 94 ~~~~~---d~vi~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~npt 157 (361)
T 3ftb_A 94 SISLF---EKILIIVPSYAEYEINAKKHG------------VSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPN 157 (361)
T ss_dssp HHTTC---SEEEEEESCCTHHHHHHHHTT------------CEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTT
T ss_pred HHHHc---CcEEEecCChHHHHHHHHHcC------------CeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCC
Confidence 65555 899999999999999999988 58999999876555442 221 23 8999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE-eeccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV-VPEELRY 306 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~-~~~~~~~ 306 (441)
|.++|.+++++|+++|++||+++|+||+|.++.++ .+.+.....+..+++++++|+||.+|++|+|+||++ .++++
T Consensus 158 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~-- 234 (361)
T 3ftb_A 158 GGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEI-- 234 (361)
T ss_dssp TBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHH--
T ss_pred CCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHH--
Confidence 99999999999999999999999999999998876 334444444445778999999999999999999999 66665
Q ss_pred cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eeCCCCceEEEEE
Q 013521 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLK-VNGGKNAPYVWVQ 384 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~~~~ 384 (441)
.+.+..... ..+.+.+.|.++.+++++ .+++++.+++++++++.+.+.|+++ ++. +.+ +.|.|+|++
T Consensus 235 ------~~~~~~~~~--~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~ 303 (361)
T 3ftb_A 235 ------AAKIKAKQN--PWNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRVFS-PHANFVLCR 303 (361)
T ss_dssp ------HHHHHTTSC--TTCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEC-CSSSEEEEE
T ss_pred ------HHHHHhhCC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecC-CCCeEEEEE
Confidence 345544332 346789999999999984 4678999999999999999999988 787 655 578899999
Q ss_pred cCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCH--HHHHHHHHHHHhh
Q 013521 385 FPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHR--EYISEACRRLKNF 440 (441)
Q Consensus 385 ~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~--~~~~~~l~~l~~~ 440 (441)
++..+..++...++++ ||.+.||+.|+..+++++||++...+ +++.++++++.+.
T Consensus 304 ~~~~~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 304 LENISGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIKDEKKNTKFLRALKGVENN 360 (361)
T ss_dssp ESSSCHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 9865667787877766 99999999998777899999986422 3455555555543
No 59
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=4.6e-43 Score=344.95 Aligned_cols=344 Identities=21% Similarity=0.294 Sum_probs=275.7
Q ss_pred CCCeEEeCCCCCCCC--CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEEcCCcHH
Q 013521 71 DARLIRLGIGDTTQP--IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~--~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~t~G~~~ 146 (441)
+.++|+|+.|.++.. +++.+.+++.+.+.... .... |++..|..++|+++|+++.+.++ +++++|++|+|+++
T Consensus 33 g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~--~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~ 109 (407)
T 2zc0_A 33 GVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEP--KSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTG 109 (407)
T ss_dssp SCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCG--GGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHH
T ss_pred CCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcc--cccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHH
Confidence 457899999886543 67889999999887532 2345 88888999999999999976334 77899999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C------CCcc
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T------SRTD 216 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~------~~~~ 216 (441)
++.+ +..++++||+|+++.|+|+++...+...| .+++.++.+++ +++++ +++ . ++++
T Consensus 110 a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~~ 176 (407)
T 2zc0_A 110 ALDLLGRVLIDPGDVVITENPSYINTLLAFEQLG------------AKIEGVPVDND-GMRVDLLEEKIKELKAKGQKVK 176 (407)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTT------------CEEEEEEEETT-EECHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcC------------CEEEEcccCCC-CCCHHHHHHHHHhhhcccCCce
Confidence 9998 56778999999999999999998888888 58888888654 33222 211 1 2788
Q ss_pred EEE-EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccce
Q 013521 217 IIF-FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 217 ~v~-i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
+|+ +++||||||.++|.+++++|+++|++||+++|+||+|+.+.+++. +.++..++ ..+++++++||||.++ +|+|
T Consensus 177 ~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~-~G~r 254 (407)
T 2zc0_A 177 LIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALD-NEGRVIVAGTLSKVLG-TGFR 254 (407)
T ss_dssp EEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGC-SSCCEEEEEESTTTTC-TTSC
T ss_pred EEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcC-CCCCEEEEcccccccC-CCcc
Confidence 875 569999999999999999999999999999999999999877543 34565553 2357899999999999 9999
Q ss_pred eEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHHHHHHhC--CC
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF--QALRTVIDYYKENAKIIVDAFQSL--GL 370 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~--g~ 370 (441)
+||+++++++ .+.+.........+++.+.|.++.++++.... .++++.++.++++++.+.+.|++. ++
T Consensus 255 ~G~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 326 (407)
T 2zc0_A 255 IGWIIAEGEI--------LKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNA 326 (407)
T ss_dssp CEEEECCHHH--------HHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred eEEEecCHHH--------HHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999998776 45566555444455788999999888875322 456788899999999999999874 67
Q ss_pred eeeCCCCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCC--CCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 371 KVNGGKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPG--GNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 371 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~--~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
.+..+.+++|+|++++ +.+..++.+.+++++||.+.||..|... +++++||++.. +++++++++++|+++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~ 400 (407)
T 2zc0_A 327 EFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKL 400 (407)
T ss_dssp CBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHH
T ss_pred EEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 7766678899999997 4466778888777669999999988653 46899999865 689999999999875
No 60
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=100.00 E-value=1.3e-43 Score=350.27 Aligned_cols=337 Identities=17% Similarity=0.174 Sum_probs=264.0
Q ss_pred CCCeEEeCCC---CCCCCC--cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCC--cEEEc
Q 013521 71 DARLIRLGIG---DTTQPI--PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGD--EIFIS 141 (441)
Q Consensus 71 ~~~~i~l~~g---~~~~~~--~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~--~I~~t 141 (441)
.+++|+|+.| +|+.++ ++.+.+++.+.+.. ....+|++..|..++|+++++++.+..+ ++++ +|++|
T Consensus 48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t 123 (420)
T 4f4e_A 48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEA----GLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQA 123 (420)
T ss_dssp CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhcc----CCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEEC
Confidence 4579999999 565544 48999999998875 3556898889999999999999965222 3678 99999
Q ss_pred CCcHHHHHHH---HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-------
Q 013521 142 DGAQSDISRL---QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------- 211 (441)
Q Consensus 142 ~G~~~al~~l---~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------- 211 (441)
+|+++++.++ ..++++||+|++++|+|+++...+...| .+++.++..++.++.+|++.
T Consensus 124 ~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~ 191 (420)
T 4f4e_A 124 LGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAG------------FEVVAYPYYDAKTNGVNFDGMLAALNG 191 (420)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTT------------CCEEEEECEETTTTEECHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcC------------CeEEEeeeeccccCccCHHHHHHHHHh
Confidence 9999999874 3567999999999999999999999998 58888888322233333221
Q ss_pred -CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC--CCcccccCCCcceeEEEecCCccc
Q 013521 212 -TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS--PRSIYEIPGAREVAIEISSFSKFA 288 (441)
Q Consensus 212 -~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~--~~~~~~~~~~~~~~i~i~S~SK~~ 288 (441)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. +.++..+.+..+++++++||||.+
T Consensus 192 ~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 271 (420)
T 4f4e_A 192 YEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSF 271 (420)
T ss_dssp CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccC
Confidence 15678888899999999999999999999999999999999999999988642 344544443457899999999999
Q ss_pred CCccceeEEEEee--c-cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHHH
Q 013521 289 GFTGVRLGWTVVP--E-ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVIDYYKENAKI 360 (441)
Q Consensus 289 ~~~G~r~G~l~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~ 360 (441)
|++|+|+||+++. + +.+. ++...+.......+.+++.+.|.++.+++.+.. .+++++++++++++++.
T Consensus 272 ~~~G~RiG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (420)
T 4f4e_A 272 SLYGERVGALSIITDSKDEAA----RVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNG 347 (420)
T ss_dssp TCGGGCEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCcEEEEEEcCCHHHHH----HHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999752 2 2210 001223333334555678888988888887543 35689999999999999
Q ss_pred HHHHHHhC----CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHH
Q 013521 361 IVDAFQSL----GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACR 435 (441)
Q Consensus 361 l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~ 435 (441)
+.+.|+++ ++.+..+.+|+|+|+.++ .+.+..+++++||.+.|+ .||+++. ++++++++++
T Consensus 348 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~l~~~gI~v~~~----------~Ris~~~~~~~~i~~~~~ 413 (420)
T 4f4e_A 348 LVERLKAAGIERDFSFINAQRGMFSYSGLT----SAQVDRLREEFGIYAVST----------GRICVAALNTRNLDVVAN 413 (420)
T ss_dssp HHHHHHHTTCSSCCTHHHHSCSSEEECCCC----HHHHHHHHHHHCEECCTT----------SEEEGGGCCTTTHHHHHH
T ss_pred HHHHHHhcCCCCCceeECCCccEEEEeCCC----HHHHHHHHHhCCEEecCC----------CeEEEecCCHHHHHHHHH
Confidence 99999987 677777789999998874 355677777789999985 2999865 7888999999
Q ss_pred HHHhhC
Q 013521 436 RLKNFL 441 (441)
Q Consensus 436 ~l~~~l 441 (441)
+|++++
T Consensus 414 ~l~~~l 419 (420)
T 4f4e_A 414 AIAAVL 419 (420)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998863
No 61
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=100.00 E-value=5e-44 Score=351.14 Aligned_cols=338 Identities=14% Similarity=0.136 Sum_probs=258.6
Q ss_pred CCCCeEEeCCCCC-CCCCc----HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEE--
Q 013521 70 PDARLIRLGIGDT-TQPIP----DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFI-- 140 (441)
Q Consensus 70 ~~~~~i~l~~g~~-~~~~~----~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~-- 140 (441)
..+++|+|+.|.| +...+ +.+.+++.+.... ....+|.+..|..++|+++|+|+.+..+ +++++|++
T Consensus 26 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~ 101 (401)
T 7aat_A 26 TNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK----KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQ 101 (401)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT----TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCCceeeeeeeEECCCCCEechHHHHHHHHHhccc----ccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEe
Confidence 3456899999997 65433 3566666665542 3566898888999999999999975333 56899987
Q ss_pred cCCcHHHHHH-HHHh---cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC-------
Q 013521 141 SDGAQSDISR-LQML---LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL------- 209 (441)
Q Consensus 141 t~G~~~al~~-l~~l---~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~------- 209 (441)
|+|+++++++ +..+ +++||.|++++|+|+++...++..| .+++.++++.+.++..++
T Consensus 102 t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l 169 (401)
T 7aat_A 102 GISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAG------------LQLQAYRYYDPKTCSLDFTGAMEDI 169 (401)
T ss_dssp EEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTT------------CEEEEEECEETTTTEECHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcC------------CeeEeeeeeccccCccCHHHHHHHH
Confidence 9999999997 3333 4899999999999999999999998 588888885432322332
Q ss_pred CC-CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC---CCcccccCCCcceeEEEecCC
Q 013521 210 ST-TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS---PRSIYEIPGAREVAIEISSFS 285 (441)
Q Consensus 210 ~~-~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~---~~~~~~~~~~~~~~i~i~S~S 285 (441)
+. .++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+.+..+++++++|||
T Consensus 170 ~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~s 249 (401)
T 7aat_A 170 SKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYA 249 (401)
T ss_dssp TTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECT
T ss_pred HhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCC
Confidence 22 35788999999999999999999999999999999999999999999887642 223333222356789999999
Q ss_pred cccCCccceeEEEEeec---cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHH
Q 013521 286 KFAGFTGVRLGWTVVPE---ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVIDYYKEN 357 (441)
Q Consensus 286 K~~~~~G~r~G~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~ 357 (441)
|.+|++|+|+||++++. +.. ..+.+.+.......+.+++...|.++..++.+.. .+++++++++++++
T Consensus 250 K~~~~~G~RiG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (401)
T 7aat_A 250 KNMGLYGERAGAFTVICRDAEEA----KRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISM 325 (401)
T ss_dssp TTSCCGGGCEEEEEEECSSHHHH----HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCceEEEEEEeCCHHHH----HHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999732 210 0013444444455555677788887777776532 35678889999999
Q ss_pred HHHHHHHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHH
Q 013521 358 AKIIVDAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISE 432 (441)
Q Consensus 358 ~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~ 432 (441)
++.+.+.|++++ +.+..+.+++|+|++++ .+++..+++++||.+.|+ +||+++. +.+++++
T Consensus 326 r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~gi~v~~~----------~Ris~~~~~~~~i~~ 391 (401)
T 7aat_A 326 RTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK----PEQVERLTKEFSIYMTKD----------GRISVAGVASSNVGY 391 (401)
T ss_dssp HHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC----HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHH
T ss_pred HHHHHHHHHhcCCCCCCceecCCcceEEecCCC----HHHHHHHHHhCCEeccCC----------CeEEeccCChhhHHH
Confidence 999999999875 66666788999998774 456678888889999764 6999854 6677999
Q ss_pred HHHHHHhhC
Q 013521 433 ACRRLKNFL 441 (441)
Q Consensus 433 ~l~~l~~~l 441 (441)
++++|++++
T Consensus 392 ~~~~l~~~~ 400 (401)
T 7aat_A 392 LAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998763
No 62
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=100.00 E-value=3.8e-43 Score=338.55 Aligned_cols=323 Identities=17% Similarity=0.284 Sum_probs=256.4
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+++++||+.|++++++++.+.+++.+.+. ...+|++..+ .++|+++|+++ ++++++|++|+|+++++.+
T Consensus 14 g~~~id~~~~~~~~~~~~~v~~a~~~~~~------~~~~y~~~~~-~~lr~~la~~~----~~~~~~i~~t~g~~~al~~ 82 (350)
T 3fkd_A 14 SSEIVNFSTTVWTDGDKDHLEKHLVENLN------CIRHYPEPDA-GTLRQMLAKRN----SVDNNAILVTNGPTAAFYQ 82 (350)
T ss_dssp --CCEECSCCSCCCSCCHHHHHHHHHTGG------GGGSCCCTTC-HHHHHHHHHHT----TCCGGGEEEESHHHHHHHH
T ss_pred cccEEEccCCCCCCCCCHHHHHHHHHhHh------HHhcCCCCcH-HHHHHHHHHHh----CcCHHHEEEcCCHHHHHHH
Confidence 35799999999999999999999988763 2346866656 89999999996 7889999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeec-CCCCCccCCCCCCCCccEEEEcCCCCcccc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNC-RPENNFFPDLSTTSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~-~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~ 229 (441)
+...+. ||+|+++.|+|+++...++..| .+++.++. ++++++.+ +++++|++++||||||.
T Consensus 83 ~~~~l~-gd~Vi~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~-----~~~~~v~i~~p~nptG~ 144 (350)
T 3fkd_A 83 IAQAFR-GSRSLIAIPSFAEYEDACRMYE------------HEVCFYPSNEDIGEADF-----SNMDFCWLCNPNNPDGR 144 (350)
T ss_dssp HHHHTT-TCEEEEEESCCHHHHHHHHHTT------------CEEEEEETTSCGGGSCC-----TTCSEEEEESSCTTTCC
T ss_pred HHHHHC-CCEEEEeCCCcHHHHHHHHHcC------------CeEEEEecCCccccCcc-----CCCCEEEEeCCCCCcCC
Confidence 544444 9999999999999999999998 58999998 65444433 67899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~ 309 (441)
++|.+++++|+++|+++ +||+||+|.++.+++.+. ...++ ..+++++++||||.+|++|+|+||+++++++
T Consensus 145 ~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~-~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~----- 215 (350)
T 3fkd_A 145 LLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIR-PADIK-GRKNLVMVYSFSHAYGIPGLRIGYIVANKDF----- 215 (350)
T ss_dssp CCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCC-GGGGT-TCSSEEEEEESHHHHSCGGGCCEEEECCHHH-----
T ss_pred CCCHHHHHHHHHhCCCC--EEEEECchhhhccCcchh-hHHhh-cCCCEEEEecCchhccCcchheEeEEeCHHH-----
Confidence 99999999998888765 999999999887765332 23333 3577899999999999999999999998776
Q ss_pred chhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcCCC
Q 013521 310 YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGS 388 (441)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 388 (441)
.+.+..... ..+++.+.|.++.+++++.. .+.++.++.. ++++.+.+.|+++ ++.+.+ ..++|+|++++..
T Consensus 216 ---~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~ 287 (350)
T 3fkd_A 216 ---MKRVAAFST--PWAVNALAIEAAKFILIHPA-QFTLPIRKWQ-RNTVDFITALNRLDGVEVHP-SGTTFFLLRLKKG 287 (350)
T ss_dssp ---HHHHHTTCC--TTCSCHHHHHHHHHHHHCTT-TTCCCHHHHH-HHHHHHHHHHHHSTTEEECC-CSSSEEEEEESSS
T ss_pred ---HHHHHHhCC--CCCCCHHHHHHHHHHHhCHH-HHHHHHHHHH-HHHHHHHHHHhcCCCcEECC-CCCcEEEEECCCC
Confidence 355554332 34588999999999887543 1223334444 8889999999988 888765 5788999999854
Q ss_pred ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 389 SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 389 ~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+..++.+.|++++||.+.||+.|+..++++|||++. ++++++++++.|+++
T Consensus 288 ~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~ 338 (350)
T 3fkd_A 288 TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETF 338 (350)
T ss_dssp CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHH
Confidence 677888888875799999999998777899999986 556666666666553
No 63
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=100.00 E-value=3.2e-43 Score=344.87 Aligned_cols=338 Identities=17% Similarity=0.174 Sum_probs=263.8
Q ss_pred CCCCeEEeCCC---CCCCCC--cHHHHHHHHH-HHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCC--cEE
Q 013521 70 PDARLIRLGIG---DTTQPI--PDIITSAMAE-HAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGD--EIF 139 (441)
Q Consensus 70 ~~~~~i~l~~g---~~~~~~--~~~~~~al~~-~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~--~I~ 139 (441)
..+++++|+.| +++.++ ++.+.+++.+ .+.. ....+|++..|..++|+++++++.+..+ ++++ +|+
T Consensus 24 ~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~ 99 (397)
T 3fsl_A 24 PRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP----HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATI 99 (397)
T ss_dssp CCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSC----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCc----cccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEE
Confidence 44679999999 555544 4899999998 8764 3556898888999999999999964222 3688 999
Q ss_pred EcCCcHHHHHHH---HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----
Q 013521 140 ISDGAQSDISRL---QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST----- 211 (441)
Q Consensus 140 ~t~G~~~al~~l---~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~----- 211 (441)
+|+|+++++.++ ..++++||+|+++.|+|+++...++..| .+++.++..++.++..|++.
T Consensus 100 ~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l 167 (397)
T 3fsl_A 100 QTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAG------------FEVSTYPWYDEATNGVRFNDLLATL 167 (397)
T ss_dssp EESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTT------------CCEEEECCEETTTTEECHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcC------------CceEEEeeeeccCCcCcHHHHHHHH
Confidence 999999999874 4567999999999999999999999988 58888888432333333221
Q ss_pred ---CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCcccccCCCcceeEEEecCCc
Q 013521 212 ---TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIYEIPGAREVAIEISSFSK 286 (441)
Q Consensus 212 ---~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~~~~~~~~~~i~i~S~SK 286 (441)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. ...++..+.+..+++++++||||
T Consensus 168 ~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 247 (397)
T 3fsl_A 168 KTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSK 247 (397)
T ss_dssp TTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred HhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccc
Confidence 1567888888999999999999999999999999999999999999988763 23445444334678999999999
Q ss_pred ccCCccceeEEEEeec---cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHH
Q 013521 287 FAGFTGVRLGWTVVPE---ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVIDYYKENA 358 (441)
Q Consensus 287 ~~~~~G~r~G~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~ 358 (441)
.+|++|+|+||++++. +.+. +....+.......+.+++.++|.++.+++.+.. .++++++++++++++
T Consensus 248 ~~~~~G~riG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 323 (397)
T 3fsl_A 248 IFSLYGERVGGLSVMCEDAEAAG----RVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMR 323 (397)
T ss_dssp TTTCGGGCCEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcCCCeeEEEEecCCHHHHH----HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998642 2210 001112222233455568889998888887543 356889999999999
Q ss_pred HHHHHHHHhC----CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHH
Q 013521 359 KIIVDAFQSL----GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEA 433 (441)
Q Consensus 359 ~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~ 433 (441)
+.+.+.|+++ |+.+..+.+|+|+|++++ .+.+..+++++||.+.||. ||+++. ++++++++
T Consensus 324 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~v~~g~----------Ris~~~~~~~~i~~~ 389 (397)
T 3fsl_A 324 QELVKVLSTEMPERNFDYLLNQRGMFSYTGLS----AAQVDRLREEFGVYLIASG----------RMCVAGLNTANVQRV 389 (397)
T ss_dssp HHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC----HHHHHHHHHTTCEECCTTC----------EEEGGGCCTTTHHHH
T ss_pred HHHHHHHHhcCCCCCceeecCCceEEEecCCC----HHHHHHHHHhCCEEECCCC----------eEEEEecCHhhHHHH
Confidence 9999999987 677777778999998874 3456777778899999873 999866 77889999
Q ss_pred HHHHHhhC
Q 013521 434 CRRLKNFL 441 (441)
Q Consensus 434 l~~l~~~l 441 (441)
+++|++++
T Consensus 390 ~~~l~~~l 397 (397)
T 3fsl_A 390 AKAFAAVM 397 (397)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhhC
Confidence 99999875
No 64
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=7.2e-43 Score=338.79 Aligned_cols=327 Identities=18% Similarity=0.284 Sum_probs=269.9
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQSDISR 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~al~~ 150 (441)
+++|+|+.|++++++|+.+.+++.+.+.. ....+|++ .+..++|+++|+++ ++ ++++|++|+|+++++.+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~-~~~~~l~~~la~~~----g~~~~~~i~~~~g~t~a~~~ 100 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGE----VALNRYPV-PSSEALRAKLKEVM----QVPAGMEVLLGNGSDEIISM 100 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHH----HHTTCSCC-CCHHHHHHHHHHHH----TCCTTCEEEEEEHHHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhh----hhhhcCCC-CcHHHHHHHHHHHh----CCCCcceEEEcCCHHHHHHH
Confidence 56899999999999999999999998874 23456754 58899999999997 66 78899999999999998
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CC-CccEEEEcCCCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TS-RTDIIFFCSPNN 225 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~-~~~~v~i~~p~N 225 (441)
+..++++||+|+++.|+|+++...++..| .+++.++.+++..++++ +++ .+ ++++|++++|||
T Consensus 101 ~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~n 168 (367)
T 3euc_A 101 LALAAARPGAKVMAPVPGFVMYAMSAQFAG------------LEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNN 168 (367)
T ss_dssp HHHHTCCTTCEEEEEESCSCCSCHHHHTTT------------CEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCT
T ss_pred HHHHHcCCCCEEEEcCCCHHHHHHHHHHcC------------CeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCC
Confidence 57778999999999999999999988888 58899998763332221 111 23 799999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHc--CcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 226 PTGHAATWQQLKKLVEFAKAN--GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~--~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
|||.++|.+++++|+++|++| |+++|+||+|.++...+ ..+ .+. ..++++++.||||. +++|+|+||++++++
T Consensus 169 ptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~--~~~-~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~ 243 (367)
T 3euc_A 169 PTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES-WMS--RLT-DFGNLLVMRTVSKL-GLAGIRLGYVAGDPQ 243 (367)
T ss_dssp TTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC-SGG--GGG-TCTTEEEEEECCCT-TSCSCCEEEEEECHH
T ss_pred CCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc-hHH--HHh-hCCCEEEEecchhh-cccccCceeeeeCHH
Confidence 999999999999999999999 99999999999876433 222 222 34678999999999 889999999999877
Q ss_pred ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEE
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVW 382 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 382 (441)
+ .+.+..... ..+.+.+.|.++.+++++ .+++++.+++++++++.+.+.|+++ |+.+.+ .+++|+|
T Consensus 244 ~--------~~~~~~~~~--~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~~~~~ 310 (367)
T 3euc_A 244 W--------LEQLDKVRP--PYNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFP-SAANFLL 310 (367)
T ss_dssp H--------HHHHGGGCC--SSCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECC-CSSSEEE
T ss_pred H--------HHHHHHhCC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECC-CCCeEEE
Confidence 6 344443322 345889999999999985 5678999999999999999999998 888654 6889999
Q ss_pred EEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 383 VQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 383 ~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
++++ +..++.+.+ +++||.+.||..|+...++++||++. +++++++++++|++++
T Consensus 311 ~~~~--~~~~l~~~l-~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 311 ARVP--DAAQTFDRL-LARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASL 365 (367)
T ss_dssp EECS--CHHHHHHHH-HTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHT
T ss_pred EECC--CHHHHHHHH-HHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHh
Confidence 9997 566676665 56699999999887767899999976 8899999999999874
No 65
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=100.00 E-value=6e-43 Score=344.85 Aligned_cols=331 Identities=19% Similarity=0.270 Sum_probs=257.4
Q ss_pred CCCCeEEeCCCCC-----CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC-CCCCcEEEcCC
Q 013521 70 PDARLIRLGIGDT-----TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG-IEGDEIFISDG 143 (441)
Q Consensus 70 ~~~~~i~l~~g~~-----~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~-~~~~~I~~t~G 143 (441)
++.++|+|+.|++ ++++++.+.+++.+... ....+|++..|..++|+++++|+.+..+ .++++|++|+|
T Consensus 35 g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-----~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g 109 (413)
T 3t18_A 35 GREAVINAALGTLLDDKGKIIALPSVYDRLDEMDR-----SHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPG 109 (413)
T ss_dssp CGGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCH-----HHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESH
T ss_pred cccceEeccccCccCCCCCcCChHHHHHHHHhcCc-----ccccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCc
Confidence 3457999999997 67788888888766332 2345798888999999999999865322 23449999999
Q ss_pred cHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC----
Q 013521 144 AQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS---- 213 (441)
Q Consensus 144 ~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~---- 213 (441)
+++++.+ +..++++||+|++++|+|+++...+...| .+++.+++++++ +..+++. ..
T Consensus 110 ~~~al~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~ 176 (413)
T 3t18_A 110 GTGAIRSAIFSYLDEGDPLICHDYYWAPYRKICEEFG------------RNFKTFEFFTDD-FAFNIDVYKEAIDEGIRD 176 (413)
T ss_dssp HHHHHHHHHHHHCCSSCEEEEESSCCTHHHHHHHHHT------------CEEEEECCBCTT-SSBCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCCEEEECCCCcccHHHHHHHhC------------CeEEEeeccCCC-CCcCHHHHHHHHHHHhhc
Confidence 9999998 67788999999999999999999999999 588999985443 3333322 11
Q ss_pred Ccc-EEEEcCC-CCccccCCCHHHHHHHHHHHH------HcCcEEEEcccccccccCCC-CCcccc-cCCCcce--eEEE
Q 013521 214 RTD-IIFFCSP-NNPTGHAATWQQLKKLVEFAK------ANGSIIVYDSAYAAYITDPS-PRSIYE-IPGAREV--AIEI 281 (441)
Q Consensus 214 ~~~-~v~i~~p-~NPtG~~~~~~~~~~i~~~a~------~~~~~ii~De~~~~~~~~~~-~~~~~~-~~~~~~~--~i~i 281 (441)
+++ ++++++| |||||.++|.+++++|+++|+ +||++||+||+|.+|.+++. ..++.. .++.+++ ++++
T Consensus 177 ~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 256 (413)
T 3t18_A 177 SDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVA 256 (413)
T ss_dssp CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEE
T ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEE
Confidence 566 7778899 999999999999999999999 89999999999999988754 234332 3333344 5899
Q ss_pred ecCCcccCCccceeEEEEe---eccccccCCchhHHHHHHHHh----hhcCCCcHHHHHHHHHhcCCCc---H-HHHHHH
Q 013521 282 SSFSKFAGFTGVRLGWTVV---PEELRYSNGYPVIKDFNRIVC----TCFNGASNIVQAGGLACLSPDG---F-QALRTV 350 (441)
Q Consensus 282 ~S~SK~~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~---~-~~~~~~ 350 (441)
+||||.+|++|+|+||+++ ++++ ++.+..... ..+..++.++|.++.+++++.. + ++++++
T Consensus 257 ~S~sK~~~~~G~riG~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 328 (413)
T 3t18_A 257 FSMSKSHTAYGLRSGAAVGISSSKEI--------IEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDL 328 (413)
T ss_dssp EEHHHHTTCGGGCCEEEEEEESCHHH--------HHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred EecCccCCCcCcCcEEEEEecCCHHH--------HHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 9999999999999999998 6666 344544332 2234578899999988887543 3 466788
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHH
Q 013521 351 IDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREY 429 (441)
Q Consensus 351 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~ 429 (441)
++.++++++.+.+.|+++|+++.++.+++|+|+++. +..++.+.+ +++||.+.|| ++++||+++. ++++
T Consensus 329 ~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~l-~~~gv~v~~g-------~~~iRis~~~~~~~~ 398 (413)
T 3t18_A 329 RNMLKSRADVFVTAAKENKLTMIPYFGGFFTFIPTD--KAFDIVKDL-EKENIFTIPS-------AKGIRVAICGVGEEK 398 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCBCCCSSSCEEEECS--CHHHHHHHH-HHTTEECEEC-------SSEEEECTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCCceEEEEeCCC--CHHHHHHHH-HhCCEEEecC-------CCceEEEEeeCCHHH
Confidence 899999999999999999998888888999999874 566777665 5669999997 4689999864 5444
Q ss_pred HHHHHHHHHh
Q 013521 430 ISEACRRLKN 439 (441)
Q Consensus 430 ~~~~l~~l~~ 439 (441)
+ +++|.+
T Consensus 399 ~---l~~l~~ 405 (413)
T 3t18_A 399 I---PKLVQR 405 (413)
T ss_dssp H---HHHHHH
T ss_pred H---HHHHHH
Confidence 4 444444
No 66
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=100.00 E-value=9.5e-44 Score=351.69 Aligned_cols=339 Identities=15% Similarity=0.228 Sum_probs=269.8
Q ss_pred CeEEeCCCCCC---CCCcHHHHHHHH--HHHhhccCCCCCCCC-CCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 73 RLIRLGIGDTT---QPIPDIITSAMA--EHAFALSTVKGYKGY-GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~---~~~~~~~~~al~--~~~~~~~~~~~~~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
..|+|+.|.|+ ++.|+.+.+++. +.+.. .....+| ++..|..+||+++|+++ ++++++|++|+|+++
T Consensus 26 ~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~---~~~~~~Yp~~~~g~~~lr~~ia~~~----~~~~~~i~~t~G~~~ 98 (423)
T 3ez1_A 26 LNLNMQRGQPADADFDLSNGLLTVLGAEDVRMD---GLDLRNYPGGVAGLPSARALFAGYL----DVKAENVLVWNNSSL 98 (423)
T ss_dssp CCEESCCCCCCHHHHHTTGGGGGSCCGGGCEET---TEETTSSCSCTTCCHHHHHHHHHHT----TSCGGGEEECSSCHH
T ss_pred ceEecCCCCCChHhCCCcHHHHHHHhhhHHhhc---chhhhCCCCCCCChHHHHHHHHHHh----CCChhhEEEeCCcHH
Confidence 57999999998 777778887775 43331 1334689 88889999999999997 788999999999999
Q ss_pred HHH--H-HHHhcC--C---------CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC
Q 013521 147 DIS--R-LQMLLG--S---------NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST 211 (441)
Q Consensus 147 al~--~-l~~l~~--~---------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~ 211 (441)
++. + +..+++ + ||+|+++.|+|+++...+...| .+++.++.+.+ +++++ +++
T Consensus 99 al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~v~~~~~-g~d~~~l~~ 165 (423)
T 3ez1_A 99 ELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLG------------FELLTVDMQSD-GPDVDAVER 165 (423)
T ss_dssp HHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHT------------CEEEEEEEETT-EECHHHHHH
T ss_pred HHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcC------------CEEEeccCCCC-CCCHHHHHH
Confidence 996 5 566677 7 5999999999999999999999 58889998764 33322 221
Q ss_pred ----CCCccEEEEc-CCCCccccCCCHHHHHHHHHHH-HHcCcEEEEcccccccccCC----CCCccccc---CCCccee
Q 013521 212 ----TSRTDIIFFC-SPNNPTGHAATWQQLKKLVEFA-KANGSIIVYDSAYAAYITDP----SPRSIYEI---PGAREVA 278 (441)
Q Consensus 212 ----~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~a-~~~~~~ii~De~~~~~~~~~----~~~~~~~~---~~~~~~~ 278 (441)
.+++++|+++ +||||||.++|.+++++|+++| ++||++||+||+|..+.+.+ .+.++..+ .+.++++
T Consensus 166 ~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (423)
T 3ez1_A 166 LAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRA 245 (423)
T ss_dssp HHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSE
T ss_pred HHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeE
Confidence 3688998765 8999999999999999999999 99999999999999655433 12344443 1346789
Q ss_pred EEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC--CcH-HHHHHHHHHHH
Q 013521 279 IEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP--DGF-QALRTVIDYYK 355 (441)
Q Consensus 279 i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~-~~~~~~~~~~~ 355 (441)
++++||||.+ ++|+|+||+++++++ ++.+.........+++.+.|.++.+++.+ ..+ +++++.++.++
T Consensus 246 i~~~S~sK~~-~~G~r~G~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 316 (423)
T 3ez1_A 246 FVFASTSKIT-FAGAGLGFVASSEDN--------IRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIA 316 (423)
T ss_dssp EEEEESTTTS-CSSSSCEEEEECHHH--------HHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred EEEeCchhhc-cCCcceEEEEeCHHH--------HHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999994 699999999999887 46677666666677899999999998885 333 67888899999
Q ss_pred HHHHHHHHHHHh----CC--CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeC-CCCcCC---CCCCeEEEEeec
Q 013521 356 ENAKIIVDAFQS----LG--LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIP-GSGFGP---GGNEHIRVSAFG 425 (441)
Q Consensus 356 ~~~~~l~~~L~~----~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~---~~~~~iRls~~~ 425 (441)
++++.+.+.|.+ .+ +.+..+.+|+|+|++++..+...+ ..+++++||.+.| |..|.. .++++|||+++.
T Consensus 317 ~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~-~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~ 395 (423)
T 3ez1_A 317 PKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVADRV-VKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTR 395 (423)
T ss_dssp HHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHHHH-HHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSS
T ss_pred HHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHHHH-HHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCC
Confidence 998888887765 34 677777889999999985444444 4555667999999 777753 357899999965
Q ss_pred -CHHHHHHHHHHHHhhC
Q 013521 426 -HREYISEACRRLKNFL 441 (441)
Q Consensus 426 -~~~~~~~~l~~l~~~l 441 (441)
+++++++++++|++++
T Consensus 396 ~~~~~i~~~~~~l~~~l 412 (423)
T 3ez1_A 396 PPVEEVRTAMQVVAACI 412 (423)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 8999999999998753
No 67
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=100.00 E-value=1.2e-43 Score=359.88 Aligned_cols=342 Identities=18% Similarity=0.231 Sum_probs=268.4
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC-CCcCcHHHHHHHHHHHhhh----CCCC-CCcEEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG-AEQGNMALRTAIADKFYKD----MGIE-GDEIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~----~~~~-~~~I~~t~G~~~ 146 (441)
++++|+.|.++.+ |+.+++++.+.+.. .+|+ +..|..++|+++++++.+. ..++ +++|++|+|+++
T Consensus 104 ~~i~l~~g~~~~~-~~~~v~a~~~~~~~-------~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~ 175 (533)
T 3f6t_A 104 DAVNYCHTELGLN-RDKVVAEWVNGAVA-------NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTA 175 (533)
T ss_dssp HHHHHHHHTTCCC-HHHHHHHHHHHHHT-------CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHH
T ss_pred hheeccCCCCCcC-CcHHHHHHHHHHHh-------CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHH
Confidence 4789999998886 56666666666643 1354 6789999999999999543 2333 479999999999
Q ss_pred HHHHH-HH-----hcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC--CCCccCCCCC-----CC
Q 013521 147 DISRL-QM-----LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP--ENNFFPDLST-----TS 213 (441)
Q Consensus 147 al~~l-~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~~~-----~~ 213 (441)
++.++ .. ++++||.|+++.|+|+++...+...| .+++.++++. +.++..+++. .+
T Consensus 176 al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~~~d~~~l~~~l~~ 243 (533)
T 3f6t_A 176 AIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKD------------YELVEVDLHSYEKNDWEIEPNEIEKLKDP 243 (533)
T ss_dssp HHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGG------------SEEEEECCCEETTTTSEECHHHHHHHSCT
T ss_pred HHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcC------------CeEEEEEecCCcccCCCCCHHHHHHHhCC
Confidence 99984 44 68999999999999999999888888 5788888764 3344444322 36
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHH-HcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAK-ANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~-~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
++++|++++||||||.++|.+++++|+++|+ +||++||+||+|+++.++ +.++... .++++++++||||.+|++|
T Consensus 244 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~--~~~~~~~--~~~~~i~~~S~SK~~g~~G 319 (533)
T 3f6t_A 244 SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN--FKSIYSV--VPYNTMLVYSYSKLFGCTG 319 (533)
T ss_dssp TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT--CCCHHHH--SGGGEEEEEESHHHHTCGG
T ss_pred CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC--ccCHhhc--CCCCEEEEecCcccCCCcc
Confidence 8999999999999999999999999999999 589999999999988764 3455554 3578999999999999999
Q ss_pred ceeEEEEeecc-----ccccCC--------------------ch----hHHHHHHHHhhhcCCCcHHHHHH----HHHhc
Q 013521 293 VRLGWTVVPEE-----LRYSNG--------------------YP----VIKDFNRIVCTCFNGASNIVQAG----GLACL 339 (441)
Q Consensus 293 ~r~G~l~~~~~-----~~~~~~--------------------~~----~~~~~~~~~~~~~~~~~~~~~~a----~~~~l 339 (441)
+|+||++++++ ++..-. .+ +.+.+.........+++.+.|.+ +.+.+
T Consensus 320 ~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L 399 (533)
T 3f6t_A 320 WRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHL 399 (533)
T ss_dssp GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHH
Confidence 99999999987 321000 00 01112223344455678888887 45666
Q ss_pred C-----CCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC-----------------CChHHHHHHH
Q 013521 340 S-----PDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG-----------------SSSWDVFAEI 397 (441)
Q Consensus 340 ~-----~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l 397 (441)
. +....+++++++.++++++.+.+.|. .++.+..+.+++|+|++++. .++.+++..+
T Consensus 400 ~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 478 (533)
T 3f6t_A 400 LTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKL 478 (533)
T ss_dssp TTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHH
Confidence 5 23447889999999999999999998 78887778899999999863 3566888888
Q ss_pred HHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 398 LEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 398 l~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
++++||.+.||+.|+. +++++|||++. +++++++++++|+++
T Consensus 479 l~~~GV~v~pg~~f~~-~~~~iRls~a~~~~e~i~~~i~~L~~~ 521 (533)
T 3f6t_A 479 AEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQVLEL 521 (533)
T ss_dssp HHHTTSSSCTTEEECS-STTEEEEESSSSCHHHHHHHHHHHHHH
T ss_pred HHhCCEEEeCCcccCC-CCCEEEEEEeeCCHHHHHHHHHHHHHH
Confidence 9888999999999976 46799999974 899999999999876
No 68
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=2.8e-46 Score=366.13 Aligned_cols=341 Identities=19% Similarity=0.296 Sum_probs=275.2
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEEcCCcHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFISDGAQSDISR 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~t~G~~~al~~ 150 (441)
++++|+.|++++++|+.+.+++.+.+.. ...+|++. ..++|+++++|+.+.++ +++++|++|+|+++++.+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~ 104 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQ-----LVYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISI 104 (392)
Confidence 7899999999998999999999988752 34567554 88999999999976334 788999999999999997
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCC-CccCCC---CC--C-CCccEEEEcC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPDL---ST--T-SRTDIIFFCS 222 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~---~~--~-~~~~~v~i~~ 222 (441)
+..++++||+|+++.|+|+++...+...| .+++.++.++++ ++..++ ++ . .+++++++++
T Consensus 105 ~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~ 172 (392)
T 3b1d_A 105 AIQAFTKEGEAVLINSPVYPPFARSVRLNN------------RKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCN 172 (392)
Confidence 56678999999999999999998888887 477777775332 233332 22 1 5788999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC-CCcccccCC-CcceeEEEecCCcccCCccceeEEEEe
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS-PRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..++. ..+++++++||||.+|++|+|+||+++
T Consensus 173 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 252 (392)
T 3b1d_A 173 PHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAII 252 (392)
Confidence 999999999999999999999999999999999999887643 345555532 156789999999999999999999999
Q ss_pred ecc-ccccCCchhHHHHHHHHhhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCCC
Q 013521 301 PEE-LRYSNGYPVIKDFNRIVCTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-L-GLKVNGGK 376 (441)
Q Consensus 301 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~ 376 (441)
+++ + ++.+....... +.+++.+.|.++.+++++ ..++++++++.++++++.+.+.|++ + ++.+.++.
T Consensus 253 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 323 (392)
T 3b1d_A 253 ENPTL--------CAQFKHQQLVNNHHEVSSLGYIATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQ 323 (392)
Confidence 865 5 34444433332 234688889888888874 3467789999999999999999987 4 78887777
Q ss_pred CceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 377 NAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 377 ~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+++++|++++. .+..++...+++++||.+.||..|+..+++++||++..+++++++++++|++++
T Consensus 324 ~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l 390 (392)
T 3b1d_A 324 GTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCL 390 (392)
Confidence 88889999974 355677777776679999999999866678999999778899999999998764
No 69
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=100.00 E-value=4.3e-42 Score=334.31 Aligned_cols=307 Identities=21% Similarity=0.304 Sum_probs=257.3
Q ss_pred CCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccc
Q 013521 105 KGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGK 183 (441)
Q Consensus 105 ~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 183 (441)
....+|++..|..++|+++|+++. ++++++|++|+|+++++.+ +..++++||+|+++.|+|+++...+...|
T Consensus 54 ~~~~~y~~~~g~~~l~~~la~~~~---~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g---- 126 (375)
T 3op7_A 54 GTKLNYGWIEGSPAFKKSVSQLYT---GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLG---- 126 (375)
T ss_dssp TSCCSSCCTTCCHHHHHHHHTTSS---SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHTT----
T ss_pred cCCcCCCCCCChHHHHHHHHHHhc---cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcC----
Confidence 455679889999999999999862 5788999999999999997 67788999999999999999999999888
Q ss_pred cccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc
Q 013521 184 FLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA 258 (441)
Q Consensus 184 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~ 258 (441)
.+++.++++.++++..|++. .+++++|++++||||||.++|.+++++|+++|++||+++|+||+|..
T Consensus 127 --------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~ 198 (375)
T 3op7_A 127 --------AEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRS 198 (375)
T ss_dssp --------CEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCC
T ss_pred --------CEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence 58888888765565445332 36899999999999999999999999999999999999999999998
Q ss_pred cccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHh
Q 013521 259 YITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLAC 338 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 338 (441)
+.+.+ ..++... .+++++++||||.+|++|+|+||+++++++ .+.+.........+++.+.+.++.++
T Consensus 199 ~~~~~-~~~~~~~---~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (375)
T 3op7_A 199 FSELD-VPSIIEV---YDKGIAVNSLSKTYSLPGIRIGWVAANHQV--------TDILRDYRDYTMICAGVFDDLVAQLA 266 (375)
T ss_dssp CSSSC-CCCHHHH---CTTEEEEEESSSSSSCGGGCCEEEECCHHH--------HHHHTTTGGGTTSCCCHHHHHHHHHH
T ss_pred ccccC-CCchhhh---cCCEEEEeEChhhcCCcccceEEEEeCHHH--------HHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 87662 2333333 356799999999999999999999998777 45666555555566788888888888
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCC
Q 013521 339 LSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGN 416 (441)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 416 (441)
+.. ...++++.++.++++++.+.+.|++. ++.+..+.+++++|+.++ +.+..+++..+++++||.+.||+.|+. +
T Consensus 267 l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~--~ 343 (375)
T 3op7_A 267 LAH-YQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFER--D 343 (375)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTC--T
T ss_pred Hhc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCC--C
Confidence 863 33577888999999999999999987 788877778888999887 446678888888778999999998875 6
Q ss_pred CeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 417 EHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 417 ~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+++|++++.+.+++++++++|++++
T Consensus 344 ~~iRi~~~~~~~~i~~~l~~l~~~l 368 (375)
T 3op7_A 344 GYVRLGFACEQETLIKGLEKLSQFL 368 (375)
T ss_dssp TEEEECCCSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHH
Confidence 8999999888899999999998763
No 70
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=100.00 E-value=1.3e-42 Score=342.03 Aligned_cols=338 Identities=14% Similarity=0.133 Sum_probs=260.7
Q ss_pred CCCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEE--EcCCc
Q 013521 70 PDARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIF--ISDGA 144 (441)
Q Consensus 70 ~~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~--~t~G~ 144 (441)
..+++|+|++|+| +++.++.+.+++.++. .....+|++..|..++|+++++|+..... +++++|. .|.|+
T Consensus 39 ~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~-----~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g 113 (409)
T 4eu1_A 39 PAKRKVNLSIGVYRDDADQPFVLECVKQAT-----LGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGG 113 (409)
T ss_dssp CCSSCEECCCSSCCCTTSCCCCCHHHHTCC-----CCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHH
T ss_pred CCcCceeeeeeEEECCCCCEeecHHHHhcC-----ccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccc
Confidence 3467999999997 8877777888887762 15567898889999999999999842111 2278884 59999
Q ss_pred HHHHHHH----HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC--------C
Q 013521 145 QSDISRL----QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--------T 212 (441)
Q Consensus 145 ~~al~~l----~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--------~ 212 (441)
++++.++ ..++++||.|++++|+|+++...++..| .+++.+++++++++..|++. .
T Consensus 114 ~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 181 (409)
T 4eu1_A 114 TGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAG------------MELTPYSYYDPATKGLNLAGMLECLDKAP 181 (409)
T ss_dssp HHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTT------------CEEEEECCEETTTTEECHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcC------------CeEEEEEeecCcCCcCcHHHHHHHHHhCC
Confidence 9988753 3456899999999999999999999998 58888888543344444332 1
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC---CCcccccCCCcceeEEEecCCcccC
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS---PRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~---~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
.+++++++++||||||.++|.+++++|+++|++||+++|+||+|+++.+++. +.++..+.+..+++++++||||.+|
T Consensus 182 ~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 261 (409)
T 4eu1_A 182 EGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG 261 (409)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS
T ss_pred CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc
Confidence 3456666789999999999999999999999999999999999999887651 2344444234567899999999999
Q ss_pred CccceeEEE--EeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWT--VVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVIDYYKENAKIIV 362 (441)
Q Consensus 290 ~~G~r~G~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~ 362 (441)
++|+|+||+ +++++.+. ..+.+.+.......+.+++.+.|.++.+++.+.. .++++++++.++++++.+.
T Consensus 262 ~~G~riG~~~~v~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (409)
T 4eu1_A 262 LYGHRCGALHISTASAEEA---KRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLV 338 (409)
T ss_dssp CGGGCCEEEEEECSSHHHH---HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCceEEEEEeCCHHHH---HHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 55443200 0013455555555566678999999988887543 2457889999999999999
Q ss_pred HHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHH
Q 013521 363 DAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRL 437 (441)
Q Consensus 363 ~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l 437 (441)
+.|+++| +.+..+.+++|+|+.++ .+++..+++++||.+.|| .||+++. +++++++++++|
T Consensus 339 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~gv~v~p~----------~Ri~~~~~~~~~i~~~~~~l 404 (409)
T 4eu1_A 339 SELKACGSVHDWSHIERQVGMMAYTGLT----REQVELLRSEYHIYMTLN----------GRAAVSGLNSTNVEYVSQAI 404 (409)
T ss_dssp HHHHHTTCCSCCHHHHHSCSSEEECCCC----HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHHH
T ss_pred HHHHhcCCCCCcceecCCceEEEEeCCC----HHHHHHHHHcCCEEEcCC----------CEEEEEecCHhhHHHHHHHH
Confidence 9999986 77777788999997664 466788888889999985 3888754 777899999999
Q ss_pred HhhC
Q 013521 438 KNFL 441 (441)
Q Consensus 438 ~~~l 441 (441)
++++
T Consensus 405 ~~~l 408 (409)
T 4eu1_A 405 HNVT 408 (409)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8763
No 71
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=8.9e-41 Score=320.09 Aligned_cols=319 Identities=22% Similarity=0.324 Sum_probs=249.7
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 71 DARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
..++|+|+.+++++++++.+.+++.+.+.. ..+| +..|..++|+++|+++ ++++++|++|+|+++++.+
T Consensus 15 ~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~------~~~y-~~~~~~~lr~~la~~~----~~~~~~i~~t~G~~~~l~~ 83 (337)
T 3p1t_A 15 AAQAVCLAFNENPEAVEPRVQAAIAAAAAR------INRY-PFDAEPRVMRKLAEHF----SCPEDNLMLVRGIDECFDR 83 (337)
T ss_dssp CCCCEECSSCCCCSCCCHHHHHHHHHHGGG------TTSC-CTTHHHHHHHHHHHHH----TSCGGGEEEESHHHHHHHH
T ss_pred CCCceEeeCCCCCCCCCHHHHHHHHHhhhh------hccC-CCCchHHHHHHHHHHh----CcCHHHEEEeCCHHHHHHH
Confidence 356899999999999999999999987653 3467 4679999999999997 7888999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCCCCCccEEEEcCCCCcccc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LSTTSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~~~~~~~v~i~~p~NPtG~ 229 (441)
+...+ +||+|+++.|+|+++...++..| .+++.++.+++.+++++ +++..+++++++++||||||.
T Consensus 84 ~~~~~-~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~v~i~~p~nptG~ 150 (337)
T 3p1t_A 84 ISAEF-SSMRFVTAWPGFDGYRARIAVSG------------LRHFEIGLTDDLLLDPNDLAQVSRDDCVVLANPSNPTGQ 150 (337)
T ss_dssp HHHHS-TTSEEEEESSSCSHHHHHHTTSC------------CEEEEECBCTTSSBCHHHHTTCCTTEEEEEESSCTTTCC
T ss_pred HHHhc-CCCeEEEeCCCcHHHHHHHHHcC------------CEEEEecCCCCCCCCHHHHHhhcCCCEEEEeCCCCCCCC
Confidence 65555 99999999999999999888888 58889988754333322 333467899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG 309 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~ 309 (441)
++|.+++.+ +|+++++ +|+||+|++|...... .. ...+++++++||||.+|++|+|+||++++++++
T Consensus 151 ~~~~~~l~~---l~~~~~~-~ivDea~~~~~~~~~~-~~----~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~---- 217 (337)
T 3p1t_A 151 ALSAGELDQ---LRQRAGK-LLIDETYVDYSSFRAR-GL----AYGENELVFRSFSKSYGLAGLRLGALFGPSELI---- 217 (337)
T ss_dssp CCCHHHHHH---HHHHCSE-EEEECTTGGGSSCSSS-CC----CCBTTEEEEEESSSTTCCTTTCCEEEECCHHHH----
T ss_pred CCCHHHHHH---HHHhCCc-EEEECCChhhcccccc-cc----ccCCCEEEEeeCchhccCcchheEEEEeCHHHH----
Confidence 999665555 5567786 5569999987654321 11 134678999999999999999999999988873
Q ss_pred chhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCC
Q 013521 310 YPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSS 389 (441)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 389 (441)
+.+.... ...+.+.+.|.++.+++++. .++++.++++.++++.+.+.|+++|+.+.+ +.+.|+|+..+.
T Consensus 218 ----~~l~~~~--~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~-- 286 (337)
T 3p1t_A 218 ----AAMKRKQ--WFCNVGTLDLHALEAALDND--RAREAHIAKTLAQRRRVADALRGLGYRVAS-SEANFVLVENAA-- 286 (337)
T ss_dssp ----HHHHTTS--CTTCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHTTCCBCC-CSSSEEEEECTT--
T ss_pred ----HHHHhhc--CCCCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHCcCEECC-CCCeEEEEEcCC--
Confidence 4454332 23457888999888888752 334566677778889999999998888775 467788888763
Q ss_pred hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 390 SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 390 ~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
..++.. +++++||.+.||+.|+. ++++||++. ++++++++++.|++++
T Consensus 287 ~~~~~~-~l~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 287 GERTLR-FLRERGIQVKDAGQFGL--HHHIRISIG-REEDNDRLLAALAEYS 334 (337)
T ss_dssp THHHHH-HHHHTTEECEEGGGGTC--CSEEEEECC-CHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHCCeEEEECccCCC--CCeEEEecC-CHHHHHHHHHHHHHHh
Confidence 344444 45566999999998865 579999986 6888899999888753
No 72
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=100.00 E-value=7e-42 Score=340.52 Aligned_cols=341 Identities=15% Similarity=0.148 Sum_probs=262.0
Q ss_pred CCCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhcc--CCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-----CCcEEE-
Q 013521 70 PDARLIRLGIGDT-TQPIPDIITSAMAEHAFALS--TVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-----GDEIFI- 140 (441)
Q Consensus 70 ~~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~--~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-----~~~I~~- 140 (441)
+.+.+|+|++|.| +...++.+.+++.++..+.. ......+|.+..|..++|+++++++. +.+ +++|++
T Consensus 47 ~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~---g~~~~~~~~~~i~~~ 123 (448)
T 3meb_A 47 TNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMF---GKDSKAAQEGRIASC 123 (448)
T ss_dssp CCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHH---CTTCHHHHTTCEEEE
T ss_pred CCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhc---CCCccccCcCcEEEE
Confidence 3456899999998 76555445555555533221 11455689888999999999999983 444 789999
Q ss_pred -cCCcHHHHHH---HHHhcCCCCEEEEeCCCchhhHhHHH----HhccccccccccCccceeEEeecCCCC-CccCCCCC
Q 013521 141 -SDGAQSDISR---LQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQAGKFLKETGKYRNIVYMNCRPEN-NFFPDLST 211 (441)
Q Consensus 141 -t~G~~~al~~---l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~~ 211 (441)
|+|+++++++ +..++.+||+|++++|+|+++...++ ..| .+++.++..+++ ++..|++.
T Consensus 124 ~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G------------~~v~~~~~~~~~~~~~~d~e~ 191 (448)
T 3meb_A 124 QSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLK------------VPYKEYTYLRKDGELEIDFSN 191 (448)
T ss_dssp EESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTT------------SCCEEECCBCTTSCSSBCHHH
T ss_pred ECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCC------------CeEEEEeccccccCCCcCHHH
Confidence 9999999976 35667999999999999999999998 788 588889884333 34445432
Q ss_pred -------C-CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC---CCcccccCCCcceeEE
Q 013521 212 -------T-SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS---PRSIYEIPGAREVAIE 280 (441)
Q Consensus 212 -------~-~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~---~~~~~~~~~~~~~~i~ 280 (441)
. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++. ..++..+.+..+++++
T Consensus 192 l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (448)
T 3meb_A 192 TKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLV 271 (448)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEE
T ss_pred HHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEE
Confidence 1 3567778899999999999999999999999999999999999999887641 2233333223467899
Q ss_pred EecCCcccCCccceeEEE--Ee--------eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc----H-H
Q 013521 281 ISSFSKFAGFTGVRLGWT--VV--------PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG----F-Q 345 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~-~ 345 (441)
++||||.+|++|+|+||+ ++ +++.. ...+.+.+.......+.+++.+.|.++.+++.+.. + +
T Consensus 272 ~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~ 348 (448)
T 3meb_A 272 AQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKAL---SAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYD 348 (448)
T ss_dssp EEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHH---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred EecccccCCCccccceeeeeeeccccccccCCHHH---HHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHH
Confidence 999999999999999998 77 44310 00014555555556666788999999999998643 1 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC---C------CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCC
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSL---G------LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGN 416 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~---g------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 416 (441)
++++++++++++++.+.+.|+++ + +.+..+.+++|+|+.++ .+++..+++++||.+.||+
T Consensus 349 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~ll~~~gV~v~~G~------- 417 (448)
T 3meb_A 349 NVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT----PEHVDYLKEKWSIYLVKAG------- 417 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC----HHHHHHHHHHHCEEECSGG-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC----HHHHHHHHHhCCEEEeCCC-------
Confidence 57899999999999999999987 3 55556678999998874 4778888888899999985
Q ss_pred CeEEEEeec-CHHHHHHHHHHHHhhC
Q 013521 417 EHIRVSAFG-HREYISEACRRLKNFL 441 (441)
Q Consensus 417 ~~iRls~~~-~~~~~~~~l~~l~~~l 441 (441)
.|||++. +++++++++++|++++
T Consensus 418 --gRis~a~~~~~~i~~~~~~l~~~l 441 (448)
T 3meb_A 418 --GRMSMCGLTESNCDYVAEAIHDAV 441 (448)
T ss_dssp --GEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred --cEEEEecCCHHHHHHHHHHHHHHH
Confidence 2999976 7888999999998763
No 73
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1.3e-41 Score=338.46 Aligned_cols=349 Identities=21% Similarity=0.321 Sum_probs=258.7
Q ss_pred CCeE-EeCCCCCCCCCcHHHHHHHHHHHhhccCC-----------CCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCc
Q 013521 72 ARLI-RLGIGDTTQPIPDIITSAMAEHAFALSTV-----------KGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDE 137 (441)
Q Consensus 72 ~~~i-~l~~g~~~~~~~~~~~~al~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~ 137 (441)
+++| +|+.|.|+.+ +.+.+++.+++.+.... ....+|++..|..++|+++|+|+.+ ++++++++
T Consensus 31 ~~~i~~l~~g~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~ 108 (444)
T 3if2_A 31 DQPVNMLGGGNPAKI--DAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSEN 108 (444)
T ss_dssp SSCCEECSCCCCCCC--HHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG
T ss_pred chhhhccCCCCCCcc--cchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHH
Confidence 5789 9999998763 44444554444433211 1135798889999999999999965 56788999
Q ss_pred EEEcCCcHHHHHH-HHHhcCCCC--------------EEEEe-CCCchhhHhHHHHhccccccccccCccceeEEeecCC
Q 013521 138 IFISDGAQSDISR-LQMLLGSNV--------------TVAVQ-DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP 201 (441)
Q Consensus 138 I~~t~G~~~al~~-l~~l~~~gd--------------~Vlv~-~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~ 201 (441)
|++|+|+++++++ +..++++|| .|+++ +|+|+++...+...+. +...+ ..++.++.+.
T Consensus 109 i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~ 182 (444)
T 3if2_A 109 IALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQH---FAAVL---PHIDEVTHDG 182 (444)
T ss_dssp EEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCC---EEECC---CEEEEEEETT
T ss_pred EEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccch---hhccC---ceEEeccccc
Confidence 9999999999998 567778887 78775 9999998764321110 00000 3677777764
Q ss_pred CCC---ccCC---CCC-----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccc
Q 013521 202 ENN---FFPD---LST-----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE 270 (441)
Q Consensus 202 ~~~---~~~~---~~~-----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~ 270 (441)
+++ +..+ +++ .+++++|++++||||||.++|.+++++|+++|++||++||+||+|+.+..........
T Consensus 183 ~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~- 261 (444)
T 3if2_A 183 EEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAH- 261 (444)
T ss_dssp EEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC-
T ss_pred ccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccccc-
Confidence 211 2223 221 3678999999999999999999999999999999999999999998643221111111
Q ss_pred cCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHH
Q 013521 271 IPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRT 349 (441)
Q Consensus 271 ~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~ 349 (441)
....+++++++||||. +++|+|+||+++++++ .+.+.........+++.+.|.++.+++.+..+ .+.++
T Consensus 262 -~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l--------~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 331 (444)
T 3if2_A 262 -LNWDNNTILCFSLSKI-GLPGMRTGIIVADAKV--------IEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDN 331 (444)
T ss_dssp -CCCCTTEEEEEESTTT-TCGGGCCEEEECCHHH--------HHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHH
T ss_pred -ccCCCCEEEEechhhc-cCCCCceEEEEECHHH--------HHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHH
Confidence 1235778999999997 6799999999998887 45666665555566788999999888886544 44454
Q ss_pred -HHHHHHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCC--------
Q 013521 350 -VIDYYKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPG-------- 414 (441)
Q Consensus 350 -~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~-------- 414 (441)
+++.++++++.+.+.|.+. ++.+..+.+|+|+|++++. .+..++...+. ++||.+.||+.|...
T Consensus 332 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~~~~ 410 (444)
T 3if2_A 332 EIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERLK-AKGTLIVPSEYFFPGVDVSDYQH 410 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHHH-HTTEECEEGGGSCTTCCCTTCSG
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHHH-HCCeEEecchhhcCCCCCccccc
Confidence 7888999999998888763 5677777789999999973 46667777664 569999999998543
Q ss_pred CCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 415 GNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 415 ~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
..++|||+++.+++++++++++|+++
T Consensus 411 ~~~~iRis~~~~~e~i~~~l~~l~~~ 436 (444)
T 3if2_A 411 AHECIRMSIAADEQTLIDGIKVIGEV 436 (444)
T ss_dssp GGSEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHHHH
Confidence 13689999977999999999999875
No 74
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=100.00 E-value=5.6e-41 Score=321.47 Aligned_cols=316 Identities=17% Similarity=0.280 Sum_probs=250.5
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQ 152 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~ 152 (441)
++++|+.|.++++.|+.+.+++.+.+.. ....+|+. .+..++|+++|+++.+. .+++++|++|+|+++++.++.
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~-~~~~~lr~~la~~~~~~-~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNS----DALRIYYD-SPDEELIEKILSYLDTD-FLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCG----GGGGSCCC-SSCHHHHHHHHHHHTCS-SCCGGGEEEESSHHHHHHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhh----hhhhcCCC-CchHHHHHHHHHHcCCC-CCCHHHEEEcCChHHHHHHHH
Confidence 5899999999888899999999987742 23456754 47999999999998322 378899999999999999865
Q ss_pred HhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCC
Q 013521 153 MLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAAT 232 (441)
Q Consensus 153 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~ 232 (441)
..+ ||+|+++ |+|+++...++..| .+++.++.+.+ +..+++..+++++|++++||||||.++|
T Consensus 94 ~~~--gd~Vl~~-p~y~~~~~~~~~~g------------~~~~~v~~~~~--~~~d~~~l~~~~~v~l~~p~nptG~~~~ 156 (335)
T 1uu1_A 94 LMF--DRSVFFP-PTYSCYRIFAKAVG------------AKFLEVPLTKD--LRIPEVNVGEGDVVFIPNPNNPTGHVFE 156 (335)
T ss_dssp HHS--SEEEECS-SSCHHHHHHHHHHT------------CEEEECCCCTT--SCCCCCCCCTTEEEEEESSCTTTCCCCC
T ss_pred HHh--CCcEEEC-CCcHHHHHHHHHcC------------CeEEEeccCCC--CCCCHHHcCCCCEEEEeCCCCCCCCCCC
Confidence 555 8999999 99999999988888 58888888643 3334443367899999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchh
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPV 312 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~ 312 (441)
.+++++|+++| | ++|+||+|.++... ..... ++ ..+++++++||||.+|++|+|+||+++++++
T Consensus 157 ~~~l~~l~~~~---~-~li~De~~~~~~~~-~~~~~--~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~-------- 220 (335)
T 1uu1_A 157 REEIERILKTG---A-FVALDEAYYEFHGE-SYVDF--LK-KYENLAVIRTFSKAFSLAAQRVGYVVASEKF-------- 220 (335)
T ss_dssp HHHHHHHHHTT---C-EEEEECTTHHHHCC-CCGGG--GG-TCSSEEEEEESTTTTTCGGGCCEEEEECHHH--------
T ss_pred HHHHHHHHHhC---C-EEEEECcchhhcch-hHHHH--hh-hCCCEEEEecchhhcCCcccCeEEEEeCHHH--------
Confidence 99888888877 7 89999999987643 11221 22 2467899999999999999999999998776
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChHH
Q 013521 313 IKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWD 392 (441)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (441)
.+.+..... ..+++.+.|.++.+++++ .+++++.+++++++++.+.+.|+++|+.+.+ .+++|+|++++..+..+
T Consensus 221 ~~~l~~~~~--~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~ 295 (335)
T 1uu1_A 221 IDAYNRVRL--PFNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITD-SRGNFVFVFMEKEEKER 295 (335)
T ss_dssp HHHHHHHSC--TTCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CCSSEEEEECCTHHHHH
T ss_pred HHHHHHhcC--CCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCcEEcC-CCCeEEEEECCCCCHHH
Confidence 355554332 246889999999999975 3567889999999999999999888877654 57889999997533456
Q ss_pred HHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhhC
Q 013521 393 VFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNFL 441 (441)
Q Consensus 393 ~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~l 441 (441)
+...+++ +||.+.| .++++||++. +++++++++++|++++
T Consensus 296 ~~~~l~~-~gi~v~~-------~~~~iRis~~-~~~~i~~~~~~l~~~~ 335 (335)
T 1uu1_A 296 LLEHLRT-KNVAVRS-------FREGVRITIG-KREENDMILRELEVFK 335 (335)
T ss_dssp HHHHHHH-HTEEEEE-------ETTEEEEECC-CHHHHHHHHHHHHCC-
T ss_pred HHHHHHH-CCEEEEE-------CCCeEEEEeC-CHHHHHHHHHHHHhhC
Confidence 6677665 5999998 2468999985 4678999999998764
No 75
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=100.00 E-value=5.9e-42 Score=335.75 Aligned_cols=336 Identities=17% Similarity=0.210 Sum_probs=257.8
Q ss_pred CCeEEeCCCCC---CC--CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEE--cC
Q 013521 72 ARLIRLGIGDT---TQ--PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFI--SD 142 (441)
Q Consensus 72 ~~~i~l~~g~~---~~--~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~--t~ 142 (441)
+++|+|+.|.+ +. ++++.+.+++.+.+.. ...++|++..|..++|+++++++.+..+ +++++|++ |+
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~ 101 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN----ETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTP 101 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEES
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCc----ccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecc
Confidence 46899999983 32 5668899999887764 2455798888999999999999854222 46899998 99
Q ss_pred CcHHHHHHH-HHh--cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-------C
Q 013521 143 GAQSDISRL-QML--LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-------T 212 (441)
Q Consensus 143 G~~~al~~l-~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-------~ 212 (441)
|++++++++ ..+ +.+||+|+++.|+|+++...++..| .+++.++.++++++..+++. .
T Consensus 102 g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 169 (396)
T 2q7w_A 102 GGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAG------------LEVREYAYYDAENHTLDFDALINSLNEA 169 (396)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTT------------CEEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcC------------CceEEEecccCCCCCcCHHHHHHHHHhC
Confidence 999999974 322 4799999999999999999999888 58888888532233333221 1
Q ss_pred -CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCcccccCCCcceeEEEecCCcccC
Q 013521 213 -SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 -~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
++++++++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++ ...++..+....+++++++||||.+|
T Consensus 170 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 249 (396)
T 2q7w_A 170 QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFG 249 (396)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccc
Confidence 246778889999999999999999999999999999999999999987753 23344444323467899999999999
Q ss_pred CccceeEEEEe---eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC----c-HHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWTVV---PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD----G-FQALRTVIDYYKENAKII 361 (441)
Q Consensus 290 ~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~-~~~~~~~~~~~~~~~~~l 361 (441)
++|+|+||+++ +++.+. .+.+.+.......+.+++.+.|.++.+++++. . .++++++++.++++++.+
T Consensus 250 ~~G~riG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 325 (396)
T 2q7w_A 250 LYNERVGACTLVAADSETVD----RAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLF 325 (396)
T ss_dssp CGGGCCEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHH
T ss_pred ccccccceEEEEcCCHHHHH----HHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 332210 01333443334455556899999999999854 1 257888999999999999
Q ss_pred HHHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHH
Q 013521 362 VDAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRR 436 (441)
Q Consensus 362 ~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~ 436 (441)
.+.|++++ +++..+.+|+|+|++++ .+.+..+++++||.+.|| +||++.. +++++++++++
T Consensus 326 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gv~v~~~----------~Ris~~~~~~e~i~~~~~~ 391 (396)
T 2q7w_A 326 VNTLQEKGANRDFSFIIKQNGMFSFSGLT----KEQVLRLREEFGVYAVAS----------GRVNVAGMTPDNMAPLCEA 391 (396)
T ss_dssp HHHHHHTTCCSCCTHHHHCCSSEEECCCC----HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHH
T ss_pred HHHHHhcCCCCCcceecCCCceEEEecCC----HHHHHHHHHhcCeeecCC----------ceEEEeecCHHHHHHHHHH
Confidence 99999886 77766778999998774 245677777779999874 6999865 88999999999
Q ss_pred HHhhC
Q 013521 437 LKNFL 441 (441)
Q Consensus 437 l~~~l 441 (441)
|++++
T Consensus 392 l~~~l 396 (396)
T 2q7w_A 392 IVAVL 396 (396)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 99875
No 76
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=100.00 E-value=1.9e-41 Score=333.90 Aligned_cols=339 Identities=17% Similarity=0.149 Sum_probs=264.5
Q ss_pred CCCCeEEeCCCCC-C----CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEE--
Q 013521 70 PDARLIRLGIGDT-T----QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFI-- 140 (441)
Q Consensus 70 ~~~~~i~l~~g~~-~----~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~-- 140 (441)
.++++++|+.|.+ + .++++.+.+++.+.+.. .....+|++..|..++|+++++++.+..+ +++++|++
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~---~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~ 104 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN---SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQ 104 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC---TTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhC---hhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEE
Confidence 3467999999985 2 24568889998887632 13456798888999999999999954222 47899999
Q ss_pred cCCcHHHHHHH---HHhcCCC-----CEEEEeCCCchhhHhHHHHhccccccccccCccce-eEEeecCCCCCccCCCCC
Q 013521 141 SDGAQSDISRL---QMLLGSN-----VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRN-IVYMNCRPENNFFPDLST 211 (441)
Q Consensus 141 t~G~~~al~~l---~~l~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~-v~~v~~~~~~~~~~~~~~ 211 (441)
|+|+++++.++ ..++++| |+|+++.|+|+++...+...| .+ ++.++.+.++++..+++.
T Consensus 105 t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~d~~~ 172 (412)
T 1ajs_A 105 SLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAG------------FKDIRSYRYWDTEKRGLDLQG 172 (412)
T ss_dssp EEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTT------------CSCEEEEECEETTTTEECHHH
T ss_pred CCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcC------------CceeEEEeeecCCCCccCHHH
Confidence 99999999974 3456899 999999999999999999888 57 888887532333334321
Q ss_pred --------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC---CCCcccccCCCcceeEE
Q 013521 212 --------TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP---SPRSIYEIPGAREVAIE 280 (441)
Q Consensus 212 --------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~---~~~~~~~~~~~~~~~i~ 280 (441)
.++++++++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++ .+.++..+...++++++
T Consensus 173 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (412)
T 1ajs_A 173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFC 252 (412)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEE
Confidence 1366788889999999999999999999999999999999999999988764 33345444333577899
Q ss_pred EecCCcccCCccceeEEEEe---eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHH
Q 013521 281 ISSFSKFAGFTGVRLGWTVV---PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVID 352 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~ 352 (441)
+.||||.+|++|+|+||+++ +++.+. .+.+.+.......+.+++.+.|.++.+++++.. .++++++++
T Consensus 253 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1ajs_A 253 AQSFSKNFGLYNERVGNLTVVAKEPDSIL----RVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMAD 328 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred EEecccccCCCCcceEEEEEecCCHHHHH----HHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHH
Confidence 99999999988999999999 665310 012334443444555568899999999997543 247889999
Q ss_pred HHHHHHHHHHHHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CH
Q 013521 353 YYKENAKIIVDAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HR 427 (441)
Q Consensus 353 ~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~ 427 (441)
+++++++.+.+.|++++ +.+..+.+|+|+|++++ .+++..+++++||.+.|+ +||++.. ++
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gv~v~~~----------~Ris~~~~~~ 394 (412)
T 1ajs_A 329 RILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN----PKQVEYLINQKHIYLLPS----------GRINMCGLTT 394 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC----HHHHHHHHHTTCEECCTT----------SEEEGGGCCT
T ss_pred HHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC----HHHHHHHHHhCCEEecCC----------cEEEeeeCCH
Confidence 99999999999999876 77766778999998774 467777787889999873 6999874 88
Q ss_pred HHHHHHHHHHHhhC
Q 013521 428 EYISEACRRLKNFL 441 (441)
Q Consensus 428 ~~~~~~l~~l~~~l 441 (441)
+++++++++|++++
T Consensus 395 ~~i~~~~~~l~~~l 408 (412)
T 1ajs_A 395 KNLDYVATSIHEAV 408 (412)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998753
No 77
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=100.00 E-value=1.6e-41 Score=334.48 Aligned_cols=335 Identities=15% Similarity=0.171 Sum_probs=257.9
Q ss_pred CCCeEEeCCCCC-CC----CCcHHHHHHHHH-HHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC--CCCCcEEE--
Q 013521 71 DARLIRLGIGDT-TQ----PIPDIITSAMAE-HAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG--IEGDEIFI-- 140 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~----~~~~~~~~al~~-~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~I~~-- 140 (441)
+.++|+|+.|.+ +. ++++.+.+++.+ .+.. ....+|++..|..++|+++++++.+..+ +++++|++
T Consensus 28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~----~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~ 103 (412)
T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS----SYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQ 103 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT----TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc----ccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEe
Confidence 467899999986 33 467888999888 7652 3455798888999999999999964333 56899999
Q ss_pred cCCcHHHHHHH---HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeec-CCCCCccCCCCC-----
Q 013521 141 SDGAQSDISRL---QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNC-RPENNFFPDLST----- 211 (441)
Q Consensus 141 t~G~~~al~~l---~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~-~~~~~~~~~~~~----- 211 (441)
|+|+++++.++ ..++++||+|++++|+|+++...++..| .+++.++. +++ ++..+++.
T Consensus 104 t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g------------~~~~~v~~~~~~-~~~~d~~~l~~~l 170 (412)
T 1yaa_A 104 SLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQG------------LKTATYPYWANE-TKSLDLNGFLNAI 170 (412)
T ss_dssp EEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTT------------CCEEEEECEETT-TTEECHHHHHHHH
T ss_pred ccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcC------------ceEEEEeeecCC-CCccCHHHHHHHH
Confidence 99999999874 4556899999999999999999998888 58888887 432 33333321
Q ss_pred --CCCccEEEE-cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC---CCCcccccCCCcc---eeEEEe
Q 013521 212 --TSRTDIIFF-CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP---SPRSIYEIPGARE---VAIEIS 282 (441)
Q Consensus 212 --~~~~~~v~i-~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~---~~~~~~~~~~~~~---~~i~i~ 282 (441)
.+..+++++ ++||||||.++|.+++++|+++|++||+++|+||+|.++.+++ .+.++..+....+ ++++++
T Consensus 171 ~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 250 (412)
T 1yaa_A 171 QKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQ 250 (412)
T ss_dssp HHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEE
T ss_pred HhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEe
Confidence 112344554 8999999999999999999999999999999999999887764 2334433322223 789999
Q ss_pred cCCcccCCccceeEEEE--e-----eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHH
Q 013521 283 SFSKFAGFTGVRLGWTV--V-----PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTV 350 (441)
Q Consensus 283 S~SK~~~~~G~r~G~l~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~ 350 (441)
||||.+|++|+|+||++ + +++.+. .+.+.+.......+.+++.+.|.++.+++++.. .++++++
T Consensus 251 s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 326 (412)
T 1yaa_A 251 SFAKNAGMYGERVGCFHLALTKQAQNKTIKP----AVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTM 326 (412)
T ss_dssp ECTTTSCCGGGCEEEEEEECCSCTTHHHHHH----HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCcCCcceEEEEEecCCCCCHHHHH----HHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999997799999998 7 444100 013455554445556668899999999997543 2578999
Q ss_pred HHHHHHHHHHHHHHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-
Q 013521 351 IDYYKENAKIIVDAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG- 425 (441)
Q Consensus 351 ~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~- 425 (441)
+++++++++.+.+.|++++ +++..+.+|+|+|+.++ . +.+..+++++||.+.| ++||++..
T Consensus 327 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~gi~v~~----------~~Ris~~~~ 392 (412)
T 1yaa_A 327 SSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT---P-QMVKRLEETHAVYLVA----------SGRASIAGL 392 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC---H-HHHHHHHHHHCEECCT----------TSEEEGGGC
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCC---H-HHHHHHHHhCCEEecc----------CcEEEEccC
Confidence 9999999999999999876 77777778899998663 3 3457777777999987 47999865
Q ss_pred CHHHHHHHHHHHHhh
Q 013521 426 HREYISEACRRLKNF 440 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~ 440 (441)
+++++++++++|+++
T Consensus 393 ~~~~i~~~~~~l~~~ 407 (412)
T 1yaa_A 393 NQGNVEYVAKAIDEV 407 (412)
T ss_dssp CTTTHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHH
Confidence 889999999999875
No 78
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=100.00 E-value=6.6e-42 Score=338.10 Aligned_cols=326 Identities=17% Similarity=0.201 Sum_probs=254.9
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCc-C---cHHHHHHHHHHHhh--hCCCCCCcEEEcCCcH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQ-G---NMALRTAIADKFYK--DMGIEGDEIFISDGAQ 145 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~-g---~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~ 145 (441)
..+|+|+.|+|++++|+.+.+++.+++.... ....+|++.. | ..+||++||+|+.+ +..+++++|++|+|++
T Consensus 56 ~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~--~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~ 133 (427)
T 2hox_A 56 GCSADVASGDGLFLEEYWKQHKEASAVLVSP--WHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVT 133 (427)
T ss_dssp TCCEECCSCCCGGGHHHHTTSHHHHCEEECT--TTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHH
T ss_pred CceEEecCcCCCCCCCHHHHHhHHhhhhcCC--cccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHH
Confidence 4689999999998877888888887663211 1223488877 8 99999999999975 2346899999999999
Q ss_pred HHHHH-HHHh--------cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCcc
Q 013521 146 SDISR-LQML--------LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTD 216 (441)
Q Consensus 146 ~al~~-l~~l--------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~ 216 (441)
+++.+ +..+ +++||.|++++|+|+++...++..|. +++....+.+ .+...+ .++++
T Consensus 134 ~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~------------~~~~~~~d~~-~l~~~~--~~~~k 198 (427)
T 2hox_A 134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDK------------KGYVWAGNAA-NYVNVS--NPEQY 198 (427)
T ss_dssp HHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCB------------TTEEEEEEGG-GGTTCS--CGGGE
T ss_pred HHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCC------------eeeeecCCHH-HHHHhh--cCCce
Confidence 99998 5777 89999999999999999999999884 4444444332 221111 24689
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
+|+++|||||||.+++ +.+ + ++.+|.|+.|.+ + +.++..++ .+++|+++||||.+|++|+|+|
T Consensus 199 ~v~l~~p~NPtG~~~~-~~l-------~--~~~~i~d~~~~~----~-~~s~~~~~--~~~~i~~~S~SK~~g~~G~RiG 261 (427)
T 2hox_A 199 IEMVTSPNNPEGLLRH-AVI-------K--GCKSIYDMVYYW----P-HYTPIKYK--ADEDILLFTMSKFTGHSGSRFG 261 (427)
T ss_dssp EEEEESSCTTTCCCCC-CSS-------T--TCEEEEECTTCS----T-TTSCCCSC--BCCSEEEEEHHHHTSCGGGCCE
T ss_pred EEEEcCCCCCcccccH-HHH-------c--CCCEEEeecccC----C-CCCccccC--CCceEEEEeChhcCCCCCceEE
Confidence 9999999999999999 422 2 566788877643 1 33444443 5788999999999999999999
Q ss_pred EEEee-ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC---------c-HHHHHHHHHHHHHHHHHHHHHH
Q 013521 297 WTVVP-EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD---------G-FQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 297 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---------~-~~~~~~~~~~~~~~~~~l~~~L 365 (441)
|++++ +++ ++.+.........+++.++|.++.++|.+. + .+++++.++.++++++.+.+.|
T Consensus 262 ~~~~~~~~l--------~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 333 (427)
T 2hox_A 262 WALIKDESV--------YNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALL 333 (427)
T ss_dssp EEEECCHHH--------HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCHHH--------HHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99995 555 566777666666678999999988888742 1 2567888999999999999999
Q ss_pred HhC-CCee--------------eCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHH
Q 013521 366 QSL-GLKV--------------NGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYI 430 (441)
Q Consensus 366 ~~~-g~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~ 430 (441)
+++ |+.+ ..|.+|+|+|++++. ++.+++..+++++||.++||+.|+. ++++||||++.+++++
T Consensus 334 ~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~~ll~~~gI~v~pg~~f~~-~~~~~Ris~~~~~e~l 411 (427)
T 2hox_A 334 DQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIKTQDDF 411 (427)
T ss_dssp TTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHTTEECEEGGGGTS-CTTEEEEECSSCHHHH
T ss_pred HhCcCccccccccccccccccccCCCCceEEEEECCC-cHHHHHHHHHHHCCEEEcCCCccCC-CCCEEEEEecCCHHHH
Confidence 987 6654 234569999999975 4456778888778999999999976 6789999998889999
Q ss_pred HHHHHHHHhhC
Q 013521 431 SEACRRLKNFL 441 (441)
Q Consensus 431 ~~~l~~l~~~l 441 (441)
++++++|++++
T Consensus 412 ~~~l~~l~~~~ 422 (427)
T 2hox_A 412 DQLMYYLKDMV 422 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998763
No 79
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=100.00 E-value=6.3e-40 Score=318.38 Aligned_cols=323 Identities=18% Similarity=0.251 Sum_probs=256.4
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh--hCCCCCCcEEEcCCcHHHHHH-
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK--DMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~I~~t~G~~~al~~- 150 (441)
.|+|+.|++++++++.+.+++.+.+.+.. ....+|++..+ .++|+++|+++.+ ++++++++|++|+|+++++.+
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~ 108 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIA--TELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQL 108 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHG--GGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcc--cccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHH
Confidence 39999999988899999999999887532 23457866555 7999999999875 466788999999999999987
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC-CccEEEEcCCC
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS-RTDIIFFCSPN 224 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~-~~~~v~i~~p~ 224 (441)
+..++++||+|++++|+|+++...+...| .+++.++.+.+ +..+++. .+ ++++|++++||
T Consensus 109 ~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g------------~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~~ 174 (369)
T 3cq5_A 109 LQAFGGPGRTALGFQPSYSMHPILAKGTH------------TEFIAVSRGAD--FRIDMDVALEEIRAKQPDIVFVTTPN 174 (369)
T ss_dssp HHHHCSTTCEEEEEESSCTHHHHHHHHTT------------CEEEEEECCTT--SSCCHHHHHHHHHHHCCSEEEEESSC
T ss_pred HHHhcCCCCEEEEcCCChHHHHHHHHHcC------------CEEEEecCCcC--CCCCHHHHHHHhhccCCCEEEEeCCC
Confidence 67778999999999999999999998888 58888887543 3333322 13 78999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc-eeEEEecCCcccCCccceeEEEEeecc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE-VAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~-~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
||||.++|.+++++|++ .+++++|+||+|+++..+ .+...+.+..+ ++++++||||.+|++|+|+||++++++
T Consensus 175 nptG~~~~~~~l~~l~~---~~~~~li~De~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~ 248 (369)
T 3cq5_A 175 NPTGDVTSLDDVERIIN---VAPGIVIVDEAYAEFSPS---PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPA 248 (369)
T ss_dssp TTTCCCCCHHHHHHHHH---HCSSEEEEECTTGGGCCS---CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTH
T ss_pred CCCCCCCCHHHHHHHHH---hCCCEEEEECCchhhcCC---cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHH
Confidence 99999999666666655 556999999999987653 22333322234 789999999999989999999999987
Q ss_pred ccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEE
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWV 383 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 383 (441)
+ .+.+..... ..+++.+.|.++.+++++ .+++++.+++++++++.+.+.|++.|+.+.+ ..|+|+|+
T Consensus 249 ~--------~~~l~~~~~--~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~ 315 (369)
T 3cq5_A 249 F--------IDAVMLVRL--PYHLSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAARLEELGYAVVP-SESNFVFF 315 (369)
T ss_dssp H--------HHHHHTTSC--TTCSCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHHHHHHHTCEEEC-CSSSEEEE
T ss_pred H--------HHHHHHcCC--CCCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCEECC-CCCeEEEE
Confidence 6 344543322 235889999998888875 3567889999999999999999888888874 57889999
Q ss_pred EcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 384 QFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
+++ .+..++.+.+. ++||.+.||. .++++||++. +++++++++++|+++
T Consensus 316 ~~~-~~~~~l~~~l~-~~gi~v~~~~-----~~~~iRis~~-~~~~i~~~~~~l~~~ 364 (369)
T 3cq5_A 316 GDF-SDQHAAWQAFL-DRGVLIRDVG-----IAGHLRTTIG-VPEENDAFLDAAAEI 364 (369)
T ss_dssp ECC-SSHHHHHHHHH-HTTEECBCCS-----CTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred ECC-CCHHHHHHHHH-HCCEEEEECC-----CCCeEEEEeC-CHHHHHHHHHHHHHH
Confidence 987 35566777765 5699999981 3579999987 789999999999875
No 80
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=100.00 E-value=2.2e-40 Score=323.94 Aligned_cols=338 Identities=13% Similarity=0.114 Sum_probs=247.5
Q ss_pred CeEEeCCCCC---C--CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhh-hCCCCCCcEEEcCCcHH
Q 013521 73 RLIRLGIGDT---T--QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYK-DMGIEGDEIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~---~--~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~~~~I~~t~G~~~ 146 (441)
+.|||++|.+ + .+..+.|.+|.++.+.. +..+.|.|..|.++||+++++++.+ .........+.|.|++.
T Consensus 45 ~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~----~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtg 120 (420)
T 4h51_A 45 PKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDM----NLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTG 120 (420)
T ss_dssp SCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHT----TCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHH
T ss_pred CCEEeecCcccCCCCCCCCCHHHHHHHHHHhcC----CCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchH
Confidence 4799999943 2 23457788887776653 4445799999999999999999854 21112224455888888
Q ss_pred HHHH-H----HHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC--------CCC
Q 013521 147 DISR-L----QMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS--------TTS 213 (441)
Q Consensus 147 al~~-l----~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~--------~~~ 213 (441)
|+.. + ..+++|||+|++++|+|++|..+++..|.+ .+...+..+.+.+..+.+ ..+
T Consensus 121 a~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~-----------~V~~~~~~~~~~~~~d~~~~~~~l~~~~~ 189 (420)
T 4h51_A 121 AVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWK-----------NICTYAYYDPKTVSLNFEGMKKDILAAPD 189 (420)
T ss_dssp HHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCC-----------CEEEEECEEGGGTEECHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCe-----------EEEeeccccccccCCCHHHHHHHHhccCC
Confidence 7754 2 234579999999999999999999999942 233333332233333321 135
Q ss_pred CccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC---CCcccccCCCcceeEEEecCCcccCC
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS---PRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~---~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
+++++++++||||||.+++.+++++|+++|+++++++|+||+|.+|.+++. +..+....+..++++++.||||.|++
T Consensus 190 ~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~ 269 (420)
T 4h51_A 190 GSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGL 269 (420)
T ss_dssp SCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCC
T ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEecccccccc
Confidence 677878889999999999999999999999999999999999999988653 22222222334678999999999999
Q ss_pred ccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-----QALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~~L 365 (441)
+|+|+||++++.+.... ..++..++.......+.+++...|.++...+.+... .+++.++++|+++|+.+.+.|
T Consensus 270 ~G~RvG~~~~~~~~~~~-~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L 348 (420)
T 4h51_A 270 YSERAGTLSLLLKDKTK-RADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDEL 348 (420)
T ss_dssp GGGCEEEEEEECSCHHH-HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEecccCHHH-HHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998776311 011122333344556677888999988888876432 467889999999999999999
Q ss_pred HhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHHHhh
Q 013521 366 QSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRLKNF 440 (441)
Q Consensus 366 ~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l~~~ 440 (441)
++.| +.+..+++|+|.|+.++ .+.++ +|+++||++.|+. |||+++ ++++++.++++|.++
T Consensus 349 ~~~g~~~~~~~i~~q~GmF~~~gls----~e~v~-~L~e~~Vy~~~~g----------Ris~Agl~~~ni~~~a~aI~~v 413 (420)
T 4h51_A 349 LRLQTPGSWEHVINQIGMFSFLGLS----KAQCE-YCQNHNIFITVSG----------RANMAGLTHETALMLAQTINDA 413 (420)
T ss_dssp HHTTCSSCCTHHHHCCSSEEECCCC----HHHHH-HHHHTTEECCTTC----------EEEGGGCCHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCeecCCCceEEecCcC----HHHHH-HHHhCCEEEcCCC----------EEEeccCCHHHHHHHHHHHHHH
Confidence 9875 44455678999998764 34454 4567799998752 999966 899999999999876
Q ss_pred C
Q 013521 441 L 441 (441)
Q Consensus 441 l 441 (441)
+
T Consensus 414 v 414 (420)
T 4h51_A 414 V 414 (420)
T ss_dssp H
T ss_pred H
Confidence 3
No 81
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=100.00 E-value=1.1e-40 Score=326.60 Aligned_cols=335 Identities=15% Similarity=0.165 Sum_probs=255.6
Q ss_pred CCCeEEeCCCCC---C--CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEE--cCC
Q 013521 71 DARLIRLGIGDT---T--QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFI--SDG 143 (441)
Q Consensus 71 ~~~~i~l~~g~~---~--~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~--t~G 143 (441)
++++++|+.|.+ + .++++.+.+++.+.+.. ....+|++..|..++|+++|+++.. .++++++|++ |+|
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~g~~~lr~~la~~~~~-~~~~~~~v~~~~~~g 99 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET----ETTKTYAGLSGEPEFQKAMGELILG-DGLKSETTATLATVG 99 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH----CCCCCCCCSSCCHHHHHHHHHHHHG-GGCCGGGEEEEEEEH
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCC----cccCCCCCCCCcHHHHHHHHHHHhC-CCCCcccEEEEecCC
Confidence 457899999985 2 25678999999888764 3456798888999999999999843 2337899999 999
Q ss_pred cHHHHHHH-HHh--cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-------C-
Q 013521 144 AQSDISRL-QML--LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-------T- 212 (441)
Q Consensus 144 ~~~al~~l-~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-------~- 212 (441)
+++++.++ ..+ +.+||+|+++.|+|+++...+...| .+++.++.+.++++..+++. .
T Consensus 100 ~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 167 (394)
T 2ay1_A 100 GTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMG------------LPVQTYRYFDAETRGVDFEGMKADLAAAK 167 (394)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHT------------CCEEEEECEETTTTEECHHHHHHHHHTCC
T ss_pred chhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcC------------CceEEEecccccCCccCHHHHHHHHHhCC
Confidence 99999974 333 3599999999999999999999888 57888888532233333221 1
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC--CCCcccccCCCcceeEEEecCCcccCC
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP--SPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~--~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
++++++++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++ ...++..+....+++++++||||.+|+
T Consensus 168 ~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 247 (394)
T 2ay1_A 168 KGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGI 247 (394)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTC
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcC
Confidence 235667778999999999999999999999999999999999999887652 122333332223568999999999999
Q ss_pred ccceeEEEEe---eccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVV---PEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-----FQALRTVIDYYKENAKIIV 362 (441)
Q Consensus 291 ~G~r~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~ 362 (441)
+|+|+||+++ +++++. .+.+.+.......+.+++.+.|.++.+++++.. .+++++++++++++++.+.
T Consensus 248 ~G~riG~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 323 (394)
T 2ay1_A 248 YRERTGCLLALCADAATRE----LAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLA 323 (394)
T ss_dssp GGGCEEEEEEECSSHHHHH----HHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccceEEEEeCCHHHHH----HHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 444320 012223323334455568899998888887531 2578899999999999999
Q ss_pred HHHHhCC----CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-CHHHHHHHHHHH
Q 013521 363 DAFQSLG----LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-HREYISEACRRL 437 (441)
Q Consensus 363 ~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~~~~~~~~l~~l 437 (441)
+.|++++ +.+..+.+|+|+|++++ . +.+..+++++||.+.|| +||++.. +++++++++++|
T Consensus 324 ~~L~~~~~~~~~~~~~~~~g~~~~~~~~---~-~~~~~~l~~~gi~v~~~----------~Ris~~~~~~~~i~~~~~~l 389 (394)
T 2ay1_A 324 GELRDLSGSDRFGFVAEHRGMFSRLGAT---P-EQVKRIKEEFGIYMVGD----------SRINIAGLNDNTIPILARAI 389 (394)
T ss_dssp HHHHHHHTSSTTTHHHHCCSSEEECCCC---H-HHHHHHHHHHCEECCTT----------CEEEGGGCCTTTHHHHHHHH
T ss_pred HHHHhcCCCCCeeEEcCCceEEEeeCCC---H-HHHHHHHHhCCEEecCC----------CeEEeecCCHhhHHHHHHHH
Confidence 9998874 77766678999998875 2 45567777779999874 6999864 889999999999
Q ss_pred Hhh
Q 013521 438 KNF 440 (441)
Q Consensus 438 ~~~ 440 (441)
+++
T Consensus 390 ~~~ 392 (394)
T 2ay1_A 390 IEV 392 (394)
T ss_dssp HHH
T ss_pred HHc
Confidence 875
No 82
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=1.1e-38 Score=312.69 Aligned_cols=335 Identities=14% Similarity=0.164 Sum_probs=254.7
Q ss_pred CCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 72 ARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 72 ~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+++++|+.|.+ ++++++.+.+++.+.+.... .....|.+..|..++++++++++.+.++. ++|++|+|+++++.+
T Consensus 43 ~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~~v~~~~ggt~a~~~ 118 (398)
T 3a2b_A 43 RRVLMFGSNSYLGLTTDTRIIKAAQDALEKYG--TGCAGSRFLNGTLDIHVELEEKLSAYVGK--EAAILFSTGFQSNLG 118 (398)
T ss_dssp EEEEECSCSCTTCGGGCHHHHHHHHHHHHHHC--SCCCSBTTTTCCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHH
T ss_pred ceEEEeecccccCCCCCHHHHHHHHHHHHHcC--CCCCCcCcccCCcHHHHHHHHHHHHHhCC--CcEEEECCHHHHHHH
Confidence 46899999987 66678999999999887643 23445666678888999999888775554 699999999999998
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCC--CCccEEEEcCCCCcc
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT--SRTDIIFFCSPNNPT 227 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~--~~~~~v~i~~p~NPt 227 (441)
+..++++||.|+++.|+|+.+...+...| .+++.++..+.+.+...+... .++++|++++|+|||
T Consensus 119 ~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g------------~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~npt 186 (398)
T 3a2b_A 119 PLSCLMGRNDYILLDERDHASIIDGSRLSF------------SKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSME 186 (398)
T ss_dssp HHHHSSCTTCEEEEETTCCHHHHHHHHHSS------------SEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTT
T ss_pred HHHHHhCCCCEEEECCccCHHHHHHHHHcC------------CceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCC
Confidence 66778999999999999999999999888 578888762111110001111 178999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcce-eEEEecCCcccCCccceeEEEEeeccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREV-AIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~-~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
|.+++ +++|+++|++||+++|+||+|+++.++..+.++....+..++ +++++||||.++++| ||+++++++
T Consensus 187 G~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~-- 258 (398)
T 3a2b_A 187 GDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADV-- 258 (398)
T ss_dssp CCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHH--
T ss_pred CCccC---HHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC---cEEEeCHHH--
Confidence 99998 899999999999999999999987664322333332222334 699999999999778 999998877
Q ss_pred cCCchhHHHHHHH-HhhhcCCCcHHHHH-HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEE
Q 013521 307 SNGYPVIKDFNRI-VCTCFNGASNIVQA-GGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQ 384 (441)
Q Consensus 307 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 384 (441)
++.+... ......+.+.+.|. ++.++++. .+++++++++++++++.+.+.|+++|+++.++ .|+++|+.
T Consensus 259 ------~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~g~~~~~~ 329 (398)
T 3a2b_A 259 ------IDFLKHNARSVMFSASMTPASVASTLKALEI--IQNEPEHIEKLWKNTDYAKAQLLDHGFDLGAT-ESPILPIF 329 (398)
T ss_dssp ------HHHHHHHCHHHHSSBCCCHHHHHHHHHHHHH--HHHCTHHHHHHHHHHHHHHHHHHHTTCCBCSC-CSSEEEEE
T ss_pred ------HHHHHHhcccceecCCCCHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHhcCCCcCCC-CCCEEEEE
Confidence 3455443 22333334555665 45567753 34567889999999999999999888887654 58999999
Q ss_pred cCC-CChHHHHHHHHHhcCeEEeCCCCcCC-CCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 385 FPG-SSSWDVFAEILEKTHILTIPGSGFGP-GGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 385 ~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
++. .+..++...++++ ||.+.||..|.. .+.+++||++.. +++++++++++|+++
T Consensus 330 ~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~ 388 (398)
T 3a2b_A 330 IRSNEKTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKV 388 (398)
T ss_dssp CCCHHHHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 973 2455677777766 999999998853 346899999864 899999999999875
No 83
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.3e-37 Score=305.03 Aligned_cols=365 Identities=15% Similarity=0.139 Sum_probs=266.5
Q ss_pred cccchhhhHHhhhhCCC------CCccccccccccccccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCC-CCCCc
Q 013521 15 LKATVPFTMDFFLSSRW------PVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDT-TQPIP 87 (441)
Q Consensus 15 ~~~Tv~~a~~~l~~~g~------~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~ 87 (441)
...++.++|++++.+|+ ...++|+||.. .+++++||+.+.+ +++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~---------------------------~g~~~id~~~~~~~g~~~~ 59 (399)
T 3tqx_A 7 ILSQLNKEIEGLKKAGLYKSERIITSPQNAEIKV---------------------------GEKEVLNFCANNYLGLADH 59 (399)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCCCBCSCSSSEEEE---------------------------TTEEEEECSSCCTTSCTTC
T ss_pred HHHHHHHHHHHHHHcCCccccccccCCCCceEee---------------------------CCeeEEEeeccCcccccCC
Confidence 35679999999999999 24577777632 1346899999965 33568
Q ss_pred HHHHHHHHHHHhhccCCCCCC--CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEe
Q 013521 88 DIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQ 164 (441)
Q Consensus 88 ~~~~~al~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~ 164 (441)
+.+.+++.+.+..+....... .|+...+..++++.+++++ +.+ ++|++++| ++++.. +..++++||.|+++
T Consensus 60 ~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----~~~-~~i~~~sG-t~a~~~~l~~~~~~gd~v~~~ 133 (399)
T 3tqx_A 60 PALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL----GTD-DTILYSSC-FDANGGLFETLLGPEDAIISD 133 (399)
T ss_dssp HHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH----TCS-EEEEESCH-HHHHHTTHHHHCCTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH----CCC-cEEEECch-HHHHHHHHHHhcCCCCEEEEC
Confidence 999999999988754222222 2444556789999999987 544 67777777 557776 77788999999999
Q ss_pred CCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-C---CCccEEEEcCCCCccccCCCHHHHHHHH
Q 013521 165 DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-T---SRTDIIFFCSPNNPTGHAATWQQLKKLV 240 (441)
Q Consensus 165 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~ 240 (441)
.|+|+++...++..| .+++.++..+.+.+...+.. . .++++|++++|+||||.+++ +++|+
T Consensus 134 ~~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~ 198 (399)
T 3tqx_A 134 ELNHASIIDGIRLCK------------AQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD---LKSIC 198 (399)
T ss_dssp TTCCHHHHHHHHSCC------------SEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC---HHHHH
T ss_pred CcccHHHHHHHHHcC------------CceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC---HHHHH
Confidence 999999999988888 57888876321111100111 0 27899999999999999999 88999
Q ss_pred HHHHHcCcEEEEcccccccccCCCCCcccccCC-CcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHH
Q 013521 241 EFAKANGSIIVYDSAYAAYITDPSPRSIYEIPG-AREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRI 319 (441)
Q Consensus 241 ~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~-~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~ 319 (441)
++|++||+++|+||+|+....+....++....+ ..+.+++++||||+++ |++.||++++++++ +.+...
T Consensus 199 ~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~~~~~--------~~~~~~ 268 (399)
T 3tqx_A 199 DLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALG--GASGGYTSGHKEII--------EWLRNR 268 (399)
T ss_dssp HHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEECHHHH--------HHHHHH
T ss_pred HHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcc--cCceEEEEcCHHHH--------HHHHHh
Confidence 999999999999999974333332223333222 2345699999999997 45559999998873 445443
Q ss_pred H-hh-hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCC-ChHHHHHH
Q 013521 320 V-CT-CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGS-SSWDVFAE 396 (441)
Q Consensus 320 ~-~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 396 (441)
. .. ...+.+.+.+.++.+.++... ++.++++++++++++++.+.|+++|+++.+ +.++++|+.++.. +..++...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 346 (399)
T 3tqx_A 269 SRPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQLVP-GNHPIIPVMLGDAQLATNMADH 346 (399)
T ss_dssp CHHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CSSSEEEEEEECHHHHHHHHHH
T ss_pred CcceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCcCC-CCCCEEEEEeCCHHHHHHHHHH
Confidence 2 11 123466677777777775221 557899999999999999999998888774 5788899998742 45567777
Q ss_pred HHHhcCeEEeCCCCcC-CCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 397 ILEKTHILTIPGSGFG-PGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 397 ll~~~gi~v~pg~~f~-~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+++ +||.+.|+..+. +.+.+++||++. .+++++++++++|+++
T Consensus 347 l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 392 (399)
T 3tqx_A 347 LLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQV 392 (399)
T ss_dssp HHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHH
Confidence 776 599999876543 445679999984 5899999999999876
No 84
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=1e-35 Score=290.24 Aligned_cols=333 Identities=11% Similarity=0.078 Sum_probs=242.5
Q ss_pred CCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCCC--CCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGY--GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
..++||+.|.+ ++++++.+.+++.+.+...........| +...+..++|+++++++ +++ +.|++++| ++++
T Consensus 39 ~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~-~~i~~~sG-t~a~ 112 (384)
T 1bs0_A 39 RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----GYS-RALLFISG-FAAN 112 (384)
T ss_dssp EEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----TCS-EEEEESCH-HHHH
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh----CCC-cEEEeCCc-HHHH
Confidence 46899999985 5567889999999998764321112223 45578899999999997 554 67777777 6787
Q ss_pred HH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCC-CCccEEEEcCCCCc
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT-SRTDIIFFCSPNNP 226 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~-~~~~~v~i~~p~NP 226 (441)
.. +..++++||.|+++.|+|+.+...+...| .+++.+|..+...+...+... ++++++++++||||
T Consensus 113 ~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~np 180 (384)
T 1bs0_A 113 QAVIAAMMAKEDRIAADRLSHASLLEAASLSP------------SQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSM 180 (384)
T ss_dssp HHHHHHHCCTTCEEEEETTCCHHHHHHHHTSS------------SEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTT
T ss_pred HHHHHHhCCCCcEEEEcccccHHHHHHHHHcC------------CCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 76 67778999999999999999998888888 477887753211111001111 24678888899999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccc-ccCCCcceeEEEecCCcccCCccceeEEEEeecccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIY-EIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~-~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~ 305 (441)
||.+++ +++|+++|++||++||+||+|+.+.++....++. .++. +..++++||||.++.+| ||++++++++
T Consensus 181 tG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~~~G---G~~~~~~~~~ 252 (384)
T 1bs0_A 181 DGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV--KPELLVVTFGKGFGVSG---AAVLCSSTVA 252 (384)
T ss_dssp TCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC--CCSEEEEESSSTTSSCC---EEEEECHHHH
T ss_pred CCCccC---HHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCC--CCcEEEeeccchhhccC---cEEEeCHHHH
Confidence 999999 8899999999999999999998765431111221 2221 23499999999999666 9999987773
Q ss_pred ccCCchhHHHHHHHH-hhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEE
Q 013521 306 YSNGYPVIKDFNRIV-CTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWV 383 (441)
Q Consensus 306 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 383 (441)
+.+.... ... ..+.+.+.+.++.++++.....+.++.+++++++++.+.+.|+++|+++.+ ..++++|+
T Consensus 253 --------~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~ 323 (384)
T 1bs0_A 253 --------DYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLAD-SCSAIQPL 323 (384)
T ss_dssp --------HHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECS-CCSSBCCE
T ss_pred --------HHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccC-CCCCEEEE
Confidence 4444321 111 124678888777777752110156788999999999999999998888764 57788888
Q ss_pred EcCC-CChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 384 QFPG-SSSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 384 ~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
+++. .+..++.+.++++ ||.+.||..|+ +.+.+++||++.. +++++++++++|+++
T Consensus 324 ~~~~~~~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 324 IVGDNSRALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp EEESHHHHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHC-CcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 8863 2345677777665 99999998775 3345799999854 899999999999875
No 85
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=3.8e-35 Score=287.85 Aligned_cols=359 Identities=14% Similarity=0.137 Sum_probs=255.8
Q ss_pred cchhhhHHhhhhCCC------CCccccccccccccccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCC--CcH
Q 013521 17 ATVPFTMDFFLSSRW------PVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQP--IPD 88 (441)
Q Consensus 17 ~Tv~~a~~~l~~~g~------~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~--~~~ 88 (441)
....+.++.+.++|+ ...++|.++.. ..+..++||+.|.+ ++ .++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------------------------~~g~~~id~~~~~~-~g~~~~~ 62 (401)
T 1fc4_A 10 QQLTNDLETARAEGLFKEERIITSAQQADITV--------------------------ADGSHVINFCANNY-LGLANHP 62 (401)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCBCSCSSSEEEB--------------------------TTSCEEEECCCSCT-TSCTTCH
T ss_pred HHHHHHHHHHHhcCCeeeeeeeccCCCceEEe--------------------------eCCccEEEeeccCc-ccccCCH
Confidence 345667888888887 23445555421 12456899999954 43 589
Q ss_pred HHHHHHHHHHhhccCCCCCCCC--CCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeC
Q 013521 89 IITSAMAEHAFALSTVKGYKGY--GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQD 165 (441)
Q Consensus 89 ~~~~al~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~ 165 (441)
.+.+++.+.+..+........| +...+..++|+++|+++ +++ ++|++++|+ +++.. +..++++||.|+++.
T Consensus 63 ~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~-~~i~~~sGs-~a~~~~~~~~~~~gd~v~~~~ 136 (401)
T 1fc4_A 63 DLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----GME-DAILYSSCF-DANGGLFETLLGAEDAIISDA 136 (401)
T ss_dssp HHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----TCS-EEEEESCHH-HHHHTTHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh----CCC-cEEEeCChH-HHHHHHHHHHcCCCCEEEEcc
Confidence 9999999988764321111223 22567899999999997 665 777777775 46665 677889999999999
Q ss_pred CCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCCC-C---CccEEEEcCCCCccccCCCHHHHHHHHH
Q 013521 166 PSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTT-S---RTDIIFFCSPNNPTGHAATWQQLKKLVE 241 (441)
Q Consensus 166 p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~-~---~~~~v~i~~p~NPtG~~~~~~~~~~i~~ 241 (441)
|+|+++...+...| .+++.++..+...+...+... + ++++|++++||||||.+++ +++|.+
T Consensus 137 ~~~~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---~~~i~~ 201 (401)
T 1fc4_A 137 LNHASIIDGVRLCK------------AKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCD 201 (401)
T ss_dssp TCCHHHHHHHHTSC------------SEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHH
T ss_pred hhHHHHHHHHHHcC------------CceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC---HHHHHH
Confidence 99998888877777 477777642111110001110 1 6899999999999999999 899999
Q ss_pred HHHHcCcEEEEccccc-cccc-CCCC-CcccccCCCcceeEEEecCCccc-CCccceeEEEEeeccccccCCchhHHHHH
Q 013521 242 FAKANGSIIVYDSAYA-AYIT-DPSP-RSIYEIPGAREVAIEISSFSKFA-GFTGVRLGWTVVPEELRYSNGYPVIKDFN 317 (441)
Q Consensus 242 ~a~~~~~~ii~De~~~-~~~~-~~~~-~~~~~~~~~~~~~i~i~S~SK~~-~~~G~r~G~l~~~~~~~~~~~~~~~~~~~ 317 (441)
+|++||+++|+||+|+ ++.. .+.+ .+...+ .++.+++++||||.+ |.+| ||++++++++ +.+.
T Consensus 202 l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~--~~~~di~~~s~sK~~~~~~g---G~~~~~~~~~--------~~l~ 268 (401)
T 1fc4_A 202 LADKYDALVMVDDSHAVGFVGENGRGSHEYCDV--MGRVDIITGTLGKALGGASG---GYTAARKEVV--------EWLR 268 (401)
T ss_dssp HHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTC--TTCCSEEEEESSSTTCSSSC---EEEEECHHHH--------HHHH
T ss_pred HHHHcCCEEEEECcccccccCCCCCccHHHcCC--CcCCcEEEecchhhccCCCC---EEEEcCHHHH--------HHHH
Confidence 9999999999999996 6653 2322 111222 234569999999999 5444 9999987763 4444
Q ss_pred HHHh-h-hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC-CChHHHH
Q 013521 318 RIVC-T-CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG-SSSWDVF 394 (441)
Q Consensus 318 ~~~~-~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ 394 (441)
.... . ...+.+.+.+.++.+.++.. ...++.+++++++++.+.+.|+++|+++. +..++++|++++. .+..++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~l~ 345 (401)
T 1fc4_A 269 QRSRPYLFSNSLAPAIVAASIKVLEMV--EAGSELRDRLWANARQFREQMSAAGFTLA-GADHAIIPVMLGDAVVAQKFA 345 (401)
T ss_dssp HHCHHHHHSCCCCHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHTTCCBC-CSSSSEEEEEEECHHHHHHHH
T ss_pred HhCcCceeCCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCccc-CCCCCEEEEEcCChHHHHHHH
Confidence 3321 1 13357888888888777521 11367888999999999999998888876 4688899999964 2345666
Q ss_pred HHHHHhcCeEEeCCCCcCC-CCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 395 AEILEKTHILTIPGSGFGP-GGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 395 ~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+.+.++ ||.+.||..|+. .+.+++||++. .+++++++++++|+++
T Consensus 346 ~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 393 (401)
T 1fc4_A 346 RELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRI 393 (401)
T ss_dssp HHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHC-CcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 776655 999999987753 24578999985 5899999999999875
No 86
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=100.00 E-value=2.3e-34 Score=280.25 Aligned_cols=329 Identities=16% Similarity=0.163 Sum_probs=236.8
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhcc-CCCCCC--CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFALS-TVKGYK--GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~~-~~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
+.|+.+..+ ++|+.+.+++.+.+.... +..... .|.+..+..++++++++++ ++++++|++|+|+++++.+
T Consensus 3 ~yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a~~~~ 77 (384)
T 1eg5_A 3 VYFDNNATT-RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL----GVSPSEIFFTSCATESINWI 77 (384)
T ss_dssp EECBTTTCC-CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH----TSCGGGEEEESCHHHHHHHH
T ss_pred EEEecCccC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc----CCCCCeEEEECCHHHHHHHH
Confidence 566666655 678999999999887421 111111 2334567789999999997 7888999999999999997
Q ss_pred HHHhc----CCCCEEEEeCCCchhhHhHH---HHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEE
Q 013521 151 LQMLL----GSNVTVAVQDPSFPAYIDTS---VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDII 218 (441)
Q Consensus 151 l~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v 218 (441)
+..+. ++||+|++++|+|+++...+ ...| .+++.++.+.+. ..+++. .+++++|
T Consensus 78 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~--~~d~~~l~~~i~~~~~~v 143 (384)
T 1eg5_A 78 LKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKG------------FKVKYVPVDSRG--VVKLEELEKLVDEDTFLV 143 (384)
T ss_dssp HHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTT------------CEEEECCBCTTS--CBCHHHHHHHCCTTEEEE
T ss_pred HHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcC------------CEEEEEccCCCC--ccCHHHHHHHhCCCCeEE
Confidence 55565 79999999999999987766 4556 488888886532 233221 3578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcC--cEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANG--SIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~--~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
++++|+||||.+++ +++|.++|++|| ++||+||+|+ + ...+.++..+ +.++++.|+||.+|++| +|
T Consensus 144 ~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~-~--~~~~~~~~~~----~~di~~~s~sK~~g~~G--~G 211 (384)
T 1eg5_A 144 SIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQT-I--GKIPFSLEKL----EVDYASFSAHKFHGPKG--VG 211 (384)
T ss_dssp EEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTT-T--TTSCCCCTTT----CCSEEEEEGGGGTSCTT--CE
T ss_pred EEECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhhhh-c--CCcccCchhc----CCCEEEecHHHhcCCCc--eE
Confidence 99999999999999 789999999999 9999999998 2 2222233222 35699999999999778 79
Q ss_pred EEEeeccc-cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013521 297 WTVVPEEL-RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG 375 (441)
Q Consensus 297 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 375 (441)
|+++++++ +.... ............+.+.+.+.++.++++. ..+++++.+++++++++.+.+.|++.|+++..+
T Consensus 212 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 286 (384)
T 1eg5_A 212 ITYIRKGVPIRPLI----HGGGQERGLRSGTQNVPGIVGAARAMEI-AVEELSEAAKHMEKLRSKLVSGLMNLGAHIITP 286 (384)
T ss_dssp EEEECTTSCCCCSB----CSSCTTTTTBCSCCCHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSC
T ss_pred EEEEcCCCcccccc----ccCcccccccCCCCChHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCC
Confidence 99999875 21100 0000001122345788888888777763 224578899999999999999999888887654
Q ss_pred CC---ceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCC-----------------CCCeEEEEee--cCHHHHHHH
Q 013521 376 KN---APYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPG-----------------GNEHIRVSAF--GHREYISEA 433 (441)
Q Consensus 376 ~~---~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----------------~~~~iRls~~--~~~~~~~~~ 433 (441)
.. +.++++.+++.+..++.+.|. ++||.+.||..|+.. ..+++||++. .++++++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~ 365 (384)
T 1eg5_A 287 LEISLPNTLSVSFPNIRGSTLQNLLS-GYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYF 365 (384)
T ss_dssp TTSBCTTEEEEECTTCCHHHHHHHHH-HTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHH
T ss_pred cccCCCCEEEEEeCCCCHHHHHHHHh-hCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHH
Confidence 32 357888887556667777665 569999999877532 1478999986 589999999
Q ss_pred HHHHHhh
Q 013521 434 CRRLKNF 440 (441)
Q Consensus 434 l~~l~~~ 440 (441)
+++|+++
T Consensus 366 ~~~l~~~ 372 (384)
T 1eg5_A 366 LKKIEEI 372 (384)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 87
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=100.00 E-value=2.1e-34 Score=281.82 Aligned_cols=316 Identities=16% Similarity=0.148 Sum_probs=236.9
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHHHHHH-HHHhcCCCCE
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD-EIFISDGAQSDISR-LQMLLGSNVT 160 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~al~~-l~~l~~~gd~ 160 (441)
+.+.++.+.+++.+.+. .+|++ ...++++++++++.+.++++++ +|++|+|+++++.+ +..++++||+
T Consensus 42 ~~~~~~~v~~a~~~~~~--------~~~~~--~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~ 111 (393)
T 1vjo_A 42 PSNAHPSVLQAMNVSPV--------GHLDP--AFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDV 111 (393)
T ss_dssp CCCCCHHHHHHHSSCCC--------CTTSH--HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCE
T ss_pred CCCCCHHHHHHHhcccc--------cccCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCE
Confidence 34667888877766432 14643 3567888888888776688888 99999999999997 6777899999
Q ss_pred EEEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CC-CccEEEEcCCCCccccCCCHH
Q 013521 161 VAVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TS-RTDIIFFCSPNNPTGHAATWQ 234 (441)
Q Consensus 161 Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~-~~~~v~i~~p~NPtG~~~~~~ 234 (441)
|++++|+|++ +...++..| .+++.++.+.+..++++ +++ .. ++++|++++|+||||.+++
T Consensus 112 Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~-- 177 (393)
T 1vjo_A 112 VLIGVAGYFGNRLVDMAGRYG------------ADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQP-- 177 (393)
T ss_dssp EEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC--
T ss_pred EEEEcCChhHHHHHHHHHHcC------------CceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceecc--
Confidence 9999999999 888888888 58889988754222221 211 23 7899999999999999998
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHH
Q 013521 235 QLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIK 314 (441)
Q Consensus 235 ~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~ 314 (441)
+++|+++|++||+++|+||+|+ +. ..+..+ . ..+.++++.|+||.++.++ |+||++++++++ +
T Consensus 178 -l~~i~~l~~~~~~~li~Dea~~-~g--~~~~~~---~-~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~--------~ 240 (393)
T 1vjo_A 178 -LEGVGELCREFGTLLLVDTVTS-LG--GVPIFL---D-AWGVDLAYSCSQKGLGCSP-GASPFTMSSRAI--------E 240 (393)
T ss_dssp -CTTHHHHHHHHTCEEEEECTTT-TT--TSCCCT---T-TTTCSEEECCSSSTTCSCS-SCEEEEECHHHH--------H
T ss_pred -HHHHHHHHHHcCCEEEEECCcc-cc--CcCCcc---c-ccCccEEEEcCcccccCCC-ceEEEEECHHHH--------H
Confidence 7899999999999999999999 32 222222 1 1245699999999998677 999999998763 2
Q ss_pred HHHHH-------------------H-hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013521 315 DFNRI-------------------V-CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374 (441)
Q Consensus 315 ~~~~~-------------------~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 374 (441)
.+... . .....+.+.+.|.++.++++.....++++++++++++++++.+.|++.|+++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 320 (393)
T 1vjo_A 241 KLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHV 320 (393)
T ss_dssp HHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSS
T ss_pred HHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 22110 0 111115788888888888863222346888999999999999999988888766
Q ss_pred CCC---ceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--e-cCHHHHHHHHHHHHhhC
Q 013521 375 GKN---APYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--F-GHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~---~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~-~~~~~~~~~l~~l~~~l 441 (441)
+.+ +.++|+.++ +.+..++.+.+++++||.+.||+.|. .++++||++ . .+++++++++++|++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 321 EKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGEL--AGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp CGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCcccc--CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 543 357889886 45667777777766699999998765 367999994 2 36778999999998863
No 88
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=100.00 E-value=3.5e-34 Score=281.00 Aligned_cols=333 Identities=15% Similarity=0.111 Sum_probs=240.6
Q ss_pred CCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCC--CCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 72 ARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKG--YKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 72 ~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
++++++..+++ +++.++.+.+++.+.+........ ...|+...+..++|+++|+++ +. +++|++|+|++ ++
T Consensus 46 ~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~-~~~i~~~sG~~-a~ 119 (401)
T 2bwn_A 46 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH----QK-EAALVFSSAYN-AN 119 (401)
T ss_dssp EEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT----TC-SEEEEESCHHH-HH
T ss_pred CcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh----CC-CcEEEECCcHH-HH
Confidence 45789888776 555567899999999876432111 234666678999999999997 54 58999999988 54
Q ss_pred HH-HHHhc--CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C-CCccEEE
Q 013521 149 SR-LQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T-SRTDIIF 219 (441)
Q Consensus 149 ~~-l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~-~~~~~v~ 219 (441)
.. +..+. .+||.|+++.|+|+++...++..| .+++.++.++ ..++++ . +++++|+
T Consensus 120 ~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~d----~~~le~~l~~~~~~~~~~v~ 183 (401)
T 2bwn_A 120 DATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNA------------GPKRIFRHND----VAHLRELIAADDPAAPKLIA 183 (401)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSC------------CCEEEECTTC----HHHHHHHHHHSCTTSCEEEE
T ss_pred HHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcC------------CeEEEEcCCC----HHHHHHHHHhhccCCceEEE
Confidence 44 34333 699999999999999998888887 5788888641 112221 1 4789999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCC-cceeEEEecCCcccCCccceeEEE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGA-REVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
+++|+||||.+++ +++|+++|++||+++|+||+|+...+.....++....+. .+.+++++||||.+|++| ||+
T Consensus 184 ~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~ 257 (401)
T 2bwn_A 184 FESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYI 257 (401)
T ss_dssp EESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEE
T ss_pred EecCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEE
Confidence 9999999999999 889999999999999999999954443222222221111 234699999999999888 999
Q ss_pred EeeccccccCCchhHHHHHHHHh-hh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013521 299 VVPEELRYSNGYPVIKDFNRIVC-TC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK 376 (441)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 376 (441)
+++++++ +.+..... .. ..+++.+.+.++.++++......+++++++++++++++.+.|++.|+++.++
T Consensus 258 ~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~- 328 (401)
T 2bwn_A 258 AASARMV--------DAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH- 328 (401)
T ss_dssp EECHHHH--------HHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-
T ss_pred ecCHHHH--------HHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCC-
Confidence 9987663 33432211 11 1224456776666666421112347788899999999999998888887765
Q ss_pred CceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCC-CCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 377 NAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPG-GNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 377 ~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~-~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
.+.++|+.++. .+..++.+.|++++||.+.|+..|+.. +.+++|+++. .+++++++++++|++++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~ 397 (401)
T 2bwn_A 329 GSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 397 (401)
T ss_dssp SSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence 45689999973 334567777765669999999877643 4579999985 48999999999998864
No 89
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=2.6e-34 Score=283.36 Aligned_cols=329 Identities=16% Similarity=0.158 Sum_probs=240.3
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCC--CCCCCCC--CcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVK--GYKGYGA--EQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQS 146 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~--~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~ 146 (441)
+++++|+.|.++ +.|+.+.+++.+.+....... +...|++ ..+..++|+++++++ +. ++++|++|+|+++
T Consensus 27 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~g~t~ 101 (420)
T 1t3i_A 27 HPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI----NARSPREIVYTRNATE 101 (420)
T ss_dssp EECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT----TCSCGGGEEEESSHHH
T ss_pred CceEEecCCccC-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHc----CCCCCCeEEEcCChHH
Confidence 348999999988 788999999999887642111 2334543 467889999999996 66 6799999999999
Q ss_pred HHHH-HHHh----cCCCCEEEEeCCCchh----hHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C
Q 013521 147 DISR-LQML----LGSNVTVAVQDPSFPA----YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T 212 (441)
Q Consensus 147 al~~-l~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~ 212 (441)
++.+ +..+ +++||+|+++.|+|++ +...++..| .+++.++.+.+. ..+++. .
T Consensus 102 a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~--~~d~~~l~~~l~ 167 (420)
T 1t3i_A 102 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTG------------AVLKFVQLDEQE--SFDLEHFKTLLS 167 (420)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHC------------CEEEEECBCTTS--SBCHHHHHHHCC
T ss_pred HHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcC------------cEEEEeccCCCC--CcCHHHHHHhhC
Confidence 9998 5667 7899999999999999 455566677 588888886432 233221 3
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
+++++|++++|+||||.+++ +++|+++|++||+++|+|++|+.... +..+..+ +.++++.|+||.+|.+|
T Consensus 168 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~~----~~di~~~s~sK~~~~~g 237 (420)
T 1t3i_A 168 EKTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY---PLDVQLI----DCDWLVASGHKMCAPTG 237 (420)
T ss_dssp TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEEGGGTTSCTT
T ss_pred CCceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCc---cCchhhc----CCCEEEEehhhhcCCCc
Confidence 57899999999999999999 88999999999999999999985432 2223223 34689999999988667
Q ss_pred ceeEEEEeeccccccCCchhHHHHHHHHhh--------------------hcCCCcHHHHHHHHH-hcCCCcHHHHHHHH
Q 013521 293 VRLGWTVVPEELRYSNGYPVIKDFNRIVCT--------------------CFNGASNIVQAGGLA-CLSPDGFQALRTVI 351 (441)
Q Consensus 293 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~a~~~-~l~~~~~~~~~~~~ 351 (441)
+||++++++++ +.+...... ...+++.+.+.++.. +++.....++++++
T Consensus 238 --~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 307 (420)
T 1t3i_A 238 --IGFLYGKEEIL--------EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIH 307 (420)
T ss_dssp --CEEEEECHHHH--------HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred --eEEEEEchHHH--------hhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999988763 222211110 012345566655443 33311112357888
Q ss_pred HHHHHHHHHHHHHHHhC-CCeeeCCC-----CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC-----CC-CCeE
Q 013521 352 DYYKENAKIIVDAFQSL-GLKVNGGK-----NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP-----GG-NEHI 419 (441)
Q Consensus 352 ~~~~~~~~~l~~~L~~~-g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~-~~~i 419 (441)
++++++++.+.+.|+++ |+++..+. .+.++++.+++.+..++.+. ++++||.+.||..|.. .+ ++++
T Consensus 308 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~g~~~~i 386 (420)
T 1t3i_A 308 NYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATM-VDQDGIAIRSGHHCTQPLHRLFDASGSA 386 (420)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHH-HHTTTEECBCSCTTCHHHHHHTTCCCCE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHH-HHHCCeEEeeccccchHHHHhcCCCCeE
Confidence 99999999999999988 88887654 26677777875455566654 5566999999975531 12 6789
Q ss_pred EEEeec--CHHHHHHHHHHHHhh
Q 013521 420 RVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 420 Rls~~~--~~~~~~~~l~~l~~~ 440 (441)
||++.. +++++++++++|+++
T Consensus 387 Ris~~~~~~~~~i~~~~~~l~~~ 409 (420)
T 1t3i_A 387 RASLYFYNTKEEIDLFLQSLQAT 409 (420)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHH
Confidence 999864 899999999999875
No 90
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=1.1e-33 Score=277.59 Aligned_cols=329 Identities=17% Similarity=0.170 Sum_probs=238.2
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCC----CCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGY----KGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQS 146 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~----~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~ 146 (441)
+++++|+.+.++ +.|+.+.+++.+.+......... .+|.+..+..++|+++++++ +. ++++|++|+|+++
T Consensus 22 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~g~t~ 96 (406)
T 1kmj_A 22 LPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----NARSAEELVFVRGTTE 96 (406)
T ss_dssp EECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----TCSCGGGEEEESSHHH
T ss_pred CceEEecCCccC-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHc----CCCCCCeEEEeCChhH
Confidence 358999999987 67889999999988764210111 11334567889999999986 66 6789999999999
Q ss_pred HHHH-HHHh----cCCCCEEEEeCCCchhhH----hHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C
Q 013521 147 DISR-LQML----LGSNVTVAVQDPSFPAYI----DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T 212 (441)
Q Consensus 147 al~~-l~~l----~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~ 212 (441)
++.+ +..+ +++||+|+++.|+|++.. ..+...| .+++.++.+.+. ..+++. .
T Consensus 97 a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~--~~d~~~l~~~l~ 162 (406)
T 1kmj_A 97 GINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG------------AELRVIPLNPDG--TLQLETLPTLFD 162 (406)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHT------------CEEEEECBCTTS--CBCGGGHHHHCC
T ss_pred HHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCC------------CEEEEEecCCCC--CcCHHHHHHHhc
Confidence 9998 5666 789999999999998754 3345566 588888886532 233322 3
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
+++++|++++|+||||.+++ +++|+++|++||+++|+|++|+.... +..+... +.++++.|+||.+|.+|
T Consensus 163 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~---~~~~~~~----~~d~~~~s~~K~~g~~G 232 (406)
T 1kmj_A 163 EKTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH---PVDVQAL----DCDFYVFSGHKLYGPTG 232 (406)
T ss_dssp TTEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEEGGGTTSCTT
T ss_pred cCCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCC---CCccccc----CCCEEEEEchhccCCCC
Confidence 57899999999999999999 89999999999999999999985322 2222222 35699999999998777
Q ss_pred ceeEEEEeeccccccCCchhHHHHHHHHh---------------------hhcCCCcHHHHHHHH-HhcCCCcHHHHHHH
Q 013521 293 VRLGWTVVPEELRYSNGYPVIKDFNRIVC---------------------TCFNGASNIVQAGGL-ACLSPDGFQALRTV 350 (441)
Q Consensus 293 ~r~G~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~-~~l~~~~~~~~~~~ 350 (441)
+||++++++++ +.+..... ....+++.+.+.+++ ++++.....++++.
T Consensus 233 --~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~ 302 (406)
T 1kmj_A 233 --IGILYVKEALL--------QEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNI 302 (406)
T ss_dssp --CEEEEECHHHH--------HHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred --cEEEEEeHHHH--------hhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence 89999987763 22221110 011224556665544 34431111245788
Q ss_pred HHHHHHHHHHHHHHHHhC-CCeeeCCC-CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC------CCCCeEEEE
Q 013521 351 IDYYKENAKIIVDAFQSL-GLKVNGGK-NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP------GGNEHIRVS 422 (441)
Q Consensus 351 ~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~~~iRls 422 (441)
+++++++++++.+.|+++ |+++..+. .+.++++.+++.+..++.+.+ .++||.+.||..|.. ..++++||+
T Consensus 303 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~g~~~~iRis 381 (406)
T 1kmj_A 303 AEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRAS 381 (406)
T ss_dssp HHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHH-HHTTEECEEECTTCHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHH-hhCCcEEEeccccchHHHHhcCCCCeEEEE
Confidence 889999999999999988 88887752 455666677755566666555 556999999986531 226899999
Q ss_pred eec--CHHHHHHHHHHHHhh
Q 013521 423 AFG--HREYISEACRRLKNF 440 (441)
Q Consensus 423 ~~~--~~~~~~~~l~~l~~~ 440 (441)
+.. ++++++++++.|+++
T Consensus 382 ~~~~~t~~~i~~~~~~l~~~ 401 (406)
T 1kmj_A 382 LAMYNTHEEVDRLVTGLQRI 401 (406)
T ss_dssp CCTTCCHHHHHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHH
Confidence 854 899999999999875
No 91
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=8.3e-34 Score=280.69 Aligned_cols=333 Identities=17% Similarity=0.187 Sum_probs=239.2
Q ss_pred CCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCCCCCCC----CCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcH
Q 013521 71 DARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVKGYKGY----GAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~~~~~Y----~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~ 145 (441)
+.+++||+.|++ ++..++.+.+++.+.+..+.. +...| +......++++.+++++ +.+ +.+++++|++
T Consensus 63 g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~G~~~~~~~l~~~la~~~----g~~-~~i~~~sGs~ 135 (427)
T 2w8t_A 63 GKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGS--GTCGSRMLNGTFHDHMEVEQALRDFY----GTT-GAIVFSTGYM 135 (427)
T ss_dssp TEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCS--CCCSCTTTTCCCHHHHHHHHHHHHHH----TCS-EEEEESCHHH
T ss_pred CceEEEEECcccccCCCCHHHHHHHHHHHHHhCC--CCcccccccCCcHHHHHHHHHHHHHh----CCC-ceEEecCcHH
Confidence 356899999985 556788999999999876431 22222 23345588888888886 543 5566666655
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-CC-CccEEEEcC
Q 013521 146 SDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-TS-RTDIIFFCS 222 (441)
Q Consensus 146 ~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~~-~~~~v~i~~ 222 (441)
++.. +..++++||.|+++.|+|+++...+...| .+++.++..+-+.+...+.. .+ ++++|++++
T Consensus 136 -a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g------------~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~ 202 (427)
T 2w8t_A 136 -ANLGIISTLAGKGEYVILDADSHASIYDGCQQGN------------AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEG 202 (427)
T ss_dssp -HHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSC------------SEEEEECTTCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred -HHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcC------------CeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcC
Confidence 6554 67778999999999999999999988888 47777764211111000111 11 789999999
Q ss_pred CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccc-cCCCcceeEEEecCCcccCCccceeEEEEee
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYE-IPGAREVAIEISSFSKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~-~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~ 301 (441)
|+||||.+++ +++|+++|++||+++|+||+|+.+.++....++.. ++-.++.+++++||||.+|++| ||++++
T Consensus 203 ~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~ 276 (427)
T 2w8t_A 203 VYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSN 276 (427)
T ss_dssp EETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEEC
T ss_pred CCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCC---CEEEeC
Confidence 9999999999 89999999999999999999998776533333433 2212356799999999998777 999999
Q ss_pred ccccccCCchhHHHHHHH-Hhh-hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-Cc
Q 013521 302 EELRYSNGYPVIKDFNRI-VCT-CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK-NA 378 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~ 378 (441)
++++ +.+... ... ...+.+++.+.++.+.++.. +++++++++++++++++.+.|+++|+.+..+. .+
T Consensus 277 ~~l~--------~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~ 346 (427)
T 2w8t_A 277 HPKF--------EAVRLACRPYIFTASLPPSVVATATTSIRKL--MTAHEKRERLWSNARALHGGLKAMGFRLGTETCDS 346 (427)
T ss_dssp CTTG--------GGGGGTCHHHHSSCCCCHHHHHHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCS
T ss_pred HHHH--------HHHHHhcccccccCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCC
Confidence 8774 222221 111 12335666666555666521 12467889999999999999998888876334 67
Q ss_pred eEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCC-CCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 379 PYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGP-GGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 379 ~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
+++|+.++. ....++...|+++ ||.+.|+..|+. .+.+++||++.. +++++++++++|+++
T Consensus 347 ~~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~ 411 (427)
T 2w8t_A 347 AIVAVMLEDQEQAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAA 411 (427)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 899999973 2345677777766 999999987753 345799999854 899999999999875
No 92
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=2.2e-33 Score=270.16 Aligned_cols=320 Identities=12% Similarity=0.073 Sum_probs=228.2
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEE
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTV 161 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~V 161 (441)
+.++|+.+.+++.+.+.. ...|....+..++|+++++++ ++++++|++|+|+++++.+ +..++++||+|
T Consensus 9 p~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~----g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~v 78 (352)
T 1iug_A 9 PVRLHPKALEALARPQLH------HRTEAAREVFLKARGLLREAF----RTEGEVLILTGSGTLAMEALVKNLFAPGERV 78 (352)
T ss_dssp SCCCCHHHHHHHHSCCCC------TTSHHHHHHHHHHHHHHHHHH----TCSSEEEEEESCHHHHHHHHHHHHCCTTCEE
T ss_pred CCCCCHHHHHHhccCCCC------ccCHHHHHHHHHHHHHHHHHh----CCCCceEEEcCchHHHHHHHHHhccCCCCeE
Confidence 356778888888775431 111212346688999999987 7778899999999999998 67778999999
Q ss_pred EEeCCCchhhH--hHHHHhccccccccccCccceeEEeecCCCCCccCC-CCCCCCccEEEEcCCCCccccCCCHHHHHH
Q 013521 162 AVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LSTTSRTDIIFFCSPNNPTGHAATWQQLKK 238 (441)
Q Consensus 162 lv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~ 238 (441)
++++|+|+++. ..+...| .+++.++.+.++.++++ +++ +++++|++++|+||||.+++ +++
T Consensus 79 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~-~~~~~v~~~~~~nptG~~~~---l~~ 142 (352)
T 1iug_A 79 LVPVYGKFSERFYEIALEAG------------LVVERLDYPYGDTPRPEDVAK-EGYAGLLLVHSETSTGALAD---LPA 142 (352)
T ss_dssp EEEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCTTTSCC-SSCSEEEEESEETTTTEECC---HHH
T ss_pred EEEeCCchhHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHhc-cCCcEEEEEEecCCcceecC---HHH
Confidence 99999999975 3334456 48888888754333322 333 67899999999999999999 789
Q ss_pred HHHHHHHc--CcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC-----ch
Q 013521 239 LVEFAKAN--GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG-----YP 311 (441)
Q Consensus 239 i~~~a~~~--~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~-----~~ 311 (441)
|.++|++| |+++|+|++|+.. ..+..+... +.++++.|+||+++ ++.++||++++++.+..-. ..
T Consensus 143 i~~l~~~~~~~~~li~D~a~~~~---~~~~~~~~~----~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~~ 214 (352)
T 1iug_A 143 LARAFKEKNPEGLVGADMVTSLL---VGEVALEAM----GVDAAASGSQKGLM-CPPGLGFVALSPRALERLKPRGYYLD 214 (352)
T ss_dssp HHHHHHHHCTTCEEEEECTTTBT---TBCCCSGGG----TCSEEEEESSSTTC-CCSCEEEEEECHHHHHTCCCCSSTTC
T ss_pred HHHHHHhhCCCCEEEEECCcccc---Ccceecccc----CeeEEEecCccccc-CCCceeEEEECHHHHHHhhCCCceee
Confidence 99999999 9999999999731 112222222 34588999999554 3345899999887641100 00
Q ss_pred hHHHHHHH-HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-CceEEEEEcC-CC
Q 013521 312 VIKDFNRI-VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK-NAPYVWVQFP-GS 388 (441)
Q Consensus 312 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~~~~-~~ 388 (441)
....+... ......+.+...+.++.++++... +++++.+++++++++++.+.|+++|+++..+. .++++|++++ +.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 293 (352)
T 1iug_A 215 LARELKAQKEGESAWTPAINLVLAVAAVLEEVL-PRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGV 293 (352)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTC
T ss_pred HHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCC
Confidence 01111111 112233456666666666664211 22678899999999999999998888887654 6789999997 55
Q ss_pred ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 389 SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 389 ~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+..++.+.+.++ ||.+.||.. +..++++||++. .+++++++++++|+++
T Consensus 294 ~~~~~~~~l~~~-gi~v~~~~~--~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 344 (352)
T 1iug_A 294 PYARVKEAFAQR-GAVIAGGQG--PLKGKVFRLSLMGAYDRYEALGVAGMFREV 344 (352)
T ss_dssp CHHHHHHHHHTT-TEECEECCG--GGTTTEEEECCCSSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC-CEEEEeCCC--ccCCCEEEEEccccCCHHHHHHHHHHHHHH
Confidence 667777777655 999999873 234679999985 3789999999999875
No 93
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=100.00 E-value=2e-33 Score=273.87 Aligned_cols=321 Identities=14% Similarity=0.148 Sum_probs=235.1
Q ss_pred CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcHHHHHH-HHHhcCCCCEE
Q 013521 84 QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQSDISR-LQMLLGSNVTV 161 (441)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~~al~~-l~~l~~~gd~V 161 (441)
.+.++.+.+++.+.+. .+|++ ...++++++++++.+.++++ +++|++|+|+++++.+ +..++++||+|
T Consensus 29 ~~~~~~v~~a~~~~~~--------~~~~~--~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~v 98 (386)
T 2dr1_A 29 VACFPEVLEIMKVQMF--------SHRSK--EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKV 98 (386)
T ss_dssp CCCCHHHHHHTTSCCC--------CTTSH--HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEE
T ss_pred cCCcHHHHHHHhcccc--------cccCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeE
Confidence 3566777777665332 25643 23678888888887755766 7789999999999998 56678999999
Q ss_pred EEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC----CCCccEEEEcCCCCccccCCCHH
Q 013521 162 AVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST----TSRTDIIFFCSPNNPTGHAATWQ 234 (441)
Q Consensus 162 lv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~----~~~~~~v~i~~p~NPtG~~~~~~ 234 (441)
++++|+|++ +...+...| .+++.++.+.+..++++ +++ .+++++|++++|+||||.+++
T Consensus 99 l~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~-- 164 (386)
T 2dr1_A 99 LVTIIGAFGKRYKEVVESNG------------RKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP-- 164 (386)
T ss_dssp EEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC--
T ss_pred EEEcCCchhHHHHHHHHHhC------------CceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC--
Confidence 999999998 788888888 58888988753222221 111 357899999999999999998
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCC-----
Q 013521 235 QLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNG----- 309 (441)
Q Consensus 235 ~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~----- 309 (441)
+++|+++|++||+++|+|++|+.+... .++.. .++++++.|+||.++.+ .++||++++++++..-.
T Consensus 165 -l~~i~~l~~~~~~~li~D~a~~~~~~~---~~~~~----~~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~ 235 (386)
T 2dr1_A 165 -LPELAKVAKEHDKLVFVDAVSAMGGAD---IKFDK----WGLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPER 235 (386)
T ss_dssp -HHHHHHHHHHTTCEEEEECTTTBTTBC---CCTTT----TTCSEEEEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTC
T ss_pred -HHHHHHHHHHcCCeEEEEccccccCcc---ccccc----cCCcEEEEeccccccCC-CceEEEEECHHHHHHHhcCCCC
Confidence 899999999999999999999965432 22221 24569999999999854 35999999987641100
Q ss_pred ---chhHHHHHHH--HhhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC---CceE
Q 013521 310 ---YPVIKDFNRI--VCTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQSLGLKVNGGK---NAPY 380 (441)
Q Consensus 310 ---~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~ 380 (441)
......+... ......+.+.+.|.++.++++..... ++++++++++++++.+.+.|+++|+++..+. .+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 315 (386)
T 2dr1_A 236 GWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTI 315 (386)
T ss_dssp CSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSE
T ss_pred ceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCce
Confidence 0000001111 11233457788888887777631111 2578899999999999999998888876653 3788
Q ss_pred EEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 381 VWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 381 ~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+|++++ +.+..++.+.|+++ ||.+.||..|. ..+++||++. .+++++++++++|+++
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~~--~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 375 (386)
T 2dr1_A 316 TAVLTPPGIKGDEVYEAMRKR-GFELAKGYGSV--KEKTFRIGHMGYMKFEDIQEMLDNLREV 375 (386)
T ss_dssp EEEECCTTCCHHHHHHHHHHT-TEECEECCGGG--TTTEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHC-CeEEecCcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999997 45667788887776 99999998653 4579999986 5899999999999875
No 94
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=100.00 E-value=3.4e-33 Score=274.01 Aligned_cols=316 Identities=13% Similarity=0.105 Sum_probs=225.5
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcH---HHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNM---ALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~---~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
.++++++|+++.|+.+.+++.+.+..+......+.|+. .|.+ ++++++|+++ +. +++++++|+++++.+
T Consensus 21 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~----g~--~~~i~~~~g~~ai~~~ 93 (404)
T 1e5e_A 21 QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLE----KT--EACVATSSGMGAIAAT 93 (404)
T ss_dssp TTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHH----TC--SEEEEESSHHHHHHHH
T ss_pred CCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHh----CC--CcEEEeCChHHHHHHH
Confidence 46889999999888887777776653332234556865 5666 8999999997 44 377777777899987
Q ss_pred HHHhcCCCCEEEEeCCCchhhHh----HHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYID----TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNP 226 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NP 226 (441)
+..++++||.|+++.|+|+++.. .+...| .+++.++.++.+.+...+ .+++++|++++|+||
T Consensus 94 ~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g------------~~~~~v~~~d~~~l~~~i--~~~t~~v~l~~p~Np 159 (404)
T 1e5e_A 94 VLTILKAGDHLISDECLYGCTHALFEHALTKFG------------IQVDFINTAIPGEVKKHM--KPNTKIVYFETPANP 159 (404)
T ss_dssp HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT------------CEEEEECTTSTTHHHHHC--CTTEEEEEEESSCTT
T ss_pred HHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcC------------CEEEEECCCCHHHHHHhc--CCCCcEEEEECCCCC
Confidence 56788999999999999999888 566677 588888875211111111 357999999999999
Q ss_pred cccCCCHHHHHHHHHHHHH-cCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee-EEEEeeccc
Q 013521 227 TGHAATWQQLKKLVEFAKA-NGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPEEL 304 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~-~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~ 304 (441)
||.+++ +++|+++|++ ||+++|+||+|..+.+.. ++ .+ ++++++.|+||.++.+|+|+ ||++++++.
T Consensus 160 tG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~---~~-~~----~~di~~~S~sK~~~~~g~ri~G~~~~~~~~ 228 (404)
T 1e5e_A 160 TLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN---PV-DF----GVDVVVHSATKYINGHTDVVAGLICGKADL 228 (404)
T ss_dssp TCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC---GG-GG----TCSEEEEETTTTTTCSSCCCCEEEEECHHH
T ss_pred CCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC---cc-cc----CCEEEEEcCccccCCCCCCeEEEEEECHHH
Confidence 999998 8999999999 999999999999876531 22 22 45799999999999999998 999999887
Q ss_pred cccCCchhHH-HHHHHHhhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC-C-----------
Q 013521 305 RYSNGYPVIK-DFNRIVCTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-L----------- 370 (441)
Q Consensus 305 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~----------- 370 (441)
+ + .+....... ....+++.+.++.+.++. +..+.+...++.+.+.+.|++.. +
T Consensus 229 ~--------~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~ 295 (404)
T 1e5e_A 229 L--------QQIRMVGIKDITGSVISPHDAWLITRGLST-----LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDH 295 (404)
T ss_dssp H--------HHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSS
T ss_pred H--------HHHHHHHHHhCCCCCCCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCC
Confidence 4 3 454443332 345788888888888863 23344555666677777776552 2
Q ss_pred ---eeeCCC---CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC-----------------------CC--CCeE
Q 013521 371 ---KVNGGK---NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP-----------------------GG--NEHI 419 (441)
Q Consensus 371 ---~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----------------------~~--~~~i 419 (441)
++..++ .|.++.+++++ ..+....++++.|| +.+|..|+. .+ +++|
T Consensus 296 p~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~i 372 (404)
T 1e5e_A 296 EGHDIAKKQMRMYGSMITFILKS--GFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMI 372 (404)
T ss_dssp TTHHHHHHHCSSCCSEEEEEETT--HHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEE
T ss_pred ccHHHHHhhCCCCceEEEEEeCC--CHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeE
Confidence 111111 24454448863 23456667888899 666665552 22 6899
Q ss_pred EEEeecCHHHHHHHHHHHHhh
Q 013521 420 RVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 420 Rls~~~~~~~~~~~l~~l~~~ 440 (441)
|||++. ++++++++.|+++
T Consensus 373 Ris~g~--e~~~~li~~l~~a 391 (404)
T 1e5e_A 373 RLSVGI--EDADELIADFKQG 391 (404)
T ss_dssp EEECCS--SCHHHHHHHHHHH
T ss_pred EEEeCC--CCHHHHHHHHHHH
Confidence 999876 6667777776654
No 95
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=100.00 E-value=6.2e-33 Score=270.80 Aligned_cols=333 Identities=14% Similarity=0.100 Sum_probs=235.5
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCC--CCCCCC-CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKG--YKGYGA-EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~--~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
+.++|+.+.+. +.|+.+.+++.+.+........ ...|+. ..+..++|+++++++ ++++++|++|+|+++++.
T Consensus 16 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a~~ 90 (390)
T 1elu_A 16 NKTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF----NVDPNTITITDNVTTGCD 90 (390)
T ss_dssp TSEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT----TSCGGGEEEESSHHHHHH
T ss_pred CeEEecCCccC-CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc----CCCHHHEEEeCChHHHHH
Confidence 47899988743 5678899999998865321011 113533 367899999999996 788889999999999999
Q ss_pred H-HHHh-cCCCCEEEEeCCCchhhHhH----HHHhccccccccccCccceeEEeecCCCCCccCCC---CC--CCCccEE
Q 013521 150 R-LQML-LGSNVTVAVQDPSFPAYIDT----SVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL---ST--TSRTDII 218 (441)
Q Consensus 150 ~-l~~l-~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~---~~--~~~~~~v 218 (441)
+ +..+ +++||+|+++.|+|+++... ++..| .+++.++.+.+.++..++ ++ .+++++|
T Consensus 91 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v 158 (390)
T 1elu_A 91 IVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFG------------ITYRFFPVAATLNQGDAAAVLANHLGPKTRLV 158 (390)
T ss_dssp HHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHC------------CEEEEECCGGGSSSSCHHHHHHTTCCTTEEEE
T ss_pred HHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhC------------cEEEEEcCCCCCCccchHHHHHHhcCCCceEE
Confidence 8 5666 68999999999999997654 34556 488888886322222222 21 3578999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHH----HcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccce
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAK----ANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~----~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
++++|+||||.+++ +++|.++|+ +||+++|+||+|+... .+..+.. .+.++++.|+||.+. +|.+
T Consensus 159 ~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~---~~~~~~~----~~~d~~~~s~~K~~~-~~~g 227 (390)
T 1elu_A 159 ILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGS---LPLDFSR----LEVDYYAFTGHKWFA-GPAG 227 (390)
T ss_dssp EEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTT---BCCCTTT----SCCSEEEEESSSTTC-CCTT
T ss_pred EEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCC---cCCChhh----cCCCEEEcccccccc-CCCc
Confidence 99999999999999 889999999 9999999999998421 1222211 234699999999553 6778
Q ss_pred eEEEEeeccccccCCchhHHHHH---------------HHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHH
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFN---------------RIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENA 358 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~ 358 (441)
+||++++++++..-..... .+. ........+.+.+.+.++.+++..... .+++++++++++++
T Consensus 228 ~G~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~ 306 (390)
T 1elu_A 228 VGGLYIHGDCLGEINPTYV-GWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRS 306 (390)
T ss_dssp CEEEEECTTTGGGCCCCSC-CTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred eEEEEECHHhHhhcCCccc-cCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999877522100000 000 001112234566666655555541111 23688899999999
Q ss_pred HHHHHHHHhC-CCeeeCC--CCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHH
Q 013521 359 KIIVDAFQSL-GLKVNGG--KNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISE 432 (441)
Q Consensus 359 ~~l~~~L~~~-g~~~~~~--~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~ 432 (441)
+.+.+.|+++ |+++..+ ..+.+++++++ +.+..++.+.|. ++||.+.||. +++++||++ ..+++++++
T Consensus 307 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~-----~~~~iRis~~~~~~~~~i~~ 380 (390)
T 1elu_A 307 EFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLE-EQRIYLRTIA-----DPDCIRACCHYITDEEEINH 380 (390)
T ss_dssp HHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHH-HTTEECEEET-----TTTEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHHH-HCCEEEEecC-----CCCeEEEecccCCCHHHHHH
Confidence 9999999987 8887642 34666666886 445667777775 5599999975 357999997 368999999
Q ss_pred HHHHHHhh
Q 013521 433 ACRRLKNF 440 (441)
Q Consensus 433 ~l~~l~~~ 440 (441)
++++|+++
T Consensus 381 ~~~~l~~~ 388 (390)
T 1elu_A 381 LLARLADF 388 (390)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhh
Confidence 99999875
No 96
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=4e-33 Score=270.90 Aligned_cols=331 Identities=15% Similarity=0.155 Sum_probs=233.6
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++||+.+.+ ++. +++.+.+++.+.+.... .....| +..+..++++++++++ ++ +++|++|+|++++
T Consensus 27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~--~~~~~y-~~~~~~~l~~~la~~~----g~-~~~v~~~~g~t~a 98 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLL--HVSNLY-ENPWQEELAHKLVKHF----WT-EGKVFFANSGTES 98 (375)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCS--CCCTTB-CCHHHHHHHHHHHHTS----SS-CEEEEEESSHHHH
T ss_pred CCEEEEcCCcccccccCCCCHHHHHHHHHHHHhcc--ccCccc-CCHHHHHHHHHHHhhc----CC-CCeEEEeCchHHH
Confidence 346889998864 455 78999999999887642 222357 4567889999999985 66 4899999999999
Q ss_pred HHH-HHH---hc---CCC-CEEEEeCCCchhhHhHHHHhccccc----cccccCccceeEEeecCCCCCccCCCCCCCCc
Q 013521 148 ISR-LQM---LL---GSN-VTVAVQDPSFPAYIDTSVIVGQAGK----FLKETGKYRNIVYMNCRPENNFFPDLSTTSRT 215 (441)
Q Consensus 148 l~~-l~~---l~---~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~----~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~ 215 (441)
+.+ +.. +. ++| |+|++++|+|+++...+...+.... +.+.. .++..++..+-+.+...+ .+++
T Consensus 99 ~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~l~~~l--~~~~ 173 (375)
T 2eh6_A 99 VEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLV---PGFSYAKLNDIDSVYKLL--DEET 173 (375)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCC---SSEEEECTTCHHHHHTTC--CTTE
T ss_pred HHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCC---CCceeCCCchHHHHHHHh--cCCe
Confidence 997 432 35 788 9999999999998766655543211 00000 024444432111111111 2578
Q ss_pred cEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccce
Q 013521 216 DIIFFCSPNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
++|++++|+||||.++ +.+++++|+++|++||+++|+||+|.+|...+.+.++..+...++ ++ ||||.++ +|+|
T Consensus 174 ~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d--~~--s~SK~~~-~g~~ 248 (375)
T 2eh6_A 174 AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPD--VI--ALAKGLG-GGVP 248 (375)
T ss_dssp EEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS--EE--EECGGGG-TTSC
T ss_pred EEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCC--EE--EEccccc-CCCC
Confidence 9999989999999994 688999999999999999999999997655432233333321123 22 8899998 8999
Q ss_pred eEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 374 (441)
+||++++++++ +.+.........+++.+.+.++.++++. .++.+++++++++.+.+.|++++....+
T Consensus 249 ~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 315 (375)
T 2eh6_A 249 IGAILAREEVA--------QSFTPGSHGSTFGGNPLACRAGTVVVDE-----VEKLLPHVREVGNYFKEKLKELGKGKVK 315 (375)
T ss_dssp CEEEEEEHHHH--------TTCCTTSCCCSSTTCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTSSEEE
T ss_pred eEEEEEcHHHH--------hhhcCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 99999998763 2222111122334678888877777652 1267788889999999999887543333
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 375 GKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
..|+++|++++. +..++.+.+++ +||.+.|+ +++++||++ ..+++++++++++|++++
T Consensus 316 -~~g~~~~~~~~~-~~~~~~~~l~~-~gi~~~~~------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 316 -GRGLMLGLELER-ECKDYVLKALE-KGLLINCT------AGKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp -EETTEEEEECSS-CCHHHHHHHHH-TTEECEEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred -EEEEEEEEEEcC-cHHHHHHHHHH-CCCEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 468899999974 45677777775 59999985 257899996 458999999999999875
No 97
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=100.00 E-value=2.5e-34 Score=278.86 Aligned_cols=325 Identities=14% Similarity=0.111 Sum_probs=230.1
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccC--C--CCCCCCCCCcCcHHHHHH-HHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALST--V--KGYKGYGAEQGNMALRTA-IADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~--~--~~~~~Y~~~~g~~~lr~~-ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
+++++|+.|.+..++++.+.+++.+.+..... . .....|.+..+..+++++ +++++ +.+ +|++|+|+++
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~----~~~--~v~~~~g~t~ 80 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL----GCD--VARVTNGARE 80 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT----TSS--EEEEESSHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHc----CCC--EEEEeCChHH
Confidence 46889988776667889999999987754210 0 012245567899999999 99996 555 9999999999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEee--cCCCCCccCC-CCC--C-----CCc
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMN--CRPENNFFPD-LST--T-----SRT 215 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~--~~~~~~~~~~-~~~--~-----~~~ 215 (441)
++.+ +..++++||+|++++|+|+++...+...| .+++.++ .+++..++++ +++ . +++
T Consensus 81 a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 148 (371)
T 2e7j_A 81 AKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAG------------LNIALVPKTDYPDYAITPENFAQTIEETKKRGEV 148 (371)
T ss_dssp HHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTT------------CEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCE
T ss_pred HHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcC------------CeEEEeecccCCCCCcCHHHHHHHHHhhcccCCe
Confidence 9997 67778999999999999999999888888 5888888 6543332221 111 1 578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+++++++|+||||.+++ +++|+++|++||+++|+||+|+.+.. +.++..+ +..+++.|+||+++ ++.|+
T Consensus 149 ~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~---~~~~~~~----~~di~~~s~sK~~~-~~~~~ 217 (371)
T 2e7j_A 149 VLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM---PVSLKEI----GADFIVGSGHKSMA-ASGPI 217 (371)
T ss_dssp EEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB---CCCHHHH----TCSEEEEEHHHHSS-CCSSC
T ss_pred EEEEEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCC---CCChhhc----CCCEEEecCCcCCC-CCCCc
Confidence 99999999999999999 68999999999999999999997543 2233333 23499999999997 55699
Q ss_pred EEEEeeccccccCCchhHHHHHHHHh--hh-----cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHH--HHHHHHHHHHHH
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIVC--TC-----FNGASNIVQAGGLACLSPDGFQALRTVIDYY--KENAKIIVDAFQ 366 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~--~~~~~~l~~~L~ 366 (441)
||++++++++... +..... .. ..+.+...+.++.+.++. ... +.++++ +++++++.+.|+
T Consensus 218 G~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~~~--~~~~~~~~~~~~~~l~~~L~ 286 (371)
T 2e7j_A 218 GVMGMKEEWAEIV-------LRRSEKYKNKEVELLGCTARGATIITLMASFPH--VRE--RIKRWDEEVEKARRFAAEME 286 (371)
T ss_dssp EEEEECTTTTTTT-------TCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH--HHH--HGGGHHHHHHHHHHHHHHHH
T ss_pred EEEEEechhhhhh-------ccccccCcccccccccCCcCHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHH
Confidence 9999998874210 111111 01 223444444444444431 111 566777 888899999998
Q ss_pred hCCCeeeCCC--CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCC----CCCCeEE-EEee---cCHHHHHHHHHH
Q 013521 367 SLGLKVNGGK--NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGP----GGNEHIR-VSAF---GHREYISEACRR 436 (441)
Q Consensus 367 ~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~~~iR-ls~~---~~~~~~~~~l~~ 436 (441)
++|+++..+. .+.++|++++ +..++.+.+. ++||.+.| ..|.. ..++++| +++. .+++++++++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~ 362 (371)
T 2e7j_A 287 KLGIKQLGDNPHNHDLMFFHAE--VLYEISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNA 362 (371)
T ss_dssp HTTCEEESSSSCCSSEEEEECH--HHHHHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHH
T ss_pred HcCcEEecCCCccCceEEEECC--CHHHHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHH
Confidence 8888887654 4778999987 4456666655 66999988 44432 1267899 9986 689999999999
Q ss_pred HHhh
Q 013521 437 LKNF 440 (441)
Q Consensus 437 l~~~ 440 (441)
|+++
T Consensus 363 l~~~ 366 (371)
T 2e7j_A 363 FKEI 366 (371)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 98
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=100.00 E-value=1.8e-32 Score=266.80 Aligned_cols=331 Identities=12% Similarity=0.058 Sum_probs=231.3
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC----CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 76 RLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA----EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 76 ~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
.|+.+.+. ++|+.+.+++.+.+..... .....|.. .....++++.+++++ ++++++|++|+|+++++.+
T Consensus 3 yld~~~~~-~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 3 YFDYTSAK-PVDERILEAMLPYMTESFG-NPSSVHSYGFKAREAVQEAREKVAKLV----NGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTCC-CCCHHHHHHHHHHHHTSCC-CTTCSSHHHHHHHHHHHHHHHHHHHHH----TCTTEEEEEESSHHHHHHHH
T ss_pred eeccCCCC-CCCHHHHHHHHHHHHhccC-CCCCCcHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEcCchHHHHHHH
Confidence 34444443 6789999999998875321 11112422 235677888888876 7788899999999999997
Q ss_pred HHHhc----CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCC
Q 013521 151 LQMLL----GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSP 223 (441)
Q Consensus 151 l~~l~----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p 223 (441)
+..+. ++||+|++++|+|+++...+..+...| .+++.++++.++.++++ +++ .+++++|++++|
T Consensus 77 ~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~ 147 (382)
T 4eb5_A 77 IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQG---------FEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHA 147 (382)
T ss_dssp HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTT---------CEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSB
T ss_pred HHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCC---------cEEEEeccCCCCccCHHHHHHHhcCCCeEEEEecc
Confidence 56666 899999999999999877776542222 48888988754322221 211 357899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
+||||.+++ +++|+++|++||++ |+|++|+. ...+..+... +.++++.|+||.+|.+| +||++++++
T Consensus 148 ~nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~~---g~~~~~~~~~----~~di~~~s~sK~~g~~g--~G~~~~~~~ 214 (382)
T 4eb5_A 148 NNEIGTIQP---VEEISEVLAGKAAL-HIDATASV---GQIEVDVEKI----GADMLTISSNDIYGPKG--VGALWIRKE 214 (382)
T ss_dssp CTTTCBBCC---HHHHHHHHTTSSEE-EEECTTTB---TTBCCCHHHH----TCSEEEEETGGGTCCSS--CEEEEEETT
T ss_pred CCCccccCC---HHHHHHHHHHCCCE-EEEcchhc---CCcccCcccc----CCCEEEeehHHhcCCCc--eEEEEEccc
Confidence 999999999 78999999999999 99999982 1112223222 34589999999987556 799999887
Q ss_pred c-cccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCC---c
Q 013521 304 L-RYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKN---A 378 (441)
Q Consensus 304 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~---~ 378 (441)
. +.... ............+.+...+.++.++++. ..+++++++++++++++.+.+.|+++ ++++..+.+ +
T Consensus 215 ~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 289 (382)
T 4eb5_A 215 AKLQPVI----LGGGQENGLRSGSENVPSIVGFGKAAEI-TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLP 289 (382)
T ss_dssp CCCCCSS----CSSCTGGGTSCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCT
T ss_pred cccCcee----cCCCccccccCCCccHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCC
Confidence 4 21100 0000001122233555555555555541 11356888899999999999999987 787765432 5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCC-----------------CCCeEEEEee--cCHHHHHHHHHHHHh
Q 013521 379 PYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPG-----------------GNEHIRVSAF--GHREYISEACRRLKN 439 (441)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~-----------------~~~~iRls~~--~~~~~~~~~l~~l~~ 439 (441)
.++|+.+++.+..++.+.+.+ +||.+.+|..|.+. +++++||++. .+++++++++++|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 368 (382)
T 4eb5_A 290 NNVNVRFSYIEGESIVLSLDM-AGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPG 368 (382)
T ss_dssp TEEEEEETTSCHHHHHHHHHH-HTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcCHHHHHHHHHH-CCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 678888876566777777664 59999999876532 2579999986 489999999999987
Q ss_pred h
Q 013521 440 F 440 (441)
Q Consensus 440 ~ 440 (441)
+
T Consensus 369 ~ 369 (382)
T 4eb5_A 369 V 369 (382)
T ss_dssp H
T ss_pred H
Confidence 5
No 99
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.5e-32 Score=266.78 Aligned_cols=317 Identities=12% Similarity=0.053 Sum_probs=231.2
Q ss_pred CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCC-----
Q 013521 84 QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGS----- 157 (441)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~----- 157 (441)
.++++.+.+++.+.+... ..+|....+..++++++++++.+.+++++++|++|+|+++++.+ +..+..+
T Consensus 40 ~~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~ 114 (397)
T 3f9t_A 40 SNVLPITRKIVDIFLETN-----LGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKR 114 (397)
T ss_dssp CCCCTHHHHHHHHHTTCC-----TTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhhc-----CCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhh
Confidence 345678888998877532 11222223566777777777776678899999999999999987 5555554
Q ss_pred --------CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CC-CccEEEEcCCCC
Q 013521 158 --------NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TS-RTDIIFFCSPNN 225 (441)
Q Consensus 158 --------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~-~~~~v~i~~p~N 225 (441)
||+|+++.|+|+++...+...| .+++.++.+++..++++ +++ .+ +++++++++|+|
T Consensus 115 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 182 (397)
T 3f9t_A 115 RKGLSKNEHPKIIVPITAHFSFEKGREMMD------------LEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTT 182 (397)
T ss_dssp HTTCCCCSSCEEEEETTCCTHHHHHHHHHT------------CEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCT
T ss_pred hhcccCCCCeEEEECCcchhHHHHHHHHcC------------ceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCC
Confidence 9999999999999999999998 58999998764332222 211 23 789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC--c------ccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR--S------IYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~--~------~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
|||.+.+ +++|+++|++||+++|+||+|+.+..+.... + ...+. . +..+++.|++|.++ +|+|+||
T Consensus 183 ptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~s~~K~~~-~~~~~g~ 256 (397)
T 3f9t_A 183 ELGTIDN---IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS-L-GVDSITIDPHKMGH-CPIPSGG 256 (397)
T ss_dssp TTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGG-G-TCSEEECCTTTTTC-CCSSCEE
T ss_pred CCCCCCC---HHHHHHHHHHhCCeEEEEccccchhhhhccccccccccccccccc-c-cCCeEEEccccccC-CCCCceE
Confidence 9999998 8889999999999999999998754421110 0 11111 1 34588999999885 8889999
Q ss_pred EEeeccccccCCchhHHHHHHHHhh-----------hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 013521 298 TVVPEELRYSNGYPVIKDFNRIVCT-----------CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
++++++.+. +.+...... ...+.+.+.+.++.+.+. ..++++..++++++++++.+.|+
T Consensus 257 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~ 326 (397)
T 3f9t_A 257 ILFKDIGYK-------RYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG---REGQRKIVNECMENTLYLYKKLK 326 (397)
T ss_dssp EEESSGGGG-------GGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCHHHH-------HhhccCCccccCCCccccccccccchHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876541 111100000 111235566666666653 34557788888899999999999
Q ss_pred hCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 367 SLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
++|+.+..++.++++|+.++. ..++.+.+.++ ||.+.++.. ++++||++. .+++++++++++|++++
T Consensus 327 ~~g~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~-gi~v~~~~~-----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l 395 (397)
T 3f9t_A 327 ENNFKPVIEPILNIVAIEDED--YKEVCKKLRDR-GIYVSVCNC-----VKALRIVVMPHIKREHIDNFIEILNSIK 395 (397)
T ss_dssp HTTCCBSSCCSSSEEEEECTT--HHHHHHHHHHT-TCBCEECSS-----SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HCCCEEEcCCCccEEEEEeCC--HHHHHHHHHhC-CeEEeccCC-----CCEEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 888886666678889998874 56677776665 999999763 579999985 48999999999999875
No 100
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8.9e-32 Score=264.24 Aligned_cols=327 Identities=15% Similarity=0.145 Sum_probs=234.7
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC----CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG----AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDI 148 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~----~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al 148 (441)
+.+.|+.+.++ ++|+.+.+++.+.+..... .....|. ...+..++|+++++++ ++++++|++|+|+++++
T Consensus 26 ~~~~ld~~~~~-~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAGM-LIPDSVATTVSTAFRRSGA-STVGAHPSARRSAAVLDAAREAVADLV----NADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGCC-CCCHHHHHHHHHHHHHCCS-SSCSSSHHHHHHHHHHHHHHHHHHHHH----TCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCcC-CCCHHHHHHHHHHHHhcCC-CCCCccHHHHHHHHHHHHHHHHHHHHh----CCCCCeEEEeCChHHHH
Confidence 47888888776 6788999999998875321 1112232 2356788999999987 77889999999999999
Q ss_pred HHH-HHh---cCCCCEEEEeCCCchhhHhHHHH----hccccccccccCccceeEEeecCCCCCccCCCCC-----CCCc
Q 013521 149 SRL-QML---LGSNVTVAVQDPSFPAYIDTSVI----VGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRT 215 (441)
Q Consensus 149 ~~l-~~l---~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~ 215 (441)
.++ ..+ +++||+|+++.|+|+++...+.. .| .+++.++.+++++ ..+++. .+++
T Consensus 100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g------------~~v~~v~~~~~~~-~~d~~~l~~~l~~~~ 166 (406)
T 3cai_A 100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYG------------AKVKWAEVDIETG-ELPTWQWESLISKST 166 (406)
T ss_dssp HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHB------------CEEEEECCCTTTC-CCCGGGHHHHCCTTE
T ss_pred HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcC------------CeEEEEecCcccC-CcCHHHHHHHhCCCc
Confidence 984 555 68999999999999987666554 46 5888898873222 233332 3578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
++|++++|+||||.+++ +++|.++|+++|+++|+|++|+... .+..+..+ +.++++.|+||.+| ++ +
T Consensus 167 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~---~~~~~~~~----~~d~~~~s~~K~~g-~~--~ 233 (406)
T 3cai_A 167 RLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPY---RLLDIRET----DADVVTVNAHAWGG-PP--I 233 (406)
T ss_dssp EEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTT---CCCCHHHH----CCSEEEEEGGGGTS-CS--C
T ss_pred eEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCC---CCCCchhc----CCCEEEeehhhhcC-CC--c
Confidence 99999999999999999 7899999999999999999998321 12223222 34589999999886 65 9
Q ss_pred E-EEEeeccccccCCchhHHHHHHHH---------hhhcCCCcHHHHHHHHHhcC---CCc----------H-HHHHHHH
Q 013521 296 G-WTVVPEELRYSNGYPVIKDFNRIV---------CTCFNGASNIVQAGGLACLS---PDG----------F-QALRTVI 351 (441)
Q Consensus 296 G-~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~~l~---~~~----------~-~~~~~~~ 351 (441)
| |++++++++ +.+.... .....+.+...+.++.++++ +.+ + .++++++
T Consensus 234 G~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~ 305 (406)
T 3cai_A 234 GAMVFRDPSVM--------NSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSAD 305 (406)
T ss_dssp EEEEESCHHHH--------HTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHH
T ss_pred CeEEEEehHHH--------hhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Confidence 9 999988763 1111110 11123345555444434443 211 1 1568889
Q ss_pred HHHHHHHHHHHHHHHhC-CCeeeCCC--CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCC------CcCCC-CCCeEEE
Q 013521 352 DYYKENAKIIVDAFQSL-GLKVNGGK--NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGS------GFGPG-GNEHIRV 421 (441)
Q Consensus 352 ~~~~~~~~~l~~~L~~~-g~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~------~f~~~-~~~~iRl 421 (441)
++++++++++.+.|+++ ++++..+. .+.++++.+++.+..++.+.|.+ +||.+.+|+ .|+.. +.+++||
T Consensus 306 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gi~v~~g~~~~~~~~~g~~~~~~~iRi 384 (406)
T 3cai_A 306 AYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLAD-NGILAIANTGSRVLDVLGVNDVGGAVTV 384 (406)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHHH-TTEECEECCSCHHHHHHTTTTTTCCEEE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHHH-CCcEEecCChHHHHHHcCCCCCCCeEEE
Confidence 99999999999999987 78776543 24478888876566677777654 699999987 34322 3578999
Q ss_pred Eeec--CHHHHHHHHHHHHhh
Q 013521 422 SAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 422 s~~~--~~~~~~~~l~~l~~~ 440 (441)
++.. +++++++++++|+++
T Consensus 385 s~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 385 GLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp ECCTTCCHHHHHHHHHHHHTC
T ss_pred EeecCCCHHHHHHHHHHHHHh
Confidence 9854 789999999999875
No 101
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=100.00 E-value=1.4e-32 Score=268.94 Aligned_cols=316 Identities=14% Similarity=0.134 Sum_probs=230.1
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCC--cCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHHHHHH-HHH
Q 013521 78 GIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAE--QGNMALRTAIADKFYKDMGIEGD-EIFISDGAQSDISR-LQM 153 (441)
Q Consensus 78 ~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~al~~-l~~ 153 (441)
..+.++.++++.+.+++.+.+. .+|.+. ....++|+++|+++ +.+++ +|++|+|+++++.+ +..
T Consensus 21 ~~~~~p~~~~~~v~~a~~~~~~--------~~~~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~g~t~al~~~~~~ 88 (396)
T 2ch1_A 21 MMGPGPSNCSKRVLTAMTNTVL--------SNFHAELFRTMDEVKDGLRYIF----QTENRATMCVSGSAHAGMEAMLSN 88 (396)
T ss_dssp CCSSSSCCCCHHHHHHTTSCCC--------CTTCHHHHHHHHHHHHHHHHHH----TCCCSCEEEESSCHHHHHHHHHHH
T ss_pred eecCCCCCCCHHHHHHhccccc--------cCCChhHHHHHHHHHHHHHHHh----CCCCCcEEEECCcHHHHHHHHHHH
Confidence 3444455677887777765331 134332 24789999999997 77777 89999999999998 567
Q ss_pred hcCCCCEEEEeCCCchhhH--hHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC-CccEEEEcCCCC
Q 013521 154 LLGSNVTVAVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS-RTDIIFFCSPNN 225 (441)
Q Consensus 154 l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~-~~~~v~i~~p~N 225 (441)
++++||+|++++|+|+++. ..++..| .+++.++.+.+ +..+++. .+ ++++|++++|+|
T Consensus 89 ~~~~gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~~v~~~~~~n 154 (396)
T 2ch1_A 89 LLEEGDRVLIAVNGIWAERAVEMSERYG------------ADVRTIEGPPD--RPFSLETLARAIELHQPKCLFLTHGDS 154 (396)
T ss_dssp HCCTTCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTT--SCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred hcCCCCeEEEEcCCcccHHHHHHHHHcC------------CceEEecCCCC--CCCCHHHHHHHHHhCCCCEEEEECCCC
Confidence 7899999999999999984 3566677 58888888653 2333322 13 789999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccc
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~ 305 (441)
|||.+++ +++|+++|++||++||+||+|. +. ..+..+..+ +..+++.|++|.++ ++.++||++++++.+
T Consensus 155 ptG~~~~---~~~i~~l~~~~~~~li~Dea~~-~g--~~~~~~~~~----~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~ 223 (396)
T 2ch1_A 155 SSGLLQP---LEGVGQICHQHDCLLIVDAVAS-LC--GVPFYMDKW----EIDAVYTGAQKVLG-APPGITPISISPKAL 223 (396)
T ss_dssp TTTEECC---CTTHHHHHHHTTCEEEEECTTT-BT--TBCCCTTTT----TCCEEECCCC-CCC-CCSSCEEEEECHHHH
T ss_pred CCceecC---HHHHHHHHHHcCCEEEEEcccc-cc--CCccchhhc----CcCEEEEcCCcccc-CCCCeEEEEECHHHH
Confidence 9999999 8899999999999999999998 22 112222222 22477899999875 556679999987663
Q ss_pred ccCCchhHHHHHH-----------------HH------hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 013521 306 YSNGYPVIKDFNR-----------------IV------CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV 362 (441)
Q Consensus 306 ~~~~~~~~~~~~~-----------------~~------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 362 (441)
+.+.. .. .....+.+...|.++.++++.....++++++++++++++.+.
T Consensus 224 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 295 (396)
T 2ch1_A 224 --------DVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILY 295 (396)
T ss_dssp --------HHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred --------HhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22211 00 112234677778777777763222456788999999999999
Q ss_pred HHHHhCCCeeeCCCC----ceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe-e--cCHHHHHHHH
Q 013521 363 DAFQSLGLKVNGGKN----APYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA-F--GHREYISEAC 434 (441)
Q Consensus 363 ~~L~~~g~~~~~~~~----~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~-~--~~~~~~~~~l 434 (441)
+.|+++|+++..+.+ +.++|++++ +.+..++.+.|++++||.+.+|..+. .++++||++ . .+++++++++
T Consensus 296 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~e~i~~~~ 373 (396)
T 2ch1_A 296 EGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPT--FGKAWRVGIMGECSTVQKIQFYL 373 (396)
T ss_dssp HHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGG--TTTEEEEECCGGGCSHHHHHHHH
T ss_pred HHHHHCCCeeccCCccccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccc--CCCEEEEECCCCcCCHHHHHHHH
Confidence 999988888776543 248899986 55677788888776799999987542 467999998 3 2789999999
Q ss_pred HHHHhh
Q 013521 435 RRLKNF 440 (441)
Q Consensus 435 ~~l~~~ 440 (441)
++|+++
T Consensus 374 ~~l~~~ 379 (396)
T 2ch1_A 374 YGFKES 379 (396)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 102
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=100.00 E-value=1e-32 Score=268.58 Aligned_cols=313 Identities=13% Similarity=0.101 Sum_probs=222.8
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC--CcEEEcCCcHHHHHHHHHhcCCCCE
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG--DEIFISDGAQSDISRLQMLLGSNVT 160 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~--~~I~~t~G~~~al~~l~~l~~~gd~ 160 (441)
+.++++.+.+++.+.+.. . ..+.......++++.+++++ ++++ ++|++|+|+++++.++..++++||+
T Consensus 10 p~~~~~~v~~a~~~~~~~-----~-~~~~~~~~~~~~~~~la~~~----~~~~~~~~v~~~~g~t~al~~~~~~~~~gd~ 79 (384)
T 3zrp_A 10 PTTIKEDVLVAGLENNVG-----F-TSKEFVEALAYSLKGLRYVM----GASKNYQPLIIPGGGTSAMESVTSLLKPNDK 79 (384)
T ss_dssp CSCCCHHHHHHTTCCSCC-----T-TSHHHHHHHHHHHHHHHHHH----TCCTTSEEEEEESCHHHHHHHGGGGCCTTCE
T ss_pred CCCCCHHHHHHhhccccc-----c-ccHHHHHHHHHHHHHHHHHh----CCCCCCcEEEEcCCcHHHHHHHHhhcCCCCE
Confidence 456778887777664321 1 11111335566777777775 7776 8999999999999954667899999
Q ss_pred EEEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC---CCCccEEEEcCCCCccccCCCHH
Q 013521 161 VAVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST---TSRTDIIFFCSPNNPTGHAATWQ 234 (441)
Q Consensus 161 Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~---~~~~~~v~i~~p~NPtG~~~~~~ 234 (441)
|++++|+|++ +...+...| .+++.++.+.++.++++ +++ ..++++|++++|+||||.+++
T Consensus 80 vi~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-- 145 (384)
T 3zrp_A 80 ILVVSNGVFGDRWEQIFKRYP------------VNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP-- 145 (384)
T ss_dssp EEEECSSHHHHHHHHHHTTSS------------CEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC--
T ss_pred EEEecCCcchHHHHHHHHHcC------------CcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc--
Confidence 9999999976 444455556 58899998764333222 211 137999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHH
Q 013521 235 QLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIK 314 (441)
Q Consensus 235 ~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~ 314 (441)
+++|.++|++||+++|+|++|+.... +..+.. .+.++++.|+||+++ ++.++||++++++++ +
T Consensus 146 -l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~--------~ 208 (384)
T 3zrp_A 146 -VKDVINKIRKYVELIVVDGVSSVGAE---EVKAEE----WNVDVYLTASQKALG-SAAGLGLLLLSPKAL--------S 208 (384)
T ss_dssp -HHHHHHHHGGGEEEEEEECTTTTTTS---CCCTTT----TTCSEEEEETTSTTC-CCSSEEEEEECHHHH--------H
T ss_pred -HHHHHHHHHhcCCEEEEECcccccCc---cccccc----cCCCEEEecCccccc-CCCceEEEEECHHHH--------H
Confidence 88899999999999999999874221 122211 234699999999885 456699999998874 2
Q ss_pred HH-------------HHHHh---------hh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013521 315 DF-------------NRIVC---------TC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLK 371 (441)
Q Consensus 315 ~~-------------~~~~~---------~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 371 (441)
.+ ..... .. +.+.+...+.++.+++.......+++++++++++++++.+.|+++|++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 288 (384)
T 3zrp_A 209 ILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLE 288 (384)
T ss_dssp HHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 22 11111 01 124455555555555542111236888999999999999999988888
Q ss_pred eeCCC----CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 372 VNGGK----NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 372 ~~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+..+. .++++|+.+++.+..++.+.+.++ ||.+.+|..+.. +++||++. .+++++++++++|+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~~---~~iRi~~~~~~~~e~i~~~~~~l~~~ 359 (384)
T 3zrp_A 289 IVARRPESYSNTVTGVILKVADPQKVLAGTVNE-GVEFAPGVHPAF---KYFRIGHMGWVTPNDAIIAISVIERT 359 (384)
T ss_dssp BSCSSGGGBCSSEEEEECSSSCHHHHHHHHHTT-TCCCEECCCTTC---CEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred EccCcccccCccEEEEECCCCCHHHHHHHHHHC-CEEEecCCCCCc---CEEEEeccccCCHHHHHHHHHHHHHH
Confidence 77655 477889999875667777777665 999999874322 89999974 5899999999999875
No 103
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=3.9e-32 Score=267.19 Aligned_cols=330 Identities=14% Similarity=0.083 Sum_probs=234.9
Q ss_pred CCCeEEeCCCCC-CCCCcHHHHHHHHHHHhhccCCC--CCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT-TQPIPDIITSAMAEHAFALSTVK--GYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~-~~~~~~~~~~al~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++||+.+++ +++.++.+.+++.+.+.++.... ....|+......++++.+++++ +.+ +.|++++| +++
T Consensus 58 g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~~-~~i~~~sG-t~a 131 (409)
T 3kki_A 58 SPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT----GFD-ECLLSQSG-WNA 131 (409)
T ss_dssp CTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH----TCS-EEEEESCH-HHH
T ss_pred CCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh----CCC-eEEEecch-HHH
Confidence 456899998874 46678999999999998753211 1122333445678888888886 543 35666666 577
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC---CCCccEEEEcCC
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST---TSRTDIIFFCSP 223 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~---~~~~~~v~i~~p 223 (441)
+.. +..++++||.|+++.|+|+++...+...| .+++.++..+ ..++++ ..++++|++++|
T Consensus 132 ~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~d----~~~le~~l~~~~~~~vi~~~~ 195 (409)
T 3kki_A 132 NVGLLQTICQPNTNVYIDFFAHMSLWEGARYAN------------AQAHPFMHNN----CDHLRMLIQRHGPGIIVVDSI 195 (409)
T ss_dssp HHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTT------------CEEEEECTTC----HHHHHHHHHHHCSCEEEEESB
T ss_pred HHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcC------------CeEEEecCCC----HHHHHHHHHhcCCeEEEECCC
Confidence 775 77888999999999999999999888888 4777766421 111221 135789999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc-cccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI-YEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~-~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
+||||.+++ +++|+++|++||++||+||+|..+.++...... ...+..++.++++.||||.++.+ .||+++++
T Consensus 196 ~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~---gg~v~~~~ 269 (409)
T 3kki_A 196 YSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR---AGAIWCNN 269 (409)
T ss_dssp CTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS---CEEEEESS
T ss_pred CCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC---ceEEEECH
Confidence 999999999 889999999999999999999875443221122 22222234569999999999855 49999998
Q ss_pred cccccCCchhHHHHHHHH-hh-hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceE
Q 013521 303 ELRYSNGYPVIKDFNRIV-CT-CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPY 380 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 380 (441)
+++ +.+.... .. .....+.+.+.++.+.++. .+..++++++++++++++.+.|++.|+.+. ..+++
T Consensus 270 ~~~--------~~~~~~~~~~~~~~~~~~~~~aa~~aal~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~ 337 (409)
T 3kki_A 270 EVN--------RCVPFISYPAIFSSTLLPYEAAGLETTLEI--IESADNRRQHLDRMARKLRIGLSQLGLTIR--SESQI 337 (409)
T ss_dssp SGG--------GTHHHHCHHHHHSBCCCHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHTTTCCCC--CSSSE
T ss_pred HHH--------HHHHHhCcCccccCCCcHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHcCCccC--CCCCE
Confidence 874 2233211 11 1223455666666666642 222367888999999999999999887765 47889
Q ss_pred EEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCc-CCCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 381 VWVQFPGS-SSWDVFAEILEKTHILTIPGSGF-GPGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 381 ~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f-~~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
+|+.++.. ...++...|+++ ||.+.|+..+ .+.+.+++||++. .+++++++++++|++++
T Consensus 338 ~~~~~~~~~~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l 401 (409)
T 3kki_A 338 IGLETGDERNTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAV 401 (409)
T ss_dssp EEEEEESHHHHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 99998632 345577777766 9999986544 2445789999984 48999999999998763
No 104
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=100.00 E-value=3.3e-32 Score=266.00 Aligned_cols=321 Identities=10% Similarity=0.038 Sum_probs=226.7
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHH
Q 013521 75 IRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQM 153 (441)
Q Consensus 75 i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~ 153 (441)
+.|..+.+ .+.|+.+.+++.+.+.. ...|....+..++|+++++++ ++++++|++|+|+++++.+ +..
T Consensus 10 ~yl~~~~~-~~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~t~g~t~a~~~~~~~ 78 (392)
T 2z9v_A 10 VITLTAGP-VNAYPEVLRGLGRTVLY------DYDPAFQLLYEKVVDKAQKAM----RLSNKPVILHGEPVLGLEAAAAS 78 (392)
T ss_dssp SEECSSSC-CCCCHHHHHHTTSCCCC------TTSHHHHHHHHHHHHHHHHHT----TCSSCCEEESSCTHHHHHHHHHH
T ss_pred ceeecCCC-cCCCHHHHHHHhccccc------cccHHHHHHHHHHHHHHHHHh----CCCCCEEEEeCCchHHHHHHHHH
Confidence 45554433 46778888887765431 111222345778899999886 7778999999999999998 566
Q ss_pred hcCCCCEEEEeCCCchhhH--hHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC----CCCccEEEEcCCCCc
Q 013521 154 LLGSNVTVAVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST----TSRTDIIFFCSPNNP 226 (441)
Q Consensus 154 l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~----~~~~~~v~i~~p~NP 226 (441)
++++||+|++++|+|+++. ..+...| .+++.++.+.++.++++ +++ .+++++|++++|+||
T Consensus 79 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~np 146 (392)
T 2z9v_A 79 LISPDDVVLNLASGVYGKGFGYWAKRYS------------PHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTP 146 (392)
T ss_dssp HCCTTCCEEEEESSHHHHHHHHHHHHHC------------SCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGG
T ss_pred hcCCCCEEEEecCCcccHHHHHHHHHcC------------CceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCC
Confidence 7899999999999998863 3334456 48888888764322222 111 257899999999999
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
||.+++ +++|.++|++||++||+|++|+... .+..+..+ +.++++.|+||+++ ++.++||++++++++
T Consensus 147 tG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~---~~~~~~~~----~~d~~~~s~sK~~~-~~~g~G~l~~~~~~~- 214 (392)
T 2z9v_A 147 SGTINP---IDAIGALVSAHGAYLIVDAVSSFGG---MKTHPEDC----KADIYVTGPNKCLG-APPGLTMMGVSERAW- 214 (392)
T ss_dssp GTEECC---HHHHHHHHHHTTCEEEEECTTTBTT---BSCCGGGG----TCSEEEECSSSTTC-CCSCCEEEEECHHHH-
T ss_pred Cceecc---HHHHHHHHHHcCCeEEEEcccccCC---cccccccc----cceEEEecCccccc-CCCceeEEEECHHHH-
Confidence 999999 7899999999999999999998321 12223222 34589999999654 334469999988763
Q ss_pred cCCchhHHHHHHHH--------------------hhhcCCCcHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHHHHH
Q 013521 307 SNGYPVIKDFNRIV--------------------CTCFNGASNIVQAGGLACLSPDGFQA-LRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 307 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~L 365 (441)
+.+.... .....+.+...+.++.++++. ..++ +++++++++++++++.+.|
T Consensus 215 -------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~g~~~~~~~~~~~~~~l~~~L 286 (392)
T 2z9v_A 215 -------AKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL-YLNEGPEAVWARHALTAKAMRAGV 286 (392)
T ss_dssp -------HHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHH
Confidence 3332110 011223455555555555542 1123 5788899999999999999
Q ss_pred HhCCCeeeCCC----CceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe-e--cCHHHHHHHHHHH
Q 013521 366 QSLGLKVNGGK----NAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA-F--GHREYISEACRRL 437 (441)
Q Consensus 366 ~~~g~~~~~~~----~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~-~--~~~~~~~~~l~~l 437 (441)
+++|+++..++ .++++|+.++ +.+..++.+.|.+++||.+.||..|. .++++||++ . .+++++++++++|
T Consensus 287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~--~~~~lRi~~~~~~~~~~~i~~~~~~l 364 (392)
T 2z9v_A 287 TAMGLSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGET--LGKLTRIGHMGPTAQPIYAIAALTAL 364 (392)
T ss_dssp HHTTCCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred HHcCCeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCC--CCCeEEEeCcccccCHHHHHHHHHHH
Confidence 88888776523 4678999996 45667777777765699999998643 467999995 4 5899999999999
Q ss_pred Hhh
Q 013521 438 KNF 440 (441)
Q Consensus 438 ~~~ 440 (441)
+++
T Consensus 365 ~~~ 367 (392)
T 2z9v_A 365 GGA 367 (392)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 105
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=100.00 E-value=8.1e-32 Score=259.82 Aligned_cols=324 Identities=11% Similarity=0.075 Sum_probs=231.7
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
+.+++|+.+.++ ++++.+.+++.+.+. +|.+..|..++++++++++.+.++.++++|++|+|+++++.+
T Consensus 13 p~~i~l~~~~~~-~~~~~v~~a~~~~~~---------~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~ 82 (359)
T 1svv_A 13 PKPYSFVNDYSV-GMHPKILDLMARDNM---------TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIA 82 (359)
T ss_dssp --CEECSCSCSS-CCCHHHHHHHHHHTT---------CCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHH
T ss_pred CeeEEecCCCcC-CCCHHHHHHHHHHHh---------hccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHH
Confidence 358999987766 678899999998764 255556778888999988887667888999999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchhhHh--HHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC-------Ccc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYID--TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS-------RTD 216 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~-------~~~ 216 (441)
+..++++||+|++++|+|+++.. .+...| .+++.++.+ + +..+++. .+ +++
T Consensus 83 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~-~--~~~d~~~l~~~l~~~~~~~~~~~~ 147 (359)
T 1svv_A 83 CSLALRPWEAVIATQLGHISTHETGAIEATG------------HKVVTAPCP-D--GKLRVADIESALHENRSEHMVIPK 147 (359)
T ss_dssp HHHHCCTTEEEEEETTSHHHHSSTTHHHHTT------------CCEEEECCT-T--SCCCHHHHHHHHHHSCSTTSCEEE
T ss_pred HHHHhCCCCEEEEcccchHHHHHHHHHhcCC------------CeeEEEeCC-C--CeecHHHHHHHHHHHHhccCCCce
Confidence 66778999999999999999877 366677 588888875 2 2233221 12 389
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
+|++++| ||||.++|.+++++|+++|++||+++|+||+|..|.....+.....+.-.....+++.|++|..+ ..++|
T Consensus 148 ~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~--~~~~g 224 (359)
T 1svv_A 148 LVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG--MFGEA 224 (359)
T ss_dssp EEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC--SSCEE
T ss_pred EEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCC--CCceE
Confidence 9999999 79999999999999999999999999999999654332211111110000122378889999744 35689
Q ss_pred EEEeeccccccCCchhHHHHHHHHh-hhc-CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013521 297 WTVVPEELRYSNGYPVIKDFNRIVC-TCF-NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374 (441)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 374 (441)
+++++++++ +.+..... ... ...+.....++.+++.+. .+++++++++++++++.+.|+..|+++..
T Consensus 225 ~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 293 (359)
T 1svv_A 225 LIILNDALK--------PNARHLIKQRGALMAKGWLLGIQFEVLMKDN---LFFELGAHSNKMAAILKAGLEACGIRLAW 293 (359)
T ss_dssp EEECSGGGC--------TTHHHHHHHTTCCCTTTHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHHHTTCCBSS
T ss_pred EEEEcccHH--------HHHHHHHhcCCcccccchhhHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhccCCeEEcc
Confidence 999988774 22332211 111 111222233334556542 34778889999999999999545888876
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 375 GKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
+.+++|+|++++ .++.+++++++||.+.+. .+.+++++||++ ..+++++++++++|++++
T Consensus 294 ~~~~~~~~~~~~----~~~~~~l~~~~gi~v~~~---~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 355 (359)
T 1svv_A 294 PSASNQLFPILE----NTMIAELNNDFDMYTVEP---LKDGTCIMRLCTSWATEEKECHRFVEVLKRLV 355 (359)
T ss_dssp CCSSSEECBEEE----HHHHHHHTTTEECEEEEE---ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC-
T ss_pred CCccceEEEEcC----HHHHHHHHHhcCEEEEec---ccCCCceEEEEccCcCCHHHHHHHHHHHHHHH
Confidence 778899998875 467777776559998321 123467999986 358999999999998764
No 106
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=6.6e-32 Score=262.46 Aligned_cols=336 Identities=12% Similarity=0.051 Sum_probs=222.5
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh
Q 013521 76 RLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML 154 (441)
Q Consensus 76 ~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l 154 (441)
.|+.+.. .++|+.+.+++.+.+..... .....|....+..++.+.+.+++.+.+++++++|++|+|+++++.+ +..+
T Consensus 3 yld~~~~-~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~ 80 (382)
T 4hvk_A 3 YFDYTSA-KPVDERILEAMLPYMTESFG-NPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp BCBTTTC-CCCCHHHHHHHHHHHHTSCC-CTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHH
T ss_pred eecCCCc-CCCCHHHHHHHHHHHHhhcC-CCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHh
Confidence 3444433 35678999999998875321 1111121112223333334443333358888999999999999997 5666
Q ss_pred c----CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCcc
Q 013521 155 L----GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPT 227 (441)
Q Consensus 155 ~----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPt 227 (441)
+ ++||+|+++.|+|+++...+..++..| .+++.++.+.++.++++ +++ .++++++++++|+|||
T Consensus 81 ~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~npt 151 (382)
T 4hvk_A 81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQG---------FEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEI 151 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHHHHHHHTT---------CEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTT
T ss_pred hhhhcCCCCEEEECCCCcHHHHHHHHHHHhcC---------CEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCc
Confidence 6 899999999999999987776652222 48899998754333221 221 3678999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS 307 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~ 307 (441)
|.+++ +++|+++|++||+ +|+|++|+.... +..+... +.++++.|+||.+|.+| +|+++++++....
T Consensus 152 G~~~~---~~~i~~l~~~~~~-li~D~a~~~~~~---~~~~~~~----~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~ 218 (382)
T 4hvk_A 152 GTIQP---VEEISEVLAGKAA-LHIDATASVGQI---EVDVEKI----GADMLTISSNDIYGPKG--VGALWIRKEAKLQ 218 (382)
T ss_dssp CBBCC---HHHHHHHHSSSSE-EEEECTTTBTTB---CCCHHHH----TCSEEEEESGGGTSCTT--CEEEEEETTCCCC
T ss_pred eeeCC---HHHHHHHHHHcCE-EEEEhHHhcCCC---CCCchhc----CCCEEEEeHHHhcCCCc--eEEEEEcCccCcC
Confidence 99999 7789999999999 999999873211 2222222 34599999999887555 7787777654211
Q ss_pred CCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCC---ceEEEE
Q 013521 308 NGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKN---APYVWV 383 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~---~~~~~~ 383 (441)
.. .............+.+...+.++.+++. ...+++++.+++++++++.+.+.|+++ ++.+..++. +.++++
T Consensus 219 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~al~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 294 (382)
T 4hvk_A 219 PV---ILGGGQENGLRSGSENVPSIVGFGKAAE-ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNV 294 (382)
T ss_dssp CS---SCSSCTGGGTSCSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEE
T ss_pred cc---cccCCCcCccccCCcCHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEE
Confidence 00 0000000111223345566665555554 222567889999999999999999987 787765443 357888
Q ss_pred EcCCCChHHHHHHHHHhcCeEEeCCCCcCCCC-----------------CCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 384 QFPGSSSWDVFAEILEKTHILTIPGSGFGPGG-----------------NEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 384 ~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~-----------------~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
.+++.+..++.+.+.+ +||.+.+|..|.... +++|||++. .+++++++++++|+++
T Consensus 295 ~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~ 369 (382)
T 4hvk_A 295 RFSYIEGESIVLSLDM-AGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp EETTCCHHHHHHHHHH-TTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHH-CCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 8876666777766654 599999998876543 589999985 3789999999999875
No 107
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=100.00 E-value=3.2e-32 Score=266.13 Aligned_cols=318 Identities=12% Similarity=0.134 Sum_probs=228.5
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC--CCcCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG--AEQGNMALRTAIADKFYKDMGIEGD-EIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~al~ 149 (441)
..+++..|. .++|+.+.+++.+.+.. +|. +..+..++|+.+++++ +++++ +|++|+|+++++.
T Consensus 19 ~~~~~~~g~--~~~~~~v~~a~~~~~~~--------~~~~~~~~~~~~l~~~la~~~----g~~~~~~i~~~~g~t~a~~ 84 (393)
T 2huf_A 19 NKLLMGPGP--SNAPQRVLDAMSRPILG--------HLHPETLKIMDDIKEGVRYLF----QTNNIATFCLSASGHGGME 84 (393)
T ss_dssp CCEECSSSC--CCCCHHHHHHTTSCCCC--------TTSHHHHHHHHHHHHHHHHHH----TCCCSEEEEESSCHHHHHH
T ss_pred CeEEecCCC--CCCCHHHHHHHHhhhcc--------CCCHHHHHHHHHHHHHHHHHh----CCCCCcEEEEcCcHHHHHH
Confidence 457776663 56778888877764421 232 2356788888888886 77775 8999999999999
Q ss_pred H-HHHhcCCCCEEEEeCCCchhhH--hHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC-CccEEEE
Q 013521 150 R-LQMLLGSNVTVAVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS-RTDIIFF 220 (441)
Q Consensus 150 ~-l~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~-~~~~v~i 220 (441)
+ +..++++||+|++++|+|+++. ..++..| .+++.++.++++ ..+++. .+ ++++|++
T Consensus 85 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~--~~d~~~l~~~i~~~~~~~v~~ 150 (393)
T 2huf_A 85 ATLCNLLEDGDVILIGHTGHWGDRSADMATRYG------------ADVRVVKSKVGQ--SLSLDEIRDALLIHKPSVLFL 150 (393)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTC--CCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHhCCCCEEEEECCCcchHHHHHHHHHcC------------CeeEEEeCCCCC--CCCHHHHHHHHhccCCcEEEE
Confidence 8 6677899999999999998852 2334456 488888886543 233221 23 7899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCccc-CCccceeEEEE
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFA-GFTGVRLGWTV 299 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~-~~~G~r~G~l~ 299 (441)
++|+||||.+++ +++|+++|++||+++|+|+++... ..+..+.. .+.++++.|+||++ |.+|+ ||++
T Consensus 151 ~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~~~---~~~~~~~~----~~~d~~~~s~sK~l~g~~G~--G~~~ 218 (393)
T 2huf_A 151 TQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVASLG---GAPMFMDR----WEIDAMYTGSQKVLGAPPGI--TPVS 218 (393)
T ss_dssp ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTBT---TBCCCTTT----TTCSEEECCSSSTTCCCSSC--EEEE
T ss_pred EccCCCccccCC---HHHHHHHHHHcCCEEEEEcccccC---CCCcchhh----cCccEEEECCCcccccCCCe--EEEE
Confidence 999999999999 889999999999999999998631 11222211 24568999999974 55675 9999
Q ss_pred eeccccccCCchhHHHHHHHH----h-------------------hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013521 300 VPEELRYSNGYPVIKDFNRIV----C-------------------TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKE 356 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~----~-------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 356 (441)
++++++ +.+.... . ....+.+...+.++.++++......+++.++++++
T Consensus 219 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 290 (393)
T 2huf_A 219 FSHRAV--------ERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHED 290 (393)
T ss_dssp ECHHHH--------HHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ECHHHH--------HHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 987763 3333210 0 01123455666655556542111236778899999
Q ss_pred HHHHHHHHHHhCCCeeeCCC---CceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe-e--cCHHH
Q 013521 357 NAKIIVDAFQSLGLKVNGGK---NAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA-F--GHREY 429 (441)
Q Consensus 357 ~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~-~--~~~~~ 429 (441)
+++++.+.|+++|+++..+. .++++|++++ +.+..++.+.|++++||.+.+|..|. .++++||++ . .++++
T Consensus 291 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~--~~~~~Ri~~~~~~~~~e~ 368 (393)
T 2huf_A 291 CAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPT--AGQVFRIGLMGQNATTER 368 (393)
T ss_dssp HHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCSHHH
T ss_pred HHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccc--cCCEEEEEcccCcCCHHH
Confidence 99999999998888776543 3458889987 55667788888776799999998663 367999998 5 36888
Q ss_pred HHHHHHHHHhh
Q 013521 430 ISEACRRLKNF 440 (441)
Q Consensus 430 ~~~~l~~l~~~ 440 (441)
+++++++|+++
T Consensus 369 i~~~~~~l~~~ 379 (393)
T 2huf_A 369 VDRVLQVFQEA 379 (393)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 108
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=100.00 E-value=6.3e-32 Score=261.14 Aligned_cols=327 Identities=11% Similarity=0.090 Sum_probs=228.9
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC-C-cCcHHHHHHHHHHHhhhCCC--CCCcEEEcCCcHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA-E-QGNMALRTAIADKFYKDMGI--EGDEIFISDGAQSDI 148 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~-~-~g~~~lr~~ia~~l~~~~~~--~~~~I~~t~G~~~al 148 (441)
++++|+.| | .+.|+.+.+++.+.+ . +.|+. . .+..++|+++|+++ +. ++++|++|+|+++++
T Consensus 4 ~~~~~~~g-p-~~~~~~v~~a~~~~~------~--~~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~~~g~t~a~ 69 (366)
T 1m32_A 4 NYLLLTPG-P-LTTSRTVKEAMLFDS------C--TWDDDYNIGVVEQIRQQLTALA----TASEGYTSVLLQGSGSYAV 69 (366)
T ss_dssp -CEECSSS-S-CCCCHHHHHTTCCCC------C--TTSHHHHTTTHHHHHHHHHHHH----CSSSSEEEEEEESCHHHHH
T ss_pred ccccccCC-C-cCCCHHHHHHHhhhh------c--CCCHHHHHHHHHHHHHHHHHHh----CCCCcCcEEEEecChHHHH
Confidence 36889988 3 457788888876632 1 12211 1 68899999999997 42 235899999999999
Q ss_pred HH-HHHhcCCCCEEEEeC-CCchh-hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC----CCCccEEEE
Q 013521 149 SR-LQMLLGSNVTVAVQD-PSFPA-YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST----TSRTDIIFF 220 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~-p~y~~-~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~----~~~~~~v~i 220 (441)
.+ +..++++||+|++.+ ++|+. +...+...| .+++.++.+.+..++++ +++ ..++++|++
T Consensus 70 ~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~ 137 (366)
T 1m32_A 70 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMG------------IAHHAYDCGEVARPDVQAIDAILNADPTISHIAM 137 (366)
T ss_dssp HHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHT------------CCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhC------------CceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEE
Confidence 98 566778999988776 55554 556667777 57888888653222221 111 236889999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
++|+||||.+++ +++|+++|++||+++|+||+|+.... +.++.. .+.++++.|+||+++ ++.++||+++
T Consensus 138 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~---~~~~~~----~~~di~~~s~~K~~~-~~~g~G~~~~ 206 (366)
T 1m32_A 138 VHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGI---PMDIAA----LHIDYLISSANKCIQ-GVPGFAFVIA 206 (366)
T ss_dssp ESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTS---CCCTTT----TTCSEEEEESSSTTC-CCSSEEEEEE
T ss_pred ecccCCcceecC---HHHHHHHHHHcCCEEEEECCccccCc---Cccccc----cCccEEEecCccccc-CCCceEEEEE
Confidence 999999999999 78999999999999999999984322 222211 234699999999874 3456899999
Q ss_pred eccccccCCch-------hHHHHHHHHh--h-hcCCCcHHHHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHHHHHHhC
Q 013521 301 PEELRYSNGYP-------VIKDFNRIVC--T-CFNGASNIVQAGGLACLSPDGFQA--LRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 301 ~~~~~~~~~~~-------~~~~~~~~~~--~-~~~~~~~~~~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+++++..-... ....+..... . ...+.+.+.+.++.++++.. ..+ +++++++++++++++.+.|+++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~g~~~~~~~~~~~~~~~l~~~L~~~ 285 (366)
T 1m32_A 207 REQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKEL-AKEGGVAARHQRYQQNQRSLVAGMRAL 285 (366)
T ss_dssp EHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH-HHccCHhHHHHHHHHHHHHHHHHHHHC
Confidence 98875221000 0011111101 0 11346667776666666521 122 5778899999999999999988
Q ss_pred CCeeeCC---CCceEEEEEcC---CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 369 GLKVNGG---KNAPYVWVQFP---GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 369 g~~~~~~---~~~~~~~~~~~---~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
|+++..+ ..++++|+.++ +.+..++.+.+.++ ||.+.||..| +.+++|+++. .+++++++++++|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~~~---~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 361 (366)
T 1m32_A 286 GFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQ-GFVIYPGKVS---QSDCFRIGNIGEVYAADITALLTAIRTA 361 (366)
T ss_dssp TCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHT-TEECEECCCS---SSCEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCeeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHC-CEEEECCcCC---CCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 8776553 35679999997 34566777777765 9999999876 4679999985 3789999999999886
Q ss_pred C
Q 013521 441 L 441 (441)
Q Consensus 441 l 441 (441)
+
T Consensus 362 ~ 362 (366)
T 1m32_A 362 M 362 (366)
T ss_dssp C
T ss_pred H
Confidence 4
No 109
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=100.00 E-value=9.5e-32 Score=265.48 Aligned_cols=333 Identities=17% Similarity=0.148 Sum_probs=229.9
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHh--hccCCCCC--C--CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCC
Q 013521 70 PDARLIRLGIGDTTQPIPDIITSAMAEHAF--ALSTVKGY--K--GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDG 143 (441)
Q Consensus 70 ~~~~~i~l~~g~~~~~~~~~~~~al~~~~~--~~~~~~~~--~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G 143 (441)
.+++.+.|+.+.+. ++|+.+.+++.+.+. .....+.. . .|.......++++.+++++ ++++++|++|+|
T Consensus 19 ~~~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~~~~v~~~~g 93 (423)
T 3lvm_A 19 AMKLPIYLDYSATT-PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLV----GADPREIVFTSG 93 (423)
T ss_dssp -CCSSEECBTTTCC-CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHH----TCCGGGEEEESS
T ss_pred ccCCCEeecCCCcC-CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHc----CCCCCeEEEeCC
Confidence 45678999988775 678889999988765 21100000 0 0111234466777777765 788899999999
Q ss_pred cHHHHHH-HHHhc----CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCc
Q 013521 144 AQSDISR-LQMLL----GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRT 215 (441)
Q Consensus 144 ~~~al~~-l~~l~----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~ 215 (441)
+++++.+ +..+. ++||.|+++.|+|+++...+..++..| .+++.++.++++.++++ +++ .+++
T Consensus 94 gt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~~ 164 (423)
T 3lvm_A 94 ATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREG---------FEVTYLAPQRNGIIDLKELEAAMRDDT 164 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTT---------CEEEEECCCTTSCCCHHHHHHHCCTTE
T ss_pred hHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcC---------CEEEEeccCCCCccCHHHHHHhcCCCc
Confidence 9999997 55555 389999999999999988775552111 58889988764332221 111 3578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+++++++|+||||.+++ +++|+++|++||++||+||+|+.... +..+.. .+.++++.|+||.+|.+| +
T Consensus 165 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~---~~~~~~----~~~di~~~s~sK~~g~~g--~ 232 (423)
T 3lvm_A 165 ILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL---PIDLSQ----LKVDLMSFSGHKIYGPKG--I 232 (423)
T ss_dssp EEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS---CCCTTT----SCCSEEEEESTTTTSCSS--C
T ss_pred EEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCC---CcChhh----cCCCEEEechHHhcCCCC--e
Confidence 99999999999999999 88899999999999999999874221 222221 234599999999887555 9
Q ss_pred EEEEeeccccccCCchhHHHHHHHH-------hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIV-------CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
||++++++.... +.... .....+.+...+.++.+++.. ...++++++++++++++.+.+.|+++
T Consensus 233 G~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~ 303 (423)
T 3lvm_A 233 GALYVRRKPRVR--------IEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI-AKEEMATEMERLRGLRNRLWNGIKDI 303 (423)
T ss_dssp EEEEECBTTBCC--------CCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred EEEEEeccccCC--------CCccccCCcccccccCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998776422 11110 112233556666655555541 12346888999999999999999888
Q ss_pred -CCeeeCCCC---ceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCC-----------------CCeEEEEee--c
Q 013521 369 -GLKVNGGKN---APYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGG-----------------NEHIRVSAF--G 425 (441)
Q Consensus 369 -g~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~-----------------~~~iRls~~--~ 425 (441)
|+.+..+.+ +.++++.+++.+..++...+. + |.+.+|..|.+.. .+++||++. .
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~ 380 (423)
T 3lvm_A 304 EEVYLNGDLEHGAPNILNVSFNYVEGESLIMALK-D--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFT 380 (423)
T ss_dssp TTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTT-T--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTC
T ss_pred CCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHh-h--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCC
Confidence 888876543 356777776656666666544 4 9999998765421 489999985 3
Q ss_pred CHHHHHHHHHHHHhh
Q 013521 426 HREYISEACRRLKNF 440 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~ 440 (441)
+++++++++++|+++
T Consensus 381 t~e~i~~~~~~l~~~ 395 (423)
T 3lvm_A 381 TEEEIDYTIELVRKS 395 (423)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 789999999999875
No 110
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.98 E-value=1.2e-31 Score=263.31 Aligned_cols=336 Identities=12% Similarity=0.112 Sum_probs=229.0
Q ss_pred CCCeEEeCCC---CCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG---DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g---~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|++.+ .+-...++.+.+++.+.+.+.. .....| +.....++++.+++++ + .++|++|+|++++
T Consensus 38 g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~--~~~~~~-~~~~~~~l~~~la~~~----~--~~~v~~~~gg~~a 108 (406)
T 4adb_A 38 GKEYIDFAGGIAVNALGHAHPELREALNEQASKFW--HTGNGY-TNEPVLRLAKKLIDAT----F--ADRVFFCNSGAEA 108 (406)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCS--CCCTTS-CCHHHHHHHHHHHHHS----S--CSEEEEESSHHHH
T ss_pred CCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcc--cccCCc-CCHHHHHHHHHHHhhC----C--CCeEEEeCcHHHH
Confidence 4568898877 3322357899999999887532 111233 3344566666666663 4 4599999999999
Q ss_pred HHH-HHHhcC-------CC-CEEEEeCCCchhhHhHHHHhccccccccc-cCccceeEEeecCCCCCccCCCCCCCCccE
Q 013521 148 ISR-LQMLLG-------SN-VTVAVQDPSFPAYIDTSVIVGQAGKFLKE-TGKYRNIVYMNCRPENNFFPDLSTTSRTDI 217 (441)
Q Consensus 148 l~~-l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~ 217 (441)
+.+ +..++. +| |.|++++|+|+++...+...+.+..+... .....++..++.++-+.+...+ .+++++
T Consensus 109 ~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~~~ 186 (406)
T 4adb_A 109 NEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALI--DDSTCA 186 (406)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTC--STTEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHh--cCCeEE
Confidence 997 454443 55 99999999999986666666543221100 0000244555543211111111 267888
Q ss_pred EEEcCCCCccccCC--CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 218 IFFCSPNNPTGHAA--TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 218 v~i~~p~NPtG~~~--~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
|+++ |+||||.++ +.+++++|+++|++||+++|+||+|.+|.+.+.+.+....+..++ ++ ||||.++ +|+|+
T Consensus 187 v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d-~~---t~sK~~~-~G~r~ 260 (406)
T 4adb_A 187 VIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD-LL---TTAKALG-GGFPV 260 (406)
T ss_dssp EEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS-EE---EECGGGG-TTSCC
T ss_pred EEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCC-EE---Eechhhc-CCCCe
Confidence 8887 999999998 999999999999999999999999998766554433333322223 22 6899999 99999
Q ss_pred EEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC----Ce
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG----LK 371 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~ 371 (441)
||++++++++ +.+.........+.+++.+.++.++++.... ++.+++++++++.+.+.|++.+ ..
T Consensus 261 G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 329 (406)
T 4adb_A 261 GALLATEECA--------RVMTVGTHGTTYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLF 329 (406)
T ss_dssp EEEEECHHHH--------HTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred EEEEEcHHHH--------hhhccCCcCCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999988773 3333333334456788899888887763211 5677788888888888887652 11
Q ss_pred eeCCCCceEEEEEcCCC---ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 372 VNGGKNAPYVWVQFPGS---SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 372 ~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
......+.++|+.++.. ...++...++++ ||.+.|+. ++++|++ +..+++++++++++|++++
T Consensus 330 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~-gi~v~~~~------~~~iRi~~~~~~~~e~i~~~~~~l~~~l 397 (406)
T 4adb_A 330 SEVRGLGLLIGCVLNADYAGQAKQISQEAAKA-GVMVLIAG------GNVVRFAPALNVSEEEVTTGLDRFAAAC 397 (406)
T ss_dssp EEEEEETTEEEEEECTTTTTCHHHHHHHHHHT-TEECEESS------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHC-CcEEeecC------CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 11223578899999742 466777777766 99999863 6799995 4668999999999998753
No 111
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.98 E-value=2e-32 Score=268.20 Aligned_cols=333 Identities=14% Similarity=0.154 Sum_probs=225.7
Q ss_pred CCCeEEeCCC---CCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG---DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g---~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++|++.+ .+-...++.+.+++.+.+..... ....| +.....++++.+++++ + +++|++|+|++++
T Consensus 39 g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~gg~~a 109 (397)
T 2ord_A 39 GNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH--CSNLF-WNRPQMELAELLSKNT----F--GGKVFFANTGTEA 109 (397)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSC--CCTTS-EEHHHHHHHHHHHHTT----T--SCEEEEESSHHHH
T ss_pred CCEEEECCccccccccCCCCHHHHHHHHHHHHhccc--Ccccc-CCHHHHHHHHHHHHhc----C--CCeEEEeCCHHHH
Confidence 3468899876 33223678999999999876432 11123 3334566666666654 4 5899999999999
Q ss_pred HHH-HHHhcC------C-CCEEEEeCCCchhhHh-HHHHhccccccccccCccceeEEeecCCCCCccCCCCC--CCCcc
Q 013521 148 ISR-LQMLLG------S-NVTVAVQDPSFPAYID-TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTD 216 (441)
Q Consensus 148 l~~-l~~l~~------~-gd~Vlv~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~ 216 (441)
+.+ +..+.. + ++.|++.+|+|++... .+...|.+............++.++.++- .++++ .++++
T Consensus 110 ~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~----~~l~~~l~~~~~ 185 (397)
T 2ord_A 110 NEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNV----EDLRRKMSEDVC 185 (397)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCH----HHHHHHCCTTEE
T ss_pred HHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCH----HHHHHHhhcCeE
Confidence 987 444432 5 4789999999977544 66666642100000000012566665311 11211 25789
Q ss_pred EEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 217 IIFFCSPNNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 217 ~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+|++++||||||. +++.+++++|+++|++||+++|+||+|.++.+.+.+.++..+...++ + .||||.++ +|+|+
T Consensus 186 ~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d--~--~s~sK~~~-~G~r~ 260 (397)
T 2ord_A 186 AVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPD--V--LTTAKGLG-GGVPI 260 (397)
T ss_dssp EEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCS--E--EEECGGGG-TTSCC
T ss_pred EEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCC--e--eeeccccC-CCcCe
Confidence 9999999999999 99999999999999999999999999997765544333333332233 2 28899998 99999
Q ss_pred EEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--CCee-
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--GLKV- 372 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~- 372 (441)
||++++++++ . +.........+.+.+.+.++.++++.... ++.+++++++++++.+.|++. ++..
T Consensus 261 G~~~~~~~~~-~--------l~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 328 (397)
T 2ord_A 261 GAVIVNERAN-V--------LEPGDHGTTFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVV 328 (397)
T ss_dssp EEEEECSTTC-C--------CCTTSSCCSSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred EEEEEchHhc-c--------cCCCCcCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 9999998763 1 11111222345688888888887753111 456788888888888888765 2332
Q ss_pred -eCCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 373 -NGGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 373 -~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
..+..|+++|++++. .+..++.+.+++ +||.+.||. ++++||++ ..+++++++++++|+++
T Consensus 329 ~~~~~~g~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~------~~~iRis~~~~~~~e~i~~~~~~l~~~ 393 (397)
T 2ord_A 329 ADVRGMGLMIGIQFREEVSNREVATKCFE-NKLLVVPAG------NNTIRFLPPLTVEYGEIDLAVETLKKV 393 (397)
T ss_dssp EEEEEETTEEEEEECTTSCHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEeEEEEEEECChHHHHHHHHHHHH-CCCEEccCC------CCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 112357889999974 346677777776 599999862 57899994 56899999999999875
No 112
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.98 E-value=4.6e-32 Score=265.15 Aligned_cols=333 Identities=11% Similarity=0.087 Sum_probs=229.5
Q ss_pred CCCeEEeCCCCCCCC---CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDTTQP---IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~~~~---~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++|++.+.+... .++.+.+++.+.+..... ....| +..-..++++.+++++ + ++++++|+|++++
T Consensus 35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~~gt~a 105 (392)
T 3ruy_A 35 GNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTL--TSRAF-HSDQLGPWYEKVAKLT----N--KEMVLPMNTGAEA 105 (392)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSC--CCTTS-EETTHHHHHHHHHHHH----T--CSEEEEESSHHHH
T ss_pred CCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccc--ccccc-CCHHHHHHHHHHHHhc----C--CCEEEEeCcHHHH
Confidence 456888887754433 578999999998875421 11112 3445677777777775 4 7899999999999
Q ss_pred HHH-HHHhcCC----------CCEEEEeCCCchhhHhHHHHhccccccc-cccCccceeEEeecCCCCCccCCCCC--CC
Q 013521 148 ISR-LQMLLGS----------NVTVAVQDPSFPAYIDTSVIVGQAGKFL-KETGKYRNIVYMNCRPENNFFPDLST--TS 213 (441)
Q Consensus 148 l~~-l~~l~~~----------gd~Vlv~~p~y~~~~~~~~~~g~~~~~~-~~~~~~~~v~~v~~~~~~~~~~~~~~--~~ 213 (441)
+.+ +..+..+ +|.|+++.|+|++....+...+...... .......++..++.++ ..++++ .+
T Consensus 106 ~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~l~~~l~~ 181 (392)
T 3ruy_A 106 VETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGD----LEALKAAITP 181 (392)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTC----HHHHHHHCCT
T ss_pred HHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCccc----HHHHHHHhcc
Confidence 987 5444433 6799999999988766665544321100 0000001344444421 111111 26
Q ss_pred CccEEEEcCCCCccccCCCHHH-HHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc
Q 013521 214 RTDIIFFCSPNNPTGHAATWQQ-LKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG 292 (441)
Q Consensus 214 ~~~~v~i~~p~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G 292 (441)
++++|++++|+||||.+++.++ +++|+++|++||+++|+||+|.+|...+.+.......-.++ +.||||.++ +|
T Consensus 182 ~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d----~~~~SK~l~-gG 256 (392)
T 3ruy_A 182 NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPD----MYILGKALG-GG 256 (392)
T ss_dssp TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS----EEEECGGGG-TT
T ss_pred CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCC----EEEEchhhh-CC
Confidence 8999999999999999996555 99999999999999999999987766554333222221122 337899986 57
Q ss_pred -ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC--
Q 013521 293 -VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG-- 369 (441)
Q Consensus 293 -~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-- 369 (441)
+|+||++++++++ +.+.........+.+++.+.++.++++.. .. ++.+++++++++++.+.|++++
T Consensus 257 ~~~~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~-~~~~~~~~~~~~~l~~~L~~~~~~ 325 (392)
T 3ruy_A 257 VFPISCAAANRDIL--------GVFEPGSHGSTFGGNPLACAVSIAALEVL--EE-EKLTERSLQLGEKLVGQLKEIDNP 325 (392)
T ss_dssp TSCCEEEEECHHHH--------TTCCTTSSCCSSTTCHHHHHHHHHHHHHH--HH-TTHHHHHHHHHHHHHHHHTTCCCT
T ss_pred hhhhEEEEECHHHH--------hhhccCCcCCCCCCCHHHHHHHHHHHHHH--Hh-hhHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999988763 22332233334567889999888888632 21 6778889999999999999874
Q ss_pred -CeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 370 -LKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 370 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+.... ..|.++++.++. +..++.+.++ ++||.+.||. ++++|++ +..+++++++++++|++++
T Consensus 326 ~~~~~~-~~g~~~~~~~~~-~~~~l~~~l~-~~gi~v~~~~------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 326 MITEVR-GKGLFIGIELNE-PARPYCEQLK-AAGLLCKETH------ENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp TEEEEE-EETTEEEEEESS-CSHHHHHHHH-TTTEECCCBT------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEE-eeeeEEEEEEcc-hHHHHHHHHH-HCCcEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 33333 346777777875 5677777776 5699999864 5799999 4568999999999998863
No 113
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.98 E-value=3e-31 Score=262.59 Aligned_cols=350 Identities=13% Similarity=0.062 Sum_probs=208.2
Q ss_pred CCCeEEeCCC--CCCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG--DTTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g--~~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|++.+ ..++. .++.+.+++.+.+.... .|.+..+..++++++++++.+.++.++++|++|+|++++
T Consensus 28 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~------~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea 101 (430)
T 3i4j_A 28 GRRYLDGSSGALVANIGHGRAEVGERMAAQAARLP------FVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEA 101 (430)
T ss_dssp SCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC------CCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHH
T ss_pred CCEEEECCCchhccccCCCCHHHHHHHHHHHHhcc------cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHH
Confidence 3568888876 33332 48999999999887532 232333555667777777766567788999999999999
Q ss_pred HHH-HHHhc--------CCCCEEEEeCCCchhhHhHHHHhcccccccccc-Cccc--eeEEeecCCCC---Ccc-CCCCC
Q 013521 148 ISR-LQMLL--------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKET-GKYR--NIVYMNCRPEN---NFF-PDLST 211 (441)
Q Consensus 148 l~~-l~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~--~v~~v~~~~~~---~~~-~~~~~ 211 (441)
+.. +..++ .+++.|++.+|+|+++...+...+......... .... ++..++.+... ... .++++
T Consensus 102 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 181 (430)
T 3i4j_A 102 TESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRA 181 (430)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHH
Confidence 997 54444 457899999999999876555544321100000 0000 22333332110 000 11221
Q ss_pred -----CCCccEEEEcCC-CC-cccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc-CCCcceeEEEe
Q 013521 212 -----TSRTDIIFFCSP-NN-PTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI-PGAREVAIEIS 282 (441)
Q Consensus 212 -----~~~~~~v~i~~p-~N-PtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~-~~~~~~~i~i~ 282 (441)
.++..++++++| +| ++|. +++.+++++|.++|++||+++|+||+|.+|...+........ ...++ +.
T Consensus 182 ~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~d----i~ 257 (430)
T 3i4j_A 182 LLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPD----IA 257 (430)
T ss_dssp HHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCS----EE
T ss_pred HHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCc----EE
Confidence 113344555666 66 8886 678889999999999999999999999988665543333333 21222 33
Q ss_pred cCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHH----HhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHH
Q 013521 283 SFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI----VCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKE 356 (441)
Q Consensus 283 S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~ 356 (441)
+|||.++ +| +|+||+++++++ ++.+... ......+.++++|.++.++++.... ...++.++..+.
T Consensus 258 t~sK~l~-~G~~r~G~~~~~~~i--------~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 328 (430)
T 3i4j_A 258 VLGKGLA-AGYAPLAGLLAAPQV--------YETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQ 328 (430)
T ss_dssp EECGGGT-TTSSCCEEEEECHHH--------HHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred EEccccc-CCccccEEEEECHHH--------HHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 6999998 79 999999998887 3555432 2233445789999999888862111 223444444444
Q ss_pred HHHHHHHHHHhC-CCeeeCCCCceEEEEEcCCCC----------hHHHHHHHHHhcCeEEeCCCCc-CCCCCCeEEEEee
Q 013521 357 NAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGSS----------SWDVFAEILEKTHILTIPGSGF-GPGGNEHIRVSAF 424 (441)
Q Consensus 357 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ll~~~gi~v~pg~~f-~~~~~~~iRls~~ 424 (441)
.++.+.+.+.++ ++.... ..|.|+|+++.+.. ..++.+.+++ +||.+.|+..+ .+.+.+++||++.
T Consensus 329 ~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~~~~~~iRi~~~ 406 (430)
T 3i4j_A 329 LLAGLQALQARFPQMMQVR-GTGLLLGVVLGDLATGQAFETPGIASRIGAAALK-RGLITYPGSGAEPNGRGDHLLLGPP 406 (430)
T ss_dssp HHHHHHHHHHHCTTEEEEE-EETTEEEEEEC------------CHHHHHHHHHH-TTEECC-----------CEEEECCC
T ss_pred HHHHHHHHHHhCCCeEEEE-EEEEEEEEEeccccccCCCccHHHHHHHHHHHHh-CCCEEEecccccCCCCCCEEEEECC
Confidence 444454444444 344444 35778888885211 2456677665 59999998432 3334689999974
Q ss_pred --cCHHHHHHHHHHHHhhC
Q 013521 425 --GHREYISEACRRLKNFL 441 (441)
Q Consensus 425 --~~~~~~~~~l~~l~~~l 441 (441)
.+++++++++++|++++
T Consensus 407 ~~~t~e~i~~~l~~l~~~l 425 (430)
T 3i4j_A 407 LSITAAEVDGLLALLAGAL 425 (430)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 58999999999998763
No 114
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.98 E-value=9.8e-31 Score=252.01 Aligned_cols=321 Identities=11% Similarity=0.094 Sum_probs=223.6
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
+++|+|+.+.+ .++++.+.+++.+.+. .....|++.....++++.+++++ + .+++|++|+|+++++.+
T Consensus 7 ~~~id~~~~~~-~~~~~~v~~a~~~~~~-----~~~~~~~~~~~~~~l~~~la~~~----g-~~~~v~~~~~gt~a~~~a 75 (356)
T 1v72_A 7 PPALGFSSDNI-AGASPEVAQALVKHSS-----GQAGPYGTDELTAQVKRKFCEIF----E-RDVEVFLVPTGTAANALC 75 (356)
T ss_dssp CCCCBCSCGGG-CCCCHHHHHHHHHTTS-----SCCCSTTCSHHHHHHHHHHHHHH----T-SCCEEEEESCHHHHHHHH
T ss_pred CceEeeccCCc-cCCCHHHHHHHHhhcc-----CcccccccchHHHHHHHHHHHHh----C-CCCcEEEeCCccHHHHHH
Confidence 46889998754 4577889999888642 12345655555566777777665 5 45569999999999987
Q ss_pred HHHhcCCCCEEEEeCCCchhhHhH--HHHh--ccccccccccCccceeEEeecCCCCCccCC-CCC---C-------CCc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYIDT--SVIV--GQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST---T-------SRT 215 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~~--~~~~--g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~---~-------~~~ 215 (441)
+..++++||.|+++.|+|.+.... +... | .+++.++.+. ..++++ +++ . +++
T Consensus 76 l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-~~~d~~~l~~~~i~~~~~~~~~~~ 142 (356)
T 1v72_A 76 LSAMTPPWGNIYCHPASHINNDECGAPEFFSNG------------AKLMTVDGPA-AKLDIVRLRERTREKVGDVHTTQP 142 (356)
T ss_dssp HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTS------------CEEEECCCGG-GCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred HHHhcCCCCEEEEcCccchhhhhchHHHHHhCC------------cEEEEecCCC-CeEcHHHHHHHhhhcchhhccCCc
Confidence 666778999999999999887666 6666 7 4778887642 222111 111 1 268
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc--CCCCCcccccCCCcceeEEEecCCcccCCccc
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT--DPSPRSIYEIPGAREVAIEISSFSKFAGFTGV 293 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~--~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~ 293 (441)
++|++++||| ||.++|.+++++|+++|++||+++|+|++|..+.. .+.......+....+ +++.|+||. +. .+
T Consensus 143 ~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~-g~-~~ 217 (356)
T 1v72_A 143 ACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVD--ALSFGATKN-GV-LA 217 (356)
T ss_dssp EEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCC--EEEECCGGG-TC-SS
T ss_pred eEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCC--EEEEecccC-CC-cC
Confidence 9999999987 99999999999999999999999999999985421 121112211111122 445689998 43 33
Q ss_pred eeEEEEeeccccccCCchhHHHHHHHHhhhc--CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Q 013521 294 RLGWTVVPEELRYSNGYPVIKDFNRIVCTCF--NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GL 370 (441)
Q Consensus 294 r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 370 (441)
..||++++++++ +.+........ ...+...+.++...+.+.. ..+..++++++++++.+.|+++ |+
T Consensus 218 G~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~l~~~L~~~~g~ 286 (356)
T 1v72_A 218 AEAIVLFNTSLA--------TEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDL---WLRNARKANAAAQRLAQGLEGLGGV 286 (356)
T ss_dssp CEEEEESSGGGH--------HHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred ccEEEEECHHHH--------hhHHHHhhccCchhhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 445888887763 44443332211 1123344444556665422 2445677788899999999886 88
Q ss_pred eeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 371 KVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
++..+.+++++|++++ .++.+.+.+ +||.+.||. |+ ++++|+++. .+++++++++++|++++
T Consensus 287 ~~~~~~~~~~~~~~~~----~~~~~~l~~-~gi~v~~g~-~~---~~~iRi~~~~~~~~~~i~~~~~~l~~~l 350 (356)
T 1v72_A 287 EVLGGTEANILFCRLD----SAMIDALLK-AGFGFYHDR-WG---PNVVRFVTSFATTAEDVDHLLNQVRLAA 350 (356)
T ss_dssp EEESCCCSSEEEEEEC----HHHHHHHHH-TTCBCBCSS-SS---TTEEEEECCTTCCHHHHHHHHHHHHHTC
T ss_pred EEccCCCccEEEEEcC----HHHHHHHHh-cCeEEeccc-cC---CCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 8876778899999985 367777654 599999987 54 679999963 48999999999998864
No 115
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.98 E-value=3.3e-31 Score=260.46 Aligned_cols=320 Identities=14% Similarity=0.109 Sum_probs=226.0
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCCCCc-EEEcCCcHHHHHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKDMGIEGDE-IFISDGAQSDISR 150 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~-I~~t~G~~~al~~ 150 (441)
.+.++-| +.++++.+.+++.+.+ ..+|.+ .....++++.+++++ +.++++ |++|+|+++++.+
T Consensus 14 ~~~~~pg--p~~~~~~v~~a~~~~~--------~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~v~~~~sgt~al~~ 79 (411)
T 3nnk_A 14 RLLMGPG--PINADPRVLRAMSSQL--------IGQYDPAMTHYMNEVMALYRGVF----RTENRWTMLVDGTSRAGIEA 79 (411)
T ss_dssp CEEESSS--CCCCCHHHHHHHTSCC--------CCTTCHHHHHHHHHHHHHHHHHH----TCCCSEEEEEESCHHHHHHH
T ss_pred ceeecCC--CCCCCHHHHHHhhccc--------cccccHHHHHHHHHHHHHHHHHh----CCCCCcEEEECCCcHHHHHH
Confidence 3445433 4557788877776522 122322 122355566666554 776665 7888899999987
Q ss_pred -HHHhcCCCCEEEEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C-CCccEEEEcCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T-SRTDIIFFCSP 223 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~-~~~~~v~i~~p 223 (441)
+..++++||+|+++.|+|++ +...+...| .+++.++.+.+..++++ +++ . .++++|++++|
T Consensus 80 ~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~ 147 (411)
T 3nnk_A 80 ILVSAIRPGDKVLVPVFGRFGHLLCEIARRCR------------AEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQG 147 (411)
T ss_dssp HHHHHCCTTCEEEEEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred HHHHhcCCCCEEEEecCCchHHHHHHHHHHcC------------CeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCC
Confidence 67788999999999999988 777888888 58889988654332221 211 1 38999999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
+||||.+++ +++|+++|++||+++|+|++++.... +.... ..+.++++.|+||+++ ++.++||++++++
T Consensus 148 ~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~---~~~~~----~~~~d~~~~s~~K~l~-~~~g~g~~~~~~~ 216 (411)
T 3nnk_A 148 DTSTTMLQP---LAELGEICRRYDALFYTDATASLGGN---PLETD----VWGLDAVSAGMQKCLG-GPSGTSPITLSAR 216 (411)
T ss_dssp ETTTTEECC---CTTHHHHHHHHTCEEEEECTTTBTTB---CCCTT----TTTCSEEECCSTTTTC-CCSSEEEEEECHH
T ss_pred CCCcceecc---HHHHHHHHHHcCCEEEEECCcccCCc---ccchh----ccCCcEEEecCccccC-CCCceEEEEECHH
Confidence 999999999 78999999999999999999873211 22221 1234699999999864 4557999999887
Q ss_pred ccccCCchhHHHHHHHH------------------------------------hhhcCCCcHHHHHHHHHhcCCCcHHHH
Q 013521 304 LRYSNGYPVIKDFNRIV------------------------------------CTCFNGASNIVQAGGLACLSPDGFQAL 347 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~ 347 (441)
++ +.+.... .....+.+...+.++.+++.......+
T Consensus 217 ~~--------~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~ 288 (411)
T 3nnk_A 217 ME--------EAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGL 288 (411)
T ss_dssp HH--------HHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HH--------HHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 73 3332211 011233466666666566542111226
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeCCCC---ceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe
Q 013521 348 RTVIDYYKENAKIIVDAFQSLGLKVNGGKN---APYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA 423 (441)
Q Consensus 348 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~ 423 (441)
++++++++++++++.+.|++.|+++..+.+ +.++|+.++ +.+..++.+.+++++||.+.||. +....+++||++
T Consensus 289 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~--~~~~~~~iRi~~ 366 (411)
T 3nnk_A 289 DYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSF--GPLHGKVWRIGT 366 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECC--GGGTTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCcc--CCCCCCEEEEeC
Confidence 888999999999999999998888765443 678999997 55677888888877799999984 333467999997
Q ss_pred -e--cCHHHHHHHHHHHHhh
Q 013521 424 -F--GHREYISEACRRLKNF 440 (441)
Q Consensus 424 -~--~~~~~~~~~l~~l~~~ 440 (441)
. .+++++++++++|+++
T Consensus 367 ~~~~~~~~~i~~~~~~l~~~ 386 (411)
T 3nnk_A 367 MGYNARKDCVMTTLSALEAV 386 (411)
T ss_dssp CGGGCSHHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHHHHHHH
Confidence 3 3789999999999875
No 116
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.97 E-value=5e-32 Score=267.78 Aligned_cols=341 Identities=9% Similarity=0.062 Sum_probs=224.3
Q ss_pred CCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++|++.+.+ ++ .+++.+.+++.+.+.... ....+|.+..+..+||++|++++. +-.+++|++|+|++++
T Consensus 40 g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~---~~~~~~v~~~~g~~~a 114 (426)
T 1sff_A 40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS--HTCFQVLAYEPYLELCEIMNQKVP---GDFAKKTLLVTTGSEA 114 (426)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCS--CCCTTTEECHHHHHHHHHHHHHSS---CSSCEEEEEESSHHHH
T ss_pred CCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCC---cccccEEEEeCchHHH
Confidence 456889887763 33 267889999999886532 112256677899999999999962 2134899999999999
Q ss_pred HHH-HH---HhcCCCCEEEEeCCCchhhHh-HHHHhccccccc-cccCccceeEEeecCC--CC-CccCC---CCC---C
Q 013521 148 ISR-LQ---MLLGSNVTVAVQDPSFPAYID-TSVIVGQAGKFL-KETGKYRNIVYMNCRP--EN-NFFPD---LST---T 212 (441)
Q Consensus 148 l~~-l~---~l~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~~-~~~~~~~~v~~v~~~~--~~-~~~~~---~~~---~ 212 (441)
+.+ +. .+.++| .|++++|+|+++.. .....|.+..+. ........++.++.+. ++ ++..+ +++ .
T Consensus 115 ~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~ 193 (426)
T 1sff_A 115 VENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKN 193 (426)
T ss_dssp HHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHh
Confidence 997 44 456776 89999999988654 455555320000 0000001255666642 11 11112 221 1
Q ss_pred ----CCccEEEEc-CCCCccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCc
Q 013521 213 ----SRTDIIFFC-SPNNPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSK 286 (441)
Q Consensus 213 ----~~~~~v~i~-~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK 286 (441)
+++++|+++ +|+| || .++|.+++++|+++|++||++||+||+|.+|.+.+...++... +..+.+.||||
T Consensus 194 ~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~----~~~~di~s~sK 268 (426)
T 1sff_A 194 DAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQM----GVAPDLTTFAK 268 (426)
T ss_dssp TCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGT----TSCCSEEEECG
T ss_pred ccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhc----CCCCCEEEEcc
Confidence 356676664 5578 99 7899999999999999999999999999987655432222222 11223459999
Q ss_pred ccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 013521 287 FAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 287 ~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
.++ +|+|+||++++++++ +.+.........+.+++.|.++.++++.... ....++++++++.+.+.|+
T Consensus 269 ~~~-~GlriG~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~ 336 (426)
T 1sff_A 269 SIA-GGFPLAGVTGRAEVM--------DAVAPGGLGGTYAGNPIACVAALEVLKVFEQ---ENLLQKANDLGQKLKDGLL 336 (426)
T ss_dssp GGG-TSSCCEEEEEEHHHH--------TTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHH
T ss_pred ccc-CCCceEEEEEcHHHH--------hhhccCCcCcCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHH
Confidence 999 599999999998774 2222111223345788888888877652111 2344556666666666665
Q ss_pred hC----C-CeeeCCCCceEEEEEcCC---------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHH
Q 013521 367 SL----G-LKVNGGKNAPYVWVQFPG---------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYI 430 (441)
Q Consensus 367 ~~----g-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~ 430 (441)
++ . +....+ .|+|+|++++. .+..++...+++ +||.+.||..| ++++||++ ..+++++
T Consensus 337 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~----~~~iRi~~~~~~~~~~i 410 (426)
T 1sff_A 337 AIAEKHPEIGDVRG-LGAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY----YNVLRILVPLTIEDAQI 410 (426)
T ss_dssp HHHHTCTTEEEEEE-ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT----SCEEEECCCTTCCHHHH
T ss_pred HHHHhCCCeEEEEE-EEEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCC----CCEEEEECCccCCHHHH
Confidence 53 2 222333 48899999842 124556677665 59999998754 57899997 4589999
Q ss_pred HHHHHHHHhh
Q 013521 431 SEACRRLKNF 440 (441)
Q Consensus 431 ~~~l~~l~~~ 440 (441)
++++++|+++
T Consensus 411 ~~~~~~l~~~ 420 (426)
T 1sff_A 411 RQGLEIISQC 420 (426)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 117
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.97 E-value=7.3e-32 Score=264.25 Aligned_cols=339 Identities=14% Similarity=0.090 Sum_probs=214.4
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC----CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA----EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.+.|+.+.+. ++|+.+.+++.+.+.+....... .|.. .....++++.++++ +++++++|++|+|++++
T Consensus 19 ~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~----~~~~~~~v~~~~g~t~a 92 (400)
T 3vax_A 19 SHMTYLDAAATT-RVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLAST----VSAEPDELIFTSGATES 92 (400)
T ss_dssp ---CCCCCCCCS-SSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHH----TTCCGGGEEEESCHHHH
T ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHH----cCCCCCcEEEeCCHHHH
Confidence 457778877665 67889999999988653210111 1211 12245556666655 48888999999999999
Q ss_pred HHH-HHHhc----CCCC-EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEE
Q 013521 148 ISR-LQMLL----GSNV-TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDII 218 (441)
Q Consensus 148 l~~-l~~l~----~~gd-~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v 218 (441)
+.+ +..++ ++|| .|+++.++|+++...+..+...| .+++.++.+.++.++++ +++ .++++++
T Consensus 93 l~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g---------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v 163 (400)
T 3vax_A 93 NNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRG---------FEVDFLTPGPSGRISVEGVMERLRPDTLLV 163 (400)
T ss_dssp HHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTT---------CEEEEECCCTTCCCCHHHHHTTCCTTEEEE
T ss_pred HHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcC---------CeEEEEccCCCCCcCHHHHHHhcCCCceEE
Confidence 998 56666 8999 99999999999877776653222 48889988764333221 222 3678999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++++||||||.+++ +++|+++|++||++||+|++|+.... +..+ ... .++++.|+||.+|.+| +|++
T Consensus 164 ~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~---~~~~---~~~--~d~~~~s~~K~~g~~g--~g~~ 230 (400)
T 3vax_A 164 SLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGYGKV---PGDL---TTP--IDMISISGHKIGAPKG--VGAL 230 (400)
T ss_dssp ECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTTTTS---GGGG---GSC--CSEEEEETGGGTSCSS--CEEE
T ss_pred EEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhcCCC---CcCh---hhc--CcEEEEeHHHhCCCCc--eEEE
Confidence 99999999999999 78999999999999999999984211 1122 111 3489999999877444 6777
Q ss_pred E-eeccccc---cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013521 299 V-VPEELRY---SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG 374 (441)
Q Consensus 299 ~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 374 (441)
+ ++++.+. ...................+.+...+.++.+++.. ..+++++.+++++++++++.+.|+..|+++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 309 (400)
T 3vax_A 231 VTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI-FEAEHAQWQVAAQDLRSRLLAGLASTSFQVNG 309 (400)
T ss_dssp EECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHTTTTCEECS
T ss_pred EEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHhhCCCCEEEeC
Confidence 7 7762110 00000000000001122333556666655555541 12356888999999999999999833888876
Q ss_pred CCC---ceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCC-----------------CCeEEEEe-e--cCHHHHH
Q 013521 375 GKN---APYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGG-----------------NEHIRVSA-F--GHREYIS 431 (441)
Q Consensus 375 ~~~---~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~-----------------~~~iRls~-~--~~~~~~~ 431 (441)
+.+ +.++++.+++.+..++.+.|. +||.+.+|..|.... .++|||++ . .++++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~L~--~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~ 387 (400)
T 3vax_A 310 DQDHVVPHILNLSFEDVDAEAFLVTLK--DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVE 387 (400)
T ss_dssp CTTSBCTTEEEEECTTCCHHHHHHHHH--HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------
T ss_pred CcccCCCCEEEEEeCCCCHHHHHHHHh--cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHH
Confidence 544 457888888666777777766 599999997664311 48999999 5 3789999
Q ss_pred HHHHHHHhhC
Q 013521 432 EACRRLKNFL 441 (441)
Q Consensus 432 ~~l~~l~~~l 441 (441)
+++++|++++
T Consensus 388 ~~~~~l~~~~ 397 (400)
T 3vax_A 388 ELARGVAKLK 397 (400)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 118
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.97 E-value=1.2e-30 Score=256.87 Aligned_cols=319 Identities=12% Similarity=0.122 Sum_probs=224.1
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCCCCcEE-EcCCcHHHHHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKDMGIEGDEIF-ISDGAQSDISR 150 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~I~-~t~G~~~al~~ 150 (441)
.+.|+.+ +.+.++.+.+++.+ .....|.+ .....++++.++++ ++.++++++ +++|+++++.+
T Consensus 12 ~~~~~p~--p~~~~~~v~~a~~~--------~~~~~~~~~~~~~~~~l~~~la~~----~g~~~~~~~~~~~s~t~al~~ 77 (416)
T 3isl_A 12 RTIMTPG--PVEVDPRVLRVMST--------PVVGQFDPAFTGIMNETMEMLREL----FQTKNRWAYPIDGTSRAGIEA 77 (416)
T ss_dssp CEECSSS--SCCCCHHHHHHTTS--------CCCCTTSHHHHHHHHHHHHHHHHH----TTCCCSEEEEEESCHHHHHHH
T ss_pred ceeecCC--CcCcCHHHHHHhcc--------cCCCCccHHHHHHHHHHHHHHHHH----hCCCCCcEEEecCcHHHHHHH
Confidence 4455533 34456766665544 22223322 22345555556555 478877776 88889999987
Q ss_pred -HHHhcCCCCEEEEeCCCchh--hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C-CCccEEEEcCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPA--YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T-SRTDIIFFCSP 223 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~-~~~~~v~i~~p 223 (441)
+..++++||+|++++|+|++ +...++..| .+++.++.+.++.++++ +++ . +++++|++++|
T Consensus 78 ~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~ 145 (416)
T 3isl_A 78 VLASVIEPEDDVLIPIYGRFGYLLTEIAERYG------------ANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHG 145 (416)
T ss_dssp HHHHHCCTTCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred HHHHhcCCCCEEEEecCCcccHHHHHHHHhcC------------CeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEcc
Confidence 67788999999999999998 666777778 58999998765432222 221 1 47899999999
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
|||||.+++ +++|.++|++||+++|+|++|+.... +..+.. .+.++++.|+||+++ ++.++||++++++
T Consensus 146 ~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~----~~~d~~~~s~~K~l~-g~~g~g~~~~~~~ 214 (416)
T 3isl_A 146 ETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGC---EVKVDE----WKIDAAIGGTQKCLS-VPSGMAPITYNER 214 (416)
T ss_dssp ETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTS---CCCTTT----TTCSEEECCSSSTTC-CCSSEEEEEECHH
T ss_pred CCCCceecC---HHHHHHHHHHcCCEEEEECCccccCC---Ccchhh----cCCCEEEecCccccC-CCCCeEEEEECHH
Confidence 999999999 88899999999999999999873221 122211 234599999999764 5557999999887
Q ss_pred ccccCCchhHHHHHHH--------------------------------------HhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 304 LRYSNGYPVIKDFNRI--------------------------------------VCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
++ +.+... ......+.+...+.++.+++... ..
T Consensus 215 ~~--------~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~ 285 (416)
T 3isl_A 215 VA--------DVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLV-LE 285 (416)
T ss_dssp HH--------HHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHH-HH
T ss_pred HH--------HHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH-HH
Confidence 73 222211 01112245666666666666421 23
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCC---ceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEE
Q 013521 346 A-LRTVIDYYKENAKIIVDAFQSLGLKVNGGKN---APYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIR 420 (441)
Q Consensus 346 ~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iR 420 (441)
+ +++.+++++++++++.+.|++.|+++..+.+ +.++|+.++ +.+..++.+.|++++||.+.+|.. +..++++|
T Consensus 286 ~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~--~~~~~~iR 363 (416)
T 3isl_A 286 EGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFG--PLAGKIWR 363 (416)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCS--TTTTTEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCC--CCCCCEEE
Confidence 3 6889999999999999999998888766543 678999996 556778888887777999999873 34568999
Q ss_pred EEee--cCHHH-HHHHHHHHHhh
Q 013521 421 VSAF--GHREY-ISEACRRLKNF 440 (441)
Q Consensus 421 ls~~--~~~~~-~~~~l~~l~~~ 440 (441)
|++. .++++ +++++++|+++
T Consensus 364 i~~~~~~~~~e~i~~~~~~l~~~ 386 (416)
T 3isl_A 364 IGTMGYSCRKENVLFVLAGLEAV 386 (416)
T ss_dssp EECCGGGCSHHHHHHHHHHHHHH
T ss_pred EecccCCCcHHHHHHHHHHHHHH
Confidence 9972 34455 99999999875
No 119
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.97 E-value=9.7e-31 Score=253.94 Aligned_cols=317 Identities=16% Similarity=0.127 Sum_probs=207.4
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQSDISRL 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~al~~l 151 (441)
+++|++.+.++.+.++.+.+++. . |. +...+.+.+++++.+.++. +++++++|+|+++++.++
T Consensus 29 ~v~~~~~~~~~~~~~~~v~~a~~----~---------~~---~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~ 92 (374)
T 2aeu_A 29 ALYDLSGLSGGFLIDEKDKALLN----T---------YI---GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILAT 92 (374)
T ss_dssp GCEECSSCCCCCCCCHHHHHHHT----S---------TT---HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred ceeeecccCCCCCCCHHHHHHHH----H---------hc---CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHH
Confidence 68999999888889999888885 1 11 1123445555555443466 358999999999999984
Q ss_pred HHhcCCCCEEEEeCCCchhhHh---HHHHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccE-EEEcCCCCcc
Q 013521 152 QMLLGSNVTVAVQDPSFPAYID---TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDI-IFFCSPNNPT 227 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-v~i~~p~NPt 227 (441)
...+ +||+|+++.|+|++... .+...| .+++.+ .+.+ .+ ... .+++++ |++++|||||
T Consensus 93 ~~~~-~gd~Vl~~~~~y~~~~~~~~~~~~~g------------~~~~~v-~d~~-~l-~~~--~~~~~~~v~~~~p~npt 154 (374)
T 2aeu_A 93 ILAL-KPKKVIHYLPELPGHPSIERSCKIVN------------AKYFES-DKVG-EI-LNK--IDKDTLVIITGSTMDLK 154 (374)
T ss_dssp HHHH-CCSEEEEECSSSSCCTHHHHHHHHTT------------CEEEEE-SCHH-HH-HTT--CCTTEEEEEECBCTTSC
T ss_pred HHhC-CCCEEEEecCCCCccHHHHHHHHHcC------------cEEEEe-CCHH-HH-Hhc--CCCccEEEEEccCCCCC
Confidence 3344 99999999998877544 455556 466666 3221 11 112 357899 9999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEccccccccc-CCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT-DPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~-~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
|. +..++++|+++|++||+++|+||+|+.+.. .....+.... +.+++++|+||.+ +|+|+||+++++++
T Consensus 155 G~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~----~~di~~~S~sK~l--~g~~~G~~~~~~~~-- 224 (374)
T 2aeu_A 155 VI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL----GADLVVTSTDKLM--EGPRGGLLAGKKEL-- 224 (374)
T ss_dssp BC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH----TCSEEEEETTSSS--SSCSCEEEEEEHHH--
T ss_pred CC--CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCcccc----CCcEEEecCcccc--cCcceEEEEECHHH--
Confidence 97 778899999999999999999999987642 1101112222 2358899999996 57899999999877
Q ss_pred cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHH----HHHHHHHHHhC----CCeeeCCCCc
Q 013521 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKEN----AKIIVDAFQSL----GLKVNGGKNA 378 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~----g~~~~~~~~~ 378 (441)
++.+.........+++++.+.++.+.+.....+.+++..+..+.. ++.+.+.|... |+.+..++.|
T Consensus 225 ------~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g 298 (374)
T 2aeu_A 225 ------VDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTG 298 (374)
T ss_dssp ------HHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSE
T ss_pred ------HHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCce
Confidence 455555444333346788888888887643221122222222222 45555555542 4555433344
Q ss_pred -eEEEEEcCCC----ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec-C--HHHHHHHHHHHHhh
Q 013521 379 -PYVWVQFPGS----SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG-H--REYISEACRRLKNF 440 (441)
Q Consensus 379 -~~~~~~~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~-~--~~~~~~~l~~l~~~ 440 (441)
++.|.+++.. ++.+++..+++++||.+.||..| +.+++++||+++. + +.+++++++.|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~-~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~ 367 (374)
T 2aeu_A 299 FVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM-PGASKSLRIDLTSRDAERIDDNYIIKAIVES 367 (374)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSS-CSSCCSEEEETTSGGGGGSCHHHHHHHHHHH
T ss_pred EEEEeecccccccccchHHHHHHHHHhCCEEEecCCCC-CCCCCeEEEEcCCchHHHHHHHHHHHHHHHH
Confidence 4455555311 11236667787789999999877 3356789999854 2 22367777666654
No 120
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.97 E-value=3.4e-31 Score=254.53 Aligned_cols=315 Identities=18% Similarity=0.209 Sum_probs=210.3
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
++|+|+.+.+++ +++.+.+++.+... ....|++..+..+||+++|+++ +. +++++++|+++++.+ +
T Consensus 4 ~~i~~~~~~~~~-p~~~~~~a~~~~~~------~~~~y~~~~~~~~l~~~la~~~----g~--~~~~~~~~gt~a~~~~~ 70 (347)
T 1jg8_A 4 MMIDLRSDTVTK-PTEEMRKAMAQAEV------GDDVYGEDPTINELERLAAETF----GK--EAALFVPSGTMGNQVSI 70 (347)
T ss_dssp -CEECSCGGGCC-CCHHHHHHHHTCCC------CCGGGTCCHHHHHHHHHHHHHH----TC--SEEEEESCHHHHHHHHH
T ss_pred eEEEeccccCCC-CCHHHHHHHhcCCC------CCcccCCChHHHHHHHHHHHHh----CC--ceEEEecCcHHHHHHHH
Confidence 579999999876 55677777765321 1235777789999999999997 44 467777777888776 6
Q ss_pred HHhcCCCCEEEEeCCCchhhHh---HHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--C------CCccEEE
Q 013521 152 QMLLGSNVTVAVQDPSFPAYID---TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T------SRTDIIF 219 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~------~~~~~v~ 219 (441)
..++++||+|++++|+|..... .+...| .+++.+ .++++.++++ +++ . +++++|+
T Consensus 71 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~ 137 (347)
T 1jg8_A 71 MAHTQRGDEVILEADSHIFWYEVGAMAVLSG------------VMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIA 137 (347)
T ss_dssp HHHCCTTCEEEEETTCHHHHSSTTHHHHHTC------------CEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEE
T ss_pred HHhcCCCCEEEEcCcchhhhccccchhhccC------------eEEEEe-cCCCCccCHHHHHHHhccccccccCceEEE
Confidence 7778999999999999976543 455566 466666 3322211211 111 1 2689999
Q ss_pred EcCCCCcc-ccCCCHHHHHHHHHHHHHcCcEEEEcccccccc--cCCCCCcccccCCCcceeEEEecCCcccCCccceeE
Q 013521 220 FCSPNNPT-GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI--TDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLG 296 (441)
Q Consensus 220 i~~p~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~--~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G 296 (441)
+++||||| |.++|.+++++|+++|++||+++|+|++|.... +.+ .+...+....+ .++.|+||.++.+ +|
T Consensus 138 ~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~--~~~~~~~~~~d--~~~~s~sK~l~~~---~G 210 (347)
T 1jg8_A 138 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG--VPVKEYAGYAD--SVMFCLSKGLCAP---VG 210 (347)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHC--CCHHHHHHTCS--EEEEESSSTTCCS---SC
T ss_pred EeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcC--CChHHhccccc--EEEEecccccCCC---ce
Confidence 99999999 999999999999999999999999999875321 111 12222211123 3445899999743 57
Q ss_pred -EEEeeccccccCCchhHHHHHHHHhhhcCC--CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013521 297 -WTVVPEELRYSNGYPVIKDFNRIVCTCFNG--ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVN 373 (441)
Q Consensus 297 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 373 (441)
|+++++++ ++.+...+.....+ .+...+.++...++.. . +.+. +..++++.+.+.|+++|+.+.
T Consensus 211 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~---~~~~-~~~~~~~~l~~~L~~~~~~~~ 277 (347)
T 1jg8_A 211 SVVVGDRDF--------IERARKARKMLGGGMRQAGVLAAAGIIALTKM-V---DRLK-EDHENARFLALKLKEIGYSVN 277 (347)
T ss_dssp EEEEECHHH--------HHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS-S---TTHH-HHHHHHHHHHHHHHHHTCBCC
T ss_pred EEEEcCHHH--------HHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH-H---HHHH-HHHHHHHHHHHHHHhcCceec
Confidence 45666665 34444333322221 2334444444455321 1 1122 223466788888877776652
Q ss_pred -CCCCceEEEEEcC--CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 374 -GGKNAPYVWVQFP--GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 374 -~~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
.+..++|+|++++ +.+..++.++|.+ +||.+.|+. .+++|+++. .+++++++++++|+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~------~~~iRl~~~~~~~~e~i~~~~~~l~~~ 342 (347)
T 1jg8_A 278 PEDVKTNMVILRTDNLKVNAHGFIEALRN-SGVLANAVS------DTEIRLVTHKDVSRNDIEEALNIFEKL 342 (347)
T ss_dssp GGGCCSSEEEEECTTSSSCHHHHHHHHHH-HTEECEEEE------TTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCcceEEEEEcccccCCHHHHHHHHHH-CCCEEecCC------CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3457788999997 3456778888765 599999752 468999973 3899999999999875
No 121
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.97 E-value=6.6e-31 Score=258.05 Aligned_cols=329 Identities=17% Similarity=0.150 Sum_probs=224.1
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCc---CcHH--HHHHHH-HHHhhhCCCCCCcEEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQ---GNMA--LRTAIA-DKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~---g~~~--lr~~ia-~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
++++|+.|.+++ ++.+.+++.+.+.+ ....+|+... |... ++++++ +++.+.++.++++|++++|++
T Consensus 24 ~~i~~~~~~~~~--~~~v~~a~~~~~~~----~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~- 96 (407)
T 2dkj_A 24 EGLELIASENFV--SKQVREAVGSVLTN----KYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQ- 96 (407)
T ss_dssp TSEECCTTCCCC--CHHHHHHHTSGGGG----CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHH-
T ss_pred cceeeccCCCCC--CHHHHHHHHhhhhc----CcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHH-
Confidence 579999998766 78899999887753 1122343221 4433 444322 233333477777788888865
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhH---hHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C-CCcc
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYI---DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T-SRTD 216 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~-~~~~ 216 (441)
++.+ +..++++||+|++++|+|+++. ..+...|.. ...+.++++++ ++..+++. . .+++
T Consensus 97 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~ 165 (407)
T 2dkj_A 97 ANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKL----------YKVVSYGVRPD-TELIDLEEVRRLALEHRPK 165 (407)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHH----------SEEEEECCCTT-TSSCCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCce----------EEEEecCCCcc-cCccCHHHHHHHHhhcCCe
Confidence 8887 6667899999999999998883 444455520 13344433321 33334322 1 3789
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+|++++|+|| ...+ +++|.++|++||+++|+||+|+. +.+.+...+. +. ..++++.|+||.+ +|+|+
T Consensus 166 ~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~~---~~di~~~s~sK~l--~g~~~ 233 (407)
T 2dkj_A 166 VIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP--LP---YAHVVTSTTHKTL--RGPRG 233 (407)
T ss_dssp EEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC--TT---TCSEEEEESSGGG--CCCSC
T ss_pred EEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCCc--cc---cccEEEEeccccC--CCCCc
Confidence 9999999998 5566 89999999999999999999997 5444322221 11 2458999999965 68899
Q ss_pred EEEEee-ccccccCCchhHHHHHHHHhhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013521 296 GWTVVP-EELRYSNGYPVIKDFNRIVCTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVN 373 (441)
Q Consensus 296 G~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 373 (441)
||++++ +++ .+.+....... ..+.+.....++.+++......++++++++++++++++.+.|++.|+++.
T Consensus 234 G~~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 305 (407)
T 2dkj_A 234 GLILSNDPEL--------GKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIV 305 (407)
T ss_dssp EEEEESCHHH--------HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred eEEEECCHHH--------HHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 999998 566 34555443222 22334433334555554211256788899999999999999998888876
Q ss_pred C-CCCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCc----CCCCCCeEEEEee------cCHHHHHHHHHHHHhh
Q 013521 374 G-GKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGF----GPGGNEHIRVSAF------GHREYISEACRRLKNF 440 (441)
Q Consensus 374 ~-~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f----~~~~~~~iRls~~------~~~~~~~~~l~~l~~~ 440 (441)
. +..++++|++++. .+..++.+.+ .++||.+.+|..| .+..++++|+++. .+++++++++++|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 384 (407)
T 2dkj_A 306 TGGTDNHLFLVDLRPKGLTGKEAEERL-DAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRA 384 (407)
T ss_dssp GGSCSSSEEEEECGGGTCCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred cCCCCceEEEEECcccCCCHHHHHHHH-HHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHH
Confidence 4 3578899999973 3555666665 5569999999764 2334678999983 6899999999999875
No 122
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.97 E-value=5.9e-30 Score=247.01 Aligned_cols=324 Identities=12% Similarity=0.099 Sum_probs=224.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcHHHHHH-
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQSDISR- 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~~al~~- 150 (441)
+.+++.-|. .++|+.+.+++.+++.+.. .+..++ ..+..++.+.+.+++.+.++. ++++|++|+|+++++.+
T Consensus 4 ~~~~~~p~p--~~~~~~v~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~ 77 (362)
T 3ffr_A 4 NKIYFTPGP--SELYPTVRQHMITALDEKI--GVISHR--SKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERI 77 (362)
T ss_dssp CCEEECSSS--CCCCTTHHHHHHHHHHTTT--TTSCTT--SHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHH
T ss_pred cceeccCCC--cCCCHHHHHHHHHHhcCCc--cCcCCC--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHH
Confidence 356666553 4567888888888876411 011112 234445555555555554566 46899999999999998
Q ss_pred HHHhcCCCCEEEEeCCCchh-hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCCCCCccEEEEcCCCCccc
Q 013521 151 LQMLLGSNVTVAVQDPSFPA-YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LSTTSRTDIIFFCSPNNPTG 228 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~~~~~~~v~i~~p~NPtG 228 (441)
+..++++ +.+++..+.|.. +...+...| .+++.++.+.+..++++ ++..+++++|++++|+||||
T Consensus 78 ~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~v~~~~~~nptG 144 (362)
T 3ffr_A 78 IQNCVEK-KSFHCVNGSFSKRFYEFAGELG------------REAYKEEAAFGKGFYPADITVPADAEIICLTHNETSSG 144 (362)
T ss_dssp HHHHCSS-EEEEEECSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCGGGCCCCTTCCEEEEESEETTTT
T ss_pred HHhccCC-cEEEEcCcHHHHHHHHHHHHhC------------CCeEEEecCCCCCCCHHHHhccCCccEEEEEcCCCCcc
Confidence 6777777 555555556652 334555566 58888888654333222 33346899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHc-CcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC-CccceeEEEEeeccccc
Q 013521 229 HAATWQQLKKLVEFAKAN-GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG-FTGVRLGWTVVPEELRY 306 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~-~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~-~~G~r~G~l~~~~~~~~ 306 (441)
.+++ +++|+++|++| |+++|+|++|+.+.. +..+ . +.++++.|+||+++ .+| +|+++++++++
T Consensus 145 ~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~---~~~~---~---~~d~~~~s~~K~~~~~~G--~g~~~~~~~~~- 209 (362)
T 3ffr_A 145 VSMP---VEDINTFRDKNKDALIFVDAVSSLPYP---KFDW---T---KIDSVFFSVQKCFGLPAG--LGVWILNDRVI- 209 (362)
T ss_dssp EECC---HHHHTTSGGGSTTSEEEEECTTTTTSS---CCCT---T---SCSEEEEETTSTTCCCSC--CEEEEEEHHHH-
T ss_pred eeCC---HHHHHHHHHhCCCCEEEEecccccCCc---ccCh---h---HCcEEEEecccccCCCCc--eEEEEECHHHH-
Confidence 9999 88899999999 999999999885322 1111 1 13488999999998 666 67788888773
Q ss_pred cCCchhHHHHHHHHh---------------------hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 307 SNGYPVIKDFNRIVC---------------------TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
+.+..... ....+.+...+.++.++++......+++++++++++++.+.+.|
T Consensus 210 -------~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 282 (362)
T 3ffr_A 210 -------EKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYI 282 (362)
T ss_dssp -------HHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 33333221 11344566666666555541111225788899999999999999
Q ss_pred HhC-CCeeeCC----CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHH
Q 013521 366 QSL-GLKVNGG----KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLK 438 (441)
Q Consensus 366 ~~~-g~~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~ 438 (441)
+++ |+++..+ ..+.++|+.+++ +..++.+.|.++ ||.+.||..+ .++++|||++. .+++++++++++|+
T Consensus 283 ~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~-gi~~~~g~~~--~~~~~iRis~~~~~~~e~i~~l~~~l~ 358 (362)
T 3ffr_A 283 ESSKVFSFGVEDAKLRSMTTIVANTTM-LPGEINKILEPF-DMAVGAGYGS--KKETQIRIANFPAHSLEQVHKLVQTLK 358 (362)
T ss_dssp HHCSSEEESSSCGGGBCSSEEEEEESS-CHHHHHHHHGGG-TEEEEECSGG--GTTTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHccCceeccCChhhcCCceEEEecCC-CHHHHHHHHHHC-CeEEecCccc--cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 998 8887652 245678999887 677787887766 9999998543 34689999974 48899999999998
Q ss_pred hhC
Q 013521 439 NFL 441 (441)
Q Consensus 439 ~~l 441 (441)
+++
T Consensus 359 ~~~ 361 (362)
T 3ffr_A 359 EKI 361 (362)
T ss_dssp HHT
T ss_pred HHh
Confidence 864
No 123
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.97 E-value=1.2e-30 Score=254.64 Aligned_cols=315 Identities=14% Similarity=0.115 Sum_probs=222.1
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCCCC-cEEEcCCcHHHHHH-HHHhcCC
Q 013521 82 TTQPIPDIITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKDMGIEGD-EIFISDGAQSDISR-LQMLLGS 157 (441)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~-~I~~t~G~~~al~~-l~~l~~~ 157 (441)
.+.++++.+.+++.+.+ ..+|.+ .....++++.+++++ +.+.+ +|++|+|+++++.+ +..++++
T Consensus 30 ~p~~~~~~v~~a~~~~~--------~~~~~~~~~~~~~~l~~~la~~~----~~~~~~~v~~~~gg~~al~~~~~~~~~~ 97 (393)
T 3kgw_A 30 GPSNLAPRVLAAGSLRM--------IGHMQKEMLQIMEEIKQGIQYVF----QTRNPLTLVVSGSGHCAMETALFNLLEP 97 (393)
T ss_dssp SCCCCCHHHHHHTTCCC--------CCTTSHHHHHHHHHHHHHHHHHH----TCCCSEEEEESCCTTTHHHHHHHHHCCT
T ss_pred CCCCCCHHHHHHhcccc--------cCcccHHHHHHHHHHHHHHHHHh----CCCCCcEEEEeCCcHHHHHHHHHhcCCC
Confidence 34567788877776522 112222 223456666666665 66554 59999999999997 6777899
Q ss_pred CCEEEEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CC-CccEEEEcCCCCccccCC
Q 013521 158 NVTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TS-RTDIIFFCSPNNPTGHAA 231 (441)
Q Consensus 158 gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~-~~~~v~i~~p~NPtG~~~ 231 (441)
||+|+++.++|.+. ...+...| .+++.++.+.++.++++ +++ .. ++++|++++||||||.++
T Consensus 98 gd~vl~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~ 165 (393)
T 3kgw_A 98 GDSFLTGTNGIWGMRAAEIADRIG------------ARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQ 165 (393)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT------------CEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEEC
T ss_pred CCEEEEEeCCchhHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhc
Confidence 99999999998643 55666677 58888888765433222 211 23 799999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCch
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYP 311 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~ 311 (441)
+ +++|.++|++||+++|+||+|+.... +..+. ..+.++++.|+||+++ ++.++||++++++++
T Consensus 166 ~---l~~i~~l~~~~~~~li~De~~~~g~~---~~~~~----~~~~d~~~~s~sK~~~-~~~g~g~~~~~~~~~------ 228 (393)
T 3kgw_A 166 P---LDGFGELCHRYQCLLLVDSVASLGGV---PIYMD----QQGIDIMYSSSQKVLN-APPGISLISFNDKAK------ 228 (393)
T ss_dssp C---CTTHHHHHHHTTCEEEEECTTTTTTS---CCCTT----TTTCCEEEEESSSTTC-CCSSCEEEEECHHHH------
T ss_pred c---HHHHHHHHHHcCCEEEEECCccccCc---ccchh----hcCCCEEEecCccccc-CCCceeEEEECHHHH------
Confidence 9 88999999999999999999873211 11111 1234588999999874 455699999988773
Q ss_pred hHHHHHHHHh-----------------------hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 312 VIKDFNRIVC-----------------------TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 312 ~~~~~~~~~~-----------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+.+..... ....+.+...+.++.+++......++++++++++++++.+.+.|+++
T Consensus 229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 306 (393)
T 3kgw_A 229 --YKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM 306 (393)
T ss_dssp --HHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --HHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 33322110 11223566666666666642222346888999999999999999998
Q ss_pred CCeeeCCC----CceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe-e--cCHHHHHHHHHHHHhh
Q 013521 369 GLKVNGGK----NAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA-F--GHREYISEACRRLKNF 440 (441)
Q Consensus 369 g~~~~~~~----~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~-~--~~~~~~~~~l~~l~~~ 440 (441)
|+++..+. .+.++|+.++ +.+..++.+.+++++||.+.+|..+. .++++|+++ . .+++++++++++|+++
T Consensus 307 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~i~~~~~~l~~~ 384 (393)
T 3kgw_A 307 GLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPT--EERVLRIGLLGYNATTENVDRVAEALREA 384 (393)
T ss_dssp TCCBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCCHHHHHHHHHHHHHH
T ss_pred CCeeccCChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccC--CCCEEEEEecccCCCHHHHHHHHHHHHHH
Confidence 88776332 2567789987 45667788888776799999987543 467999997 4 3899999999999876
Q ss_pred C
Q 013521 441 L 441 (441)
Q Consensus 441 l 441 (441)
+
T Consensus 385 l 385 (393)
T 3kgw_A 385 L 385 (393)
T ss_dssp H
T ss_pred H
Confidence 3
No 124
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.97 E-value=4.5e-31 Score=253.85 Aligned_cols=318 Identities=13% Similarity=0.098 Sum_probs=219.6
Q ss_pred CCCCcHHHHHHHHHHHhhccCCCCCCCCC-CCcCcHHHHHHHHHHHhhhCCCC--CCcEEEcCCcHHHHHHH-HHhcCCC
Q 013521 83 TQPIPDIITSAMAEHAFALSTVKGYKGYG-AEQGNMALRTAIADKFYKDMGIE--GDEIFISDGAQSDISRL-QMLLGSN 158 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~--~~~I~~t~G~~~al~~l-~~l~~~g 158 (441)
+.++|+.+.+++.+.+.. +.|. ...+..++|+.+++++ +++ +++|++|+|+++++.++ ..+++
T Consensus 8 p~~~~~~v~~a~~~~~~~-------~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~t~g~t~a~~~~~~~~~~-- 74 (353)
T 2yrr_A 8 PTPIPERVQKALLRPMRG-------HLDPEVLRVNRAIQERLAALF----DPGEGALVAALAGSGSLGMEAGLANLDR-- 74 (353)
T ss_dssp SCCCCHHHHGGGGSCCCC-------TTCHHHHHHHHHHHHHHHHHH----CCCTTCEEEEESSCHHHHHHHHHHTCSC--
T ss_pred CCCCCHHHHHHHhccccc-------ccCHHHHHHHHHHHHHHHHHh----CCCCCCceEEEcCCcHHHHHHHHHHhcC--
Confidence 356778888887765431 1221 1245788899999887 554 78999999999999984 45555
Q ss_pred CEEEEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CC-CccEEEEcCCCCccccCCC
Q 013521 159 VTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TS-RTDIIFFCSPNNPTGHAAT 232 (441)
Q Consensus 159 d~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~-~~~~v~i~~p~NPtG~~~~ 232 (441)
|+|++++|+|+++ ...+...| .+++.++.++++.++++ +++ .+ ++++|++++|+||||.+++
T Consensus 75 d~vl~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 142 (353)
T 2yrr_A 75 GPVLVLVNGAFSQRVAEMAALHG------------LDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP 142 (353)
T ss_dssp CCEEEEECSHHHHHHHHHHHHTT------------CCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC
T ss_pred CcEEEEcCCCchHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC
Confidence 8999999999985 34445566 58888998754322221 111 13 7899999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC-CccceeEEEEeeccccccCC--
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG-FTGVRLGWTVVPEELRYSNG-- 309 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~-~~G~r~G~l~~~~~~~~~~~-- 309 (441)
+++|.++|++||+++|+|++|+.. ..+.++..+ +..+++.|++|+++ .+| +||++++++++..-.
T Consensus 143 ---~~~i~~l~~~~~~~li~D~a~~~~---~~~~~~~~~----~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~l~~~ 210 (353)
T 2yrr_A 143 ---AEAIGALAKEAGALFFLDAVTTLG---MLPFSMRAM----GVDYAFTGSQKCLSAPPG--LAPIAASLEARKAFTGK 210 (353)
T ss_dssp ---HHHHHHHHHHHTCEEEEECTTTTT---TSCCCHHHH----TCSEEECCTTSTTCCCSS--CEEEEECHHHHHHCCCC
T ss_pred ---HHHHHHHHHHcCCeEEEEcCcccc---ccccccccc----CceEEEecCcccccCCCc--eEEEEECHHHHHHhccC
Confidence 779999999999999999999632 113333333 23488999999654 345 799999988742100
Q ss_pred chh---HHHHHHHH--hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC--CceEEE
Q 013521 310 YPV---IKDFNRIV--CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK--NAPYVW 382 (441)
Q Consensus 310 ~~~---~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--~~~~~~ 382 (441)
... ...+.... .....+.+...+.++.++++......+++++++++++++++.+.|++.|+++..+. .++++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~ 290 (353)
T 2yrr_A 211 RGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLV 290 (353)
T ss_dssp SCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEE
T ss_pred CCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEE
Confidence 000 00011111 11223456666666556654211122678889999999999999988888876543 566778
Q ss_pred EEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHH-HHHHHHHhh
Q 013521 383 VQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYIS-EACRRLKNF 440 (441)
Q Consensus 383 ~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~-~~l~~l~~~ 440 (441)
++++ +.+..++.+.+.++ ||.+.||..|. .++++|+++. .++++++ +++++|+++
T Consensus 291 ~~~~~~~~~~~~~~~l~~~-gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~~~~l~~~ 349 (353)
T 2yrr_A 291 VRPPEGVDADRLVRALYAE-GVAVAGGIGPT--RGQVLRLGLMGEGARREAYQAFLKALDRA 349 (353)
T ss_dssp EECCTTCCHHHHHHHHHHT-TEECEECCGGG--TTTCEEEECSGGGSCHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHC-CEEEeCCcccc--CCCeEEEecCccCCHHHHHHHHHHHHHHH
Confidence 9996 45667777777765 99999998664 3578999982 4778888 999999875
No 125
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.97 E-value=1e-30 Score=252.27 Aligned_cols=312 Identities=14% Similarity=0.098 Sum_probs=203.3
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCC--EEEEeCCCc
Q 013521 92 SAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNV--TVAVQDPSF 168 (441)
Q Consensus 92 ~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd--~Vlv~~p~y 168 (441)
+++++.+..+........|++..+..+|++++|+++ +.+ +.|++ +|+++++.+ +..++.+|| .|+++.+.|
T Consensus 25 ~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~----~~~-~~i~~-~~G~~a~~~al~~~~~~gd~~~vi~~~~~~ 98 (357)
T 3lws_A 25 GVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVL----GMD-DAVFF-PSGTMAQQVALRIWSDETDNRTVAYHPLCH 98 (357)
T ss_dssp HHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHH----TCS-EEEEE-SCHHHHHHHHHHHHHHHHTCCEEEECTTCH
T ss_pred HHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHh----CCC-cEEEe-cCcHHHHHHHHHHHhhcCCCcEEEecccce
Confidence 444444443221123346877778999999999997 542 34555 555667776 677778888 677777776
Q ss_pred hhhHh---HHHHhccccccccccCccceeEEeecCCCCCccC-CCCCCCCccEEEEcCCCCcc-ccCCCHHHHHHHHHHH
Q 013521 169 PAYID---TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFP-DLSTTSRTDIIFFCSPNNPT-GHAATWQQLKKLVEFA 243 (441)
Q Consensus 169 ~~~~~---~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~~~~~~~v~i~~p~NPt-G~~~~~~~~~~i~~~a 243 (441)
+.... .....| .+++.++.+. +.+++ ++++..+++++++++||||| |.+++.+++++|+++|
T Consensus 99 ~~~~~~~~~~~~~g------------~~~~~v~~~~-~~~d~~~l~~~~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~ 165 (357)
T 3lws_A 99 LEIHEQDGLKELHP------------IETILVGAAD-RLMTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYC 165 (357)
T ss_dssp HHHSSTTHHHHHSS------------CEEEECSCTT-SCCCHHHHHTCCSCSEEEEESSBGGGTSBCCCHHHHHHHHHHH
T ss_pred eeeeccchhhhccC------------cEEEEecCCC-CCcCHHHHhcCcCcceEEEEcccccCCceeCCHHHHHHHHHHH
Confidence 65544 233345 4677776422 22221 12233458999999999998 9999999999999999
Q ss_pred HHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhh
Q 013521 244 KANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTC 323 (441)
Q Consensus 244 ~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (441)
++||++||+|++|..........+...+....+ +++.|+||.++.++ .||+++++++ ++.+...+...
T Consensus 166 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~~~~~~--gg~~~~~~~~--------~~~~~~~~~~~ 233 (357)
T 3lws_A 166 RERGIRLHLDGARLFEMLPYYEKTAAEIAGLFD--SIYISFYKGLGGIA--GAILAGPAAF--------CQTARIWKRRY 233 (357)
T ss_dssp HHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSS--EEEEESSSTTCCSS--CEEEEECHHH--------HHHHHHHHHHT
T ss_pred HHcCCEEEEECchhhhhhhhcCCChHHHHhcCC--EEEEeccccCCCCc--eEEEEcCHHH--------HHHHHHHHHHh
Confidence 999999999999862111100122222222223 44789999994233 2999998877 34554443322
Q ss_pred cCC--CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCee-eCCCCceEEEEEcCCC--C-hHHHHHH
Q 013521 324 FNG--ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKV-NGGKNAPYVWVQFPGS--S-SWDVFAE 396 (441)
Q Consensus 324 ~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~~~~--~-~~~~~~~ 396 (441)
... .....+.++.+.+++ +.+. .+.++++++.+.+.|+++ |+++ ..+++++|+|++++.. . ..++.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~----~~~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (357)
T 3lws_A 234 GGDLISLYPYIVSADYYYEL----RKDR-MGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQV 308 (357)
T ss_dssp TCCCSCCHHHHHHHHHHHHH----HTTC-HHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHH
T ss_pred cCCcccchHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHH
Confidence 211 223334444444432 2233 344677888999999988 8887 3567899999999743 2 3445555
Q ss_pred HHHhcCeEEeCCCCcCCCCCCeEEEEee-----cCHHHHHHHHHHHHhhC
Q 013521 397 ILEKTHILTIPGSGFGPGGNEHIRVSAF-----GHREYISEACRRLKNFL 441 (441)
Q Consensus 397 ll~~~gi~v~pg~~f~~~~~~~iRls~~-----~~~~~~~~~l~~l~~~l 441 (441)
++++||.+.||..|. .+..++|+++. .+++++++++++|.+++
T Consensus 309 -l~~~Gi~v~~g~~~~-~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 309 -QEETGLGFVGYLVDK-DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp -HHHHCEESCSCCEEC-SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred -HHhcCeEEecccccC-CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 455699999997665 35569999864 37899999999998875
No 126
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.97 E-value=4e-30 Score=251.88 Aligned_cols=320 Identities=13% Similarity=0.097 Sum_probs=218.2
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC--CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HH
Q 013521 76 RLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG--AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQ 152 (441)
Q Consensus 76 ~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~ 152 (441)
.+++++|+++.++.+.+++.+++..+........|+ +.....++++.+++++ +.+ +.|++++ +++++.+ +.
T Consensus 24 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~-~~i~~~s-G~~a~~~~l~ 97 (398)
T 2rfv_A 24 TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLE----RGE-AGLATAS-GISAITTTLL 97 (398)
T ss_dssp TCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHH----TCS-EEEEESS-HHHHHHHHHH
T ss_pred CCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHh----CCC-cEEEECC-HHHHHHHHHH
Confidence 578888888877776666666665222112222333 4556778888888876 554 4555555 5589887 67
Q ss_pred HhcCCCCEEEEeCCCchhhHhHH----HHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccc
Q 013521 153 MLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTG 228 (441)
Q Consensus 153 ~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG 228 (441)
.++++||.|+++.|+|+++...+ ...| .+++.++.++-+.+...+ .+++++|++++|+||||
T Consensus 98 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG 163 (398)
T 2rfv_A 98 TLCQQGDHIVSASAIYGCTHAFLSHSMPKFG------------INVRFVDAAKPEEIRAAM--RPETKVVYIETPANPTL 163 (398)
T ss_dssp HHCCTTCEEEEESSSCHHHHHHHHTHHHHTT------------CEEEEECTTSHHHHHHHC--CTTEEEEEEESSBTTTT
T ss_pred HHhCCCCEEEEcCCCcccHHHHHHHHHHHcC------------CEEEEeCCCCHHHHHHhc--CCCCeEEEEECCCCCCC
Confidence 77899999999999999987766 5566 478888764211111111 25789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee-EEEEeecccccc
Q 013521 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPEELRYS 307 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~~~~ 307 (441)
.+++ +++|+++|++||+++|+||+|..+.+.. ++ .+ +.++++.|+||.++.+|+|+ ||++++++++
T Consensus 164 ~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~---~~-~~----~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~-- 230 (398)
T 2rfv_A 164 SLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ---PL-QL----GADIVVHSVTKYINGHGDVIGGIIVGKQEFI-- 230 (398)
T ss_dssp BCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC---GG-GG----TCSEEEEETTTTTTCSSCCCCEEEEECHHHH--
T ss_pred cccC---HHHHHHHHHHcCCEEEEECCCcccccCC---ch-hh----CCcEEEEeCcccccCCCCceEEEEEECHHHH--
Confidence 9998 8999999999999999999999765431 11 22 35699999999998899998 9999998774
Q ss_pred CCchhHHHHHHHHhhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC---------------Ce
Q 013521 308 NGYPVIKDFNRIVCTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG---------------LK 371 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------------~~ 371 (441)
.+.+....... ..+.+++.+.++.+.++. . ....+...++.+.+.+.|++++ +.
T Consensus 231 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~---~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~ 300 (398)
T 2rfv_A 231 -----DQARFVGLKDITGGCMSPFNAWLTLRGVKT--L---GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300 (398)
T ss_dssp -----HHHHHTHHHHTTCCCCCHHHHHHHHHHHTT--H---HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHH
T ss_pred -----HHHHHHHHHhCCCCCCCHHHHHHHHhhhhh--H---HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHH
Confidence 11344333333 445788888888888863 1 2333445566777777776542 22
Q ss_pred eeCC---CCceEEEEEcCCCChHHHHHHHHHhc---CeEEeCCCCcC---------------------CCCCCeEEEEee
Q 013521 372 VNGG---KNAPYVWVQFPGSSSWDVFAEILEKT---HILTIPGSGFG---------------------PGGNEHIRVSAF 424 (441)
Q Consensus 372 ~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~---gi~v~pg~~f~---------------------~~~~~~iRls~~ 424 (441)
+..+ ..+.++++++++. .+....++++. |+.+.+|+.|. ...+++||||++
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~--~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~ 378 (398)
T 2rfv_A 301 LGQRQMSLPGGIISFEIAGG--LEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG 378 (398)
T ss_dssp HHHHHCSSCCSEEEEEETTH--HHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECC
T ss_pred HHHhhCCCCceEEEEEEcCC--HHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEec
Confidence 2111 2467778888742 23334444443 88888887652 012689999984
Q ss_pred c--CHHHHHHHHHHHHhh
Q 013521 425 G--HREYISEACRRLKNF 440 (441)
Q Consensus 425 ~--~~~~~~~~l~~l~~~ 440 (441)
. ++++++.+++.|+++
T Consensus 379 ~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 379 LEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp SSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 4 578899998888764
No 127
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.97 E-value=7.1e-31 Score=256.94 Aligned_cols=334 Identities=13% Similarity=0.117 Sum_probs=224.2
Q ss_pred CCCeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++|++.+. .++. .|+.+.+++.+.+..... ....| +.....++++.+++++ ++++++|++|+|++++
T Consensus 44 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----~~~~~~v~~~~gg~~a 116 (395)
T 1vef_A 44 GNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA--MPQTL-PTPMRGEFYRTLTAIL----PPELNRVFPVNSGTEA 116 (395)
T ss_dssp SCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC--CCTTS-CCHHHHHHHHHHHHTS----CTTEEEEEEESSHHHH
T ss_pred CCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCC--Ccccc-CCHHHHHHHHHHHHhc----CCCcCEEEEcCcHHHH
Confidence 34688998775 3443 789999999999876431 11234 4455677777777764 6778999999999999
Q ss_pred HHH-HHHhc--CCCCEEEEeCCCchhhH-hHHHHhccccc---cccccCccceeEEeecCCCCCccCCCCC--CCCccEE
Q 013521 148 ISR-LQMLL--GSNVTVAVQDPSFPAYI-DTSVIVGQAGK---FLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDII 218 (441)
Q Consensus 148 l~~-l~~l~--~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v 218 (441)
+.+ +..+. .+||.|++.+|+|++.. ..+...|.+.. +.+.. .++..++..+ ..++++ .+++++|
T Consensus 117 ~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~---~~~~~~~~~d----~~~l~~~i~~~~~~v 189 (395)
T 1vef_A 117 NEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLV---EPVEFIPYND----VEALKRAVDEETAAV 189 (395)
T ss_dssp HHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCS---SCEEEECTTC----HHHHHHHCCTTEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCC---CCeeEeCCCc----HHHHHHHhccCEEEE
Confidence 997 44442 67899999999997654 35555553211 00000 1233333211 111111 2568887
Q ss_pred EEcCCCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
+++.++||||.++ +.+++++|+++|++||+++|+||+|.++...+.+.++....-.++ ++ ||||.++ +|+|+||
T Consensus 190 ~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d--~~--s~sK~~~-~g~~~G~ 264 (395)
T 1vef_A 190 ILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD--IL--TLAKALG-GGVPLGV 264 (395)
T ss_dssp EECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS--EE--EECGGGG-TTSSCEE
T ss_pred EEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCC--EE--EEccccc-CCCceEE
Confidence 7655589999875 688899999999999999999999997654432222222211223 22 8899998 5999999
Q ss_pred EEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCee--eCC
Q 013521 298 TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKV--NGG 375 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~ 375 (441)
++++++++ +.+.........+.+.+.+.++.++++.. .. +...++++++++++.+.|++.+... ..+
T Consensus 265 ~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~a~~~al~~~--~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 333 (395)
T 1vef_A 265 AVMREEVA--------RSMPKGGHGTTFGGNPLAMAAGVAAIRYL--ER-TRLWERAAELGPWFMEKLRAIPSPKIREVR 333 (395)
T ss_dssp EEEEHHHH--------HTSCTTSSCCSSTTCHHHHHHHHHHHHHH--HH-HTTHHHHHHHHHHHHHHHHTSCCTTEEEEE
T ss_pred EEehHHHH--------hhhccCCcCCCcCCCHHHHHHHHHHHHHH--Hh-CCHHHHHHHHHHHHHHHHHHhhcCceEEEE
Confidence 99998763 22221111223346788888777777521 11 4567888889999999998875321 122
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 376 KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
..|+++|++++. ...++.+.+++++||.+.|+ +++++||++ ..+++++++++++|++++
T Consensus 334 ~~g~~~~~~~~~-~~~~l~~~l~~~~gi~v~~~------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 334 GMGLMVGLELKE-KAAPYIARLEKEHRVLALQA------GPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp EETTEEEEEESS-CSHHHHHHHHHHHCEECEES------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEcC-hHHHHHHHHHHHCCeEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 467899999974 36678888773559999985 367999986 458999999999998763
No 128
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.97 E-value=9.4e-30 Score=247.16 Aligned_cols=323 Identities=12% Similarity=0.038 Sum_probs=215.5
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC-c-EEEcCCcHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD-E-IFISDGAQSDISR 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~-I~~t~G~~~al~~ 150 (441)
..++|+-|. .++|+.+.+++.+.+. .+|. .+..++.+++++++.+.++++++ + +++|+|+++++.+
T Consensus 19 ~~~~~~pgp--~~~~~~v~~a~~~~~~--------~~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~ 86 (376)
T 3f0h_A 19 GMLNFTVGP--VMSSEEVRAIGAEQVP--------YFRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEA 86 (376)
T ss_dssp SCEECSSSS--CCCCHHHHHHHTSCCC--------CCSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHH
T ss_pred CceeecCCC--CCCcHHHHHHhcCCCC--------CCCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHH
Confidence 356666653 4677888888766331 1232 23445556666665554466542 4 4559999999997
Q ss_pred -HHHhcCCCCEEEEeCCCchhhH--hHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCC
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPN 224 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~ 224 (441)
+..++++||+|++++|+|.+.. ..+...| .+++.++.+.+..++++ +++ .++++++++++|+
T Consensus 87 ~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~ 154 (376)
T 3f0h_A 87 VVMNCFTKKDKVLVIDGGSFGHRFVQLCEIHE------------IPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDE 154 (376)
T ss_dssp HHHHHCCTTCCEEEEESSHHHHHHHHHHHHTT------------CCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEE
T ss_pred HHHhccCCCCeEEEEeCChhhHHHHHHHHHcC------------CceEEEeCCCCCCCCHHHHHHhhccCceEEEEeccc
Confidence 6778899999999999887754 2344445 47888888654333222 222 3688999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
||||.++| +++|+++|++||+++|+|++++.+.. +..+... +.++++.|+||+++ ++.++|++++++++
T Consensus 155 nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~---~~~~~~~----~~d~~~~s~~K~l~-~~~G~g~~~~~~~~ 223 (376)
T 3f0h_A 155 TSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLAD---PFNMNEC----GADVMITGSQKVLA-CPPGISVIVLAPRG 223 (376)
T ss_dssp TTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCSEEEEETTTTTC-CCSSCEEEEECHHH
T ss_pred CCcceecC---HHHHHHHHHHcCCEEEEEcCccccCc---ccccccc----CccEEEecCccccc-CCCceEEEEECHHH
Confidence 99999999 99999999999999999999885332 2222222 23589999999998 33347888888876
Q ss_pred cccCCchhHHHHHHHH-----------------hhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHH
Q 013521 305 RYSNGYPVIKDFNRIV-----------------CTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~ 366 (441)
+ +.+.... .....+.+...+.++.+.+...... .+++++++++++++.+.+.|+
T Consensus 224 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 295 (376)
T 3f0h_A 224 V--------ERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIK 295 (376)
T ss_dssp H--------HHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred H--------HHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3 2222100 0112234443333333333311111 367888899999999999999
Q ss_pred hCCCeeeCCCCceEE-EEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 367 SLGLKVNGGKNAPYV-WVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 367 ~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
++++++..+.....+ ++..++.+..++.+.+++++||.+.||. +....+++||++ ..+++++++++++|+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~--~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~ 370 (376)
T 3f0h_A 296 DLPFELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPNG--GEMKDTIFRVGHIGALTHEDNTTLVNAFKDL 370 (376)
T ss_dssp TSSEEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEECC--GGGTTTCEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred HcCCccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecCc--cccCCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 888777654333332 2333455677788887776699999984 333568999997 35899999999999875
No 129
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.97 E-value=5.5e-30 Score=249.42 Aligned_cols=329 Identities=13% Similarity=0.057 Sum_probs=224.2
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCC--cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAE--QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.+.|..|. .+.++.+.+++.+... .+|.+. ....++++.+++++....++++++|++|+|+++++.+
T Consensus 5 ~~~~~~p~p--~~~~~~v~~a~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~ 74 (385)
T 2bkw_A 5 VDTLLIPGP--IILSGAVQKALDVPSL--------GHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDI 74 (385)
T ss_dssp CCEECSSSS--CCCCHHHHHTTSCCCC--------CTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHH
T ss_pred cceeecCCC--cCchHHHHHHHhcccc--------ccCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHH
Confidence 346666553 4466777777655321 123221 2467788999998865556678999999999999998
Q ss_pred -HHHhc---CCCCEEEEe-CCCchhhH-hHHHHhccccccccccCccceeEEeec-CCCCCccCCCCC-----C-CCccE
Q 013521 151 -LQMLL---GSNVTVAVQ-DPSFPAYI-DTSVIVGQAGKFLKETGKYRNIVYMNC-RPENNFFPDLST-----T-SRTDI 217 (441)
Q Consensus 151 -l~~l~---~~gd~Vlv~-~p~y~~~~-~~~~~~g~~~~~~~~~~~~~~v~~v~~-~~~~~~~~~~~~-----~-~~~~~ 217 (441)
+..+. ++||+|++. .|.|+... ..+...| .+++.++. +.++ ..|++. . .++++
T Consensus 75 ~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~~~--~~d~~~l~~~l~~~~~~~ 140 (385)
T 2bkw_A 75 FASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYG------------AQVDVVRPLKIGE--SVPLELITEKLSQNSYGA 140 (385)
T ss_dssp HHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTT------------CEEEEECCSSTTS--CCCHHHHHHHHHHSCCSE
T ss_pred HHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcC------------CceEEEecCCCCC--CCCHHHHHHHHhcCCCCE
Confidence 56666 899999887 55665553 5566667 58888888 5432 233221 1 37899
Q ss_pred EEEcCCCCccccCCCHHHHHHHHHHHHHc--CcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC-Cccce
Q 013521 218 IFFCSPNNPTGHAATWQQLKKLVEFAKAN--GSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG-FTGVR 294 (441)
Q Consensus 218 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~--~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~-~~G~r 294 (441)
|++++|+||||.+++ +++|+++|++| |++||+|++|+... .+.++..+ +.++++.|+||+++ .+|
T Consensus 141 v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~---~~~~~~~~----~~d~~~~s~~K~~~~~~G-- 208 (385)
T 2bkw_A 141 VTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGC---EEFEFDEW----GVDFALTASQKAIGAPAG-- 208 (385)
T ss_dssp EEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTT---SCCCTTTT----TCSEEEEESSSTTCCCSC--
T ss_pred EEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCC---cccccccc----CceEEEecCccccccCCc--
Confidence 999999999999999 77999999999 99999999997321 12222222 34589999999664 455
Q ss_pred eEEEEeeccccc-cCCc--------------hhHHHHHHHHhh---hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013521 295 LGWTVVPEELRY-SNGY--------------PVIKDFNRIVCT---CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKE 356 (441)
Q Consensus 295 ~G~l~~~~~~~~-~~~~--------------~~~~~~~~~~~~---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 356 (441)
+||++++++.+. .-.. ............ ...+.+...+.++.++++......+++.++++++
T Consensus 209 ~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 288 (385)
T 2bkw_A 209 LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHRE 288 (385)
T ss_dssp EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 699999887642 1000 000000111111 0134566666666666642111125778899999
Q ss_pred HHHHHHHHH-HhCCCeeeCC-----CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE-ee-----
Q 013521 357 NAKIIVDAF-QSLGLKVNGG-----KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS-AF----- 424 (441)
Q Consensus 357 ~~~~l~~~L-~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls-~~----- 424 (441)
+++++.+.| +++|+++..+ ..++++|+.+++ ..++.+.|. ++||.+.+|..|. ...+++||+ +.
T Consensus 289 ~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~-~~gi~v~~g~~~~-~~~~~iRis~~~~~~~~ 364 (385)
T 2bkw_A 289 MSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD--PPDVIAFLK-SHGVVIAGGIHKD-IGPKYIRIGHMGVTACN 364 (385)
T ss_dssp HHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC--HHHHHHHHH-HTTEECBCCCCTT-TGGGEEEECCCGGGTSS
T ss_pred HHHHHHHHHHHhcCceecccCcccccCCceEEEecCC--HHHHHHHHH-HCCeEEeCCCCcc-cCCCEEEEEcccccccc
Confidence 999999999 8778877643 257889999974 566777765 4699999987653 246799999 65
Q ss_pred cCHHHHHHHHHHHHhhC
Q 013521 425 GHREYISEACRRLKNFL 441 (441)
Q Consensus 425 ~~~~~~~~~l~~l~~~l 441 (441)
.+++++++++++|++++
T Consensus 365 ~~~e~i~~~~~~l~~~~ 381 (385)
T 2bkw_A 365 KNLPYMKNCFDLIKLAL 381 (385)
T ss_dssp TTCTHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 48899999999998864
No 130
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.97 E-value=8.6e-31 Score=252.93 Aligned_cols=326 Identities=14% Similarity=0.052 Sum_probs=217.2
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
.....++.++++.++++.+.+++.+.+ ....|++..+..++++.+++++ +.+. . ++++|+++++.+
T Consensus 13 ~~~~~~~~~~~~~g~~p~v~~ai~~~~-------~~~~~~~~~~~~~l~~~la~~~----~~~~-~-i~~~~g~~a~~~a 79 (359)
T 3pj0_A 13 TPYKLGGNGPRNVGVLTEALQNIDDNL-------ESDIYGNGAVIEDFETKIAKIL----GKQS-A-VFFPSGTMAQQIA 79 (359)
T ss_dssp CSEESSSSSCCBHHHHHHHTTTSCTTC-------BCCBTTBSHHHHHHHHHHHHHH----TCSE-E-EEESCHHHHHHHH
T ss_pred cchhhcCCCccccCCCHHHHHHHHhhc-------ccCcccCCHHHHHHHHHHHHHh----CCCc-E-EEeCCHHHHHHHH
Confidence 356777777777767788887777732 2235767788999999999997 5433 3 444667778876
Q ss_pred HHHhcCCCCE--EEEeCCCchhhHhH---HHHhccccccccccCccceeEEeecCCCCCccCC-CCC-CCCccEEEEcCC
Q 013521 151 LQMLLGSNVT--VAVQDPSFPAYIDT---SVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST-TSRTDIIFFCSP 223 (441)
Q Consensus 151 l~~l~~~gd~--Vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~-~~~~~~v~i~~p 223 (441)
+..++.+||. |+++.+.|...... ....| .+++.++.+. ..++++ +++ .+++++|++++|
T Consensus 80 ~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~-~~~d~~~l~~~~~~~~~v~~~~p 146 (359)
T 3pj0_A 80 LRIWADRKENRRVAYHPLSHLEIHEQDGLKELQQ------------ITPLLLGTAN-QLLTIDDIKSLREPVSSVLIELP 146 (359)
T ss_dssp HHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHHC------------CEEEECSCTT-SCCCHHHHHTCSSCCSEEEEESS
T ss_pred HHHHHhcCCCcEEEEeccceeeehhcchHHHhcC------------ceEEecCCcC-CCcCHHHHHhccCCceEEEEEec
Confidence 6677788876 55555665544322 23456 4777777632 222211 211 468999999999
Q ss_pred CCcc-ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeec
Q 013521 224 NNPT-GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 224 ~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~ 302 (441)
|||| |.+++.+++++|+++|++||++||+|++|..+.......+...+....+ +++.||||.++.+ .+ ||++.++
T Consensus 147 ~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d--~~~~s~sK~~~~~-~g-g~~~~~~ 222 (359)
T 3pj0_A 147 QREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFD--SVYVSFYKGIGGI-AG-AILAGND 222 (359)
T ss_dssp BGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCS--EEEEESSSTTCCS-SC-EEEEECH
T ss_pred ccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCC--EEEEeccccCCCc-ce-EEEECCH
Confidence 9998 7999999999999999999999999999875432111112222211122 5566899998744 33 8888887
Q ss_pred cccccCCchhHHHHHHHHhhhcCC--CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee-CCCCc
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCFNG--ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVN-GGKNA 378 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~ 378 (441)
++ ++.+...+...... .....+.++...+++ +. +..++++++++.+.+.|+++ |+++. .++.+
T Consensus 223 ~l--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 289 (359)
T 3pj0_A 223 DF--------VQEAKIWKRRYGGDLISLYPYILSADYYFEK----RI-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVS 289 (359)
T ss_dssp HH--------HHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH----HG-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSS
T ss_pred HH--------HHHHHHHHHHhCCCcchhHHHHHHHHHHHHH----HH-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcc
Confidence 77 45555433322211 122333333333321 12 33445778889999999998 88885 45688
Q ss_pred eEEEEEcCCC---ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee-----cCHHHHHHHHHHHHhhC
Q 013521 379 PYVWVQFPGS---SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF-----GHREYISEACRRLKNFL 441 (441)
Q Consensus 379 ~~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~-----~~~~~~~~~l~~l~~~l 441 (441)
+++|++++.. +..++.+.+ .++||.+.||..|+..+.+++|+++. .+.+++++++++|.+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~l-~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~l 359 (359)
T 3pj0_A 290 NMFHVYFENSADEIGAILTKIQ-DETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKEL 359 (359)
T ss_dssp SEEEEEESSCHHHHHHHHHHHH-HHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred eEEEEEecCccchhHHHHHHHH-HhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhcC
Confidence 8999988632 233454554 55699999998887666789999874 37899999999999865
No 131
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=9.7e-30 Score=250.86 Aligned_cols=330 Identities=13% Similarity=0.118 Sum_probs=218.1
Q ss_pred CCCeEEeCCCCC--CCC-C-cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcH
Q 013521 71 DARLIRLGIGDT--TQP-I-PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQ 145 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~-~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~ 145 (441)
+..++|++.+.+ ++. . ++.+.+++.+.+..... .....| +.....++++.++++ ++++ +++|++|+|++
T Consensus 41 g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~-~~~~~~-~~~~~~~l~~~la~~----~~~~~~~~v~~~~gg~ 114 (419)
T 2eo5_A 41 GNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAH-AAANDF-YNIPQLELAKKLVTY----SPGNFQKKVFFSNSGT 114 (419)
T ss_dssp SCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCC-CSCSCS-CCHHHHHHHHHHHHH----SSCSSCEEEEEESSHH
T ss_pred CCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcc-cccccc-CCHHHHHHHHHHHHh----CCCCcCCEEEEeCchH
Confidence 456899988873 332 3 79999999998865321 111224 233345555555555 4776 78999999999
Q ss_pred HHHHH-HHHhcC-CCCEEEEeCCCchhhHhHHHHh-ccc----cccccccCccceeEEeecCCCCCc-------------
Q 013521 146 SDISR-LQMLLG-SNVTVAVQDPSFPAYIDTSVIV-GQA----GKFLKETGKYRNIVYMNCRPENNF------------- 205 (441)
Q Consensus 146 ~al~~-l~~l~~-~gd~Vlv~~p~y~~~~~~~~~~-g~~----~~~~~~~~~~~~v~~v~~~~~~~~------------- 205 (441)
+++.+ +..+.. +||.|++.+|+|+++....... |.. ..+... ..+++.++.+.....
T Consensus 115 ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~g~~~~~~~~~~ 191 (419)
T 2eo5_A 115 EAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPF---MPGVIHVPYPNPYRNPWHINGYENPSEL 191 (419)
T ss_dssp HHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCC---CTTEEEECCCCSSSCTTCCCTTTCHHHH
T ss_pred HHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCC---CCCCEEECCCccccccccccccccchhh
Confidence 99997 443333 4899999999998765544432 210 000000 025666766432100
Q ss_pred ----cCCCC-C--C-----CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccccc
Q 013521 206 ----FPDLS-T--T-----SRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEI 271 (441)
Q Consensus 206 ----~~~~~-~--~-----~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~ 271 (441)
..+++ + . +++ .+++++| |||||. +.+.+++++|+++|++||+++|+||+|.+|...+....+...
T Consensus 192 ~~~~~~~l~~~~i~~~~~~~~~-~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~ 270 (419)
T 2eo5_A 192 VNRVIEFIEDYIFVNLVPPEEV-AGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENF 270 (419)
T ss_dssp HHHHHHHHHHTHHHHTCCGGGE-EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred HHHHHHHHHHHHHhhccCCCCE-EEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhc
Confidence 11233 2 1 233 4566788 567896 678999999999999999999999999987655432222222
Q ss_pred CCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHH
Q 013521 272 PGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTV 350 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 350 (441)
...++ +.||||.++ +| +|+||++++++++ . +.. ......+.++++|.++.++++. . +++
T Consensus 271 ~~~~d----~~t~sK~~~-~G~~riG~~~~~~~~~-~--------~~~-~~~~t~~~n~~~~~aa~aal~~--~---~~~ 330 (419)
T 2eo5_A 271 NTVPD----VITLAKALG-GGIMPIGATIFRKDLD-F--------KPG-MHSNTFGGNALACAIGSKVIDI--V---KDL 330 (419)
T ss_dssp TCCCS----EEEECGGGG-TTTSCCEEEEEEGGGC-C--------C-------CCCCCHHHHHHHHHHHHH--H---HHH
T ss_pred CCCCC----EEEeccccc-CCccceEEEEEchHhh-c--------CCc-ccCCCCCCCHHHHHHHHHHHHH--H---HHH
Confidence 21222 238999998 69 9999999998874 2 111 1223445789999998888862 1 237
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecC
Q 013521 351 IDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGH 426 (441)
Q Consensus 351 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~ 426 (441)
+++++++++++.+.|+++ +.... ..|+|+|+++.+ .... +...++ ++||.+.|+. .+++||++ ..+
T Consensus 331 ~~~~~~~~~~l~~~L~~~-~~~~~-~~g~~~~i~~~~~~~~~~-~~~~l~-~~Gv~v~~~~------~~~lRis~~~~~t 400 (419)
T 2eo5_A 331 LPHVNEIGKIFAEELQGL-ADDVR-GIGLAWGLEYNEKKVRDR-IIGESF-KRGLLLLPAG------RSAIRVIPPLVIS 400 (419)
T ss_dssp HHHHHHHHHHHHHHHTTS-SSEEE-EETTEEEEECSCHHHHHH-HHHHHH-HTTEECEEET------TTEEEECCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHh-hhheE-eeeEEEEEEEecCccHHH-HHHHHH-HCCCEEecCC------CCEEEEECCCCCC
Confidence 888999999999999876 43333 357889999842 1234 666666 5699999863 57899975 568
Q ss_pred HHHHHHHHHHHHhh
Q 013521 427 REYISEACRRLKNF 440 (441)
Q Consensus 427 ~~~~~~~l~~l~~~ 440 (441)
++++++++++|+++
T Consensus 401 ~e~i~~~l~~l~~~ 414 (419)
T 2eo5_A 401 EEEAKQGLDILKKV 414 (419)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
No 132
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.97 E-value=2.1e-29 Score=243.54 Aligned_cols=327 Identities=12% Similarity=0.120 Sum_probs=219.9
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCC-CC---CCCCCCCcCcHHHHHHHHHHHhhhCCCCCC-c-EEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTV-KG---YKGYGAEQGNMALRTAIADKFYKDMGIEGD-E-IFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~-~~---~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~-I~~t~G~~~ 146 (441)
.++.+..|. .++|+.+.+++.+.+.+.... .. ..+| ..+..++++++++.+.+.++++++ + |++|+|+++
T Consensus 4 ~~~l~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~ 79 (362)
T 2c0r_A 4 RAYNFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHR--GAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGAST 79 (362)
T ss_dssp CCEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT--SHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHH
T ss_pred ceeeccCCC--CCCCHHHHHHHHHHHhhhhhcCccccccCCC--cHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchH
Confidence 356666663 578899999999987543210 01 1223 224456677777777666688764 6 568899999
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCC--CCCccCCCC---CCCCccEE
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRP--ENNFFPDLS---TTSRTDII 218 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~--~~~~~~~~~---~~~~~~~v 218 (441)
++++ +..++++||+|++..+.+.+. ...++..| +++.++.+. +.++.++.+ ..+++++|
T Consensus 80 a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-------------~~~~v~~~~~~~~~~~~~~~~~~i~~~t~~v 146 (362)
T 2c0r_A 80 QFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-------------DTHVAASSEASNYMTLPKLQEIQLQDNAAYL 146 (362)
T ss_dssp HHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-------------CEEEEEECGGGTTCSCCCGGGCCCCTTEEEE
T ss_pred HHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-------------CeEEEecccccccccCCCHHHcccCCCcCEE
Confidence 9997 677889999999887775553 34555556 455566542 122223322 24689999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++++|+||||.+++ ++++| +|+++|+|++|+.+.. +.++.. ..+++.|+||++|++| +||+
T Consensus 147 ~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~---~~~~~~------~d~~~~s~~K~~g~~G--~G~l 207 (362)
T 2c0r_A 147 HLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDILSR---PFDLNQ------FGLVYAGAQKNLGPSG--VTVV 207 (362)
T ss_dssp EEESEETTTTEECS--SCCCC------TTSCEEEECTTTTTSS---CCCGGG------CSEEEEETTTTTCCSS--CEEE
T ss_pred EEeCCcCccceecc--ccccc------CCCEEEEEChhhccCC---ccchhH------CcEEEEeccccccCcC--cEEE
Confidence 99999999999755 25555 8999999999985432 222221 2388889999999788 9999
Q ss_pred EeeccccccCCch--hHHHHHH--HHhhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhCC-C-e
Q 013521 299 VVPEELRYSNGYP--VIKDFNR--IVCTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQSLG-L-K 371 (441)
Q Consensus 299 ~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~-~ 371 (441)
+++++++..-... ..-.+.. .......+++.+.|.++.++++..... ++++++++++++++++.+.|++++ + +
T Consensus 208 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 287 (362)
T 2c0r_A 208 IVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYR 287 (362)
T ss_dssp EEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSE
T ss_pred EEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 9998875221100 0000000 011223457778888888777521112 568889999999999999999887 6 6
Q ss_pred eeCC---CCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 372 VNGG---KNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 372 ~~~~---~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
+..+ ..+.++|+.++. .+..++.+.| +++||.+.||..| .++||||++. ++++++++++.|+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~gi~~~~g~~~----~~~iRis~~~~~~~e~i~~l~~~l~~~ 357 (362)
T 2c0r_A 288 GCVDVDSRSDMNITFRLASEELEKEFVKAS-EQEGFVGLKGHRS----VGGLRASIYNAVPYESCEALVQFMEHF 357 (362)
T ss_dssp ESSCGGGBCSSEEEEECSCHHHHHHHHHHH-HHTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCChHHcCCcEEEEEcCCcchHHHHHHHH-HHCCCeeccCCCC----CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6321 245678998873 2345666665 4559999998765 3579999853 799999999999875
No 133
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.97 E-value=2.1e-30 Score=257.60 Aligned_cols=328 Identities=16% Similarity=0.128 Sum_probs=212.1
Q ss_pred CeEEeCCC-CCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHH
Q 013521 73 RLIRLGIG-DTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRL 151 (441)
Q Consensus 73 ~~i~l~~g-~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l 151 (441)
++++|+.| +++++.|+.+.+++......... .+...|+ ..|.+ +++++++++.+.++. +++++++|+++++.++
T Consensus 90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~-~~~~~Y~-~~g~~-~~~~l~~~la~~~g~--~~~i~~~sGt~al~~~ 164 (464)
T 1ibj_A 90 LLVNLDNKFDPFDAMSTPLYQTATFKQPSAIE-NGPYDYT-RSGNP-TRDALESLLAKLDKA--DRAFCFTSGMAALSAV 164 (464)
T ss_dssp HHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSC-CCSCSBT-TTCCH-HHHHHHHHHHHHHTC--SEEEEESSHHHHHHHH
T ss_pred eEEECCCCCCCCCCCCccHHhhhhhhhhcccc-cCCcccc-CCCCH-HHHHHHHHHHHHhCC--CeEEEECCHHHHHHHH
Confidence 47899997 78888777776666543111111 3345675 34555 788888887765564 3677777778899876
Q ss_pred HHhcCCCCEEEEeCCCchhhHhHH----HHhccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCcc
Q 013521 152 QMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPT 227 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPt 227 (441)
..++++||+|++++|+|+++...+ ...| .+++.++.++.+.+...+ .+++++|++++|+|||
T Consensus 165 l~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G------------~~v~~v~~~d~~~l~~~i--~~~tk~v~l~~p~Npt 230 (464)
T 1ibj_A 165 THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG------------VVVKRVNTTKLDEVAAAI--GPQTKLVWLESPTNPR 230 (464)
T ss_dssp HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGT------------CEEEEECTTSHHHHHHHC--CSSEEEEEECSSCTTT
T ss_pred HHHhCCCCEEEEECCCchhHHHHHHHHHHHcC------------CEEEEeCCCCHHHHHHHh--ccCceEEEEeCCCCCC
Confidence 568899999999999999987643 3345 478888764211111111 3679999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc-cceeEEEEeeccccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT-GVRLGWTVVPEELRY 306 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~-G~r~G~l~~~~~~~~ 306 (441)
|.+++ +++|+++|++||+++|+||+|..... ..++ . .++++++.|+||.++.+ |+|+||++++++.+
T Consensus 231 G~v~~---l~~i~~la~~~gi~livDea~~~g~~---~~~~-~----~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l- 298 (464)
T 1ibj_A 231 QQISD---IRKISEMAHAQGALVLVDNSIMSPVL---SRPL-E----LGADIVMHSATKFIAGHSDVMAGVLAVKGEKL- 298 (464)
T ss_dssp CCCCC---HHHHHHHHHTTTCEEEEECTTTCTTT---CCGG-G----TTCSEEEEETTTTTTCSSCCCCEEEEECSHHH-
T ss_pred CEeec---HHHHHHHHHHcCCEEEEECCCccccc---CChh-h----cCCEEEEECCcccccCCCCCcEEEEEEChHHH-
Confidence 99998 89999999999999999999985221 1112 1 24579999999988743 89999999986332
Q ss_pred cCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH----------HHHHhC-CCeeeCC
Q 013521 307 SNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV----------DAFQSL-GLKVNGG 375 (441)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~----------~~L~~~-g~~~~~~ 375 (441)
.+.+.........+.+++.|.++.+.++... ..+++..+......+++. +.|+++ ++++..+
T Consensus 299 ------~~~l~~~~~~~g~~~~~~~~~a~~~al~~~~-~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~ 371 (464)
T 1ibj_A 299 ------AKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA-LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFS 371 (464)
T ss_dssp ------HHHHHHHHHHTTCBCCHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTT
T ss_pred ------HHHHHHHHHhcCCCCCHHHHHHHHhchhhHH-HHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhc
Confidence 4555555544445567888888888876321 111222121222222221 122222 3444333
Q ss_pred C---CceEEEEEcCCCChH-HHHHHHHHhcCeEEeCCC------------CcCC---------CCCCeEEEEeecCHHHH
Q 013521 376 K---NAPYVWVQFPGSSSW-DVFAEILEKTHILTIPGS------------GFGP---------GGNEHIRVSAFGHREYI 430 (441)
Q Consensus 376 ~---~~~~~~~~~~~~~~~-~~~~~ll~~~gi~v~pg~------------~f~~---------~~~~~iRls~~~~~~~~ 430 (441)
. .|.++|+++++.... .+++. ++..||.+++|. .|.. .++++|||++.. +++
T Consensus 372 ~~~g~g~~~~~~l~~~~~~~~~~~~-L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--edi 448 (464)
T 1ibj_A 372 QAKGAGSVFSFITGSVALSKHLVET-TKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--EDV 448 (464)
T ss_dssp TCSCCCSEEEEECSCHHHHHHHHHH-CSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SCH
T ss_pred cCCCCceEEEEEECCHHHHHHHHHh-cCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCH
Confidence 2 356899998531122 24444 344689998886 1221 225799999876 788
Q ss_pred HHHHHHHHhhC
Q 013521 431 SEACRRLKNFL 441 (441)
Q Consensus 431 ~~~l~~l~~~l 441 (441)
++++++|++++
T Consensus 449 ~~li~~L~~al 459 (464)
T 1ibj_A 449 DDLISDLDIAF 459 (464)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888753
No 134
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.97 E-value=6.3e-29 Score=242.49 Aligned_cols=313 Identities=15% Similarity=0.144 Sum_probs=219.6
Q ss_pred CCCCCCC-c---HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh
Q 013521 80 GDTTQPI-P---DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML 154 (441)
Q Consensus 80 g~~~~~~-~---~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l 154 (441)
++|+++. | +.+.+++.+.+.. +...|.+..+..++|+++|+++ +.+ ++|++++| ++++.+ +..+
T Consensus 5 ~~p~f~~~p~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~l~~~la~~~----~~~-~~i~~~sG-t~al~~~l~~l 73 (388)
T 1b9h_A 5 KAPEFPAWPQYDDAERNGLVRALEQ-----GQWWRMGGDEVNSFEREFAAHH----GAA-HALAVTNG-THALELALQVM 73 (388)
T ss_dssp CCCCCCCSSCCCHHHHHHHHHHHHT-----SCCBTTTCSHHHHHHHHHHHHT----TCS-EEEEESCH-HHHHHHHHHHT
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHc-----CCeeecCCHHHHHHHHHHHHHh----CCC-eEEEeCCH-HHHHHHHHHHc
Confidence 4567765 6 8899999998864 2234666778999999999997 544 67888887 789987 6667
Q ss_pred -cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCCccc
Q 013521 155 -LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNNPTG 228 (441)
Q Consensus 155 -~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~NPtG 228 (441)
+++||+|+++.|+|+++...+...| .+++.++++++ ++..+++. .+++++|+ |+||||
T Consensus 74 ~~~~gd~Vi~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~n~tG 137 (388)
T 1b9h_A 74 GVGPGTEVIVPAFTFISSSQAAQRLG------------AVTVPVDVDAA-TYNLDPEAVAAAVTPRTKVIM---PVHMAG 137 (388)
T ss_dssp TCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TCCBCHHHHHHHCCTTEEEEC---CBCGGG
T ss_pred CCCCcCEEEECCCccHHHHHHHHHcC------------CEEEEEecCCC-cCCCCHHHHHHhcCcCceEEE---EeCCcc
Confidence 7999999999999999999998888 58899998764 23333321 25677655 999999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcccccccc-cCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccccc
Q 013521 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS 307 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~ 307 (441)
.+.+ +++|+++|++||++||+|++|+.+. +.+ .++..+ . ++.+.||||..+++|.|+||++++++.+..
T Consensus 138 ~~~~---l~~i~~la~~~~~~li~D~a~~~g~~~~~--~~~~~~---~--~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~ 207 (388)
T 1b9h_A 138 LMAD---MDALAKISADTGVPLLQDAAHAHGARWQG--KRVGEL---D--SIATFSFQNGKLMTAGEGGAVVFPDGETEK 207 (388)
T ss_dssp CCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETT--EEGGGS---S--SCEEEECCTTSSSCSSSCEEEEECTTCHHH
T ss_pred CcCC---HHHHHHHHHHcCCEEEEecchhcCCccCC--eecccc---c--ceEEEEccCCCcccCCCeEEEEECCHHHHH
Confidence 9988 8899999999999999999998632 322 222222 1 478899996665667799999998764200
Q ss_pred CCchhHHHHHHHHhhh--------------cC-CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Q 013521 308 NGYPVIKDFNRIVCTC--------------FN-GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLK 371 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 371 (441)
.+.+....... .+ ..+.+...++... .+++++.+++++++++++.+.|+++ |+.
T Consensus 208 -----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~-----~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 277 (388)
T 1b9h_A 208 -----YETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ-----LARLDEQIAVRDERWTLLSRLLGAIDGVV 277 (388)
T ss_dssp -----HHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred -----HHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 12222221110 00 1233332222222 2345778888899999999999987 787
Q ss_pred eeC------CCCceEEEEEcCCC---ChHHHHHHHHHhcCeEEeCCCCcCC-----------C----------------C
Q 013521 372 VNG------GKNAPYVWVQFPGS---SSWDVFAEILEKTHILTIPGSGFGP-----------G----------------G 415 (441)
Q Consensus 372 ~~~------~~~~~~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~-----------~----------------~ 415 (441)
+.. +.+++++|+.+++. +..++.+.|.+ +||.++++..-.. . .
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (388)
T 1b9h_A 278 PQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVE-AGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAIS 356 (388)
T ss_dssp ECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHH-TTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHH
T ss_pred ccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHH-CCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHH
Confidence 764 24578999999853 34566677665 5999988643100 0 0
Q ss_pred CCeEEEEe--ec-CHHHHHHHHHHHHhh
Q 013521 416 NEHIRVSA--FG-HREYISEACRRLKNF 440 (441)
Q Consensus 416 ~~~iRls~--~~-~~~~~~~~l~~l~~~ 440 (441)
.+.|||++ .. ++++++++++.|+++
T Consensus 357 ~~~l~l~~~~~~~t~edi~~~~~~l~~~ 384 (388)
T 1b9h_A 357 SDCVWLHHRVLLAGEPELHATAEIIADA 384 (388)
T ss_dssp HHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred hCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 13699997 34 789999999999875
No 135
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.97 E-value=8.5e-29 Score=246.87 Aligned_cols=322 Identities=13% Similarity=0.126 Sum_probs=215.1
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
..+|+..+....+.++.+.+++.. . ...|.+..+..+||+++|+++ +. +++++|+|+++++.+ +
T Consensus 43 ~ylD~~~~~~~~~~~~~~~~a~~~--------~-~~~y~~~~~~~~l~~~la~~~----~~--~~~~~~~~gt~a~~~al 107 (456)
T 2ez2_A 43 IYIDLLTDSGTNAMSDKQWAGMMM--------G-DEAYAGSENFYHLERTVQELF----GF--KHIVPTHQGRGAENLLS 107 (456)
T ss_dssp CSEECSCSSSCCCCCHHHHHHHTT--------C-CCCSSSCHHHHHHHHHHHHHH----CC--SEEEEESSHHHHHHHHH
T ss_pred ceeeeccccCCccCCHHHHHHhhc--------c-hhhcccChhHHHHHHHHHHHh----CC--CcEEEeCCcHHHHHHHH
Confidence 356666655444556666666541 1 235777788999999999997 33 589999999999987 6
Q ss_pred HHhcCCCCEEEEeCCCc-hhhHhHHHHhccccccccccCccceeEEeecCCC----C----CccCCCCC-----CCC---
Q 013521 152 QMLLGSNVTVAVQDPSF-PAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPE----N----NFFPDLST-----TSR--- 214 (441)
Q Consensus 152 ~~l~~~gd~Vlv~~p~y-~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~----~----~~~~~~~~-----~~~--- 214 (441)
..++++|| +++.|+| +.+...+...| .+++.++++.+ . ++..|++. .++
T Consensus 108 ~~l~~~gd--i~~~~~~~~~~~~~~~~~G------------~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~ 173 (456)
T 2ez2_A 108 QLAIKPGQ--YVAGNMYFTTTRYHQEKNG------------AVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAE 173 (456)
T ss_dssp HHHCCTTC--EEEESSCCHHHHHHHHHTT------------CEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGG
T ss_pred HHhCCCCC--EeccccccchhHHHHHHcC------------CEEEEecccccccccccccccCCCCHHHHHHHHHhcccc
Confidence 77789999 7889999 77788888888 57888887631 1 12333221 122
Q ss_pred -ccEEEEcCCCC-ccccCCCHHHHHHHHHHHHHcCcEEEEcccccc----------cccCCCCC-ccc-ccCCCcceeEE
Q 013521 215 -TDIIFFCSPNN-PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA----------YITDPSPR-SIY-EIPGAREVAIE 280 (441)
Q Consensus 215 -~~~v~i~~p~N-PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~----------~~~~~~~~-~~~-~~~~~~~~~i~ 280 (441)
+++|++++|+| |||.+++.+++++|+++|++||+++|+||+|.. +.+.+.+. ++. .+....+ +++
T Consensus 174 ~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d-~~~ 252 (456)
T 2ez2_A 174 NIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD-GCT 252 (456)
T ss_dssp GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCS-EEE
T ss_pred ceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCC-EEE
Confidence 48899999998 999999999999999999999999999999985 23433221 110 1111223 344
Q ss_pred EecCCcccCCccceeEEEEe-eccccccCCchhHHHHHHHHhhh-----cCCCcHHHHHH-HHHhcCCCcHHHH-HHHHH
Q 013521 281 ISSFSKFAGFTGVRLGWTVV-PEELRYSNGYPVIKDFNRIVCTC-----FNGASNIVQAG-GLACLSPDGFQAL-RTVID 352 (441)
Q Consensus 281 i~S~SK~~~~~G~r~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a-~~~~l~~~~~~~~-~~~~~ 352 (441)
+ |++|..+ +| |.||+++ ++++ .+.+....... ..+.+.....+ +.+.++ .+ +...+
T Consensus 253 ~-S~kk~~~-~~-~gG~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~-----~~~~~~~~ 316 (456)
T 2ez2_A 253 M-SGKKDCL-VN-IGGFLCMNDDEM--------FSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLRE-----AMQYEYIE 316 (456)
T ss_dssp E-ETTTTTC-CS-SCEEEEESCHHH--------HHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHH-----HTCHHHHH
T ss_pred E-eCcccCC-CC-ceeEEEECCHHH--------HHHHHHHHhhccCcccccCcchhHHHHHHHHHHH-----HhHHHHHH
Confidence 4 7888765 67 7899998 4555 34444333221 11223222222 333332 11 23444
Q ss_pred HHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEc----CCCChHHH-----HHHHHHhcCeEEeC-CCCcC----------
Q 013521 353 YYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQF----PGSSSWDV-----FAEILEKTHILTIP-GSGFG---------- 412 (441)
Q Consensus 353 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~ll~~~gi~v~p-g~~f~---------- 412 (441)
+.+++.+.+.+.|++.|+++..+.+++++|+++ ++.+..++ ...|++++||.+.+ |..|.
T Consensus 317 ~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~ 396 (456)
T 2ez2_A 317 HRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHH 396 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBC
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccc
Confidence 455566778888887788777677899999987 33334444 66665677999766 54331
Q ss_pred CCCCCeEEEEee---cCHHHHHHHHHHHHhh
Q 013521 413 PGGNEHIRVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 413 ~~~~~~iRls~~---~~~~~~~~~l~~l~~~ 440 (441)
..+.++|||++. .+++++++++++|+++
T Consensus 397 ~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~ 427 (456)
T 2ez2_A 397 RPKLETVRLTIPRRVYTYAHMDVVADGIIKL 427 (456)
T ss_dssp CCSCCEEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 122478999985 6899999999999875
No 136
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.97 E-value=1.1e-29 Score=250.60 Aligned_cols=330 Identities=12% Similarity=0.107 Sum_probs=218.1
Q ss_pred CCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++||+.|. .++ ..++.+.+++.+.+..... ....| +.....++++.++++ ++ +++|++|+|++++
T Consensus 56 g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~----~g--~~~v~~~~ggteA 126 (420)
T 2pb2_A 56 GKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWH--TSNVF-TNEPALRLGRKLIDA----TF--AERVLFMNSGTEA 126 (420)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCC--CCTTS-CCHHHHHHHHHHHHH----SS--CSEEEEESSHHHH
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhccc--ccCcc-CCHHHHHHHHHHHhh----CC--CCeEEEeCCHHHH
Confidence 45789998772 222 3678999999998875421 11123 233344555555554 34 5899999999999
Q ss_pred HHH-HHHhcC-------CC-CEEEEeCCCchhhHhH-HHHhccccc---cccccCccceeEEeecCCCCCccCCCCC--C
Q 013521 148 ISR-LQMLLG-------SN-VTVAVQDPSFPAYIDT-SVIVGQAGK---FLKETGKYRNIVYMNCRPENNFFPDLST--T 212 (441)
Q Consensus 148 l~~-l~~l~~-------~g-d~Vlv~~p~y~~~~~~-~~~~g~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~ 212 (441)
+.+ +..+.. +| +.|++.+|+|++.... ....|.... +.+.. ..+..++.++ ..++++ .
T Consensus 127 ~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~---~~~~~~~~~d----~~~le~~i~ 199 (420)
T 2pb2_A 127 NETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKP---ADIIHVPFND----LHAVKAVMD 199 (420)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCC---SCEEEECTTC----HHHHHHHCC
T ss_pred HHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCC---CCeEEecCCC----HHHHHHHhc
Confidence 997 444443 67 5999999999887544 334442100 00000 1255555421 111211 2
Q ss_pred CCccEEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc
Q 013521 213 SRTDIIFFCSPNNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
+++++|+++.++||+|. +++.+++++|.++|++||+++|+||+|.++...+.+.+.....-.+| ++ ||||.++ +
T Consensus 200 ~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~d--ii--t~sK~l~-~ 274 (420)
T 2pb2_A 200 DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPD--IL--TSAKALG-G 274 (420)
T ss_dssp TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS--EE--EECGGGG-T
T ss_pred cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCC--eE--Eeccccc-C
Confidence 57888888777888884 69999999999999999999999999987765543322222221233 22 7899998 9
Q ss_pred cceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--C
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--G 369 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g 369 (441)
|+|+||++++++++ +.+.........+.+++.+.++.+.++.... +++.++++++++++.+.|+++ +
T Consensus 275 G~~iG~~~~~~~l~--------~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 343 (420)
T 2pb2_A 275 GFPVSAMLTTQEIA--------SAFHVGSHGSTYGGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQ 343 (420)
T ss_dssp TSCCEEEEECHHHH--------TTCC----CCEECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEhHHHH--------HhhcCCCcCcccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998763 2222111223345788888888887763211 456677788888888888764 2
Q ss_pred C---eeeCCCCceEEEEEcCCC---ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 370 L---KVNGGKNAPYVWVQFPGS---SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 370 ~---~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
+ .... ..|+++|++++.. +..++.+.+++ +||.+.|+. ++++||++ ..+++++++++++|+++
T Consensus 344 ~~~~~~~~-~~g~~~~v~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~------~~~iRl~~~~~~t~eei~~~~~~l~~~ 414 (420)
T 2pb2_A 344 FDIFSDIR-GMGLLIGAELKPKYKGRARDFLYAGAE-AGVMVLNAG------ADVMRFAPSLVVEEADIHEGMQRFAQA 414 (420)
T ss_dssp HCCEEEEE-EETTEEEEEECGGGTTCHHHHHHHHHH-TTEECEESS------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEE-ecceEEEEEECCCchHHHHHHHHHHHH-CCCEEEeCC------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2 2223 3578899998732 45677777776 599999863 57899994 56899999999999875
No 137
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.97 E-value=4e-29 Score=246.13 Aligned_cols=327 Identities=13% Similarity=0.119 Sum_probs=218.6
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCC-CCC--CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK-GYG--AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~-~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
+.+.|+.+.++ +.|+.+.+++.+.+.......... .|. ......++++.+++++ ++++++|++|+|+++++.
T Consensus 28 ~~~yld~~~~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~al~ 102 (416)
T 1qz9_A 28 GVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI----GARDGEVVVTDTTSINLF 102 (416)
T ss_dssp TCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT----TCCTTSEEECSCHHHHHH
T ss_pred CeEeecCCCcC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHc----CCCcccEEEeCChhHHHH
Confidence 57889888776 678889999999886421000000 111 1234456677777664 788899999999999997
Q ss_pred H-HHHhc------CCCCE-EEEeCCCchhhHhHHHH----h--ccccccccccCccceeEEeecCCCCCccCCCCCCCCc
Q 013521 150 R-LQMLL------GSNVT-VAVQDPSFPAYIDTSVI----V--GQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRT 215 (441)
Q Consensus 150 ~-l~~l~------~~gd~-Vlv~~p~y~~~~~~~~~----~--g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~ 215 (441)
+ +..++ ++||+ |++..++|+++...+.. . | .+++.++. . +.+...+ .+++
T Consensus 103 ~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g------------~~~~~v~~-~-~~l~~~i--~~~~ 166 (416)
T 1qz9_A 103 KVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQG------------YTLRLVDS-P-EELPQAI--DQDT 166 (416)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSS------------CEEEEESS-G-GGHHHHC--STTE
T ss_pred HHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCC------------ceEEEeCc-H-HHHHHHh--CCCc
Confidence 5 55555 89987 55556688766544332 2 5 47777775 1 1111111 2578
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
++|++++|+||||.+++ +++|.++|++||+++|+|++|+. ...+..+..+ +..+++.|+||+++ +|.++
T Consensus 167 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---g~~~~~~~~~----~~d~~~~s~~K~l~-~g~~~ 235 (416)
T 1qz9_A 167 AVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA---GAVPVDLHQA----GADYAIGCTYKYLN-GGPGS 235 (416)
T ss_dssp EEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT---TTSCCCHHHH----TCSEEEECSSSTTC-CCTTC
T ss_pred eEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccc---cCcCCChhhc----CCCEEEecCcccCC-CCCCC
Confidence 99999999999999999 88999999999999999999983 1112223222 23488999999985 78888
Q ss_pred -EEEEeeccccccCCchhHHHHHH---------------HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 013521 296 -GWTVVPEELRYSNGYPVIKDFNR---------------IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAK 359 (441)
Q Consensus 296 -G~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 359 (441)
||++++++++..-.......+.. .......+.+...+.++.++++.....++++++++++++++
T Consensus 236 ~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 315 (416)
T 1qz9_A 236 QAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTD 315 (416)
T ss_dssp CCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999988742110000000000 01112233566666555555542111235778899999999
Q ss_pred HHHHHHHhC----CCeeeCCC----CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee---cCHH
Q 013521 360 IIVDAFQSL----GLKVNGGK----NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF---GHRE 428 (441)
Q Consensus 360 ~l~~~L~~~----g~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~---~~~~ 428 (441)
++.+.|++. |+++..+. .++++|++++. ..++.+.|. ++||.+... +.+++||++. .+++
T Consensus 316 ~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~-~~gi~~~~~------~~~~lRis~~~~~~t~~ 386 (416)
T 1qz9_A 316 LFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE--GYAVIQALI-DRGVIGDYR------EPRIMRFGFTPLYTTFT 386 (416)
T ss_dssp HHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT--HHHHHHHHH-TTTEECEEE------TTTEEEEECCTTTCCHH
T ss_pred HHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC--HHHHHHHHH-hCCcEeccC------CCCeEEEeCcccCCCHH
Confidence 999999886 78876653 36789999873 566767666 459987531 3579999985 3899
Q ss_pred HHHHHHHHHHhh
Q 013521 429 YISEACRRLKNF 440 (441)
Q Consensus 429 ~~~~~l~~l~~~ 440 (441)
++++++++|+++
T Consensus 387 ~i~~~~~~l~~~ 398 (416)
T 1qz9_A 387 EVWDAVQILGEI 398 (416)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 138
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.97 E-value=9.3e-29 Score=241.94 Aligned_cols=340 Identities=13% Similarity=0.067 Sum_probs=215.5
Q ss_pred CCCeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|++.+. ..+. .++.+.+++.+.+.+.. +.| ..+..++++++++++.+..+ +++|++|+|++++
T Consensus 35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~--~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~ea 105 (395)
T 3nx3_A 35 AKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLL-----HTS--NLYYNENIAAAAKNLAKASA--LERVFFTNSGTES 105 (395)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCS-----CCC--TTSBCHHHHHHHHHHHHHHT--CSEEEEESSHHHH
T ss_pred CCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcc-----ccc--cccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHHH
Confidence 45689998873 3333 57999999999886532 111 11223445555555544334 6899999999999
Q ss_pred HHH-HHHhc-------CCCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCCCCCccCCCCCCCCccEE
Q 013521 148 ISR-LQMLL-------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRPENNFFPDLSTTSRTDII 218 (441)
Q Consensus 148 l~~-l~~l~-------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v 218 (441)
+.. +..+. .++|.|++.+|+|+++.......+....+.. ......++..++.++-+.+...+ .+++++|
T Consensus 106 ~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~~~v 183 (395)
T 3nx3_A 106 IEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLV--NEKTCAI 183 (395)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTC--CTTEEEE
T ss_pred HHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhc--cCCeEEE
Confidence 987 44333 4679999999999987655544432111000 00000245555543211111111 2567787
Q ss_pred EEcCCCCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
+++.++|++|.+ ++++++++|.++|++||+++|+||+|.+|...+.........-.+ .+.||||.++ +|+|+||
T Consensus 184 ~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~----d~~t~sK~~~-~G~~~G~ 258 (395)
T 3nx3_A 184 ILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILP----DIMTSAKALG-CGLSVGA 258 (395)
T ss_dssp EEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCC----SEEEECGGGT-TTSCCEE
T ss_pred EEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCC----CEEEeccccc-CCCceEE
Confidence 777667777766 788999999999999999999999999876544332222222122 2457999998 6999999
Q ss_pred EEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHhCC-CeeeCC
Q 013521 298 TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG-FQALRTVIDYYKENAKIIVDAFQSLG-LKVNGG 375 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~ 375 (441)
++++++++ .+.+.........+.+++++.++.++++... ..+.++.++..+..++.+.+.+.++. +....
T Consensus 259 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 330 (395)
T 3nx3_A 259 FVINQKVA-------SNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRK- 330 (395)
T ss_dssp EEECHHHH-------HHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-
T ss_pred EEEchhhh-------hhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-
Confidence 99988762 1223222223344578899988888886211 12234444444444444444444443 33333
Q ss_pred CCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 376 KNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 376 ~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
..|+++|+.++.. ...++...+++ +||.+.|+. ++++||++ ..+++++++++++|++++
T Consensus 331 ~~g~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~iRi~~~~~~t~e~i~~~l~~l~~~l 392 (395)
T 3nx3_A 331 GLGFMQGLSLDKSVKVAKVIQKCQE-NALLLISCG------ENDLRFLPPLILQKEHIDEMSEKLRKAL 392 (395)
T ss_dssp EETTEEEEEECTTSCHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEeCCcchHHHHHHHHHH-CCCEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4678999999743 45667777665 499999863 67999984 558999999999998763
No 139
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.97 E-value=8.2e-30 Score=252.51 Aligned_cols=342 Identities=11% Similarity=0.020 Sum_probs=215.0
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++|+..+.+ ++. .++.+.+++.+.+..... ....| +.....++++.++++ ++.++++|++|+|++++
T Consensus 42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~----~~~~~~~v~~~~gg~ea 114 (433)
T 1zod_A 42 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH--LFSEM-LSRPVVDLATRLANI----TPPGLDRALLLSTGAES 114 (433)
T ss_dssp CCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC--CCTTC-CCHHHHHHHHHHHHH----SCTTCCEEEEESCHHHH
T ss_pred CCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcc--ccccc-CCHHHHHHHHHHHHh----CCCCcCEEEEeCchHHH
Confidence 356788866653 232 478999999999876421 11234 222344555555554 57778999999999999
Q ss_pred HHH-HHHhc--CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC--CCCcc----------C-CCCC
Q 013521 148 ISR-LQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP--ENNFF----------P-DLST 211 (441)
Q Consensus 148 l~~-l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~--~~~~~----------~-~~~~ 211 (441)
+.. +..+. ..+|.|++.+|+|++.......................+..++... ...+. . ++++
T Consensus 115 ~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~ 194 (433)
T 1zod_A 115 NEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFD 194 (433)
T ss_dssp HHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHH
Confidence 997 43332 3468999999999887554443321100000000001334444321 11111 1 1221
Q ss_pred --C----CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEec
Q 013521 212 --T----SRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISS 283 (441)
Q Consensus 212 --~----~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 283 (441)
. +++++ ++++| +||||. +.+++++++|+++|++||+++|+||+|.+|...+....+....-.++ +.|
T Consensus 195 ~l~~~~~~~~~~-vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~d----i~s 269 (433)
T 1zod_A 195 LIDRQSSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPD----ILT 269 (433)
T ss_dssp HHHHHCCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----EEE
T ss_pred HHHhcCCCCeEE-EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCC----EEE
Confidence 1 34555 55677 688996 57899999999999999999999999998765443222222211222 348
Q ss_pred CCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhh--hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 284 FSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCT--CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 284 ~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
|||.++ +|+|+||+++++++ ++.+...... ...+.+++++.++.++++... + +...++++++++.+
T Consensus 270 ~sK~~~-~G~~ig~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~-~--~~~~~~~~~~~~~l 337 (433)
T 1zod_A 270 LSKTLG-AGLPLAAIVTSAAI--------EERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ-R--DGLVARANVMGDRL 337 (433)
T ss_dssp ECHHHH-TTSSCEEEEECHHH--------HHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHH-H--TTHHHHHHHHHHHH
T ss_pred eccccc-CCCCeeEEEEhHHH--------HHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHH-h--CCHHHHHHHHHHHH
Confidence 999998 69999999999877 3444432111 334568888888888875211 1 22445566666666
Q ss_pred HHHHHhC----C-CeeeCCCCceEEEEEcCC---------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ec
Q 013521 362 VDAFQSL----G-LKVNGGKNAPYVWVQFPG---------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FG 425 (441)
Q Consensus 362 ~~~L~~~----g-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~ 425 (441)
.+.|+++ + +.... ..|+|+|++++. ....++...+++ +||.+.||..|+ .++++||++ ..
T Consensus 338 ~~~l~~l~~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~--~~~~lRi~~~~~~ 413 (433)
T 1zod_A 338 RRGLLDLMERFDCIGDVR-GRGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLPG--MGGVFRIAPPLTV 413 (433)
T ss_dssp HHHHHHHHHHCTTEEEEE-EETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCTT--SCCEEEECCCTTC
T ss_pred HHHHHHHHHhCCCeEEEE-EEEEEEEEEEecCccccCCChHHHHHHHHHHHH-CCCeEeccCCCC--CCCEEEEECCcCC
Confidence 6666553 2 22333 357888998852 124567777765 599999988765 357999974 56
Q ss_pred CHHHHHHHHHHHHhh
Q 013521 426 HREYISEACRRLKNF 440 (441)
Q Consensus 426 ~~~~~~~~l~~l~~~ 440 (441)
+++++++++++|+++
T Consensus 414 t~~~i~~~l~~l~~~ 428 (433)
T 1zod_A 414 SEDEIDLGLSLLGQA 428 (433)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 899999999999875
No 140
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.97 E-value=1.1e-28 Score=244.07 Aligned_cols=336 Identities=10% Similarity=0.026 Sum_probs=218.5
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++|++.+.+ ++. .++.+.+++.+.+..... .....|. .....++++.+++++ ++++++|++|+|++++
T Consensus 42 g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~-~~~~~~~-~~~~~~l~~~la~~~----~~~~~~v~~~~ggtea 115 (429)
T 1s0a_A 42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-VMFGGIT-HAPAIELCRKLVAMT----PQPLECVFLADSGSVA 115 (429)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSC-CCCSSEE-CHHHHHHHHHHHHHS----CTTCCEEEEESSHHHH
T ss_pred CCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccc-ccccccC-CHHHHHHHHHHHHhC----CCCCCEEEEeCCHHHH
Confidence 456889988863 333 579999999999875321 1112342 233466777777764 6788999999999999
Q ss_pred HHH-HHHhc---C----CCCEEEEeCCCchhhHhHHHHhccc-----cccccccCccceeEEeecCCC---CCc-cCCCC
Q 013521 148 ISR-LQMLL---G----SNVTVAVQDPSFPAYIDTSVIVGQA-----GKFLKETGKYRNIVYMNCRPE---NNF-FPDLS 210 (441)
Q Consensus 148 l~~-l~~l~---~----~gd~Vlv~~p~y~~~~~~~~~~g~~-----~~~~~~~~~~~~v~~v~~~~~---~~~-~~~~~ 210 (441)
+++ +..+. + |||.|++.+|+|+++...+...+.. ..+.... ..+..++.+.. +.+ ..|++
T Consensus 116 ~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~ 192 (429)
T 1s0a_A 116 VEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYL---PENLFAPAPQSRMDGEWDERDMV 192 (429)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTS---CCCEEECCCCSBC-CCCCGGGGH
T ss_pred HHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCC---CCceEeCCCcccccccchHHHHH
Confidence 997 43322 2 6999999999999865433322110 0000000 13444544311 111 12221
Q ss_pred ---C--C---CCccEEEEcCC--CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeE
Q 013521 211 ---T--T---SRTDIIFFCSP--NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAI 279 (441)
Q Consensus 211 ---~--~---~~~~~v~i~~p--~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i 279 (441)
+ . +++++ ++++| |||||. ..+.+++++|+++|++||+++|+||+|.+|...+....+....-.++
T Consensus 193 ~l~~~l~~~~~~~~~-vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d--- 268 (429)
T 1s0a_A 193 GFARLMAAHRHEIAA-VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD--- 268 (429)
T ss_dssp HHHHHHHHHTTTEEE-EEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS---
T ss_pred HHHHHHHhCCCCEEE-EEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCC---
Confidence 1 1 34545 55666 699996 55788999999999999999999999998755432222222221222
Q ss_pred EEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHH-----HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013521 280 EISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI-----VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDY 353 (441)
Q Consensus 280 ~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 353 (441)
+.||||.++ +| +|+||+++++++ ++.+... ......+.+++++.++.++++... + +...++
T Consensus 269 -~~t~sK~l~-~G~~~iG~~~~~~~~--------~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~-~--~~~~~~ 335 (429)
T 1s0a_A 269 -ILCLGKALT-GGTMTLSATLTTREV--------AETISNGEAGCFMHGPTFMGNPLACAAANASLAILE-S--GDWQQQ 335 (429)
T ss_dssp -EEEECGGGG-TSSSCCEEEEECHHH--------HHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHH-T--CHHHHH
T ss_pred -EEEeccccc-CCCccceEEEeCHHH--------HHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHH-h--CCHHHH
Confidence 237999998 78 999999998876 3444331 011234468888888888875211 1 234567
Q ss_pred HHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecC
Q 013521 354 YKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGH 426 (441)
Q Consensus 354 ~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~ 426 (441)
++++++++.+.|+++ ++.... ..|+++|++++. .+..++...+++ +||.+.|. .+++||++ ..+
T Consensus 336 ~~~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~-------~~~iRis~~~~~t 406 (429)
T 1s0a_A 336 VADIEVQLREQLAPARDAEMVADVR-VLGAIGVVETTHPVNMAALQKFFVE-QGVWIRPF-------GKLIYLMPPYIIL 406 (429)
T ss_dssp HHHHHHHHHHHHGGGGGCTTEEEEE-EETTEEEEEESSCBCHHHHHHHHHH-TTEECCCB-------TTEEEECCCTTCC
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEE-EeeEEEEEEECCcccHHHHHHHHHH-CCCEEecc-------CCEEEEECCCCCC
Confidence 777888888888764 343333 256789999874 356677777775 59999883 26899994 568
Q ss_pred HHHHHHHHHHHHhhC
Q 013521 427 REYISEACRRLKNFL 441 (441)
Q Consensus 427 ~~~~~~~l~~l~~~l 441 (441)
++++++++++|++++
T Consensus 407 ~e~i~~~~~~l~~~~ 421 (429)
T 1s0a_A 407 PQQLQRLTAAVNRAV 421 (429)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
No 141
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.96 E-value=2.1e-29 Score=251.02 Aligned_cols=344 Identities=11% Similarity=0.053 Sum_probs=218.1
Q ss_pred CCCeEEeCCCC---CCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD---TTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~---~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|. +-...++.+.+++.+.+.+... . ...+..+.++++++++.+.++.+.+ |++|+|++++
T Consensus 48 g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~---~----~~~~~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA 119 (452)
T 3n5m_A 48 GKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY---F----PMSQSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEA 119 (452)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC---C----CTTSEEHHHHHHHHHHHHHHTSCEE-EEEESSHHHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC---c----ccccCCHHHHHHHHHHHHhCCCCce-EEEeCchHHH
Confidence 46789998872 3223679999999998875321 1 1223445555666665543455555 9999999999
Q ss_pred HHH-HHHhc-----C---CCCEEEEeCCCchhhHhHHHHhccccccccc-cCccceeEEeecCCCCC--cc---------
Q 013521 148 ISR-LQMLL-----G---SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE-TGKYRNIVYMNCRPENN--FF--------- 206 (441)
Q Consensus 148 l~~-l~~l~-----~---~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~v~~v~~~~~~~--~~--------- 206 (441)
+.. +..+. . ++|.|++.+|+|+++.......+........ ......+..++...... +.
T Consensus 120 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (452)
T 3n5m_A 120 NETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVE 199 (452)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHH
Confidence 997 54444 4 7899999999999987666555432211000 00001234444311100 00
Q ss_pred --CCCCC--C----CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc
Q 013521 207 --PDLST--T----SRTDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276 (441)
Q Consensus 207 --~~~~~--~----~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
.++++ . +++++|+++.+ || ||.++ +++++++|.++|++||+++|+||+|.+|...+.........-.++
T Consensus 200 ~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~d 278 (452)
T 3n5m_A 200 CVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPD 278 (452)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCS
T ss_pred HHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCC
Confidence 11111 1 35666666666 89 99776 888899999999999999999999998765543222222221222
Q ss_pred eeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH------HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHH
Q 013521 277 VAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR------IVCTCFNGASNIVQAGGLACLSPDGFQALRT 349 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 349 (441)
+.||||.++ .| +|+||++++++++ +.+.. +......+.+++++.++.++++.... +.
T Consensus 279 ----i~t~sK~l~-~G~~~ig~~~~~~~i~--------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~ 342 (452)
T 3n5m_A 279 ----IITMAKGIT-SAYLPLSATAVKREIY--------EAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN---EN 342 (452)
T ss_dssp ----EEEECGGGG-TTSSCCEEEEEEHHHH--------GGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH---TT
T ss_pred ----EEeeccccc-CCCcceEEEEECHHHH--------HHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh---cc
Confidence 347999998 59 9999999998873 33311 11223445788999998888862111 22
Q ss_pred HHHHHHHHHHHHHHHHH----hCC-CeeeCCCCceEEEEEcCC--CC--------hHHHHHHHHHhcCeEEeCCCCcCCC
Q 013521 350 VIDYYKENAKIIVDAFQ----SLG-LKVNGGKNAPYVWVQFPG--SS--------SWDVFAEILEKTHILTIPGSGFGPG 414 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~----~~g-~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~ll~~~gi~v~pg~~f~~~ 414 (441)
+.++++++.+.+.+.|. +++ +.... ..|.++++.+.. .. ..++...+++ +||.+.|+..|.+.
T Consensus 343 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~~ 420 (452)
T 3n5m_A 343 LIERSAQMGSLLLEQLKEEIGEHPLVGDIR-GKGLLVGIELVNDKETKEPIDNDKIASVVNACKE-KGLIIGRNGMTTAG 420 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEEE-ESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHH-TTEECEECTTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-EEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHH-CCcEEeecCcccCC
Confidence 34444444455544444 332 33333 467777887731 11 1356666665 59999999888766
Q ss_pred CCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 415 GNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 415 ~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.+++|||+ +..+++++++++++|++++
T Consensus 421 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 449 (452)
T 3n5m_A 421 YNNILTLAPPLVISSEEIAFVIGTLKTAM 449 (452)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 68999997 4569999999999998763
No 142
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.96 E-value=7e-29 Score=247.65 Aligned_cols=346 Identities=9% Similarity=-0.028 Sum_probs=223.1
Q ss_pred CCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+++++|++.| ..++ ..++.+.+++.+.+.+... .|....+..++++++++++.+..+.+.++|++|+|++++
T Consensus 50 G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA 124 (460)
T 3gju_A 50 GRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAY-----YHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDA 124 (460)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSC-----CCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccc-----cccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHH
Confidence 4578998877 2223 3579999999998876432 232233444566667766665456778899999999999
Q ss_pred HHH-HHHhc--------CCCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCC-----CCCcc------
Q 013521 148 ISR-LQMLL--------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRP-----ENNFF------ 206 (441)
Q Consensus 148 l~~-l~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~-----~~~~~------ 206 (441)
+.. +..+. .+++.|++.+|+|+++...+...+....+.. .......+..++... +.+..
T Consensus 125 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 204 (460)
T 3gju_A 125 NETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQ 204 (460)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHH
Confidence 997 54444 2569999999999998766655543211000 000001344444321 00111
Q ss_pred ---CCCCC-----C-CCccEEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc
Q 013521 207 ---PDLST-----T-SRTDIIFFCSPNNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276 (441)
Q Consensus 207 ---~~~~~-----~-~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
.++++ . +++++|+++.++|++|. +++++.+++|.++|++||+++|+||+|..|...+.........-.++
T Consensus 205 ~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pd 284 (460)
T 3gju_A 205 HCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPD 284 (460)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCC
Confidence 11221 1 34555554444777776 77899999999999999999999999998765543222222222233
Q ss_pred eeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHH-------HhhhcCCCcHHHHHHHHHhcCCCc-HHHH
Q 013521 277 VAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI-------VCTCFNGASNIVQAGGLACLSPDG-FQAL 347 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~-~~~~ 347 (441)
+.+|||.++ +| +|+||++++++++ +.+... ......+.+++++.++.++++... ...+
T Consensus 285 ----i~t~sK~l~-gG~~~lg~v~~~~~i~--------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 351 (460)
T 3gju_A 285 ----LITIAKGLT-SAYAPLSGVIVADRVW--------QVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLV 351 (460)
T ss_dssp ----EEEECGGGT-TTSSCCEEEEEEHHHH--------HHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred ----eeeeehhhc-CCCCCeEEEEECHHHH--------HHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHH
Confidence 347899997 67 8999999998873 444321 222344578899999998887211 1334
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCceEEEEEcCCCC------------hHHHHHHHHHhcCeEEeCCCCcCCC
Q 013521 348 RTVIDYYKENAKIIVDAFQSLG-LKVNGGKNAPYVWVQFPGSS------------SWDVFAEILEKTHILTIPGSGFGPG 414 (441)
Q Consensus 348 ~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ll~~~gi~v~pg~~f~~~ 414 (441)
++.++..+..++.+.+.+++++ +.... ..|.++++++.... ..++...++++ ||.+.|+.
T Consensus 352 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----- 424 (460)
T 3gju_A 352 TNAGETGAYFRAELAKAVGGHKNVGEVR-GDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAAS-GVIGRAMP----- 424 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTEEEEE-EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEECS-----
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEe-eeeEEEEEEEccCccccccccchHHHHHHHHHHHHHC-CeEEecCC-----
Confidence 5666666666666666666663 33333 35778888875211 33556666655 99999865
Q ss_pred CCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 415 GNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 415 ~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
..+++||+ +..+++++++++++|++++
T Consensus 425 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 453 (460)
T 3gju_A 425 QGDILGFAPPLCLTREQADIVVSKTADAV 453 (460)
T ss_dssp SSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35799999 5669999999999998763
No 143
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.96 E-value=2.9e-29 Score=249.05 Aligned_cols=342 Identities=13% Similarity=0.083 Sum_probs=216.1
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG-DEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~ 146 (441)
++.++|++.+.+ ++. .++.+.+++.+.+.+. .+|+...+..++++++++++.+.++... ++|++|+|+++
T Consensus 42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~------~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggse 115 (439)
T 3dxv_A 42 GRELIDLSGAWGAASLGYGHPAIVAAVSAAAANP------AGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSD 115 (439)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC------SCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhc------cCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHH
Confidence 457899998876 333 7899999999988753 2344445667778888888776555555 79999999999
Q ss_pred HHHH-HHHh--cCCCCEEEEeCCCchhhHhHHHHhccccc--cccc-cCccceeEEeecCCCCCc------cCCCC----
Q 013521 147 DISR-LQML--LGSNVTVAVQDPSFPAYIDTSVIVGQAGK--FLKE-TGKYRNIVYMNCRPENNF------FPDLS---- 210 (441)
Q Consensus 147 al~~-l~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~--~~~~-~~~~~~v~~v~~~~~~~~------~~~~~---- 210 (441)
++.. +..+ +.+++.|++.+|+|++....+...+.... +... ......+..++.+..... ..+++
T Consensus 116 a~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 195 (439)
T 3dxv_A 116 ANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLA 195 (439)
T ss_dssp HHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHH
Confidence 9997 4433 34667899999999887655544432110 0000 000001223333211000 01111
Q ss_pred -C-CCCccEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcc
Q 013521 211 -T-TSRTDIIFFCSPNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKF 287 (441)
Q Consensus 211 -~-~~~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~ 287 (441)
. .+++++|+++.++|++|.+. +++.+++|.++|++||+++|+||+|.+|...+.+.........++ +.||||.
T Consensus 196 ~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~d----i~s~sK~ 271 (439)
T 3dxv_A 196 AVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPD----ILVLGKG 271 (439)
T ss_dssp TSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCS----EEEECGG
T ss_pred hcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCC----EEEEcch
Confidence 1 24567777766688888765 555699999999999999999999997655443222222221233 2289999
Q ss_pred cCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 013521 288 AGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS 367 (441)
Q Consensus 288 ~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 367 (441)
++ +|+|+||++++++++ +.+......... .+++++.++.++++.... +.+.++++++++.+.+.|.+
T Consensus 272 ~~-~G~riG~~~~~~~~~--------~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~ 338 (439)
T 3dxv_A 272 LG-GGLPLSAVIAPAEIL--------DCASAFAMQTLH-GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGLSE 338 (439)
T ss_dssp GG-TTSCCEEEEEEHHHH--------TSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHH
T ss_pred hc-CCcceEEEEECHHHH--------hhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHH
Confidence 98 799999999998774 222222222334 688888888888762111 23344455555555555543
Q ss_pred ----CC-CeeeCCCCceEEEEEcC--------C-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHH
Q 013521 368 ----LG-LKVNGGKNAPYVWVQFP--------G-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYIS 431 (441)
Q Consensus 368 ----~g-~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~ 431 (441)
++ +...+ ..|.|+|+++. . ....++...++++ ||.+.|+.. ..+++||++ ..++++++
T Consensus 339 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~----~~~~iRi~~~~~~t~e~i~ 412 (439)
T 3dxv_A 339 LAKRHPLIGDIR-GRGLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGM----NGNVLEFTPPLTITETDIH 412 (439)
T ss_dssp HHHHCTTEEEEE-EETTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEEST----TSCEEEECCCTTCCHHHHH
T ss_pred HHHhCCCeEEEE-EEEEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCC----CCCEEEEECCCCCCHHHHH
Confidence 33 33333 46788888772 1 1234566777765 999999753 247999975 55899999
Q ss_pred HHHHHHHhhC
Q 013521 432 EACRRLKNFL 441 (441)
Q Consensus 432 ~~l~~l~~~l 441 (441)
+++++|++++
T Consensus 413 ~~l~~l~~~l 422 (439)
T 3dxv_A 413 KALDLLDRAF 422 (439)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 144
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.96 E-value=2.2e-29 Score=243.02 Aligned_cols=326 Identities=13% Similarity=0.109 Sum_probs=208.8
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC---CcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCc-HHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA---EQGNMALRTAIADKFYKDMGIE-GDEIFISDGA-QSD 147 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~-~~a 147 (441)
.++++..|.+ ++|+.+.+++.+.+.+..+ .+...|.. ..+..++.+++.+++.+.++++ +++|++|+|+ +++
T Consensus 3 ~~~~~~~g~~--~~p~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~a 79 (360)
T 1w23_A 3 QVFNFNAGPS--ALPKPALERAQKELLNFND-TQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQ 79 (360)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSSTT-SSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHH
T ss_pred ceEeecCCCc--CCCHHHHHHHHHHhhhhcc-ccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHH
Confidence 3677877754 6789999999998754311 11111211 2333333444444443333665 5799999999 999
Q ss_pred HHH-HHHhcCC---CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCC-cc-CCCCC---CCCccEE
Q 013521 148 ISR-LQMLLGS---NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENN-FF-PDLST---TSRTDII 218 (441)
Q Consensus 148 l~~-l~~l~~~---gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~-~~-~~~~~---~~~~~~v 218 (441)
+.+ +..++.+ ||.|+++.++|... ..+...| +++.++++++++ .+ .++++ .+++++|
T Consensus 80 l~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~g-------------~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v 145 (360)
T 1w23_A 80 FTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAKLLG-------------ETHIAASTKANSYQSIPDFSEFQLNENDAYL 145 (360)
T ss_dssp HHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHHTTS-------------EEEEEEECGGGTSCSCCCGGGCCCCTTEEEE
T ss_pred HHHHHHHhcCCCCcccEEEecchhHHHH-HHHHHhC-------------CeEEeecccccCcCCccchHhhccCCCCCEE
Confidence 997 5677754 56677777676553 2334444 456666654222 22 22322 3679999
Q ss_pred EEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEE
Q 013521 219 FFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWT 298 (441)
Q Consensus 219 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l 298 (441)
++++|+||||.+++ ++. ++||+++|+|++|+.+.. +.++..+ .+++.|+||.+|++| +||+
T Consensus 146 ~~~~~~nptG~~~~--~i~------~~~~~~li~D~a~~~~~~---~~~~~~~------di~~~s~sK~~~~~G--~G~~ 206 (360)
T 1w23_A 146 HITSNNTIYGTQYQ--NFP------EINHAPLIADMSSDILSR---PLKVNQF------GMIYAGAQKNLGPSG--VTVV 206 (360)
T ss_dssp EEESEETTTTEECS--SCC------CCCSSCEEEECTTTTTSS---CCCGGGC------SEEEEETTTTTSCTT--CEEE
T ss_pred EEeCCCCCcceecc--ccc------ccCCceEEEechhhcCCC---CcCcccC------CEEEEEcccccCCCC--cEEE
Confidence 99999999999988 232 279999999999986432 2233222 388999999998666 9999
Q ss_pred EeeccccccCCch---hHHHHHHH--HhhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhCC-C-
Q 013521 299 VVPEELRYSNGYP---VIKDFNRI--VCTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQSLG-L- 370 (441)
Q Consensus 299 ~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g-~- 370 (441)
+++++++..-... ... +... ......+.+...+.++.++++..... ++++++++++++++.+.+.|++++ +
T Consensus 207 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 285 (360)
T 1w23_A 207 IVKKDLLNTKVEQVPTMLQ-YATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFY 285 (360)
T ss_dssp EEEHHHHCSCCTTCCGGGC-HHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSS
T ss_pred EEcHHHHhhcccCCcchhh-hhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 9998875221100 000 0000 11222345566666555555421111 468889999999999999999875 5
Q ss_pred eee-CC--CCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 371 KVN-GG--KNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 371 ~~~-~~--~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
... .+ ..++++|+++++. +..++.+.+ +++||.+.||..| +++|||++. .+++++++++++|+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~----~~~iRis~~~~~~~~~i~~~~~~l~~~ 356 (360)
T 1w23_A 286 VGHAEKGSRSLMNVTFNLRNEELNQQFLAKA-KEQGFVGLNGHRS----VGGCRASIYNAVPIDACIALRELMIQF 356 (360)
T ss_dssp EESSCGGGBCSSEEEEECSSHHHHHHHHHHH-HHTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccCCchhccCcEEEEEcCCCccHHHHHHHH-HHCCeeeecCCCC----CCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 543 12 2355999999742 234566664 4569999998754 578999985 4889999999999875
No 145
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.96 E-value=1.3e-27 Score=235.99 Aligned_cols=310 Identities=17% Similarity=0.175 Sum_probs=218.5
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC-CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHh
Q 013521 76 RLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA-EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQML 154 (441)
Q Consensus 76 ~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l 154 (441)
+|+.|+|+++.|+.+.+++.+.+.. . .|++ ..+..++|+++++++ +. ++|++|+|+++++.++...
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~----~---~y~~~~~~~~~l~~~la~~~----~~--~~v~~~~ggt~al~~~l~~ 86 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDS----Q---WLSNGGPLVREFEERVAGLA----GV--RHAVATCNATAGLQLLAHA 86 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHH----T---CCSSSCHHHHHHHHHHHHHH----TS--SEEEEESCHHHHHHHHHHH
T ss_pred cccccCCCCCChHHHHHHHHHHHhc----C---CcccCCHHHHHHHHHHHHHh----CC--CeEEEeCCHHHHHHHHHHH
Confidence 6899999998899999999998864 1 3766 678999999999997 43 5999999999999985444
Q ss_pred cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEEEEcCCCCcccc
Q 013521 155 LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 155 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v~i~~p~NPtG~ 229 (441)
+.+||+|++++|+|+++...+...| .+++.++++++ ++..|++ + .+++++|+++ ||||.
T Consensus 87 l~~gd~Vlv~~~~~~~~~~~~~~~G------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~~~---~~tG~ 150 (424)
T 2po3_A 87 AGLTGEVIMPSMTFAATPHALRWIG------------LTPVFADIDPD-TGNLDPDQVAAAVTPRTSAVVGV---HLWGR 150 (424)
T ss_dssp HTCCSEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TSSBCHHHHGGGCCTTEEEEEEE---CGGGC
T ss_pred cCCCCEEEECCCccHHHHHHHHHcC------------CEEEEEecCCC-cCCcCHHHHHHhhCcCCcEEEEE---CCCCC
Confidence 4589999999999999999988888 58899998753 3333322 2 3578888885 48999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee-cccccc
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP-EELRYS 307 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~-~~~~~~ 307 (441)
..+ +++|+++|++||++||+|++|+. +.+++ .++..+ .+ +++.||||..+++|+|+||++++ +++
T Consensus 151 ~~~---l~~i~~la~~~~~~li~Dea~~~g~~~~~--~~~~~~---~d--i~~~S~sk~K~l~~~~~G~~v~~~~~l--- 217 (424)
T 2po3_A 151 PCA---ADQLRKVADEHGLRLYFDAAHALGCAVDG--RPAGSL---GD--AEVFSFHATKAVNAFEGGAVVTDDADL--- 217 (424)
T ss_dssp CCC---HHHHHHHHHHTTCEEEEECTTCTTCEETT--EETTSS---SS--EEEEECCTTSSSCCSSCEEEEESCHHH---
T ss_pred cCC---HHHHHHHHHHcCCEEEEECccccCCeECC--eecccc---cC--EEEEeCCCCCCccCCCCeEEEeCCHHH---
Confidence 866 88999999999999999999994 55543 222222 23 89999995555567899999998 455
Q ss_pred CCchhHHHHHHHHhhhcC------------CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeC
Q 013521 308 NGYPVIKDFNRIVCTCFN------------GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNG 374 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 374 (441)
.+.+......... ..+.+.. ...+. ..+.++...++.+++++++.+.|+++ |+.+..
T Consensus 218 -----~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~a---a~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 287 (424)
T 2po3_A 218 -----AARIRALHNFGFDLPGGSPAGGTNAKMSEAAA---AMGLT--SLDAFPEVIDRNRRNHAAYREHLADLPGVLVAD 287 (424)
T ss_dssp -----HHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECC
T ss_pred -----HHHHHHHHhcCccccccccccCcCCCcCHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Confidence 3445443332110 1122222 22221 12445667777788888888999887 787765
Q ss_pred -CCCc----eEEEEEcC----CCChHHHHHHHHHhcCeEEeCCCCcCCC--------------C-------CCeEEEEe-
Q 013521 375 -GKNA----PYVWVQFP----GSSSWDVFAEILEKTHILTIPGSGFGPG--------------G-------NEHIRVSA- 423 (441)
Q Consensus 375 -~~~~----~~~~~~~~----~~~~~~~~~~ll~~~gi~v~pg~~f~~~--------------~-------~~~iRls~- 423 (441)
+.++ .++++.++ +.+..++.+.+ +++||.+.+. |.+. . ...||+++
T Consensus 288 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L-~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~ 364 (424)
T 2po3_A 288 HDRHGLNNHQYVIVEIDEATTGIHRDLVMEVL-KAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTG 364 (424)
T ss_dssp GGGGSCCCCCCEEEEECHHHHSSCHHHHHHHH-HHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCS
T ss_pred CCCCCccccEEEEEEECCccchhhHHHHHHHH-HHCCCceecc--cCCccccchhhhhcCCCCChhHHHHhcCEEEeeCC
Confidence 3232 23447776 34555666655 5569999872 2211 0 12277773
Q ss_pred -ecCHHHHHHHHHHHHhh
Q 013521 424 -FGHREYISEACRRLKNF 440 (441)
Q Consensus 424 -~~~~~~~~~~l~~l~~~ 440 (441)
..+++++++++++|+++
T Consensus 365 ~~~t~e~i~~~~~~L~~~ 382 (424)
T 2po3_A 365 TAIGDDDIRRVADLLRLC 382 (424)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 45899999999999875
No 146
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.96 E-value=1.1e-28 Score=244.37 Aligned_cols=333 Identities=15% Similarity=0.103 Sum_probs=209.6
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCC----cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAE----QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~----~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
.+.+.|+.+.++ ++|+.+.+++.+.+..... .....|... ....++|+++|+++ ++++++|++|+|++++
T Consensus 17 ~~~~~Ld~~~~~-~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNATT-PLEPEVIQAVTEAMKEAWG-NPSSSYVAGRKAKDIINTARASLAKMI----GGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTCC-CCCHHHHHHHHHHHHHCCS-CTTCSSHHHHHHHHHHHHHHHHHHHHH----TCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCccC-CCCHHHHHHHHHHHHHhcC-CCccCcHHHHHHHHHHHHHHHHHHHHc----CCCcCeEEEeCChHHH
Confidence 357899988876 6788999999998865211 111123111 12468888998886 7788999999999999
Q ss_pred HHH-HHHhc--------CCCCEEEEeCCCchhh-----------------HhHHHHhccccccccccCccceeEEeecCC
Q 013521 148 ISR-LQMLL--------GSNVTVAVQDPSFPAY-----------------IDTSVIVGQAGKFLKETGKYRNIVYMNCRP 201 (441)
Q Consensus 148 l~~-l~~l~--------~~gd~Vlv~~p~y~~~-----------------~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~ 201 (441)
+.+ +..++ ++||+|++++|+|+++ ...++..| .+++.++.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g------------~~v~~v~~~~ 158 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQV------------AEVTFVPVSK 158 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTS------------CEEEEECCCT
T ss_pred HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcC------------cEEEEEecCc
Confidence 997 45554 5899999999999865 22223345 4888898875
Q ss_pred CCCccCCCC---C--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcC----------cEEEEcccccccccCCCCC
Q 013521 202 ENNFFPDLS---T--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANG----------SIIVYDSAYAAYITDPSPR 266 (441)
Q Consensus 202 ~~~~~~~~~---~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~----------~~ii~De~~~~~~~~~~~~ 266 (441)
+++ ..+++ + .+++++|++++|+||||.+++ +++|.++|++++ +++|+|++|+.+. .+.
T Consensus 159 ~~~-~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~---~~~ 231 (432)
T 3a9z_A 159 VNG-QVEVEDILAAVRPTTCLVTIMLANNETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK---RRV 231 (432)
T ss_dssp TTS-SCCHHHHHHTCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT---SCC
T ss_pred ccC-CcCHHHHHHhccCCceEEEEECcccCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCC---ccc
Confidence 222 22322 1 357899999999999999999 567889999999 9999999998532 133
Q ss_pred cccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHH
Q 013521 267 SIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQA 346 (441)
Q Consensus 267 ~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 346 (441)
++.... . .+++.|+||++| +|+||++++++......................+.+.+.+.++.++++. ..++
T Consensus 232 ~~~~~~--~--d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~-~~~~ 303 (432)
T 3a9z_A 232 DVEDLG--V--DFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADL-VSEN 303 (432)
T ss_dssp CHHHHC--C--SEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHH-HHHH
T ss_pred ChhhcC--C--CEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHH-HHhh
Confidence 333331 2 267899999875 4699999987651100000000000001122234566777666666642 1235
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCeee--CC-----CCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcCCC--
Q 013521 347 LRTVIDYYKENAKIIVDAFQSL-GLKVN--GG-----KNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFGPG-- 414 (441)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~-----~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~-- 414 (441)
+++.+++++++++++.+.|+++ |+.+. .+ ..+..+++.+++ .+..++...+ .++.+.+|..|.+.
T Consensus 304 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~G~~~~~~~~ 380 (432)
T 3a9z_A 304 CETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQC---QTLLASVGASCHSDHE 380 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHC---SSEECBSSCGGGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHh---cCeEEeccccccCCCC
Confidence 7888999999999999999885 65442 22 123456667663 2344444432 37888888765331
Q ss_pred ----------------CCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 415 ----------------GNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 415 ----------------~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
..++|||++.. +++++++++++|+++
T Consensus 381 ~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~ 424 (432)
T 3a9z_A 381 DRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQA 424 (432)
T ss_dssp TSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 13799999854 799999999999875
No 147
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.96 E-value=1.7e-28 Score=244.12 Aligned_cols=343 Identities=12% Similarity=0.093 Sum_probs=218.0
Q ss_pred CCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcHH
Q 013521 71 DARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~~ 146 (441)
++.++|+..| ...+ ..++.+.+++.+.+.+.. +|....+..++++++++++.+.++.+ +++|++|+|+++
T Consensus 63 G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~------~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGse 136 (453)
T 4ffc_A 63 GNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFT------HTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAE 136 (453)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS------CCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHH
T ss_pred CCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhcc------ccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHH
Confidence 4578999877 3333 358999999999987632 23333345566666666666544543 589999999999
Q ss_pred HHHH-HHHhc--CCCCEEEEeCCCchhhHhHHHHhcccc-----ccccccCccceeEEeecCCC--C--Ccc--------
Q 013521 147 DISR-LQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAG-----KFLKETGKYRNIVYMNCRPE--N--NFF-------- 206 (441)
Q Consensus 147 al~~-l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~-----~~~~~~~~~~~v~~v~~~~~--~--~~~-------- 206 (441)
|+.. +.... ..++.|++.+++|+++...+..++... .+.... ..+..++.... + +..
T Consensus 137 A~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ 213 (453)
T 4ffc_A 137 AVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFA---PEVYRMPASYPLRDEPGLTGEEAARRA 213 (453)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCC---SSEEEECCCCTTTSCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCC---CCcEEeCCCccccCccccchHHHHHHH
Confidence 9997 43332 356899999999999876666554321 111000 13445554311 1 110
Q ss_pred -CCCCC--CCCccEEEEcCCCCccc--cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEE
Q 013521 207 -PDLST--TSRTDIIFFCSPNNPTG--HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEI 281 (441)
Q Consensus 207 -~~~~~--~~~~~~v~i~~p~NPtG--~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i 281 (441)
..+++ .++..++++++|.||+| ...+++.+++|.++|++||+++|+||+|.+|...+.........-.++ +
T Consensus 214 ~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pd----i 289 (453)
T 4ffc_A 214 ISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPD----I 289 (453)
T ss_dssp HHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS----E
T ss_pred HHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcc----h
Confidence 00111 23456677789988777 555888999999999999999999999998765543222222221222 5
Q ss_pred ecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHH
Q 013521 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKI 360 (441)
Q Consensus 282 ~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~ 360 (441)
.||||.++ +|+|+||++++++++ +.+.........+.++++|.++.++++.... ..+++.++..+..++.
T Consensus 290 ~t~sK~~~-~G~~~G~~~~~~~i~--------~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~ 360 (453)
T 4ffc_A 290 VTMAKGIA-GGMPLSAVTGRAELM--------DAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSR 360 (453)
T ss_dssp EEECGGGG-TTSSCEEEEEEHHHH--------TTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhc-CCcCeEEEEECHHHH--------hhhcccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 57999998 699999999998874 2233223334556789999999888862111 1223333333333344
Q ss_pred HHHHHHhCC-CeeeCCCCceEEEEEcCC--------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHH
Q 013521 361 IVDAFQSLG-LKVNGGKNAPYVWVQFPG--------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREY 429 (441)
Q Consensus 361 l~~~L~~~g-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~ 429 (441)
+.+.+++++ +.... ..|.++|+++.. ....++...+++ +||.+.|+..| .+++||++ ..++++
T Consensus 361 l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~~~~~~t~e~ 434 (453)
T 4ffc_A 361 LSALAEEVDIIGEVR-GRGAMLAIEIVKPGTLEPDAALTKSIAAEALS-QGVLILTCGTF----GNVIRLLPPLVIGDDL 434 (453)
T ss_dssp HHHHHHHCSSEEEEE-EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECTT----SCEEEECCCTTCCHHH
T ss_pred HHHHHhhCCCeEEEE-eeceEEEEEEecCcccCCCHHHHHHHHHHHHh-CCCEEecCCCC----CCEEEEECCCCCCHHH
Confidence 444444443 33333 357889988732 013455566665 59999997654 35899985 458999
Q ss_pred HHHHHHHHHhhC
Q 013521 430 ISEACRRLKNFL 441 (441)
Q Consensus 430 ~~~~l~~l~~~l 441 (441)
+++++++|++++
T Consensus 435 i~~~l~~l~~~l 446 (453)
T 4ffc_A 435 LDEGITALSDII 446 (453)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
No 148
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.96 E-value=2.5e-28 Score=243.61 Aligned_cols=345 Identities=8% Similarity=-0.028 Sum_probs=218.3
Q ss_pred CCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|++.| ...+ ..++.+.+++.+.+.+... +|....+..+.++++++++.+.++.+.++|++|+|++++
T Consensus 49 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA 123 (459)
T 4a6r_A 49 GNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPF-----YNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSES 123 (459)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSC-----CCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHH
T ss_pred CCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccc-----cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHH
Confidence 4568898877 3333 3578999999999876321 232333455677777777766567788999999999999
Q ss_pred HHH-HHHhcC--------CCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCC--C-CCc-c-------
Q 013521 148 ISR-LQMLLG--------SNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRP--E-NNF-F------- 206 (441)
Q Consensus 148 l~~-l~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~--~-~~~-~------- 206 (441)
+.. +..+.. +++.|++.+|+|+++...+...+....+.. .......+..++... . +.+ +
T Consensus 124 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~ 203 (459)
T 4a6r_A 124 VDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVV 203 (459)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHH
Confidence 997 544443 579999999999998766666553221100 000001333444221 0 000 0
Q ss_pred --CCCCC-----CCCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcce
Q 013521 207 --PDLST-----TSRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREV 277 (441)
Q Consensus 207 --~~~~~-----~~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
.++++ .++..++++++| +|++|. ++|++++++|.++|++||+++|+||+|.+|...+.........-.++
T Consensus 204 ~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pd- 282 (459)
T 4a6r_A 204 AARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPD- 282 (459)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS-
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCC-
Confidence 11111 113334555666 555555 55999999999999999999999999998765543222222322233
Q ss_pred eEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHH---HHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHH-H
Q 013521 278 AIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFN---RIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVI-D 352 (441)
Q Consensus 278 ~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~-~ 352 (441)
+.+|||.++.+|+|+||+++++++ ++.+. .......++.+++++.++.++++.... ..+++.+ +
T Consensus 283 ---i~t~sK~l~gg~~~lg~v~~~~~i--------~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~ 351 (459)
T 4a6r_A 283 ---LFTAAKGLSSGYLPIGAVFVGKRV--------AEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDD 351 (459)
T ss_dssp ---EEEECGGGGTTSSCCEEEEECHHH--------HHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHT
T ss_pred ---eeehhhhhcCCCCCccceeeCHHH--------HHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 336899997444999999999887 34454 223333445789999999988862111 2234444 3
Q ss_pred HHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcCCCC------------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeE
Q 013521 353 YYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGSS------------SWDVFAEILEKTHILTIPGSGFGPGGNEHI 419 (441)
Q Consensus 353 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~i 419 (441)
..+..++.+.+.|.++ .+.... ..|.|+++++.... ..++...++++ ||.+.|+. +++
T Consensus 352 ~~~~~~~~l~~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g-------~~i 422 (459)
T 4a6r_A 352 IGPYMQKRWRETFSRFEHVDDVR-GVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRN-NLIMRACG-------DHI 422 (459)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEE-EETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHT-TEECEEET-------TEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEE-EEEEEEEEEEecCccccccccchHHHHHHHHHHHHHC-CeEEecCC-------CEE
Confidence 3334444444455544 333443 35778888875211 34566666655 99999862 689
Q ss_pred EEE--eecCHHHHHHHHHHHHhhC
Q 013521 420 RVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 420 Rls--~~~~~~~~~~~l~~l~~~l 441 (441)
||+ +..+++++++++++|++++
T Consensus 423 Ri~~~~~~t~e~i~~~l~~l~~~l 446 (459)
T 4a6r_A 423 VSAPPLVMTRAEVDEMLAVAERCL 446 (459)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 999 4669999999999998763
No 149
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-27 Score=240.98 Aligned_cols=321 Identities=8% Similarity=-0.013 Sum_probs=230.3
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC--CCcEEEcCCcHHHHHH-HHHhcC-----
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE--GDEIFISDGAQSDISR-LQMLLG----- 156 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~--~~~I~~t~G~~~al~~-l~~l~~----- 156 (441)
..++.+.+++.+++..+.. ....+|....|..++++++++++.+.++.+ ++++++|+|+++++.+ +..+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCV-ANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSS-CBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhh-cCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence 3457888888888876543 234456666788999999999998867766 7899999999999987 555543
Q ss_pred CC---CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC-CCCccCC-CCC--CCCccEEEEcCCCCcccc
Q 013521 157 SN---VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP-ENNFFPD-LST--TSRTDIIFFCSPNNPTGH 229 (441)
Q Consensus 157 ~g---d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~-~~~--~~~~~~v~i~~p~NPtG~ 229 (441)
+| |+|+++.|+|+++...+..+| .+++.+++++ +..++++ +++ .+++++|++++|+||||.
T Consensus 154 ~g~~~~~Vi~~~~~h~~~~~~~~~~G------------~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~ 221 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAGFDKAAYYFG------------MKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGI 221 (497)
T ss_dssp SCCSSCEEEEETTSCHHHHHHHHHSC------------CEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCC
T ss_pred CCCCCceEEEeCCccHHHHHHHHHcC------------CeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCc
Confidence 46 899999999999999999998 5899999876 2222222 222 357899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEcccccccccC-----CCC-CcccccCCCcceeEEEecCCcccCCccceeEEEEeecc
Q 013521 230 AATWQQLKKLVEFAKANGSIIVYDSAYAAYITD-----PSP-RSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE 303 (441)
Q Consensus 230 ~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~-----~~~-~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~ 303 (441)
+.+ +++|.++|++||+++|+|++|+.+... +.+ .+-.... ..+.++++.|++|.++ +|.++||++++++
T Consensus 222 ~~~---l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~-~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~ 296 (497)
T 3mc6_A 222 ADD---IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFR-VPGVTSISCDTHKYGF-APKGSSVIMYRNS 296 (497)
T ss_dssp CCS---CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTT-STTCCEEEEETTTTTC-CCSSCEEEECSSH
T ss_pred CCC---HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcccccc-CCCCcEEEECchhhcC-CCCCceeEEecCH
Confidence 988 778999999999999999999854321 100 1011111 2344688999999875 8889999999876
Q ss_pred ccccCCchhHHHHHHHHhhhcC-----C------Cc---HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 013521 304 LRYSNGYPVIKDFNRIVCTCFN-----G------AS---NIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL- 368 (441)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~-----~------~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 368 (441)
.+.. ........+. . .+ ..++.+++..+. ...++++.++..++++++.+.|++.
T Consensus 297 ~~~~--------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~---~~~~~~~~~~~~~~~~~l~~~L~~~~ 365 (497)
T 3mc6_A 297 DLRM--------HQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG---ENGYIESCQEIVGAAMKFKKYIQENI 365 (497)
T ss_dssp HHHT--------TTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHh--------hhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6421 0000000000 0 00 334555555553 2345778888889999999999994
Q ss_pred -CCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee-cCHHHHHHHHHHHHhh
Q 013521 369 -GLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF-GHREYISEACRRLKNF 440 (441)
Q Consensus 369 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~-~~~~~~~~~l~~l~~~ 440 (441)
|+++..++.+.++++..++.+..++.+.|.++ ||.+.++.. +..+|+++. .+++++++++++|+++
T Consensus 366 ~g~~~~~~~~~~~v~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~-----~~~~ri~~~~~t~e~i~~~~~~L~~~ 433 (497)
T 3mc6_A 366 PDLDIMGNPRYSVISFSSKTLNIHELSDRLSKK-GWHFNALQK-----PVALHMAFTRLSAHVVDEICDILRTT 433 (497)
T ss_dssp TTCEECSCCCSSEEEEECTTTTHHHHHHHHHTT-TCBCEECCS-----SCCEEEECCTTTTCTHHHHHHHHHHH
T ss_pred CCEEEecCCCeeEEEEeCCCCCHHHHHHHHHhC-CEEEecCCC-----CCeEEEEEeCCCHHHHHHHHHHHHHH
Confidence 88887656777777787765667777777655 999877542 346899874 3788999999999875
No 150
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.96 E-value=4.4e-28 Score=242.29 Aligned_cols=380 Identities=11% Similarity=0.060 Sum_probs=235.4
Q ss_pred ccchhhhHHhhhhCCCCCccccccccccccccccCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHH
Q 013521 16 KATVPFTMDFFLSSRWPVPRHCTEVSRNVNMESLQSGYLFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMA 95 (441)
Q Consensus 16 ~~Tv~~a~~~l~~~g~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~ 95 (441)
++||..|+.+.+.+.+..-+. .|.-.. ...+..+ +. ..-..+++.+.|+.+..+ +.|+.+.+++.
T Consensus 24 ~~~~~~a~~l~~~d~l~~~r~-~f~~~~--~~~~~~~--~~---------~~~~~~~~~iyld~~~~g-~~p~~v~~~i~ 88 (465)
T 3e9k_A 24 PTDERVALHLDEEDKLRHFRE-CFYIPK--IQDLPPV--DL---------SLVNKDENAIYFLGNSLG-LQPKMVKTYLE 88 (465)
T ss_dssp TTSHHHHHHHHHTCTTGGGGG-GEECCB--GGGSTTC--CG---------GGSCTTCBCEECBTTTSC-CEETTHHHHHH
T ss_pred CccHHHHHHhcccCcHHHHHH-hcCCCC--ccccccc--cc---------ccccCCCCeEEecCCccC-CChHHHHHHHH
Confidence 899999988887777733222 222110 1111110 00 001123468889877654 45566666666
Q ss_pred HHHhhccCCCC---CCCCCC-CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCC---EEEEeCCC
Q 013521 96 EHAFALSTVKG---YKGYGA-EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNV---TVAVQDPS 167 (441)
Q Consensus 96 ~~~~~~~~~~~---~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd---~Vlv~~p~ 167 (441)
+.+..+..... ..+|.+ ..-..++++.+|+++ ++++++|++|+|+++++++ +..++++|| +|+++.|+
T Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~ 164 (465)
T 3e9k_A 89 EELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIV----GANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKA 164 (465)
T ss_dssp HHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHH----TCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTC
T ss_pred HHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHc----CCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCc
Confidence 66544331111 112222 123355777777775 8889999999999999998 567776665 49999999
Q ss_pred chhhHh----HHHHhccccccccccCccceeEEeecCCCCCccCCCCC--------CCCccEEEEcCCCCccccCCCHHH
Q 013521 168 FPAYID----TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--------TSRTDIIFFCSPNNPTGHAATWQQ 235 (441)
Q Consensus 168 y~~~~~----~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--------~~~~~~v~i~~p~NPtG~~~~~~~ 235 (441)
|++... .++..|.+.. ...+..++.+.+ +..+++. .+++++|++++||||||.+++
T Consensus 165 ~~s~~~~~~~~~~~~G~~~~-------~~~v~~~~~~~~--~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~--- 232 (465)
T 3e9k_A 165 FPSDHYAIESQLQLHGLNIE-------ESMRMIKPREGE--ETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFN--- 232 (465)
T ss_dssp CHHHHHHHHHHHHHTTCCHH-------HHEEEECCCTTC--SSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCC---
T ss_pred CCchHHHHHHHHHHcCCcce-------eeeEEEecCCCC--CccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeec---
Confidence 998544 4444563110 001233444332 2333221 157899999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchh---
Q 013521 236 LKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPV--- 312 (441)
Q Consensus 236 ~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~--- 312 (441)
+++|.++|++||+++|+|++|+.... +..+... +.++++.|++|.++.+..++|+++++++++..-....
T Consensus 233 l~~i~~la~~~g~~vi~D~a~~~g~~---~~~~~~~----~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~ 305 (465)
T 3e9k_A 233 IPAITKAGQAKGCYVGFDLAHAVGNV---ELYLHDW----GVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGW 305 (465)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTS---CCCHHHH----TCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCG
T ss_pred HHHHHHHHHHcCCEEEEEhhhhcCCc---CCchhhc----CCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCc
Confidence 78899999999999999999884211 2333222 3458999999999423337899999887742211000
Q ss_pred -----HHHHHH---------HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-----------
Q 013521 313 -----IKDFNR---------IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS----------- 367 (441)
Q Consensus 313 -----~~~~~~---------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----------- 367 (441)
...+.. .......+++.+...+..+++.......+++++++++++++++.+.|++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 385 (465)
T 3e9k_A 306 FGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKK 385 (465)
T ss_dssp GGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred cCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCC
Confidence 000000 0000111345555554455543111122688899999999999999987
Q ss_pred CCCeeeCCC----CceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe---ecCHHHHHHHHHHHHhh
Q 013521 368 LGLKVNGGK----NAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA---FGHREYISEACRRLKNF 440 (441)
Q Consensus 368 ~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~---~~~~~~~~~~l~~l~~~ 440 (441)
.|+++..+. .|.++|+.++ .+..++.+.|.++ ||.+... .+++||+++ +.+.++++++++.|+++
T Consensus 386 ~g~~~~~p~~~~~~g~~~~~~~~-~~~~~l~~~L~~~-Gi~v~~~------~~~~iRis~~~~~~t~edi~~~~~~l~~~ 457 (465)
T 3e9k_A 386 PVVNIITPSHVEERGCQLTITFS-VPNKDVFQELEKR-GVVCDKR------NPNGIRVAPVPLYNSFHDVYKFTNLLTSI 457 (465)
T ss_dssp -CEEECSCSSGGGBCSCEEEEEC-CTTCCHHHHHHTT-TEECEEE------TTTEEEEBCCTTTCCHHHHHHHHHHHHHH
T ss_pred CCeEEeCCCCHhhcccEEEEEec-CCHHHHHHHHHHC-CEEEecC------CCCEEEEeCcccCCCHHHHHHHHHHHHHH
Confidence 578877654 3788999887 3445677776655 9998732 357999996 34899999999999876
Q ss_pred C
Q 013521 441 L 441 (441)
Q Consensus 441 l 441 (441)
+
T Consensus 458 l 458 (465)
T 3e9k_A 458 L 458 (465)
T ss_dssp H
T ss_pred H
Confidence 3
No 151
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.96 E-value=2.2e-27 Score=232.45 Aligned_cols=317 Identities=15% Similarity=0.090 Sum_probs=209.1
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCC--cCcHHHHHHHHHHHhhhCCCC-CCcEEE-cCCcHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAE--QGNMALRTAIADKFYKDMGIE-GDEIFI-SDGAQSDI 148 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~-~~~I~~-t~G~~~al 148 (441)
.+++++.|. .++|+.+.+++.+.... .....++.+. ....++|+.++++ ++++ +++|++ |+|+++++
T Consensus 40 ~~~~~~~~~--~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~la~~----~g~~~~~~i~~~t~g~t~al 110 (398)
T 2fyf_A 40 RDGRFGSGP--SKVRLEQLQTLTTTAAA---LFGTSHRQAPVKNLVGRVRSGLAEL----FSLPDGYEVILGNGGATAFW 110 (398)
T ss_dssp SSCBCCSSS--CCCCHHHHHGGGTTTTT---TTTSCTTSHHHHHHHHHHHHHHHHH----TTCCTTCEEEEEETCHHHHH
T ss_pred CCccccCCC--CCCCHHHHHHHhhcCCC---ccCcCcCCHHHHHHHHHHHHHHHHH----hCCCCCceEEEeCCchhHHH
Confidence 456676553 35778888888763111 0111123221 1234556666655 4776 469999 99999999
Q ss_pred HH-HHHhcCCCCEEEEeCCCchh-hHhHHHHh--ccccccccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCC
Q 013521 149 SR-LQMLLGSNVTVAVQDPSFPA-YIDTSVIV--GQAGKFLKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPN 224 (441)
Q Consensus 149 ~~-l~~l~~~gd~Vlv~~p~y~~-~~~~~~~~--g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~ 224 (441)
++ +..++++| .+.+..+.|.. ....+... | .+++.++.+. ++..+.+..+++++|++++|+
T Consensus 111 ~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g------------~~~~~v~~~~--g~~~~~~i~~~~~~v~~~~~~ 175 (398)
T 2fyf_A 111 DAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNPFV------------GEPIIITSDP--GSAPEPQTDPSVDVIAWAHNE 175 (398)
T ss_dssp HHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCTTS------------CCCEEEECCT--TCCCCCCCCTTCSEEEEESEE
T ss_pred HHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCC------------CceEEEecCC--CCCCCccccCCCCEEEEeCcC
Confidence 98 67778887 23333333321 12233444 4 3677777762 333333334689999999999
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccc
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEEL 304 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~ 304 (441)
||||.+++.+++.++ +|+++|+|++|+.+.. +..+ . +..+++.|+||++|.+| ++||+++++++
T Consensus 176 nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~---~~~~---~---~~di~~~s~sK~~~~~g-g~g~l~~~~~~ 239 (398)
T 2fyf_A 176 TSTGVAVAVRRPEGS------DDALVVIDATSGAGGL---PVDI---A---ETDAYYFAPQKNFASDG-GLWLAIMSPAA 239 (398)
T ss_dssp TTTTEECCCCCCTTC------C-CEEEEECTTTTTTS---CCCG---G---GCSEEEECTTSTTCSCS-SEEEEEECHHH
T ss_pred CCcceecchHHhhhh------cCCeEEEEeccccCCc---ccCc---c---cCcEEEEecCcccCCCC-ceEEEEECHHH
Confidence 999999996666554 8999999999986432 2222 1 23488999999999665 69999999877
Q ss_pred cccCCchhHHHHHHH-----------------H----hhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHH
Q 013521 305 RYSNGYPVIKDFNRI-----------------V----CTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIV 362 (441)
Q Consensus 305 ~~~~~~~~~~~~~~~-----------------~----~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~ 362 (441)
+ +.+... . .....+.+...+.++.++++..... ++++++++++++++.+.
T Consensus 240 ~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~ 311 (398)
T 2fyf_A 240 L--------SRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLY 311 (398)
T ss_dssp H--------HHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred H--------HHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 4 222211 0 1223445666666666666421111 16788999999999999
Q ss_pred HHHHhC-CCeeeC--C--CCceEEEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHH
Q 013521 363 DAFQSL-GLKVNG--G--KNAPYVWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEAC 434 (441)
Q Consensus 363 ~~L~~~-g~~~~~--~--~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l 434 (441)
+.|+++ |+++.. + ..++++|++++ +.+..++.+.|.++ ||.+++|. ...+.+++||++. .+++++++++
T Consensus 312 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~--~~~~~~~iRis~~~~~t~e~i~~~~ 388 (398)
T 2fyf_A 312 SWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRAN-GIVDTEPY--RKLGRNQLRVAMFPAVEPDDVSALT 388 (398)
T ss_dssp HHHHHSTTEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHT-TCBCCSCC--TTTCSSEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHcCCceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHC-CcEEecCc--ccCCCCEEEEEecCCCCHHHHHHHH
Confidence 999988 888763 3 23448999996 44667787777766 99999873 3334679999985 4899999999
Q ss_pred HHHHhh
Q 013521 435 RRLKNF 440 (441)
Q Consensus 435 ~~l~~~ 440 (441)
++|+++
T Consensus 389 ~~l~~~ 394 (398)
T 2fyf_A 389 ECVDWV 394 (398)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 152
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.96 E-value=5.3e-27 Score=229.16 Aligned_cols=308 Identities=16% Similarity=0.103 Sum_probs=217.6
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
++|+|+. |. .|+.+.+++.+.+... .|.+..+..++++++|+++ +. +++++|+|+++++.+ +
T Consensus 9 ~~i~~~~--p~--~~~~~~~a~~~~~~~~-------~~~~~~~~~~l~~~la~~~----~~--~~~~~~~~gt~al~~~~ 71 (393)
T 1mdo_A 9 DFLPFSR--PA--MGAEELAAVKTVLDSG-------WITTGPKNQELEAAFCRLT----GN--QYAVAVSSATAGMHIAL 71 (393)
T ss_dssp CCBCSCC--CC--CCHHHHHHHHHHHHHT-------CCSSSHHHHHHHHHHHHHH----CC--SEEEEESCHHHHHHHHH
T ss_pred cccccCC--CC--CCHHHHHHHHHHHhcC-------CcCCChHHHHHHHHHHHHh----CC--CcEEEecChHHHHHHHH
Confidence 3677775 44 4577788998888641 2335678999999999997 43 489999999999998 5
Q ss_pred HHh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCCC
Q 013521 152 QML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPNN 225 (441)
Q Consensus 152 ~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~N 225 (441)
..+ +++||+|+++.|+|+++...+...| .+++.++.+++ ++..+++. .+++++|+++ |
T Consensus 72 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~~~---~ 135 (393)
T 1mdo_A 72 MALGIGEGDEVITPSMTWVSTLNMIVLLG------------ANPVMVDVDRD-TLMVTPEHIEAAITPQTKAIIPV---H 135 (393)
T ss_dssp HHTTCCTTCEEEEESSSCHHHHHHHHHTT------------CEEEEECBCTT-TCCBCHHHHHHHCCTTEEEECCB---C
T ss_pred HHcCCCCCCEEEeCCCccHhHHHHHHHCC------------CEEEEEeccCC-cCCCCHHHHHHhcCCCceEEEEe---C
Confidence 667 7999999999999999999988888 58899998754 33333321 2578888875 4
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEccccccc-ccCCCCCcccccCCCcceeEEEecCC--cccCCccceeEEEEee-
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAY-ITDPSPRSIYEIPGAREVAIEISSFS--KFAGFTGVRLGWTVVP- 301 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~~~~G~r~G~l~~~- 301 (441)
|||.+.+ +++|.++|+++|+++|+|++|+.. .+.+. + +. . .++++.||| |.+ +|.|+||++++
T Consensus 136 ~~G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~--~---~~-~--~d~~~~S~~k~K~l--~~~~~g~~~~~~ 202 (393)
T 1mdo_A 136 YAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKGR--H---IG-A--RGTAIFSFHAIKNI--TCAEGGIVVTDN 202 (393)
T ss_dssp GGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETTE--E---TT-S--SSEEEEECCTTSSS--CSSSCEEEEESC
T ss_pred CCCCcCC---HHHHHHHHHHcCCeEEEECccccCCeECCe--e---cC-C--CCeEEEeCCCCCcc--ccccceEEEeCC
Confidence 8999987 889999999999999999999963 33321 1 11 1 458999999 666 45599999997
Q ss_pred ccccccCCchhHHHHHHHHhhhc------------------------CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCF------------------------NGASNIVQAGGLACLSPDGFQALRTVIDYYKEN 357 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 357 (441)
+++ .+.+........ ...+.+...++...+ +.+++..++.+++
T Consensus 203 ~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l-----~~~~~~~~~~~~~ 269 (393)
T 1mdo_A 203 PQF--------ADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL-----QKLDALNARRAAI 269 (393)
T ss_dssp HHH--------HHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHH
T ss_pred HHH--------HHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 455 334433222110 112334333333333 2245566666778
Q ss_pred HHHHHHHHHhCCCeeeC-C-----CCceEEEEEcC----CCChHHHHHHHHHhcCeEEeCCCCcC-------------C-
Q 013521 358 AKIIVDAFQSLGLKVNG-G-----KNAPYVWVQFP----GSSSWDVFAEILEKTHILTIPGSGFG-------------P- 413 (441)
Q Consensus 358 ~~~l~~~L~~~g~~~~~-~-----~~~~~~~~~~~----~~~~~~~~~~ll~~~gi~v~pg~~f~-------------~- 413 (441)
++.+.+.|++.++++.. + .+++++|+.++ +.+..++.+.+.+ +||.+.+|..+. .
T Consensus 270 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~~~~~~~~ 348 (393)
T 1mdo_A 270 AAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKT-KGIGTGLHFRAAHTQKYYRERFPTLTL 348 (393)
T ss_dssp HHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHH-TTBCCBCCCCCGGGSHHHHHHSTTCCC
T ss_pred HHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHh-CCCCcccccCccccChhhhccCCccCC
Confidence 88899999887766542 2 34568999997 4466677777665 599999987441 0
Q ss_pred C-----CCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 414 G-----GNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 414 ~-----~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
. ...++|+++. .+++++++++++|+++
T Consensus 349 ~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~ 382 (393)
T 1mdo_A 349 PDTEWNSERICSLPLFPDMTESDFDRVITALHQI 382 (393)
T ss_dssp HHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 0 1357999985 4899999999999875
No 153
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.96 E-value=6.2e-28 Score=239.14 Aligned_cols=334 Identities=9% Similarity=0.041 Sum_probs=221.1
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++||..|.+ ++. .++.+.+++.+.+..... ....| +.....++++.+++++ + .++|++++|+++|
T Consensus 75 g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~sGseA 145 (439)
T 2oat_A 75 GRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTL--TSRAF-YNNVLGEYEEYITKLF----N--YHKVLPMNTGVEA 145 (439)
T ss_dssp CCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSC--CCTTS-EESSHHHHHHHHHHHH----T--CSEEEEESSHHHH
T ss_pred CCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCc--ccCcc-CCHHHHHHHHHHHHhc----C--CCEEEEeCCHHHH
Confidence 457899988753 455 889999999998875321 11123 3345677888888875 4 5899999999999
Q ss_pred HHH-HHHhc---------CCC-CEEEEeCCCchhhHh-HHHHhccc---cccccccCccceeEEeecCCCCCccCCCCCC
Q 013521 148 ISR-LQMLL---------GSN-VTVAVQDPSFPAYID-TSVIVGQA---GKFLKETGKYRNIVYMNCRPENNFFPDLSTT 212 (441)
Q Consensus 148 l~~-l~~l~---------~~g-d~Vlv~~p~y~~~~~-~~~~~g~~---~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~ 212 (441)
+.. +..+. .+| |.|++.+|+|++... .....|.. ..+.+.. .+++.++.++-+.+...+. .
T Consensus 146 ~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~---~~v~~~~~~d~~~le~~l~-~ 221 (439)
T 2oat_A 146 GETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFM---PGFDIIPYNDLPALERALQ-D 221 (439)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCC---TTEEEECSSCHHHHHHHTT-S
T ss_pred HHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCC---CCeEEeCCCCHHHHHHHhC-C
Confidence 987 44332 367 899999999988644 33333310 0000000 2455565431111111111 2
Q ss_pred CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCC
Q 013521 213 SRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 213 ~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
+++++|+ ++| +|+||. .+|.+.+++|.++|++||+++|+||+|.+|...+.........-.+| + .||||.++
T Consensus 222 ~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~D--i--~t~sK~l~- 295 (439)
T 2oat_A 222 PNVAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPD--I--VLLGKALS- 295 (439)
T ss_dssp TTEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS--E--EEECGGGG-
T ss_pred CCEEEEE-EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCc--E--EEeccccc-
Confidence 4566655 556 677896 56999999999999999999999999987655443222222221233 2 28999998
Q ss_pred cc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013521 291 TG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG 369 (441)
Q Consensus 291 ~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 369 (441)
+| +|+||++++++++ +.+.........+.+++.+.++.++++... + +...++++++++++.+.|++++
T Consensus 296 ~G~~~~G~v~~~~~~~--------~~l~~~~~~~t~~~~~~~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~l~ 364 (439)
T 2oat_A 296 GGLYPVSAVLCDDDIM--------LTIKPGEHGSTYGGNPLGCRVAIAALEVLE-E--ENLAENADKLGIILRNELMKLP 364 (439)
T ss_dssp TTSSCCEEEEECHHHH--------TTSCTTSSCCSSTTCHHHHHHHHHHHHHHH-H--TTHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCeEEEEECHHHH--------hccCCCCcccCCCcCHHHHHHHHHHHHHHh-h--hhHHHHHHHHHHHHHHHHHHhc
Confidence 79 9999999998764 222211122334568888888887775211 1 3466788888999999998765
Q ss_pred Cee--eCCCCceEEEEEcCC---CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 370 LKV--NGGKNAPYVWVQFPG---SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 370 ~~~--~~~~~~~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
+.. ..+..|+++|++++. .+..++...+++ +||.+.|+ +++++|+++ ..+++++++++++|++++
T Consensus 365 ~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~-~Gv~v~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 436 (439)
T 2oat_A 365 SDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRD-NGLLAKPT------HGDIIRFAPPLVIKEDELRESIEIINKTI 436 (439)
T ss_dssp TTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHH-TTEECCBS------SSSEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHH-CCeEEecC------CCCEEEEECccCCCHHHHHHHHHHHHHHH
Confidence 432 112367889999874 245677777776 49999884 357899975 468999999999998753
No 154
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.96 E-value=4.1e-28 Score=240.10 Aligned_cols=333 Identities=10% Similarity=0.067 Sum_probs=208.7
Q ss_pred CCCeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|. .++. .++.+.+++.+.+.+... ....| +.....++++.+++++ + .++|++|+|+++|
T Consensus 64 G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~--~~~~~-~~~~~~~l~~~la~~~----g--~~~v~~~~sGseA 134 (433)
T 1z7d_A 64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTI--CSRAF-FSVPLGICERYLTNLL----G--YDKVLMMNTGAEA 134 (433)
T ss_dssp CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSC--CCTTS-EEHHHHHHHHHHHHHH----T--CSEEEEESSHHHH
T ss_pred CCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCC--ccCCc-CCHHHHHHHHHHHhhc----C--CCeEEEeCCHHHH
Confidence 45788988763 4555 789999999998875321 11123 3334566677777664 4 5899999999999
Q ss_pred HHH-HHHhc---------CCC-CEEEEeCCCchhhHhH-HHHhccccc---cccccCccceeEEeecCCCCCccCCCCCC
Q 013521 148 ISR-LQMLL---------GSN-VTVAVQDPSFPAYIDT-SVIVGQAGK---FLKETGKYRNIVYMNCRPENNFFPDLSTT 212 (441)
Q Consensus 148 l~~-l~~l~---------~~g-d~Vlv~~p~y~~~~~~-~~~~g~~~~---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~ 212 (441)
+.. +..+. .+| |.|++.+|+|++.... ....|.... +.+. ..++..++.++-+.+...+. .
T Consensus 135 ~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~---~~~v~~~~~~d~~~le~~l~-~ 210 (433)
T 1z7d_A 135 NETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPF---APQFSKVPYDDLEALEEELK-D 210 (433)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTCCEEEEETTC-----------------------------CEEEECTTCHHHHHHHHT-S
T ss_pred HHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCC---CCCeEEeCCCCHHHHHHHhC-C
Confidence 987 43321 467 9999999999886443 333231000 0000 01445555421111100011 2
Q ss_pred CCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCC
Q 013521 213 SRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 213 ~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
+++++|+ ++| +|+||.+ +|.+.+++|.++|++||+++|+||+|..|...+.........-.+| + .||||.+|
T Consensus 211 ~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~d--i--~t~sK~l~- 284 (433)
T 1z7d_A 211 PNVCAFI-VEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPD--V--ILLGKALS- 284 (433)
T ss_dssp TTEEEEE-ECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS--E--EEECGGGG-
T ss_pred CCEEEEE-EECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCC--E--EEECcccc-
Confidence 4666655 455 6779975 7889999999999999999999999987655443222222221233 2 38999998
Q ss_pred cc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-
Q 013521 291 TG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL- 368 (441)
Q Consensus 291 ~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 368 (441)
+| +|+||++++++++ +.+.........+.+++++.++.++++... + +.+.++++++++++.+.|+++
T Consensus 285 ~G~~~~G~v~~~~~~~--------~~l~~~~~~~t~~~~~~~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~l~ 353 (433)
T 1z7d_A 285 GGHYPISAVLANDDIM--------LVIKPGEHGSTYGGNPLAASICVEALNVLI-N--EKLCENAEKLGGPFLENLKREL 353 (433)
T ss_dssp TTSSCCEEEEECHHHH--------TTCCTTCCCCTTTTCHHHHHHHHHHHHHHH-H--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECHHHH--------hhhccccccccCCCCHHHHHHHHHHHHHHH-h--ccHHHHHHHHHHHHHHHHHHHH
Confidence 89 9999999998764 222211122334568888888887775211 1 245667777788888877764
Q ss_pred -CCee--eCCCCceEEEEEcCCC--ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 369 -GLKV--NGGKNAPYVWVQFPGS--SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 369 -g~~~--~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
++.. ..+..|+++|++++.. +..++...+++ +||.+.|+ +.+++|+++ ..+++++++++++|+++
T Consensus 354 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~-~Gv~v~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~~~ 425 (433)
T 1z7d_A 354 KDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKE-NGLITRDV------HDKTIRLTPPLCITKEQLDECTEIIVKT 425 (433)
T ss_dssp TTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHH-TTEECCEE------TTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHHH-CCeEEecC------CCCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 3321 1123678899999742 45677777776 59999885 357899975 45899999999999875
No 155
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.96 E-value=4.6e-28 Score=240.99 Aligned_cols=340 Identities=11% Similarity=0.059 Sum_probs=216.5
Q ss_pred CCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC-CCcEEEcCCcHH
Q 013521 71 DARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE-GDEIFISDGAQS 146 (441)
Q Consensus 71 ~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~I~~t~G~~~ 146 (441)
++.++|+..| ...+ ..++.+.+++.+.+.+. .+|....+..+++.++++++.+..+.. +++|++|+|+++
T Consensus 60 g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~------~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGse 133 (451)
T 3oks_A 60 GNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF------THTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSE 133 (451)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC------SCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHH
T ss_pred CCEEEEcCCCccccccCCCCHHHHHHHHHHHHhc------ccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHH
Confidence 4568998877 3333 35899999999988643 234333455667777777776544443 579999999999
Q ss_pred HHHH-HHHhc--CCCCEEEEeCCCchhhHhHHHHhcccc-----ccccccCccceeEEeecCCC--C---Ccc------C
Q 013521 147 DISR-LQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAG-----KFLKETGKYRNIVYMNCRPE--N---NFF------P 207 (441)
Q Consensus 147 al~~-l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~-----~~~~~~~~~~~v~~v~~~~~--~---~~~------~ 207 (441)
|+.. +.... ..++.|++.+++|+++...+..++... .+.+.. ..+..++.... . +.. .
T Consensus 134 A~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~ 210 (451)
T 3oks_A 134 AVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFA---PEIYRAPLSYPFRDAEFGKELATDGEL 210 (451)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCC---SSEEEECCCCHHHHGGGCTTTTTCHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCC---CCcEEeCCCccccccccccccchhhHH
Confidence 9997 43333 245899999999999876666554321 011000 14455554310 0 000 0
Q ss_pred CC-------CC--CCCccEEEEcCCCCccc--cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc
Q 013521 208 DL-------ST--TSRTDIIFFCSPNNPTG--HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276 (441)
Q Consensus 208 ~~-------~~--~~~~~~v~i~~p~NPtG--~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
++ ++ .++..++++++|.|++| ...+++.+++|.++|++||+++|+||+|.+|...+.........-.++
T Consensus 211 ~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd 290 (451)
T 3oks_A 211 AAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPD 290 (451)
T ss_dssp HHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred HHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCC
Confidence 01 10 12445667778866665 445778899999999999999999999998765543322322322233
Q ss_pred eeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013521 277 VAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKE 356 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 356 (441)
+.||||.++ +|+|+||++++++++ +.+.........+.++++|.++.++++.... +.+.+++++
T Consensus 291 ----i~t~sK~l~-~G~~iG~v~~~~~~~--------~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~ 354 (451)
T 3oks_A 291 ----LIVTAKGIA-GGLPLSAVTGRAEIM--------DSPHVSGLGGTYGGNPIACAAALATIETIES---EGLVARAQQ 354 (451)
T ss_dssp ----EEEECGGGG-TTSSCEEEEEEHHHH--------TCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHH
T ss_pred ----eeeehhhhh-CCcceEEEEECHHHH--------hhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHH
Confidence 338999998 699999999998874 2232223344556789999998888862111 223344444
Q ss_pred HHHHHHHHH----HhCC-CeeeCCCCceEEEEEcCC--------CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe
Q 013521 357 NAKIIVDAF----QSLG-LKVNGGKNAPYVWVQFPG--------SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA 423 (441)
Q Consensus 357 ~~~~l~~~L----~~~g-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~ 423 (441)
+.+++.+.| ++++ +.... ..|.++|+.+.. ....++...+++ +||.+.|+..| .+++||++
T Consensus 355 ~~~~l~~~L~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~~ 428 (451)
T 3oks_A 355 IEKIMKDRLGRLQAEDDRIGDVR-GRGAMIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLSCGTY----GNVVRFLP 428 (451)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEE-EETTEEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT----SCEEEECC
T ss_pred HHHHHHHHHHHHHhhCCCeEEEE-EeeEEEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEecCCCC----CCEEEEEC
Confidence 444444444 4443 33333 357788888732 113445566665 59999997654 35899985
Q ss_pred --ecCHHHHHHHHHHHHhhC
Q 013521 424 --FGHREYISEACRRLKNFL 441 (441)
Q Consensus 424 --~~~~~~~~~~l~~l~~~l 441 (441)
..+++++++++++|++++
T Consensus 429 ~~~~t~e~i~~~l~~l~~~l 448 (451)
T 3oks_A 429 PLSIGDDLLNEGLDVLEEVL 448 (451)
T ss_dssp CTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 458999999999998763
No 156
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.96 E-value=1.5e-28 Score=243.59 Aligned_cols=332 Identities=11% Similarity=0.108 Sum_probs=208.5
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..+.. .+. .+|.+.+++.+.+.+. ....| +.....+|++++++++ + .+++|++|+|++++
T Consensus 54 g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~-~~~~~~~l~~~la~~~----~-~~~~v~~~~sGsea 123 (434)
T 3l44_A 54 GNKYIDYLAAYGPIITGHAHPHITKAITTAAENG----VLYGT-PTALEVKFAKMLKEAM----P-ALDKVRFVNSGTEA 123 (434)
T ss_dssp CCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHC----SCCSS-CCHHHHHHHHHHHHHC----T-TCSEEEEESSHHHH
T ss_pred CCEEEECCCchhccccCCCCHHHHHHHHHHHHhC----cCCCC-CCHHHHHHHHHHHHhC----C-CCCEEEEeCchHHH
Confidence 567899987752 333 5899999999988752 22234 4556778888888874 4 68999999999999
Q ss_pred HHH-HHHhc--CCCCEEEEeCCCchhhHhHHHHhcccccccc---ccCc-----cceeEEeecCCCCCccCCCCC----C
Q 013521 148 ISR-LQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK---ETGK-----YRNIVYMNCRPENNFFPDLST----T 212 (441)
Q Consensus 148 l~~-l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~---~~~~-----~~~v~~v~~~~~~~~~~~~~~----~ 212 (441)
+.. +..+. .+++.|++.+|+|+++...+...+..+.... .... ..++..+|.++ ..++++ .
T Consensus 124 ~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~le~~l~~~ 199 (434)
T 3l44_A 124 VMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNN----VETLKEALDKW 199 (434)
T ss_dssp HHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTC----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCccc----HHHHHHHHHhC
Confidence 997 44443 3778999999999987554443332111000 0000 00233333321 111111 1
Q ss_pred -CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC
Q 013521 213 -SRTDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 -~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
+++++ ++++| +|++|.+. +++.+++|.++|++||+++|+||+|.+| ..+.........-.++ +.||||.++
T Consensus 200 ~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~~ 273 (434)
T 3l44_A 200 GHEVAA-ILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPD----LTALGKVIG 273 (434)
T ss_dssp GGGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCS----EEEEEGGGG
T ss_pred CCCEEE-EEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCC----eeehhhhhc
Confidence 23444 55566 55666655 8999999999999999999999999988 4332222222222233 458999998
Q ss_pred CccceeEEEEeeccccccCCchhHHHHHH---HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNR---IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
+|+|+||++++++++ +.+.. .......+.+++++.++.++++.... +.+.++++++++.+.+.|+
T Consensus 274 -~G~~iG~~~~~~~i~--------~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~ 341 (434)
T 3l44_A 274 -GGLPIGAYGGKKEIM--------EQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKGIL 341 (434)
T ss_dssp -TTSSCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHH
T ss_pred -CCcCeeeEEEcHHHH--------HhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHH
Confidence 999999999988774 22222 11223445788899888888762111 2233444444444444444
Q ss_pred ----hCCCeeeCCCCceEEEEEcCCC--C------------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHH
Q 013521 367 ----SLGLKVNGGKNAPYVWVQFPGS--S------------SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHRE 428 (441)
Q Consensus 367 ----~~g~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~ 428 (441)
++++....+..|.++++.+... . ..++...+++ +||.+.|+. .+++|+++..+++
T Consensus 342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~rl~~~~t~e 414 (434)
T 3l44_A 342 EQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSK------YEAWFLTTEHTKE 414 (434)
T ss_dssp HHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSST------TCCEECCTTCCHH
T ss_pred HHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecC------CCcEEEecccCHH
Confidence 3444322234677888877421 1 1445666665 499999864 3578998878999
Q ss_pred HHHHHHHHHHhhC
Q 013521 429 YISEACRRLKNFL 441 (441)
Q Consensus 429 ~~~~~l~~l~~~l 441 (441)
++++++++|++++
T Consensus 415 ~i~~~l~~l~~~l 427 (434)
T 3l44_A 415 DIEYTIEAVGRAF 427 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 157
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.96 E-value=8.1e-28 Score=240.49 Aligned_cols=312 Identities=16% Similarity=0.201 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcC----CCCE--
Q 013521 88 DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLG----SNVT-- 160 (441)
Q Consensus 88 ~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~----~gd~-- 160 (441)
+.+.+++.+.+.. +...|++..+..+||+++++++ +. ++|++|+|+++|+.+ +..+++ +||.
T Consensus 55 ~~v~~a~~~~~~~-----~~~~y~~~~~~~~l~~~la~~~----~~--~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~ 123 (467)
T 1ax4_A 55 NAMSDHQWAAMIT-----GDEAYAGSRNYYDLKDKAKELF----NY--DYIIPAHQGRGAENILFPVLLKYKQKEGKAKN 123 (467)
T ss_dssp CCEEHHHHHHHHT-----CCCCSSSCHHHHHHHHHHHHHH----CC--CEEEEESSHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHHhh-----cccccccCccHHHHHHHHHHHc----CC--CcEEEcCCcHHHHHHHHHHHHHhhccCCCccc
Confidence 5566666666542 2336877789999999999997 33 799999999999997 666677 9998
Q ss_pred -EEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC----C----CCccCCCCC-----C----CCccEEEEcC
Q 013521 161 -VAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP----E----NNFFPDLST-----T----SRTDIIFFCS 222 (441)
Q Consensus 161 -Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~----~----~~~~~~~~~-----~----~~~~~v~i~~ 222 (441)
|+++.+.|..+...+...| .+++.++... + .+...+++. . +++++|++++
T Consensus 124 ~viv~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~ 191 (467)
T 1ax4_A 124 PVFISNFHFDTTAAHVELNG------------CKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTV 191 (467)
T ss_dssp CEEEESSCCHHHHHHHHHTT------------CEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEES
T ss_pred eEEEeccccchhhHHHhccC------------CceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEec
Confidence 9998777788777777777 3555554321 0 011223221 1 2689999999
Q ss_pred CCCcc-ccCCCHHHHHHHHHHHHHcCcEEEEcccccc----c------ccCCCCCcccccC----CCcceeEEEecCCcc
Q 013521 223 PNNPT-GHAATWQQLKKLVEFAKANGSIIVYDSAYAA----Y------ITDPSPRSIYEIP----GAREVAIEISSFSKF 287 (441)
Q Consensus 223 p~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~----~------~~~~~~~~~~~~~----~~~~~~i~i~S~SK~ 287 (441)
||||| |.+++.+++++|+++|++||+++|+|+++.. | .+.+ .++..+. ...| +++.|+||.
T Consensus 192 ~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d--~~~~s~sK~ 267 (467)
T 1ax4_A 192 TCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKN--ATIKEVIFDMYKYAD--ALTMSAKKD 267 (467)
T ss_dssp SBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTT--CCHHHHHHHHGGGCS--EEEEETTST
T ss_pred cccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCC--Cchhhhhhhhccccc--eEEEecccc
Confidence 99999 8999999999999999999999999998652 0 1222 2222221 1122 566899999
Q ss_pred cCCc-cceeEEEEee-c-cccccCCchhHHHHHHHHhh-----hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 013521 288 AGFT-GVRLGWTVVP-E-ELRYSNGYPVIKDFNRIVCT-----CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAK 359 (441)
Q Consensus 288 ~~~~-G~r~G~l~~~-~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 359 (441)
+|++ | ||++++ + ++ .+.+...... .....+...+.++...+... .+ +...+...++++
T Consensus 268 ~g~~~G---g~~~~~d~~~l--------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~--~~~~~~~~~~~~ 333 (467)
T 1ax4_A 268 PLLNIG---GLVAIRDNEEI--------FTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG-TE--EEYLHYRIGQVK 333 (467)
T ss_dssp TCCSSC---EEEEESSCHHH--------HHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHH
T ss_pred CCCCcc---eEEEeCCHHHH--------HHHHHhhccccccccccCCccchHHHHHHHHHHHh-hh--hhHHHHHHHHHH
Confidence 9865 4 777777 4 45 3444333221 11122332222222233211 11 112233346678
Q ss_pred HHHHHHHhCCCeeeCCCCceEEEEE-------cCC--CChHHHHHHHHHhcCeEEeC-CCCc-CC---------CCCCeE
Q 013521 360 IIVDAFQSLGLKVNGGKNAPYVWVQ-------FPG--SSSWDVFAEILEKTHILTIP-GSGF-GP---------GGNEHI 419 (441)
Q Consensus 360 ~l~~~L~~~g~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~ll~~~gi~v~p-g~~f-~~---------~~~~~i 419 (441)
.+.+.|++.++.+..+.+++++|++ ++. .+..++...|++++||.+.| |+.| +. ...+++
T Consensus 334 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~i 413 (467)
T 1ax4_A 334 YLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFM 413 (467)
T ss_dssp HHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEE
T ss_pred HHHHHHHhCCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceE
Confidence 8888888777877777789999999 431 23566777775677999999 6542 21 124799
Q ss_pred EEEee---cCHHHHHHHHHHHHhh
Q 013521 420 RVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 420 Rls~~---~~~~~~~~~l~~l~~~ 440 (441)
||++. .+++++++++++|+++
T Consensus 414 Rls~~~~~~t~e~i~~~~~~l~~~ 437 (467)
T 1ax4_A 414 RLTIARRVYTNDHMDYIADALIGL 437 (467)
T ss_dssp EEECCTTSSCHHHHHHHHHHHHTT
T ss_pred EEecccccCCHHHHHHHHHHHHHH
Confidence 99985 5799999999999875
No 158
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.96 E-value=1.8e-27 Score=238.20 Aligned_cols=333 Identities=16% Similarity=0.160 Sum_probs=230.8
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC---CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA---EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDIS 149 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~ 149 (441)
.++.|+ +..+ ...+.+.+++.+.. ..+..|++ ..|..++++++++++.+.++.+. .+++|+|+++++.
T Consensus 67 ~~~~lg-~~~~-~~~p~v~~~~~~~~------~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~ 137 (474)
T 1wyu_B 67 TFYPLG-SCTM-KYNPKLHEEAARLF------ADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGEL 137 (474)
T ss_dssp SCCCBT-TTCC-CCCCHHHHHHHHTT------SSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHH
T ss_pred Cccccc-cccc-cCCHHHHHHHHHHH------HhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHH
Confidence 467788 5433 33345556665531 23344543 56888999999999887666654 4778899999887
Q ss_pred H-HHHh----cCCCC-----EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCC
Q 013521 150 R-LQML----LGSNV-----TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSR 214 (441)
Q Consensus 150 ~-l~~l----~~~gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~ 214 (441)
+ +..+ .++|| +|+++.|+|+.+...+...| .+++.++.+.++ ..|++. .++
T Consensus 138 ~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G------------~~vv~v~~~~~~--~~d~~~L~~~i~~~ 203 (474)
T 1wyu_B 138 TGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAG------------YQVREIPSGPEG--EVDLEALKRELGPH 203 (474)
T ss_dssp HHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTT------------CEEEEECBCTTS--SBCHHHHHHHCSTT
T ss_pred HHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCC------------CEEEEecCCCCC--CcCHHHHHHhhCCC
Confidence 5 4332 36887 99999999999999988888 589999986543 333221 367
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc-c-
Q 013521 215 TDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT-G- 292 (441)
Q Consensus 215 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~-G- 292 (441)
+++|++++| ||||.+. +++++|+++|++||+++|+|++|..+..+ ..+...+ +.++++.|+||+++.| |
T Consensus 204 t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g--~~~~~~~----g~di~~~s~~K~~~~p~g~ 274 (474)
T 1wyu_B 204 VAALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMG--WARPGDM----GFDVVHLNLHKTFTVPHGG 274 (474)
T ss_dssp EEEEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTT--TCCHHHH----TCSEEECCTTTTTCCCCTT
T ss_pred ceEEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhcc--CCCcccC----CCcEEEEeCccccccCCCC
Confidence 899999998 6899883 34999999999999999999999865542 1222222 2458899999999766 4
Q ss_pred --ceeEEEEeeccccccCCchhHH----HH----HHH---HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 013521 293 --VRLGWTVVPEELRYSNGYPVIK----DF----NRI---VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAK 359 (441)
Q Consensus 293 --~r~G~l~~~~~~~~~~~~~~~~----~~----~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 359 (441)
+|+||++++++++..-...... .+ ... ......+.+.+.+.++.+.+...+.++++++.++++++++
T Consensus 275 gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~ 354 (474)
T 1wyu_B 275 GGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNAR 354 (474)
T ss_dssp SCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999998874211000000 00 000 0001122566778878877764445677888999999999
Q ss_pred HHHHHHHhCCCeeeCCCCceE--EEEEcC-CCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec--CHHHHHHHH
Q 013521 360 IIVDAFQSLGLKVNGGKNAPY--VWVQFP-GSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG--HREYISEAC 434 (441)
Q Consensus 360 ~l~~~L~~~g~~~~~~~~~~~--~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~--~~~~~~~~l 434 (441)
++.+.|++.|+++..+ ++.+ +|+.++ +.+..++.++|+++ ||.+ |+..|.....+++||++.. +++++++++
T Consensus 355 ~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~ 431 (474)
T 1wyu_B 355 YLKELLKEKGYRVPYD-GPSMHEFVAQPPEGFRALDLAKGLLEL-GFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFA 431 (474)
T ss_dssp HHHHHHHHTTCBCSSC-SSCCSCEEEBCSTTCCHHHHHHHHHHT-TCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHH
T ss_pred HHHHHHhhcCcEecCC-CCcceEEEEEcCCCCCHHHHHHHHHHC-Cccc-cccccccccCCEEEEEeecCCCHHHHHHHH
Confidence 9999999888776332 2233 677774 34667788887766 9985 6666653346799999865 799999999
Q ss_pred HHHHhh
Q 013521 435 RRLKNF 440 (441)
Q Consensus 435 ~~l~~~ 440 (441)
++|+++
T Consensus 432 ~~L~~~ 437 (474)
T 1wyu_B 432 EAMGAL 437 (474)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 159
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.96 E-value=3.8e-27 Score=232.02 Aligned_cols=334 Identities=13% Similarity=0.089 Sum_probs=212.0
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhcc-C-CCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALS-T-VKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~-~-~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.++|..+++. .++.+.+++.+.+.... . ..+...|.......++++.+++++.+.+++++++|++++| ++++.+
T Consensus 26 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sG-t~a~~~ 102 (417)
T 3n0l_A 26 EGLEMIASENF--TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSG-SQANQG 102 (417)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHH
T ss_pred cCeeeecccCC--CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccH-HHHHHH
Confidence 36888766543 47889999988774321 0 0111123333344566665555555545888888999999 688887
Q ss_pred -HHHhcCCCCEEEEeCCCchhhHh---HHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C-CCccEEEE
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAYID---TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T-SRTDIIFF 220 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~-~~~~~v~i 220 (441)
+..++++||+|+++.|+|+++.. .....|.. ..++.++.+. ++..|++. . +++++|++
T Consensus 103 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~v~~ 170 (417)
T 3n0l_A 103 VYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKM----------YESCFYGVEL--DGRIDYEKVREIAKKEKPKLIVC 170 (417)
T ss_dssp HHHHHSCTTCEEEEECC----------------CC----------SEEEEECCCT--TSSCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHhcCCCCEEEecccccccccchhhhhhhhcce----------eeeEeccCCC--CCCcCHHHHHHHHHhcCCeEEEE
Confidence 67788999999999999988654 22222310 2456666652 33334332 1 47899998
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYA-AYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
++|+| |..++ +++|.++|++||+++|+||+|. .+.+.+..... + ++.++++.|+||.+ +|+|.||++
T Consensus 171 ~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~---~~~di~~~s~sK~l--~g~~~G~~~ 238 (417)
T 3n0l_A 171 GASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHPSP--F---PYAHVVSSTTHKTL--RGPRGGIIM 238 (417)
T ss_dssp CCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCC--T---TTCSEEEEESSTTT--CSCSCEEEE
T ss_pred CCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCCCc--c---ccceEEEeeCcccc--CCCCeeEEE
Confidence 88886 78888 8899999999999999999964 33333321111 1 12348999999988 688999999
Q ss_pred eec-cccccCCchhHHHHHHHHhhhcC-CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC-CC
Q 013521 300 VPE-ELRYSNGYPVIKDFNRIVCTCFN-GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNG-GK 376 (441)
Q Consensus 300 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~ 376 (441)
+++ ++ .+.+......... +++...+.++.+++......+++.++++++++++.+.+.|.+.|+.+.. +.
T Consensus 239 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 310 (417)
T 3n0l_A 239 TNDEEL--------AKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDGT 310 (417)
T ss_dssp ESCHHH--------HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC
T ss_pred ECCHHH--------HHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCCC
Confidence 984 54 3455544333222 2334444444444432112456788889999999999999988887754 24
Q ss_pred CceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcC----CCCCCeEEEEee------cCHHHHHHHHHHHHhhC
Q 013521 377 NAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFG----PGGNEHIRVSAF------GHREYISEACRRLKNFL 441 (441)
Q Consensus 377 ~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~----~~~~~~iRls~~------~~~~~~~~~l~~l~~~l 441 (441)
.++++|+.++. ..+.+.+..+++++||.+.++..+. +...+.+|+++. .+++++++++++|++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l 386 (417)
T 3n0l_A 311 DNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADIL 386 (417)
T ss_dssp SSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 56789999863 2234445556667799999765332 123467999962 35799999999998753
No 160
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.95 E-value=2.6e-27 Score=239.65 Aligned_cols=325 Identities=10% Similarity=0.065 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC--CcE--EEcCCcHHHHHH-HHHhcCCC----
Q 013521 88 DIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG--DEI--FISDGAQSDISR-LQMLLGSN---- 158 (441)
Q Consensus 88 ~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~--~~I--~~t~G~~~al~~-l~~l~~~g---- 158 (441)
+.+.+++.+.+..... ....+|....+..++++++++++.+.++.++ +++ ++|+|+++++.+ +..+.++|
T Consensus 110 ~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~ 188 (514)
T 3mad_A 110 EHHIAFLNEVYALQSQ-SNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATK 188 (514)
T ss_dssp HHHHHHHHHHHHHHTT-CCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh-cCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhc
Confidence 4455555555544332 2333455556778899999888887666654 788 999999999997 56666665
Q ss_pred ----CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCccccCC
Q 013521 159 ----VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPTGHAA 231 (441)
Q Consensus 159 ----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPtG~~~ 231 (441)
|+|+++.|+|+++...+...| .+++.++.+.+..++++ +++ .+++++|++++|+||||.+.
T Consensus 189 g~~~d~Vi~~~~~~~~~~~~~~~~G------------~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~ 256 (514)
T 3mad_A 189 GITAPEAVVPVSAHAAFDKAAQYFG------------IKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVD 256 (514)
T ss_dssp CCSSCEEEEETTSCTHHHHHHHHHT------------CEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCC
T ss_pred CCCCCeEEEeCccchHHHHHHHHcC------------CeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCcccc
Confidence 999999999999999999999 58999998764322221 211 35789999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccccC-----CCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYITD-----PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY 306 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~-----~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~ 306 (441)
+ +++|.++|++||+++|+|++|+.+... +.+.+.... ...+.++++.|++|.++ +|.++||++++++.+.
T Consensus 257 ~---l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~-~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~ 331 (514)
T 3mad_A 257 P---IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDF-RLEGVTSVSADTHKYGY-GAKGTSVILYRRPDLL 331 (514)
T ss_dssp C---HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCST-TSTTCCEEEECTTTTTC-CCSSCEEEEESSHHHH
T ss_pred C---HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccc-cCCCCcEEEECchhccC-CCCCeEEEEEeCHHHh
Confidence 9 789999999999999999999976541 111111111 12345688999999975 7889999999886641
Q ss_pred cCCchhHHHHH--HHHhhh-cCCCc---HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCce
Q 013521 307 SNGYPVIKDFN--RIVCTC-FNGAS---NIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAP 379 (441)
Q Consensus 307 ~~~~~~~~~~~--~~~~~~-~~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 379 (441)
.........+. ...... ..+.+ .+.+.+++..+. ..++++..++.+++++++.+.|+++ ++++..++ ..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~ 407 (514)
T 3mad_A 332 HYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLG---EEGYLDATRRILQAADRLKAGVRAIPSLKILGDP-LW 407 (514)
T ss_dssp TTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC-SS
T ss_pred ccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC-eE
Confidence 10000000000 000000 11122 233444443332 3456888889999999999999987 88887654 44
Q ss_pred EEEEEcCCCChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee---cCHHHHHHHHHHHHhh
Q 013521 380 YVWVQFPGSSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 380 ~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~---~~~~~~~~~l~~l~~~ 440 (441)
++|+..++.+..++.+.|.++ ||.+ +|..| ++++|+++. .+++++++++++|+++
T Consensus 408 ~~~~~~~~~~~~~l~~~L~~~-Gi~v-~g~~~----~~~~Ri~~~~~~~~~e~i~~~l~~L~~~ 465 (514)
T 3mad_A 408 VIAVASDELNIYQVMEEMAGR-GWRL-NGLHR----PPAFHVALTLRHTEPGVVDRFLADLQDA 465 (514)
T ss_dssp EEEEECSSSCHHHHHHHHHTT-TCBC-EEETT----TTEEEEECCGGGGSTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHhc-CCEe-ccCCC----CCeEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 788887665667777777665 9988 54433 468999974 2568999999999875
No 161
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.95 E-value=1.4e-27 Score=233.92 Aligned_cols=313 Identities=17% Similarity=0.097 Sum_probs=219.1
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
.++++|+.|.+++ ++.+.+++.+.+.. ..|.+..+..++++++|+++ +.+ ++++++|+++++.+
T Consensus 30 ~~~id~~~~~~~~--~~~v~~a~~~~~~~-------~~y~~~~~~~~l~~~la~~~----~~~--~~v~~~~Gt~a~~~~ 94 (399)
T 2oga_A 30 VPFLDLKAAYEEL--RAETDAAIARVLDS-------GRYLLGPELEGFEAEFAAYC----ETD--HAVGVNSGMDALQLA 94 (399)
T ss_dssp BCSCCHHHHHHHT--HHHHHHHHHHHHHH-------TCCSSSHHHHHHHHHHHHHT----TSS--EEEEESCHHHHHHHH
T ss_pred CcccccCcCCCCC--CHHHHHHHHHHHhc-------CCCCCchhHHHHHHHHHHHH----CCC--eEEEecCHHHHHHHH
Confidence 3678888887654 37888899888764 14666678899999999996 443 66777777899987
Q ss_pred HHHh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEEcCCC
Q 013521 151 LQML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFCSPN 224 (441)
Q Consensus 151 l~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~~p~ 224 (441)
+..+ +++||+|+++.|+|+++...+...| .+++.++.+++ ++..+++. .+++++|+ |+
T Consensus 95 l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~ 158 (399)
T 2oga_A 95 LRGLGIGPGDEVIVPSHTYIASWLAVSATG------------ATPVPVEPHED-HPTLDPLLVEKAITPRTRALL---PV 158 (399)
T ss_dssp HHHTTCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCSS-SSSBCHHHHHHHCCTTEEEEC---CB
T ss_pred HHHhCCCCcCEEEECCCccHHHHHHHHHCC------------CEEEEEecCCC-CCCcCHHHHHHhcCCCCeEEE---Ee
Confidence 6667 7999999999999999999888888 58888888753 23333221 24677766 57
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEEEcccccccc-cCCCCCcccccCCCcceeEEEecC--CcccCCccceeEEEEee
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEISSF--SKFAGFTGVRLGWTVVP 301 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~--SK~~~~~G~r~G~l~~~ 301 (441)
||||.+.+ +++|.++|+++|+++|+|++|+.+. ++. ..+..+ . .+++.|+ ||.+|.+| |+||++++
T Consensus 159 n~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~--~~~~~~---~--di~~~S~~~sK~~~~~G-~~g~~~~~ 227 (399)
T 2oga_A 159 HLYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRG--RRIGAG---S--SVAAFSFYPGKNLGCFG-DGGAVVTG 227 (399)
T ss_dssp CGGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETT--EETTCT---T--CEEEEECCTTSSSCCSS-CCEEEEES
T ss_pred CCcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCC--eecccc---c--CEEEEeCCCCccCCcCC-ceEEEEeC
Confidence 89999988 8899999999999999999998653 222 112111 1 3888898 79999669 99999987
Q ss_pred -ccccccCCchhHHHHHHHHhhhc------------CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 302 -EELRYSNGYPVIKDFNRIVCTCF------------NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 302 -~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+++ .+.+........ ...+.+.+.++.+.++ +++...++.+++++.+.+.|+++
T Consensus 228 ~~~~--------~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~ 294 (399)
T 2oga_A 228 DPEL--------AERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLA-----HLDSWNGRRSALAAEYLSGLAGL 294 (399)
T ss_dssp CHHH--------HHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHH--------HHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccC
Confidence 454 344544333211 1345666655555553 23445566667788888889876
Q ss_pred -CCeeeC-CCCceEEE--EEcCCCChHHHHHHHHHhcCeEEeCCCCcC--------CCC-------------CCeEEEEe
Q 013521 369 -GLKVNG-GKNAPYVW--VQFPGSSSWDVFAEILEKTHILTIPGSGFG--------PGG-------------NEHIRVSA 423 (441)
Q Consensus 369 -g~~~~~-~~~~~~~~--~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--------~~~-------------~~~iRls~ 423 (441)
|+.+.. +..+.++| +.+...+..++.+.|.+ +||.+.++.... ..+ .++|||++
T Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~ 373 (399)
T 2oga_A 295 PGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDA-RGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPI 373 (399)
T ss_dssp TTCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHH-TTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECC
T ss_pred CCccccCCCCCCcceeEEEEEECCCHHHHHHHHHH-CCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccC
Confidence 776642 34556665 33333355667677655 599998853210 000 26799997
Q ss_pred e--cCHHHHHHHHHHHHhh
Q 013521 424 F--GHREYISEACRRLKNF 440 (441)
Q Consensus 424 ~--~~~~~~~~~l~~l~~~ 440 (441)
. .++++++++++.|+++
T Consensus 374 ~~~~t~edi~~~~~~l~~~ 392 (399)
T 2oga_A 374 GPHLERPQALRVIDAVREW 392 (399)
T ss_dssp STTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3 4899999999999875
No 162
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.95 E-value=1.8e-27 Score=236.64 Aligned_cols=343 Identities=12% Similarity=0.023 Sum_probs=203.2
Q ss_pred CCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..|. ..+ ..++.+.+++.+.+.+.. .|....+..+.++++++++.+.++...++|++|+|+++|
T Consensus 43 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~------~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 116 (448)
T 3dod_A 43 GKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIA------HSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEA 116 (448)
T ss_dssp SCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCS------CCCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcc------CccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHH
Confidence 45688888763 222 257999999999886421 232334556677778877776566667899999999999
Q ss_pred HHH-HHHhcC----CC----CEEEEeCCCchhhHhHHHHhccccccccc-cCccceeEEeecCCCCCc------------
Q 013521 148 ISR-LQMLLG----SN----VTVAVQDPSFPAYIDTSVIVGQAGKFLKE-TGKYRNIVYMNCRPENNF------------ 205 (441)
Q Consensus 148 l~~-l~~l~~----~g----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~v~~v~~~~~~~~------------ 205 (441)
+.. +..+.. +| |.|++.+|+|+++.......+....+... ......+..++.......
T Consensus 117 ~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 196 (448)
T 3dod_A 117 MEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQC 196 (448)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHH
Confidence 997 544443 44 99999999999876554444321110000 000012344443221000
Q ss_pred cCCCCC-----CCCccEEEEcCCC-Cccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCccee
Q 013521 206 FPDLST-----TSRTDIIFFCSPN-NPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVA 278 (441)
Q Consensus 206 ~~~~~~-----~~~~~~v~i~~p~-NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~ 278 (441)
..++++ .+++++|++..++ |++| .+.+++.+++|.++|++||+++|+||+|.+|...+.........-.++
T Consensus 197 ~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~d-- 274 (448)
T 3dod_A 197 LRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPD-- 274 (448)
T ss_dssp HHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS--
T ss_pred HHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCC--
Confidence 011221 1345555544445 8888 556888899999999999999999999998765543322222221233
Q ss_pred EEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHH-------HHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHH
Q 013521 279 IEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNR-------IVCTCFNGASNIVQAGGLACLSPDGF-QALRT 349 (441)
Q Consensus 279 i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~ 349 (441)
+.+|||.++ +| +|+||++++++++ +.+.. .......+.+++++.++.++++.... ..+++
T Consensus 275 --i~t~sK~l~-~G~~~ig~v~~~~~~~--------~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 343 (448)
T 3dod_A 275 --LMAAGKGIT-GGYLPIAVTFATEDIY--------KAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQ 343 (448)
T ss_dssp --EEEECGGGG-TTSSCCEEEEEEHHHH--------HTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred --EEEeccccc-CCcCceEEEEECHHHH--------HHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHH
Confidence 447999998 69 5999999998873 33322 22223445788999998888862111 22334
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCC------------hHHHHHHHHHhcCeEEeCCCCcCCCCCC
Q 013521 350 VIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSS------------SWDVFAEILEKTHILTIPGSGFGPGGNE 417 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 417 (441)
.++..+..++.+.+ +.+++........|.++|+.++... ..++...++++ ||.+.|+ .+
T Consensus 344 ~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~-------~~ 414 (448)
T 3dod_A 344 VAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL-GMLTRPL-------GD 414 (448)
T ss_dssp HHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECCEE-------TT
T ss_pred HHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC-CcEEecc-------CC
Confidence 44444444444444 4444322222235778899886321 25677777765 9999886 26
Q ss_pred eEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 418 HIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 418 ~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
++||+ +..+++++++++++|++++
T Consensus 415 ~iRi~~~~~~t~e~i~~~l~~l~~~l 440 (448)
T 3dod_A 415 VIAFLPPLASTAEELSEMVAIMKQAI 440 (448)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 89996 4668999999999998763
No 163
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.95 E-value=4.4e-27 Score=235.62 Aligned_cols=339 Identities=14% Similarity=0.144 Sum_probs=223.2
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccC--CCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC----cEEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALST--VKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD----EIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~----~I~~t~G~~~ 146 (441)
+.|+|..+++ ++|+.+.+++.+.+.+... .++...|+...+..++++.+++++.+.++++++ +|++++|+ +
T Consensus 45 ~~i~L~a~e~--~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~ 121 (483)
T 1rv3_A 45 VGLELIASEN--FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-P 121 (483)
T ss_dssp SSEECCTTCC--CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-H
T ss_pred cCeEEEcCCC--CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-H
Confidence 4799987765 4688999999887764210 011112444445677887888888777788764 49999999 6
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhHhHH--------HHhccccccccccCccceeEEeecCCCCCccCCCCC-----C
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYIDTS--------VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T 212 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~--------~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~ 212 (441)
++.+ +.++++|||+|++++|+|.++.... ...|. ..+++.++++++ ++..|++. .
T Consensus 122 an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~----------~~~~v~~~~~~~-~~~iD~d~le~~i~ 190 (483)
T 1rv3_A 122 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSI----------FFESMAYKVNPD-TGYIDYDRLEENAR 190 (483)
T ss_dssp HHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHH----------HSEEEEECBCTT-TCSBCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccc----------eEEEEECccccC-CCcCCHHHHHHHHh
Confidence 6665 7888999999999999998875422 22221 024444444533 33444332 2
Q ss_pred -CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCC-CCcccccCCCcceeEEEecCCcccC
Q 013521 213 -SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPS-PRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 -~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
+++|+|++ +++||+ .+++ +++|.++|++||+++|+|++|.. +.+.+. +.++ + ...+++.|+||++
T Consensus 191 ~~~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~---~---~~div~~s~~K~l- 258 (483)
T 1rv3_A 191 LFHPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF---E---HCHVVTTTTHKTL- 258 (483)
T ss_dssp HHCCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG---G---TCSEEEEESSGGG-
T ss_pred hcCCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCC---C---CCcEEEecCcccC-
Confidence 68999998 899988 8888 88999999999999999999873 333222 2222 1 2248899999987
Q ss_pred CccceeEEEEeeccccccCCc-------hhHHHHHHHHh-hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWTVVPEELRYSNGY-------PVIKDFNRIVC-TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
+|+|.||+++++++...... ...+.+..... ....+++.....+..+++......+++.++++++++++++
T Consensus 259 -~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l 337 (483)
T 1rv3_A 259 -RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRAL 337 (483)
T ss_dssp -CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred -CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 58899999999874210000 01222222111 1112233333333333443211235678889999999999
Q ss_pred HHHHHhCCCeeeCCC-CceEEEEEcC--CCChHHHHHHHHHhcCeEEe----CCCCcCCCCCCeEEEEeec--C----HH
Q 013521 362 VDAFQSLGLKVNGGK-NAPYVWVQFP--GSSSWDVFAEILEKTHILTI----PGSGFGPGGNEHIRVSAFG--H----RE 428 (441)
Q Consensus 362 ~~~L~~~g~~~~~~~-~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~iRls~~~--~----~~ 428 (441)
.+.|.+.|+++..+. +.+++|+++. +.+..++ ..+|++.||.+. ||..+ +.+++++||++.. + ++
T Consensus 338 ~~~L~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~~-~~~L~~~gI~v~~~~~pg~~~-~~~~~~iRis~~~~~t~g~~~e 415 (483)
T 1rv3_A 338 SAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRA-EKVLEACSIACNKNTCPGDKS-ALRPSGLRLGTPALTSRGLLEK 415 (483)
T ss_dssp HHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHH-HHHHHHTTEECEEECCSSCSC-TTSCCEEEEECHHHHHTTCCHH
T ss_pred HHHHHhcCCEeccCCCCCceEEEeccCCCCCHHHH-HHHHHhCCcEEecCCCCCCCc-CCCCceEEeecCCcccCCCCHH
Confidence 999998899887643 3468899986 3344454 555667799999 98742 2246799999843 5 89
Q ss_pred HHHHHHHHHHhh
Q 013521 429 YISEACRRLKNF 440 (441)
Q Consensus 429 ~~~~~l~~l~~~ 440 (441)
++++++++|.++
T Consensus 416 di~~~~~~l~~~ 427 (483)
T 1rv3_A 416 DFQKVAHFIHRG 427 (483)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 164
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.95 E-value=7.2e-28 Score=239.93 Aligned_cols=330 Identities=12% Similarity=0.070 Sum_probs=201.5
Q ss_pred CCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++||+.+.+ ++ ..++.+.+++.+.+... . .| .+..++++++++++.+.++ .+++|++|+|+++|
T Consensus 56 g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~----~--~~---~~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~eA 125 (453)
T 2cy8_A 56 GNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHG----V--QY---AASHPLEVRWAERIVAAFP-SIRKLRFTGSGTET 125 (453)
T ss_dssp CCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTT----C--SS---CSSCHHHHHHHHHHHHHCT-TCSEEEEESCHHHH
T ss_pred CCEEEECcccHhhcccCCCCHHHHHHHHHHHHhC----C--CC---CCCCHHHHHHHHHHHhhCC-CCCEEEEeCCHHHH
Confidence 456899988853 22 36889999999988641 1 22 1356789999999877555 78899999999999
Q ss_pred HHH-HHH--hcCCCCEEEEeCCCchhhHhHHHH-hcc-------ccccccccCccceeEEeecCCCCCccCCCCC--C--
Q 013521 148 ISR-LQM--LLGSNVTVAVQDPSFPAYIDTSVI-VGQ-------AGKFLKETGKYRNIVYMNCRPENNFFPDLST--T-- 212 (441)
Q Consensus 148 l~~-l~~--l~~~gd~Vlv~~p~y~~~~~~~~~-~g~-------~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~-- 212 (441)
+.+ +.. .+.+++.|++.+|+|+++...+.. .|. .|. ... ....+..++.+ + ..++++ .
T Consensus 126 ~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~-~~~--~~~~~~~~~~~---d-~~~le~~l~~~ 198 (453)
T 2cy8_A 126 TLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGV-LPE--TTANTLLIRPD---D-IEGMREVFANH 198 (453)
T ss_dssp HHHHHHHHHHHHCCCEEEEECC-------------------------------CGGGEEEECTT---C-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCC-Ccc--ccCceeecCCC---C-HHHHHHHHHhc
Confidence 997 443 133456888888999987554322 111 010 000 00123444431 1 111221 1
Q ss_pred -CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC
Q 013521 213 -SRTDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 -~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
+++++| +++| +||||.++ +++++++|.++|++||+++|+||+|.++ ..+.........-.++ +.||||.++
T Consensus 199 ~~~~~~v-i~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~ 272 (453)
T 2cy8_A 199 GSDIAAF-IAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPD----LTCLAKASA 272 (453)
T ss_dssp GGGEEEE-EECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCS----EEEEEGGGG
T ss_pred CCCEEEE-EECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCc----EEEEChhhh
Confidence 245554 5666 57899765 7999999999999999999999999977 4332222212221233 348999998
Q ss_pred CccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP-DGFQALRTVIDYYKENAKIIVDAFQSL 368 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~ 368 (441)
+|+|+||++++++++..-... . ..........+.+++++.++.++++. . .+.+.++++++++++.+.|+++
T Consensus 273 -~G~~~G~v~~~~~~~~~l~~~--~-~~~~~~~~t~~~n~~~~aa~~aal~~~~----~~~~~~~~~~~~~~l~~~L~~~ 344 (453)
T 2cy8_A 273 -GGLPGGILGGREDVMGVLSRG--S-DRKVLHQGTFTGNPITAAAAIAAIDTIL----EDDVCAKINDLGQFAREAMNHL 344 (453)
T ss_dssp -TTSSCEEEEECHHHHTTSSSC--C----------CCCCHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcceEEEechHHHHHHhccc--c-CCCceeCCCCCCCHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHH
Confidence 699999999998774221000 0 00011222345788888888877753 2 1344566666777777666553
Q ss_pred ----CCeeeCCCCceEEEEEcCC-----C------------C---hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee
Q 013521 369 ----GLKVNGGKNAPYVWVQFPG-----S------------S---SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF 424 (441)
Q Consensus 369 ----g~~~~~~~~~~~~~~~~~~-----~------------~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~ 424 (441)
++....+..|.++|++++. . + ..++...+++ +||.+.|+ +.+|+++.
T Consensus 345 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv~v~~~--------~~~~l~~~ 415 (453)
T 2cy8_A 345 FARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGVDIGGR--------GSVFLSAQ 415 (453)
T ss_dssp HHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTEECBTT--------TEEECCTT
T ss_pred HhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH-CCeEEeCC--------CCEEeecc
Confidence 4433223467899999874 1 1 3456677765 59999653 24788877
Q ss_pred cCHHHHHHHHHHHHhh
Q 013521 425 GHREYISEACRRLKNF 440 (441)
Q Consensus 425 ~~~~~~~~~l~~l~~~ 440 (441)
.+++++++++++|+++
T Consensus 416 ~t~~~i~~~l~~l~~~ 431 (453)
T 2cy8_A 416 HEREHVEHLVTTFDRV 431 (453)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7999999999999875
No 165
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.95 E-value=4.6e-27 Score=231.91 Aligned_cols=335 Identities=16% Similarity=0.115 Sum_probs=199.6
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhh-ccCCCCCCCCCCCcCcHHHHHHHH-HHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFA-LSTVKGYKGYGAEQGNMALRTAIA-DKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~-~~~~~~~~~Y~~~~g~~~lr~~ia-~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
+.++|..+.+. .++.+.+++.+.+.+ +........|.+.....++.+.++ +++.+.++.+... ++++|+++++..
T Consensus 33 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-v~~~~Gs~a~~~ 109 (425)
T 3ecd_A 33 SQVELIASENI--VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHAN-VQPHSGAQANGA 109 (425)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHH
T ss_pred cceeeecccCC--CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCce-eecCchHHHHHH
Confidence 36888776653 388999999887742 110001111212112212333333 3333334665433 346777778876
Q ss_pred -HHHhcCCCCEEEEeCCCchhh-HhHHH--HhccccccccccCccceeEEeecCCCCCccCCCCC------CCCccEEEE
Q 013521 151 -LQMLLGSNVTVAVQDPSFPAY-IDTSV--IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTDIIFF 220 (441)
Q Consensus 151 -l~~l~~~gd~Vlv~~p~y~~~-~~~~~--~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~~v~i 220 (441)
+..++++||+|+++.|+|++. ..... ..|.. ..++.++.+++ .+..+++. .+++++|++
T Consensus 110 al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~v~~ 178 (425)
T 3ecd_A 110 VMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKW----------FNALQYGVSRD-TMLIDYDQVEALAQQHKPSLIIA 178 (425)
T ss_dssp HHHHHCCTTCEEEEECC----------------------------CEEEEECCCTT-TSSCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHccCCCCEEEEcccccccceecchhhhhcccc----------eeeeecCCCcc-cCccCHHHHHHHHhhcCCcEEEE
Confidence 677789999999999999882 22221 23310 24556666533 23334322 147899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
++|+||+ ..+ +++|.++|++||++||+||+|.. +.+.+...+... ...+++.|+||++ +|+|+||++
T Consensus 179 ~~~~~~~--~~~---l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-----~~di~~~s~sK~l--~g~~~g~~~ 246 (425)
T 3ecd_A 179 GFSAYPR--KLD---FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-----HAHVVTSTTHKTL--RGPRGGFVL 246 (425)
T ss_dssp ECSCCCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-----TCSEEEEESSGGG--CCCSCEEEE
T ss_pred ccccCCC--cCC---HHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-----cCcEEEecCCccc--CCCCcEEEE
Confidence 9999974 334 78999999999999999999653 333332222211 1238899999998 678999999
Q ss_pred eeccccccCCchhHHHHHHHHhhhcC-CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CC
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTCFN-GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG-KN 377 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~ 377 (441)
++++.+ .+.+......... +++...+.++..++.....++++.++++++++++++.+.|.+.|+++..+ ..
T Consensus 247 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 319 (425)
T 3ecd_A 247 TNDEEI-------AKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTD 319 (425)
T ss_dssp ESCHHH-------HHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred eCCHHH-------HHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCC
Confidence 986443 3444433322221 23333333333333221224567888999999999999999988887653 46
Q ss_pred ceEEEEEcCC-CChHHHHHHHHHhcCeEEe----CCCCcCCCCCCeEEEEee--c----CHHHHHHHHHHHHhh
Q 013521 378 APYVWVQFPG-SSSWDVFAEILEKTHILTI----PGSGFGPGGNEHIRVSAF--G----HREYISEACRRLKNF 440 (441)
Q Consensus 378 ~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~iRls~~--~----~~~~~~~~l~~l~~~ 440 (441)
++++|+.++. ..+.+.+..+++++||.+. ||..+.+...+++|+++. . ++++++++++.|+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~ 393 (425)
T 3ecd_A 320 NHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEV 393 (425)
T ss_dssp SSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHH
Confidence 7889999862 2334455555667799999 554444444678999941 1 478999999998875
No 166
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.95 E-value=9.1e-28 Score=237.52 Aligned_cols=332 Identities=11% Similarity=0.101 Sum_probs=215.3
Q ss_pred CCCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.+++++|+..|.. .+. .++.+.+++.+.+.+.. ...| +.....+|++++++++ + .+++|++|+|+++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~----~~~~-~~~~~~~l~~~la~~~----~-~~~~v~~~~~Gse 120 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGT----SFGA-PTEIENKLAKLVIERV----P-SIEIVRMVNSGTE 120 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCS----CCSS-CCHHHHHHHHHHHHHS----T-TCSEEEEESSHHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCc----CcCC-CCHHHHHHHHHHHHhC----C-CCCEEEEeCChHH
Confidence 3567999988753 333 58999999999887632 2234 5667788888888875 4 6789999999999
Q ss_pred HHHH-HHHhc--CCCCEEEEeCCCchhhHhHHHHhcccccccc---ccCc-----cceeEEeecCCCCCccCCCCC----
Q 013521 147 DISR-LQMLL--GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK---ETGK-----YRNIVYMNCRPENNFFPDLST---- 211 (441)
Q Consensus 147 al~~-l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~---~~~~-----~~~v~~v~~~~~~~~~~~~~~---- 211 (441)
++.. +..+. .+++.|++.+|+|+++...+...+..+.... .... ...++.++.++ ..++++
T Consensus 121 a~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~le~~l~~ 196 (429)
T 3k28_A 121 ATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYND----LESVKYAFEQ 196 (429)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTC----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCC----HHHHHHHHHh
Confidence 9997 44333 3678999999999876544433221111000 0000 00233333321 111111
Q ss_pred -CCCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCccc
Q 013521 212 -TSRTDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFA 288 (441)
Q Consensus 212 -~~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~ 288 (441)
.+++++ ++++| +|++|.+. +++++++|.++|++||+++|+||+|.+| ..+.........-.++ +.||||.+
T Consensus 197 ~~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~ 270 (429)
T 3k28_A 197 FGDDIAC-VIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPD----LTCLGKVI 270 (429)
T ss_dssp HGGGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCS----EEEECGGG
T ss_pred CCCCEEE-EEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCc----eehhhhhh
Confidence 123444 55566 55566554 6888999999999999999999999987 4432222222221222 45799999
Q ss_pred CCccceeEEEEeeccccccCCchhHHHHHHH---HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 013521 289 GFTGVRLGWTVVPEELRYSNGYPVIKDFNRI---VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 289 ~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 365 (441)
+ +|+|+||++++++++ +.+... ......+.+++++.++.++++... +++++.++++++++.+.|
T Consensus 271 ~-~G~~iG~~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L 337 (429)
T 3k28_A 271 G-GGLPVGAYGGKAEIM--------RQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGL 337 (429)
T ss_dssp G-TTSCCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHH
T ss_pred c-CCCCeEEEEEcHHHH--------hhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 8 799999999998774 222211 122334578999999999987433 456677777777777777
Q ss_pred HhC----CCeeeCCCCceEEEEEcCCCC--------------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCH
Q 013521 366 QSL----GLKVNGGKNAPYVWVQFPGSS--------------SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHR 427 (441)
Q Consensus 366 ~~~----g~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~ 427 (441)
++. +.....+..|.++++.+.... ..++...+++ +||.+.|+. .+.+|+++..++
T Consensus 338 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~r~~~~~t~ 410 (429)
T 3k28_A 338 RKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVE-QGVFLPPSQ------FEGLFLSTVHSD 410 (429)
T ss_dssp HHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSST------TSCBCCCTTCCH
T ss_pred HHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHH-CCeEEecCC------CCCEEEECCCCH
Confidence 653 322222245778888874211 1456666665 599999863 356899888899
Q ss_pred HHHHHHHHHHHhhC
Q 013521 428 EYISEACRRLKNFL 441 (441)
Q Consensus 428 ~~~~~~l~~l~~~l 441 (441)
+++++++++|++++
T Consensus 411 e~i~~~l~~l~~~l 424 (429)
T 3k28_A 411 ADIEATIAAAEIAM 424 (429)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
No 167
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.95 E-value=8.1e-27 Score=228.72 Aligned_cols=327 Identities=15% Similarity=0.134 Sum_probs=210.6
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHh-hccCC-CCCCCCCCCcCcHHHH----HHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAF-ALSTV-KGYKGYGAEQGNMALR----TAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~-~~~~~-~~~~~Y~~~~g~~~lr----~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.+++++.+.+ .|+.+.+++.+.+. .+... .....|.......+++ +.+++++ +.+++.|++++| ++
T Consensus 25 ~~~~~~~~~~---~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~----g~~~~~i~~~sG-t~ 96 (405)
T 2vi8_A 25 KIELIASENF---VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF----GAEHANVQPHSG-AQ 96 (405)
T ss_dssp SEECCTTCCC---CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH----TCSEEECCCSSH-HH
T ss_pred ceeeccCccc---CCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh----CCCceEEEecCc-HH
Confidence 4666654433 38899999988774 21100 0001122112334555 4666654 777666667777 88
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhHh-H--HHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C-CCcc
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYID-T--SVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T-SRTD 216 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~~-~--~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~-~~~~ 216 (441)
++.+ +..++++||.|+++.|+|+++.. . ....|. + .+++.++++++ ++..+++. . .+++
T Consensus 97 a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~-~---------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~ 165 (405)
T 2vi8_A 97 ANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGV-Q---------YNFVAYGVDPE-THVIDYDDVREKARLHRPK 165 (405)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHH-H---------SEEEEECBCTT-TCSBCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhcCCCCEEEEecccccchhcccchhhhccc-e---------eEEEecccccc-cCCcCHHHHHHHHHhcCCe
Confidence 8887 67778999999999999988753 1 123331 0 25666766432 23334322 1 2678
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc-CCCCCcccccCCCcceeEEEecCCcccC-Cccce
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT-DPSPRSIYEIPGAREVAIEISSFSKFAG-FTGVR 294 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~-~~~~~~~~~~~~~~~~~i~i~S~SK~~~-~~G~r 294 (441)
+|++ +|+|+ |...+ +++|.++|++||+++|+||+|+.... .+... ..+. ...+++.|+||+++ .+|
T Consensus 166 ~v~~-~~~~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~--~~~~---~~di~~~s~sK~~~g~~g-- 233 (405)
T 2vi8_A 166 LIVA-AAAAY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHP--NPVP---YAHFVTTTTHKTLRGPRG-- 233 (405)
T ss_dssp EEEE-CCSSC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC--CSTT---TCSEEEEESSSTTCCCSC--
T ss_pred EEEE-eCCCC-CccCC---HHHHHHHHHHcCCEEEEEccccccccccCcCC--Cccc---cCCEEEEeccccCCCCCC--
Confidence 8776 55553 45555 88999999999999999999984322 22111 1121 12388999999997 455
Q ss_pred eEEEEeeccccccCCchhHHHHHHHHhhhcCCC-cHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGA-SNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVN 373 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 373 (441)
||+++++++ .+.+.........+. +.....++.+++......++++++++++++++++.+.|+++|+++.
T Consensus 234 -G~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 304 (405)
T 2vi8_A 234 -GMILCQEQF--------AKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLV 304 (405)
T ss_dssp -EEEEECHHH--------HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred -eEEEEcHHH--------HHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEe
Confidence 999998776 344544332222223 3443333345554211246788899999999999999998888887
Q ss_pred CC-CCceEEEEEcC--CCChHHHHHHHHHhcCeEEeCCCC----cCCCCCCeEEEEeec------CHHHHHHHHHHHHhh
Q 013521 374 GG-KNAPYVWVQFP--GSSSWDVFAEILEKTHILTIPGSG----FGPGGNEHIRVSAFG------HREYISEACRRLKNF 440 (441)
Q Consensus 374 ~~-~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~----f~~~~~~~iRls~~~------~~~~~~~~l~~l~~~ 440 (441)
.+ ..++++|+.++ +.+..++.+.| .++||.+.||.. |++..++++|+++.. +++++++++++|+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 383 (405)
T 2vi8_A 305 SGGTDNHLLLVDLRPQQLTGKTAEKVL-DEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLV 383 (405)
T ss_dssp GGSCSSSEEEEECGGGTCCHHHHHHHH-HHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEEccCCCCCHHHHHHHH-HHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHH
Confidence 54 36889999997 33455666555 556999999863 333346789999853 799999999999875
No 168
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.95 E-value=1.6e-27 Score=237.15 Aligned_cols=336 Identities=13% Similarity=0.127 Sum_probs=212.0
Q ss_pred CCCeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..+. .++. .++.+.+++.+.+.+.. ......| ..++++++++.+.+.++.++++|++|+|++++
T Consensus 49 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~~~~~~~-----~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea 122 (449)
T 3a8u_X 49 GRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD-YSPGFQY-----GHPLSFQLAEKITDLTPGNLNHVFFTDSGSEC 122 (449)
T ss_dssp CCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS-CCCSSSC-----CCHHHHHHHHHHHTTSSTTEEEEEEESSHHHH
T ss_pred CCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC-Ccccccc-----CCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHH
Confidence 34678886554 2232 37899999999886532 0011123 33445555555554456788999999999999
Q ss_pred HHH-HHHhcC--------CCCEEEEeCCCchhhHh-HHHHhcccc---ccccccCccceeEEeecCC--CCC---cc---
Q 013521 148 ISR-LQMLLG--------SNVTVAVQDPSFPAYID-TSVIVGQAG---KFLKETGKYRNIVYMNCRP--ENN---FF--- 206 (441)
Q Consensus 148 l~~-l~~l~~--------~gd~Vlv~~p~y~~~~~-~~~~~g~~~---~~~~~~~~~~~v~~v~~~~--~~~---~~--- 206 (441)
+.+ +..+.. +||.|++.+|+|++... .....|... .+.+. ...+..++... ..+ ++
T Consensus 123 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~d~~~ 199 (449)
T 3a8u_X 123 ALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQP---MQDVDHLPHTLLASNAYSRGMPKE 199 (449)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCC---SCSEEEECCCCCGGGTTCSSSCSS
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCC---CCCCeEecCCccccCccccCChHH
Confidence 997 444432 67999999999998644 444433210 00000 01234444321 111 11
Q ss_pred -----C-CCCC--C----CCccEEEEcCC-CCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccC
Q 013521 207 -----P-DLST--T----SRTDIIFFCSP-NNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIP 272 (441)
Q Consensus 207 -----~-~~~~--~----~~~~~v~i~~p-~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~ 272 (441)
+ ++++ . +++++ ++++| +||||. ..|.+++++|.++|++||+++|+||+|..|...+....+....
T Consensus 200 ~~~~~~~~le~~l~~~~~~~~~~-vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~ 278 (449)
T 3a8u_X 200 GGIALADELLKLIELHDASNIAA-VFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFG 278 (449)
T ss_dssp SHHHHHHHHHHHHHHHCGGGEEE-EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCEEE-EEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcC
Confidence 1 1111 1 24444 55677 578997 5679999999999999999999999998775443222222222
Q ss_pred CCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHH---------HhhhcCCCcHHHHHHHHHhcCCC
Q 013521 273 GAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI---------VCTCFNGASNIVQAGGLACLSPD 342 (441)
Q Consensus 273 ~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~a~~~~l~~~ 342 (441)
-.++ + .||||.++ +| +|+||+++++++ .+.+... ......+.+++++.++.++++..
T Consensus 279 ~~~d--i--~s~sK~l~-~G~~~~G~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~ 345 (449)
T 3a8u_X 279 VTPD--L--MCIAKQVT-NGAIPMGAVIASTEI--------YQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLL 345 (449)
T ss_dssp CCCS--E--EEECGGGG-TTSSCCEEEEEEHHH--------HHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred CCCC--E--EEEccccc-CCCCceEEEEECHHH--------HHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHH
Confidence 1233 2 28999998 68 999999998876 3444432 11123346788888888777521
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCC-Cee--eCCCCceEEEEEcCCCC------hHHHHHHHHHhcCeEEeCCCCcCC
Q 013521 343 GFQALRTVIDYYKENAKIIVDAFQSLG-LKV--NGGKNAPYVWVQFPGSS------SWDVFAEILEKTHILTIPGSGFGP 413 (441)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~--~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gi~v~pg~~f~~ 413 (441)
. + +.+.++++++++++.+.|++++ +.. ..+..|+++|++++... ..++...++++ ||.+.|+
T Consensus 346 ~-~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~----- 416 (449)
T 3a8u_X 346 Q-K--ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKA-GFYVRFG----- 416 (449)
T ss_dssp H-H--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHH-TEECEEE-----
T ss_pred H-h--cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHC-CcEEecC-----
Confidence 1 1 2456777788888888887642 221 11236789999997421 12577777765 9999986
Q ss_pred CCCCeEEEE--eecCHHHHHHHHHHHHhh
Q 013521 414 GGNEHIRVS--AFGHREYISEACRRLKNF 440 (441)
Q Consensus 414 ~~~~~iRls--~~~~~~~~~~~l~~l~~~ 440 (441)
+ +++||+ +..+++++++++++|+++
T Consensus 417 -g-~~iRis~~~~~t~~~i~~~l~~l~~~ 443 (449)
T 3a8u_X 417 -G-DTLQFGPTFNSKPQDLDRLFDAVGEV 443 (449)
T ss_dssp -T-TEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred -C-CEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 2 689999 466999999999999875
No 169
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.95 E-value=5.8e-26 Score=221.75 Aligned_cols=315 Identities=15% Similarity=0.146 Sum_probs=212.0
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCC-CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYG-AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~ 150 (441)
.++++++.+.|++ ++.+.+++.+.+.. . .|. +..+..++|+++|+++ +.+ ++++++|+++++.+
T Consensus 22 ~~~~~l~~~~p~~--~~~~~~a~~~~~~~----~---~~~~~~~~~~~l~~~la~~~----~~~--~~i~~~~gt~al~~ 86 (391)
T 3dr4_A 22 SDLPRISVAAPRL--DGNERDYVLECMDT----T---WISSVGRFIVEFEKAFADYC----GVK--HAIACNNGTTALHL 86 (391)
T ss_dssp ------CCCCCCC--CSSHHHHHHHHHHH----T---CCSSCSHHHHHHHHHHHHHH----TCS--EEEEESSHHHHHHH
T ss_pred CCCceeccCCCCC--CHHHHHHHHHHHHc----C---CccCCChHHHHHHHHHHHHh----CCC--cEEEeCCHHHHHHH
Confidence 3578999998854 47788888887764 1 344 5779999999999997 443 78888888999987
Q ss_pred -HHHh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCC---C--CCCccEEEEcCC
Q 013521 151 -LQML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS---T--TSRTDIIFFCSP 223 (441)
Q Consensus 151 -l~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~---~--~~~~~~v~i~~p 223 (441)
+..+ +++||+|+++.|+|+++...+...| .+++.++++++ ++..+++ + .+++++|+ |
T Consensus 87 ~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~---~ 150 (391)
T 3dr4_A 87 ALVAMGIGPGDEVIVPSLTYIASANSVTYCG------------ATPVLVDNDPR-TFNLDAAKLEALITPRTKAIM---P 150 (391)
T ss_dssp HHHHHTCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TCSBCGGGSGGGCCTTEEEEC---C
T ss_pred HHHHcCCCCcCEEEECCCchHHHHHHHHHCC------------CEEEEEecCcc-ccCcCHHHHHHhcCCCceEEE---E
Confidence 6777 8999999999999999999999888 58899998753 2333322 2 25677766 5
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCC--cccCCccceeEEEEee
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS--KFAGFTGVRLGWTVVP 301 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~~~~G~r~G~l~~~ 301 (441)
+||||...+ +++|+++|++||+++|+|++|+...... ......+ .+ +.+.||| |.++ |.+.||++++
T Consensus 151 ~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~-~~~~~~~---~d--i~~~S~s~~K~l~--~g~gg~~~~~ 219 (391)
T 3dr4_A 151 VHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYR-GKKSGSL---GD--CATFSFFGNAIIT--TGEGGMITTN 219 (391)
T ss_dssp BCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEET-TEETTSS---SS--EEEEECBTTSSSC--CBSCEEEEES
T ss_pred ECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceEC-Ceeeccc---CC--EEEEECCCCCcCC--cCCeEEEEEC
Confidence 789999988 8889999999999999999998533211 1111112 23 6677766 7774 4678999988
Q ss_pred ccccccCCchhHHHHHHHHhhhc--------------CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 013521 302 EELRYSNGYPVIKDFNRIVCTCF--------------NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS 367 (441)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 367 (441)
++.+ .+.+........ ...+.+. ++..... ...+++..++.+++.+.+.+.|++
T Consensus 220 ~~~~-------~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~--aa~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~ 287 (391)
T 3dr4_A 220 DDDL-------AAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQ--AAIGLAQ---LERVDEHLAARERVVGWYEQKLAR 287 (391)
T ss_dssp CHHH-------HHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHH--HHHHHHH---HHTHHHHHHHHHHHHHHHHHHHGG
T ss_pred CHHH-------HHHHHHHHhcCCCCCCcccccccccccCCCHHH--HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7643 344443332211 1122222 2222222 133466777778888889999988
Q ss_pred CCCeeeCC---C---Cc-eEEEEEcCC---CChHHHHHHHHHhcCeEEeCCCC---cCCC---------------CCCeE
Q 013521 368 LGLKVNGG---K---NA-PYVWVQFPG---SSSWDVFAEILEKTHILTIPGSG---FGPG---------------GNEHI 419 (441)
Q Consensus 368 ~g~~~~~~---~---~~-~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~---f~~~---------------~~~~i 419 (441)
.|+.+..+ . .+ ..+++.++. .+..++.+.|.+ +||.+++|.. ..+. ....+
T Consensus 288 ~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~-~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l 366 (391)
T 3dr4_A 288 LGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDA-LGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGL 366 (391)
T ss_dssp GTTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHH-TTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEE
T ss_pred CCccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHH-CCCceeecCCccccChhhhhcCcCCChHHHHHHhCeE
Confidence 77776543 1 22 235777763 345667777665 4999998751 1110 13579
Q ss_pred EEEee--cCHHHHHHHHHHHHhhC
Q 013521 420 RVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 420 Rls~~--~~~~~~~~~l~~l~~~l 441 (441)
||++. .++++++++++.|++++
T Consensus 367 rl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 367 NLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp EECCCTTCCHHHHHHHHHHHHTTC
T ss_pred EccCCCCCCHHHHHHHHHHHHHHh
Confidence 99973 48999999999999875
No 170
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.95 E-value=9.2e-27 Score=229.39 Aligned_cols=329 Identities=17% Similarity=0.129 Sum_probs=200.2
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhh-ccCC-CCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFA-LSTV-KGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~-~~~~-~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
.+.+..+.+. .++.+.+++.+.+.+ +... .....|........+.+...+++.+.+++++++|++++| ++++.+
T Consensus 32 ~~~~~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sG-s~a~~~a 108 (420)
T 3gbx_A 32 HIELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSG-SQANFAV 108 (420)
T ss_dssp SEECCTTCCC--CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHHH
T ss_pred ceeeeccCCC--CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCc-HHHHHHH
Confidence 4566555432 588999999987743 2100 111122222233344443334444445788888888888 567776
Q ss_pred HHHhcCCCCEEEEeCCCchhhHh---HHHHhccccccccccCccceeEEeecCCCCCccCCCCC------CCCccEEEEc
Q 013521 151 LQMLLGSNVTVAVQDPSFPAYID---TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTDIIFFC 221 (441)
Q Consensus 151 l~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~~v~i~ 221 (441)
+..++++||+|+++.|+|+++.. .....|.. ...+.++.+.+ +..|++. ..++++|+++
T Consensus 109 ~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~v~~~ 176 (420)
T 3gbx_A 109 YTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKL----------YNIVPYGIDES--GKIDYDEMAKLAKEHKPKMIIGG 176 (420)
T ss_dssp HHHHCCTTCEEEEEEEC------------CHHHH----------SEEEEEEECTT--CSCCHHHHHHHHHHHCCSEEEEC
T ss_pred HHHhcCCCCEEEecchhhcceeccchhhhhcccc----------eeEEeccCCcc--CCcCHHHHHHHHHhcCCeEEEEe
Confidence 67888999999999999987431 11122210 24445555532 2333322 1368999999
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccc-cCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 222 SPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 222 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
+|+||+ ..+ +++|.++|++||+++|+||+|.... ..+..... +. ..++++.|+||.++ |.+.||+++
T Consensus 177 ~~~~~~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~---~~di~~~s~sK~~~--g~~gg~~~~ 244 (420)
T 3gbx_A 177 FSAYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP---HAHVVTTTTHKTLA--GPRGGLILA 244 (420)
T ss_dssp CTTCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT---TSSEEEEESSGGGC--SCSCEEEEE
T ss_pred cCccCC--ccC---HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc---cCCEEEeecccCCC--CCCceEEEE
Confidence 999975 556 8899999999999999999986432 22221111 11 23489999999985 566699999
Q ss_pred ec---cccccCCchhHHHHHHHHhhh-cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-
Q 013521 301 PE---ELRYSNGYPVIKDFNRIVCTC-FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG- 375 (441)
Q Consensus 301 ~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~- 375 (441)
++ .+ .+.+....... ..+++...+.++..++......++++++++++++++.+.+.|.+.|+++..+
T Consensus 245 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 316 (420)
T 3gbx_A 245 KGGDEEL--------YKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGG 316 (420)
T ss_dssp SSCCHHH--------HHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS
T ss_pred cCCcHHH--------HHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCC
Confidence 87 33 33343322221 1223344333333333222224568889999999999999999888887653
Q ss_pred CCceEEEEEcCC-CChHHHHHHHHHhcCeEEeC-------CCCcCCCCCCeEEEEee------cCHHHHHHHHHHHHhh
Q 013521 376 KNAPYVWVQFPG-SSSWDVFAEILEKTHILTIP-------GSGFGPGGNEHIRVSAF------GHREYISEACRRLKNF 440 (441)
Q Consensus 376 ~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~p-------g~~f~~~~~~~iRls~~------~~~~~~~~~l~~l~~~ 440 (441)
..++++|+.++. ..+.+.+..+++++||.+.| +..|+ +..+||++. .++++++++++.|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~---~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~ 392 (420)
T 3gbx_A 317 TENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFV---TSGIRIGSPAVTRRGFKEAEVKELAGWMCDV 392 (420)
T ss_dssp CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTT---CSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCC---CcceEEecchhcccCCCHHHHHHHHHHHHHH
Confidence 568899999862 23344555556677999998 33332 356999963 2478899999998875
No 171
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.95 E-value=4.6e-26 Score=222.11 Aligned_cols=280 Identities=14% Similarity=0.170 Sum_probs=195.6
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHH----HHhcccccccc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLK 186 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~ 186 (441)
+..+..++++++++++ +.+ +.|++++| ++++.+ +..++++||.|+++.|+|++....+ ...|
T Consensus 50 ~~~~~~~l~~~la~~~----~~~-~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g------- 116 (386)
T 1cs1_A 50 GNPTRDVVQRALAELE----GGA-GAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC------- 116 (386)
T ss_dssp CCHHHHHHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTS-------
T ss_pred CCccHHHHHHHHHHHh----CCC-cEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcC-------
Confidence 4567899999999997 544 77888777 899987 5667899999999999999865543 3334
Q ss_pred ccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC
Q 013521 187 ETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS 264 (441)
Q Consensus 187 ~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~ 264 (441)
.+++.++.++. .++++ .+++++|++++|+||||.+++ +++|.++|++||+++|+||+|..+....
T Consensus 117 -----~~~~~~~~~d~----~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~- 183 (386)
T 1cs1_A 117 -----YRVLFVDQGDE----QALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN- 183 (386)
T ss_dssp -----CEEEEECTTCH----HHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred -----CEEEEeCCCCH----HHHHHhhccCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 47777776411 11111 257899999999999999998 8899999999999999999999765431
Q ss_pred CCcccccCCCcceeEEEecCCcccCCcccee-EEEEeec-cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCC
Q 013521 265 PRSIYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPE-ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPD 342 (441)
Q Consensus 265 ~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 342 (441)
++ . .++++++.|+||.++.+|.|+ ||+++++ ++ .+.+...........+++.+.++.+.++
T Consensus 184 --~~-~----~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l--------~~~l~~~~~~~~~~~~~~~~~~~~~~l~-- 246 (386)
T 1cs1_A 184 --PL-A----LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDV--------VTELAWWANNIGVTGGAFDSYLLLRGLR-- 246 (386)
T ss_dssp --GG-G----GTCSEEEEETTTTTTCSSCCCCEEEEESSHHH--------HHHHHHHHHHHTCBCCHHHHHHHHHHHT--
T ss_pred --cc-c----cCceEEEEcCcccccCCCCceeEEEEeCcHHH--------HHHHHHHHHhcCCCCCHHHHHHHHhccc--
Confidence 22 2 245699999999998899997 9999987 55 3555544443334467777766655554
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee--C---------------CCCceEEEEEcCCCChHHHHHHHHHhcCeE
Q 013521 343 GFQALRTVIDYYKENAKIIVDAFQSL-GLKVN--G---------------GKNAPYVWVQFPGSSSWDVFAEILEKTHIL 404 (441)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~ 404 (441)
++....+...++++.+.+.|+++ .+... + ...+.++.+.+++. . +.+...++++||.
T Consensus 247 ---~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~~~gi~ 321 (386)
T 1cs1_A 247 ---TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-E-QTLRRFLGGLSLF 321 (386)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-H-HHHHHHHHTCSSS
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-H-HHHHHHHHhCCcc
Confidence 23455666777888888888775 22211 1 11366777788643 3 3445556677998
Q ss_pred EeCCCCcC-------------------------CCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 405 TIPGSGFG-------------------------PGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 405 v~pg~~f~-------------------------~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
+.+.+ |+ ...++++||++.. ++++++.+.+.|+++
T Consensus 322 ~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 322 TLAES-LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp EEBSC-CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eEccc-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 87421 11 1125899999844 456677777777654
No 172
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.95 E-value=2e-27 Score=234.85 Aligned_cols=337 Identities=12% Similarity=0.056 Sum_probs=205.1
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+++++|++.|.+ ++. .++.+.+++.+.+.+. ....| + .++++++++++.+.++ ++++|++|+|++++
T Consensus 51 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~-~----~~~~~~la~~l~~~~~-~~~~v~~~~ggsea 120 (427)
T 3fq8_A 51 GNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKG----TSFGA-P----CALENVLAEMVNDAVP-SIEMVRFVNSGTEA 120 (427)
T ss_dssp SCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC----SCCSS-C----CHHHHHHHHHHHHHST-TCSEEEEESSHHHH
T ss_pred CCEEEECCCchhhhccCCCCHHHHHHHHHHHHhC----CCcCC-C----CHHHHHHHHHHHHhCC-CCCEEEEeCCHHHH
Confidence 467899998853 332 5899999999988642 11223 2 3455556655554345 68999999999999
Q ss_pred HHHHH---HhcCCCCEEEEeCCCchhhHhHHHHhcccccc----ccccC----ccceeEEeecCCCCCccCCCCC-CCCc
Q 013521 148 ISRLQ---MLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKF----LKETG----KYRNIVYMNCRPENNFFPDLST-TSRT 215 (441)
Q Consensus 148 l~~l~---~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----~~~~~----~~~~v~~v~~~~~~~~~~~~~~-~~~~ 215 (441)
+..+. .....++.|++.+|+|++....+...+..+.. ..... ....+..++.++-+.+...+.. ..++
T Consensus 121 ~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 200 (427)
T 3fq8_A 121 CMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEI 200 (427)
T ss_dssp HHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTE
T ss_pred HHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCE
Confidence 99733 22334578999999998865443333211110 00000 0012344443210000000111 1256
Q ss_pred cEEEEcCCCCccccCCC-HHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccce
Q 013521 216 DIIFFCSPNNPTGHAAT-WQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVR 294 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~-~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r 294 (441)
++|+++.++|++|.+.+ ++.+++|.++|++||+++|+||+|.+| ..+.........-.++ +.||||.++ +|+|
T Consensus 201 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~d----i~t~sK~~~-~G~~ 274 (427)
T 3fq8_A 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPD----LTTLGKIIG-GGLP 274 (427)
T ss_dssp EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCS----EEEECGGGG-TTSS
T ss_pred EEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCC----hhhhhhhhh-CCcc
Confidence 66665555777887765 666999999999999999999999987 4432221212211223 468999998 8999
Q ss_pred eEEEEeeccccccCCchhHHHHHHH---HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH----h
Q 013521 295 LGWTVVPEELRYSNGYPVIKDFNRI---VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ----S 367 (441)
Q Consensus 295 ~G~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~ 367 (441)
+||++++++++ +.+... ......+.+++++.++.++++.... +.+.++++++.+.+.+.|. +
T Consensus 275 ~G~~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~ 343 (427)
T 3fq8_A 275 VGAYGGKREIM--------QLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQE 343 (427)
T ss_dssp CEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcHHHH--------HhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988774 222211 1122334688888888888752111 2233444444444444444 3
Q ss_pred CCCeeeCCCCceEEEEEcCCC--C------------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHH
Q 013521 368 LGLKVNGGKNAPYVWVQFPGS--S------------SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEA 433 (441)
Q Consensus 368 ~g~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~ 433 (441)
+++.......|.++|+.++.. . ..++...+++ +||.+.|+.. ..+|+++..++++++++
T Consensus 344 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~------~r~~~~~~~t~e~i~~~ 416 (427)
T 3fq8_A 344 TGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQF------EAGFTSLAHTEEDIDAT 416 (427)
T ss_dssp TTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT------SCEECCTTCCHHHHHHH
T ss_pred CCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecCCC------CCEEeeCcCCHHHHHHH
Confidence 444333334678899998631 1 2356666665 5999998752 35777777799999999
Q ss_pred HHHHHhhC
Q 013521 434 CRRLKNFL 441 (441)
Q Consensus 434 l~~l~~~l 441 (441)
+++|++++
T Consensus 417 l~~l~~~l 424 (427)
T 3fq8_A 417 LAAARTVM 424 (427)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998763
No 173
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.95 E-value=7.4e-27 Score=229.07 Aligned_cols=280 Identities=16% Similarity=0.169 Sum_probs=188.4
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHH----hcccccccccc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVI----VGQAGKFLKET 188 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~~ 188 (441)
+...+|++.+++++ + .+++++++|+++++.+ +..++++||.|+++.|+|+++...+.. .|
T Consensus 81 p~~~~l~~~la~~~----g--~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g--------- 145 (414)
T 3ndn_A 81 PTVSVFEERLRLIE----G--APAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWG--------- 145 (414)
T ss_dssp HHHHHHHHHHHHHH----T--CSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTT---------
T ss_pred hHHHHHHHHHHHHH----C--CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcC---------
Confidence 34556666666664 4 3678888999999987 677889999999999999998776644 66
Q ss_pred CccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc
Q 013521 189 GKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI 268 (441)
Q Consensus 189 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~ 268 (441)
.+++.++.++-+.+...+ .+++++|++++|+||||.+.+ +++|+++|++||+++|+|++|...... .++
T Consensus 146 ---~~~~~v~~~d~~~l~~ai--~~~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~---~~~ 214 (414)
T 3ndn_A 146 ---VQTVFVDGDDLSQWERAL--SVPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQ---QGF 214 (414)
T ss_dssp ---CEEEEECTTCHHHHHHHT--SSCCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC---CCG
T ss_pred ---cEEEEeCCCCHHHHHHhc--CCCCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccC---Cch
Confidence 588888775211111001 357899999999999999988 889999999999999999999843221 112
Q ss_pred cccCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHH
Q 013521 269 YEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQAL 347 (441)
Q Consensus 269 ~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 347 (441)
.. +.++++.|+||.+|.+| +++||++++++.+ .+.+...........++....++...+ +.+
T Consensus 215 -~~----g~div~~S~sK~l~~~G~~~~G~vv~~~~~~-------~~~l~~~~~~~g~~~~~~~a~~~~~~l-----~~l 277 (414)
T 3ndn_A 215 -PL----GVDVVVYSGTKHIDGQGRVLGGAILGDREYI-------DGPVQKLMRHTGPAMSAFNAWVLLKGL-----ETL 277 (414)
T ss_dssp -GG----TCSEEEEETTTTTTCSSCCCCEEEEECHHHH-------TTHHHHHHHHHCCCCCHHHHHHHHHHG-----GGH
T ss_pred -hc----CCCeEeccCCccccCCCCceEEEEEECHHHH-------HHHHHHHHHHcCCCCCHHHHHHHHHHH-----HHH
Confidence 12 23588999999999778 8999999988774 123443333333444555443333333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCe-eeCCC----------------CceEEEEEcCCC-----C-hHHHHHHHHHhcCe
Q 013521 348 RTVIDYYKENAKIIVDAFQSL-GLK-VNGGK----------------NAPYVWVQFPGS-----S-SWDVFAEILEKTHI 403 (441)
Q Consensus 348 ~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~-----~-~~~~~~~ll~~~gi 403 (441)
..+.++..++++.+.+.|+++ ++. +..|. .|..+|+.+++. . ...++.. ++..++
T Consensus 278 ~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~-l~~~~~ 356 (414)
T 3ndn_A 278 AIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDK-MRLIDI 356 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHH-CSSSEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHh-CccceE
Confidence 566677788889999999876 443 22111 467899999752 1 2223333 344577
Q ss_pred EEeCCCCcCC---------------------CCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 404 LTIPGSGFGP---------------------GGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 404 ~v~pg~~f~~---------------------~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
.+.+|..+.. ..+++||||++. ++.+++++.|.+
T Consensus 357 ~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl~~ 411 (414)
T 3ndn_A 357 SNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--EDTDDLIADIDR 411 (414)
T ss_dssp CSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHH
T ss_pred cCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHH
Confidence 8888876531 236899999864 333444444444
No 174
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.95 E-value=3.3e-27 Score=234.86 Aligned_cols=337 Identities=9% Similarity=0.024 Sum_probs=217.9
Q ss_pred CC--CeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcH
Q 013521 71 DA--RLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQ 145 (441)
Q Consensus 71 ~~--~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~ 145 (441)
++ +++|+..|. ..+. .+|.+.+++.+.+.+... ...++.+.....+|++.++++ ++...++|++|+|++
T Consensus 72 G~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~~L~e~la~~----~~~~~~~v~~~~sGs 145 (457)
T 3tfu_A 72 GQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNH--VMFGGLTHEPAARLAKLLVDI----TPAGLDTVFFSDSGS 145 (457)
T ss_dssp TEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSC--CCSSSEECHHHHHHHHHHHHH----SSTTEEEEEEESSHH
T ss_pred CCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccC--ccccccCCHHHHHHHHHHHHh----CCCCcCEEEEeCcHH
Confidence 56 789988762 3332 689999999999876421 111111333445555555555 466778999999999
Q ss_pred HHHHH-HHHhcC-------CC-CEEEEeCCCchhhHhHHHHhcc-ccc----cccccCccceeEEeecCCCCC--cc-CC
Q 013521 146 SDISR-LQMLLG-------SN-VTVAVQDPSFPAYIDTSVIVGQ-AGK----FLKETGKYRNIVYMNCRPENN--FF-PD 208 (441)
Q Consensus 146 ~al~~-l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g~-~~~----~~~~~~~~~~v~~v~~~~~~~--~~-~~ 208 (441)
+++.. +..+.. +| +.|++.+++|++....+...+. ... +.+.. ..+..++...... .+ .+
T Consensus 146 eA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~d~~~ 222 (457)
T 3tfu_A 146 VSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVL---AAQVFAPQVPRDYDPAYSAA 222 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------C---CCCEEECCCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCC---CCceEecCCCcccCHHHHHH
Confidence 99997 444433 55 5899999999987655554421 100 00000 1333444322110 01 11
Q ss_pred CCC--C---CCccEEEEcC-CCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEE
Q 013521 209 LST--T---SRTDIIFFCS-PNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEI 281 (441)
Q Consensus 209 ~~~--~---~~~~~v~i~~-p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i 281 (441)
+++ . +++++|++.. ++||+|.++ +++.+++|.++|++||+++|+||+|.+|...+...........++ +
T Consensus 223 le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pd--i-- 298 (457)
T 3tfu_A 223 FEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPD--I-- 298 (457)
T ss_dssp HHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS--E--
T ss_pred HHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCce--E--
Confidence 211 1 4567777666 799999876 788899999999999999999999998765543322333322233 2
Q ss_pred ecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHH-----HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013521 282 SSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI-----VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYK 355 (441)
Q Consensus 282 ~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 355 (441)
.||||.++ .| +|+||+++++++ .+.+... ......+.+++++.++.+.++.... +.+.++++
T Consensus 299 it~sK~l~-gG~~~lG~v~~~~~i--------~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~---~~~~~~~~ 366 (457)
T 3tfu_A 299 MCVGKALT-GGYLSLAATLCTADV--------AHTISAGAAGALMHGPTFMANPLACAVSVASVELLLG---QDWRTRIT 366 (457)
T ss_dssp EEECGGGG-TTSSCCEEEEEEHHH--------HHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT---SCHHHHHH
T ss_pred EEEChhhh-CCCcceEEEEEcHHH--------HHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh---hHHHHHHH
Confidence 28999987 56 799999999887 3444311 1223445788999888888762111 23455666
Q ss_pred HHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe--ecCHH
Q 013521 356 ENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA--FGHRE 428 (441)
Q Consensus 356 ~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~--~~~~~ 428 (441)
++.+++.+.|+++ ++.... ..|++++++++. .+..++...++++ ||.+.|. .+++||+. ..+++
T Consensus 367 ~~~~~l~~~L~~l~~~~~v~~vr-~~G~~~~i~l~~~~~~~~~~~~l~~~-Gv~v~~~-------~~~lRi~p~~~~t~e 437 (457)
T 3tfu_A 367 ELAAGLTAGLDTARALPAVTDVR-VCGAIGVIECDRPVDLAVATPAALDR-GVWLRPF-------RNLVYAMPPYICTPA 437 (457)
T ss_dssp HHHHHHHHHHGGGGGSTTEEEEE-ECSSCEEEEESSCCCHHHHHHHHHHT-TEECCCB-------TTEEEECCCTTCCHH
T ss_pred HHHHHHHHHHHHHhcCCCeeeee-cCCeEEEEEECCcccHHHHHHHHHHC-CeEEEec-------CCEEEEECCCCCCHH
Confidence 6777777777654 333333 367889999873 3456777777765 9999873 25899984 55899
Q ss_pred HHHHHHHHHHhhC
Q 013521 429 YISEACRRLKNFL 441 (441)
Q Consensus 429 ~~~~~l~~l~~~l 441 (441)
++++++++|++++
T Consensus 438 ei~~~l~~L~~~l 450 (457)
T 3tfu_A 438 EITQITSAMVEVA 450 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 175
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.95 E-value=2.6e-26 Score=219.00 Aligned_cols=277 Identities=16% Similarity=0.130 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH----HhccccccccccCccc
Q 013521 118 ALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQAGKFLKETGKYR 192 (441)
Q Consensus 118 ~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~ 192 (441)
++++++|+++ +.+ +.|++++| ++++.+ +..++++||+|+++.|+|+++...+. ..| .
T Consensus 2 ~l~~~la~~~----g~~-~~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g------------~ 63 (331)
T 1pff_A 2 ALEGKIAKLE----HAE-ACAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG------------V 63 (331)
T ss_dssp HHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT------------C
T ss_pred hHHHHHHHHh----CCC-eEEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcC------------C
Confidence 5899999997 655 67777777 789987 56678999999999999999876653 345 4
Q ss_pred eeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH-cCcEEEEcccccccccCCCCCccccc
Q 013521 193 NIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKA-NGSIIVYDSAYAAYITDPSPRSIYEI 271 (441)
Q Consensus 193 ~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~-~~~~ii~De~~~~~~~~~~~~~~~~~ 271 (441)
+++.++..+-+.+...+ .+++++|++++|+||||.+++ +++|.++|++ ||+++|+|++|..+... .++ .
T Consensus 64 ~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~---~~~-~- 133 (331)
T 1pff_A 64 EVDFIDMAVPGNIEKHL--KPNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT---NPL-D- 133 (331)
T ss_dssp EEEEECTTSTTHHHHTC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC---CGG-G-
T ss_pred EEEEeCCCCHHHHHHhh--cCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC---Chh-h-
Confidence 77777763211111111 257899999999999999998 8999999999 99999999999865442 122 2
Q ss_pred CCCcceeEEEecCCcccCCccce-eEEEEeec-cccccCCchhHHHHHHHHhh-hcCCCcHHHHHHHHHhcCCCcHHHHH
Q 013521 272 PGAREVAIEISSFSKFAGFTGVR-LGWTVVPE-ELRYSNGYPVIKDFNRIVCT-CFNGASNIVQAGGLACLSPDGFQALR 348 (441)
Q Consensus 272 ~~~~~~~i~i~S~SK~~~~~G~r-~G~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~ 348 (441)
.++++++.|+||.++.+|.| +||+++++ ++ .+.+...... ...+.+++.+.++.+.++ .+.
T Consensus 134 ---~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~ 197 (331)
T 1pff_A 134 ---LGVDIVVHSATKYINGHTDVVAGLVCSRADII--------AKVKSQGIKDITGAIISPHDAWLITRGTL-----TLD 197 (331)
T ss_dssp ---GTCSEEEEETTTTTSSSSSCCCEEEEECHHHH--------HHHHHTCCCCCCCCCCCHHHHHHHHHHHH-----HHH
T ss_pred ---cCCcEEEEECccccCCCCCceEEEEEeCcHHH--------HHHHHHHHHhhcCCCCCHHHHHHHHcCcc-----hHH
Confidence 24569999999999989999 89999987 65 3455443333 233466777665554443 223
Q ss_pred HHHHHHHHHHHHHHHHHHhC---------------CCeeeC---CCCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCCC
Q 013521 349 TVIDYYKENAKIIVDAFQSL---------------GLKVNG---GKNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGSG 410 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~---------------g~~~~~---~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~ 410 (441)
...+...++.+.+.+.|++. ++++.. ...+.++++.++ +. +.+..++++.||.+++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~l~~~gI~~~~~s~ 274 (331)
T 1pff_A 198 MRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--GL-EKAKKVLDNCHVVSLAVSL 274 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--SH-HHHHHHHHTCSSSEECSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--CH-HHHHHHHHhCCCceeccCC
Confidence 34444555666666655543 111111 114667888886 33 3455566677998766531
Q ss_pred ---------cC---------------CCCCCeEEEEeec--CHHHHHHHHHHHHhhC
Q 013521 411 ---------FG---------------PGGNEHIRVSAFG--HREYISEACRRLKNFL 441 (441)
Q Consensus 411 ---------f~---------------~~~~~~iRls~~~--~~~~~~~~l~~l~~~l 441 (441)
+. ...++++|+++.. ++++++.+++.|++++
T Consensus 275 g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~~ 331 (331)
T 1pff_A 275 GGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLVL 331 (331)
T ss_dssp CSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC-
T ss_pred CCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHhC
Confidence 10 1125899999743 6789999999998764
No 176
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.95 E-value=2.2e-27 Score=234.45 Aligned_cols=332 Identities=14% Similarity=0.088 Sum_probs=207.8
Q ss_pred CCCeEEeCCCC--CCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGD--TTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+..++||..|. .++. .++.+.+++.+.+... ....| ..++++++++++.+.++ .+++|++|+|++++
T Consensus 51 g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~-----~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ea 120 (424)
T 2e7u_A 51 GNRYLDYVMSWGPLILGHAHPKVLARVRETLERG----LTFGA-----PSPLEVALAKKVKRAYP-FVDLVRFVNSGTEA 120 (424)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC----SCCSS-----CCHHHHHHHHHHHHHCT-TCCEEEEESSHHHH
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhC----CCCCC-----CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHH
Confidence 45689998775 2232 6899999999988751 11223 23344455555444344 67899999999999
Q ss_pred HHH-HHH--hcCCCCEEEEeCCCchhhHhHHHH-hccc-ccc--cc-ccCc---cceeEEeecCCCCCccCCCCC--C--
Q 013521 148 ISR-LQM--LLGSNVTVAVQDPSFPAYIDTSVI-VGQA-GKF--LK-ETGK---YRNIVYMNCRPENNFFPDLST--T-- 212 (441)
Q Consensus 148 l~~-l~~--l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~-~~~--~~-~~~~---~~~v~~v~~~~~~~~~~~~~~--~-- 212 (441)
+.. +.. .+.+++.|++.+|+|+++...+.. .|.. ..+ .. .+.. ..++..++.. + ..++++ .
T Consensus 121 ~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~---d-~~~le~~l~~~ 196 (424)
T 2e7u_A 121 TMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN---D-PEGLREVLKRR 196 (424)
T ss_dssp HHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTT---C-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCC---C-HHHHHHHHHhC
Confidence 987 432 244457899999999986543321 1110 000 00 0000 0134444432 1 111221 1
Q ss_pred -CCccEEEEcCCCCc-cccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC
Q 013521 213 -SRTDIIFFCSPNNP-TGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 -~~~~~v~i~~p~NP-tG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
+++ ++++++|+|| ||.++ +++++++|.++ ++||+++|+||+|.+| ..+.........-.++ +.||||.++
T Consensus 197 ~~~~-~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~ 269 (424)
T 2e7u_A 197 GEEI-AAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPD----LVTLGKILG 269 (424)
T ss_dssp GGGE-EEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCS----EEEECGGGG
T ss_pred CCCE-EEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcc----hhhhhhhhh
Confidence 234 4566688655 89765 79999999999 9999999999999987 3332211112221233 339999998
Q ss_pred CccceeEEEEeeccccccCCchhHHHHHHH---HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRI---VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
+|+|+||++++++++ +.+... ......+.+++++.++.++++.. +..+++.++++++++++.+.|+
T Consensus 270 -~G~~~G~~~~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~~~~~~~~~~~~~~~l~~~L~ 338 (424)
T 2e7u_A 270 -GGLPAAAYAGRREIM--------EKVAPLGPVYQAGTLSGNPLAMAAGLATLELL--EENPGYYAYLEDLGARLEAGLK 338 (424)
T ss_dssp -TTSSCEEEEECHHHH--------TTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHH
T ss_pred -CCcceEEEEEcHHHH--------hhhcccCCcccCCCCCCCHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHH
Confidence 799999999998774 222210 11223357788888888887521 1114466777777777777776
Q ss_pred hC----CCeeeCCCCceEEEEEcCCC--------------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHH
Q 013521 367 SL----GLKVNGGKNAPYVWVQFPGS--------------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHRE 428 (441)
Q Consensus 367 ~~----g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~ 428 (441)
+. ++....+..|+++|++++.. ...++...++ ++||.+.|+.. ..+|+++..+++
T Consensus 339 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~------~~~~~~~~~t~~ 411 (424)
T 2e7u_A 339 EVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPSNF------EAAFLSVAHREE 411 (424)
T ss_dssp HHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSSSS------SCEECCTTCCHH
T ss_pred HHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEeccCC------CceEeeccCCHH
Confidence 53 55322223677999999641 1235666666 56999999742 357888777999
Q ss_pred HHHHHHHHHHhhC
Q 013521 429 YISEACRRLKNFL 441 (441)
Q Consensus 429 ~~~~~l~~l~~~l 441 (441)
++++++++|++++
T Consensus 412 ~i~~~l~~l~~~l 424 (424)
T 2e7u_A 412 DVEKTLEALRKAL 424 (424)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999875
No 177
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.95 E-value=3.2e-25 Score=214.97 Aligned_cols=302 Identities=14% Similarity=0.093 Sum_probs=209.1
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh---cCCCCE
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML---LGSNVT 160 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l---~~~gd~ 160 (441)
++|+.+.+++.+.+.. . .|.+.....++++++|+++ +.+ ++++|+|+++++.+ +..+ +++||+
T Consensus 10 ~~~~~v~~a~~~~~~~-----~--~~~~~~~~~~l~~~la~~~----~~~--~v~~~~ggt~al~~~~~~~~~~~~~gd~ 76 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNS-----K--QLTQGKRSLLFEEALCEFL----GVK--HALVFNSATSALLTLYRNFSEFSADRNE 76 (375)
T ss_dssp CCCHHHHHHHHHHHTS-----S--CCSSSHHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHHHHHSSCCCTTSCE
T ss_pred CCCHHHHHHHHHHHHc-----C--cccCChHHHHHHHHHHHHh----CCC--eEEEeCCHHHHHHHHHHHhcccCCCCCE
Confidence 4678899999998753 1 1334567899999999997 544 99999999999997 6677 789999
Q ss_pred EEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCccccCCCHHHHH
Q 013521 161 VAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPTGHAATWQQLK 237 (441)
Q Consensus 161 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~ 237 (441)
|+++.|+|+++...+...| .+++.+++++++.++++ +++ .+++++|++++| ||.+.+ ++
T Consensus 77 Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~---l~ 138 (375)
T 2fnu_A 77 IITTPISFVATANMLLESG------------YTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVE---VE 138 (375)
T ss_dssp EEECSSSCTHHHHHHHHTT------------CEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCC---HH
T ss_pred EEECCCccHhHHHHHHHCC------------CEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccC---HH
Confidence 9999999999999888888 58889998765433222 222 357888888776 999998 78
Q ss_pred HHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCC--cccCCccceeEEEEee--ccccccCCchhH
Q 013521 238 KLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS--KFAGFTGVRLGWTVVP--EELRYSNGYPVI 313 (441)
Q Consensus 238 ~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~~~~G~r~G~l~~~--~~~~~~~~~~~~ 313 (441)
+|.++|++||+++|+|++|+.+.... ... +...+ .+.+.||| |.++ +| +|++++. +++ .
T Consensus 139 ~i~~l~~~~~~~li~D~a~~~~~~~~-~~~---~~~~~--~i~~~s~s~~K~~~-~g--~g~~~~~~~~~~--------~ 201 (375)
T 2fnu_A 139 SVQKLCKKHSLSFLSDSSHALGSEYQ-NKK---VGGFA--LASVFSFHAIKPIT-TA--EGGAVVTNDSEL--------H 201 (375)
T ss_dssp HHHHHHHHHTCEEEEECTTCTTCEET-TEE---TTSSS--SEEEEECCTTSSSC-CS--SCEEEEESCHHH--------H
T ss_pred HHHHHHHHcCCEEEEECccccCCeEC-Cee---ccccC--CeEEEeCCCCCCcc-cc--CceEEEeCCHHH--------H
Confidence 99999999999999999998543221 111 21112 37788888 9997 46 7888874 334 3
Q ss_pred HHHHHHHhhhc----------------CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCC
Q 013521 314 KDFNRIVCTCF----------------NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGK 376 (441)
Q Consensus 314 ~~~~~~~~~~~----------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 376 (441)
+.+........ ...+.+...++... .+++++..++.+++++++.+.|+++ |+.+..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 276 (375)
T 2fnu_A 202 EKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQ-----LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPL 276 (375)
T ss_dssp HHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGG
T ss_pred HHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCC
Confidence 44443322111 12333333222222 2234677888899999999999987 77776541
Q ss_pred -----CceEEEEEcCC--C-ChHHHHHHHHHhcCeEEeCCCC-------cC-------C-----CCCCeEEEEee--cCH
Q 013521 377 -----NAPYVWVQFPG--S-SSWDVFAEILEKTHILTIPGSG-------FG-------P-----GGNEHIRVSAF--GHR 427 (441)
Q Consensus 377 -----~~~~~~~~~~~--~-~~~~~~~~ll~~~gi~v~pg~~-------f~-------~-----~~~~~iRls~~--~~~ 427 (441)
.++++|+.++. . +..++.+.|. ++||.+..+.. |+ . ...++|||++. .++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~ 355 (375)
T 2fnu_A 277 LKDKSSNHLYPILMHQKFFTCKKLILESLH-KRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNL 355 (375)
T ss_dssp CSSCCCCSCEEEEECGGGGGGHHHHHHHHH-HTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCH
T ss_pred CCCCcceEEEEEEeCccccchHHHHHHHHH-HCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCH
Confidence 23446788763 2 4556666665 55999983211 11 0 01268999985 389
Q ss_pred HHHHHHHHHHHhh
Q 013521 428 EYISEACRRLKNF 440 (441)
Q Consensus 428 ~~~~~~l~~l~~~ 440 (441)
+++++++++|+++
T Consensus 356 ~~i~~~~~~l~~~ 368 (375)
T 2fnu_A 356 ESVQNIAHSVLKT 368 (375)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 178
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.95 E-value=1.3e-26 Score=231.80 Aligned_cols=340 Identities=14% Similarity=0.088 Sum_probs=223.7
Q ss_pred CCCeEEeCCC--CCCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG--DTTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g--~~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..| ...+. .+|.+.+++.+.+.+.. .+....+..+.++++++++.+..+.+.++|++++|+++|
T Consensus 53 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~------~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 126 (476)
T 3i5t_A 53 GRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLP------YASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTA 126 (476)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC------CCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc------CcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHH
Confidence 5678998877 33333 68999999999987632 111114566788889998887666677899999999999
Q ss_pred HHH-HHHhc--------CCCCEEEEeCCCchhhHhHHHHhccccccccc-cCccceeEEeecCC--CC-Cc---------
Q 013521 148 ISR-LQMLL--------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKE-TGKYRNIVYMNCRP--EN-NF--------- 205 (441)
Q Consensus 148 l~~-l~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~v~~v~~~~--~~-~~--------- 205 (441)
+.. +..+. ..++.|++.+|+|+++...+...+....+... ......+..++... .. +.
T Consensus 127 ~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 206 (476)
T 3i5t_A 127 VDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDL 206 (476)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHH
Confidence 987 44333 33579999999999987666655432211000 00001233333211 10 00
Q ss_pred cCCCCC-----C-CCccEEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccc-ccCCCcce
Q 013521 206 FPDLST-----T-SRTDIIFFCSPNNPTGH-AATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIY-EIPGAREV 277 (441)
Q Consensus 206 ~~~~~~-----~-~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~-~~~~~~~~ 277 (441)
..++++ . +++++|+++.++|++|. +.+++.+++|.++|++||+++|+||+|..|...+...... .+.-.+|
T Consensus 207 ~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pd- 285 (476)
T 3i5t_A 207 VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPD- 285 (476)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCS-
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcc-
Confidence 011221 1 34566666566888885 7899999999999999999999999999876655332333 2222234
Q ss_pred eEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHH-------HhhhcCCCcHHHHHHHHHhcCCCcHHHHHH
Q 013521 278 AIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRI-------VCTCFNGASNIVQAGGLACLSPDGFQALRT 349 (441)
Q Consensus 278 ~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 349 (441)
+.+|||.++ .| +|+|+++++++++ +.+... ......+.+++++.|+.++|+... + +.
T Consensus 286 ---i~t~sK~l~-~G~~plg~v~~~~~i~--------~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~-~--~~ 350 (476)
T 3i5t_A 286 ---IITFAKGVT-SGYVPLGGLAISEAVL--------ARISGENAKGSWFTNGYTYSNQPVACAAALANIELME-R--EG 350 (476)
T ss_dssp ---EEEECGGGG-TTSSCCEEEEECHHHH--------HTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHH-H--TT
T ss_pred ---hhhhhhhhc-CCCcCeEEEEECHHHH--------HHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHH-h--HH
Confidence 236899998 79 9999999988773 333321 122344578899999998886211 1 34
Q ss_pred HHHHHHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCCCC------------hHHHHHHHHHhcCeEEeCCCCcCC
Q 013521 350 VIDYYKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPGSS------------SWDVFAEILEKTHILTIPGSGFGP 413 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ll~~~gi~v~pg~~f~~ 413 (441)
+.+.++++.+++.+.|+++ .+.... ..|.++++++.... ...+...++++ ||.+.|.
T Consensus 351 ~~~~~~~~~~~l~~~L~~l~~~~~v~~v~-~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~----- 423 (476)
T 3i5t_A 351 IVDQAREMADYFAAALASLRDLPGVAETR-SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFEL-GLIVRPL----- 423 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTEEEEE-EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHT-TEECEEE-----
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEE-ecCceeEEEEecCccccccccchhHHHHHHHHHHHHC-CCEEEec-----
Confidence 5666777777777777754 233333 35778888886321 34556666655 9999883
Q ss_pred CCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 414 GGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 414 ~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+ +++||+ +..+++++++++++|++++
T Consensus 424 -g-~~iRi~p~l~~t~e~i~~~l~~l~~~l 451 (476)
T 3i5t_A 424 -G-DLCVISPPLIISRAQIDEMVAIMRQAI 451 (476)
T ss_dssp -T-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred -C-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 2 689999 6679999999999998763
No 179
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.94 E-value=5.2e-26 Score=222.60 Aligned_cols=287 Identities=16% Similarity=0.160 Sum_probs=195.7
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHh-ccccccccccC
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIV-GQAGKFLKETG 189 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~ 189 (441)
+.....++++.+++++ +.+ +.|++++| ++++.+ +..++++||+|+++.|+|+++...+... ...|
T Consensus 63 ~~~~~~~l~~~la~~~----g~~-~~i~~~sG-~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g------- 129 (398)
T 1gc0_A 63 SNPTLNLLEARMASLE----GGE-AGLALASG-MGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFG------- 129 (398)
T ss_dssp CCHHHHHHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGT-------
T ss_pred CChHHHHHHHHHHHHh----CCC-cEEEECCH-HHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcC-------
Confidence 4567788999999886 544 45555555 689887 6777899999999999999987766322 1111
Q ss_pred ccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCccc
Q 013521 190 KYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIY 269 (441)
Q Consensus 190 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~ 269 (441)
.+++.++.++.+.+...+ .+++++|++++|+||||.+++ +++|+++|++||+++|+|++|..+.... ++
T Consensus 130 --~~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~---~~- 198 (398)
T 1gc0_A 130 --VKLRHVDMADLQALEAAM--TPATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR---PL- 198 (398)
T ss_dssp --CEEEEECTTCHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC---GG-
T ss_pred --CEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC---ch-
Confidence 477777763211111111 257899999999999999998 8999999999999999999998655421 22
Q ss_pred ccCCCcceeEEEecCCcccCCcccee-EEEEeeccccccCCchhHHHHHHHHhh-hcCCCcHHHHHHHHHhcCCCcHHHH
Q 013521 270 EIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPEELRYSNGYPVIKDFNRIVCT-CFNGASNIVQAGGLACLSPDGFQAL 347 (441)
Q Consensus 270 ~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~ 347 (441)
.. +.++++.|+||.++.+|.|+ ||++++++.+ .+.+...... ...+.+++.+.++.+.++. +
T Consensus 199 ~~----~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~ 262 (398)
T 1gc0_A 199 EL----GADLVVHSATKYLSGHGDITAGIVVGSQALV-------DRIRLQGLKDMTGAVLSPHDAALLMRGIKT-----L 262 (398)
T ss_dssp GG----TCSEEEEETTTTTTCSSSCCCEEEEECHHHH-------HHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-----H
T ss_pred hh----CceEEEECCccccCCCCCCeEEEEEEChHHH-------HHHHHHHhhccCCCCCCHHHHHHHHhccch-----H
Confidence 12 34599999999999899998 9999987764 2234433333 3344677777766666652 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCe--------------eeCC---CCceEEEEEcCCCChHHHHHHHHHhcCeEEeC--
Q 013521 348 RTVIDYYKENAKIIVDAFQSL-GLK--------------VNGG---KNAPYVWVQFPGSSSWDVFAEILEKTHILTIP-- 407 (441)
Q Consensus 348 ~~~~~~~~~~~~~l~~~L~~~-g~~--------------~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-- 407 (441)
..+.+...++.+.+.+.|+++ ++. +..+ ..+.++.+++++ ..+....++++.|+.+..
T Consensus 263 ~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~l~~~~i~~~~~s 340 (398)
T 1gc0_A 263 NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG--GIGAGRRFMNALQLFSRAVS 340 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT--HHHHHHHHHHHCSSSEECSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC--CHHHHHHHHHhCCCceeccC
Confidence 455666677777888888764 221 1111 246677778863 234566667777887765
Q ss_pred -CCCcC---------------------CCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 408 -GSGFG---------------------PGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 408 -g~~f~---------------------~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
|+.+. ...+++||||+.. ++++++.+.+.|+++
T Consensus 341 ~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 341 LGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp CSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 42210 0125899999844 578899999988875
No 180
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.94 E-value=3.8e-26 Score=226.93 Aligned_cols=331 Identities=16% Similarity=0.143 Sum_probs=210.2
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCC---CcCcHHHH--HHHH-HHHhhhCCCCCCcEEEcCCcHH
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGA---EQGNMALR--TAIA-DKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~---~~g~~~lr--~~ia-~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
+.|+|..+++. .++.+.+++.+.+.+.. ..+|+. ..|...++ ++++ +++.+.++.+...++ ++|+++
T Consensus 46 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~----~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~-~~sGs~ 118 (447)
T 3h7f_A 46 DTLEMIASENF--VPRAVLQAQGSVLTNKY----AEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQ-PHSGAQ 118 (447)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGGCC----CCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECC-CSSHHH
T ss_pred CceeEecCCCC--CCHHHHHHHHHHhcCCc----cccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEE-eCCHHH
Confidence 46888665543 48899999988775211 011211 12444444 5555 555554576653333 556667
Q ss_pred HHHH-HHHhcCCCCEEEEeCCCchhhH-hH--HHHhccccccccccCccceeEEeecCCCCCccCCCCC------CCCcc
Q 013521 147 DISR-LQMLLGSNVTVAVQDPSFPAYI-DT--SVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRTD 216 (441)
Q Consensus 147 al~~-l~~l~~~gd~Vlv~~p~y~~~~-~~--~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~~ 216 (441)
++.. +..++++||+|++++|+|+++. .. ....|.. ..++.++++++ ++..|++. ..+++
T Consensus 119 a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~ 187 (447)
T 3h7f_A 119 ANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKL----------YENGFYGVDPA-THLIDMDAVRATALEFRPK 187 (447)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHS----------SEEEEECCCTT-TCSCCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCe----------eEEEEcCcCcc-cCCcCHHHHHHHHHhcCCe
Confidence 8776 6778899999999999998732 11 1122210 35566666543 23344332 24688
Q ss_pred EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 217 IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 217 ~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
++++++|+||++. ++++|.++|++||+++|+||+|.. +.+.+...+.. + ...+++.|+||++ +|+|.
T Consensus 188 ~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~--~---~~di~~~s~sK~l--~G~~g 255 (447)
T 3h7f_A 188 VIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV--P---HADVVSTTVHKTL--GGGRS 255 (447)
T ss_dssp EEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--T---TCSEEEEESSGGG--CCCSC
T ss_pred EEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC--C---CCcEEEecCCcCC--CCCCe
Confidence 9998899999986 489999999999999999999753 33333222211 1 1238899999997 48899
Q ss_pred EEEEeeccccccCCchhHHHHHHHHhhhc-CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-----C
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIVCTCF-NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-----G 369 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g 369 (441)
||+++++++ .+.+........ .+++...+.++.+++......+++.+++++.++++.+.+.|.+. |
T Consensus 256 G~i~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g 327 (447)
T 3h7f_A 256 GLIVGKQQY--------AKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAG 327 (447)
T ss_dssp EEEEECGGG--------HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTT
T ss_pred EEEEECHHH--------HHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 999998876 345544333222 22333333433444432222356788899999999999999887 8
Q ss_pred CeeeC-CCCceEEEEEcCC-CChHHHHHHHHHhcCeEEe----CCCCcCCCCCCeEEEEee------cCHHHHHHHHHHH
Q 013521 370 LKVNG-GKNAPYVWVQFPG-SSSWDVFAEILEKTHILTI----PGSGFGPGGNEHIRVSAF------GHREYISEACRRL 437 (441)
Q Consensus 370 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~iRls~~------~~~~~~~~~l~~l 437 (441)
+++.. +.+++++|+++.+ ..+.+.+..+++++||.+. |+..+.+..++++||+.. .++++++++++.|
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l 407 (447)
T 3h7f_A 328 VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADII 407 (447)
T ss_dssp CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHH
T ss_pred eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHH
Confidence 88754 3467889999863 2345666777777899999 664444555678999852 3689999999999
Q ss_pred HhhC
Q 013521 438 KNFL 441 (441)
Q Consensus 438 ~~~l 441 (441)
.+++
T Consensus 408 ~~~l 411 (447)
T 3h7f_A 408 ATAL 411 (447)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 181
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.94 E-value=3.2e-25 Score=218.50 Aligned_cols=312 Identities=17% Similarity=0.140 Sum_probs=205.6
Q ss_pred CCCCCCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCc----HHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HH
Q 013521 79 IGDTTQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGN----MALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQ 152 (441)
Q Consensus 79 ~g~~~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~----~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~ 152 (441)
.|.|+.+ .++.+.+++.+.+.. .....|++..|. .++++.+++++ +++ ++++++|+++++.+ +.
T Consensus 6 ~g~p~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~g~~~l~~~l~~~la~~~----g~~--~~i~~~~gt~al~~~~~ 75 (418)
T 2c81_A 6 DHWPEWPQHSDRTRRKIEEVFQS----NRWAISGYWTGEESMERKFAKAFADFN----GVP--YCVPTTSGSTALMLALE 75 (418)
T ss_dssp --CCCSSCCCHHHHHHHHHHHHH----TCCSTTSBCCSSCCHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc----CCccccCcccCCHHHHHHHHHHHHHHh----CCC--cEEEeCCHHHHHHHHHH
Confidence 3455544 478999999998875 222347666674 55555555554 654 45666667899987 66
Q ss_pred Hh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC---CC--CCCccEEEEcCCCCc
Q 013521 153 ML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL---ST--TSRTDIIFFCSPNNP 226 (441)
Q Consensus 153 ~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~---~~--~~~~~~v~i~~p~NP 226 (441)
.+ +++||+|+++.|+|+++...+...| .+++.++++++ ++..|+ ++ .+++++|+++ ||
T Consensus 76 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~~---~~ 139 (418)
T 2c81_A 76 ALGIGEGDEVIVPSLTWIATATAVLNVN------------ALPVFVDVEAD-TYCIDPQLIKSAITDKTKAIIPV---HL 139 (418)
T ss_dssp HTTCCTTCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TCSBCHHHHGGGCCTTEEEECCB---CC
T ss_pred HcCCCCcCEEEECCCccHhHHHHHHHcC------------CEEEEEecCCC-CCCcCHHHHHHhhCCCCeEEEEe---CC
Confidence 67 7899999999999999999998888 58889988752 233332 22 2578887764 58
Q ss_pred cccCCCHHHHHHHHHHHHHcCcEEEEcccccccc-cCCCCCcccccCCCcceeEEEecC--CcccCCccceeEEEEeec-
Q 013521 227 TGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEISSF--SKFAGFTGVRLGWTVVPE- 302 (441)
Q Consensus 227 tG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~--SK~~~~~G~r~G~l~~~~- 302 (441)
||...+ +++|+++|++||++||+|++|+.+. +++. ++..+ .+ +.+.|| ||.++. | |+||+++++
T Consensus 140 ~G~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~---~~--~~~~s~s~~K~~~~-g-~~g~~~~~~~ 207 (418)
T 2c81_A 140 FGSMAN---MDEINEIAQEHNLFVIEDCAQSHGSVWNNQ--RAGTI---GD--IGAFSCQQGKVLTA-G-EGGIIVTKNP 207 (418)
T ss_dssp TTCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTSS---SS--EEEEECCTTSSSCS-S-SCEEEEESCH
T ss_pred cCCccc---HHHHHHHHHHCCCEEEEECcccccCccCCE--ecccc---cc--eEEEeccCCcccCC-C-CeEEEEECCH
Confidence 998866 8899999999999999999999875 4321 22222 22 677777 999984 8 999999964
Q ss_pred cccccCCchhHHHHHHHHhhhc------------CC--C-----------cHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 013521 303 ELRYSNGYPVIKDFNRIVCTCF------------NG--A-----------SNIVQAGGLACLSPDGFQALRTVIDYYKEN 357 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~------------~~--~-----------~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 357 (441)
++ .+.+........ .. . ....+.+ .... ..+++++..++.+++
T Consensus 208 ~l--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa-~~~~---~l~~~~~~~~~~~~~ 275 (418)
T 2c81_A 208 RL--------FELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSA-ILLD---QLQELDDKNAIREKN 275 (418)
T ss_dssp HH--------HHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHH-HHHH---HHTTHHHHHHHHHHH
T ss_pred HH--------HHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHH-HHHH---HHHHHHHHHHHHHHH
Confidence 44 344443332211 00 0 0111221 1111 112246667777778
Q ss_pred HHHHHHHHHhC-CCeeeC-CCC-ceE---EE-EEcC-----CCChHHHHHHHHHhcCeE---EeCCCCcC---C------
Q 013521 358 AKIIVDAFQSL-GLKVNG-GKN-APY---VW-VQFP-----GSSSWDVFAEILEKTHIL---TIPGSGFG---P------ 413 (441)
Q Consensus 358 ~~~l~~~L~~~-g~~~~~-~~~-~~~---~~-~~~~-----~~~~~~~~~~ll~~~gi~---v~pg~~f~---~------ 413 (441)
++++.+.|+++ |+++.. +.+ +.. ++ +.++ +.+..++.+.|.+++||. +.++.... +
T Consensus 276 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~ 355 (418)
T 2c81_A 276 AMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWT 355 (418)
T ss_dssp HHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGG
T ss_pred HHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccc
Confidence 88999999887 788763 333 222 22 6776 345667777766555999 88875210 0
Q ss_pred -----------------CC--------CCeEEEEe--ec-CHHHHHHHHHHHHhh
Q 013521 414 -----------------GG--------NEHIRVSA--FG-HREYISEACRRLKNF 440 (441)
Q Consensus 414 -----------------~~--------~~~iRls~--~~-~~~~~~~~l~~l~~~ 440 (441)
.. .+.|||++ .. ++++++.+++.|+++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~ 410 (418)
T 2c81_A 356 KNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAEL 410 (418)
T ss_dssp CTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHH
Confidence 00 15899997 45 899999999999875
No 182
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.94 E-value=2.5e-27 Score=234.72 Aligned_cols=331 Identities=15% Similarity=0.127 Sum_probs=207.1
Q ss_pred CCCeEEeCCCCC--CCC-CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQP-IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~~-~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++||+.|.+ .+. .++.+.+++.+.+... ....| +.....++++.+++++ + .+++|++|+|++++
T Consensus 55 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~----~~~~~-~~~~~~~l~~~la~~~----~-~~~~v~~~~sgseA 124 (434)
T 2epj_A 55 GARIVDLVLAYGPLILGHKHPRVLEAVEEALARG----WLYGA-PGEAEVLLAEKILGYV----K-RGGMIRFVNSGTEA 124 (434)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC----SCCSS-CCHHHHHHHHHHHHHH----C-TTCEEEEESSHHHH
T ss_pred CCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC----CCCCC-CCHHHHHHHHHHHHhC----C-CCCEEEEeCCHHHH
Confidence 457899988753 222 6889999999988751 11234 2333455555555553 4 57899999999999
Q ss_pred HHH-HHH--hcCCCCEEEEeCCCchhhHhHHHH-hcccc-c--ccc-ccCc---cceeEEeecCCCCCccCCCCC--C--
Q 013521 148 ISR-LQM--LLGSNVTVAVQDPSFPAYIDTSVI-VGQAG-K--FLK-ETGK---YRNIVYMNCRPENNFFPDLST--T-- 212 (441)
Q Consensus 148 l~~-l~~--l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~-~--~~~-~~~~---~~~v~~v~~~~~~~~~~~~~~--~-- 212 (441)
+.+ +.. .+.+++.|++.+|+|+++...+.. .+... . ... .+.. ..++..++.+ + ..++++ .
T Consensus 125 ~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~---d-~~~le~~l~~~ 200 (434)
T 2epj_A 125 TMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN---D-VEALERVFAEY 200 (434)
T ss_dssp HHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT---C-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC---C-HHHHHHHHHhC
Confidence 987 433 144567888889999886443221 11000 0 000 0000 0134455532 1 111221 1
Q ss_pred -CCccEEEEcCC-CCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccC
Q 013521 213 -SRTDIIFFCSP-NNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAG 289 (441)
Q Consensus 213 -~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~ 289 (441)
+++++ ++++| +||||.++ +++.+++|.++|++||+++|+||+|.+| ..+.........-.++ +.||||.++
T Consensus 201 ~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~d----i~s~sK~l~ 274 (434)
T 2epj_A 201 GDRIAG-VIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGD----IIVLGKIIG 274 (434)
T ss_dssp GGGEEE-EEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCS----EEEEEGGGG
T ss_pred CCCEEE-EEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCC----eeeecchhc
Confidence 24555 45566 67899876 7999999999999999999999999977 3222211112221233 358999998
Q ss_pred CccceeEEEEeeccccccCCchhHHHHHHH---HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 013521 290 FTGVRLGWTVVPEELRYSNGYPVIKDFNRI---VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 290 ~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
+|+|+||++++++++ +.+... ......+.+++.+.++.++++... + +++.++++++++++.+.|+
T Consensus 275 -~G~~~G~v~~~~~~~--------~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~-~--~~~~~~~~~~~~~l~~~L~ 342 (434)
T 2epj_A 275 -GGFPVGAVAGSREVM--------SLLTPQGKVFNAGTFNAHPITMAAGLATLKALE-E--EPVYSVSREAAKALEEAAS 342 (434)
T ss_dssp -TTSSCEEEEECHHHH--------TTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHH-H--SCHHHHHHHHHHHHHHHHH
T ss_pred -CCcceeeeeecHHHH--------HhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH-h--cCHHHHHHHHHHHHHHHHH
Confidence 699999999998764 222210 111233467888888877775211 1 3455667777777777776
Q ss_pred hC----CCeeeCCCCceEEEEEcCCC--------------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHH
Q 013521 367 SL----GLKVNGGKNAPYVWVQFPGS--------------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHRE 428 (441)
Q Consensus 367 ~~----g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~ 428 (441)
++ ++....+..|+++|+.++.. ...++...+++ +||.+.|+.. .++|+++..+++
T Consensus 343 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~------~~~~~~~~~t~e 415 (434)
T 2epj_A 343 EVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVFIAPSNL------EAVFTGLPHQGE 415 (434)
T ss_dssp HHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT------SCEECCTTCSHH
T ss_pred HHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeEEeccCC------CcEEEeccCCHH
Confidence 53 55322223678999998641 13456666665 5999999742 357888777999
Q ss_pred HHHHHHHHHHhh
Q 013521 429 YISEACRRLKNF 440 (441)
Q Consensus 429 ~~~~~l~~l~~~ 440 (441)
++++++++|+++
T Consensus 416 ~i~~~l~~l~~~ 427 (434)
T 2epj_A 416 ALEIAVEGLRSS 427 (434)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 183
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.94 E-value=9.2e-25 Score=214.70 Aligned_cols=311 Identities=16% Similarity=0.131 Sum_probs=203.2
Q ss_pred CCCCCcHHHHHHHHHHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCC
Q 013521 82 TTQPIPDIITSAMAEHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSN 158 (441)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~g 158 (441)
.+++.++.+.+++. . ...+.|+. .....++++.+++++ +. +++++|+|+++++.+ +..++++|
T Consensus 30 ~~~~~~~~~~~~~~---~-----~~~~~y~~~~~~~~~~l~~~la~~~----g~--~~~~~~~~gt~a~~~al~~l~~~g 95 (412)
T 2cb1_A 30 YGFKTLEEGQERFA---T-----GEGYVYARQKDPTAKALEERLKALE----GA--LEAVVLASGQAATFAALLALLRPG 95 (412)
T ss_dssp CCCSSHHHHHHHHH---H-----CCSCSBTTTCCHHHHHHHHHHHHHH----TC--SEEEEESSHHHHHHHHHHTTCCTT
T ss_pred eecCChHHHHHHhc---c-----ccCcCcCCCCChHHHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHHhCCC
Confidence 34556666655553 1 22234543 356788999999986 43 489999999999998 66678999
Q ss_pred CEEEEeCCCchhhHhHHHH-hccccccccccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHH
Q 013521 159 VTVAVQDPSFPAYIDTSVI-VGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQ 235 (441)
Q Consensus 159 d~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~ 235 (441)
|+|+++.|+|++....+.. +...| .+++.++.+. .++++ .+++++|++++|+||||.+++
T Consensus 96 d~vi~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~~-----~~l~~~i~~~~~~v~~~~~~n~~G~~~~--- 158 (412)
T 2cb1_A 96 DEVVAAKGLFGQTIGLFGQVLSLMG---------VTVRYVDPEP-----EAVREALSAKTRAVFVETVANPALLVPD--- 158 (412)
T ss_dssp CEEEEETTCCHHHHHHHHHTTTTTT---------CEEEEECSSH-----HHHHHHCCTTEEEEEEESSCTTTCCCCC---
T ss_pred CEEEEeCCCchhHHHHHHHHHHHcC---------CEEEEECCCH-----HHHHHHhccCCeEEEEeCCCCCCccccc---
Confidence 9999999999887665433 22112 4788887641 11221 357899999999999999998
Q ss_pred HHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccc--------c
Q 013521 236 LKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRY--------S 307 (441)
Q Consensus 236 ~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~--------~ 307 (441)
+++|+++|++||+++|+|++|..+.... .++ . .+.++++.|+||.++.||.|+|++++.++.+. .
T Consensus 159 l~~i~~l~~~~~~~li~D~~~~~~~~~~--~~~-~----~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 231 (412)
T 2cb1_A 159 LEALATLAEEAGVALVVDNTFGAAGALC--RPL-A----WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQ 231 (412)
T ss_dssp HHHHHHHHHHHTCEEEEECGGGTTTTSC--CGG-G----GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGC
T ss_pred HHHHHHHHHHcCCEEEEECCCccccccC--Ccc-c----cCCeEEEECCcccccCCCCcEEEEEEecccccccccccccc
Confidence 8999999999999999999998652211 111 1 24569999999999889999999987663210 0
Q ss_pred CC------------chhHHHHHHHH-hhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee
Q 013521 308 NG------------YPVIKDFNRIV-CTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVN 373 (441)
Q Consensus 308 ~~------------~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 373 (441)
.. ....+.++... .......++.....+...++ .+....++.+++.+.+.+.|.+. ++...
T Consensus 232 ~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~-----~l~~~~~~~~~~~~~l~~~L~~~~~v~~v 306 (412)
T 2cb1_A 232 PDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLE-----TVALRVARMSETARFLAERLQGHPKVKAL 306 (412)
T ss_dssp C-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGG-----GHHHHHHHHHHHHHHHHHHHHTCTTCSEE
T ss_pred ccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCc-----hHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 00 01122232221 11111223443333332332 23445556677888899999886 67632
Q ss_pred -CC----------------CCceEEEEEcCCCChHHHHHHHHHhcCeEEeCCC---------CcCC--------------
Q 013521 374 -GG----------------KNAPYVWVQFPGSSSWDVFAEILEKTHILTIPGS---------GFGP-------------- 413 (441)
Q Consensus 374 -~~----------------~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~---------~f~~-------------- 413 (441)
.| ..+.++.+.+ + + .+.+..++++.||.+ .++ .+..
T Consensus 307 ~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~-~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~ 382 (412)
T 2cb1_A 307 RYPGLPEDPAHRNARKYLASGGPILTLDL-G-D-LERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQA 382 (412)
T ss_dssp ECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-S-HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHT
T ss_pred ECCCCCCCccHHHHHHhCCCCceEEEEEe-C-C-HHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhc
Confidence 22 2356788888 4 4 344556666779999 774 1210
Q ss_pred -CCCCeEEEEeec--CHHHHHHHHHHHHh
Q 013521 414 -GGNEHIRVSAFG--HREYISEACRRLKN 439 (441)
Q Consensus 414 -~~~~~iRls~~~--~~~~~~~~l~~l~~ 439 (441)
..++.||+|+.. ++++++.+++.|++
T Consensus 383 g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 383 GVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 016799999843 67889999988875
No 184
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.94 E-value=8e-27 Score=230.75 Aligned_cols=336 Identities=11% Similarity=0.066 Sum_probs=200.8
Q ss_pred CCCeEEeCCCCC--CC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIGDT--TQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g~~--~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
++.++|+..+.. .+ ..+|.+.+++.+.+.+. ....| +.....+|++.+++++ + .+++|++|+|++++
T Consensus 52 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~----~~~~~-~~~~~~~la~~l~~~~----~-~~~~v~~~~sGsea 121 (429)
T 4e77_A 52 GKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG----LSFGA-PTEMEVKMAQLVTDLV----P-TMDMVRMVNSGTEA 121 (429)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC----SCCSS-CCHHHHHHHHHHHHHS----T-TCSEEEEESSHHHH
T ss_pred CCEEEECCCchhccccCCCCHHHHHHHHHHHHhC----cccCC-CCHHHHHHHHHHHhhC----C-CCCEEEEeCcHHHH
Confidence 567899987753 23 25899999999988652 12234 4445556666666653 4 67899999999999
Q ss_pred HHH-HHH--hcCCCCEEEEeCCCchhhHhHHHHhcccccccc-----cc---CccceeEEeecCCCCCccCCCCC----C
Q 013521 148 ISR-LQM--LLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-----ET---GKYRNIVYMNCRPENNFFPDLST----T 212 (441)
Q Consensus 148 l~~-l~~--l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-----~~---~~~~~v~~v~~~~~~~~~~~~~~----~ 212 (441)
+.. +.. ...+++.|++.+++|++...........+.+.. .. .....+..++.++ ..++++ .
T Consensus 122 ~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~le~~l~~~ 197 (429)
T 4e77_A 122 TMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYND----LASVRQAFEQY 197 (429)
T ss_dssp HHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTC----HHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCC----HHHHHHHHHhc
Confidence 997 432 224568999999999887542221111000000 00 0001223333211 111111 1
Q ss_pred CCccEEEEcCCCCccc-cC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCC
Q 013521 213 SRTDIIFFCSPNNPTG-HA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG-~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
++..++++++|+||+| .+ .+++.+++|.++|++||+++|+||+|.+| ..+.......+.-.++ +.||||.++
T Consensus 198 ~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pd----i~t~sK~~~- 271 (429)
T 4e77_A 198 PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPD----LTCLGKIIG- 271 (429)
T ss_dssp TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCS----EEEEEGGGG-
T ss_pred CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCC----eeeeccccc-
Confidence 2233456678866654 33 34667999999999999999999999987 4332222222221233 358999998
Q ss_pred ccceeEEEEeeccccccCCchhHHHHHHH---HhhhcCCCcHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVVPEELRYSNGYPVIKDFNRI---VCTCFNGASNIVQAGGLACLSPDG-FQALRTVIDYYKENAKIIVDAFQ 366 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~ 366 (441)
+|+|+||++++++++ +.+... .....++.+++++.++.++++... ...+++.++..+..++.+.+.+.
T Consensus 272 ~G~~~G~~~~~~~~~--------~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 343 (429)
T 4e77_A 272 GGMPVGAFGGRREVM--------NALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAK 343 (429)
T ss_dssp TTSCCEEEEECHHHH--------TTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECHHHH--------HHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988774 222211 122334578888888888776211 12223333333333334444444
Q ss_pred hCCCeeeCCCCceEEEEEcCCCCh---------------HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHH
Q 013521 367 SLGLKVNGGKNAPYVWVQFPGSSS---------------WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYIS 431 (441)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~ 431 (441)
++++....+..|+++|+.++.... .++...++++ ||.+.|+. ...+|+++..++++++
T Consensus 344 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~~~~~~~~t~e~i~ 416 (429)
T 4e77_A 344 EENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSA------FEAGFMSLAHSNEDIQ 416 (429)
T ss_dssp HTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSST------TSCEECCTTCCHHHHH
T ss_pred hCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecC------CCCEEEeccCCHHHHH
Confidence 445443333468899999974311 5667777665 99999874 2357888777999999
Q ss_pred HHHHHHHhhC
Q 013521 432 EACRRLKNFL 441 (441)
Q Consensus 432 ~~l~~l~~~l 441 (441)
+++++|++++
T Consensus 417 ~~l~~l~~~l 426 (429)
T 4e77_A 417 KTVNAARRCF 426 (429)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 185
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.94 E-value=1.1e-25 Score=218.21 Aligned_cols=312 Identities=14% Similarity=0.105 Sum_probs=209.3
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
++++++.+.|+. ++ +.+++.+.+.. . .|.+..+..++++++++++ +. +++++++|+++++.+ +
T Consensus 7 ~~~~l~~~~~~~--~~-~~~~~~~~~~~----~---~~~~~~~~~~l~~~la~~~----~~--~~~~~~~~gt~a~~~~~ 70 (374)
T 3uwc_A 7 PYSYLERQFADI--EP-YLNDLREFIKT----A---DFTLGAELEKFEKRFAALH----NA--PHAIGVGTGTDALAMSF 70 (374)
T ss_dssp CSCCHHHHTSSC--HH-HHHHHHHHHHH----T---CCSSCHHHHHHHHHHHHHT----TC--SEEEEESCHHHHHHHHH
T ss_pred eeeccccCCCCc--hH-HHHHHHHHHHc----C---CcccChhHHHHHHHHHHHh----CC--CcEEEeCCHHHHHHHHH
Confidence 467777777654 34 88888887754 1 4667789999999999996 43 388899999999987 6
Q ss_pred HHh-cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcCCCCcc
Q 013521 152 QML-LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCSPNNPT 227 (441)
Q Consensus 152 ~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~p~NPt 227 (441)
..+ +++||+|+++.|+|+++...+...| .+++.++.+.+..++++ +++ .+++++|+ |+|||
T Consensus 71 ~~~~~~~gd~v~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~ 135 (374)
T 3uwc_A 71 KMLNIGAGDEVITCANTFIASVGAIVQAG------------ATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYT 135 (374)
T ss_dssp HHTTCCTTCEEEEESSSCHHHHHHHHHTT------------CEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGG
T ss_pred HHcCCCCCCEEEECCCccHHHHHHHHHcC------------CEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCc
Confidence 777 8999999999999999999998888 58889988733222222 222 24677665 89999
Q ss_pred ccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCC--cccCCccceeEEEEeecccc
Q 013521 228 GHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFS--KFAGFTGVRLGWTVVPEELR 305 (441)
Q Consensus 228 G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~S--K~~~~~G~r~G~l~~~~~~~ 305 (441)
|.+.+ +++|.++|++||+++|+|++|..+..-. ......+ . ++++.|+| |.++.+|. .|+++++++.+
T Consensus 136 G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~-~~~~~~~---~--d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~ 205 (374)
T 3uwc_A 136 GNIAD---MPALAKIAKKHNLHIVEDACQTILGRIN-DKFVGSW---G--QFACFSLHPLKNLNVWSD-AGVIITHSDEY 205 (374)
T ss_dssp GCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEET-TEETTSS---S--SEEEEECSSSSSSCCSSC-CEEEEESCHHH
T ss_pred CCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeC-Ceecccc---c--cEEEEeCCCCCcCCccce-eEEEEeCCHHH
Confidence 99988 8889999999999999999998643211 1111111 2 37778866 99974365 89998876543
Q ss_pred ccCCchhHHHHHHHHhhh------------cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-C-Ce
Q 013521 306 YSNGYPVIKDFNRIVCTC------------FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-G-LK 371 (441)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g-~~ 371 (441)
.+.+....... ....+.+...+....+ +.+++..++.+++.+.+.+.|+++ + +.
T Consensus 206 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 273 (374)
T 3uwc_A 206 -------AEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM-----NQLETITEKRRGIAHLYDQSFVDLSEFID 273 (374)
T ss_dssp -------HHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHTGGGTTTEE
T ss_pred -------HHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 33444332210 0112333322222222 224667777788888899999887 4 66
Q ss_pred eeCCC-CceE----EEEEcCCCChHHHHHHHHHhcCeEEeCCCCcC----CC-----------------CCCeEEEEee-
Q 013521 372 VNGGK-NAPY----VWVQFPGSSSWDVFAEILEKTHILTIPGSGFG----PG-----------------GNEHIRVSAF- 424 (441)
Q Consensus 372 ~~~~~-~~~~----~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----~~-----------------~~~~iRls~~- 424 (441)
+.... ++.. +++..+ +..++.+.|.+ +||.+.++.... +. ..+.+||++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~ 350 (374)
T 3uwc_A 274 VPVRREGVYHVFHIYVLRVK--YRDQLFQYLKD-NGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHP 350 (374)
T ss_dssp CCCCCTTEECCCSSEEEEET--THHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCT
T ss_pred eccCCCCCceeeEEEEEEcC--CHHHHHHHHHH-CCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCC
Confidence 54222 2222 223332 45566666655 599999986210 00 0268999973
Q ss_pred -cCHHHHHHHHHHHHhh
Q 013521 425 -GHREYISEACRRLKNF 440 (441)
Q Consensus 425 -~~~~~~~~~l~~l~~~ 440 (441)
.++++++++++.|+++
T Consensus 351 ~~t~edi~~~~~~l~~~ 367 (374)
T 3uwc_A 351 YLTEEEINYIIKKVREF 367 (374)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 4899999999999876
No 186
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.94 E-value=9.2e-25 Score=213.01 Aligned_cols=248 Identities=12% Similarity=0.134 Sum_probs=172.9
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhH----HHHhccccccccc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDT----SVIVGQAGKFLKE 187 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~ 187 (441)
.+...++++.+|+++ +.+ +.++++++++++.+ +..++++||+|+++.|+|++.... +...|
T Consensus 58 ~~~~~~l~~~la~~~----g~~--~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g-------- 123 (389)
T 3acz_A 58 NPTVEQFEEMVCSIE----GAA--GSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFG-------- 123 (389)
T ss_dssp CHHHHHHHHHHHHHH----TCS--EEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTT--------
T ss_pred ChHHHHHHHHHHHHh----CCC--eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcC--------
Confidence 556789999999986 544 55555566699987 566789999999999999987665 35566
Q ss_pred cCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCc
Q 013521 188 TGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS 267 (441)
Q Consensus 188 ~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~ 267 (441)
.+++.++..+.+.+...+ .+++++|++++|+||||.+++ +++|+++|++||+++|+|++|..+... .+
T Consensus 124 ----~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~---~~ 191 (389)
T 3acz_A 124 ----IEVDLIDTSDVEKVKAAW--KPNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL---KP 191 (389)
T ss_dssp ----CEEEEECTTCHHHHHHTC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC---CG
T ss_pred ----CEEEEECCCCHHHHHHhc--CCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc---Cc
Confidence 578888763211111111 257899999999999999998 889999999999999999999865432 12
Q ss_pred ccccCCCcceeEEEecCCcccCCcccee-EEEEeec-cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 268 IYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVPE-ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 268 ~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
+ .. +.++++.|+||.++.+|.|+ ||+++++ ++ .+.+...........++..+.++.+.++.
T Consensus 192 ~-~~----~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~--------~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---- 254 (389)
T 3acz_A 192 L-EL----GADIALHSVSKYINGHGDVIGGVSSAKTAED--------IATIKFYRKDAGSLMAPMDAFLCARGMKT---- 254 (389)
T ss_dssp G-GT----TCSEEEEETTTTTTCSSCCCCEEEEESSHHH--------HHHHHHHHHHHCCCCCHHHHHHHHHHHTT----
T ss_pred c-cc----CCeEEEECChhhccCCCCceeEEEEECcHHH--------HHHHHHHHHhcCCCCCHHHHHHHHcCccH----
Confidence 2 12 34599999999999899998 9999998 66 35555444433444566666666666642
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-Ce--------------eeC---CCCceEEEEEcCCCChHHHHHHHHHhcCeEEeC
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSLG-LK--------------VNG---GKNAPYVWVQFPGSSSWDVFAEILEKTHILTIP 407 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~g-~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 407 (441)
+..+.+...++.+.+.+.|++++ +. +.. ...+.++.+.+++ .+....++++.||.+.+
T Consensus 255 -l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~---~~~~~~~l~~~~i~~~~ 330 (389)
T 3acz_A 255 -LPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS---FEAAKKLMEHLKVCTLA 330 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---HHHHHHHHTTCSSSEEB
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC---HHHHHHHHHhCCCcEEC
Confidence 23344555566777777776642 11 100 1135678888864 34456667777988877
No 187
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.94 E-value=7.6e-25 Score=217.94 Aligned_cols=325 Identities=11% Similarity=-0.007 Sum_probs=220.2
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCc-----EEEcCCcHHHHHH-HHHhcC--
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDE-----IFISDGAQSDISR-LQMLLG-- 156 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-----I~~t~G~~~al~~-l~~l~~-- 156 (441)
+.++.+.+++.+++.. ...+|...++..++++++++++.+.+|.+.++ +++|+|+++++.+ +..+.+
T Consensus 53 ~~~~~v~e~~~~a~~~-----~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~ 127 (452)
T 2dgk_A 53 WDDENVHKLMDLSINK-----NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRW 127 (452)
T ss_dssp CCCHHHHHHHHHTTTC-----BTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcc-----CCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHH
Confidence 4557788888877642 23345556788899999999988877887765 9999999999887 555443
Q ss_pred ------CC-----CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEE
Q 013521 157 ------SN-----VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFF 220 (441)
Q Consensus 157 ------~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i 220 (441)
+| ++|++++ +|..+...+..+| ++++.+++++ +++..|++. .+++++|++
T Consensus 128 ~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G------------~~v~~v~~~~-~~~~~d~~~l~~~i~~~t~~v~~ 193 (452)
T 2dgk_A 128 RKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWD------------VELREIPMRP-GQLFMDPKRMIEACDENTIGVVP 193 (452)
T ss_dssp HHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTT------------CEEEECCCBT-TBCSCCHHHHHHHCCTTEEEEEC
T ss_pred HHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcC------------ceEEEEecCC-CCCeECHHHHHHHHhhCCEEEEE
Confidence 55 5999999 9999999999898 6899999875 234444332 357899999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHc------CcEEEEccccccccc---CCCCCcccccCCCcceeEEEecCCcccCCc
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKAN------GSIIVYDSAYAAYIT---DPSPRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~------~~~ii~De~~~~~~~---~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
++|+||||.+.+ +++|.++|+++ |+++++|++|+.+.. .+.... .+. .++..++..|++|.+ ++
T Consensus 194 ~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~--~~~-~~~~d~~~~~~hK~~-~~ 266 (452)
T 2dgk_A 194 TFGVTYTGNYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVW--DFR-LPRVKSISASGHKFG-LA 266 (452)
T ss_dssp BBSCTTTCBBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC--STT-STTEEEEEEETTTTT-CC
T ss_pred EcCCcCCcccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchh--hcC-CCCCcEEEECccccc-CC
Confidence 999999999988 88888899995 999999999997643 221111 111 234456788899955 58
Q ss_pred cceeEEEEeecc-ccccCCchhHHHHHHHH--h----hhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 013521 292 GVRLGWTVVPEE-LRYSNGYPVIKDFNRIV--C----TCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDA 364 (441)
Q Consensus 292 G~r~G~l~~~~~-~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (441)
|+++||++++++ .+..... ....+.... . ........+.+.+++..+. .+.++++.+++.++++++.+.
T Consensus 267 ~~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg---~~g~~~~~~~~~~~a~~l~~~ 342 (452)
T 2dgk_A 267 PLGCGWVIWRDEEALPQELV-FNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG---REGYTKVQNASYQVAAYLADE 342 (452)
T ss_dssp CSSCEEEEESSGGGSCGGGC-EEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCHHHHHHHhc-cCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999754 3211000 000000000 0 0001113445555555542 345688889999999999999
Q ss_pred HHhC-CCeeeCC----CCceEEEEEcCCC-----ChHHHHHHHHHhcCeEEeCCCCcC-CCCCCeEEEEeec--CHHHHH
Q 013521 365 FQSL-GLKVNGG----KNAPYVWVQFPGS-----SSWDVFAEILEKTHILTIPGSGFG-PGGNEHIRVSAFG--HREYIS 431 (441)
Q Consensus 365 L~~~-g~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~ll~~~gi~v~pg~~f~-~~~~~~iRls~~~--~~~~~~ 431 (441)
|+++ ++++..+ ...+++.+++++. +..++.+.|.++ ||.+....... ..+..++|+++.. ++++++
T Consensus 343 L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id 421 (452)
T 2dgk_A 343 IAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLR-GWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAE 421 (452)
T ss_dssp HHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHT-TCBCCEEECSTTCTTCEEEEEECCTTCCHHHHH
T ss_pred HHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhc-CCeeeeeeCCcccCCeEEEEEEecCCCCHHHHH
Confidence 9988 5887643 3556788888642 236777776655 98654311111 1235689999854 689999
Q ss_pred HHHHHHHhh
Q 013521 432 EACRRLKNF 440 (441)
Q Consensus 432 ~~l~~l~~~ 440 (441)
++++.|+++
T Consensus 422 ~li~~l~~~ 430 (452)
T 2dgk_A 422 LLLEDYKAS 430 (452)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 188
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.94 E-value=1.2e-26 Score=231.57 Aligned_cols=341 Identities=10% Similarity=0.045 Sum_probs=215.3
Q ss_pred CCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHH
Q 013521 71 DARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSD 147 (441)
Q Consensus 71 ~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~a 147 (441)
+++++|+..| ...+ ..+|.+.+++.+.+.+... .|....+..+.+.++++.+.+..+.+.++|++++|++++
T Consensus 54 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~-----~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA 128 (472)
T 3hmu_A 54 GEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPY-----YNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEA 128 (472)
T ss_dssp CCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSC-----CCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccc-----cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Confidence 5678898876 3333 3579999999999876431 222222344555566666655456677899999999999
Q ss_pred HHH-HHHhcC--------CCCEEEEeCCCchhhHhHHHHhcccccccc-ccCccceeEEeecCC--C-CCc---------
Q 013521 148 ISR-LQMLLG--------SNVTVAVQDPSFPAYIDTSVIVGQAGKFLK-ETGKYRNIVYMNCRP--E-NNF--------- 205 (441)
Q Consensus 148 l~~-l~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~v~~v~~~~--~-~~~--------- 205 (441)
+.. +..+.. +++.|++.+|+|+++...+...+....+.. .. ....+..++... . +.+
T Consensus 129 ~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~ 207 (472)
T 3hmu_A 129 NDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLA 207 (472)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHH
Confidence 987 444332 468999999999998766655543211000 00 001344444321 0 000
Q ss_pred -cCCCCC-----C-CCccEEEEcCCCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcce
Q 013521 206 -FPDLST-----T-SRTDIIFFCSPNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREV 277 (441)
Q Consensus 206 -~~~~~~-----~-~~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
..++++ . +++++|++..++|++|.+. +++.+++|.++|++||+++|+||+|..|...+.........-.+|
T Consensus 208 ~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pd- 286 (472)
T 3hmu_A 208 RARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPH- 286 (472)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCS-
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCc-
Confidence 011111 1 2345544434477778755 899999999999999999999999998765543222222322333
Q ss_pred eEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHH--HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013521 278 AIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNR--IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYK 355 (441)
Q Consensus 278 ~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 355 (441)
+.+|||.++.+|+|+||+++++++ .+.+.. .......+.+++++.|+.++|+.... +.+.++++
T Consensus 287 ---i~t~sK~l~gg~~plG~v~~~~~i--------~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~ 352 (472)
T 3hmu_A 287 ---IMTIAKGLSSGYAPIGGSIVCDEV--------AHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE---ENILDHVR 352 (472)
T ss_dssp ---EEEECGGGTTTSSCCEEEEEEHHH--------HHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHH
T ss_pred ---eeeechhhhcCCcceEEEEECHHH--------HHhcccCCccccCCCCCCHHHHHHHHHHHHHHHH---hHHHHHHH
Confidence 236899998444999999999887 344411 11222445788999999988862111 33455566
Q ss_pred -HHHHHHHHHHHhC----CCeeeCCCCceEEEEEcCCCC-------------hHHHHHHHHHhcCeEEeCCCCcCCCCCC
Q 013521 356 -ENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFPGSS-------------SWDVFAEILEKTHILTIPGSGFGPGGNE 417 (441)
Q Consensus 356 -~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 417 (441)
++.+++.+.|+++ .+.... ..|.++++++.... ..++...++++ ||.+.|+. +
T Consensus 353 ~~~~~~l~~~L~~l~~~~~v~~vr-~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g-------~ 423 (472)
T 3hmu_A 353 NVAAPYLKEKWEALTDHPLVGEAK-IVGMMASIALTPNKASRAKFASEPGTIGYICRERCFAN-NLIMRHVG-------D 423 (472)
T ss_dssp HTHHHHHHHHHHGGGGSTTEEEEE-EETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHT-TBCCEEET-------T
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEE-ecCceEEEEEecCccccccccchhHHHHHHHHHHHHHC-CcEEEecC-------C
Confidence 6666666666554 233333 35778888875211 34556666655 99999852 7
Q ss_pred eEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 418 HIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 418 ~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
+|||+ +..+++++++++++|++++
T Consensus 424 ~iRi~p~~~~t~e~i~~~l~~l~~~l 449 (472)
T 3hmu_A 424 RMIISPPLVITPAEIDEMFVRIRKSL 449 (472)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999 5679999999999998763
No 189
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.94 E-value=4.2e-25 Score=215.55 Aligned_cols=282 Identities=13% Similarity=0.090 Sum_probs=193.5
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHH----HHhcccccccc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLK 186 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~ 186 (441)
+.....++++.+|+++ +. +++++++|+++++.+ +..++++||+|+++.|+|++....+ ...|
T Consensus 64 ~~~~~~~l~~~la~~~----g~--~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g------- 130 (392)
T 3qhx_A 64 GNPTRTALEAALAAVE----DA--AFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWN------- 130 (392)
T ss_dssp CCHHHHHHHHHHHHHT----TC--SEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGT-------
T ss_pred CChHHHHHHHHHHHHh----CC--CcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcC-------
Confidence 3456778999999885 44 378888888999987 6778899999999999999887766 3344
Q ss_pred ccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCC
Q 013521 187 ETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPR 266 (441)
Q Consensus 187 ~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~ 266 (441)
.+++.++.++-+.+...+ .+++++|++++|+||||.+.+ +++|+++|++||+++|+|++|..+.... +
T Consensus 131 -----~~~~~v~~~d~~~l~~~i--~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~~-~- 198 (392)
T 3qhx_A 131 -----VEYTPVALADLDAVRAAI--RPTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQQ-P- 198 (392)
T ss_dssp -----CEEEEECTTCHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC-G-
T ss_pred -----cEEEEeCCCCHHHHHHhh--CCCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccCC-h-
Confidence 478888764211111111 358999999999999999998 8999999999999999999998542211 1
Q ss_pred cccccCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 267 SIYEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 267 ~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
+ .. +.++++.|+||.+|.+| +|+||++++++.+ .+.+...........+++.+.++...++.
T Consensus 199 -~-~~----~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~-------~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---- 261 (392)
T 3qhx_A 199 -L-SL----GADVVLHSTTKYIGGHSDVVGGALVTNDEEL-------DQSFAFLQNGAGAVPGPFDAYLTMRGLKT---- 261 (392)
T ss_dssp -G-GG----TCSEEEEETTTTTTCSSCCCCEEEEESCHHH-------HHHHHHHHHHHCCCCCHHHHHHHHHHHTT----
T ss_pred -H-Hh----CCcEEEEcCccccCCCCCceEEEEEECcHHH-------HHHHHHHHHhcCCCCCHHHHHHHHhhhhH----
Confidence 1 12 33589999999999766 8999999985332 45555555555566777777776666653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCe-eeCC----------------CCceEEEEEcCCC-ChHHHHHHHHHhcCeEEe
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSL-GLK-VNGG----------------KNAPYVWVQFPGS-SSWDVFAEILEKTHILTI 406 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------------~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~ 406 (441)
+..+.++..++.+.+.+.|+++ .+. +..| ..|..+++.+++. ...+.+...++..++.+.
T Consensus 262 -l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s 340 (392)
T 3qhx_A 262 -LVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAES 340 (392)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSC
T ss_pred -HHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCC
Confidence 2445566777888888888876 332 2111 1266789999752 222222333445578888
Q ss_pred CCCCcC----C--------------CCCCeEEEEeec--CHHHHHHHHHH
Q 013521 407 PGSGFG----P--------------GGNEHIRVSAFG--HREYISEACRR 436 (441)
Q Consensus 407 pg~~f~----~--------------~~~~~iRls~~~--~~~~~~~~l~~ 436 (441)
.|+.+. + ..++.||||++. .++.++.+.+.
T Consensus 341 ~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~a 390 (392)
T 3qhx_A 341 LGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQA 390 (392)
T ss_dssp CCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHH
T ss_pred CCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHH
Confidence 887642 1 236789999854 23344444443
No 190
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.94 E-value=2.5e-25 Score=217.82 Aligned_cols=285 Identities=16% Similarity=0.151 Sum_probs=187.9
Q ss_pred CCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHH----HHhcccccc
Q 013521 109 GYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKF 184 (441)
Q Consensus 109 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~ 184 (441)
.| +.++..+|++++|+++ +.+ +.|++++|+ +++.++..++++||+|+++.|+|++....+ +..|
T Consensus 63 r~-~~p~~~~l~~~la~~~----g~~-~~i~~~sG~-~ai~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G----- 130 (403)
T 3cog_A 63 RS-GNPTRNCLEKAVAALD----GAK-YCLAFASGL-AATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFG----- 130 (403)
T ss_dssp ----CHHHHHHHHHHHHHH----TCS-EEEEESCHH-HHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTGGGGT-----
T ss_pred CC-CCchHHHHHHHHHHHh----CCC-cEEEECCHH-HHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHHcC-----
Confidence 45 4567889999999997 444 678888875 788874338899999999999999865543 3345
Q ss_pred ccccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcC-cEEEEcccccccccCC
Q 013521 185 LKETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANG-SIIVYDSAYAAYITDP 263 (441)
Q Consensus 185 ~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~-~~ii~De~~~~~~~~~ 263 (441)
.+++.++.++.+.+...+ .+++++|++++|+||||.+++ +++|+++|++|| +++|+|++|..+.+..
T Consensus 131 -------~~v~~v~~~d~~~l~~~i--~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~ 198 (403)
T 3cog_A 131 -------LKISFVDCSKIKLLEAAI--TPETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQR 198 (403)
T ss_dssp -------CEEEEECTTSHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCC
T ss_pred -------CEEEEECCCCHHHHHHhc--CcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCC
Confidence 478888774211111111 357899999999999999998 899999999999 9999999999765421
Q ss_pred CCCcccccCCCcceeEEEecCCcccCCcc-ceeEEEEeec-cccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCC
Q 013521 264 SPRSIYEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPE-ELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSP 341 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 341 (441)
+ + . .+.++++.|+||.++.+| +|+||+++++ ++ .+.+...........+++.+.++...++.
T Consensus 199 -~--~-~----~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l--------~~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 262 (403)
T 3cog_A 199 -P--L-A----LGADISMYSATKYMNGHSDVVMGLVSVNCESL--------HNRLRFLQNSLGAVPSPIDCYLCNRGLKT 262 (403)
T ss_dssp -T--T-T----TTCSEEEEETTTTTTCSSCCCCEEEEECCHHH--------HHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred -c--c-c----cCCeEEEEcChhhccCCCCCeEEEEEECcHHH--------HHHHHHHHHhcCCCCCHHHHHHHHhhhhH
Confidence 2 2 1 234699999999998766 4799999964 44 45555544444455678888777766653
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhC---------------CCeeeCCC---CceEEEEEcCCCChHHHHHHHHHhcCe
Q 013521 342 DGFQALRTVIDYYKENAKIIVDAFQSL---------------GLKVNGGK---NAPYVWVQFPGSSSWDVFAEILEKTHI 403 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~l~~~L~~~---------------g~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gi 403 (441)
+..+.+...++...+.+.|+++ ++++..+. .|.++.+.+++. . +....++++.||
T Consensus 263 -----l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~-~-~~~~~~l~~~~i 335 (403)
T 3cog_A 263 -----LHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT-L-QHAEIFLKNLKL 335 (403)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-H-HHHHHHHHHCSS
T ss_pred -----HHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC-H-HHHHHHHHhCCc
Confidence 1333444455555555555543 22222211 255555677642 2 345556666787
Q ss_pred EEeC---C----------CCcC-----------CCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 404 LTIP---G----------SGFG-----------PGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 404 ~v~p---g----------~~f~-----------~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
.+.. | +.+. ...+++||||++. +++.++.+.+.|+++
T Consensus 336 ~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~ 398 (403)
T 3cog_A 336 FTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAA 398 (403)
T ss_dssp SEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 5432 2 2221 1126899999854 456677777777654
No 191
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.94 E-value=2.2e-25 Score=217.56 Aligned_cols=282 Identities=14% Similarity=0.092 Sum_probs=188.2
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHH----HHhcccccccc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLK 186 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~ 186 (441)
+.....++|+++|+++ +.+ +.|++++| ++++++ +. ++++||+|+++.|+|++....+ +..|
T Consensus 53 ~~~~~~~lr~~la~~~----g~~-~~i~~~sG-t~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G------- 118 (393)
T 1n8p_A 53 QNPNRENLERAVAALE----NAQ-YGLAFSSG-SATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHG------- 118 (393)
T ss_dssp CCHHHHHHHHHHHHHT----TCS-EEEEESCH-HHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTC-------
T ss_pred CChhHHHHHHHHHHHh----CCC-cEEEECCh-HHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcC-------
Confidence 3456789999999996 544 45555555 899998 56 8899999999999999765543 3334
Q ss_pred ccCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHc----CcEEEEcccccccccC
Q 013521 187 ETGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKAN----GSIIVYDSAYAAYITD 262 (441)
Q Consensus 187 ~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~----~~~ii~De~~~~~~~~ 262 (441)
.+++.++.++ +.+...+ .+++++|++++|+||||.+++ +++|+++|++| |+++|+|++|..+...
T Consensus 119 -----~~v~~v~~~d-~~l~~~i--~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~ 187 (393)
T 1n8p_A 119 -----VETSFTNDLL-NDLPQLI--KENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS 187 (393)
T ss_dssp -----SCCEEESSHH-HHHHHHS--CSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC
T ss_pred -----cEEEEeCCCh-HHHHHhc--ccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC
Confidence 4788887752 1211111 257899999999999999998 88999999999 9999999999976653
Q ss_pred CCCCcccccCCCcceeEEEecCCcccCCcccee-EEEEee-ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcC
Q 013521 263 PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL-GWTVVP-EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLS 340 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 340 (441)
. ...+ +.++++.|+||.+|.+|+|+ ||++++ +++ .+.+...........++..+.++...++
T Consensus 188 -~---~~~~----~~di~~~S~sK~~g~~G~rigG~~~~~~~~~--------~~~l~~~~~~~g~~~~~~~~~~~~~~l~ 251 (393)
T 1n8p_A 188 -N---PLNF----GADIVVHSATKYINGHSDVVLGVLATNNKPL--------YERLQFLQNAIGAIPSPFDAWLTHRGLK 251 (393)
T ss_dssp -C---GGGG----TCSEEEEETTTTTTCSSCCCCEEEEESCHHH--------HHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred -C---HHHc----CCeEEEEECcccccCCCCceeEEEEeCCHHH--------HHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence 1 2222 34699999999999899999 999985 455 3455544433333455555555555554
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhCC--Ce-eeCC---------------C--C-ceEEEEEcCCC--ChHHHHHHH
Q 013521 341 PDGFQALRTVIDYYKENAKIIVDAFQSLG--LK-VNGG---------------K--N-APYVWVQFPGS--SSWDVFAEI 397 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~~~---------------~--~-~~~~~~~~~~~--~~~~~~~~l 397 (441)
. +....+...++++.+.+.|+++. +. +..| . . +..+++.+++. ....++..
T Consensus 252 ~-----~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~- 325 (393)
T 1n8p_A 252 T-----LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASS- 325 (393)
T ss_dssp T-----HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHH-
T ss_pred h-----HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhh-
Confidence 2 34455666777788888887762 32 2111 1 2 66899999752 11222222
Q ss_pred HHhcCeEEeCCCC----------cC-----------CCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 398 LEKTHILTIPGSG----------FG-----------PGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 398 l~~~gi~v~pg~~----------f~-----------~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
++..++.+..|+. +. ...++.||||++. ++++++.+.+.|+++
T Consensus 326 l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 326 TRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp CSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 2333555554432 21 0125799999854 567788888887764
No 192
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.94 E-value=2.8e-25 Score=219.09 Aligned_cols=279 Identities=13% Similarity=0.123 Sum_probs=188.1
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHH----Hhccccccccc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSV----IVGQAGKFLKE 187 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~~~~ 187 (441)
.....++++.+|+++ +.+ +.|++++|+ +++++ +..++++||+|+++.|+|++....+. ..|
T Consensus 113 ~~~~~~l~~~lA~l~----g~~-~~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G-------- 178 (445)
T 1qgn_A 113 NPTTVVLEEKISALE----GAE-STLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMG-------- 178 (445)
T ss_dssp CHHHHHHHHHHHHHH----TCS-EEEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGT--------
T ss_pred ChHHHHHHHHHHHHh----CCC-cEEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcC--------
Confidence 345568999999886 554 677777776 88887 67788999999999999998776533 344
Q ss_pred cCccceeEEeecCCCCCccCCCCC--CCCc-cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC
Q 013521 188 TGKYRNIVYMNCRPENNFFPDLST--TSRT-DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS 264 (441)
Q Consensus 188 ~~~~~~v~~v~~~~~~~~~~~~~~--~~~~-~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~ 264 (441)
.+++.++.++. .++++ .+++ ++|++++|+||||.+++ +++|+++|++||+++|+|++|.......
T Consensus 179 ----~~v~~v~~~d~----~~l~~ai~~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~- 246 (445)
T 1qgn_A 179 ----ITATVIDPADV----GALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK- 246 (445)
T ss_dssp ----CEEEEECSSCH----HHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred ----CEEEEeCCCCH----HHHHHHhccCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 47888876411 11221 2467 99999999999999998 7899999999999999999998543211
Q ss_pred CCcccccCCCcceeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc
Q 013521 265 PRSIYEIPGAREVAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG 343 (441)
Q Consensus 265 ~~~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 343 (441)
+ + .+ +.++++.|+||.+|..| +++||+++++++ .+.+...........+++....+...++
T Consensus 247 ~--~-~~----g~Div~~S~sK~~gg~gd~~~G~l~~~~~l--------~~~l~~~~~~~g~~~~~~~a~~~~~~l~--- 308 (445)
T 1qgn_A 247 A--L-AL----GADLVLHSATKFLGGHNDVLAGCISGPLKL--------VSEIRNLHHILGGALNPNAAYLIIRGMK--- 308 (445)
T ss_dssp T--T-TT----TCSEEEECTTTTTTCSSSCCCEEEEECHHH--------HHHHHHHHHHHCCCCCHHHHHHHHHHGG---
T ss_pred c--c-cc----CCEEEEECCcccccccccceEEEEEECHHH--------HHHHHHHHHHhCCCCCHHHHHHHHHhHH---
Confidence 1 1 11 33589999999998444 479999998876 3455444433333345554443333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CC-eeeCC----------------CCceEEEEEcCCC-C-hHHHHHHHHHhcCe
Q 013521 344 FQALRTVIDYYKENAKIIVDAFQSL-GL-KVNGG----------------KNAPYVWVQFPGS-S-SWDVFAEILEKTHI 403 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~-~~~~~----------------~~~~~~~~~~~~~-~-~~~~~~~ll~~~gi 403 (441)
.+..+.++..++++.+.+.|+++ ++ .+..| ..+.++++.+++. . ...++.. ++..++
T Consensus 309 --~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~-l~~~~i 385 (445)
T 1qgn_A 309 --TLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDA-LKIPYI 385 (445)
T ss_dssp --GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHH-CSSSEE
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHh-CCCceE
Confidence 23555566777788899999887 45 33322 1467889999752 1 1222222 222378
Q ss_pred EEeCCCCcCC---------------------CCCCeEEEEeecCHHHHHHHHHHHHhh
Q 013521 404 LTIPGSGFGP---------------------GGNEHIRVSAFGHREYISEACRRLKNF 440 (441)
Q Consensus 404 ~v~pg~~f~~---------------------~~~~~iRls~~~~~~~~~~~l~~l~~~ 440 (441)
.++.|+.+.. ..++.||||++ .++++.+++.|+++
T Consensus 386 ~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~a 441 (445)
T 1qgn_A 386 APSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQA 441 (445)
T ss_dssp CSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHHH
T ss_pred eccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHH
Confidence 8888876521 12579999986 44677777777664
No 193
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.94 E-value=4.2e-26 Score=228.04 Aligned_cols=324 Identities=16% Similarity=0.162 Sum_probs=201.8
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-H
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-L 151 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l 151 (441)
.++|+..+.+ + +.+.+++.+.+. .+...|++..+..+|++++++++ + .+++++|+|+++|+.+ +
T Consensus 42 ~ylD~~~~~~---~-~~v~~a~~~~l~-----~~~~~y~~~~~~~~l~~~la~~~----~--~~~v~~t~~gt~A~~~al 106 (467)
T 2oqx_A 42 VFIDLLTDSG---T-GAVTQSMQAAMM-----RGDEAYSGSRSYYALAESVKNIF----G--YQYTIPTHQGRGAEQIYI 106 (467)
T ss_dssp CSEECSCCSS---C-SCCCHHHHHHTT-----SCCCCSSSCHHHHHHHHHHHHHH----C--CSEEEEEC--CCSHHHHH
T ss_pred eeEecccCCC---c-HHHHHHHHHHhc-----cCcceeccCchhHHHHHHHHHHh----C--cCcEEEcCCcHHHHHHHH
Confidence 3556654432 2 667777777664 22346877788999999999997 3 3799999999999887 6
Q ss_pred HHhcCC-----C----CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEe------ecCC--CCCccCCCCC---
Q 013521 152 QMLLGS-----N----VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYM------NCRP--ENNFFPDLST--- 211 (441)
Q Consensus 152 ~~l~~~-----g----d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v------~~~~--~~~~~~~~~~--- 211 (441)
..++++ | |+|++..+.|..+.......|. .+... +.+. ...+..|++.
T Consensus 107 ~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~ 174 (467)
T 2oqx_A 107 PVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGC------------TVRNVYIKEAFDTGVRYDFKGNFDLEGLER 174 (467)
T ss_dssp HHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTC------------EEEECBCTTTTCTTSCCTTTTCBCHHHHHH
T ss_pred HHHhccccccCCCCccceEEecccccccchhhhhccCc------------ceeeccccccccCCCCCCccCCcCHHHHHH
Confidence 666777 8 9988875444544445544442 22221 1110 0111223221
Q ss_pred --C----CCccEEEEcCCCCcc-ccCCCHHHHHHHHHHHHHcCcEEEEcccccc----------cccCCCCCcccccC--
Q 013521 212 --T----SRTDIIFFCSPNNPT-GHAATWQQLKKLVEFAKANGSIIVYDSAYAA----------YITDPSPRSIYEIP-- 272 (441)
Q Consensus 212 --~----~~~~~v~i~~p~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~~~~----------~~~~~~~~~~~~~~-- 272 (441)
. +++++|++++||||| |.+++.+++++|+++|++||+++|+|+++.. ..+.+ .+...+.
T Consensus 175 ~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g--~~~~~~~~~ 252 (467)
T 2oqx_A 175 GIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKD--WTIEQITRE 252 (467)
T ss_dssp HHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTT--SCHHHHHHH
T ss_pred HHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccC--ccHHHHhhh
Confidence 1 368999999999998 8999999999999999999999999966542 12222 2222221
Q ss_pred --CCcceeEEEecCCcccCCc-cceeEEEEeecc-ccccCCchhHHHHHHHHhhh-----cCCCcHHHHHHHHHhcCCCc
Q 013521 273 --GAREVAIEISSFSKFAGFT-GVRLGWTVVPEE-LRYSNGYPVIKDFNRIVCTC-----FNGASNIVQAGGLACLSPDG 343 (441)
Q Consensus 273 --~~~~~~i~i~S~SK~~~~~-G~r~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~l~~~~ 343 (441)
...+ +++.|+||.+|+| | ||++++++ ++.. ...+....... ....+.....+....+.
T Consensus 253 ~~~~~d--~~~~s~sK~~g~~~G---g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~--- 319 (467)
T 2oqx_A 253 TYKYAD--MLAMSAKKDAMVPMG---GLLCMKDDSFFDV-----YTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY--- 319 (467)
T ss_dssp HGGGCS--EEEEESSSTTCCSSC---EEEEECSGGGHHH-----HHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH---
T ss_pred hhccCC--eEEEecccccCCCCc---eEEEecChhHHHH-----HHHHHHhhhccCCcccccchhhhHHHHHHHhhH---
Confidence 1123 4578999999866 4 88888776 4210 12222221111 11122222211111111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcC----CCC-----hHHHHHHHHHhcCeEEeCCCCc--
Q 013521 344 FQAL-RTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFP----GSS-----SWDVFAEILEKTHILTIPGSGF-- 411 (441)
Q Consensus 344 ~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~ll~~~gi~v~pg~~f-- 411 (441)
.++ +...++.+++++.+.+.|++.++.+. +.+++++|++++ +.+ ...+...|++++||.+.|+..|
T Consensus 320 -~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~ 397 (467)
T 2oqx_A 320 -DGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLL 397 (467)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHHHHHTTCCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHH
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHCCCeee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccc
Confidence 111 22345556788899999988788777 678889999983 223 2334677646679999996543
Q ss_pred CC---------CCCCeEEEEee---cCHHHHHHHHHHHHhh
Q 013521 412 GP---------GGNEHIRVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 412 ~~---------~~~~~iRls~~---~~~~~~~~~l~~l~~~ 440 (441)
+. .+.++|||++. .+++++++++++|+++
T Consensus 398 ~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~ 438 (467)
T 2oqx_A 398 GRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438 (467)
T ss_dssp CBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHH
T ss_pred cccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 21 12479999985 7899999999999875
No 194
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.93 E-value=5.8e-26 Score=225.70 Aligned_cols=337 Identities=9% Similarity=0.060 Sum_probs=213.3
Q ss_pred CCCeEEeCCCC--CCCC-CcHHHH-H-HHHH---HHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCC-CCCCcEEEc
Q 013521 71 DARLIRLGIGD--TTQP-IPDIIT-S-AMAE---HAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMG-IEGDEIFIS 141 (441)
Q Consensus 71 ~~~~i~l~~g~--~~~~-~~~~~~-~-al~~---~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~-~~~~~I~~t 141 (441)
+..++|+..+. .++. .++.+. + ++.+ .+..... ....| +.....++++.+++++ + ..+++|++|
T Consensus 53 g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~--~~~~~-~~~~~~~la~~la~~~----~~~~~~~v~~~ 125 (449)
T 2cjg_A 53 GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKP--SNSDV-YSVAMARFVETFARVL----GDPALPHLFFV 125 (449)
T ss_dssp CCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCC--CTTTC-CCHHHHHHHHHHHHHH----CCTTCCEEEEE
T ss_pred CcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCC--CCccc-CCHHHHHHHHHHHHhc----CCCCCCEEEEe
Confidence 34678876554 2332 478899 8 9999 6654210 01123 2333456666666665 3 567899999
Q ss_pred CCcHHHHHH-HHHh---cC-----------CCCEEEEeCCCchhhHhHHHHhccc-----cccccccCccceeEEeecCC
Q 013521 142 DGAQSDISR-LQML---LG-----------SNVTVAVQDPSFPAYIDTSVIVGQA-----GKFLKETGKYRNIVYMNCRP 201 (441)
Q Consensus 142 ~G~~~al~~-l~~l---~~-----------~gd~Vlv~~p~y~~~~~~~~~~g~~-----~~~~~~~~~~~~v~~v~~~~ 201 (441)
+|++++++. +..+ .+ +||.|++.+|+|+++...+...+.. ..+.+.. .+++.++.++
T Consensus 126 ~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d 202 (449)
T 2cjg_A 126 EGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFD---WPRIDAPYMR 202 (449)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCC---CCEECCCCCC
T ss_pred CchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCC---CCcEEEcCCC
Confidence 999999987 4322 22 2899999999999875543332211 0011000 1455565543
Q ss_pred --CCC-------------ccCCCCC-CCCccEEEEcCC-CCccc-cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC
Q 013521 202 --ENN-------------FFPDLST-TSRTDIIFFCSP-NNPTG-HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP 263 (441)
Q Consensus 202 --~~~-------------~~~~~~~-~~~~~~v~i~~p-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~ 263 (441)
... +...+.. .+++++|+ ++| +|||| .+++.+++++|.++|++||+++|+||+|.++...+
T Consensus 203 ~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g 281 (449)
T 2cjg_A 203 PGLDEPAMAALEAEALRQARAAFETRPHDIACFV-AEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG 281 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEE-ECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred chhhccccchhhHHHHHHHHHHHHhcCCceEEEE-EeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccC
Confidence 111 1000111 24666655 556 79999 58999999999999999999999999999876654
Q ss_pred CCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCc
Q 013521 264 SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDG 343 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 343 (441)
.........-.++ +.||||.+ |+||++++++++..-... .+.........+.+++.+.++.++++..
T Consensus 282 ~~~~~~~~~~~~d----i~t~sK~l-----~iG~~~~~~~~~~~l~~~---~~~~~~~~~t~~~n~~~~~aa~aal~~~- 348 (449)
T 2cjg_A 282 TAWAYQQLDVAPD----IVAFGKKT-----QVCGVMAGRRVDEVADNV---FAVPSRLNSTWGGNLTDMVRARRILEVI- 348 (449)
T ss_dssp SSSTHHHHTCCCS----EEEECGGG-----SSEEEEECGGGGGSTTCT---TTSTTSSCCSSSSCHHHHHHHHHHHHHH-
T ss_pred cceeecccCCCce----EEEecCcc-----cEEEEEECHHHhhhhhhc---ccCCcccccCCCCCHHHHHHHHHHHHHH-
Confidence 3222222221223 33799987 799999998774210000 0111112233457889999888888621
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----C--CeeeCCCCceEEEEEcCCC-ChHHHHHHHHHhcCeEEeCCCCcCCCCC
Q 013521 344 FQALRTVIDYYKENAKIIVDAFQSL----G--LKVNGGKNAPYVWVQFPGS-SSWDVFAEILEKTHILTIPGSGFGPGGN 416 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~l~~~L~~~----g--~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 416 (441)
.+ +.+.++++++++++.+.|+++ . +.... ..|.|++++++.. ...++...+++ +||.+.|+. .
T Consensus 349 ~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g------~ 418 (449)
T 2cjg_A 349 EA--EGLFERAVQHGKYLRARLDELAADFPAVVLDPR-GRGLMCAFSLPTTADRDELIRQLWQ-RAVIVLPAG------A 418 (449)
T ss_dssp HH--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEE-EETTEEEEECSSHHHHHHHHHHHHH-TTEECEEET------T
T ss_pred Hh--ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEe-eccEEEEEEECChHHHHHHHHHHHH-CCeEEecCC------C
Confidence 11 345677778888888888753 2 43343 3577888898642 34567777775 599999862 5
Q ss_pred CeEEEEe--ecCHHHHHHHHHHHHhhC
Q 013521 417 EHIRVSA--FGHREYISEACRRLKNFL 441 (441)
Q Consensus 417 ~~iRls~--~~~~~~~~~~l~~l~~~l 441 (441)
++||+++ ..+++++++++++|++++
T Consensus 419 ~~iRi~~~~~~t~e~i~~~l~~l~~~l 445 (449)
T 2cjg_A 419 DTVRFRPPLTVSTAEIDAAIAAVRSAL 445 (449)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 7999964 569999999999998763
No 195
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.93 E-value=1.6e-25 Score=222.02 Aligned_cols=279 Identities=11% Similarity=0.090 Sum_probs=186.4
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGK 190 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~ 190 (441)
+.....++++.+|+ + +.+ +++++|+|+++++.+ +..++++||+|+++.|+|+++...+...|
T Consensus 55 ~~~~~~~~~~~la~-~----g~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G----------- 117 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-H----SDY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQ----------- 117 (446)
T ss_dssp CSSHHHHHHHHHCS-C----TTE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHT-----------
T ss_pred cchHHHHHHHHHHh-c----CCC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcC-----------
Confidence 45556677777777 5 655 789999999999997 67778999999999999999999998888
Q ss_pred cceeEEeec--CCC----CCccC-CCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccC
Q 013521 191 YRNIVYMNC--RPE----NNFFP-DLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITD 262 (441)
Q Consensus 191 ~~~v~~v~~--~~~----~~~~~-~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~ 262 (441)
.+++.++. +++ ..+++ .+ ..++++++++++ +|+||.+++ +++|+++|++||+++|+||+|+. +.+.
T Consensus 118 -~~~~~v~~~~~~~~~~~~~~d~~~l-~~~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f~ 191 (446)
T 2x3l_A 118 -QEGHFIETHQSPLTNHYNKVNLSRL-NNDGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGLQ 191 (446)
T ss_dssp -CCEEECEEEECTTTSSEEEEEC--------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTST
T ss_pred -CeEEEEeCeeccccCcCCCCCHHHH-cCCCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhccC
Confidence 47777777 432 11222 12 346789999999 566999999 88999999999999999999986 3333
Q ss_pred CCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHH-hhhcCCCcHHHHHHH---HHh
Q 013521 263 PSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIV-CTCFNGASNIVQAGG---LAC 338 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~---~~~ 338 (441)
+.+.+..... ..+++.|+||+++ ++.++||++++++.+. ...+.... .....+++.....+. ...
T Consensus 192 ~~~~~~~~~g----~Di~~~S~~K~l~-~~~g~g~l~~~~~~i~------~~~~~~~~~~~~~~s~~~~~~aal~~a~~~ 260 (446)
T 2x3l_A 192 GFPDSTLNYQ----ADYVVQSFHKTLP-ALTMGSVLYIHKNAPY------RENIIEYLSYFQTSSPSYLIMASLESAAQF 260 (446)
T ss_dssp TSCCCGGGGT----CSEEEECHHHHSS-SCTTCEEEEEETTCTT------HHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred CCCCChHHcC----CCEEEECCccccc-cccccEEEEEcCCcCC------HHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 3233333332 2389999999764 5556899999888642 11222211 111222333332222 222
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCceEEEEEcCCCChHHHHHHHHHhcCeEEe-CCCCcCCCCCC
Q 013521 339 LSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKNAPYVWVQFPGSSSWDVFAEILEKTHILTI-PGSGFGPGGNE 417 (441)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~~~~~~ 417 (441)
+...+. +++.++.++..+.+.+. |+++..+.++.++|+.+++.+..++.+.|.++ ||.+. +| .+
T Consensus 261 l~~~g~---~~~~~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~-GI~v~~~g-------~~ 325 (446)
T 2x3l_A 261 YKTYDS---TLFFAKRAQLIECLENK----GFEMLQVDDPLKLLIKYEGFTGHDIQNWFMNA-HIYLELAD-------DY 325 (446)
T ss_dssp HHHCCC---HHHHHHHHHHHHHHHHH----TCEEEECSSTTEEEEECTTSCHHHHHHHHHHT-TEEESEEC-------SS
T ss_pred HHHhCH---HHHHHHHHHHHHHHHHc----CCEECcCCCCeEEEEEeCCcCHHHHHHHHHHC-CCEEEecC-------CC
Confidence 221111 22344444444444444 77776655566899999865667777777766 99997 43 35
Q ss_pred eEEEEee--cCHHHHHHHHHHHHhh
Q 013521 418 HIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 418 ~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
++|+++. .+++++ +++++|+++
T Consensus 326 ~iRi~~~~~~t~e~i-~l~~aL~~~ 349 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-LFDSLLRKI 349 (446)
T ss_dssp CEEEECCCCCTTCCC-CHHHHHHHH
T ss_pred EEEEEeecCCCHHHH-HHHHHHHHH
Confidence 8999974 377888 888888765
No 196
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.93 E-value=5.6e-24 Score=210.85 Aligned_cols=346 Identities=17% Similarity=0.147 Sum_probs=213.4
Q ss_pred chHHHHHHHHHHHhcCCCCCeEEeCCCCCCCCCcHHHHHHHH--HHHhhccCCCCCCCCCC--CcCcHHHHHHHHHHHhh
Q 013521 54 LFPEISMRESEHIRKHPDARLIRLGIGDTTQPIPDIITSAMA--EHAFALSTVKGYKGYGA--EQGNMALRTAIADKFYK 129 (441)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~al~--~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~ 129 (441)
...++.+.......+....-...++.|.++...|+.+.+.+. +.+.. +..|.+ ..|..++.+++.+++.+
T Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~la~ 119 (438)
T 1wyu_A 46 PEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTA------YTPYQPEVSQGVLQATFEYQTMIAE 119 (438)
T ss_dssp CHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHC------CSCCSGGGCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhhhc------CCCCcchhhhhHHHHHHHHHHHHHH
Confidence 344454444444333221124577778777777776644432 22121 122321 34555555555555554
Q ss_pred hCCCCCCcEEEcCCcHHHHHH-HHH-hcCCCCEEEEeCCCchhhHhHHHH----hccccccccccCccceeEEeecCCCC
Q 013521 130 DMGIEGDEIFISDGAQSDISR-LQM-LLGSNVTVAVQDPSFPAYIDTSVI----VGQAGKFLKETGKYRNIVYMNCRPEN 203 (441)
Q Consensus 130 ~~~~~~~~I~~t~G~~~al~~-l~~-l~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~~~~~~~v~~v~~~~~~ 203 (441)
.+|.++++|++++|++.+... +.. .+++||+|+++.|+|+.+...++. .| .+++.++.. ++
T Consensus 120 ~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G------------~~v~~v~~~-~~ 186 (438)
T 1wyu_A 120 LAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVG------------AKLLTLPLE-GG 186 (438)
T ss_dssp HHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTT------------CEEEEECCB-TT
T ss_pred HhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCC------------CEEEEEcCc-CC
Confidence 457888899999999955443 222 357899999999999998766543 56 588888862 22
Q ss_pred CccCCCCC-CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccc---ccccccCCCCCcccccCCCcceeE
Q 013521 204 NFFPDLST-TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSA---YAAYITDPSPRSIYEIPGAREVAI 279 (441)
Q Consensus 204 ~~~~~~~~-~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~---~~~~~~~~~~~~~~~~~~~~~~~i 279 (441)
..+++. .+++++|++++| ||||.+.+ +++|+++|++||+++|+|.. ++.+ +.+ ..+ +..+
T Consensus 187 --~~d~~~i~~~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~~-----~~~-~~~----g~D~ 250 (438)
T 1wyu_A 187 --RTPLPEVGEEVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGVL-----KPP-GAY----GADI 250 (438)
T ss_dssp --BCCCCCCCTTEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTB-----CCH-HHH----TCSE
T ss_pred --ccCHHHhCCCeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccCc-----CCC-ccC----CCCE
Confidence 233322 367999999999 99999997 88999999999999996622 3211 111 222 2236
Q ss_pred EEecCCcccC----CccceeEEEEeeccccccCCchh-------------------HHHHHHHHhhhcCC--CcHHHHHH
Q 013521 280 EISSFSKFAG----FTGVRLGWTVVPEELRYSNGYPV-------------------IKDFNRIVCTCFNG--ASNIVQAG 334 (441)
Q Consensus 280 ~i~S~SK~~~----~~G~r~G~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~a 334 (441)
++.| +|.|| +.|.|+||++++++++..-.... .+...+....+.+. .+.+...+
T Consensus 251 ~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~ 329 (438)
T 1wyu_A 251 AVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALM 329 (438)
T ss_dssp EEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHH
T ss_pred EEEC-CcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHH
Confidence 6766 66543 45779999999988753210000 01111111111111 12222221
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceE--EEEEcCCCChHHHHHHHHHhcCeEE--eCCC
Q 013521 335 GLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPY--VWVQFPGSSSWDVFAEILEKTHILT--IPGS 409 (441)
Q Consensus 335 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~~gi~v--~pg~ 409 (441)
+...+...+.+.++++.++++++++++.+.|+++ |+++..+ ..+| +.+.++ .+..++.++|.++ ||.+ .++.
T Consensus 330 aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~~~~~~~~~~~-~~~~~~~~~L~~~-gi~v~~~~~~ 406 (438)
T 1wyu_A 330 GAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTP-KPFFNEFALALP-KDPEAVRRALAER-GFHGATPVPR 406 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSC-SSBCSEEEEECS-SCHHHHHHHHHHT-TCCCCEECCT
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCC-CCeEEEEEEeCC-CCHHHHHHHHHHC-Cceecccccc
Confidence 2111221122346788899999999999999998 9988764 3343 334443 3567788887765 9999 7777
Q ss_pred CcCCCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 410 GFGPGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 410 ~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
.|. ++++|+++. .+++++++++++|++++
T Consensus 407 ~~~---~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 407 EYG---ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp TSC---SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ccC---CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 654 679999985 58999999999998864
No 197
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.92 E-value=8.2e-24 Score=212.78 Aligned_cols=328 Identities=10% Similarity=0.046 Sum_probs=219.9
Q ss_pred CCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC--CCcEE---EcCCcHHHHHH-HHHhcCC
Q 013521 84 QPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE--GDEIF---ISDGAQSDISR-LQMLLGS 157 (441)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~--~~~I~---~t~G~~~al~~-l~~l~~~ 157 (441)
.++++.+.+++.+++.. ...+|...++..++++.+.+++.+.++++ +++++ +|+|+++++.+ +..+..+
T Consensus 66 ~~~~~~v~~~l~~~~~~-----~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~ 140 (502)
T 3hbx_A 66 TWMEPECDKLIMSSINK-----NYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRK 140 (502)
T ss_dssp CCCCHHHHHHHHHTTTC-----BTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcc-----CCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHH
Confidence 34577888888887653 22334445567888888888888767776 66655 48999999887 5555444
Q ss_pred --------CC-----EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEE
Q 013521 158 --------NV-----TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIF 219 (441)
Q Consensus 158 --------gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~ 219 (441)
|+ .|+++.++|..+...++.+| ++++.++++++ ++..|++. .+++++|+
T Consensus 141 ~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~t~~v~ 207 (502)
T 3hbx_A 141 WQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFE------------VELKEVKLSEG-YYVMDPQQAVDMVDENTICVA 207 (502)
T ss_dssp HHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTT------------CEEEEECCBTT-BCSCCHHHHHHHCCTTEEEEE
T ss_pred HhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcC------------ceeEEEecCCC-cCcCCHHHHHHHHhhCCEEEE
Confidence 76 99999999999999999998 58999998753 34444332 36789999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHc------CcEEEEccccccccc---CCCCCcccccCCCcceeEEEecCCcccCC
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKAN------GSIIVYDSAYAAYIT---DPSPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~------~~~ii~De~~~~~~~---~~~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
+++|+||||.+.+ +++|.++|+++ |+++++|++|+.+.. .+.... .+. ..+..++..|.+|.++
T Consensus 208 ~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~--~~~-~~~~D~v~~s~hK~l~- 280 (502)
T 3hbx_A 208 AILGSTLNGEFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEW--DFR-LPLVKSINVSGHKYGL- 280 (502)
T ss_dssp EEBSCTTTCCBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC--STT-STTEEEEEEETTTTTC-
T ss_pred EecCCCCCCcccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccc--ccC-CCCceEEEECcccccC-
Confidence 9999999999988 88888889998 999999999986542 111111 111 2344577889999885
Q ss_pred ccceeEEEEeeccccccCCchhHHHH-HHH-Hhhhc-C---CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVVPEELRYSNGYPVIKDF-NRI-VCTCF-N---GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDA 364 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~~~~~~~~~-~~~-~~~~~-~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (441)
++.++||+++.++............+ ... ..... . ....+.+.+++..+. .+.+..+.++..++++++.+.
T Consensus 281 ~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg---~~g~~~~~~~~~~~a~~l~~~ 357 (502)
T 3hbx_A 281 VYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG---HEGYRNVMENCRENMIVLREG 357 (502)
T ss_dssp CCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 77889998886543210000000000 000 00000 0 113344444444443 234577788888899999999
Q ss_pred HHhCC-CeeeCC-CCceEEEEEcCC---CChHHHHHHHHHhcCeEEeCCCCc-CCCCCCeEEEEee--cCHHHHHHHHHH
Q 013521 365 FQSLG-LKVNGG-KNAPYVWVQFPG---SSSWDVFAEILEKTHILTIPGSGF-GPGGNEHIRVSAF--GHREYISEACRR 436 (441)
Q Consensus 365 L~~~g-~~~~~~-~~~~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f-~~~~~~~iRls~~--~~~~~~~~~l~~ 436 (441)
|++++ +++..+ +..+++++++++ .+..++.+.|. ++||.+...... ...+..++|+++. .++++++.+++.
T Consensus 358 L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~ 436 (502)
T 3hbx_A 358 LEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLR-RYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVID 436 (502)
T ss_dssp HHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHH-TTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred HHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHH-hCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHH
Confidence 99984 888765 577888998864 23346666665 459987532211 1223568999984 378999999998
Q ss_pred HHhh
Q 013521 437 LKNF 440 (441)
Q Consensus 437 l~~~ 440 (441)
|+++
T Consensus 437 L~~~ 440 (502)
T 3hbx_A 437 IEKV 440 (502)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 198
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.92 E-value=2.5e-23 Score=203.28 Aligned_cols=298 Identities=14% Similarity=0.106 Sum_probs=199.9
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcC--cHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEE
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQG--NMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVA 162 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g--~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vl 162 (441)
++.+.+++.+.+.. +|.+..| ..++|+++|+++ +. ++|++|+|+++++.+ +..+ +++||+|+
T Consensus 11 ~~~v~~a~~~~~~~--------~~~~~~g~~~~~l~~~la~~~----~~--~~v~~~~ggt~al~~~~~~l~~~~gd~Vl 76 (394)
T 1o69_A 11 GGNELKYIEEVFKS--------NYIAPLGEFVNRFEQSVKDYS----KS--ENALALNSATAALHLALRVAGVKQDDIVL 76 (394)
T ss_dssp -CCHHHHHHHHHHH--------TTTSCTTHHHHHHHHHHHHHH----CC--SEEEEESCHHHHHHHHHHHTTCCTTCEEE
T ss_pred CHHHHHHHHHHHHc--------CCccCCChHHHHHHHHHHHHh----CC--CcEEEeCCHHHHHHHHHHHcCCCCCCEEE
Confidence 45677888887753 2545457 899999999997 43 799999999999998 6667 79999999
Q ss_pred EeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CC---CccEEEEcCCCCccccCCCHH
Q 013521 163 VQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TS---RTDIIFFCSPNNPTGHAATWQ 234 (441)
Q Consensus 163 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~---~~~~v~i~~p~NPtG~~~~~~ 234 (441)
++.|+|+++...+...| .+++.++.+. ++..+++. .+ ++++|++++ |||...+
T Consensus 77 ~~~~~~~~~~~~~~~~g------------~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~-- 137 (394)
T 1o69_A 77 ASSFTFIASVAPICYLK------------AKPVFIDCDE--TYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAK-- 137 (394)
T ss_dssp EESSSCGGGTHHHHHTT------------CEEEEECBCT--TSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC--
T ss_pred ECCCccHHHHHHHHHcC------------CEEEEEEeCC--CCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhh--
Confidence 99999999999998888 5888898873 33333221 12 689999875 8997766
Q ss_pred HHHHHHHHHHHcCcEEEEccccc-ccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee-ccccccCCchh
Q 013521 235 QLKKLVEFAKANGSIIVYDSAYA-AYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP-EELRYSNGYPV 312 (441)
Q Consensus 235 ~~~~i~~~a~~~~~~ii~De~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~-~~~~~~~~~~~ 312 (441)
+++|.++|+++|+++|+|++|+ .+.+.+. ....+ .+.++...|.+|.+ +|.|+||++++ +++
T Consensus 138 -l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~~---~~~~~~s~s~~K~l--~~~~~G~~~~~~~~l-------- 201 (394)
T 1o69_A 138 -MDEIVEICKENDIVLIEDAAEALGSFYKNK--ALGTF---GEFGVYSYNGNKII--TTSGGGMLIGKNKEK-------- 201 (394)
T ss_dssp -HHHHHHHHHHTTCEEEEECTTCTTCEETTE--ETTSS---SSEEEEECCTTSSS--CCSSCEEEEESCHHH--------
T ss_pred -HHHHHHHHHHcCCEEEEECcCcccceeCCc--ccccc---cCcEEEEEeCCccC--CCCCceEEEECCHHH--------
Confidence 8899999999999999999998 4444321 11111 12233333446755 56799999996 455
Q ss_pred HHHHHHHHhhhcCC--------------CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC--
Q 013521 313 IKDFNRIVCTCFNG--------------ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK-- 376 (441)
Q Consensus 313 ~~~~~~~~~~~~~~--------------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-- 376 (441)
.+.+.......... ++.+...++...+ +++++.+++++++++++.+.|.+. +++.++.
T Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-----~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~ 275 (394)
T 1o69_A 202 IEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM-----EVLEQRVLKKREIYEWYKEFLGEY-FSFLDELEN 275 (394)
T ss_dssp HHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHTTT-EECCCCCTT
T ss_pred HHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccc-ccccCCCCC
Confidence 34444432221100 2223332222222 234667788899999999999887 6655432
Q ss_pred --Cce-EEEEEcCCC----------------------ChHHHHHHHHHhcCeEEeCCCCc---CCCCC------------
Q 013521 377 --NAP-YVWVQFPGS----------------------SSWDVFAEILEKTHILTIPGSGF---GPGGN------------ 416 (441)
Q Consensus 377 --~~~-~~~~~~~~~----------------------~~~~~~~~ll~~~gi~v~pg~~f---~~~~~------------ 416 (441)
.++ .+++.++.. +..++.+.|. ++||.+++|... .+...
T Consensus 276 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~ 354 (394)
T 1o69_A 276 SRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLK-NKQIETRPLWKAMHTQEVFKGAKAYLNGNSEL 354 (394)
T ss_dssp EECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHH-HTTCCCBCCCCCGGGCGGGTTCEEEECSHHHH
T ss_pred CcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHH-HcCCcccccCCccccchhhhccCCCCChHHHH
Confidence 222 377777632 3445666655 569999998532 11000
Q ss_pred ---CeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 417 ---EHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 417 ---~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
..+|+.+ ..++++++++++.|+++
T Consensus 355 ~~~~~~~~~~~~~~t~edi~~~~~~l~~~ 383 (394)
T 1o69_A 355 FFQKGICLPSGTAMSKDDVYEISKLILKS 383 (394)
T ss_dssp HHHHEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HhcCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 2345443 35899999999999875
No 199
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.92 E-value=7.4e-24 Score=205.44 Aligned_cols=299 Identities=13% Similarity=0.058 Sum_probs=199.9
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEEEe
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVAVQ 164 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vlv~ 164 (441)
++.+.+++.+.+.. . .|.+..+..++|+++|+++ +. +++++|+|+++++.+ +..+ +++||+|+++
T Consensus 16 ~~~~~~a~~~~~~~----~---~~~~~~~~~~l~~~la~~~----~~--~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~ 82 (373)
T 3frk_A 16 EYEIKFKFEEIYKR----N---WFILGDEDKKFEQEFADYC----NV--NYCIGCGNGLDALHLILKGYDIGFGDEVIVP 82 (373)
T ss_dssp HHHHHHHHHHHHHH----T---CCSSSHHHHHHHHHHHHHH----TS--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CHHHHHHHHHHHHC----C---CccCCchHHHHHHHHHHHh----CC--CeEEEeCCHHHHHHHHHHHcCCCCcCEEEEC
Confidence 46677777776653 1 3666788999999999997 44 489999999999987 6777 7999999999
Q ss_pred CCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC---CC--CCCccEEEEcCCCCccccCCCHHHHHHH
Q 013521 165 DPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL---ST--TSRTDIIFFCSPNNPTGHAATWQQLKKL 239 (441)
Q Consensus 165 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~---~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i 239 (441)
.|+|+++...+...| .+++.++.+++ ++..|+ ++ .+++++|+ |+||||...+ +++|
T Consensus 83 ~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~---l~~i 143 (373)
T 3frk_A 83 SNTFIATALAVSYTG------------AKPIFVEPDIR-TYNIDPSLIESAITEKTKAII---AVHLYGQPAD---MDEI 143 (373)
T ss_dssp TTSCTHHHHHHHHHS------------CEEEEECEETT-TTEECGGGTGGGCCTTEEEEE---EECCTTCCCC---HHHH
T ss_pred CCCcHHHHHHHHHcC------------CEEEEEecccc-ccCcCHHHHHHhcCCCCeEEE---EECCCcCccc---HHHH
Confidence 999999999998888 58888888753 223332 22 35777776 6889999988 8899
Q ss_pred HHHHHHcCcEEEEccccccccc-CCCCCcccccCCCcceeEEEecCC--cccCCccceeEEEEeeccccccCCchhHHHH
Q 013521 240 VEFAKANGSIIVYDSAYAAYIT-DPSPRSIYEIPGAREVAIEISSFS--KFAGFTGVRLGWTVVPEELRYSNGYPVIKDF 316 (441)
Q Consensus 240 ~~~a~~~~~~ii~De~~~~~~~-~~~~~~~~~~~~~~~~~i~i~S~S--K~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~ 316 (441)
.++|++||+++|+|++|+.... +. ..+..+ . .+.+.||| |.++.+| +.|+++++++.+ .+.+
T Consensus 144 ~~l~~~~~~~li~D~a~~~g~~~~~--~~~~~~---~--d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~-------~~~~ 208 (373)
T 3frk_A 144 KRIAKKYNLKLIEDAAQAHGSLYKG--MKVGSL---G--DAAGFSFYPAKNLGSLG-DGGAVVTNDKDL-------AEKI 208 (373)
T ss_dssp HHHHHHHTCEEEEECTTCTTCEETT--EETTSS---S--SEEEEECCTTSSSCCSS-SCEEEEESCHHH-------HHHH
T ss_pred HHHHHHcCCEEEEECCcccCCEECC--Eecccc---c--cEEEEeCcCCCccCccc-eeEEEEeCCHHH-------HHHH
Confidence 9999999999999999985332 21 111111 2 27788877 9987325 478988876543 3444
Q ss_pred HHHHhhhc------------CCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCce--E-
Q 013521 317 NRIVCTCF------------NGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG-KNAP--Y- 380 (441)
Q Consensus 317 ~~~~~~~~------------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~--~- 380 (441)
........ ...+.+...++...+ +.+++..++.++..+.+.+.|++.++.+... .++. +
T Consensus 209 ~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 283 (373)
T 3frk_A 209 KALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKL-----KYLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWY 283 (373)
T ss_dssp HHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCS
T ss_pred HHHHhcCcccCCccccccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeE
Confidence 43332211 112333332222222 2345666777778888888888766444321 1121 1
Q ss_pred -EEEEcCCCChHHHHHHHHHhcCeEEeCCCCcC----C--------CC---------CCeEEEEe--ecCHHHHHHHHHH
Q 013521 381 -VWVQFPGSSSWDVFAEILEKTHILTIPGSGFG----P--------GG---------NEHIRVSA--FGHREYISEACRR 436 (441)
Q Consensus 381 -~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----~--------~~---------~~~iRls~--~~~~~~~~~~l~~ 436 (441)
+.+..+ +..++.+.|.+ +||.++++.... + .+ .+.+|+++ ..++++++++++.
T Consensus 284 ~~~~~~~--~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~ 360 (373)
T 3frk_A 284 TFVIRSE--KRDELQKYLNN-NGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDK 360 (373)
T ss_dssp SEEEEES--SHHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHH
T ss_pred EEEEEeC--CHHHHHHHHHH-CCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHH
Confidence 223332 45566666655 599999775210 0 00 16799997 4489999999999
Q ss_pred HHhh
Q 013521 437 LKNF 440 (441)
Q Consensus 437 l~~~ 440 (441)
|++.
T Consensus 361 l~~~ 364 (373)
T 3frk_A 361 INAW 364 (373)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 9875
No 200
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.92 E-value=7.3e-23 Score=198.04 Aligned_cols=299 Identities=17% Similarity=0.151 Sum_probs=205.0
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh-cCCCCEEEE
Q 013521 86 IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQML-LGSNVTVAV 163 (441)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l-~~~gd~Vlv 163 (441)
.++.+.+++.+.+.. . .|.+..+..++++++|+++ +. +++++|+|+++++.+ +..+ +++||+|++
T Consensus 14 ~~~~v~~a~~~~~~~----~---~~~~~~~~~~l~~~la~~~----~~--~~~~~~~sGt~al~~al~~~~~~~gd~Vi~ 80 (367)
T 3nyt_A 14 IKDKIDAGIQRVLRH----G---QYILGPEVTELEDRLADFV----GA--KYCISCANGTDALQIVQMALGVGPGDEVIT 80 (367)
T ss_dssp HHHHHHHHHHHHHHH----C---CCSSCHHHHHHHHHHHHHH----TC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCHHHHHHHHHHHhc----C---CccCChHHHHHHHHHHHHh----CC--CcEEEeCCHHHHHHHHHHHhCCCCcCEEEE
Confidence 456677777776653 1 3556778999999999997 44 389999999999987 6667 799999999
Q ss_pred eCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC---CC--CCCccEEEEcCCCCccccCCCHHHHHH
Q 013521 164 QDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL---ST--TSRTDIIFFCSPNNPTGHAATWQQLKK 238 (441)
Q Consensus 164 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~---~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~ 238 (441)
+.|+|+++...+...| .+++.++++++. +..++ ++ .+++++|+ |+||||...+ +++
T Consensus 81 ~~~~~~~~~~~~~~~G------------~~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~---~~~ 141 (367)
T 3nyt_A 81 PGFTYVATAETVALLG------------AKPVYVDIDPRT-YNLDPQLLEAAITPRTKAII---PVSLYGQCAD---FDA 141 (367)
T ss_dssp ESSSCTHHHHHHHHTT------------CEEEEECBCTTT-CSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHH
T ss_pred CCCccHHHHHHHHHcC------------CEEEEEecCCcc-CCcCHHHHHHhcCcCCcEEE---eeCCccChhh---HHH
Confidence 9999999999999888 589999987652 23332 22 35777766 7899998877 888
Q ss_pred HHHHHHHcCcEEEEcccccccc-cCCCCCcccccCCCcceeEEEecC--CcccCCccceeEEEEeeccccccCCchhHHH
Q 013521 239 LVEFAKANGSIIVYDSAYAAYI-TDPSPRSIYEIPGAREVAIEISSF--SKFAGFTGVRLGWTVVPEELRYSNGYPVIKD 315 (441)
Q Consensus 239 i~~~a~~~~~~ii~De~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~--SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~ 315 (441)
|.++|++||+++|+|++|+... +++ ..+..+ . ++.+.|| +|.++.+|. .|+++++++.+ .+.
T Consensus 142 i~~la~~~~~~li~D~a~~~g~~~~~--~~~~~~---~--di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l-------~~~ 206 (367)
T 3nyt_A 142 INAIASKYGIPVIEDAAQSFGASYKG--KRSCNL---S--TVACTSFFPSAPLGCYGD-GGAIFTNDDEL-------ATA 206 (367)
T ss_dssp HHHHHHHTTCCBEEECTTTTTCEETT--EETTSS---S--SEEEEECCTTSSSCCSSC-CEEEEESCHHH-------HHH
T ss_pred HHHHHHHcCCEEEEECccccCCeECC--eeccCC---C--CEEEEECCCCCcCCCcCc-eeEEEeCCHHH-------HHH
Confidence 9999999999999999998532 222 112112 1 3888887 899985476 89999865543 344
Q ss_pred HHHHHhh------------hcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-C---c-
Q 013521 316 FNRIVCT------------CFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGK-N---A- 378 (441)
Q Consensus 316 ~~~~~~~------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~---~- 378 (441)
+...... .....+.+...++.+.++ .++...++.+++++.+.+.|++.++.+.... + .
T Consensus 207 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~-----~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 281 (367)
T 3nyt_A 207 IRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLE-----IFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVY 281 (367)
T ss_dssp HHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCC
T ss_pred HHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceee
Confidence 4443322 122345555544444442 2355666777778888888888765543221 1 1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhcCeEEeCCCC--------cC-CC---------CCCeEEEEee--cCHHHHHHHHHHHH
Q 013521 379 PYVWVQFPGSSSWDVFAEILEKTHILTIPGSG--------FG-PG---------GNEHIRVSAF--GHREYISEACRRLK 438 (441)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~--------f~-~~---------~~~~iRls~~--~~~~~~~~~l~~l~ 438 (441)
..+++.++ +..++.+.|.+ +||.++++.. |. .. ....+||++. .++++++..++.|+
T Consensus 282 ~~~~~~~~--~~~~l~~~L~~-~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~ 358 (367)
T 3nyt_A 282 AQYTVRMD--NRESVQASLKA-AGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALT 358 (367)
T ss_dssp SSEEEECS--SHHHHHHHHHH-HTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEeC--CHHHHHHHHHH-CCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHH
Confidence 22445554 45566666554 5999987653 11 00 0256999974 38999999999987
Q ss_pred h
Q 013521 439 N 439 (441)
Q Consensus 439 ~ 439 (441)
+
T Consensus 359 ~ 359 (367)
T 3nyt_A 359 N 359 (367)
T ss_dssp C
T ss_pred H
Confidence 5
No 201
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.92 E-value=2.2e-22 Score=197.11 Aligned_cols=285 Identities=11% Similarity=0.099 Sum_probs=189.4
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHH-hccccccccccCc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVI-VGQAGKFLKETGK 190 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~~~~~~~ 190 (441)
.+-..++++.+|+++ +. +++++++|+++++++ +..++++||+|+++.|.|++....+.. +...|
T Consensus 81 ~p~~~~le~~lA~l~----g~--~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G-------- 146 (415)
T 2fq6_A 81 TLTHFSLQQAMCELE----GG--AGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLG-------- 146 (415)
T ss_dssp CHHHHHHHHHHHHHH----TC--SEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGT--------
T ss_pred CchHHHHHHHHHHHh----CC--CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcC--------
Confidence 345678999999986 54 356777888999987 677889999999999999988766532 11112
Q ss_pred cceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCC
Q 013521 191 YRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYITDPSPR 266 (441)
Q Consensus 191 ~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~--~~~~ii~De~~~~~~~~~~~~ 266 (441)
++++.++.++- .++++ .+++++|++++|+||||.+++ +++|+++|++ ||+++|+|++|+..... .
T Consensus 147 -~~v~~v~~~d~----~~le~ai~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~---~ 215 (415)
T 2fq6_A 147 -VTTSWFDPLIG----ADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLF---K 215 (415)
T ss_dssp -CEEEEECTTCG----GGGGGGCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSS---C
T ss_pred -cEEEEECCCCH----HHHHHhhccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccC---C
Confidence 47888876421 12222 367899999999999999998 8899999999 99999999999854321 1
Q ss_pred cccccCCCcceeEEEecCCcccCCccce-eEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 267 SIYEIPGAREVAIEISSFSKFAGFTGVR-LGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 267 ~~~~~~~~~~~~i~i~S~SK~~~~~G~r-~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
++ .+ +.++++.|+||.+|.+|.+ .||+++++++ ++.+...........++.....+... .+
T Consensus 216 p~-~~----g~Div~~S~sK~lg~~g~~~~G~l~~~~~~--------~~~l~~~~~~~G~~~~~~~a~~~~~~-----l~ 277 (415)
T 2fq6_A 216 AL-DF----GIDVSIQAATKYLVGHSDAMIGTAVCNARC--------WEQLRENAYLMGQMVDADTAYITSRG-----LR 277 (415)
T ss_dssp GG-GG----TCSEEEEETTTTTTCSSSCCCEEEEECTTT--------HHHHHHHHHHTTCCCCHHHHHHHHHH-----HH
T ss_pred cc-cc----CCeEEEEeCccccCCCCCceEEEEEeCHHH--------HHHHHHHHHhcCCCCCHHHHHHHHhh-----hh
Confidence 22 22 3459999999999977755 6999988765 34555444332333344433322222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCe-e-eCC---------------CCceEEEEEcCCCChHHHHHHHHHh---cCeE
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSL-GLK-V-NGG---------------KNAPYVWVQFPGSSSWDVFAEILEK---THIL 404 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~---------------~~~~~~~~~~~~~~~~~~~~~ll~~---~gi~ 404 (441)
.+..+.+...++.+.+.+.|++. .+. + ++. ..+..+++.+++....+....+++. .++.
T Consensus 278 ~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a 357 (415)
T 2fq6_A 278 TLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMA 357 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEe
Confidence 45566677788888888888876 332 1 110 1466789999752112223344433 3456
Q ss_pred EeCCCCcC-------------------CCCCCeEEEEeec--CHHHHHHHHHHHHhh
Q 013521 405 TIPGSGFG-------------------PGGNEHIRVSAFG--HREYISEACRRLKNF 440 (441)
Q Consensus 405 v~pg~~f~-------------------~~~~~~iRls~~~--~~~~~~~~l~~l~~~ 440 (441)
++.|+.+. ...++.||||++. ++++++.+.+.|+++
T Consensus 358 ~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~~ 414 (415)
T 2fq6_A 358 YSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI 414 (415)
T ss_dssp SCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred ccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence 66563311 1124799999854 567788888888765
No 202
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.92 E-value=3e-24 Score=208.69 Aligned_cols=303 Identities=11% Similarity=0.065 Sum_probs=197.7
Q ss_pred cHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhH--hHHHHhccccccccccCccce
Q 013521 116 NMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYI--DTSVIVGQAGKFLKETGKYRN 193 (441)
Q Consensus 116 ~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~ 193 (441)
..++.+++++.+.+.++.+ +.|++|+|++++++++..++++||+|++.+++|++.. ..+...|.. .+
T Consensus 33 ~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~----------~~ 101 (379)
T 3ke3_A 33 FQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQLTIDEDCLIIRNGWFSYRWTQILEKGKFA----------KS 101 (379)
T ss_dssp HHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHHCTTCEEEEEECSHHHHHHHHHHHHHCCS----------SE
T ss_pred HHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhCCCCCeEEEEeCCchhHHHHHHHHHhCCC----------Cc
Confidence 3455556666555545666 7899999999999986566789999999999998753 233334410 25
Q ss_pred eEEeecCCCC------Cc-cCCCCC------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 194 IVYMNCRPEN------NF-FPDLST------TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 194 v~~v~~~~~~------~~-~~~~~~------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
++.++.+..+ .+ ..+++. .+++++|++++++||||.+++.+++++|.++|++||+++|+|++++ .
T Consensus 102 ~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g- 179 (379)
T 3ke3_A 102 STVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G- 179 (379)
T ss_dssp EEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T-
T ss_pred eEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C-
Confidence 6666654311 11 123221 1378999988999999999999999999999999999999999976 2
Q ss_pred cCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecccccc----CC-chh--HHHHH----HHHhh---hcCC
Q 013521 261 TDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYS----NG-YPV--IKDFN----RIVCT---CFNG 326 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~----~~-~~~--~~~~~----~~~~~---~~~~ 326 (441)
..+..+... +.++++.|++|.++ .+.++|+++++++++.. .. ... ...+. ..... ...+
T Consensus 180 --~~~~~~~~~----~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t 252 (379)
T 3ke3_A 180 --CVWLDMKEL----GIDVLISAPQKGWS-STPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHAT 252 (379)
T ss_dssp --TCCCCHHHH----TCSEEEECTTTTTC-SCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSC
T ss_pred --Ccccccccc----CCCEEEecchhhcC-CCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCC
Confidence 223333322 33588999999986 55569999998876311 00 000 00011 11111 0124
Q ss_pred CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCC--ceE-EEEEcCCCChHHHHHHHHHhcCe
Q 013521 327 ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKN--APY-VWVQFPGSSSWDVFAEILEKTHI 403 (441)
Q Consensus 327 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ll~~~gi 403 (441)
.+...+.++.++++......+++++++++++++++.+.|+++|+++..++. +.. ..+..++ ....... .|+++||
T Consensus 253 ~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~-~L~~~Gi 330 (379)
T 3ke3_A 253 MPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTER-DDMHKGS-AFAEAGL 330 (379)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSC-HHHHSSH-HHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCC-cchHHHH-HHHHCCe
Confidence 566666655555541111125788889999999999999998888765432 333 3334332 1122234 4456699
Q ss_pred EEeCCCCcC---CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 404 LTIPGSGFG---PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 404 ~v~pg~~f~---~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.+.+|..+. +...+.||+++ ..+++++++++++|+++
T Consensus 331 ~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~ 372 (379)
T 3ke3_A 331 QIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKA 372 (379)
T ss_dssp CCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHH
T ss_pred EEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHH
Confidence 999998664 23368999997 34789999999998875
No 203
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.92 E-value=2.6e-23 Score=204.40 Aligned_cols=287 Identities=16% Similarity=0.129 Sum_probs=179.0
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHh----HHHHhcccccccc
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYID----TSVIVGQAGKFLK 186 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~~~ 186 (441)
+.+...+|++.+|+++ +.+ ..++++++++|+.+ +..++++||+|+++.|+|.+... .+...|
T Consensus 80 ~~p~~~~le~~lA~l~----g~~--~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G------- 146 (430)
T 3ri6_A 80 SNPTVEDLEQRLKNLT----GAL--GVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFG------- 146 (430)
T ss_dssp CCHHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTT-------
T ss_pred CCHHHHHHHHHHHHHH----CCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcC-------
Confidence 3456788899999886 443 34445555688886 67789999999999999999877 445666
Q ss_pred ccCccceeEEeecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCC
Q 013521 187 ETGKYRNIVYMNCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPS 264 (441)
Q Consensus 187 ~~~~~~~v~~v~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~ 264 (441)
.+++.++.++- .++++ .+++++|++++|+||||.+++ +++|+++|+++|+++|+|++|.......
T Consensus 147 -----~~~~~v~~~d~----~~l~~ai~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~- 213 (430)
T 3ri6_A 147 -----IEVRFVDVMDS----LAVEHACDETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLE- 213 (430)
T ss_dssp -----CEEEEECTTCH----HHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCC-
T ss_pred -----CEEEEeCCCCH----HHHHHhhCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 58888877521 11221 358999999999999999998 7889999999999999999998533211
Q ss_pred CCcccccCCCcceeEEEecCCcccCCccceeEEEEe-ecc--cccc-CCch---------hHHHHH-HHHhhhcCCCcHH
Q 013521 265 PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV-PEE--LRYS-NGYP---------VIKDFN-RIVCTCFNGASNI 330 (441)
Q Consensus 265 ~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~-~~~--~~~~-~~~~---------~~~~~~-~~~~~~~~~~~~~ 330 (441)
+ ... +.++++.|+||.++.+|..+|.+++ +.+ +... +... ++.... ..........++.
T Consensus 214 ~---~~~----g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~ 286 (430)
T 3ri6_A 214 A---KRL----GVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPH 286 (430)
T ss_dssp G---GGG----TCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHH
T ss_pred h---HHc----CCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHH
Confidence 1 111 2358999999999866655555554 222 1100 0000 011111 1112222223333
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCe-eeCCC----------------CceEEEEEcCCCCh-H
Q 013521 331 VQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLK-VNGGK----------------NAPYVWVQFPGSSS-W 391 (441)
Q Consensus 331 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~~~-~ 391 (441)
.... .+ .+.+.+..+.++..++++.+.+.|+++ +++ +..|. +|+.+|+++++... .
T Consensus 287 ~a~l---~l--~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~ 361 (430)
T 3ri6_A 287 NAYL---QS--LGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASY 361 (430)
T ss_dssp HHHH---HH--HHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHH
T ss_pred HHHH---HH--hhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHH
Confidence 3221 12 234555666777788999999999887 554 33222 33489999973111 2
Q ss_pred HHHHHHHHhcCeEEeCCCCcCC---------------------CCCCeEEEEeecCHHHHHHHHHHHHh
Q 013521 392 DVFAEILEKTHILTIPGSGFGP---------------------GGNEHIRVSAFGHREYISEACRRLKN 439 (441)
Q Consensus 392 ~~~~~ll~~~gi~v~pg~~f~~---------------------~~~~~iRls~~~~~~~~~~~l~~l~~ 439 (441)
.++.. ++..++.+.+|..|.. ..+++||||++. |+.+++++.|++
T Consensus 362 ~~~~~-l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~--E~~~dl~~dl~~ 427 (430)
T 3ri6_A 362 RFMDA-LKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI--EEIEDLKEDILQ 427 (430)
T ss_dssp HHHHH-CSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS--SCHHHHHHHHHH
T ss_pred HHHHh-CCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHH
Confidence 22222 3334667778876641 246899999864 333334444443
No 204
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.91 E-value=3.2e-24 Score=213.46 Aligned_cols=292 Identities=15% Similarity=0.122 Sum_probs=194.9
Q ss_pred cHHHHHHHHHHHhhhCCCCCCcEEEcCCcH-HHHHH-HHHhcC--CCCEEEEeCCCchhhHhHHHHhccccccccccCcc
Q 013521 116 NMALRTAIADKFYKDMGIEGDEIFISDGAQ-SDISR-LQMLLG--SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKY 191 (441)
Q Consensus 116 ~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~-~al~~-l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 191 (441)
..++.+++.+++.+.+|++++ +++|+|++ .++.+ +..+.. +|+.|++++++|+++...++..|
T Consensus 131 ~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G------------ 197 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVG------------ 197 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcC------------
Confidence 455666666666666688776 99999999 45443 433322 67889999999999998888888
Q ss_pred ceeEEeecCC-CCCccCCCCC----------CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 192 RNIVYMNCRP-ENNFFPDLST----------TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 192 ~~v~~v~~~~-~~~~~~~~~~----------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
.+++.++..+ +.++..|++. ..++.+|++++|+||||.+.+ +++|.++|+++|+++++|++|+.+.
T Consensus 198 ~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~ 274 (456)
T 2z67_A 198 MNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQN 274 (456)
T ss_dssp CEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred CCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHH
Confidence 5777777631 1223333221 136677778899999999988 8899999999999999999998654
Q ss_pred cCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEee-ccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhc
Q 013521 261 TDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVP-EELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL 339 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 339 (441)
.+..+.....+.+ +..+++.|++|.++ ++.++||++++ +++ .+.+...........+.+.+.+++..+
T Consensus 275 ~g~~~~~~~~~~~--~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~--------~~~l~~~~~g~~~~~~~~~~~aal~~l 343 (456)
T 2z67_A 275 NYYLEKLKKAFKY--RVDAVVSSSDKNLL-TPIGGGLVYSTDAEF--------IKEISLSYPGRASATPVVNTLVSLLSM 343 (456)
T ss_dssp HHHHHHHHHHHTS--CCSEEEEEHHHHHC-CCSSCEEEEESCHHH--------HHHHHTTSCSCBCSHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhhCC--CCCEEEEcCCCCcC-CCCCeEEEEEcCHHH--------HhhcCcCCCCCCCCCHHHHHHHHHHHH
Confidence 3211111111221 22378899999875 67899999995 444 233321111111112234444444444
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEc--CCCChHHHHHHHHHhcCe---EEe----
Q 013521 340 SPDGFQALRTVIDYYKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQF--PGSSSWDVFAEILEKTHI---LTI---- 406 (441)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~gi---~v~---- 406 (441)
. ...++++.++.+++++++.+.|++. |+.+.+++ +++++.+ ++. ..++...|.++ || .+.
T Consensus 344 ~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~--~~v~~~~~~~~~-~~~l~~~L~~~-gi~~~rv~~~~g 416 (456)
T 2z67_A 344 G---SKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE--SPIASCISVNSD-PVEIAAKLYNL-RVTGPRGIKKTD 416 (456)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--CSSEEEEECSSC-HHHHHHHHHHT-TEESCEEECTTC
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC--CeEEEEEecccH-HHHHHHHHHHc-CCCcceEEeecC
Confidence 2 3456888899999999999999887 87776654 6677777 432 35677776655 65 443
Q ss_pred --CCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 407 --PGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 407 --pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
+|..|.....+++|+++. .+++++++++++|++++
T Consensus 417 ~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 417 HFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 234443334579999974 58999999999998864
No 205
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.91 E-value=5.1e-22 Score=196.68 Aligned_cols=314 Identities=16% Similarity=0.107 Sum_probs=207.8
Q ss_pred CCeEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-
Q 013521 72 ARLIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR- 150 (441)
Q Consensus 72 ~~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~- 150 (441)
+++|.|+..+ .++.+.+++.+++... .|.+..+..++|+++|+++ +.+ ++++++++++++.+
T Consensus 31 ~~~i~~~~~~----~~~~~~~a~~~~~~~~-------~~~~~~~~~~l~~~la~~~----g~~--~~i~~~sGt~a~~~a 93 (437)
T 3bb8_A 31 KSVVPPSGKV----IGTKELQLMVEASLDG-------WLTTGRFNDAFEKKLGEYL----GVP--YVLTTTSGSSANLLA 93 (437)
T ss_dssp TSCBCSCCCC----CCHHHHHHHHHHHHHC-------CCBSCHHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHH
T ss_pred CccccCCCCC----CCHHHHHHHHHHHHcC-------CcCCChHHHHHHHHHHHHH----CCC--cEEEeCCHHHHHHHH
Confidence 4467775443 3467888888887641 2556678999999999997 544 66777777788887
Q ss_pred HHHh---------cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCcc
Q 013521 151 LQML---------LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTD 216 (441)
Q Consensus 151 l~~l---------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~ 216 (441)
+..+ +++||+|+++.|+|+++...+...| .+++.++++++ ++..|++. .++++
T Consensus 94 l~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~~g------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~ 160 (437)
T 3bb8_A 94 LTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNG------------LIPVFVDVDIP-TYNVNASLIEAAVSDKTK 160 (437)
T ss_dssp HHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHTT------------CEEEECCEETT-TTEECGGGHHHHCCTTEE
T ss_pred HHHhhhcccccccCCCcCEEEECCCCcHHHHHHHHHcC------------CEEEEEeccCc-cCCcCHHHHHHhcCCCCe
Confidence 5666 7899999999999999999998888 58888888752 23333332 35789
Q ss_pred EEEEcC-CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcccee
Q 013521 217 IIFFCS-PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRL 295 (441)
Q Consensus 217 ~v~i~~-p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~ 295 (441)
+|++++ |+|| .+ +++|.++|+++|+++|+|++|+...... ... +....+ +.+.||+|..+++|.|.
T Consensus 161 ~v~~~~~~g~~----~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~-~~~---~~~~~d--~~~~s~~~~k~l~~g~g 227 (437)
T 3bb8_A 161 AIMIAHTLGNL----FD---LAEVRRVADKYNLWLIEDCCDALGSTYD-GKM---AGTFGD--IGTVSFYPAKHITMGEG 227 (437)
T ss_dssp EEEEECGGGCC----CC---HHHHHHHHHHHTCEEEEECTTCTTCEET-TEE---TTSSSS--EEEEECSTTSSSCCSSC
T ss_pred EEEEeCCCCCh----hc---HHHHHHHHHHcCCEEEEECccccCceEC-Cee---cccccC--EEEEECcCCcCCCCCCe
Confidence 999974 5555 45 8899999999999999999998432211 111 111123 77889988888899999
Q ss_pred EEEEeeccccccCCchhHHHHHHHHhhh--------------------------------------c-CCCcHHHHHHHH
Q 013521 296 GWTVVPEELRYSNGYPVIKDFNRIVCTC--------------------------------------F-NGASNIVQAGGL 336 (441)
Q Consensus 296 G~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~-~~~~~~~~~a~~ 336 (441)
||++++++.+ .+.+....... + ...+.+...++.
T Consensus 228 g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l 300 (437)
T 3bb8_A 228 GAVFTQSAEL-------KSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGL 300 (437)
T ss_dssp EEEEESCHHH-------HHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHH
T ss_pred EEEEeCCHHH-------HHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHH
Confidence 9999987653 11111111000 0 012345554445
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCC------C-ceEEE-EEcC-CCChHHHHHHHHHhcCeEEe
Q 013521 337 ACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGK------N-APYVW-VQFP-GSSSWDVFAEILEKTHILTI 406 (441)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~------~-~~~~~-~~~~-~~~~~~~~~~ll~~~gi~v~ 406 (441)
+.++ .++...++.+++.+++.+.|+++ |+...+.. + ..|++ ++.+ +.+..++...|.+ +||.++
T Consensus 301 ~~l~-----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~GI~v~ 374 (437)
T 3bb8_A 301 AQLE-----RIEEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDE-AKVGTR 374 (437)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHHH-TTBCCB
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHHH-CCCcee
Confidence 4442 22444555577788899999887 66554311 1 12333 5544 3456677777665 599999
Q ss_pred CCCC--cC--CC----C--------------CCeEEEEee--cCHHHHHHHHHHHHhhC
Q 013521 407 PGSG--FG--PG----G--------------NEHIRVSAF--GHREYISEACRRLKNFL 441 (441)
Q Consensus 407 pg~~--f~--~~----~--------------~~~iRls~~--~~~~~~~~~l~~l~~~l 441 (441)
++.. +. +. + .+.|||++. .++++++++++.|++++
T Consensus 375 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~ 433 (437)
T 3bb8_A 375 LLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFF 433 (437)
T ss_dssp CCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHT
T ss_pred ccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 8754 11 10 0 124999973 38999999999998764
No 206
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.91 E-value=7e-23 Score=198.64 Aligned_cols=313 Identities=15% Similarity=0.131 Sum_probs=207.8
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHH-HHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHh
Q 013521 77 LGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAI-ADKFYKDMGIEGDEIFISDGAQSDISR-LQML 154 (441)
Q Consensus 77 l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i-a~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l 154 (441)
...+.|++++++.+.+++.+.+.. ..+..| .....++++++ |+++ + ..+++++++|+++++.+ +..+
T Consensus 5 i~~~~p~~~~~~~i~~a~~~~~~~----~~~~~~--~~~~~~l~~~~~a~~~----g-~~~~~v~~~sgt~al~~al~~l 73 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELKEIDAS----HIYTNY--GPINQRFEQTIMSGFF----Q-NRGAVTTVANATLGLMAAIQLK 73 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHHHHHHH----TCCSSS--CHHHHHHHHHHHHHTS----T-TCSEEEEESCHHHHHHHHHHHH
T ss_pred eeccCCCCCCcHHHHHHHHHHHHc----CCcccC--CHHHHHHHHHHHHHHh----C-CCCeEEEeCCHHHHHHHHHHHc
Confidence 445688899999999999998874 222223 34578999999 9985 4 35788999999999987 6676
Q ss_pred -cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC------CCC--ccEEEEcCCCC
Q 013521 155 -LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSR--TDIIFFCSPNN 225 (441)
Q Consensus 155 -~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~--~~~v~i~~p~N 225 (441)
+++||+|+++.|+|+++...+...| .+++.++++++ ++..|++. .++ +++|+ |+|
T Consensus 74 ~~~~Gd~Vi~~~~~~~~~~~~~~~~G------------~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~tk~v~---~~~ 137 (377)
T 3ju7_A 74 KRKKGKYALMPSFTFPATPLAAIWCG------------LEPYFIDISID-DWYMDKTVLWDKIEELKEEVAIVV---PYA 137 (377)
T ss_dssp SCTTCCEEEEESSSCTHHHHHHHHTT------------CEEEEECBCTT-TCSBCHHHHHHHHHHHGGGEEEEC---CBC
T ss_pred CCCCcCEEEECCCCcHHHHHHHHHcC------------CEEEEEecCCc-cCCcCHHHHHHHHhcCCCCceEEE---EEC
Confidence 8999999999999999999999888 58999998753 44444332 234 77766 678
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcc-cccCCCcceeEEEec--CCcccCCccceeEEEEeec
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSI-YEIPGAREVAIEISS--FSKFAGFTGVRLGWTVVPE 302 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~-~~~~~~~~~~i~i~S--~SK~~~~~G~r~G~l~~~~ 302 (441)
|||...+ +++|.++|+ ||++||+|++|+...... ..++ ..+ .+ +.+.| .+|.++ +| +.|++++++
T Consensus 138 ~~G~~~~---~~~i~~la~-~~~~vi~D~a~a~g~~~~-~~~~g~~~---~d--~~~~S~~~~K~l~-~g-~gG~~~~~~ 205 (377)
T 3ju7_A 138 TFGSWMN---LEEYEELEK-KGVPVVVDAAPGFGLMNG-GMHYGQDF---SG--MIIYSFHATKPFG-IG-EGGLIYSKN 205 (377)
T ss_dssp GGGBCCC---CHHHHHHHH-TTCCBEEECTTCTTCEET-TEETTTTC---SS--EEEEECBTTSSSC-CB-SCEEEEESC
T ss_pred CCCCccC---HHHHHHHHh-cCCEEEEECCCccCCeEC-CEeccCCC---Cc--EEEEECCCCCcCC-CC-CcEEEEECC
Confidence 9999988 778888899 999999999998532211 1111 111 23 44555 469998 45 678888876
Q ss_pred cccccCCchhHHHHHHHHhhh------------cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC-
Q 013521 303 ELRYSNGYPVIKDFNRIVCTC------------FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG- 369 (441)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g- 369 (441)
+.+ .+++..++... ....+.+....+...+ +.++...++.+++++.+.+.|++++
T Consensus 206 ~~l-------~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l-----~~l~~~~~~~~~~~~~~~~~L~~~~~ 273 (377)
T 3ju7_A 206 EED-------IQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATM-----KKWDDKLKERTRISEWYKQLLQSNGL 273 (377)
T ss_dssp HHH-------HHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHH-----HTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHH-------HHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 553 44555444321 1224444433333333 3346666777778888888888773
Q ss_pred --CeeeCCCC--c--eEEEEEcCCCC-hHHHHHHHHHhcCeEEeCCC--CcCC--------C---------CCCeEEEEe
Q 013521 370 --LKVNGGKN--A--PYVWVQFPGSS-SWDVFAEILEKTHILTIPGS--GFGP--------G---------GNEHIRVSA 423 (441)
Q Consensus 370 --~~~~~~~~--~--~~~~~~~~~~~-~~~~~~~ll~~~gi~v~pg~--~f~~--------~---------~~~~iRls~ 423 (441)
+.+.+... . .|+.+.++... .+++.+.| +++||.++.+. .+.. . ..+.|||.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~ 352 (377)
T 3ju7_A 274 MKKGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDL-KKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPL 352 (377)
T ss_dssp TTTTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHH-HTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECC
T ss_pred ccccccCCCCCcceEEEEEEEeCChhhHHHHHHHH-HHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCC
Confidence 22322111 1 23456666322 45555555 55699998775 2210 0 025699997
Q ss_pred ec--CHHHHHHHHHHHHhhC
Q 013521 424 FG--HREYISEACRRLKNFL 441 (441)
Q Consensus 424 ~~--~~~~~~~~l~~l~~~l 441 (441)
.. ++++++..++.|++++
T Consensus 353 ~~~~t~~di~~v~~~l~~~~ 372 (377)
T 3ju7_A 353 WEGMTKEIVEQIVICLGQKV 372 (377)
T ss_dssp CTTCCHHHHHHHHHHHTC--
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 43 7899999999998764
No 207
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.91 E-value=2.5e-23 Score=208.96 Aligned_cols=322 Identities=10% Similarity=-0.010 Sum_probs=212.6
Q ss_pred CcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC---------CcEEEcCCcHHHHHH-HHHhc
Q 013521 86 IPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG---------DEIFISDGAQSDISR-LQMLL 155 (441)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~---------~~I~~t~G~~~al~~-l~~l~ 155 (441)
++..+.+++...+. .....|....+..++++++++|+.+.+|.+. .++++|+|+++++.+ +..+.
T Consensus 86 ~~~~~~~~~~~~~n-----~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~ 160 (486)
T 1js3_A 86 YPAMLADMLCGAIG-----CIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (486)
T ss_dssp HHHHHHHHHHHHHC-----CCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-----cCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHH
Confidence 34556677777663 3345676666788999999999988667654 468999999999876 44332
Q ss_pred C---C------CC----------EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----
Q 013521 156 G---S------NV----------TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST----- 211 (441)
Q Consensus 156 ~---~------gd----------~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~----- 211 (441)
+ + || .|+++.++|+++...++..| ++++.+|++. ++..|++.
T Consensus 161 ~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G------------~~v~~v~~d~--~~~~d~~~L~~~i 226 (486)
T 1js3_A 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGG------------VKLKAIPSDG--KFAMRASALQEAL 226 (486)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHT------------CEEEEECCCT--TSCCCHHHHHHHH
T ss_pred HHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCC------------CceEEeecCC--CCCCCHHHHHHHH
Confidence 1 1 32 37889999999999999999 5899999864 33344322
Q ss_pred CCCc------cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcc-cccCCCcceeEEEec
Q 013521 212 TSRT------DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSI-YEIPGAREVAIEISS 283 (441)
Q Consensus 212 ~~~~------~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~-~~~~~~~~~~i~i~S 283 (441)
.+++ .+|++++|+||||.+-+ +++|+++|++||+++++|++|+.+.... ..... ..+ .+..++..|
T Consensus 227 ~~~~~~g~~p~~vv~~~~~n~tG~~~~---l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~---~~adsi~~~ 300 (486)
T 1js3_A 227 ERDKAAGLIPFFVVATLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGV---EFADSFNFN 300 (486)
T ss_dssp HHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTG---GGCSEEEEC
T ss_pred HHHHhCCCCceEEEEeCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCc---cccCeeEEc
Confidence 1222 38888899999998866 9999999999999999999999755421 11111 112 122356678
Q ss_pred CCcccCCccceeEEEEeecccc-ccCCchhHHHHHHHHhh--------------hcCCCcHHHHHHHHHhcCCCcHHHHH
Q 013521 284 FSKFAGFTGVRLGWTVVPEELR-YSNGYPVIKDFNRIVCT--------------CFNGASNIVQAGGLACLSPDGFQALR 348 (441)
Q Consensus 284 ~SK~~~~~G~r~G~l~~~~~~~-~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~a~~~~l~~~~~~~~~ 348 (441)
++|+++. .+++||++++++.. .... .....+...... .......+.+.+++..+ +.+.++
T Consensus 301 ~hK~~~~-p~~~G~l~~~~~~~l~~~~-~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~---g~~g~~ 375 (486)
T 1js3_A 301 PHKWLLV-NFDCSAMWVKRRTDLTGAF-KLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY---GVKGLQ 375 (486)
T ss_dssp HHHHSSC-CSSCEEEEESCHHHHHGGG-C------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH---HHHHHH
T ss_pred hhhhcCC-CcceEEEEEeCHHHHHHHh-cCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHH---hHHHHH
Confidence 9999985 48999999976532 1100 000000000000 00012344555555444 345678
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcCCCC--hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee-
Q 013521 349 TVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGSS--SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF- 424 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~- 424 (441)
++.++..++++++.+.|++. |+++..++...++.+.+++.+ ..++.+.+.++ |+.+.++..|. +.+++|+++.
T Consensus 376 ~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~--~~~~lRi~~~~ 452 (486)
T 1js3_A 376 AYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSA-RKIHLVPCRLR--GQFVLRFAICS 452 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHH-TSCBCEEEEET--TEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecChHHHHHHHHHHHHhc-CCEEEEEEEEC--CEEEEEEEeCC
Confidence 88899999999999999987 888865445566666775321 45677777666 65543333332 3679999973
Q ss_pred --cCHHHHHHHHHHHHhh
Q 013521 425 --GHREYISEACRRLKNF 440 (441)
Q Consensus 425 --~~~~~~~~~l~~l~~~ 440 (441)
.+++++++++++|+++
T Consensus 453 ~~~t~~di~~~~~~l~~~ 470 (486)
T 1js3_A 453 RKVESGHVRLAWEHIRGL 470 (486)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 3688999999999875
No 208
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.91 E-value=5.9e-23 Score=206.70 Aligned_cols=329 Identities=10% Similarity=0.107 Sum_probs=214.5
Q ss_pred CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcHHHHHH-HHH----hc---
Q 013521 85 PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG-DEIFISDGAQSDISR-LQM----LL--- 155 (441)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~al~~-l~~----l~--- 155 (441)
+.++.+.+++.....+ .....|.......++.+++.+|+.+.++.++ +++++|+|+++++.+ +.. ++
T Consensus 111 ~~~~~v~~~~~~~~~n----~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~ 186 (497)
T 2qma_A 111 PLMPAVAAEAMIAALN----QSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKL 186 (497)
T ss_dssp CBHHHHHHHHHHHHHC----CCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhc----ccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhh
Confidence 4567777777665443 2334465555778888888888877677765 899999999999886 443 23
Q ss_pred ------CC------CC-EEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----C----C
Q 013521 156 ------GS------NV-TVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----T----S 213 (441)
Q Consensus 156 ------~~------gd-~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~----~ 213 (441)
.+ |+ .|+++.++|.++...+..+|. |. .+++.+|.+.+. ..|++. . .
T Consensus 187 ~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~-g~--------~~v~~v~~~~~~--~~d~~~L~~~i~~~~~~ 255 (497)
T 2qma_A 187 SGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGL-GE--------KAVMTVDANADG--TMDITKLDEVIAQAKAE 255 (497)
T ss_dssp HCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTS-CG--------GGEEEECBCTTS--SBCGGGHHHHHHHHHHT
T ss_pred cccchhhcccccccCCeEEEECCCchHHHHHHHHHcCC-Cc--------ccEEEEecCCCC--cCCHHHHHHHHHHHHHC
Confidence 12 46 899999999999988888873 10 168888886533 333332 1 1
Q ss_pred Ccc--EEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCc
Q 013521 214 RTD--IIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFT 291 (441)
Q Consensus 214 ~~~--~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~ 291 (441)
+++ +|++++++||||.+.+ +++|+++|++||+++++|++|+.+........ .+.+.....+++.|++|+++.
T Consensus 256 ~~~~~~vv~~~~~~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~--~~~gi~~~D~i~~s~hK~l~~- 329 (497)
T 2qma_A 256 GLIPFAIVGTAGTTDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSSHKS--RLKGVERAHSISVDFHKLFYQ- 329 (497)
T ss_dssp TCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGSTTGG--GGTTGGGCSEEEEETTTTTCC-
T ss_pred CCcceEEEEcCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCcchH--hhcCcccCCEEEEcchhccCC-
Confidence 233 7788899999999888 88999999999999999999997655322111 122222334778899999874
Q ss_pred cceeEEEEeeccccccCCchhHHHHHHHHh----hhcC------CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 292 GVRLGWTVVPEELRYSNGYPVIKDFNRIVC----TCFN------GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 292 G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
+.++|+++++++............+..... .... ....+.+.+++..+. .+.++++.++..++++++
T Consensus 330 p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg---~~g~~~~~~~~~~~a~~l 406 (497)
T 2qma_A 330 TISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVG---PKALGDMYDHLLAQTLEV 406 (497)
T ss_dssp CSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHH
Confidence 479999998766521100000000000000 0000 001233333444443 455678888889999999
Q ss_pred HHHHHhC-CCeeeCCCCceEEEEEcCCCC------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEe---ecCHHHHH
Q 013521 362 VDAFQSL-GLKVNGGKNAPYVWVQFPGSS------SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSA---FGHREYIS 431 (441)
Q Consensus 362 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~---~~~~~~~~ 431 (441)
.+.|++. ++++..++.+.++++++.+.. ..++...+.++ |+.+.++..+. +.+++|+++ ..++++++
T Consensus 407 ~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~-G~~~~~~~~~~--g~~~lRis~~~~~~t~edi~ 483 (497)
T 2qma_A 407 ADMIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTR-GIAVLGETIVD--GKTALKFTILNPCLTTSDFE 483 (497)
T ss_dssp HHHHHTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHH-TSCBCEEEEET--TEEEEEEECCCTTCCHHHHH
T ss_pred HHHHhhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhC-CCEEEEeeEEC--CEEEEEEEecCCCCCHHHHH
Confidence 9999987 888755456678888886321 12344555554 98887654442 356899997 35899999
Q ss_pred HHHHHHHhh
Q 013521 432 EACRRLKNF 440 (441)
Q Consensus 432 ~~l~~l~~~ 440 (441)
+++++|+++
T Consensus 484 ~~~~~l~~~ 492 (497)
T 2qma_A 484 SLLSKINML 492 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 209
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.91 E-value=1.5e-22 Score=203.96 Aligned_cols=323 Identities=9% Similarity=0.056 Sum_probs=213.5
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCC--CCcEEEcCCcHHHHHH-HHHhcC-------
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIE--GDEIFISDGAQSDISR-LQMLLG------- 156 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~--~~~I~~t~G~~~al~~-l~~l~~------- 156 (441)
+..+.+.+..++. .....|....+..++++++++|+.+.+|.+ ++.+++|+|+++++.. +..+.+
T Consensus 109 ~~~~~e~l~~~~~-----~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 183 (511)
T 3vp6_A 109 IGLAGEWLTSTAN-----TNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVK 183 (511)
T ss_dssp HHHHHHHHHHHHC-----CCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhc-----cCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhh
Confidence 3444566666664 445578778899999999999998866665 5799999999999875 444432
Q ss_pred -------CCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--------CCCccEEEE
Q 013521 157 -------SNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--------TSRTDIIFF 220 (441)
Q Consensus 157 -------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--------~~~~~~v~i 220 (441)
+++.|+++.++|+++...++.+|... .+++.++.+.++.++++ +++ ...+++|++
T Consensus 184 ~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~---------~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~ 254 (511)
T 3vp6_A 184 TKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGT---------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNA 254 (511)
T ss_dssp HHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hcCcccCCCeEEEECCCchHHHHHHHHHcCCCC---------CcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 57799999999999999999988310 17888888754332222 221 122788999
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
++|+||||.+-+ +++|+++|++||+++++|++|+......... -..+.+.....+++.+++|+++ ....+|++++
T Consensus 255 ~~~~~~~G~vd~---l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~-~~~~~g~~~aDsv~~~~hK~l~-~p~g~g~l~~ 329 (511)
T 3vp6_A 255 TAGTTVYGAFDP---IQEIADICEKYNLWLHVDAAWGGGLLMSRKH-RHKLNGIERANSVTWNPHKMMG-VLLQCSAILV 329 (511)
T ss_dssp EBSCSSSCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTT-GGGGTTGGGCSEEEECTTSTTC-CCSCCEEEEE
T ss_pred ecCCCCCccccc---HHHHHHHHHHcCCEEEEEccchhhHhhChhh-hhhccCCccCCEEEECcccccC-CCcCeEEEEE
Confidence 999999999977 8999999999999999999998654422110 0111222223477889999997 4478999988
Q ss_pred eccccccCCchhHHHHHHHH-hh-----------------hcC---CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 013521 301 PEELRYSNGYPVIKDFNRIV-CT-----------------CFN---GASNIVQAGGLACLSPDGFQALRTVIDYYKENAK 359 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 359 (441)
+++.+ ........ .. ... ....+...+++..+ +.+++++++++..++.+
T Consensus 330 ~~~~~-------~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~---g~~gl~~~~~~~~~~a~ 399 (511)
T 3vp6_A 330 KEKGI-------LQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK---GTVGFENQINKCLELAE 399 (511)
T ss_dssp SSTTH-------HHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred eCHHH-------HHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHH---hHHHHHHHHHHHHHHHH
Confidence 76542 11110000 00 000 01233334444443 34667889999999999
Q ss_pred HHHHHHHhC-CCeeeC--CCCceEEEEEc-CC-CC---------------hHHHHHHHHHhcCeEEeCCCCcCCCCCCeE
Q 013521 360 IIVDAFQSL-GLKVNG--GKNAPYVWVQF-PG-SS---------------SWDVFAEILEKTHILTIPGSGFGPGGNEHI 419 (441)
Q Consensus 360 ~l~~~L~~~-g~~~~~--~~~~~~~~~~~-~~-~~---------------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~i 419 (441)
++.+.|++. |+++.. ++....+++++ +. .+ ..++.++|.++ |+.+.. ..+...+.+++
T Consensus 400 ~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~-~~~~~~~~~~l 477 (511)
T 3vp6_A 400 YLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVG-YQPQGDKANFF 477 (511)
T ss_dssp HHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEE-EEEETTEEEEE
T ss_pred HHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEE-EEEeCCceEEE
Confidence 999999987 888865 34444455554 21 10 12456666666 754433 11222234589
Q ss_pred EEEee---cCHHHHHHHHHHHHhh
Q 013521 420 RVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 420 Rls~~---~~~~~~~~~l~~l~~~ 440 (441)
|+++. .+.++++.+++.|+++
T Consensus 478 Ri~~~~~~~t~~di~~ll~~i~~~ 501 (511)
T 3vp6_A 478 RMVISNPAATQSDIDFLIEEIERL 501 (511)
T ss_dssp EECCCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 99973 2789999999998764
No 210
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.90 E-value=1e-22 Score=198.63 Aligned_cols=268 Identities=15% Similarity=0.132 Sum_probs=177.5
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHH-----hccccccccc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVI-----VGQAGKFLKE 187 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~-----~g~~~~~~~~ 187 (441)
.+...+|++.+|++. +. ++.++++++++|+.++..++++||+|+++.|+|.+....+.. .|
T Consensus 66 ~p~~~~l~~~la~l~----g~--~~~~~~~sG~~Ai~~~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g-------- 131 (400)
T 3nmy_A 66 NPTRFAYERCVAALE----GG--TRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAG-------- 131 (400)
T ss_dssp CHHHHHHHHHHHHHH----TC--SEEEEESSHHHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHC--------
T ss_pred CHHHHHHHHHHHHHh----CC--CCEEEecCHHHHHHHHHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcC--------
Confidence 445677888888875 43 356666666999988777889999999999999976665443 35
Q ss_pred cCccceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCc
Q 013521 188 TGKYRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRS 267 (441)
Q Consensus 188 ~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~ 267 (441)
.+++.++.++.+.+...+ .+++++|++++|+||||.+++ +++|+++|++||+++|+|++|....... +
T Consensus 132 ----~~~~~v~~~d~~~l~~~i--~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~-~-- 199 (400)
T 3nmy_A 132 ----LDFSFVDLTDPAAFKAAI--RADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR-P-- 199 (400)
T ss_dssp ----CEEEEECTTSHHHHHHHC--CTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC-G--
T ss_pred ----eEEEEECCCCHHHHHHHh--ccCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC-h--
Confidence 478888764211111101 357899999999999999998 8999999999999999999998533221 1
Q ss_pred ccccCCCcceeEEEecCCcccCCccceeEE--EEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHH
Q 013521 268 IYEIPGAREVAIEISSFSKFAGFTGVRLGW--TVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQ 345 (441)
Q Consensus 268 ~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 345 (441)
+ .. +.++++.|+||.++.+|.++|. +++.++.+ .+.+...........+++...++...++.
T Consensus 200 ~-~~----g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~-------~~~l~~~~~~~g~~~~~~~a~~~l~~l~~---- 263 (400)
T 3nmy_A 200 L-SL----GADLVVHSATKYLNGHSDMVGGIAVVGDNAEL-------AEQMAFLQNSIGGVQGPFDSFLALRGLKT---- 263 (400)
T ss_dssp G-GG----TCSEEEEETTTTTTCSSSCCCEEEEECSCHHH-------HHHHHHHHHHHCCBCCHHHHHHHHHHHTT----
T ss_pred h-hc----CCcEEEecCccccCCCCCcceeEEEEeCCHHH-------HHHHHHHHHhcCCCCCHHHHHHHHHhHhH----
Confidence 1 11 3458999999999878788765 44444332 45555555554555666666555555542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCe-eeCC----------------CCceEEEEEcCCCChHHHHHHHHH---hcCeE
Q 013521 346 ALRTVIDYYKENAKIIVDAFQSL-GLK-VNGG----------------KNAPYVWVQFPGSSSWDVFAEILE---KTHIL 404 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~ll~---~~gi~ 404 (441)
+..+.++..++.+.+.+.|+++ .+. +..| ..|..+++++++. .+....+++ ..++.
T Consensus 264 -l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~--~~~~~~~~~~l~~~~~~ 340 (400)
T 3nmy_A 264 -LPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGG--FDAAKRFCEKTELFTLA 340 (400)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH--HHHHHHHHHHCSSSEEC
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCc--HHHHHHHHHcCCcceEe
Confidence 3555677788888899999876 333 2211 1367899999742 222233333 33445
Q ss_pred EeCCCCcC---------------------CCCCCeEEEEeec
Q 013521 405 TIPGSGFG---------------------PGGNEHIRVSAFG 425 (441)
Q Consensus 405 v~pg~~f~---------------------~~~~~~iRls~~~ 425 (441)
+..|..++ .-.++.+|||++.
T Consensus 341 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl 382 (400)
T 3nmy_A 341 ESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI 382 (400)
T ss_dssp SCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS
T ss_pred cCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc
Confidence 55554432 1135789999864
No 211
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.90 E-value=2.3e-22 Score=199.82 Aligned_cols=339 Identities=13% Similarity=0.087 Sum_probs=195.6
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCC---CCCCCcCcHHHHHHHHHHHhhhCCCCCCc---EEEcCCcHHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK---GYGAEQGNMALRTAIADKFYKDMGIEGDE---IFISDGAQSD 147 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~---~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~---I~~t~G~~~a 147 (441)
.+.|-.+++ ++++.+.+++...+.+... .+.. .|+...-..++++...+++.+.+|.+.++ .++++++++|
T Consensus 56 ~i~lias~n--~~~~~V~eA~~~~l~~~y~-~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~A 132 (490)
T 2a7v_A 56 GLELIASEN--FCSRAALEALGSCLNNKYS-EGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPA 132 (490)
T ss_dssp SEECCTTCC--CCCHHHHHHHTSGGGTCCC-CC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred CceEECCCC--CCCHHHHHHHHHHHcCCCc-cCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHH
Confidence 467776443 2689999999987754211 1111 12211122356644444444446887753 3455466777
Q ss_pred HHH-HHHhcCCCCEEEEeCCCchhhHh--------HHHHhccccccccccCccceeEEeecCCCCCccCCCCC------C
Q 013521 148 ISR-LQMLLGSNVTVAVQDPSFPAYID--------TSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------T 212 (441)
Q Consensus 148 l~~-l~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~ 212 (441)
+.+ +.++++|||+|++++|.|.++.. .+...|.. .+++.++++++ ....|+++ .
T Consensus 133 n~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~----------~~~~~~~vd~~-~~~iD~d~le~~l~~ 201 (490)
T 2a7v_A 133 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF----------FESMPYKLNPK-TGLIDYNQLALTARL 201 (490)
T ss_dssp HHHHHHHHCCSCEECCC-----------------------------------------CCBCTT-TCSBCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCe----------EEEEecccccc-cCCcCHHHHHHHHhh
Confidence 776 78899999999999999876432 12223310 23445555543 22344332 1
Q ss_pred CCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccc-ccccCCC-CCcccccCCCcceeEEEecCCcccCC
Q 013521 213 SRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYA-AYITDPS-PRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 213 ~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~-~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
.++++|++++|+||+ ..+ +++|.++|++||+++++|++|. .+...+. +.++ +. ..+++.|+||++
T Consensus 202 ~~~klIi~~~s~~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~---~~---aDiv~~S~hK~l-- 268 (490)
T 2a7v_A 202 FRPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KH---ADIVTTTTHKTL-- 268 (490)
T ss_dssp HCCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG---GT---CSEEEEESSGGG--
T ss_pred cCCcEEEEcCCCCCC--ccc---HHHHHHHHHHcCCEEEEccccccccccCCcCCCCC---CC---CCEEEECCcccC--
Confidence 468998888899986 345 8899999999999999999976 3333332 2222 11 238899999998
Q ss_pred ccceeEEEEeeccccccC-------CchhHHHHHHHHhhhcCC-CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 013521 291 TGVRLGWTVVPEELRYSN-------GYPVIKDFNRIVCTCFNG-ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIV 362 (441)
Q Consensus 291 ~G~r~G~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 362 (441)
.|.|.|++++++++.... ...+.+.+.........+ ++.....+...++........+.+.+++.++++++.
T Consensus 269 ~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~ 348 (490)
T 2a7v_A 269 RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMA 348 (490)
T ss_dssp CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred ccccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 467889999988632000 001134444333222222 232222222323331111234777888999999999
Q ss_pred HHHHhCCCeeeC-CCCceEEEEEcCC--CChHHHHHHHHHhcCeEEeCCCCcC---CCCCCeEEEEe------ecCHHHH
Q 013521 363 DAFQSLGLKVNG-GKNAPYVWVQFPG--SSSWDVFAEILEKTHILTIPGSGFG---PGGNEHIRVSA------FGHREYI 430 (441)
Q Consensus 363 ~~L~~~g~~~~~-~~~~~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~---~~~~~~iRls~------~~~~~~~ 430 (441)
+.|.+.|+++.. ..+.+++|+++.. .+. +.+..+|++.||.+..+..++ +..+..|||+. ..+++++
T Consensus 349 ~~L~~~G~~v~~~~t~t~lv~vdl~~~g~~~-~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~ 427 (490)
T 2a7v_A 349 DALLERGYSLVSGGTDNHLVLVDLRPKGLDG-ARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDF 427 (490)
T ss_dssp HHHHHTTCEEGGGSCSSSEEEEECTTTTCCH-HHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHH
T ss_pred HHHHHcCcEEecCCCCCeEEEEEeCCCCCCH-HHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHH
Confidence 999999998864 3456789999863 234 445666677899998654333 33467899975 2368999
Q ss_pred HHHHHHHHhh
Q 013521 431 SEACRRLKNF 440 (441)
Q Consensus 431 ~~~l~~l~~~ 440 (441)
+++++.|.++
T Consensus 428 ~~~~~~i~~~ 437 (490)
T 2a7v_A 428 RRVVDFIDEG 437 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888765
No 212
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.90 E-value=8.5e-23 Score=205.91 Aligned_cols=305 Identities=10% Similarity=0.036 Sum_probs=204.2
Q ss_pred CCCCCCCcCcHHHHHHHHHHHhhhCCCC--CCcEEEcCCcHHHHHH-HHHhc--------CCC-----C-EEEEeCCCch
Q 013521 107 YKGYGAEQGNMALRTAIADKFYKDMGIE--GDEIFISDGAQSDISR-LQMLL--------GSN-----V-TVAVQDPSFP 169 (441)
Q Consensus 107 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~--~~~I~~t~G~~~al~~-l~~l~--------~~g-----d-~Vlv~~p~y~ 169 (441)
...|....+..++.+++.+|+.+.++.+ ++++++|+|+++++.+ +..+. ++| + .|+++.++|+
T Consensus 121 ~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~ 200 (504)
T 2okj_A 121 MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHY 200 (504)
T ss_dssp SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT
T ss_pred CCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchH
Confidence 3456666677788888888887766776 7899999999999886 44432 256 6 7899999999
Q ss_pred hhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----------CCCccEEEEcCCCCccccCCCHHHHHH
Q 013521 170 AYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----------TSRTDIIFFCSPNNPTGHAATWQQLKK 238 (441)
Q Consensus 170 ~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----------~~~~~~v~i~~p~NPtG~~~~~~~~~~ 238 (441)
++...+..+|. |. .+++.+|.+.++ ..+++. ..++++|++++|+||||.+.+ +++
T Consensus 201 s~~~~~~~~g~-g~--------~~v~~v~~~~~~--~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~ 266 (504)
T 2okj_A 201 SIKKAGAALGF-GT--------DNVILIKCNERG--KIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQE 266 (504)
T ss_dssp HHHHHHHHTTS-CG--------GGEEEECBCTTS--CBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHH
T ss_pred HHHHHHHHcCC-Cc--------ccEEEEecCCCC--CCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHH
Confidence 99999988873 11 168888886433 333221 115889999999999999988 889
Q ss_pred HHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc-ccccCCchhHHHHH
Q 013521 239 LVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE-LRYSNGYPVIKDFN 317 (441)
Q Consensus 239 i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~-~~~~~~~~~~~~~~ 317 (441)
|+++|++||+++++|++|+.+....... -..+++.....+++.|++|+++.| .++|+++++++ ++ ....
T Consensus 267 I~~la~~~g~~lhvD~a~~~~~~~~~~~-~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~--------~~~~ 336 (504)
T 2okj_A 267 IADICEKYNLWLHVDAAWGGGLLMSRKH-RHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGIL--------QGCN 336 (504)
T ss_dssp HHHHHHHHTCEEEEEETTGGGGGGCTTT-GGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHH--------HHHH
T ss_pred HHHHHHHcCCEEEEehhhhhHHHhCHhh-HhhcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHH--------HHHh
Confidence 9999999999999999999766432110 011222222347788999999844 79999999874 42 1110
Q ss_pred -HHHhhh--------------------cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeC-
Q 013521 318 -RIVCTC--------------------FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNG- 374 (441)
Q Consensus 318 -~~~~~~--------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~- 374 (441)
...... ......+.+.++.+.+. .+.++++.++..++++++.+.|++. ++++..
T Consensus 337 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg---~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 413 (504)
T 2okj_A 337 QMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG---TVGFENQINKCLELAEYLYAKIKNREEFEMVFN 413 (504)
T ss_dssp CCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSS
T ss_pred cCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 000000 00012455555555553 3456788888999999999999987 888764
Q ss_pred --CCCceEEEEEcCCC----------------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee---cCHHHHHHH
Q 013521 375 --GKNAPYVWVQFPGS----------------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF---GHREYISEA 433 (441)
Q Consensus 375 --~~~~~~~~~~~~~~----------------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~---~~~~~~~~~ 433 (441)
+..+++.+...+.. ...++.+.+.++ |+.+..+..+. ...+++|+++. +++++++++
T Consensus 414 ~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~-~~~~~lRis~~~~~~t~edi~~~ 491 (504)
T 2okj_A 414 GEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQG-DKANFFRMVISNPAATQSDIDFL 491 (504)
T ss_dssp SCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEET-TEEEEEEECCCCTTCCHHHHHHH
T ss_pred CCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEEC-CceEEEEEEeCCCCCCHHHHHHH
Confidence 44455544433421 023566666665 75433322232 12368999985 489999999
Q ss_pred HHHHHhh
Q 013521 434 CRRLKNF 440 (441)
Q Consensus 434 l~~l~~~ 440 (441)
+++|+++
T Consensus 492 ~~~l~~~ 498 (504)
T 2okj_A 492 IEEIERL 498 (504)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 213
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.83 E-value=2.8e-25 Score=219.56 Aligned_cols=329 Identities=12% Similarity=0.059 Sum_probs=208.9
Q ss_pred cCCCCCeEEeCCCCCC--C-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCc
Q 013521 68 KHPDARLIRLGIGDTT--Q-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGA 144 (441)
Q Consensus 68 ~~~~~~~i~l~~g~~~--~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~ 144 (441)
+..++++|||..|... + ..+|.+.+++.+.+.+. ....| +.....+|.+.|++++ + ..+.+++++++
T Consensus 96 D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~----~~~~~-~~~~~~~Lae~L~~~~----p-~~~~v~~~nSG 165 (465)
T 2yky_A 96 DVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVG----LNLST-QTENEALFAEAVCDRF----P-SIDLVRFTNSG 165 (465)
Confidence 3346789999888753 2 25788999999987651 12234 4445667777777764 3 46889999999
Q ss_pred HHHHHHHHHh---cCCCCEEEEeCCCchhhHhHHHHhc--cccccccccCccceeEEeecCCCCCccCCCCC-CCCccEE
Q 013521 145 QSDISRLQML---LGSNVTVAVQDPSFPAYIDTSVIVG--QAGKFLKETGKYRNIVYMNCRPENNFFPDLST-TSRTDII 218 (441)
Q Consensus 145 ~~al~~l~~l---~~~gd~Vlv~~p~y~~~~~~~~~~g--~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~~~~~~v 218 (441)
++|+.....+ ...++.|++.+++|++...... .| ..|. . ..+..++.++-+.+...+.+ .+++++|
T Consensus 166 seA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~-sg~~~~g~-~------~~~~~~~~~d~~~l~~~l~~~~~~~aav 237 (465)
T 2yky_A 166 TEANLMALATATAITGRKTVLAFDGGYHGGLLNFA-SGHAPTNA-P------YHVVLGVYNDVEGTADLLKRHGHDCAAI 237 (465)
Confidence 9999874333 2456899999999988654433 22 0010 0 02223332211111111111 1467776
Q ss_pred EEcCCCCccccCC-CHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHAA-TWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
++...+|+||.+. +++.+++|.++|++||+++|+||+|. +... ........ +...-+.||||.+| .|+|+||
T Consensus 238 i~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g-~~~a~~~~----gv~pDi~t~sK~lg-~G~piG~ 310 (465)
T 2yky_A 238 LVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLS-GGGAQEML----GISADLTTLGKYIG-GGMSFGA 310 (465)
Confidence 6543366799655 68899999999999999999999999 6322 11111111 12233568999999 6999999
Q ss_pred EEeeccccccCCchhHHHHHH-----HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC----
Q 013521 298 TVVPEELRYSNGYPVIKDFNR-----IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL---- 368 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 368 (441)
++++++++ +.+.. .......+.+++++.++.+.|+.... +.+.++++++.+++.+.|++.
T Consensus 311 v~~~~~i~--------~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~---~~~~~~~~~~~~~l~~~L~~~~~~~ 379 (465)
T 2yky_A 311 FGGRRDLM--------ERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT---RQAASDLSASGDRFRANLNRIAVEN 379 (465)
Confidence 99999884 33332 12223445788899888888863211 334566666666666666554
Q ss_pred CCeeeCCCCceEEEEEcCC-C-------------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHH
Q 013521 369 GLKVNGGKNAPYVWVQFPG-S-------------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEAC 434 (441)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l 434 (441)
++....+..|.++|+.++. . ....++..+++ +||.+.|+. |.. +++..+++++++++
T Consensus 380 ~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~-~~~-------~s~~~t~edid~~l 450 (465)
T 2yky_A 380 QAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRG-MYA-------LSLEIADAGRDAFA 450 (465)
Confidence 3322233468888888753 1 12356677775 599999975 321 67777899999999
Q ss_pred HHHHhhC
Q 013521 435 RRLKNFL 441 (441)
Q Consensus 435 ~~l~~~l 441 (441)
++|.+++
T Consensus 451 ~~l~~~l 457 (465)
T 2yky_A 451 EALADFI 457 (465)
Confidence 9998764
No 214
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.89 E-value=9.2e-22 Score=193.73 Aligned_cols=286 Identities=14% Similarity=0.114 Sum_probs=181.1
Q ss_pred cCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHH----HHhcccccccccc
Q 013521 114 QGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTS----VIVGQAGKFLKET 188 (441)
Q Consensus 114 ~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~ 188 (441)
....++++++|+++ +.+ +.|++++| ++++.+ +..++++||+|+++.++|++....+ ...|
T Consensus 58 ~~~~~l~~~la~~~----g~~-~~v~~~sG-t~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g--------- 122 (421)
T 2ctz_A 58 PTVDVLEKRLAALE----GGK-AALATASG-HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG--------- 122 (421)
T ss_dssp HHHHHHHHHHHHHH----TCS-EEEEESSH-HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTT---------
T ss_pred hHHHHHHHHHHHHh----CCC-ceEEecCH-HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcC---------
Confidence 34588999999987 443 45666665 888887 6667899999999999999987765 4556
Q ss_pred CccceeEEe-ecCCCCCccCCCCC--CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccc-cccccCCC
Q 013521 189 GKYRNIVYM-NCRPENNFFPDLST--TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAY-AAYITDPS 264 (441)
Q Consensus 189 ~~~~~v~~v-~~~~~~~~~~~~~~--~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~-~~~~~~~~ 264 (441)
.+++.+ +.++. .++++ .+++++|++++|+||||.+++ +++|+++|++||+++|+|++| +. .+...
T Consensus 123 ---~~~~~~~~~~d~----~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~-g~~~~ 191 (421)
T 2ctz_A 123 ---IEVRFTSREERP----EEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMG-GYLLR 191 (421)
T ss_dssp ---CEEEECCTTCCH----HHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGG-GTSCC
T ss_pred ---CEEEEECCCCCH----HHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccc-cccCC
Confidence 477777 65311 11111 358899999999999999999 889999999999999999999 53 22221
Q ss_pred CCcccccCCCcceeEEEecCCcccCCccceeEEEEeec-c--c-------cccC-----Cchh---------HHHHHH-H
Q 013521 265 PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPE-E--L-------RYSN-----GYPV---------IKDFNR-I 319 (441)
Q Consensus 265 ~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~-~--~-------~~~~-----~~~~---------~~~~~~-~ 319 (441)
+ + .. +.++++.|+||.++.+|.|+|++++.+ + + +... .... ....+. .
T Consensus 192 ~--~-~~----~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~ 264 (421)
T 2ctz_A 192 P--L-AW----GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDG 264 (421)
T ss_dssp G--G-GG----TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTH
T ss_pred c--c-cc----CCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHH
Confidence 2 2 12 234899999999998899999998862 1 1 1000 0000 000000 0
Q ss_pred HhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeee--C----------------CCCceE
Q 013521 320 VCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVN--G----------------GKNAPY 380 (441)
Q Consensus 320 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~----------------~~~~~~ 380 (441)
........+++...++...++ .+..+.++..++.+.+.+.|+++ ++... + ...|..
T Consensus 265 ~~~~g~~~~~~~a~~~~~~l~-----~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~i 339 (421)
T 2ctz_A 265 LRDQGQALGPFEAWVVLLGME-----TLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAV 339 (421)
T ss_dssp HHHHCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSE
T ss_pred HHhcCCCCCHHHHHHHHcCcc-----hHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceE
Confidence 011112334444333333333 23445566668889999999887 66543 1 123567
Q ss_pred EEEEcCCCChHHHHHHHHHh---cCeEEeCCCCcC---------------------CCCCCeEEEEeecCHHHHHHHHHH
Q 013521 381 VWVQFPGSSSWDVFAEILEK---THILTIPGSGFG---------------------PGGNEHIRVSAFGHREYISEACRR 436 (441)
Q Consensus 381 ~~~~~~~~~~~~~~~~ll~~---~gi~v~pg~~f~---------------------~~~~~~iRls~~~~~~~~~~~l~~ 436 (441)
+.+.+++. .+....++++ .++.++.|.... ...++.||+|++ .++++++++.
T Consensus 340 vsf~l~~~--~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g--~e~~~~li~~ 415 (421)
T 2ctz_A 340 LTFGLKGG--YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG--LEHVEDLKAE 415 (421)
T ss_dssp EEEEETTH--HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECC--SSCHHHHHHH
T ss_pred EEEEeCCC--HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeC--CCCHHHHHHH
Confidence 88888642 2333444444 344555553221 012589999985 3577777777
Q ss_pred HHhhC
Q 013521 437 LKNFL 441 (441)
Q Consensus 437 l~~~l 441 (441)
|.++|
T Consensus 416 l~~al 420 (421)
T 2ctz_A 416 LKEAL 420 (421)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77764
No 215
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.88 E-value=2.4e-22 Score=200.65 Aligned_cols=339 Identities=9% Similarity=0.018 Sum_probs=209.1
Q ss_pred CCCCeEEeCCCCCC--C-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGDTT--Q-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~~~--~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.+||+..|... + ..++.+.+++.+.+........ ..|+. ....++++++++.+.+..+...++|++++|+++
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~-~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGse 138 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINR-PALGI-LPPENFVEKLRESLLSVAPKGMSQLITMACGSC 138 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCC-CCTTT-SCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHH
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccc-ccccc-ccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchh
Confidence 35679999877542 2 3589999999987643210011 23432 345789999999776644556789999999999
Q ss_pred HHHH-HHHhc--------C-----------------CC---CEEEEeCCCchhhHhHHHHh-ccccccccccCccceeEE
Q 013521 147 DISR-LQMLL--------G-----------------SN---VTVAVQDPSFPAYIDTSVIV-GQAGKFLKETGKYRNIVY 196 (441)
Q Consensus 147 al~~-l~~l~--------~-----------------~g---d~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~v~~ 196 (441)
|+.. +..+. . || +.|++.+++|++....+..+ |.... .........+..
T Consensus 139 A~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~-~~~~~~~~~~~~ 217 (472)
T 1ohv_A 139 SNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAI-HKIDIPSFDWPI 217 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHH-HHTTSCCCCCCE
T ss_pred HHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccc-cccCCCCCCCcc
Confidence 9987 43331 1 45 89999999999976555333 32100 000000001111
Q ss_pred eecCCC-CC------c--------cCCCCC--CC------CccEEEEcCCCCcccc-CCCHHHHHHHHHHHHHcCcEEEE
Q 013521 197 MNCRPE-NN------F--------FPDLST--TS------RTDIIFFCSPNNPTGH-AATWQQLKKLVEFAKANGSIIVY 252 (441)
Q Consensus 197 v~~~~~-~~------~--------~~~~~~--~~------~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~ 252 (441)
++.... .. + ..++++ .. ++++|++...+|+||. ..+++.+++|.++|++||+++|+
T Consensus 218 ~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~ 297 (472)
T 1ohv_A 218 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV 297 (472)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 121100 00 0 011111 12 6777776555888996 56899999999999999999999
Q ss_pred cccccccccCCCCCcccccCCC--cceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHH
Q 013521 253 DSAYAAYITDPSPRSIYEIPGA--REVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNI 330 (441)
Q Consensus 253 De~~~~~~~~~~~~~~~~~~~~--~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (441)
||+|..|...+.......+.-. +| +.||||.+ ++| ||++ ++++. . +.........+.+++
T Consensus 298 DEv~~g~g~~g~~~~~~~~gv~~~~D----i~t~sK~~-l~G---G~~~-~~~~~-~--------~~~~~~~~T~~~~~~ 359 (472)
T 1ohv_A 298 DEVQTGGGSTGKFWAHEHWGLDDPAD----VMTFSKKM-MTG---GFFH-KEEFR-P--------NAPYRIFNTWLGDPS 359 (472)
T ss_dssp ECTTTTTTTTSSSSGGGGGCCSSCCS----EEEECGGG-SSE---EEEE-CGGGS-C--------SSSSSSCCSSSSCHH
T ss_pred eCcccCCCCCCCchhccccCCCCCCC----EEEEcccc-ccC---CccC-chhhc-c--------cccccccCccCccHH
Confidence 9999876554432233222111 22 45899995 345 7776 55442 0 111122233456888
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC--C----CeeeCCCCceEEEEEcCCC-ChHHHHHHHHHhcCe
Q 013521 331 VQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL--G----LKVNGGKNAPYVWVQFPGS-SSWDVFAEILEKTHI 403 (441)
Q Consensus 331 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g----~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi 403 (441)
++.++.++++... + +.+.++++++++++.+.|+++ + +....+ .|.+++++++.. ...+++..+++ +||
T Consensus 360 ~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~-~Gv 434 (472)
T 1ohv_A 360 KNLLLAEVINIIK-R--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG-RGTFCSFDTPDESIRNKLISIARN-KGV 434 (472)
T ss_dssp HHHHHHHHHHHHH-H--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE-ETTEEEEECSSHHHHHHHHHHHHH-TTE
T ss_pred HHHHHHHHHHHHH-h--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC-CceEEEEEeCChhHHHHHHHHHHH-CCe
Confidence 8888888775211 1 335677777777777777654 1 322333 477888888631 24567777776 599
Q ss_pred EEeCCCCcCCCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 404 LTIPGSGFGPGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 404 ~v~pg~~f~~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.+.|+ +.++||+++ ..+++++++++++|+++
T Consensus 435 ~~~~~------g~~~iRi~~~~~~t~e~i~~~~~~l~~~ 467 (472)
T 1ohv_A 435 MLGGC------GDKSIRFRPTLVFRDHHAHLFLNIFSDI 467 (472)
T ss_dssp ECEEE------TTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99885 256899965 56899999999999875
No 216
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=196.88 Aligned_cols=315 Identities=11% Similarity=0.062 Sum_probs=199.4
Q ss_pred CCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhc-------C-CCC------EEEEeCCCchh
Q 013521 106 GYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLL-------G-SNV------TVAVQDPSFPA 170 (441)
Q Consensus 106 ~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~-------~-~gd------~Vlv~~p~y~~ 170 (441)
....|...++..++.+++.+++.+.+|.+++++++|+|+++++.+ +..+. + +|| .|++..++|++
T Consensus 136 ~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s 215 (515)
T 2jis_A 136 SQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYS 215 (515)
T ss_dssp CTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH
T ss_pred CCCchhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHH
Confidence 334566666777777877777777667778899999999999776 43331 2 575 89999999999
Q ss_pred hHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC--------CCCccEEEEcCCCCccccCCCHHHHHHHHH
Q 013521 171 YIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--------TSRTDIIFFCSPNNPTGHAATWQQLKKLVE 241 (441)
Q Consensus 171 ~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--------~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~ 241 (441)
+...+..+|. |. .+++.+|.+.++.++++ +++ ..++++|++++|+||||.+.+ +++|++
T Consensus 216 ~~~~~~~~g~-g~--------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~ 283 (515)
T 2jis_A 216 IQKGAAFLGL-GT--------DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIAD 283 (515)
T ss_dssp HHHHHHHTTS-CG--------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHH
T ss_pred HHHHHHHcCC-CC--------CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHH
Confidence 9999888873 11 17888888653322221 111 124889999999999999988 889999
Q ss_pred HHHHcCcEEEEcccccccccCCC-CCcccccCCCcceeEEEecCCcccCCccceeEEEEeecc--ccccCCchhHHHHHH
Q 013521 242 FAKANGSIIVYDSAYAAYITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEE--LRYSNGYPVIKDFNR 318 (441)
Q Consensus 242 ~a~~~~~~ii~De~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~--~~~~~~~~~~~~~~~ 318 (441)
+|++||+++++|++|+.+..... ... .+.+..+..+++.|++|+++ .+.++|+++++++ ++..........+..
T Consensus 284 la~~~g~~l~vD~a~~~~~~~~~~~~~--~~~g~~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~ 360 (515)
T 2jis_A 284 VCQRHGLWLHVDAAWGGSVLLSQTHRH--LLDGIQRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKRCHGSQASYLFQ 360 (515)
T ss_dssp HHHHHTCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHHHHCC-------
T ss_pred HHHHcCCeEEEehhhhhHHHhChhhHh--hcCCCccCCEEEECcccccC-CCCCeeEEEEeChHHHHHHHhcCCchhccC
Confidence 99999999999999997665321 111 12222233588999999997 4568999999877 421000000000000
Q ss_pred HHh-------hh-c--C---CCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCceEEEEE
Q 013521 319 IVC-------TC-F--N---GASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-GLKVNGGKNAPYVWVQ 384 (441)
Q Consensus 319 ~~~-------~~-~--~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 384 (441)
... .. + . ....+.+.++.+.+. ...++++.++..++++++.+.|++. |+++..++....+.+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg---~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~ 437 (515)
T 2jis_A 361 QDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG---DQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFW 437 (515)
T ss_dssp --CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEE
T ss_pred CcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEE
Confidence 000 00 0 0 011333434444442 3456788888999999999999987 8888654433334443
Q ss_pred c-CC---C--ChH-----------HHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee---cCHHHHHHHHHHHHhh
Q 013521 385 F-PG---S--SSW-----------DVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF---GHREYISEACRRLKNF 440 (441)
Q Consensus 385 ~-~~---~--~~~-----------~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~---~~~~~~~~~l~~l~~~ 440 (441)
. +. . +.. .+...+.++ |+.+...... ....+++|+++. .+++++++++++|+++
T Consensus 438 ~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~-~~~~~~lRis~~~~~~t~edid~~~~~l~~~ 511 (515)
T 2jis_A 438 FVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPH-GTRGNFFRVVVANSALTCADMDFLLNELERL 511 (515)
T ss_dssp ECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEE-TTEEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEE-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3 31 0 111 134445544 7544221100 112468999984 5899999999999875
No 217
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.88 E-value=4.9e-22 Score=194.38 Aligned_cols=258 Identities=14% Similarity=0.099 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHh--hccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEE--cCCcHHHHHH-HHHhcCCCCEEE
Q 013521 88 DIITSAMAEHAF--ALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFI--SDGAQSDISR-LQMLLGSNVTVA 162 (441)
Q Consensus 88 ~~~~~al~~~~~--~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~--t~G~~~al~~-l~~l~~~gd~Vl 162 (441)
+.+++++.++.. ........+.| +..|..+|++.+|+++ +.+.. ++. ++|+++++.+ +..+++|||+|+
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y-~~~~~~~Le~~lA~l~----g~e~a-lv~p~~~sGt~Ai~~al~all~pGD~Vl 119 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGY-GDIGRDSLDAVYARVF----NTESA-LVRPHFVNGTHALGAALFGNLRPGNTML 119 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCT-TCHHHHHHHHHHHHHH----TCSEE-EEETTCCSHHHHHHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCC-CHHHHHHHHHHHHHHh----CCcce-EEeCCCccHHHHHHHHHHHHhCCCCEEE
Confidence 456677766431 11111223345 3457888999999986 55433 442 6777888887 688899999999
Q ss_pred EeC-CCchhhHhHH-----------HHhccccccccccCccceeEEeecCCCCCccCC-CCC--C--CCccEEEEcC---
Q 013521 163 VQD-PSFPAYIDTS-----------VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T--SRTDIIFFCS--- 222 (441)
Q Consensus 163 v~~-p~y~~~~~~~-----------~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~--~~~~~v~i~~--- 222 (441)
+++ |.|+++...+ ...| .+++.++.++++.++++ +++ . +++++|++++
T Consensus 120 ~~~~~~y~~~~~~~g~~~~~~~~~l~~~G------------~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~ 187 (427)
T 3i16_A 120 SVCGEPYDTLHDVIGITENSNMGSLKEFG------------INYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTG 187 (427)
T ss_dssp ESSSSCCGGGHHHHTCSCCCSSCCTGGGT------------CEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCC
T ss_pred EeCCCccHHHHHHHhccccchHHHHHHcC------------CEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCC
Confidence 999 9999887444 3334 48888888654333222 111 2 6899999998
Q ss_pred -CCCccccCCCHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc-ceeEEE
Q 013521 223 -PNNPTGHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG-VRLGWT 298 (441)
Q Consensus 223 -p~NPtG~~~~~~~~~~i~~~a~~--~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l 298 (441)
|+||||.+ .++++|+++|++ +|+++|+|++|..+.+...|. .. +.+++++|+||.+|.+| .+.||+
T Consensus 188 ~p~nptg~i---~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~---~~----gaDiv~~S~sK~lgg~g~~~gG~i 257 (427)
T 3i16_A 188 YGWRRALLI---EDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT---DV----GADLIAGSLIKNIGGGIAPTGGYL 257 (427)
T ss_dssp SSSSCCCCH---HHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG---GG----TCSEEEEETTSGGGTTTCCSCEEE
T ss_pred CCCCCcccH---HHHHHHHHHHHHhCCCCEEEEECCCccccccCCcc---cc----CCeEEEecCcccCCCCCCceEEEE
Confidence 88998765 569999999999 999999999999766432222 11 23499999999998544 667999
Q ss_pred EeeccccccCCchhHHHHHHHHhhhcCC--CcH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013521 299 VVPEELRYSNGYPVIKDFNRIVCTCFNG--ASN-IVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG 375 (441)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 375 (441)
++++++ ++.+.........+ .++ +. ++..++ .+...+..+.++..+++..+.+.|+++|+++++.
T Consensus 258 ~~~~~l--------i~~l~~~~~~~~~g~~~~~~~~--~a~~~l--~gl~~~~~r~~~~~~~a~~la~~L~~~g~~V~p~ 325 (427)
T 3i16_A 258 AGTKDC--------IEKTSYRLTVPGIGGECGSTFG--VVRSMY--QGLFLAPHISMEALKGAILCSRIMELAGFEVMPK 325 (427)
T ss_dssp EECHHH--------HHHHHHHHSCTTTGGGCCCCTT--CHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEESC
T ss_pred EECHHH--------HHHHHHhcccCccCccCCccHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecCC
Confidence 999887 35554432211111 111 11 011122 2234456778889999999999999999888653
Q ss_pred CCce-----EEEEEcC
Q 013521 376 KNAP-----YVWVQFP 386 (441)
Q Consensus 376 ~~~~-----~~~~~~~ 386 (441)
.+. .+.+.+.
T Consensus 326 -~~~~~~~~i~~i~l~ 340 (427)
T 3i16_A 326 -YDEKRSDIIQSIKFN 340 (427)
T ss_dssp -TTSCCSSSCEEEECS
T ss_pred -CCCCCccEEEEEEEC
Confidence 333 6777775
No 218
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.88 E-value=5.1e-20 Score=179.50 Aligned_cols=312 Identities=15% Similarity=0.094 Sum_probs=199.6
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQ 152 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~ 152 (441)
++++..+.+ ..++.+.+++.+.+... .|.+..+..++++++|+++ +.+ ++++++++++++.+ +.
T Consensus 3 ~~~~~~~~~--~~~~~~~~a~~~~~~~~-------~~~~~~~~~~l~~~la~~~----~~~--~~i~~~sGt~a~~~al~ 67 (390)
T 3b8x_A 3 MINYPLASS--TWDDLEYKAIQSVLDSK-------MFTMGEYVKQYETQFAKTF----GSK--YAVMVSSGSTANLLMIA 67 (390)
T ss_dssp --CBCSCCC--CCCHHHHHHHHHHHHHT-------CCSSCHHHHHHHHHHHHHH----TCS--EEEEESCHHHHHHHHHH
T ss_pred ceeccCCCC--CCCHHHHHHHHHHHHcC-------CCCCChHHHHHHHHHHHHH----CCC--cEEEECCHHHHHHHHHH
Confidence 344444433 35788889999888641 3556778999999999997 543 55666666678887 66
Q ss_pred Hh-------cCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-----CCCccEEEE
Q 013521 153 ML-------LGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-----TSRTDIIFF 220 (441)
Q Consensus 153 ~l-------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i 220 (441)
.+ +++||+|+++.|+|+++...+...| .+++.++++++ .+..|++. .+++++|++
T Consensus 68 ~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~ 134 (390)
T 3b8x_A 68 ALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYG------------LRVKFVDIDIN-TLNIDIESLKEAVTDSTKAILT 134 (390)
T ss_dssp HTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTT------------CEEEEECBCTT-TCSBCHHHHHHHCCTTEEEEEE
T ss_pred HHHhhhhcCCCCcCEEEECCCCcHHHHHHHHHcC------------CEEEEEecCcc-ccCcCHHHHHHHhCcCCeEEEE
Confidence 66 7899999999999999999988888 58899998764 23333221 357899998
Q ss_pred cCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 221 CSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 221 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
+| ++|...+ +++|.++|++||+++|+|++|+...... . ..+....+...+....+|.++ +| +.|++++
T Consensus 135 ~~---~~g~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~-~---~~~g~~~~~~~~s~~~~k~~~-~g-~gG~~~~ 202 (390)
T 3b8x_A 135 VN---LLGNPNN---FDEINKIIGGRDIILLEDNCESMGATFN-N---KCAGTFGLMGTFSSFYSNHIA-TM-EGGCIVT 202 (390)
T ss_dssp EC---GGGCCCC---HHHHHHHHTTSCCEEEEECTTCTTCEET-T---EETTSSSSEEEEECCTTSSSC-SS-SCEEEEE
T ss_pred EC---CccChhh---HHHHHHHHHHcCCEEEEECcCcccCEEC-C---cccccccceEEEEccCCCCCc-cC-CceEEEe
Confidence 74 4555555 8899999999999999999998432211 1 111111121111112356654 34 3499998
Q ss_pred eccccccCCchhHHHHHHHHhhh------------------------------c-CCCcHHHHHHHHHhcCCCcHHHHHH
Q 013521 301 PEELRYSNGYPVIKDFNRIVCTC------------------------------F-NGASNIVQAGGLACLSPDGFQALRT 349 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~------------------------------~-~~~~~~~~~a~~~~l~~~~~~~~~~ 349 (441)
+++.+ .+.+....... + ..++.+...++.+.+ +++++
T Consensus 203 ~~~~l-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-----~~l~~ 270 (390)
T 3b8x_A 203 DDEEI-------YHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL-----KKLPR 270 (390)
T ss_dssp SCHHH-------HHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH-----HHHHH
T ss_pred CCHHH-------HHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH-----HHHHH
Confidence 86432 23333222111 0 013444444443333 45677
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCeeeCCC--Cce-EEEEEcC---CCChHHHHHHHHHhcCeEEeC---CCCcCC-C----
Q 013521 350 VIDYYKENAKIIVDAFQSL-GLKVNGGK--NAP-YVWVQFP---GSSSWDVFAEILEKTHILTIP---GSGFGP-G---- 414 (441)
Q Consensus 350 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~--~~~-~~~~~~~---~~~~~~~~~~ll~~~gi~v~p---g~~f~~-~---- 414 (441)
..++.+++++++.+.|+++ ++++..+. .++ .+++.++ +.+..++.+.|. ++||.+++ |..+.. .
T Consensus 271 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~ 349 (390)
T 3b8x_A 271 FISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLN-SAGIECRPIVTGNFLKNTDVLKY 349 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHH-HTTBCCBCSTTSSGGGCHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHH-HCCCCeeeecCCchhhcchhhhc
Confidence 8888889999999999887 77765432 222 3566666 335566666665 46999987 332111 0
Q ss_pred ------C---------CCeEEEEee--cCHHHHHHHHHHHH
Q 013521 415 ------G---------NEHIRVSAF--GHREYISEACRRLK 438 (441)
Q Consensus 415 ------~---------~~~iRls~~--~~~~~~~~~l~~l~ 438 (441)
. .+.|||++. .++++++.+++.|+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 390 (390)
T 3b8x_A 350 FDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVLK 390 (390)
T ss_dssp CEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHTC
T ss_pred CCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhhC
Confidence 0 136999974 48999999998763
No 219
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.88 E-value=7.3e-21 Score=189.96 Aligned_cols=324 Identities=12% Similarity=0.010 Sum_probs=214.6
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCC---------cEEEcCCcHHHHHH-HHHhc-
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGD---------EIFISDGAQSDISR-LQMLL- 155 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~---------~I~~t~G~~~al~~-l~~l~- 155 (441)
+..+.+.+...+. .....|...++..++++++++|+.+.+|.+.+ ..++|+|++++..+ +....
T Consensus 87 ~~~~~~~l~~~~n-----~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~ 161 (475)
T 3k40_A 87 PAIVADMLSGAIA-----CIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKA 161 (475)
T ss_dssp HHHHHHHHHHHHC-----CCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-----ccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHH
Confidence 3444555555553 34446777789999999999999887776643 68899999888654 43321
Q ss_pred ------------------CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC-----
Q 013521 156 ------------------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST----- 211 (441)
Q Consensus 156 ------------------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~----- 211 (441)
.+++.|+++.++|.++...+...| .+++.+|++.++ ++++ +++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g------------~~~~~v~~d~~~-~d~~~L~~~i~~~ 228 (475)
T 3k40_A 162 KKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGG------------VKLRSVQSENHR-MRGAALEKAIEQD 228 (475)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHT------------CEEEEECCBTTB-CCHHHHHHHHHHH
T ss_pred HHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcC------------CceEEEECCCCC-cCHHHHHHHHHHH
Confidence 135689999999999999999888 589999997643 3322 211
Q ss_pred ---CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccccCCCcceeEEEecCCcc
Q 013521 212 ---TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSKF 287 (441)
Q Consensus 212 ---~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK~ 287 (441)
...+.+|+++.++|+||.+-+ +++|+++|++||+++++|++|+...... ..... +.+......+..|++|+
T Consensus 229 ~~~~~~~~~v~~~~~~t~~G~~~~---l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~--~~gi~~~Ds~~~~~hK~ 303 (475)
T 3k40_A 229 VAEGLIPFYAVVTLGTTNSCAFDY---LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHL--MKGIESADSFNFNPHKW 303 (475)
T ss_dssp HHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHHH
T ss_pred HHCCCccEEEEEEecCCCCcCcCC---HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHH--hcCcccCCEEEECchhc
Confidence 012667788899999999977 8899999999999999999998643321 11111 11212234778899999
Q ss_pred cCCccceeEEEEeeccccccCCchhHHHHHHH---------HhhhcCC---CcHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013521 288 AGFTGVRLGWTVVPEELRYSNGYPVIKDFNRI---------VCTCFNG---ASNIVQAGGLACLSPDGFQALRTVIDYYK 355 (441)
Q Consensus 288 ~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 355 (441)
++ ....+|++++.+.....+.......+... ....... ...+.+.+++..+ +.+.+++++++..
T Consensus 304 l~-~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~---g~~g~~~~~~~~~ 379 (475)
T 3k40_A 304 ML-VNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLY---GVENLQAHIRRHC 379 (475)
T ss_dssp SS-CCSSCEEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cC-CCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHH---hHHHHHHHHHHHH
Confidence 87 55678988887654311000000000000 0000000 1123344444444 3355688889999
Q ss_pred HHHHHHHHHHHhC-CCeeeCCCCceEEEEEcCCC--ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee---cCHHH
Q 013521 356 ENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGS--SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF---GHREY 429 (441)
Q Consensus 356 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~---~~~~~ 429 (441)
++++++.+.|++. |+++..++..+.+++++++. ...++.+++.++.++.+.|+..+ +..++|+++. .++++
T Consensus 380 ~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~---g~~~lR~~~~~~~tt~~d 456 (475)
T 3k40_A 380 NFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIK---DVYFLRMAICSRFTQSED 456 (475)
T ss_dssp HHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEET---TEEEEEEECCCTTCCHHH
T ss_pred HHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEEC---CEEEEEEEeCCCCCCHHH
Confidence 9999999999998 89987766777888888642 24567777777744455554332 3578999974 37899
Q ss_pred HHHHHHHHHhh
Q 013521 430 ISEACRRLKNF 440 (441)
Q Consensus 430 ~~~~l~~l~~~ 440 (441)
+++++++|+++
T Consensus 457 i~~~~~~i~~~ 467 (475)
T 3k40_A 457 MEYSWKEVSAA 467 (475)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 220
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.88 E-value=7.6e-22 Score=192.40 Aligned_cols=255 Identities=16% Similarity=0.158 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHh---hccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEE---cCCcHHHHHH-HHHhcCCCCE
Q 013521 88 DIITSAMAEHAF---ALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFI---SDGAQSDISR-LQMLLGSNVT 160 (441)
Q Consensus 88 ~~~~~al~~~~~---~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~---t~G~~~al~~-l~~l~~~gd~ 160 (441)
..+++++.+... .+.. ...+.|+ ..+..+|++.+|+++ +.+ ..++ ++|+++++.+ +..+++|||+
T Consensus 32 ~~vl~a~~~~~~~~~~~~~-~~~~~y~-~~~~~~Le~~lA~l~----g~e--~alv~p~~~sGt~Ai~~al~all~~GD~ 103 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHP-STGYGYD-DEGRDTLERVYATVF----KTE--AALVRPQIISGTHAISTVLFGILRPDDE 103 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCC-CCTTCTT-CHHHHHHHHHHHHHH----TCS--EEEEETTSCSHHHHHHHHHHHHCCTTCE
T ss_pred HHHHHHHHHhhhhhhccCC-CcCCCCC-hhHHHHHHHHHHHHh----CCC--cEEEECCCccHHHHHHHHHHHhcCCCCE
Confidence 456677777532 1111 3334564 457888999999986 543 3444 7888889887 7788999999
Q ss_pred EEEeC-CCchhhHhHH----------HHhccccccccccCccceeEEeecCCCCCccCC-CCC--CCCccEEEEcC----
Q 013521 161 VAVQD-PSFPAYIDTS----------VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--TSRTDIIFFCS---- 222 (441)
Q Consensus 161 Vlv~~-p~y~~~~~~~----------~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~~~~~~v~i~~---- 222 (441)
|++++ |.|.++...+ +..| .+++.++.++++..+++ +++ .+++++|++++
T Consensus 104 Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G------------~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~ 171 (409)
T 3jzl_A 104 LLYITGQPYDTLEEIVGIRKQGQGSLKDFH------------IGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGY 171 (409)
T ss_dssp EEECSSSCCTTHHHHHTSSSSSSSCTGGGT------------CEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTT
T ss_pred EEEeCCCCcHhHHHHHhcccchhhHHHHcC------------CEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCC
Confidence 99998 9999887544 3334 47888888654323221 111 36899999998
Q ss_pred CCCccccCCCHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc-ceeEEEE
Q 013521 223 PNNPTGHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG-VRLGWTV 299 (441)
Q Consensus 223 p~NPtG~~~~~~~~~~i~~~a~~--~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~l~ 299 (441)
|+||||.+. ++++|+++|++ ||+++|+|++|+.+.+...+.. . +.+++++|+||.+|.+| .+.||++
T Consensus 172 p~nptg~v~---~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~---~----g~Div~~S~sK~lgg~~~~~GG~v~ 241 (409)
T 3jzl_A 172 ADRPSFTIE---KIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPE---V----GADIIAGSLIKNPGGGLAKTGGYIA 241 (409)
T ss_dssp SSSCCCCHH---HHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGG---G----TCSEEEEETTSGGGTTTCSSCEEEE
T ss_pred CCCCcCccc---cHHHHHHHHHhhCCCCEEEEeCCcccccccCCccc---c----CCeEEEECccccCCccCCceEEEEE
Confidence 999998764 59999999999 9999999999997664322321 1 23499999999998444 3469999
Q ss_pred eeccccccCCchhHHHHHHHHhhh----cCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013521 300 VPEELRYSNGYPVIKDFNRIVCTC----FNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGG 375 (441)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 375 (441)
+++++ ++.+....... ..+.....+.++.. +...+..++++..++++++.+.|+++|+++.+.
T Consensus 242 ~~~~l--------i~~l~~~~~~~~~g~~~g~~~~~~~~~l~-----gl~~~~~r~~~~~~~a~~la~~L~~~g~~v~p~ 308 (409)
T 3jzl_A 242 GKEAL--------VDLCGYRLTTPGIGREAGASLYSLLEMYQ-----GFFLAPHVTAQAIKGARFTAAMLAEFGVEADPV 308 (409)
T ss_dssp ECHHH--------HHHHHHHHSCTTTGGGCCCCTTCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEESC
T ss_pred eCHHH--------HHHHHHHhccccccccccccHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 99877 35554432211 11111111222222 233446677888899999999999999888543
Q ss_pred CCce-----EEEEEcC
Q 013521 376 KNAP-----YVWVQFP 386 (441)
Q Consensus 376 ~~~~-----~~~~~~~ 386 (441)
... .+.+.++
T Consensus 309 -~~~~~~~~i~~i~l~ 323 (409)
T 3jzl_A 309 -WDAPRTDLIQSVSFH 323 (409)
T ss_dssp -TTSCCSSSCCEEECS
T ss_pred -CCCCCccEEEEEEeC
Confidence 332 5677776
No 221
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.86 E-value=2.8e-21 Score=189.05 Aligned_cols=255 Identities=16% Similarity=0.131 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHhhcc--CCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEE---cCCcHHHHHH-HHHhcCCCCEE
Q 013521 88 DIITSAMAEHAFALS--TVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFI---SDGAQSDISR-LQMLLGSNVTV 161 (441)
Q Consensus 88 ~~~~~al~~~~~~~~--~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~---t~G~~~al~~-l~~l~~~gd~V 161 (441)
+.+++++.+...... .....+.|+ ..|..+|++.+|+++ +.+ ..++ ++|+++|+.+ +..+++|||+|
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~-~~g~~~Le~~lA~l~----g~e--~alv~p~~~sGt~A~~~al~all~pGD~V 119 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGYN-DIGRDSLDRVYANIF----NTE--SAFVRPHFVNGTHAIGAALFGNLRPNDTM 119 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTT-CHHHHHHHHHHHHHH----TCS--EEEEETTCCSHHHHHHHHHHHTCCTTCEE
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCCC-chhHHHHHHHHHHHh----CCC--ceEEeCCCCcHHHHHHHHHHHhcCCCCEE
Confidence 566777776532211 112233453 347888999999886 543 3355 6777888886 78889999999
Q ss_pred EEeC-CCchhhHhHH-----------HHhccccccccccCccceeEEeecCCCCCccCC-CCC--C--CCccEEEEcC--
Q 013521 162 AVQD-PSFPAYIDTS-----------VIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST--T--SRTDIIFFCS-- 222 (441)
Q Consensus 162 lv~~-p~y~~~~~~~-----------~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~--~--~~~~~v~i~~-- 222 (441)
++++ |.|+++...+ ...| .+++.++. +++..+++ +++ . +++|+|++++
T Consensus 120 l~~~~~~y~~~~~~~g~~~~~~~~~l~~~G------------~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~ 186 (427)
T 3hvy_A 120 MSICGMPYDTLHDIIGMDDSKKVGSLREYG------------VKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRST 186 (427)
T ss_dssp EECSSSCCGGGHHHHTCCTTCCSCCTGGGT------------CEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSC
T ss_pred EEeCCCCchhHHHHhccccchhhhHHHHcC------------CEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCC
Confidence 9999 9999876433 3344 47888877 32222221 111 2 6899999998
Q ss_pred --CCCccccCCCHHHHHHHHHHHHH--cCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCcc-ceeEE
Q 013521 223 --PNNPTGHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTG-VRLGW 297 (441)
Q Consensus 223 --p~NPtG~~~~~~~~~~i~~~a~~--~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G-~r~G~ 297 (441)
|+||||.+ .++++|+++|++ +|+++|+|++|+.+.+...|.. . +.+++++|+||.+|.+| .+.||
T Consensus 187 gyp~nptg~v---~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~---~----gaDiv~~S~sK~lgg~g~~~GG~ 256 (427)
T 3hvy_A 187 GYGWRKSLRI---AEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTD---V----GADIIAGSLIKNIGGGIATTGGY 256 (427)
T ss_dssp CSSSSCCCCH---HHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGG---G----TCSEEEEETTSGGGTTTCCSCEE
T ss_pred CCCCCccccH---HHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcc---c----CCeEEEECCcccccccccceEEE
Confidence 88998765 569999999999 8999999999987664322221 1 23499999999998433 56699
Q ss_pred EEeeccccccCCchhHHHHHHHHhhhcCC--C-cHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013521 298 TVVPEELRYSNGYPVIKDFNRIVCTCFNG--A-SNIV-QAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVN 373 (441)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 373 (441)
+++++++ ++.+.........+ . +.+. ...+. .+...+..+.++..+++.++.+.|+++|+++.
T Consensus 257 i~~~~~l--------i~~l~~~~~~~~~g~~~~~~~~~a~~~~-----~gl~~~~~r~~~~~~~a~~la~~L~~~g~~V~ 323 (427)
T 3hvy_A 257 IAGKEEY--------VTQATFRVTVPGIGGECGSTFGVMRSLY-----EGLFMAPHVTIEAVKGAVFCARIMELAGFDVL 323 (427)
T ss_dssp EEECHHH--------HHHHHHHHSCTTTGGGCCCCTTCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEECHHH--------HHHHHHHhhcCCcccccCCCHHHHHHHH-----HhHhHHHHHHHHHHHHHHHHHHHHHhCCCeec
Confidence 9998877 45555433211111 1 1111 12122 22333466778888999999999999998886
Q ss_pred CCCCce-----EEEEEcC
Q 013521 374 GGKNAP-----YVWVQFP 386 (441)
Q Consensus 374 ~~~~~~-----~~~~~~~ 386 (441)
+. .+. .+.+.+.
T Consensus 324 p~-~~~~~~~li~~~~l~ 340 (427)
T 3hvy_A 324 PK-YNDKRTDIIQAIKFN 340 (427)
T ss_dssp SC-TTSCCSSSEEEEECS
T ss_pred CC-CCCCCceEEEEEeCC
Confidence 53 333 6777775
No 222
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.5e-20 Score=188.16 Aligned_cols=325 Identities=12% Similarity=0.080 Sum_probs=215.3
Q ss_pred cHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCC----------CcEEEcCCcHHHHHH-HHHhc
Q 013521 87 PDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEG----------DEIFISDGAQSDISR-LQMLL 155 (441)
Q Consensus 87 ~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~----------~~I~~t~G~~~al~~-l~~l~ 155 (441)
|..+.+.+..++. .....|...++..++++++++|+.+.++.+. ...++|+|+++++.+ +....
T Consensus 92 ~~~~~~~~~~~~n-----~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar 166 (481)
T 4e1o_A 92 PSLLGDMLADAIN-----CLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAAR 166 (481)
T ss_dssp HHHHHHHHHHHHC-----CCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-----cccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHH
Confidence 4455566666654 3445787788999999999999988666653 267889998888765 43321
Q ss_pred -------------------CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-CCC----
Q 013521 156 -------------------GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD-LST---- 211 (441)
Q Consensus 156 -------------------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~---- 211 (441)
.+++.|+++.++|.++...+...| .+++.+|++.++.++++ +++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g------------~~~~~v~~~~~~~~d~~~Le~~i~~ 234 (481)
T 4e1o_A 167 KNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISL------------VKMKFLPVDDNFSLRGEALQKAIEE 234 (481)
T ss_dssp HHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHT------------CEEEEECCCTTSCCCHHHHHHHHHH
T ss_pred HHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCC------------CceEEEEcCCCCcCCHHHHHHHHHH
Confidence 257899999999999999988877 58999998644333222 111
Q ss_pred ----CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCC-CCCcccccCCCcceeEEEecCCc
Q 013521 212 ----TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDP-SPRSIYEIPGAREVAIEISSFSK 286 (441)
Q Consensus 212 ----~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~-~~~~~~~~~~~~~~~i~i~S~SK 286 (441)
...+.+|+++.++|+||.+-+ +++|+++|++||+++++|++|+...... ..... ..+......+..+++|
T Consensus 235 ~~~~g~~~~~vv~~~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~--~~gi~~aDsi~~~~hK 309 (481)
T 4e1o_A 235 DKQRGLVPVFVCATLGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGF--LKGIEYADSFTFNPSK 309 (481)
T ss_dssp HHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHH
T ss_pred HHhCCCCcEEEEEecCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHH--hcCcccCCEEEEChHH
Confidence 012667788899999999877 8899999999999999999998653321 11111 1111122467789999
Q ss_pred ccCCccceeEEEEeeccccccCCchhHHHHH---------HHHhhhcC---CCcHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013521 287 FAGFTGVRLGWTVVPEELRYSNGYPVIKDFN---------RIVCTCFN---GASNIVQAGGLACLSPDGFQALRTVIDYY 354 (441)
Q Consensus 287 ~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 354 (441)
+++. ...+|++++.++....+.......+. ........ ....+.+.+++..+ +.+.++++.++.
T Consensus 310 ~l~~-p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~---g~~g~~~~~~~~ 385 (481)
T 4e1o_A 310 WMMV-HFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSF---GVKNLQAHVRHG 385 (481)
T ss_dssp HSSC-CSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hcCC-CCceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHh---HHHHHHHHHHHH
Confidence 9974 46688887766542100000000000 00000000 11244455555544 345568888999
Q ss_pred HHHHHHHHHHHHhC-CCeeeCCCCceEEEEEcCCC--ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeec---CHH
Q 013521 355 KENAKIIVDAFQSL-GLKVNGGKNAPYVWVQFPGS--SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFG---HRE 428 (441)
Q Consensus 355 ~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~---~~~ 428 (441)
.++++++.+.|++. |+++..++..+++++++++. ...++.+++.++..+.+.|+.. .+..++|+++.+ +++
T Consensus 386 ~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---~g~~~lR~~~~~~~tt~~ 462 (481)
T 4e1o_A 386 TEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATI---QDKLIIRFTVTSQFTTRD 462 (481)
T ss_dssp HHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEE---TTEEEEEEECCCTTCCHH
T ss_pred HHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEE---CCEEEEEEEeCCCCCCHH
Confidence 99999999999987 89887766788899998642 2456777777763355555432 235689999643 689
Q ss_pred HHHHHHHHHHhh
Q 013521 429 YISEACRRLKNF 440 (441)
Q Consensus 429 ~~~~~l~~l~~~ 440 (441)
++++++++|+++
T Consensus 463 di~~~~~~i~~~ 474 (481)
T 4e1o_A 463 DILRDWNLIRDA 474 (481)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 223
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.86 E-value=3.5e-21 Score=189.25 Aligned_cols=255 Identities=19% Similarity=0.178 Sum_probs=162.6
Q ss_pred CcHHHHHHHHHHHhhhCCCCCC--cEEEcCCcHHHHHH-HHHhcCCCCEEEEeC-CCchhhHhHHHHhcc-ccccccccC
Q 013521 115 GNMALRTAIADKFYKDMGIEGD--EIFISDGAQSDISR-LQMLLGSNVTVAVQD-PSFPAYIDTSVIVGQ-AGKFLKETG 189 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~~--~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~-p~y~~~~~~~~~~g~-~~~~~~~~~ 189 (441)
+..++++.++++ ++.+.. +|++++| ++|+.. +..++++||+|++++ |.|..+...+...|. +..+...+
T Consensus 66 ~~~~l~~~la~~----~g~~~~~~~i~~~sG-t~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G- 139 (431)
T 3ht4_A 66 GRDTLEKVYADV----FGAEAGLVRPQIISG-THAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYN- 139 (431)
T ss_dssp HHHHHHHHHHHH----TTCSEECCBTTSCSH-HHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGT-
T ss_pred hHHHHHHHHHHH----hCCCcccccceeeCH-HHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcC-
Confidence 444555555555 465433 3346654 788887 677899999999998 999998766543210 00000000
Q ss_pred ccceeEEeecCCCCCccCCCCC-----CCCccEEEEc-CCCCccccCCCHHHHHHHHHHHHH--cCcEEEEccccccccc
Q 013521 190 KYRNIVYMNCRPENNFFPDLST-----TSRTDIIFFC-SPNNPTGHAATWQQLKKLVEFAKA--NGSIIVYDSAYAAYIT 261 (441)
Q Consensus 190 ~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~a~~--~~~~ii~De~~~~~~~ 261 (441)
.+++.++.++++ ..|++. .+++++|+++ +||||+|..++.+++++|+++|++ +|+++|+|++|+.+.+
T Consensus 140 --~~~~~v~~~~~~--~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~ 215 (431)
T 3ht4_A 140 --IGYNAVPLTEGG--LVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIE 215 (431)
T ss_dssp --CEEEECCBCTTS--SBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSS
T ss_pred --CEEEEeCCCCCC--CcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhcc
Confidence 588888887643 333221 3689999999 689999999999999999999999 9999999999998775
Q ss_pred CCCCCcccccCCCcceeEEEecCCcccCC-ccceeEEEEeeccccccCCchhHHHHHHHHhhhcC----CCcHHHHHHHH
Q 013521 262 DPSPRSIYEIPGAREVAIEISSFSKFAGF-TGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFN----GASNIVQAGGL 336 (441)
Q Consensus 262 ~~~~~~~~~~~~~~~~~i~i~S~SK~~~~-~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~ 336 (441)
...+.. . +.+++++|+||.+|. .+...||+++++++ ++.+......... +++.....++.
T Consensus 216 ~~~~~~---~----g~Di~~~S~sK~lgg~~~~~GG~v~~~~~l--------i~~l~~~~~~~~~g~~~~~~~~~~~~~~ 280 (431)
T 3ht4_A 216 EQEPCH---V----GADLMAGSLIKNPGGGIVKTGGYIVGKEQY--------VEACAYRLTSPGIGAEAGASLYSLQEMY 280 (431)
T ss_dssp SCCGGG---T----TCSEEEEETTSGGGTTTCSSCEEEEECHHH--------HHHHHHHHSCTTTTTSCSCCCSCSHHHH
T ss_pred CCCccc---c----CCeEEEcCccccCCCCCCCceEEEEecHHH--------HHHHHHHhccCCcccccCccHHHHHHHH
Confidence 433221 1 234999999999652 11334999999877 3455443322111 11111112122
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCC----ceEEEEEcCCC-ChHHHHHHHHH
Q 013521 337 ACLSPDGFQALRTVIDYYKENAKIIVDAFQSLGLKVNGGKN----APYVWVQFPGS-SSWDVFAEILE 399 (441)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----~~~~~~~~~~~-~~~~~~~~ll~ 399 (441)
.. ...+..+.++..++++++.+.|+++|+++.+.+. +..+.+.++.. ...++++.+.+
T Consensus 281 ~~-----l~~~~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~~~~~~~~~~l~~ 343 (431)
T 3ht4_A 281 QG-----FFLAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDRMIAFCQAIQY 343 (431)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCHHHHHHHHHHHHH
T ss_pred hH-----hhhHHHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCHHHHHHHHHHHHh
Confidence 22 2334667788888999999999998887754322 22567777632 12344455443
No 224
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.85 E-value=1.4e-19 Score=173.80 Aligned_cols=319 Identities=11% Similarity=0.111 Sum_probs=205.0
Q ss_pred CCCCcHHHHHHHHHHHhhccC-CCCC---CCCCC--CcCcHHHHHHHHHHHhhhCCCCC-CcEEE-cCCcHHHHHH-HHH
Q 013521 83 TQPIPDIITSAMAEHAFALST-VKGY---KGYGA--EQGNMALRTAIADKFYKDMGIEG-DEIFI-SDGAQSDISR-LQM 153 (441)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~-~~~~---~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~-~~I~~-t~G~~~al~~-l~~ 153 (441)
..+.|+.|++++.+.+.+... ..+. .+.++ ..-..+.|+.+++++ ++++ ++|++ |+|+|+++++ +..
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll----~~~~~~evif~t~~~T~a~n~a~~~ 96 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELL----AVPDNYKVIFLQGGGCGQFSAVPLN 96 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHH----TCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHh----CCCCCCeEEEEcCchHHHHHHHHHh
Confidence 467899999999998865442 1111 11111 123455677777775 7764 57888 5899999998 677
Q ss_pred hcCC--CCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCC-C--CCCCccEEEEcCCCCccc
Q 013521 154 LLGS--NVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL-S--TTSRTDIIFFCSPNNPTG 228 (441)
Q Consensus 154 l~~~--gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~-~--~~~~~~~v~i~~p~NPtG 228 (441)
++.+ ||+|++..-++.+. .+...+.+.| ..++.++.+.+....++. + ..+++++|.+++-.|.||
T Consensus 97 l~~~~~Gd~v~~~~~g~~~~-~~~~~a~~~G---------~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG 166 (377)
T 3e77_A 97 LIGLKAGRCADYVVTGAWSA-KAAEEAKKFG---------TINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHG 166 (377)
T ss_dssp HGGGSTTCEEEECCCSHHHH-HHHHHHTTTS---------EEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTT
T ss_pred ccCCCCCCeEEEEECCHHHH-HHHHHHHHhC---------CceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchh
Confidence 8755 89998877777664 3444444333 356666765443433331 1 147889999888888999
Q ss_pred cCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccC
Q 013521 229 HAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSN 308 (441)
Q Consensus 229 ~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~ 308 (441)
++.|. +|+++|+++++|.+.+-. ..|..+..+ + +++.|..|++|.+| +|+++++++++...
T Consensus 167 ~~~pi--------i~~~~~~~~~vD~~q~~g---~~~id~~~~----~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~~ 227 (377)
T 3e77_A 167 VEFDF--------IPDVKGAVLVCDMSSNFL---SKPVDVSKF----G--VIFAGAQKNVGSAG--VTVVIVRDDLLGFA 227 (377)
T ss_dssp EECSS--------CCCCTTCCEEEECTTTTT---SSCCCGGGC----S--EEEEEGGGTTSCTT--CEEEEEETTSCSCC
T ss_pred eEchh--------hhccCCCEEEEEcccccC---CCCCchhhc----C--EEEEecccccCCCc--cEEEEEcHHHHhhc
Confidence 99995 367899999999998732 113344333 2 46788999999777 78888888875321
Q ss_pred C---chhHHHHHHHH--hhhcCCCcHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhC-CCeeeCC----CC
Q 013521 309 G---YPVIKDFNRIV--CTCFNGASNIVQAGGLACLSPDGFQ-ALRTVIDYYKENAKIIVDAFQSL-GLKVNGG----KN 377 (441)
Q Consensus 309 ~---~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~ 377 (441)
. +...+ +.... ....++++.....+..++++--... .++.+.++.++..+++++.|+++ |+...+. ..
T Consensus 228 ~~~~p~~~~-~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs 306 (377)
T 3e77_A 228 LRECPSVLE-YKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRS 306 (377)
T ss_dssp CTTSCGGGC-HHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBC
T ss_pred cCCCCchhh-HHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcC
Confidence 1 11111 11111 1223444554444444444311112 35888889999999999999988 7775321 12
Q ss_pred ceEEEEEcCCCCh-----HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 378 APYVWVQFPGSSS-----WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 378 ~~~~~~~~~~~~~-----~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+..+.+.+++.+. ..++..+. ++||.+.+|.. ..+.+|+|++ .++++++.+++.|+++
T Consensus 307 ~~ivsf~~~~~~~~~~~~~~~l~~l~-~~Gi~~~~g~~----~~g~iRiS~~~~~t~edId~l~~al~~~ 371 (377)
T 3e77_A 307 KMNIPFRIGNAKGDDALEKRFLDKAL-ELNMLSLKGHR----SVGGIRASLYNAVTIEDVQKLAAFMKKF 371 (377)
T ss_dssp SSEEEEEESSTTCCHHHHHHHHHHHH-HTTEESCBCCT----TTCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCchhHHHHHHHHHH-HCCcEEeCCCC----cCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4467888875332 24555554 56999998863 2346999974 4899999999999876
No 225
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.85 E-value=1.8e-19 Score=186.74 Aligned_cols=296 Identities=13% Similarity=0.057 Sum_probs=186.7
Q ss_pred CCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhH-HHHhccccccccccC
Q 013521 112 AEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDT-SVIVGQAGKFLKETG 189 (441)
Q Consensus 112 ~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~~~~~~ 189 (441)
+..-..++++.+|+++ +.+ ..+++++|+++++.+ +.+++++||.|+++.|+|.++... +...|
T Consensus 171 ~~~~i~e~e~~lA~~~----gae-~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~G---------- 235 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVY----NAD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAG---------- 235 (730)
T ss_dssp TBTHHHHHHHHHHHHT----TCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTC----------
T ss_pred ChHHHHHHHHHHHHHH----CCC-cEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCC----------
Confidence 3445678899999885 665 458899999999887 788899999999999999998877 66667
Q ss_pred ccceeEEeecCCCC-C----ccC-CC-----CC--CCC------c----cEEEEcCCCCccccCCCHHHHHHHHHHHHHc
Q 013521 190 KYRNIVYMNCRPEN-N----FFP-DL-----ST--TSR------T----DIIFFCSPNNPTGHAATWQQLKKLVEFAKAN 246 (441)
Q Consensus 190 ~~~~v~~v~~~~~~-~----~~~-~~-----~~--~~~------~----~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~ 246 (441)
.+++.++.+.+. + +++ ++ ++ ..+ + +++++++| ||||.+.+ +++|+++|++|
T Consensus 236 --a~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~ 309 (730)
T 1c4k_A 236 --GRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHL 309 (730)
T ss_dssp --CEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGG
T ss_pred --CEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHc
Confidence 466766654220 1 111 12 21 122 3 89999999 68999998 88999999999
Q ss_pred CcEEEEccccccc-ccCCC-C-Cccccc---CCCcceeEEEecCCcccCCcccee-EEEEeeccccccCCchh-HHHHHH
Q 013521 247 GSIIVYDSAYAAY-ITDPS-P-RSIYEI---PGAREVAIEISSFSKFAGFTGVRL-GWTVVPEELRYSNGYPV-IKDFNR 318 (441)
Q Consensus 247 ~~~ii~De~~~~~-~~~~~-~-~~~~~~---~~~~~~~i~i~S~SK~~~~~G~r~-G~l~~~~~~~~~~~~~~-~~~~~~ 318 (441)
|+++++|++|+.. .+.+. + .+.... ....++++++.|+||++ +|++. |+++++++.+......+ ...+..
T Consensus 310 g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~ 387 (730)
T 1c4k_A 310 CDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNN 387 (730)
T ss_dssp BSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHH
T ss_pred CCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHH
Confidence 9999999999753 23321 1 111111 11134679999999986 46664 56667665531100000 122222
Q ss_pred HHh-hhcCCCcHHHHH---HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCCC----------------
Q 013521 319 IVC-TCFNGASNIVQA---GGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS-L-GLKVNGGK---------------- 376 (441)
Q Consensus 319 ~~~-~~~~~~~~~~~~---a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~---------------- 376 (441)
... ....+++..... ++...+.. +.-....+++.++.+.+++.|++ . |+++..+.
T Consensus 388 ~~~~~~stsp~~~~iaal~aA~~~l~~---~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~ 464 (730)
T 1c4k_A 388 SFNLFMSTSPFYPMYAALDVNAAMQEG---EAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMA 464 (730)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHT
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHhhhCCCeEEcccccccccccccccccccc
Confidence 211 112223333332 23333332 12244566777788888888887 3 77764431
Q ss_pred ---------------------Cc-eE-----EEEEcCC------------CChHHHHHHHHHhcCeEEeCCCCcCCCCCC
Q 013521 377 ---------------------NA-PY-----VWVQFPG------------SSSWDVFAEILEKTHILTIPGSGFGPGGNE 417 (441)
Q Consensus 377 ---------------------~~-~~-----~~~~~~~------------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~ 417 (441)
.+ ++ +.+.+++ ....++.+.|.+ +||.+.+. +..
T Consensus 465 ~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e-~GI~v~~~------~~~ 537 (730)
T 1c4k_A 465 NNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRD-HGIIPEKS------DLN 537 (730)
T ss_dssp TCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHH-TTCCCSEE------CSS
T ss_pred ccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHH-CCcEEEEC------CCC
Confidence 11 12 5666642 344566666555 49988653 346
Q ss_pred eEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 418 HIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 418 ~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.+|+++ +.++++++.+++.|+++
T Consensus 538 ~ir~~~s~g~t~e~i~~Ll~aL~~i 562 (730)
T 1c4k_A 538 SILFLMTPAETPAKMNNLITQLLQL 562 (730)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 789886 45889999999998764
No 226
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.83 E-value=7.2e-19 Score=183.89 Aligned_cols=166 Identities=14% Similarity=0.118 Sum_probs=119.8
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccce
Q 013521 115 GNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRN 193 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~ 193 (441)
-..++++.+++++ +.+ +.+++++|+++++.+ +.+++++||.|+++.|+|.++...+...| .+
T Consensus 206 ~v~~~ee~la~l~----G~d-~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G------------~~ 268 (755)
T 2vyc_A 206 AFGESEKYAARVF----GAD-RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTG------------AK 268 (755)
T ss_dssp HHHHHHHHHHHHH----TCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHC------------CE
T ss_pred HHHHHHHHHHHHh----CCC-ceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcC------------CE
Confidence 4466677777765 654 568899999999887 78889999999999999999988888888 57
Q ss_pred eEEeecCCCC-Cc--cC-----CCC---C----CCCc--------cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEE
Q 013521 194 IVYMNCRPEN-NF--FP-----DLS---T----TSRT--------DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSII 250 (441)
Q Consensus 194 v~~v~~~~~~-~~--~~-----~~~---~----~~~~--------~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~i 250 (441)
++.++.+.+. +. .. +.+ + .+++ ++++++|| ||||.+.+ +++|+++|++||+++
T Consensus 269 ~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~l 344 (755)
T 2vyc_A 269 PVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRL 344 (755)
T ss_dssp EEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEE
T ss_pred EEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEE
Confidence 8888775421 11 01 211 1 1233 48999998 79999998 889999999999999
Q ss_pred EEccccccc-ccCCC---CCcccc--cCCCcceeEEEecCCcccCCccce-eEEEEeecc
Q 013521 251 VYDSAYAAY-ITDPS---PRSIYE--IPGAREVAIEISSFSKFAGFTGVR-LGWTVVPEE 303 (441)
Q Consensus 251 i~De~~~~~-~~~~~---~~~~~~--~~~~~~~~i~i~S~SK~~~~~G~r-~G~l~~~~~ 303 (441)
++|++|+.. .+.+. ..++.. .+-..+++|++.|+||++ +|++ .|+++++++
T Consensus 345 ivDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~ 402 (755)
T 2vyc_A 345 HFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREG 402 (755)
T ss_dssp EEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECC
T ss_pred EEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccc--cCcCCeeeeeecCc
Confidence 999999853 22221 112211 111245788999999986 5666 677778766
No 227
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.81 E-value=4.6e-18 Score=162.65 Aligned_cols=320 Identities=15% Similarity=0.183 Sum_probs=200.8
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHhhccC-CCCCC---CCCC--CcCcHHHHHHHHHHHhhhCCCC-CCcEEE-cCCc
Q 013521 73 RLIRLGIGDTTQPIPDIITSAMAEHAFALST-VKGYK---GYGA--EQGNMALRTAIADKFYKDMGIE-GDEIFI-SDGA 144 (441)
Q Consensus 73 ~~i~l~~g~~~~~~~~~~~~al~~~~~~~~~-~~~~~---~Y~~--~~g~~~lr~~ia~~l~~~~~~~-~~~I~~-t~G~ 144 (441)
.+++|+-|. .+.|+.++++|.+.+.+... ..+.+ +.++ ..-..+.|+.+++++ +++ +++|++ |+|+
T Consensus 5 ~~~~f~pgp--t~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll----~~~~~~~v~f~t~~~ 78 (361)
T 3m5u_A 5 RKINFSAGP--STLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLY----ELNDDYEVLFLQGGA 78 (361)
T ss_dssp CCEECCSSS--CCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHH----TCCTTEEEEEESSHH
T ss_pred ceEeecCCC--CCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEEcCcH
Confidence 467777664 46789999999998765432 11111 1111 123455667777775 775 458888 9999
Q ss_pred HHHHHH-HHHhcCCCCEEEEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCCCCCc--cCCCCCCCCccEEE
Q 013521 145 QSDISR-LQMLLGSNVTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF--FPDLSTTSRTDIIF 219 (441)
Q Consensus 145 ~~al~~-l~~l~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~--~~~~~~~~~~~~v~ 219 (441)
|+++++ +..++ +||++.+..-+..+. ...++..| .++..++.+.++.+ .++.+-.+++++|.
T Consensus 79 T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G------------~~v~~~~~~~~g~~~~~~~~~l~~~t~lv~ 145 (361)
T 3m5u_A 79 SLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILG------------VNVKTVASSEESNFDHIPRVEFSDNADYAY 145 (361)
T ss_dssp HHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTT------------CCEEEEEECTTTTSCSCCCCCCCTTSSEEE
T ss_pred HHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcC------------CceEEEecccCcCCCcCChhhcCCCCCEEE
Confidence 999998 67777 888663333233332 22333344 48888888765432 22222236789999
Q ss_pred EcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEE
Q 013521 220 FCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTV 299 (441)
Q Consensus 220 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~ 299 (441)
+++..|.||.+++. | ++ +|+++++|.+.+-.. .|..+.. ..+++.|..|++|.+| +|+++
T Consensus 146 ~~~~e~~tG~~~~~-----i---~~-~~~~~~vD~~q~~g~---~~id~~~------~d~~~~s~~K~~gp~G--~g~l~ 205 (361)
T 3m5u_A 146 ICSNNTIYGTQYQN-----Y---PK-TKTPLIVDASSDFFS---RKVDFSN------IALFYGGVQKNAGISG--LSCIF 205 (361)
T ss_dssp EESEETTTTEECSS-----C---CC-CSSCEEEECGGGTTS---SCCCCTT------EEEEEEETTTTSSCTT--CEEEE
T ss_pred EeCCCCCcceeCCc-----c---cc-cCCEEEEEcccccCC---CCCCccc------CCEEEEechhccCCCc--cEEEE
Confidence 98888899999772 3 23 499999999887321 1333321 2378889999998666 88888
Q ss_pred eecccccc----CCchhHHHHHHH--HhhhcCCCcHHHHHHHHHhc---CCC-cHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013521 300 VPEELRYS----NGYPVIKDFNRI--VCTCFNGASNIVQAGGLACL---SPD-GFQALRTVIDYYKENAKIIVDAFQSLG 369 (441)
Q Consensus 300 ~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l---~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g 369 (441)
++++++.. ..+...+ +... ....+.+++.....+..+++ .+. + ++.+.++.++..+++++.|++++
T Consensus 206 ~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG---~~~i~~~~~~l~~~l~~~L~~~~ 281 (361)
T 3m5u_A 206 IRKDMLERSKNKQIPSMLN-YLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGG---LDKVHEKNSQKATMLYECIDLSN 281 (361)
T ss_dssp EEHHHHHHHHTCCCCGGGC-HHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHHHHTST
T ss_pred EcHHHHhhhcCCCCCceee-hHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHHHHHCC
Confidence 88877421 0111111 1111 11223344544443333333 333 3 47788888999999999999885
Q ss_pred -C-eeeCC---CCceEEEEEcCC-C-ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 370 -L-KVNGG---KNAPYVWVQFPG-S-SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 370 -~-~~~~~---~~~~~~~~~~~~-~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+ ....+ .....+.+.+++ . .+.++.. .++++||.+.+|... -+.+|+|+. +++++++.+++.|+++
T Consensus 282 g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~-~L~~~gI~~~~g~~~----~g~iRiS~~~~~t~edId~l~~al~~~ 356 (361)
T 3m5u_A 282 GFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVK-EAEEAGMIGLKGHRI----LGGIRASIYNALNLDQVKTLCEFMKEF 356 (361)
T ss_dssp TSEEESSCGGGBCSSEEEEEESSCTTHHHHHHH-HHHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeeeccCCHHHcCCeEEEEECCCchhhhHHHHH-HHHHCCCEEecCCCc----cCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 5 44322 123467778774 1 2235554 455669999887542 245999974 4899999999999875
No 228
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.80 E-value=7.4e-18 Score=162.74 Aligned_cols=323 Identities=11% Similarity=0.122 Sum_probs=194.9
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccC-CCC---CCCCCC--CcCcHHHHHHHHHHHhhhCCCCC-CcEEE-cCCcH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALST-VKG---YKGYGA--EQGNMALRTAIADKFYKDMGIEG-DEIFI-SDGAQ 145 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~-~~~---~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~-~~I~~-t~G~~ 145 (441)
++.+.-|. .+.|+.++++|.+.+.+... ..+ ..+.++ ..-..+.|+.+|+++ ++++ ++|++ |+|+|
T Consensus 28 ~yl~~agp--t~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll----~~~~~~evif~t~~~T 101 (386)
T 3qm2_A 28 VFNFSSGP--AMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLL----NIPSNYKVLFCHGGGR 101 (386)
T ss_dssp CEECCSSS--CCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHH----TCCTTEEEEEEESCTT
T ss_pred CccccCCC--CCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHh----CCCCCceEEEEcCCch
Confidence 34444442 46789999999887654321 111 111111 346788999999987 7754 57888 69999
Q ss_pred HHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecC--CCCC-ccCC-CCC--CCCccEE
Q 013521 146 SDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCR--PENN-FFPD-LST--TSRTDII 218 (441)
Q Consensus 146 ~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~--~~~~-~~~~-~~~--~~~~~~v 218 (441)
+++++ +..++++||+|++..-++.+.. +...+...| ++..++.+ ..+. ..++ ++. .+++++|
T Consensus 102 ~a~n~ai~~l~~~gd~v~~~~~~~~~~~-~~~~a~~~G----------~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV 170 (386)
T 3qm2_A 102 GQFAGVPLNLLGDKTTADYVDAGYWAAS-AIKEAKKYC----------APQIIDAKITVDGKRAVKPMREWQLSDNAAYL 170 (386)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESSHHHHH-HHHHHTTTS----------EEEEEECEEEETTEEEECCGGGCCCCTTCSCE
T ss_pred HHHHHHHHhccCCCCeEEEEeCCHHHHH-HHHHHHHhC----------CeEEEecCcccCCCCCCchHHHhhcCCCCcEE
Confidence 99998 7888899999876555555532 333333211 46666665 3221 2222 221 3689999
Q ss_pred EEcCCCCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEE
Q 013521 219 FFCSPNNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGW 297 (441)
Q Consensus 219 ~i~~p~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~ 297 (441)
.+++-.|.||.+ .| +++|. +|+++++|.+.+- ...|..+..+ + +.+.|..|++|.+| +|+
T Consensus 171 ~~~h~et~tG~~i~p---i~~i~-----~g~~~~vDa~qs~---g~~pidv~~~----~--~~~~s~hK~lGP~G--~g~ 231 (386)
T 3qm2_A 171 HYCPNETIDGIAIDE---TPDFG-----PEVVVTADFSSTI---LSAPLDVSRY----G--VIYAGAQKNIGPAG--LTL 231 (386)
T ss_dssp EECSEETTTTEECCC---CCCCC-----TTCCEEEECTTTT---TSSCCCGGGC----S--EEEEETTTTTCCTT--EEE
T ss_pred EEECCcCCcCEecCc---hhhhc-----CCCEEEEEccccc---CCCCCCcccc----C--EEEEecccccCCCc--cEE
Confidence 888888889996 67 44443 7999999999873 2224444333 2 45688999998666 899
Q ss_pred EEeeccccccCC---chhHHHHHHH-Hh-hhcCCCc---HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 013521 298 TVVPEELRYSNG---YPVIKDFNRI-VC-TCFNGAS---NIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSLG 369 (441)
Q Consensus 298 l~~~~~~~~~~~---~~~~~~~~~~-~~-~~~~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 369 (441)
++++++++.... +...+ +... .. ....+++ ..+..+++..+.+. ..++...++.++.++++++.|++++
T Consensus 232 l~v~~~~~~~~~~~~p~~~~-~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~--gG~~~i~~~~~~l~~~l~~~l~~~~ 308 (386)
T 3qm2_A 232 VIVREDLLGKAHESCPSILD-YTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQ--GGVAAMHKINQQKAELLYGVIDNSD 308 (386)
T ss_dssp EEEEGGGCSCCCTTSCGGGC-HHHHHHC-------CCSHHHHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred EEECHHHHhhhcccCCcHHH-HHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999988753211 11111 1111 11 1112223 33333344433322 0357888888999999999999887
Q ss_pred Cee-e-CC--CCceEEEEEcCC-CChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEee--cCHHHHHHHHHHHHhh
Q 013521 370 LKV-N-GG--KNAPYVWVQFPG-SSSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAF--GHREYISEACRRLKNF 440 (441)
Q Consensus 370 ~~~-~-~~--~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~--~~~~~~~~~l~~l~~~ 440 (441)
+.. . .+ .....+.+.+++ ..+.++... ++++||.+.+|... .+.+|+|++ +++++++.+++.|+++
T Consensus 309 ~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~-L~~~gI~~~~g~~~----~~~iRiS~~~~~t~edId~l~~~l~~~ 381 (386)
T 3qm2_A 309 FYRNDVAQANRSRMNVPFQLADNTLDKVFLEE-SFAAGLHALKGHRV----VGGMRASIYNAMPIEGVKALTDFMIDF 381 (386)
T ss_dssp SEECCBCGGGBCSSEEEEEESSGGGHHHHHHH-HHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcccCCCHHHcCceEEEEECCCccccHHHHHH-HHHCCCEEeCCCCC----cCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 522 1 11 223467788873 223455555 55669999887543 235999974 4899999999999875
No 229
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.74 E-value=6.7e-17 Score=166.22 Aligned_cols=289 Identities=13% Similarity=0.078 Sum_probs=172.2
Q ss_pred CcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHHHHHH-HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCcc
Q 013521 113 EQGNMALRTAIADKFYKDMGIEGDEIFISDGAQSDISR-LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKY 191 (441)
Q Consensus 113 ~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~al~~-l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 191 (441)
..-..++++.+|+++ |.+ ..+++++|++.++.+ +.++++|||.|+++.++|.++...+...|
T Consensus 194 ~g~i~eaE~~lA~~f----Ga~-~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsG------------ 256 (715)
T 3n75_A 194 SGPHKEAEQYIARVF----NAD-RSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSD------------ 256 (715)
T ss_dssp BTHHHHHHHHHHHHH----TCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSC------------
T ss_pred cHHHHHHHHHHHHHh----CCC-CceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcC------------
Confidence 334578888888886 543 467789998888876 78899999999999999999999988888
Q ss_pred ceeEEeecCCCCCccC---------CCC---C----CCCc---cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEE
Q 013521 192 RNIVYMNCRPENNFFP---------DLS---T----TSRT---DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVY 252 (441)
Q Consensus 192 ~~v~~v~~~~~~~~~~---------~~~---~----~~~~---~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 252 (441)
.++++++.+.+ .+.. +.+ + .+++ +++++++| ||+|.+++ +++|+++|+++ .+++
T Consensus 257 a~pv~v~~~~~-~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~--~liv 329 (715)
T 3n75_A 257 VTPIYFRPTRN-AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVK--SIHF 329 (715)
T ss_dssp CEEEEECCCBC-TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCS--EEEE
T ss_pred CEEEEEecccc-ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC---HHHHHHHhCcC--cEEE
Confidence 57888876532 2221 211 1 1333 48999999 99999999 66777777665 3799
Q ss_pred cccccccc-cCCC-C-CcccccCCCccee-EEEecCCcccCCccc-eeEEEEeeccccccCCchhHHHHHHHHhhhc-CC
Q 013521 253 DSAYAAYI-TDPS-P-RSIYEIPGAREVA-IEISSFSKFAGFTGV-RLGWTVVPEELRYSNGYPVIKDFNRIVCTCF-NG 326 (441)
Q Consensus 253 De~~~~~~-~~~~-~-~~~~~~~~~~~~~-i~i~S~SK~~~~~G~-r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 326 (441)
||+|+... +.+. + .+........|.+ +++.|+||+++ |+ ..||+.++++.. ...+........ .+
T Consensus 330 DEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~i~-------~~~~~~~~~~~~STS 400 (715)
T 3n75_A 330 DSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVN-------EETFNEAYMMHTTTS 400 (715)
T ss_dssp ECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEEESCCC-------HHHHHHHHHHTSCSS
T ss_pred ccccccccccCCccccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEeCchhh-------HHHHHHHHHhhcCCC
Confidence 99998643 3321 1 1111111112443 67999999975 54 468999887642 234443333332 23
Q ss_pred CcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC-----C--CeeeCCC-----------------------
Q 013521 327 ASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQSL-----G--LKVNGGK----------------------- 376 (441)
Q Consensus 327 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g--~~~~~~~----------------------- 376 (441)
++.+...+..+++..-....-+.++++..++.+.+++.|+++ | +++..+.
T Consensus 401 psy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~ 480 (715)
T 3n75_A 401 PHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNID 480 (715)
T ss_dssp CCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCC
T ss_pred chHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccc
Confidence 444443333333321000011334556666666666666544 1 2222211
Q ss_pred -Cce-E----EEEEcCCC----------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecCHHHHHHHHHHHH
Q 013521 377 -NAP-Y----VWVQFPGS----------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGHREYISEACRRLK 438 (441)
Q Consensus 377 -~~~-~----~~~~~~~~----------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~~~~~~~~l~~l~ 438 (441)
+.. + +.+.+++. .+...+...|+++||.+--.+ ...|=+- ++.++++++.++++|.
T Consensus 481 ~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d------~~~vl~l~s~g~~~~~~~~L~~aL~ 554 (715)
T 3n75_A 481 NEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG------PYNLLFLFSIGIDKTKALSLLRALT 554 (715)
T ss_dssp SSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE------TTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC------CCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 011 1 55555431 122344445567798875432 2334333 3557888888888876
Q ss_pred hh
Q 013521 439 NF 440 (441)
Q Consensus 439 ~~ 440 (441)
++
T Consensus 555 ~~ 556 (715)
T 3n75_A 555 DF 556 (715)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 230
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.67 E-value=2.6e-15 Score=147.32 Aligned_cols=328 Identities=12% Similarity=0.098 Sum_probs=191.3
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.+||+..|- ..+ ..+|.+.+++.+.+.... ....+..-..++.+.|++.+ + ..+.+.+++++++
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~-----~~~~~~~~~~~lae~l~~~~----p-~~~~v~f~~SGsE 154 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI-----NLTGHNLLEGRLARLICERF----P-QIEQLRFTNSGTE 154 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS-----CCCSEESSHHHHHHHHHHHS----T-TCSEEEEESSHHH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC-----CccCCcHHHHHHHHHHHHhC----C-CCCEEEEeCchHH
Confidence 467889986553 333 367999999999887421 11122344566777777664 3 4689999999999
Q ss_pred HHHH-HH--HhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC-CCCccEEEEcC
Q 013521 147 DISR-LQ--MLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST-TSRTDIIFFCS 222 (441)
Q Consensus 147 al~~-l~--~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~-~~~~~~v~i~~ 222 (441)
|... +. ......++|+..+.+|++....+........ .. .....+|.++.......+++ .+++.+|+ ..
T Consensus 155 A~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~-----~~-~~~~~~p~nd~~~l~~~l~~~~~~iAavI-vE 227 (454)
T 4ao9_A 155 ANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTT-----VP-FDFLVLPYNDAQTARAQIERHGPEIAVVL-VE 227 (454)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTS-----CC-SEEEEECTTCHHHHHHHHHHTGGGEEEEE-EC
T ss_pred HHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCcc-----CC-CCcccCCCchHHHHHHHHhhcCCceEEEE-ec
Confidence 9875 42 2223457899999999885432211110000 00 13333433211110001111 23455555 46
Q ss_pred C-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCCccceeEEEEe
Q 013521 223 P-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVV 300 (441)
Q Consensus 223 p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~ 300 (441)
| +...|.+ .+++.+++|.++|++||+++|.||++.. ..+.......+.-.|| +-+++|.+| .|+.+|.+.+
T Consensus 228 Pv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~a~e~~gv~PD----i~t~gK~lg-gG~Piga~~~ 300 (454)
T 4ao9_A 228 PMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHGLANKLGIRSD----LTTLGKYIG-GGMSFGAFGG 300 (454)
T ss_dssp SEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTCHHHHHTCCCS----EEEEEGGGG-TTSSCEEEEE
T ss_pred cccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccccchhccCCCCc----EEEeccccC-CCCcceeeee
Confidence 6 5557755 5688999999999999999999999873 1121111112222345 336899998 8999999999
Q ss_pred eccccccCCchhHHHHHH----HHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh----CCCee
Q 013521 301 PEELRYSNGYPVIKDFNR----IVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKIIVDAFQS----LGLKV 372 (441)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~ 372 (441)
+++++ +.+.. .....+.+.++++..|+++.|+.-.. ++..++.+++.++|.+.|++ +++..
T Consensus 301 ~~ei~--------~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~~~~~ 369 (454)
T 4ao9_A 301 RADVM--------ALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT---PEAAGALAERGEALRARLNALCANEGVAM 369 (454)
T ss_dssp CHHHH--------GGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHHHHTBSC
T ss_pred HHHHH--------HHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence 88874 22211 11122344678888888887762211 33344455555555555544 34322
Q ss_pred eCCCCceEEEEEcCC-----------CCh---HHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEEeecCHHHHHHHHHHHH
Q 013521 373 NGGKNAPYVWVQFPG-----------SSS---WDVFAEILEKTHILTIPGSGFGPGGNEHIRVSAFGHREYISEACRRLK 438 (441)
Q Consensus 373 ~~~~~~~~~~~~~~~-----------~~~---~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls~~~~~~~~~~~l~~l~ 438 (441)
....-|..+.+.+.. .+. ..++..++++ ||.+.|. +++.++...+++++++++++|+
T Consensus 370 ~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p~--------~~~~~s~~~T~~dId~~l~al~ 440 (454)
T 4ao9_A 370 QFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSPR--------GFVVLSLPLTDADIDRYVAAIG 440 (454)
T ss_dssp EEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCTT--------CEEECCTTCCHHHHHHHHHHHH
T ss_pred EEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcCC--------CCEEEeCCCCHHHHHHHHHHHH
Confidence 111134455555521 011 2344556655 9999773 2455666678999999999998
Q ss_pred hhC
Q 013521 439 NFL 441 (441)
Q Consensus 439 ~~l 441 (441)
++|
T Consensus 441 ~~l 443 (454)
T 4ao9_A 441 SFI 443 (454)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 231
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.64 E-value=3.4e-14 Score=135.60 Aligned_cols=342 Identities=13% Similarity=0.122 Sum_probs=205.2
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHhhccCCCCCC--CCCCCcCcHHHHHHHHHHH-hhhCCCCCC----cEEEcCCcHH
Q 013521 74 LIRLGIGDTTQPIPDIITSAMAEHAFALSTVKGYK--GYGAEQGNMALRTAIADKF-YKDMGIEGD----EIFISDGAQS 146 (441)
Q Consensus 74 ~i~l~~g~~~~~~~~~~~~al~~~~~~~~~~~~~~--~Y~~~~g~~~lr~~ia~~l-~~~~~~~~~----~I~~t~G~~~ 146 (441)
-|+|=-.++ ..++.+.+++...+.+... .++. +|....-..+-.|.+|.-. .+.|+++.. ||-.-||+++
T Consensus 56 ~ieLIASEN--~~S~aV~~a~gS~ltnKYa-EGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~A 132 (490)
T 3ou5_A 56 GLELIASEN--FCSRAALEALGSCLNNKYS-EGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPA 132 (490)
T ss_dssp SEECCTTCC--CCCHHHHHHHTSGGGTCCC-CC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred CceEecCCC--cCCHHHHHHhcCccccccc-CCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHH
Confidence 466665554 3568888888887764332 2222 2322222334445555443 347888876 8999999999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCchhhHhHHH-----HhccccccccccCccceeEEeecCCCCCccCCCCC------CCCc
Q 013521 147 DISRLQMLLGSNVTVAVQDPSFPAYIDTSV-----IVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST------TSRT 215 (441)
Q Consensus 147 al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~------~~~~ 215 (441)
.+...+++++|||+|+..+..+.++..--. ..+..| ++.+.+..+++++++ ..|.++ ..+|
T Consensus 133 N~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg-------~~~~~~~Y~vd~~t~-~IDyd~~~~~A~~~kP 204 (490)
T 3ou5_A 133 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS-------IFFESMPYKLNPKTG-LIDYNQLALTARLFRP 204 (490)
T ss_dssp HHHHHHHHCC-CCCEECBC-----------------------------------CBCEETTTT-EECHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCEEEecccCCCCcccccccCCCccccccc-------ccccccccccCCCCC-cccHHHHHHHHhhcCC
Confidence 999999999999999999998877643221 111111 123566666666533 334332 3689
Q ss_pred cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc-cccCCC-CCcccccCCCcceeEEEecCCcccCCccc
Q 013521 216 DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA-YITDPS-PRSIYEIPGAREVAIEISSFSKFAGFTGV 293 (441)
Q Consensus 216 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~-~~~~~~-~~~~~~~~~~~~~~i~i~S~SK~~~~~G~ 293 (441)
|+|+.-.-.+|- .++ .+++.++|++.|.++++|-+|.- +...+. |.|+. .. .++.+|.+|++ +|.
T Consensus 205 klIi~G~SaY~r--~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~-~A-----DvVTtTTHKTL--rGP 271 (490)
T 3ou5_A 205 RLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-HA-----DIVTTTTHKTL--RGA 271 (490)
T ss_dssp SEEEECCSSCCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TC-----SEEEEESSSTT--CSC
T ss_pred CeEEECCccCcc--ccC---HHHHHHHHhhcccEEEechhhhhhhhcccccCCccc-cc-----eEEeccccccc--cCC
Confidence 998865445543 345 77888888899999999999874 444443 43432 21 27889999998 799
Q ss_pred eeEEEEeeccccccC-------CchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHH
Q 013521 294 RLGWTVVPEELRYSN-------GYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGF-QALRTVIDYYKENAKIIVDAF 365 (441)
Q Consensus 294 r~G~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L 365 (441)
|-|.+.++++..... ...+.+.+....-....+.+.+...|+.+.--.+.. ...+...++..++.+.|.+.|
T Consensus 272 rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L 351 (490)
T 3ou5_A 272 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADAL 351 (490)
T ss_dssp SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 999999887531100 001234454433333344455555555544221211 345778888889999999999
Q ss_pred HhCCCeeeC-CCCceEEEEEcCC-CChHHHHHHHHHhcCeEEe----CCCCcCCCCCCeEEEEe------ecCHHHHHHH
Q 013521 366 QSLGLKVNG-GKNAPYVWVQFPG-SSSWDVFAEILEKTHILTI----PGSGFGPGGNEHIRVSA------FGHREYISEA 433 (441)
Q Consensus 366 ~~~g~~~~~-~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~----pg~~f~~~~~~~iRls~------~~~~~~~~~~ 433 (441)
.+.|+++.. ..+...+++++.+ ......++.+|++.||.+. |++. .+..++.|||+. +-.++++++.
T Consensus 352 ~~~G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~-sp~~~SGiRiGTpa~TtRG~~e~dm~~I 430 (490)
T 3ou5_A 352 LERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRV 430 (490)
T ss_dssp HHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred HhCCCeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCC-CCCCCCeeEECCHHHHhCCCCHHHHHHH
Confidence 999998853 3456679999852 2345667888888999987 5541 233467899994 2257888887
Q ss_pred HHHHHhh
Q 013521 434 CRRLKNF 440 (441)
Q Consensus 434 l~~l~~~ 440 (441)
.+.|.++
T Consensus 431 A~~I~~~ 437 (490)
T 3ou5_A 431 VDFIDEG 437 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 232
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.63 E-value=7.1e-14 Score=137.65 Aligned_cols=343 Identities=13% Similarity=0.108 Sum_probs=199.9
Q ss_pred CCCCeEEeCCC--CCCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCC-CCCcEEEcCCcH
Q 013521 70 PDARLIRLGIG--DTTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGI-EGDEIFISDGAQ 145 (441)
Q Consensus 70 ~~~~~i~l~~g--~~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~-~~~~I~~t~G~~ 145 (441)
.++.++|+..| ...+ ..+|.+.+++.+.+.++. .....+.+.....+|.+.+++. .+. ..+.++++++++
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~--~~~~~~~~~~~~~~lae~L~~~----~p~~~~~~v~f~~sGs 135 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFT--HTCFMVTPYEGYVAVTEQLNRL----TPGDHAKRTVLFNSGA 135 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS--CCTTTTSCCHHHHHHHHHHHHH----SSCSSCEEEEEESSHH
T ss_pred CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhcc--CcccCccCcHHHHHHHHHHHHh----CCCCCCcEEEEeCChH
Confidence 45678888765 3333 367899999999887653 1112222333444555555554 333 356799999999
Q ss_pred HHHHH-H--HHhcCCCCEEEEeCCCchhhHhHHHHh-ccccccc-cccCccceeEEeecCCCCCc-cCCCC---------
Q 013521 146 SDISR-L--QMLLGSNVTVAVQDPSFPAYIDTSVIV-GQAGKFL-KETGKYRNIVYMNCRPENNF-FPDLS--------- 210 (441)
Q Consensus 146 ~al~~-l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~-~~~~~~~~v~~v~~~~~~~~-~~~~~--------- 210 (441)
+|... + .........|+....+|++....+... +...... ........+..+|....... ..+..
T Consensus 136 EA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 215 (456)
T 4atq_A 136 EAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAI 215 (456)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHH
Confidence 99886 4 233345578999999999865444333 2211000 00000124445554221000 00100
Q ss_pred -------CCCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEE
Q 013521 211 -------TTSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEI 281 (441)
Q Consensus 211 -------~~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i 281 (441)
...++.+++ ..| +.-.|.+ .|++.+++|.++|++||+++|.||+...|...+.......+.-.|| +
T Consensus 216 ~~~e~~~~~~~iAAvi-vEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PD----i 290 (456)
T 4atq_A 216 TMIEKQIGGDQVAAII-IEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPD----I 290 (456)
T ss_dssp HHHHHHTCGGGEEEEE-ECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCS----E
T ss_pred HHHHHhhcCCceEEEE-eccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCc----h
Confidence 012445544 466 5556755 5788999999999999999999999997655543333333332455 3
Q ss_pred ecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 013521 282 SSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACLSPDGFQALRTVIDYYKENAKII 361 (441)
Q Consensus 282 ~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 361 (441)
-+++|.+| .|+.+|.+++++++. +.+.......+++.++++..++.+.|+.-.. +.+.++.++.-+++
T Consensus 291 vt~gK~lg-gg~P~~av~~~~~i~--------~~~~~~~~~~Tf~gnpla~aaala~L~~i~~---~~l~~~~~~~g~~l 358 (456)
T 4atq_A 291 ITMAKGIA-GGLPLSAITGRADLL--------DAVHPGGLGGTYGGNPVACAAALAAIDTMEQ---HDLNGRARHIEELA 358 (456)
T ss_dssp EEECGGGG-TTSSCEEEEEEHHHH--------TTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHH
T ss_pred hhhhhccc-CcCCceeeEecHHHH--------hcccccCCCCCCCCChHHHHhhHHHHHHHhh---ccHHHHHHHHHHHH
Confidence 35889998 999999999988874 2222222234455788888888888862111 22333444444444
Q ss_pred HHHHHhC----CC---ee---eCCCCceEEEEEcCCC----C----hHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE-
Q 013521 362 VDAFQSL----GL---KV---NGGKNAPYVWVQFPGS----S----SWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS- 422 (441)
Q Consensus 362 ~~~L~~~----g~---~~---~~~~~~~~~~~~~~~~----~----~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls- 422 (441)
.+.|+++ .. .+ .. .-|.++-+++... . ...+...+++ +|+.+.+... ..+.|||.
T Consensus 359 ~~~L~~l~~~~~~~~~~~v~~VR-G~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~~g~----~~~~irl~P 432 (456)
T 4atq_A 359 LGKLRELAAELSAGGGSVVGDIR-GRGAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILTCGT----YGNVIRLLP 432 (456)
T ss_dssp HHHHHHHHHHCC-----CEEEEE-EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEEECT----TSCEEEECC
T ss_pred HHHHHHHHHhcccccCCceEEee-ecceEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEecCC----CCCEEEEEC
Confidence 4444432 11 11 11 1366666776311 1 2245566665 4999887432 24679998
Q ss_pred -eecCHHHHHHHHHHHHhhC
Q 013521 423 -AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 423 -~~~~~~~~~~~l~~l~~~l 441 (441)
+..+++++++++++|.++|
T Consensus 433 pL~it~~~id~~l~~l~~al 452 (456)
T 4atq_A 433 PLVISDELLIDGLEVLAAAI 452 (456)
T ss_dssp CTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 4568999999999998864
No 233
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.59 E-value=3e-13 Score=133.67 Aligned_cols=342 Identities=10% Similarity=0.060 Sum_probs=196.6
Q ss_pred CCCCeEEeCCCC--CCC-CCcHHHHHHHHHHHhhccCCCCCCCCCCCcCcHHHHHHHHHHHhhhCCCCCCcEEEcCCcHH
Q 013521 70 PDARLIRLGIGD--TTQ-PIPDIITSAMAEHAFALSTVKGYKGYGAEQGNMALRTAIADKFYKDMGIEGDEIFISDGAQS 146 (441)
Q Consensus 70 ~~~~~i~l~~g~--~~~-~~~~~~~~al~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~I~~t~G~~~ 146 (441)
.++.++|+..|- ..+ ..+|.+.+++.+.+.++........+ ..+....+|+.|.+..+.+.+.|++++++++
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~-----~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsE 139 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGR-----MSDQTVMLSEKLVEVSPFDSGRVFYTNSGSE 139 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTE-----EEHHHHHHHHHHHHHSSCSSCEEEEESSHHH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccc-----cCHHHHHHHHHHHhhCCCCccEEEEeCchHH
Confidence 356788887664 222 36789999999988764311111111 1233444555555444556679999999999
Q ss_pred HHHH-HHH--hc-----CCC-CEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCC------CCCccC----
Q 013521 147 DISR-LQM--LL-----GSN-VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRP------ENNFFP---- 207 (441)
Q Consensus 147 al~~-l~~--l~-----~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~------~~~~~~---- 207 (441)
|... +.. .. +++ ..|+...-+|++....+.....................++... .+....
T Consensus 140 A~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 219 (473)
T 4e3q_A 140 ANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVA 219 (473)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHH
Confidence 9886 421 11 233 5788899999986444333322111000000001233333211 100000
Q ss_pred ----CCCC-----CCCccEEEEcCC-CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcc
Q 013521 208 ----DLST-----TSRTDIIFFCSP-NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGARE 276 (441)
Q Consensus 208 ----~~~~-----~~~~~~v~i~~p-~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
++++ .++.-+.+|.-| +.-.|.+ .+++.+++|.++|++||+++|.||+...|...+.......+.-.||
T Consensus 220 ~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PD 299 (473)
T 4e3q_A 220 RLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPD 299 (473)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCS
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCC
Confidence 0010 122224455566 5556755 5678999999999999999999999998755443322223333455
Q ss_pred eeEEEecCCcccCCcc-ceeEEEEeeccccccCCchhHHHHHHHH-------hhhcCCCcHHHHHHHHHhcCCCcHHHHH
Q 013521 277 VAIEISSFSKFAGFTG-VRLGWTVVPEELRYSNGYPVIKDFNRIV-------CTCFNGASNIVQAGGLACLSPDGFQALR 348 (441)
Q Consensus 277 ~~i~i~S~SK~~~~~G-~r~G~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 348 (441)
+-+++|.++ .| +.+|.+++++++. +.+.... ...+++.++++..++++.|+.-.. +
T Consensus 300 ----i~t~~K~l~-gG~~Pl~av~~~~~i~--------~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~---~ 363 (473)
T 4e3q_A 300 ----AIISSKNLT-AGFFPMGAVILGPELS--------KRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMN---E 363 (473)
T ss_dssp ----EEEECGGGG-TTSSCCEEEEECHHHH--------HHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHH---S
T ss_pred ----hHHhccccc-CCCCCcccccccHHHH--------HHhccccccccccccCCCCCCCcchhhhhhhhhhhhcc---c
Confidence 335899998 66 9999999998873 4443211 123345678888888888762111 2
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CCeeeCCCCceEEEEEcC-CC----------C-hHHHHHHHHHhcCeEEeCCCCcC
Q 013521 349 TVIDYYKENAKIIVDAFQSL----GLKVNGGKNAPYVWVQFP-GS----------S-SWDVFAEILEKTHILTIPGSGFG 412 (441)
Q Consensus 349 ~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~-~~----------~-~~~~~~~ll~~~gi~v~pg~~f~ 412 (441)
.+.++.++.-+++.+.|+++ .+.-.. .-|.++-+++. +. . ...+...+++ +|+++.|.
T Consensus 364 ~l~~~~~~~g~~l~~~L~~l~~~~~v~~vR-G~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~---- 437 (473)
T 4e3q_A 364 GLAENVRRLAPRFEERLKHIAERPNIGEYR-GIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTD-LGLICRPL---- 437 (473)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTSTTEEEEE-EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TTEECEEE----
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCeeEEe-ecceEEEEEEecCccccccccccHHHHHHHHHHHHH-CCcEEEec----
Confidence 33444455555666665543 232222 13556666652 10 1 2345555554 59999873
Q ss_pred CCCCCeEEEE--eecCHHHHHHHHHHHHhhC
Q 013521 413 PGGNEHIRVS--AFGHREYISEACRRLKNFL 441 (441)
Q Consensus 413 ~~~~~~iRls--~~~~~~~~~~~l~~l~~~l 441 (441)
.+.+||+ +..+++++++++++|.++|
T Consensus 438 ---g~~i~l~PPL~it~~eid~~~~~l~~al 465 (473)
T 4e3q_A 438 ---GQSVVLCPPFILTEAQMDEMFDKLEKAL 465 (473)
T ss_dssp ---TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2478887 4568999999999988763
No 234
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.51 E-value=4.5e-14 Score=148.73 Aligned_cols=205 Identities=13% Similarity=0.121 Sum_probs=128.1
Q ss_pred CccEEEEcCC--CCccccC-CCHHHHHHHHHHHHHcCcEEEEcccccccccCCCCCcccccCCCcceeEEEecCCcccCC
Q 013521 214 RTDIIFFCSP--NNPTGHA-ATWQQLKKLVEFAKANGSIIVYDSAYAAYITDPSPRSIYEIPGAREVAIEISSFSKFAGF 290 (441)
Q Consensus 214 ~~~~v~i~~p--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~SK~~~~ 290 (441)
++.+|+ ..| ++..|.. .|++.+++|.++|++||+++|.||++..|...+.......+.-.+| +.++||.++
T Consensus 594 ~iaavi-~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PD----iitlsK~L~- 667 (831)
T 4a0g_A 594 HVGALI-IEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPD----IACFAKLLT- 667 (831)
T ss_dssp EEEEEE-ECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCS----EEEECGGGG-
T ss_pred cEEEEE-EecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCc----EEEEecccc-
Confidence 445544 456 7888876 4889999999999999999999999997755543222222322344 337999998
Q ss_pred cc-ceeEEEEeeccccccCCchhHHHHHH------HHhhhcCCCcHHHHHHHHHhcC---CCcH-HHHHHHHHHHHHH-H
Q 013521 291 TG-VRLGWTVVPEELRYSNGYPVIKDFNR------IVCTCFNGASNIVQAGGLACLS---PDGF-QALRTVIDYYKEN-A 358 (441)
Q Consensus 291 ~G-~r~G~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~---~~~~-~~~~~~~~~~~~~-~ 358 (441)
.| +++|++++++++. +.+.. .....+.+.+++++.++.+.|+ ++.. +.+.++.+.+++. .
T Consensus 668 gG~~Plgav~~~~~i~--------~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~ 739 (831)
T 4a0g_A 668 GGMVPLAVTLATDAVF--------DSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWD 739 (831)
T ss_dssp TTSSCCEEEEECHHHH--------HTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSC
T ss_pred cCccCcEEEEECHHHH--------HHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 67 8999999998873 22211 1122334567888888888775 2111 1111111111110 1
Q ss_pred HHHHHHHHhC-CCeeeCCCCceEEEEEcCCC---------ChHHHHHHHHHhcCeEEeCCCCcCCCCCCeEEEE--eecC
Q 013521 359 KIIVDAFQSL-GLKVNGGKNAPYVWVQFPGS---------SSWDVFAEILEKTHILTIPGSGFGPGGNEHIRVS--AFGH 426 (441)
Q Consensus 359 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~iRls--~~~~ 426 (441)
+.+.+.+.++ .+.... ..|.++.+++... ...++...+++ +||.+.|+ .+.|||+ +..+
T Consensus 740 ~~l~~~l~~~~~v~~vr-g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gv~v~p~-------g~~lrl~pp~~~t 810 (831)
T 4a0g_A 740 EELVQQISSHSAVQRVV-VIGTLFALELKADASNSGYASLYAKSLLIMLRE-DGIFTRPL-------GNVIYLMCGPCTS 810 (831)
T ss_dssp HHHHHHHHHSTTEEEEE-EETTEEEEEEC---------CHHHHHHHHHHHH-TTEECCCB-------TTEEEEECCTTCC
T ss_pred HHHHHHHhhCCCceeEe-ecccEEEEEEecCccccccchHHHHHHHHHHHH-CCcEEEec-------CCEEEEECCCCCC
Confidence 2344555555 333333 3567777777421 12345556554 59999874 2689998 4568
Q ss_pred HHHHHHHHHHHHhhC
Q 013521 427 REYISEACRRLKNFL 441 (441)
Q Consensus 427 ~~~~~~~l~~l~~~l 441 (441)
++++++++++|.+++
T Consensus 811 ~e~id~~~~~l~~~l 825 (831)
T 4a0g_A 811 PEICRRLLTKLYKRL 825 (831)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
No 235
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.41 E-value=2e-11 Score=117.13 Aligned_cols=293 Identities=10% Similarity=0.031 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhhhCCCCC-CcEEEcCCcHHHHHH-HHHhcCC---C-CEEEEeCCCchhhHhHHHHhccccccccccCcc
Q 013521 118 ALRTAIADKFYKDMGIEG-DEIFISDGAQSDISR-LQMLLGS---N-VTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKY 191 (441)
Q Consensus 118 ~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~al~~-l~~l~~~---g-d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 191 (441)
.|-+.++--+-+..|++. ...++++|+|.++.. ++..+++ | |.|+++..+|.++...+..+|
T Consensus 116 ~ltn~l~ld~L~~~G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~G------------ 183 (501)
T 3hl2_A 116 KITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAG------------ 183 (501)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHHHcCCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcC------------
Confidence 333333333333346653 479999999977665 6777663 4 999999999999999999999
Q ss_pred ceeEEeecCCCC-CccCCCCC-------C-CCccEEEEcC-CCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccc-
Q 013521 192 RNIVYMNCRPEN-NFFPDLST-------T-SRTDIIFFCS-PNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI- 260 (441)
Q Consensus 192 ~~v~~v~~~~~~-~~~~~~~~-------~-~~~~~v~i~~-p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~- 260 (441)
+++++++...+. .+..+++. . .+..++++++ +.|-.|.+-+ +++|+++|++||+++++|++|+-..
T Consensus 184 l~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~~ 260 (501)
T 3hl2_A 184 FEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQSS 260 (501)
T ss_dssp CEEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCH
T ss_pred CeEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhhhh
Confidence 466666552211 22233221 1 1333444444 4554445455 9999999999999999999998533
Q ss_pred cCC-CCCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHHHhc
Q 013521 261 TDP-SPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGLACL 339 (441)
Q Consensus 261 ~~~-~~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 339 (441)
+.. .|.+...+. .-++++.|..|.+- .-+..|.+...++-. .+.+... .....++.++....+ .+
T Consensus 261 ~~~~lp~sA~~~G---rAD~vVqS~HK~ll-vpIGG~ii~~~d~e~-------l~~~~~~--yPGr~S~Spsldl~~-tL 326 (501)
T 3hl2_A 261 KCMHLIQQGARVG---RIDAFVQSLDKNFM-VPVGGAIIAGFNDSF-------IQEISKM--YPGRASASPSLDVLI-TL 326 (501)
T ss_dssp HHHHHHHHHHHHS---CCCEEEEEHHHHHC-CCSSCEEEEESCHHH-------HHHHHHT--SCSCBCSHHHHHHHH-HH
T ss_pred hhhhhHHHHHhcC---CCcEEEecccccce-eecCceEEEeCCHHH-------HHHHHHh--CCCCCCCcHHHHHHH-HH
Confidence 111 123333331 12378999999984 434434444444321 2333211 111112333332233 33
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCC-CceEEEEEcCCC------ChHHHHHHHHHhcCe---E-
Q 013521 340 SPDGFQALRTVIDYYKENAKIIVDAFQSL----GLKVNGGK-NAPYVWVQFPGS------SSWDVFAEILEKTHI---L- 404 (441)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~-~~~~~~~~~~~~------~~~~~~~~ll~~~gi---~- 404 (441)
.+.+.+.++++.++..++.+++.+.|+++ |-++...+ +..-+-+.+... ....+-..|..+ +| -
T Consensus 327 L~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r-~vsG~Rv 405 (501)
T 3hl2_A 327 LSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTR-QVSGARV 405 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHT-TCCSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhc-CCCccee
Confidence 33445566788888888888888888875 55554322 344456666422 123445555554 44 2
Q ss_pred EeCCC----------CcCCCC----CCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 405 TIPGS----------GFGPGG----NEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 405 v~pg~----------~f~~~~----~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
|.+|. .|+... ..++-++. +.+++|++.++++|.+.
T Consensus 406 v~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~ 457 (501)
T 3hl2_A 406 VPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRC 457 (501)
T ss_dssp ECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44555 454321 35676664 45899999999999875
No 236
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.33 E-value=7.7e-11 Score=114.46 Aligned_cols=297 Identities=12% Similarity=0.029 Sum_probs=169.4
Q ss_pred CcHHHHHHHHHHHhhhCCCCC-CcEEEcCCcHHHHH-HHHHhcCC----CCEEEEeCCCchhhHhHHHHhcccccccccc
Q 013521 115 GNMALRTAIADKFYKDMGIEG-DEIFISDGAQSDIS-RLQMLLGS----NVTVAVQDPSFPAYIDTSVIVGQAGKFLKET 188 (441)
Q Consensus 115 g~~~lr~~ia~~l~~~~~~~~-~~I~~t~G~~~al~-~l~~l~~~----gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~ 188 (441)
+...+.+.+..|+.+.+|++. ...++++|+|.+.. +++..+++ ++.|+++..+|.++...+..+|
T Consensus 95 ~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~G--------- 165 (450)
T 3bc8_A 95 LLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAG--------- 165 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTT---------
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcC---------
Confidence 456677788888877556653 35689999985554 45555554 8999999999999999999999
Q ss_pred CccceeEEeecCCC-CCccCCCCC-------CC-CccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccc
Q 013521 189 GKYRNIVYMNCRPE-NNFFPDLST-------TS-RTDIIFFCSP-NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAA 258 (441)
Q Consensus 189 ~~~~~v~~v~~~~~-~~~~~~~~~-------~~-~~~~v~i~~p-~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~ 258 (441)
+.++.++...+ .....+++. .+ +.+++++.+| .|.+|.+-+ +++|+++|++||+++++|++|+-
T Consensus 166 ---l~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~ 239 (450)
T 3bc8_A 166 ---FEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGL 239 (450)
T ss_dssp ---CEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTT
T ss_pred ---CeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCch
Confidence 46666654221 122333221 12 3456666677 455667767 99999999999999999999995
Q ss_pred cccCCC--CCcccccCCCcceeEEEecCCcccCCccceeEEEEeeccccccCCchhHHHHHHHHhhhcCCCcHHHHHHHH
Q 013521 259 YITDPS--PRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYSNGYPVIKDFNRIVCTCFNGASNIVQAGGL 336 (441)
Q Consensus 259 ~~~~~~--~~~~~~~~~~~~~~i~i~S~SK~~~~~G~r~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 336 (441)
...... +.+....... .+++.|.+|++. .....+++..++... .+.+... .....++.++.....
T Consensus 240 ~~~~~~~l~~~a~~~~~A---D~~v~S~HK~l~-a~~~~~~l~~rd~~~-------~~~~~~~--~~g~~s~SpsL~l~~ 306 (450)
T 3bc8_A 240 QSSKCMHLIQQGARVGRI---DAFVQSLDKNFM-VPVGGAIIAGFNEPF-------IQDISKM--YPGRASASPSLDVLI 306 (450)
T ss_dssp TCHHHHHHHHHHHHHSCC---CEEEEEHHHHHS-CCSSCEEEEESCHHH-------HHHHHHH--SCSCBCSHHHHHHHH
T ss_pred hhhhhHhHHHHHhcccCC---CEEEECCccCCC-chhccEEEEecCHHH-------HHHHHHH--hhcCCcccHHHHHHH
Confidence 322100 1111111112 378899999996 666677777654321 2222211 101112334444444
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCC-CceEEEEEcC------CCChHHHHHHHHHh--cCe
Q 013521 337 ACLSPDGFQALRTVIDYYKENAKIIVDAFQSL----GLKVNGGK-NAPYVWVQFP------GSSSWDVFAEILEK--THI 403 (441)
Q Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~-~~~~~~~~~~------~~~~~~~~~~ll~~--~gi 403 (441)
.++. .+.+.+++..++..+..+.+.+.|+++ |..+...+ .+.-..+.+. ..+...+...+... .|.
T Consensus 307 ~l~~-~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~ 385 (450)
T 3bc8_A 307 TLLS-LGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGA 385 (450)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSC
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccc
Confidence 4443 244445555555566666666666543 66654422 1111223232 11233444444332 233
Q ss_pred EEeC--------CCCc---C----CCCCCeEEEEe--ecCHHHHHHHHHHHHhh
Q 013521 404 LTIP--------GSGF---G----PGGNEHIRVSA--FGHREYISEACRRLKNF 440 (441)
Q Consensus 404 ~v~p--------g~~f---~----~~~~~~iRls~--~~~~~~~~~~l~~l~~~ 440 (441)
.+.+ |..| + .....+|=+.+ +.+++++++++++|+++
T Consensus 386 ~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~ 439 (450)
T 3bc8_A 386 RAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKC 439 (450)
T ss_dssp EEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3331 1222 1 11234555443 55899999999999875
No 237
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=96.92 E-value=0.0002 Score=57.63 Aligned_cols=31 Identities=13% Similarity=-0.052 Sum_probs=27.8
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|+||.+||.+|+++|+ .++|+||||+..
T Consensus 49 gVSr~tVReAl~~L~~eGlv~~~~g~G~~V~~~ 81 (134)
T 4ham_A 49 GVNPNTVSKAYQELERQEVIITVKGKGTFIANQ 81 (134)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEcCcEEEEeCC
Confidence 3459999999999999999 999999999753
No 238
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=96.50 E-value=0.00084 Score=53.22 Aligned_cols=31 Identities=13% Similarity=-0.059 Sum_probs=27.6
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|+||.+||..|+++|+ .++|+|+||+..
T Consensus 46 ~vSr~tvr~Al~~L~~~G~i~~~~~~G~~V~~~ 78 (126)
T 3ic7_A 46 EVNANTVMRSYEYLQSQEVIYNKRGIGFFVASG 78 (126)
T ss_dssp -CCSGGGHHHHHHHHTTTSEEEETTTEEEECTT
T ss_pred CcCHHHHHHHHHHHHHCCcEEEEcCCccEEccC
Confidence 4569999999999999999 899999999753
No 239
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=96.28 E-value=0.00099 Score=52.74 Aligned_cols=31 Identities=10% Similarity=-0.035 Sum_probs=27.8
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|+||.+||..|+++|+ .++|+|+||+..
T Consensus 48 ~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 80 (125)
T 3neu_A 48 AVNPNTVSRAYQELERAGYIYAKRGMGSFVTSD 80 (125)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred CcCHHHHHHHHHHHHHCCeEEEecCCEEEEecC
Confidence 4559999999999999999 899999999863
No 240
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=96.10 E-value=0.0014 Score=50.83 Aligned_cols=30 Identities=13% Similarity=-0.109 Sum_probs=27.2
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||.+||..|+++|+ .++|+|+||+.
T Consensus 44 ~vSr~tvr~al~~L~~~Gli~~~~~~G~~V~~ 75 (113)
T 3tqn_A 44 QINPLTVSKAYQSLLDDNVIEKRRGLGMLVKA 75 (113)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECT
T ss_pred CcCHHHHHHHHHHHHHCCCEEEecCCeEEEeC
Confidence 3459999999999999999 89999999975
No 241
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=96.05 E-value=0.0015 Score=51.74 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=27.3
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||.+||..|+.+|+ .++|+|+||+.
T Consensus 46 ~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~ 77 (126)
T 3by6_A 46 KINPNTVAKAYKELEAQKVIRTIPGKGTFITG 77 (126)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECS
T ss_pred CcCHHHHHHHHHHHHHCCCEEEecCCeEEEcc
Confidence 3459999999999999999 89999999975
No 242
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=95.91 E-value=0.002 Score=51.27 Aligned_cols=30 Identities=13% Similarity=-0.078 Sum_probs=27.4
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||.+||..|+++|+ .++|+|+||+.
T Consensus 39 gvSr~tVr~Al~~L~~~Gli~~~~g~G~~V~~ 70 (129)
T 2ek5_A 39 RINPATARNGLTLLVEAGILYKKRGIGMFVSA 70 (129)
T ss_dssp TCCHHHHHHHHHHHHTTTSEEEETTTEEEECT
T ss_pred CcCHHHHHHHHHHHHHCCcEEEecCCEEEEec
Confidence 4559999999999999999 89999999975
No 243
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=95.34 E-value=0.0041 Score=55.13 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=27.9
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|.||.+|+++|+++|+ .++|+||||+..
T Consensus 44 ~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 76 (236)
T 3edp_A 44 SSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQPK 76 (236)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred CcCHHHHHHHHHHHHHCCCEEEECCceEEEccC
Confidence 4559999999999999999 899999999753
No 244
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=95.10 E-value=0.006 Score=55.32 Aligned_cols=31 Identities=6% Similarity=-0.092 Sum_probs=26.0
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|.||.+|+++|+++|+ .++|+||||+..
T Consensus 64 ~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 96 (272)
T 3eet_A 64 GVSDTVALEARKVLMAEGLVEGRSGSGTYVRER 96 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECCC--EEECCC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCceEEEecC
Confidence 3459999999999999999 999999999864
No 245
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=94.94 E-value=0.0074 Score=53.73 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=27.7
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|+||.+|++.|+++|+ .++|+||||+..
T Consensus 45 ~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 77 (243)
T 2wv0_A 45 GISRMTVRQALSNLVNEGLLYRLKGRGTFVSKP 77 (243)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECTTSCEEECCC
T ss_pred CcCHHHHHHHHHHHHHCCcEEEeCCCeEEEeCC
Confidence 3459999999999999999 899999999753
No 246
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=94.87 E-value=0.0067 Score=54.19 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=27.0
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|.||.+|+++|+++|+ . +|+||||+..
T Consensus 47 ~vSr~tvr~Al~~L~~~G~i~~-~g~Gt~V~~~ 78 (248)
T 3f8m_A 47 EVARETVRQALRELLIDGRVER-RGRTTVVARP 78 (248)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEE-ETTEEEECCC
T ss_pred CcCHHHHHHHHHHHHHCCCEEe-CCCEEEEccC
Confidence 4559999999999999999 7 9999999864
No 247
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=94.79 E-value=0.0071 Score=45.78 Aligned_cols=31 Identities=19% Similarity=0.056 Sum_probs=27.3
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++++||.+|+..|+++|+ .++|+|+||...
T Consensus 46 ~vSr~tvr~al~~L~~~Gli~~~~g~G~~v~~~ 78 (102)
T 1v4r_A 46 GVAAKTVSRALAVLKSEGLVSSRGALGTVVEKN 78 (102)
T ss_dssp SSCTTHHHHHTTTTTTSSCCEEETTTEEESCSC
T ss_pred CcCHHHHHHHHHHHHHCCCEEEeCCCeEEEccC
Confidence 3459999999999999999 888999999754
No 248
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=94.57 E-value=0.0087 Score=53.12 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=27.8
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|.||-+|+.+|+++|+ .++|+||||+..
T Consensus 40 ~vSr~tvr~Al~~L~~~g~i~~~~g~G~~V~~~ 72 (239)
T 3bwg_A 40 EVSKSTITKSLELLEQKGAIFQVRGSGIFVRKH 72 (239)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEeCCceEEEecC
Confidence 4459999999999999999 899999999754
No 249
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=94.43 E-value=0.01 Score=44.92 Aligned_cols=30 Identities=7% Similarity=-0.082 Sum_probs=25.9
Q ss_pred CCcccchhhhHHhhhhCCC--CCc--cccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVP--RHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~--~~g~~v~~ 42 (441)
+++|+||.+|+..|+++|+ .++ ++|+||+.
T Consensus 54 gVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~ 87 (102)
T 2b0l_A 54 GITRSVIVNALRKLESAGVIESRSLGMKGTYIKV 87 (102)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEE
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEec
Confidence 3459999999999999999 667 69999974
No 250
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=93.94 E-value=0.013 Score=51.95 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=27.6
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
|++|+||-.|+..|+.+|+ .++|+||||+.
T Consensus 42 gVSR~tVReAL~~L~~eGlv~~~~g~G~~V~~ 73 (239)
T 1hw1_A 42 GVTRTTLREVLQRLARDGWLTIQHGKPTKVNN 73 (239)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTEEEEECC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEecCCCcEeeC
Confidence 4569999999999999999 89999999975
No 251
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=93.90 E-value=0.0088 Score=53.36 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=4.7
Q ss_pred CCcccchhhhHHhhhhCCC--CCcccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSRN 43 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~~ 43 (441)
+++|+||.+|++.|+++|+ .++|+||||+..
T Consensus 51 ~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 83 (247)
T 2ra5_A 51 GLSRPTVRQAIQSLVDKGLLVRRRGVGTQVVHS 83 (247)
T ss_dssp -----------------CEEEEEC---------
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEcCceeEEecc
Confidence 4559999999999999999 899999999753
No 252
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=92.90 E-value=0.027 Score=45.64 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=26.1
Q ss_pred CcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 14 PLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
++|+||-+||++|+++|| ..+++|+||+.
T Consensus 93 vSr~tVR~AL~~Le~~GlV~~~~~~G~~Vt~ 123 (150)
T 2v7f_A 93 AGGSIIRKALQQLEAAGFVEKVPGKGRVITP 123 (150)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEETTTEEEECH
T ss_pred cchHHHHHHHHHHHHCCCEEEeCCCceEECC
Confidence 559999999999999999 66899999975
No 253
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=91.64 E-value=0.055 Score=47.24 Aligned_cols=30 Identities=7% Similarity=-0.037 Sum_probs=27.5
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
|++|+||-.|+..|+.+|+ .++|+|+||+.
T Consensus 50 gVSRtpVREAl~~L~~eGlv~~~~~~G~~V~~ 81 (222)
T 3ihu_A 50 GVGRNSVREALQRLAAEGIVDLQRHRGAVIRR 81 (222)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECSTTCEEECC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCCeEEec
Confidence 4569999999999999999 89999999975
No 254
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=91.03 E-value=0.048 Score=47.48 Aligned_cols=30 Identities=17% Similarity=-0.046 Sum_probs=27.5
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
|++|+||-.|+..|+.+|+ .++|+|+||+.
T Consensus 46 gVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~ 77 (218)
T 3sxy_A 46 GISFTPVRDALLQLATEGLVKVVPRVGFFVTD 77 (218)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEETTTEEEECC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCCCceEEcC
Confidence 4559999999999999999 89999999975
No 255
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=90.63 E-value=0.067 Score=47.29 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=27.5
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||-.|+..|+.+|+ .++++|+||+.
T Consensus 62 gVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~ 93 (239)
T 2hs5_A 62 DVSRNTVREAFQILIEDRLVAHELNRGVFVRV 93 (239)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCCCeeEEeC
Confidence 4559999999999999999 89999999975
No 256
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=89.91 E-value=0.09 Score=46.42 Aligned_cols=30 Identities=3% Similarity=-0.086 Sum_probs=27.4
Q ss_pred CCcccchhhhHHhhhhCCC--C--Ccc--ccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--P--VPR--HCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~--~~~--~g~~v~~ 42 (441)
|++|+||-.|+..|+.+|+ . ++| +|+||+.
T Consensus 39 gVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~ 74 (239)
T 2di3_A 39 GVSRSSLREALRVLEALGTISTATGSGPRSGTIITA 74 (239)
T ss_dssp TCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECC
T ss_pred CCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeC
Confidence 4569999999999999999 7 889 9999985
No 257
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=89.32 E-value=0.1 Score=46.10 Aligned_cols=30 Identities=7% Similarity=-0.067 Sum_probs=27.0
Q ss_pred CCcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
+++|+||-.|+..|+.+|+ .++|+|++|+.
T Consensus 60 gVSr~~VReAL~~L~~~Glv~~~~~~G~~V~~ 91 (237)
T 3c7j_A 60 GVSRMPVREALRQLEAQSLLRVETHKGAVVAP 91 (237)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCCCceEEec
Confidence 4559999999999999999 88899999975
No 258
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=81.32 E-value=0.38 Score=36.50 Aligned_cols=29 Identities=3% Similarity=-0.136 Sum_probs=23.0
Q ss_pred CCcccchhhhHHhhhhCCC--CC----cccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PV----PRHCTEVS 41 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~----~~~g~~v~ 41 (441)
+.+++||.+++..|+++|+ .. ++.|++|.
T Consensus 44 gvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~ 78 (110)
T 1q1h_A 44 NIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIY 78 (110)
T ss_dssp TSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEE
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEE
Confidence 4559999999999999999 44 67888775
No 259
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=73.26 E-value=0.95 Score=30.82 Aligned_cols=28 Identities=11% Similarity=-0.112 Sum_probs=22.7
Q ss_pred CCcccchhhhHHhhhhCCC-CCccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW-PVPRHCTEV 40 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~-~~~~~g~~v 40 (441)
+..|+||.+.+..|+++|+ ....+|+|.
T Consensus 36 glsr~tv~~~l~~L~~~G~I~~~~~G~y~ 64 (67)
T 2heo_A 36 QVPKKTLNQVLYRLKKEDRVSSPSPKYWS 64 (67)
T ss_dssp CSCHHHHHHHHHHHHHTTSEEEEETTEEE
T ss_pred CcCHHHHHHHHHHHHHCCcEecCCCceEe
Confidence 3459999999999999999 446678774
No 260
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=72.36 E-value=39 Score=28.95 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=57.8
Q ss_pred CCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC
Q 013521 132 GIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST 211 (441)
Q Consensus 132 ~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~ 211 (441)
.++...|++..|+..|...+..|++.|-.|.+.+|....-.......+ .+..+.- .+.+ +.
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~-------------~i~~i~~----~~~~--~d 88 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKG-------------QLRVKRK----KVGE--ED 88 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTT-------------SCEEECS----CCCG--GG
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcC-------------CcEEEEC----CCCH--hH
Confidence 456779999999998988888888888778887887643222222223 3333322 2211 11
Q ss_pred CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEE-Ecc-cccccc
Q 013521 212 TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIV-YDS-AYAAYI 260 (441)
Q Consensus 212 ~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii-~De-~~~~~~ 260 (441)
..+..+|+. .+.+| +.-..|.+.|+ .+++|- +|+ .+++|.
T Consensus 89 L~~adLVIa-AT~d~-------~~N~~I~~~ak-~gi~VNvvD~p~~~~f~ 130 (223)
T 3dfz_A 89 LLNVFFIVV-ATNDQ-------AVNKFVKQHIK-NDQLVNMASSFSDGNIQ 130 (223)
T ss_dssp SSSCSEEEE-CCCCT-------HHHHHHHHHSC-TTCEEEC-----CCSEE
T ss_pred hCCCCEEEE-CCCCH-------HHHHHHHHHHh-CCCEEEEeCCcccCeEE
Confidence 235666664 44444 23567777777 777654 555 244444
No 261
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=68.72 E-value=16 Score=32.62 Aligned_cols=37 Identities=16% Similarity=0.446 Sum_probs=30.2
Q ss_pred CCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCc
Q 013521 132 GIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSF 168 (441)
Q Consensus 132 ~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y 168 (441)
.++...|++..|+..|...+..|++.|-.|.+.+|..
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 4556789999999999998988898898888777755
No 262
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=65.97 E-value=33 Score=33.05 Aligned_cols=97 Identities=12% Similarity=0.181 Sum_probs=59.6
Q ss_pred CCCCCcEEEcCCcHHHHHHHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC
Q 013521 132 GIEGDEIFISDGAQSDISRLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST 211 (441)
Q Consensus 132 ~~~~~~I~~t~G~~~al~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~ 211 (441)
.++...|++..|+..|...+..+++.|-.|.+.+|....-.......+ .+..+.-.... .++
T Consensus 9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~-------------~i~~~~~~~~~---~~l-- 70 (457)
T 1pjq_A 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEG-------------MLTLVEGPFDE---TLL-- 70 (457)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTT-------------SCEEEESSCCG---GGG--
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcC-------------CEEEEECCCCc---ccc--
Confidence 345568999999999999888888888888887886543221111112 23333221111 112
Q ss_pred CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEE-EEccc
Q 013521 212 TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSII-VYDSA 255 (441)
Q Consensus 212 ~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~i-i~De~ 255 (441)
.+..+|+ ..|.+|. --..+++.|+++++++ ++|+.
T Consensus 71 -~~~~lVi-~at~~~~-------~n~~i~~~a~~~~i~vn~~d~~ 106 (457)
T 1pjq_A 71 -DSCWLAI-AATDDDT-------VNQRVSDAAESRRIFCNVVDAP 106 (457)
T ss_dssp -TTCSEEE-ECCSCHH-------HHHHHHHHHHHTTCEEEETTCT
T ss_pred -CCccEEE-EcCCCHH-------HHHHHHHHHHHcCCEEEECCCc
Confidence 2455655 4666652 2567899999999987 56764
No 263
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=59.56 E-value=2.7 Score=33.74 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=23.4
Q ss_pred CcccchhhhHHhhhhCCC--CCccccccccc
Q 013521 14 PLKATVPFTMDFFLSSRW--PVPRHCTEVSR 42 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~~ 42 (441)
..++||+++++.|+++|| .+++.|++++.
T Consensus 66 vs~~tvs~~l~~Le~~Glv~r~~~~~~~lT~ 96 (155)
T 2h09_A 66 VSQPTVAKMLKRLATMGLIEMIPWRGVFLTA 96 (155)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEETTTEEEECH
T ss_pred cCHHHHHHHHHHHHHCCCEEEecCCceEECh
Confidence 459999999999999999 45567777653
No 264
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=57.99 E-value=3.7 Score=28.87 Aligned_cols=29 Identities=3% Similarity=-0.148 Sum_probs=21.8
Q ss_pred CCcccchhhhHHhhhhCCC-C----Ccccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW-P----VPRHCTEVS 41 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~-~----~~~~g~~v~ 41 (441)
+.+++||.+.++.|+++|+ . ..|+|++..
T Consensus 25 gvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~ 58 (81)
T 2htj_A 25 AVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWF 58 (81)
T ss_dssp TSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEE
T ss_pred CcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEE
Confidence 3459999999999999999 2 345555544
No 265
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=48.99 E-value=5.3 Score=36.70 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=25.2
Q ss_pred CcccchhhhHHhhhhCCC---CCccccccccc
Q 013521 14 PLKATVPFTMDFFLSSRW---PVPRHCTEVSR 42 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~---~~~~~g~~v~~ 42 (441)
.+|.||.++.+.|+++|+ +++|+||.+..
T Consensus 31 vSr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~ 62 (323)
T 3rkx_A 31 ISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQ 62 (323)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEETTTEEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCeEEEeCCCeEEEec
Confidence 349999999999999999 67899998754
No 266
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=44.50 E-value=13 Score=26.33 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCcEEEEccc
Q 013521 236 LKKLVEFAKANGSIIVYDSA 255 (441)
Q Consensus 236 ~~~i~~~a~~~~~~ii~De~ 255 (441)
-++|.+.|++||+.|++|-.
T Consensus 29 A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 67899999999999999964
No 267
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=44.46 E-value=32 Score=36.02 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=23.8
Q ss_pred ccccCCCHHHHHHHHHHHHHcCcEEE
Q 013521 226 PTGHAATWQQLKKLVEFAKANGSIIV 251 (441)
Q Consensus 226 PtG~~~~~~~~~~i~~~a~~~~~~ii 251 (441)
|.|-.++++++++|++.|+++++-||
T Consensus 392 ~~~g~YT~~direIv~YA~~rgI~VI 417 (858)
T 1c7s_A 392 VYGGFFSRQDYIDIIKYAQARQIEVI 417 (858)
T ss_dssp CEECCBCHHHHHHHHHHHHTTTCEEE
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 45678999999999999999999998
No 268
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=43.07 E-value=17 Score=34.84 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=25.3
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEE
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIV 251 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii 251 (441)
++|.|..++++++++|++.|+++|+-||
T Consensus 85 ~~~~~~~YT~~di~eIv~YA~~rgI~VI 112 (442)
T 2yl5_A 85 DDPNGTALTQAEVTELIEYAKSKDIGLI 112 (442)
T ss_dssp CCTTCSCBCHHHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCeee
Confidence 3467889999999999999999999998
No 269
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=42.86 E-value=84 Score=27.04 Aligned_cols=124 Identities=13% Similarity=0.121 Sum_probs=64.4
Q ss_pred HHHHHHHHHhh---hCCCCCCcEEEcCCcHHHHH--HHHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccce
Q 013521 119 LRTAIADKFYK---DMGIEGDEIFISDGAQSDIS--RLQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRN 193 (441)
Q Consensus 119 lr~~ia~~l~~---~~~~~~~~I~~t~G~~~al~--~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~ 193 (441)
.|..+|+-+.+ .+++.|.+.++=-|+-.+.. .+...+.|...|...+.+-.....+.+.+... .+
T Consensus 58 ~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~----------~n 127 (233)
T 4df3_A 58 YRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR----------RN 127 (233)
T ss_dssp TTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC----------TT
T ss_pred CchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh----------cC
Confidence 44456665543 45677877775555555444 36677888778888777766555544444321 14
Q ss_pred eEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccc
Q 013521 194 IVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYA 257 (441)
Q Consensus 194 v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~ 257 (441)
+..+-.+........ ......++|+...+ .|- ....-++++..+.+.-|.++|++..-.
T Consensus 128 i~~V~~d~~~p~~~~-~~~~~vDvVf~d~~-~~~---~~~~~l~~~~r~LKpGG~lvI~ik~r~ 186 (233)
T 4df3_A 128 IFPILGDARFPEKYR-HLVEGVDGLYADVA-QPE---QAAIVVRNARFFLRDGGYMLMAIKARS 186 (233)
T ss_dssp EEEEESCTTCGGGGT-TTCCCEEEEEECCC-CTT---HHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred eeEEEEeccCccccc-cccceEEEEEEecc-CCh---hHHHHHHHHHHhccCCCEEEEEEeccc
Confidence 455544332111111 11245677664433 221 112234444445555677777765443
No 270
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=41.11 E-value=62 Score=28.81 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCcEEEEcc
Q 013521 233 WQQLKKLVEFAKANGSIIVYDS 254 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De 254 (441)
.+.+++++++|.++|++||.|-
T Consensus 64 ~~~ld~~v~~a~~~Gi~Vild~ 85 (302)
T 1bqc_A 64 PSDVANVISLCKQNRLICMLEV 85 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEe
Confidence 5889999999999999999983
No 271
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=40.97 E-value=11 Score=26.59 Aligned_cols=28 Identities=4% Similarity=-0.280 Sum_probs=20.8
Q ss_pred CcccchhhhHHhhhhCCC-CC--cccccccc
Q 013521 14 PLKATVPFTMDFFLSSRW-PV--PRHCTEVS 41 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~-~~--~~~g~~v~ 41 (441)
..|.||.+++..|+++|+ .+ ...|+|..
T Consensus 39 vsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i 69 (81)
T 1qbj_A 39 TPKKEINRVLYSLAKKGKLQKEAGTPPLWKI 69 (81)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEESSSSCEEEE
T ss_pred cCHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Confidence 459999999999999999 22 22356654
No 272
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*
Probab=39.66 E-value=18 Score=34.64 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=24.7
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEE
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIV 251 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii 251 (441)
+|.|..++++++++|++.|+++|+-||
T Consensus 83 ~~~~~~YT~~di~eIv~YA~~rgI~VI 109 (434)
T 2yl6_A 83 DPNGNHLTESQMTDLINYAKDKGIGLI 109 (434)
T ss_dssp CTTCSCEEHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCEEE
Confidence 356789999999999999999999998
No 273
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=39.34 E-value=8.6 Score=26.65 Aligned_cols=29 Identities=7% Similarity=-0.143 Sum_probs=24.7
Q ss_pred CCcccchhhhHHhhhhCCC-CCcccccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW-PVPRHCTEVS 41 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~-~~~~~g~~v~ 41 (441)
|.-|..|.+|+..|+.+|. ..++++||.-
T Consensus 45 GvdKKeVdKaik~LKkEgkI~SPkRCyw~~ 74 (80)
T 2lnb_A 45 QAPKRELNQVLYRMKKELKVSLTSPATWCL 74 (80)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCccCCCCceeeC
Confidence 3447789999999999999 8889999864
No 274
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=38.21 E-value=19 Score=26.16 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCcEEEEccc
Q 013521 235 QLKKLVEFAKANGSIIVYDSA 255 (441)
Q Consensus 235 ~~~~i~~~a~~~~~~ii~De~ 255 (441)
.-++|.++|+++|+.|++|-.
T Consensus 28 ~A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 28 CALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHHcCCCEEECHH
Confidence 367899999999999999964
No 275
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=38.20 E-value=34 Score=31.31 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=32.3
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccC
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD 262 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~ 262 (441)
.||.|-..+.+++.++++.|+++|+.|+.|--|+++..+
T Consensus 50 ~~P~~g~~~~~~~~~~~~~A~~~GlkV~ld~Hysd~Wad 88 (332)
T 1hjs_A 50 VNPADGNYNLDYNIAIAKRAKAAGLGVYIDFHYSDTWAD 88 (332)
T ss_dssp SSCTTCTTSHHHHHHHHHHHHHTTCEEEEEECCSSSCCB
T ss_pred eCCCCCcCCHHHHHHHHHHHHHCCCEEEEEeccCCCcCC
Confidence 567788888899999999999999999999666655433
No 276
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=36.92 E-value=60 Score=30.15 Aligned_cols=59 Identities=14% Similarity=0.265 Sum_probs=36.6
Q ss_pred ceeEEeecCCCCCccCCCCCCCCc--cEEE-----EcCCCCccccCCCHHHHHHHHHHHHHcCcEEE
Q 013521 192 RNIVYMNCRPENNFFPDLSTTSRT--DIIF-----FCSPNNPTGHAATWQQLKKLVEFAKANGSIIV 251 (441)
Q Consensus 192 ~~v~~v~~~~~~~~~~~~~~~~~~--~~v~-----i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii 251 (441)
.++..+.+.++.+|..+....+.. ..+. ..+ ..+.+-.++++++++|++.|+++|+-||
T Consensus 47 lN~lH~HltDdq~~rle~~~~~~~~~~~~~~~~g~~~~-~~~~~g~YT~~di~eiv~YA~~rgI~VI 112 (367)
T 1yht_A 47 GNFLHLHFSDHENYAIESHLLNQRAENAVQGKDGIYIN-PYTGKPFLSYRQLDDIKAYAKAKGIELI 112 (367)
T ss_dssp CCEEEEECBSSSCBCBCBTTTTBCGGGSEECTTSCEEC-TTTCCEEBCHHHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEEEEcCCCceeeecchhhhhhhhccccCCCcCC-CCCCCCCcCHHHHHHHHHHHHHcCCEEE
Confidence 467777776666776543321111 0111 011 1223457999999999999999999998
No 277
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=36.76 E-value=18 Score=26.42 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCcEEEEccc
Q 013521 235 QLKKLVEFAKANGSIIVYDSA 255 (441)
Q Consensus 235 ~~~~i~~~a~~~~~~ii~De~ 255 (441)
.-++|.+.|++||+.|++|..
T Consensus 43 ~A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 43 RAKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp HHHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHHcCCeEEECHH
Confidence 367899999999999999965
No 278
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=35.89 E-value=25 Score=33.94 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
+.++++++++-|+++|+.||.|-++...
T Consensus 75 t~~df~~lv~~aH~~Gi~VilD~V~NH~ 102 (496)
T 4gqr_A 75 NEDEFRNMVTRCNNVGVRIYVDAVINHM 102 (496)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCcC
Confidence 6899999999999999999999887754
No 279
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=35.81 E-value=19 Score=26.35 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCcEEEEccc
Q 013521 235 QLKKLVEFAKANGSIIVYDSA 255 (441)
Q Consensus 235 ~~~~i~~~a~~~~~~ii~De~ 255 (441)
.-++|.++|+++|+.|++|-.
T Consensus 28 ~A~~I~e~A~e~gVPi~e~~~ 48 (98)
T 3c01_E 28 RALAVRAYAEKVGVPVIVDIK 48 (98)
T ss_dssp HHHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHHcCCCeecCHH
Confidence 367899999999999999964
No 280
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=34.18 E-value=21 Score=31.69 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=45.1
Q ss_pred CCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCCCCC---CCCccEEEEcCCCCccccCCC
Q 013521 156 GSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLST---TSRTDIIFFCSPNNPTGHAAT 232 (441)
Q Consensus 156 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~---~~~~~~v~i~~p~NPtG~~~~ 232 (441)
..|++|.+-- |.++.......+ .++..+..++..+..++... .++.+.+++ ||+++-
T Consensus 139 ~~g~kV~vIG--~fP~i~~~~~~~------------~~l~V~E~~p~~g~~p~~~~~~~lp~~D~vii------Tgstlv 198 (270)
T 3l5o_A 139 VKGKKVGVVG--HFPHLESLLEPI------------CDLSILEWSPEEGDYPLPASEFILPECDYVYI------TCASVV 198 (270)
T ss_dssp TTTSEEEEES--CCTTHHHHHTTT------------SEEEEEESSCCTTCEEGGGHHHHGGGCSEEEE------ETHHHH
T ss_pred cCCCEEEEEC--CchhHHHHHhcC------------CCEEEEECCCCCCCCChhHHHHhhccCCEEEE------Eeehhh
Confidence 3577888774 334433333333 37777887776543333221 478899999 666655
Q ss_pred HHHHHHHHHHHHHcC
Q 013521 233 WQQLKKLVEFAKANG 247 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~ 247 (441)
...+.+|+++|+...
T Consensus 199 N~Tl~~lL~~~~~a~ 213 (270)
T 3l5o_A 199 DKTLPRLLELSRNAR 213 (270)
T ss_dssp HTCHHHHHHHTTTSS
T ss_pred cCCHHHHHhhCCCCC
Confidence 555999999997543
No 281
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=34.09 E-value=27 Score=35.90 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
+.++++++++.||++|+-||.|-+|...
T Consensus 253 ~~~efk~lV~~~H~~Gi~VilDvV~NH~ 280 (714)
T 2ya0_A 253 RIAEFKNLINEIHKRGMGAILDVVYNHT 280 (714)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTBC
T ss_pred hHHHHHHHHHHHHHCCCEEEEEeccCcc
Confidence 4789999999999999999999988743
No 282
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=33.98 E-value=10 Score=27.89 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=16.1
Q ss_pred cccchhhhHHhhhhCCC
Q 013521 15 LKATVPFTMDFFLSSRW 31 (441)
Q Consensus 15 ~~~Tv~~a~~~l~~~g~ 31 (441)
.++||++.++.|++.||
T Consensus 66 s~sTVt~~L~rLe~KGl 82 (99)
T 2k4b_A 66 SLATVKTLLGRLVKKEM 82 (99)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred CHhhHHHHHHHHHHCCC
Confidence 47999999999999999
No 283
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=33.43 E-value=13 Score=26.83 Aligned_cols=26 Identities=0% Similarity=0.072 Sum_probs=20.0
Q ss_pred CCcccchhhhHHhhhhCCC-CCccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW-PVPRHCT 38 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~-~~~~~g~ 38 (441)
+.+++||++.+..|++.|+ .+...|.
T Consensus 47 ~is~~tvs~~L~~L~~~Glv~~~~~g~ 73 (98)
T 3jth_A 47 QLSQSALSQHLAWLRRDGLVTTRKEAQ 73 (98)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCTT
T ss_pred CcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3458999999999999999 4444443
No 284
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=33.40 E-value=16 Score=26.58 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=19.8
Q ss_pred CCcccchhhhHHhhhhCCC-CCccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW-PVPRHCT 38 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~-~~~~~g~ 38 (441)
+.+++||++.+..|++.|+ .+...|.
T Consensus 47 ~is~~tvs~~L~~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 47 GIGQPTLSQQLGVLRESGIVETRRNIK 73 (102)
T ss_dssp TCCTTHHHHHHHHHHHTTSEEEECSSS
T ss_pred CcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3458999999999999999 3333443
No 285
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=32.99 E-value=48 Score=30.31 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=32.3
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccccC
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYITD 262 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~~ 262 (441)
.||.|-..+.++..++++.|+++|+.++.|--|++...+
T Consensus 50 v~P~~g~~d~~~~~~~~~~ak~~Gl~v~ld~hysd~wad 88 (334)
T 1fob_A 50 VNPSDGSYDLDYNLELAKRVKAAGMSLYLDLHLSDTWAD 88 (334)
T ss_dssp SCCTTCTTCHHHHHHHHHHHHHTTCEEEEEECCSSSCCB
T ss_pred ECCCCCccCHHHHHHHHHHHHHCCCEEEEEeccCCCCCC
Confidence 567777888999999999999999999999767665443
No 286
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=32.88 E-value=12 Score=26.94 Aligned_cols=25 Identities=4% Similarity=-0.112 Sum_probs=19.6
Q ss_pred CcccchhhhHHhhhhCCC-CCcccccc
Q 013521 14 PLKATVPFTMDFFLSSRW-PVPRHCTE 39 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~-~~~~~g~~ 39 (441)
..++||.+.+..|++.|+ .+.+ |.|
T Consensus 55 is~~tv~~~L~~L~~~Glv~~~~-g~y 80 (96)
T 1y0u_A 55 LSKKQLDYHLKVLEAGFCIERVG-ERW 80 (96)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEET-TEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEEC-CEE
Confidence 459999999999999999 3333 544
No 287
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=32.67 E-value=1.1e+02 Score=25.95 Aligned_cols=105 Identities=14% Similarity=0.097 Sum_probs=58.3
Q ss_pred CcEEEcCCc-----H-HHHHHHHHhcCCCCEEEEeCCCchhhH---hHHHHhccccccccccCccceeEEeecCCCCCcc
Q 013521 136 DEIFISDGA-----Q-SDISRLQMLLGSNVTVAVQDPSFPAYI---DTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFF 206 (441)
Q Consensus 136 ~~I~~t~G~-----~-~al~~l~~l~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~ 206 (441)
..|.+..|. | +++..+..+...|..+++..|.-..-. .+....| .....+++....++.
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G------------~~~~a~~v~~~~di~ 95 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNG------------NAIEAINISKASEIM 95 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTT------------BCCEEEEESSGGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcC------------CceeeEEeCCHHHHH
Confidence 355554443 3 355556666666777888877654321 2222233 244555554332322
Q ss_pred CCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 207 PDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 207 ~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
..+ ..+...|+|.-.|. ++.+.++.+.+++ ..|+.||+=.--.+|.
T Consensus 96 ~~i--~~~~dvV~IDEaQF-----f~~~~v~~l~~la-~~gi~Vi~~GLd~DF~ 141 (219)
T 3e2i_A 96 THD--LTNVDVIGIDEVQF-----FDDEIVSIVEKLS-ADGHRVIVAGLDMDFR 141 (219)
T ss_dssp GSC--CTTCSEEEECCGGG-----SCTHHHHHHHHHH-HTTCEEEEEEESBCTT
T ss_pred HHH--hcCCCEEEEechhc-----CCHHHHHHHHHHH-HCCCEEEEeecccccc
Confidence 212 24677888876665 6667788888888 6899999876655554
No 288
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=32.39 E-value=14 Score=28.88 Aligned_cols=18 Identities=6% Similarity=0.006 Sum_probs=16.7
Q ss_pred CcccchhhhHHhhhhCCC
Q 013521 14 PLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~ 31 (441)
..++||+++++.|++.||
T Consensus 34 vs~~tvs~~l~~Le~~Gl 51 (142)
T 1on2_A 34 VHPSSVTKMVQKLDKDEY 51 (142)
T ss_dssp SCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 459999999999999999
No 289
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=32.17 E-value=12 Score=26.16 Aligned_cols=17 Identities=6% Similarity=-0.085 Sum_probs=16.1
Q ss_pred cccchhhhHHhhhhCCC
Q 013521 15 LKATVPFTMDFFLSSRW 31 (441)
Q Consensus 15 ~~~Tv~~a~~~l~~~g~ 31 (441)
.++||++.++.|++.||
T Consensus 40 s~~Tv~~~l~rL~~kGl 56 (82)
T 1p6r_A 40 SPKTIQTMLLRLIKKGA 56 (82)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHCCC
Confidence 48999999999999999
No 290
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=31.75 E-value=13 Score=28.85 Aligned_cols=27 Identities=4% Similarity=-0.141 Sum_probs=20.1
Q ss_pred CcccchhhhHHhhhhCCC-CCccccccc
Q 013521 14 PLKATVPFTMDFFLSSRW-PVPRHCTEV 40 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~-~~~~~g~~v 40 (441)
..++||+++++.|+++|| .+...++++
T Consensus 43 is~~tv~~~l~~Le~~Gli~r~~~~~~L 70 (139)
T 2x4h_A 43 IAPSSVFEEVSHLEEKGLVKKKEDGVWI 70 (139)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CChHHHHHHHHHHHHCCCEEecCCeEEE
Confidence 458999999999999999 333344443
No 291
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=30.00 E-value=38 Score=32.44 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
+.++++++++-|+++|+-||.|-++....
T Consensus 63 t~~dfk~Lv~~aH~~Gi~VilD~V~NH~~ 91 (448)
T 1g94_A 63 NRAQFIDMVNRCSAAGVDIYVDTLINHMA 91 (448)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECSEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeecccc
Confidence 48999999999999999999999887543
No 292
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=29.90 E-value=44 Score=31.48 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
+.++++++++-|+++|+-||.|-++....
T Consensus 67 t~~d~~~lv~~~h~~Gi~VilD~V~NH~~ 95 (405)
T 1ht6_A 67 NAAELKSLIGALHGKGVQAIADIVINHRC 95 (405)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCccc
Confidence 57999999999999999999999887543
No 293
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=29.89 E-value=17 Score=25.18 Aligned_cols=18 Identities=6% Similarity=-0.123 Sum_probs=16.5
Q ss_pred CcccchhhhHHhhhhCCC
Q 013521 14 PLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~ 31 (441)
..++||.+.+..|+.+|+
T Consensus 43 vs~~tV~~~L~~L~~~G~ 60 (77)
T 1qgp_A 43 TPKKEINRVLYSLAKKGK 60 (77)
T ss_dssp CCHHHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 448999999999999999
No 294
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=29.75 E-value=18 Score=27.27 Aligned_cols=19 Identities=5% Similarity=0.022 Sum_probs=17.2
Q ss_pred CCcccchhhhHHhhhhCCC
Q 013521 13 TPLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~ 31 (441)
+..++||++.+..|++.|+
T Consensus 45 gis~stvs~~L~~L~~~Gl 63 (118)
T 2jsc_A 45 GLTRSNVSNHLSCLRGCGL 63 (118)
T ss_dssp SSCHHHHHHHHHHHTTTTS
T ss_pred CcCHHHHHHHHHHHHHCCc
Confidence 3459999999999999999
No 295
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=29.44 E-value=1.5e+02 Score=26.32 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=43.7
Q ss_pred cEEEcCCcH---HHHHHHHHhcCCC-CEEEEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCCCCCccCCCC
Q 013521 137 EIFISDGAQ---SDISRLQMLLGSN-VTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS 210 (441)
Q Consensus 137 ~I~~t~G~~---~al~~l~~l~~~g-d~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 210 (441)
.|++..|+. +++......-+-| |.|++..|.|... ..+.+.+.. + .+
T Consensus 72 pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~----------------i-----------a~ 124 (292)
T 2ojp_A 72 PVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKA----------------I-----------AE 124 (292)
T ss_dssp CEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHH----------------H-----------HT
T ss_pred cEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHH----------------H-----------HH
Confidence 477777763 4444444444445 8999999998532 222222210 0 01
Q ss_pred CCCCccEEEEcCCCCccccCCCHHHHHHHH
Q 013521 211 TTSRTDIIFFCSPNNPTGHAATWQQLKKLV 240 (441)
Q Consensus 211 ~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~ 240 (441)
. -+..++++++|. .||..++.+.+.+|+
T Consensus 125 a-~~lPiilYn~P~-~tg~~l~~~~~~~La 152 (292)
T 2ojp_A 125 H-TDLPQILYNVPS-RTGCDLLPETVGRLA 152 (292)
T ss_dssp T-CSSCEEEECCHH-HHSCCCCHHHHHHHH
T ss_pred h-cCCCEEEEeCcc-hhccCCCHHHHHHHH
Confidence 1 123466776666 489999988777775
No 296
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=29.05 E-value=18 Score=27.73 Aligned_cols=28 Identities=4% Similarity=-0.147 Sum_probs=20.1
Q ss_pred CCcccchhhhHHhhhhCCC--CCcc-ccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW--PVPR-HCTEV 40 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~--~~~~-~g~~v 40 (441)
+..++||.+.+..|++.|+ +++| .|.|.
T Consensus 37 ~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~ 67 (129)
T 2y75_A 37 NLSEHYLEQLVSPLRNAGLVKSIRGAYGGYV 67 (129)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEC----CCEE
T ss_pred CcCHHHHHHHHHHHHHCCceEecCCCCCceE
Confidence 3458999999999999999 5555 35444
No 297
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=28.94 E-value=46 Score=31.73 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
+.++++++++-|+++|+-||.|-++...
T Consensus 68 t~~df~~lv~~aH~~Gi~VilD~V~NH~ 95 (441)
T 1lwj_A 68 SEREFKEMIEAFHDSGIKVVLDLPIHHT 95 (441)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECTTBC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 4799999999999999999999887643
No 298
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Probab=28.73 E-value=42 Score=33.08 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=24.6
Q ss_pred CccccCCCHHHHHHHHHHHHHcCcEEE
Q 013521 225 NPTGHAATWQQLKKLVEFAKANGSIIV 251 (441)
Q Consensus 225 NPtG~~~~~~~~~~i~~~a~~~~~~ii 251 (441)
.|.|-.++++++++|++.|+++|+-||
T Consensus 215 ~~~~g~YT~~di~eIv~YA~~rgI~VI 241 (543)
T 3rcn_A 215 RPHGGFYTQDDLREIVAFAADRHITVI 241 (543)
T ss_dssp CCEECCBCHHHHHHHHHHHHHTTCEEE
T ss_pred CccCCCcCHHHHHHHHHHHHHcCCEEe
Confidence 456788999999999999999999998
No 299
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=28.42 E-value=48 Score=31.55 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
+.++++++++-|+++|+-||.|-++...
T Consensus 85 t~~df~~lv~~~H~~Gi~VilD~V~NH~ 112 (435)
T 1mxg_A 85 SKEELVRLIQTAHAYGIKVIADVVINHR 112 (435)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 5799999999999999999999887643
No 300
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=28.25 E-value=1.6e+02 Score=26.20 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=48.0
Q ss_pred cEEEcCCc---HHHHHHHHHhcCCC-CEEEEeCCCchhh--HhHHHHhccccccccccCccceeEEeecCCCCCccCCCC
Q 013521 137 EIFISDGA---QSDISRLQMLLGSN-VTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDLS 210 (441)
Q Consensus 137 ~I~~t~G~---~~al~~l~~l~~~g-d~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 210 (441)
.|++..|+ .+++......-+-| |.|++..|.|... ..+.+.+. .+.
T Consensus 72 pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~----------------------------~ia 123 (291)
T 3a5f_A 72 PVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFK----------------------------AVS 123 (291)
T ss_dssp CEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-----------------------------CTG
T ss_pred cEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHH----------------------------HHH
Confidence 47777776 34455444333334 8999999988542 22222111 111
Q ss_pred CCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEcc
Q 013521 211 TTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDS 254 (441)
Q Consensus 211 ~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De 254 (441)
+.-+..++++++|.. ||..++.+.+.+|++ --++.=|=|.
T Consensus 124 ~a~~lPiilYn~P~~-tg~~l~~~~~~~La~---~pnivgiK~s 163 (291)
T 3a5f_A 124 DAVSTPIIIYNVPGR-TGLNITPGTLKELCE---DKNIVAVXEA 163 (291)
T ss_dssp GGCCSCEEEEECHHH-HSCCCCHHHHHHHTT---STTEEEEEEC
T ss_pred HhcCCCEEEEeCccc-cCCCCCHHHHHHHHc---CCCEEEEeCC
Confidence 111345677777764 899999887777753 2344444443
No 301
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=27.90 E-value=36 Score=34.93 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
.++++++++-||++|+-||.|-++....
T Consensus 315 ~~dfk~LV~~aH~~GI~VIlDvV~NHt~ 342 (718)
T 2e8y_A 315 KTELKQMINTLHQHGLRVILDVVFNHVY 342 (718)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeccccc
Confidence 5899999999999999999999887543
No 302
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=27.87 E-value=52 Score=32.26 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
+.++++++++-||++|+-||.|-++....
T Consensus 91 t~~dfk~Lv~~aH~~GI~VilD~V~NHt~ 119 (527)
T 1gcy_A 91 SDAQLRQAASALGGAGVKVLYDVVPNHMN 119 (527)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeecCcC
Confidence 48999999999999999999999887543
No 303
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=27.69 E-value=34 Score=26.27 Aligned_cols=18 Identities=11% Similarity=-0.134 Sum_probs=16.6
Q ss_pred CcccchhhhHHhhhhCCC
Q 013521 14 PLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~ 31 (441)
..++||+++++.|++.||
T Consensus 63 ~~~~tvs~~l~~L~~~gl 80 (142)
T 2bv6_A 63 LDTGTVSPLLKRMEQVDL 80 (142)
T ss_dssp CCTTTHHHHHHHHHHTTS
T ss_pred CChhhHHHHHHHHHHCCC
Confidence 348999999999999999
No 304
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=27.35 E-value=20 Score=25.99 Aligned_cols=19 Identities=16% Similarity=0.081 Sum_probs=17.2
Q ss_pred CCcccchhhhHHhhhhCCC
Q 013521 13 TPLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~ 31 (441)
+..++||++.++.|++.||
T Consensus 47 ~is~~tv~~~l~~L~~~g~ 65 (109)
T 2d1h_A 47 KLSKTTVENSLKKLIELGL 65 (109)
T ss_dssp TCCHHHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHHHHHHHHCCC
Confidence 3459999999999999999
No 305
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=26.94 E-value=38 Score=36.39 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
.++++++++.||++|+-||.|-+|...
T Consensus 561 ~~efk~lV~~~H~~GI~VIlDvV~NHt 587 (1014)
T 2ya1_A 561 IAEFKNLINEIHKRGMGAILDVVYNHT 587 (1014)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCC
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecccc
Confidence 689999999999999999999988654
No 306
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=26.72 E-value=44 Score=32.28 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
+.++++++++-||++|+-||.|-++...
T Consensus 79 t~~df~~lv~~aH~~Gi~VilD~V~NH~ 106 (480)
T 1ud2_A 79 TKAQLERAIGSLKSNDINVYGDVVMNHK 106 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCcc
Confidence 4899999999999999999999988754
No 307
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=26.31 E-value=45 Score=32.22 Aligned_cols=28 Identities=11% Similarity=0.028 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
+.++++++++-|+++|+-||.|-++...
T Consensus 77 t~~df~~lv~~aH~~Gi~VilD~V~NH~ 104 (483)
T 3bh4_A 77 TKSELQDAIGSLHSRNVQVYGDVVLNHK 104 (483)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCcc
Confidence 4899999999999999999999987754
No 308
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=26.24 E-value=54 Score=31.52 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
+.++++++++-|+++|+-||.|-++...
T Consensus 95 t~~df~~lv~~~h~~Gi~VilD~V~NH~ 122 (475)
T 2z1k_A 95 GNEALRHLLEVAHAHGVRVILDGVFNHT 122 (475)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 3799999999999999999999887643
No 309
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=26.21 E-value=45 Score=32.59 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
+.++++++++.||++|+-||.|-++...
T Consensus 80 t~~dfk~Lv~~aH~~Gi~VilD~V~NH~ 107 (515)
T 1hvx_A 80 TKAQYLQAIQAAHAAGMQVYADVVFDHK 107 (515)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecCCc
Confidence 4899999999999999999999987754
No 310
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=26.09 E-value=19 Score=25.72 Aligned_cols=18 Identities=0% Similarity=-0.143 Sum_probs=16.7
Q ss_pred CcccchhhhHHhhhhCCC
Q 013521 14 PLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~ 31 (441)
..++||++.+..|++.|+
T Consensus 50 is~~tvs~~l~~L~~~gl 67 (99)
T 3cuo_A 50 LSASATSQHLARMRDEGL 67 (99)
T ss_dssp CCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 458999999999999999
No 311
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=25.86 E-value=51 Score=32.18 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=37.3
Q ss_pred ceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEE
Q 013521 192 RNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVY 252 (441)
Q Consensus 192 ~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 252 (441)
.++..+.+.++.+|..+....+ .+.-+ -...|.|..++++++++|++.|+++|+-||=
T Consensus 176 lN~lh~HltDdq~wr~ei~~~P--~Lt~~-Ga~~~~~~~YT~~di~eiv~yA~~rgI~VIP 233 (507)
T 2gjx_A 176 LNVFHWHLVDDPSFPYESFTFP--ELMRK-GSYNPVTHIYTAQDVKEVIEYARLRGIRVLA 233 (507)
T ss_dssp CCEEEEECCCSSCCCBCCSSCT--HHHHH-HSSCTTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEEecccCeeeeccccc--hhhhc-cccCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 3666666666566655443322 11000 0123556789999999999999999999984
No 312
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=25.82 E-value=59 Score=31.43 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAA 258 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~ 258 (441)
+.++++++++-|+++|+-||.|-++..
T Consensus 80 t~~d~~~Lv~~aH~~Gi~VilD~V~NH 106 (488)
T 1wza_A 80 TLEDFHKLVEAAHQRGIKVIIDLPINH 106 (488)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCCSB
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 479999999999999999999988764
No 313
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=31.70 E-value=14 Score=26.37 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCcEEEEccccc
Q 013521 236 LKKLVEFAKANGSIIVYDSAYA 257 (441)
Q Consensus 236 ~~~i~~~a~~~~~~ii~De~~~ 257 (441)
-++|.+.|++||+.|++|-.-.
T Consensus 29 A~~I~e~A~e~~VPi~e~~~LA 50 (87)
T 3b1s_B 29 AQKIVEIAENYSIPVVRKPELA 50 (87)
Confidence 5688999999999999997544
No 314
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=25.70 E-value=44 Score=29.73 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDS 254 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De 254 (441)
..+.+++++++|+++|++||.|-
T Consensus 62 ~~~~ld~~v~~a~~~Gi~Vild~ 84 (294)
T 2whl_A 62 DIDTIREVIELAEQNKMVAVVEV 84 (294)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEe
Confidence 47889999999999999999984
No 315
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=25.65 E-value=47 Score=32.10 Aligned_cols=28 Identities=29% Similarity=0.181 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
+.++++++++-|+++|+-||.|-++...
T Consensus 81 t~~df~~Lv~~aH~~Gi~VilD~V~NH~ 108 (485)
T 1wpc_A 81 TRSQLQAAVTSLKNNGIQVYGDVVMNHK 108 (485)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 4799999999999999999999887754
No 316
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=25.52 E-value=1.1e+02 Score=26.03 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=53.5
Q ss_pred CCcEEEcCCc------HHHHHHHHHhcCCCCEEEEeCCCchhh---HhHHHHhccccccccccCccceeEEeecCCCCCc
Q 013521 135 GDEIFISDGA------QSDISRLQMLLGSNVTVAVQDPSFPAY---IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNF 205 (441)
Q Consensus 135 ~~~I~~t~G~------~~al~~l~~l~~~gd~Vlv~~p~y~~~---~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~ 205 (441)
...|.+-.|. ++++..+......|..|++..|.-..- ..+....| ..+..++.....++
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g------------~~~~a~~~~~~~~~ 94 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNG------------LKVKAVPVSASKDI 94 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------------CCEEECSSGGGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcC------------CeeEEeecCCHHHH
Confidence 3456544444 455666667777788888887765331 12222233 23333444332221
Q ss_pred cCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 206 FPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 206 ~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
...+ ..+.++|+|.--|. ++++.++.+.+++. .++.||+=.--.+|
T Consensus 95 ~~~~--~~~~dvViIDEaQF-----~~~~~V~~l~~l~~-~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 95 FKHI--TEEMDVIAIDEVQF-----FDGDIVEVVQVLAN-RGYRVIVAGLDQDF 140 (214)
T ss_dssp GGGC--CSSCCEEEECCGGG-----SCTTHHHHHHHHHH-TTCEEEEEECSBCT
T ss_pred HHHH--hcCCCEEEEECccc-----CCHHHHHHHHHHhh-CCCEEEEEeccccc
Confidence 1111 12478888876666 67777766666555 48888876554444
No 317
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=25.50 E-value=53 Score=31.62 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
+.++++++++-||++|+-||.|-++...
T Consensus 96 t~~df~~lv~~~H~~Gi~VilD~V~NH~ 123 (478)
T 2guy_A 96 TADDLKALSSALHERGMYLMVDVVANHM 123 (478)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcccC
Confidence 3799999999999999999999887643
No 318
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=25.12 E-value=50 Score=31.83 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
+.++++++++-|+++|+-||.|-++....
T Consensus 73 t~~d~~~lv~~~h~~Gi~VilD~V~NH~~ 101 (471)
T 1jae_A 73 DESAFTDMTRRCNDAGVRIYVDAVINHMT 101 (471)
T ss_dssp EHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeccccc
Confidence 47999999999999999999999887543
No 319
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=24.90 E-value=34 Score=27.64 Aligned_cols=29 Identities=0% Similarity=-0.081 Sum_probs=23.1
Q ss_pred CcccchhhhHHhhhhCCC--CCccc--cccccc
Q 013521 14 PLKATVPFTMDFFLSSRW--PVPRH--CTEVSR 42 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~--~~~~~--g~~v~~ 42 (441)
..+++|.+.+..|...|+ +++|. |+..++
T Consensus 40 is~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar 72 (162)
T 3k69_A 40 LNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDL 72 (162)
T ss_dssp SCGGGTHHHHHHHHHTTSSEEECSTTCEEECCS
T ss_pred cCHHHHHHHHHHHHHCCCEEeecCCCCCeEecC
Confidence 348899999999999999 77777 455554
No 320
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=24.82 E-value=49 Score=32.41 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAA 258 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~ 258 (441)
+.++++++++-|+++|+-||.|-++..
T Consensus 78 t~~dfk~Lv~~aH~~Gi~VilD~V~NH 104 (549)
T 4aie_A 78 TMADMDELISKAKEHHIKIVMDLVVNH 104 (549)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 478999999999999999999988764
No 321
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=24.79 E-value=47 Score=31.42 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
+.++++++++-|+++|+-||.|-++....
T Consensus 73 ~~~d~~~lv~~~h~~Gi~VilD~V~NH~~ 101 (422)
T 1ua7_A 73 TEQEFKEMCAAAEEYGIKVIVDAVINHTT 101 (422)
T ss_dssp EHHHHHHHHHHHHTTTCEEEEEECCSBCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccCccc
Confidence 58999999999999999999999987544
No 322
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=24.76 E-value=58 Score=31.42 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
+.++++++++-||++|+-||.|-++....
T Consensus 96 t~~df~~lv~~~H~~Gi~VilD~V~NH~~ 124 (484)
T 2aaa_A 96 TADNLKSLSDALHARGMYLMVDVVPDHMG 124 (484)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECCSBCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCCcC
Confidence 36899999999999999999998887544
No 323
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=24.61 E-value=59 Score=32.39 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
+.++++++++-||++|+-||.|-++....
T Consensus 221 t~~df~~lv~~~H~~Gi~VilD~V~NH~~ 249 (588)
T 1j0h_A 221 DKETLKTLIDRCHEKGIRVMLDAVFNHCG 249 (588)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCcCc
Confidence 37999999999999999999999887543
No 324
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=24.47 E-value=25 Score=27.20 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=16.8
Q ss_pred CcccchhhhHHhhhhCCC
Q 013521 14 PLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~ 31 (441)
..++||++..+.|++.||
T Consensus 63 ~s~~tvs~~l~~L~~~Gl 80 (146)
T 3tgn_A 63 VSQAAVTKAIKSLVKEGM 80 (146)
T ss_dssp CCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 459999999999999999
No 325
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=24.40 E-value=25 Score=27.89 Aligned_cols=28 Identities=4% Similarity=-0.079 Sum_probs=20.7
Q ss_pred CcccchhhhHHhhhhCCC--CCcccccccc
Q 013521 14 PLKATVPFTMDFFLSSRW--PVPRHCTEVS 41 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~--~~~~~g~~v~ 41 (441)
..+++|.+.+..|+..|+ +++|.|.|.-
T Consensus 42 i~~~~l~kil~~L~~~Glv~s~rG~GGy~L 71 (149)
T 1ylf_A 42 TNPVVIRKIMSYLKQAGFVYVNRGPGGAGL 71 (149)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEC---CCEEE
T ss_pred cCHHHHHHHHHHHHHCCcEEEccCCCceEe
Confidence 348899999999999999 7677776653
No 326
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=24.10 E-value=40 Score=25.85 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCcEEEEccc
Q 013521 236 LKKLVEFAKANGSIIVYDSA 255 (441)
Q Consensus 236 ~~~i~~~a~~~~~~ii~De~ 255 (441)
-.+|.++|++||+.|++|-.
T Consensus 73 A~~I~~~A~e~~VPi~e~~~ 92 (123)
T 2jli_A 73 VQTVRKIAEEEGVPILQRIP 92 (123)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 67899999999999999964
No 327
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=24.01 E-value=28 Score=24.91 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=16.7
Q ss_pred CcccchhhhHHhhhhCCC
Q 013521 14 PLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~ 31 (441)
..++||++..+.|++.||
T Consensus 42 i~~~tvs~~l~~Le~~Gl 59 (95)
T 2qvo_A 42 SPHSYVWLIIKKFEEAKM 59 (95)
T ss_dssp SCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHHCcC
Confidence 458999999999999999
No 328
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Probab=23.99 E-value=49 Score=29.64 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCcEEEEcc
Q 013521 233 WQQLKKLVEFAKANGSIIVYDS 254 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De 254 (441)
.+.+++++++|.++|++||.|-
T Consensus 79 ~~~ld~~v~~a~~~Gi~Vild~ 100 (303)
T 7a3h_A 79 KEKVKEAVEAAIDLDIYVIIDW 100 (303)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEe
Confidence 5789999999999999999985
No 329
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=23.77 E-value=95 Score=28.51 Aligned_cols=87 Identities=11% Similarity=0.097 Sum_probs=48.9
Q ss_pred cEEEcCCc---HHHHHHHHHhcCCC-CEEEEeCCCchh-h--HhHHHHhccccccccccCccceeEEeecCCCCCccCCC
Q 013521 137 EIFISDGA---QSDISRLQMLLGSN-VTVAVQDPSFPA-Y--IDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPDL 209 (441)
Q Consensus 137 ~I~~t~G~---~~al~~l~~l~~~g-d~Vlv~~p~y~~-~--~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 209 (441)
-|++..|+ .+++.+....-+-| |.|++..|.|.. . ..+.+.+. .+
T Consensus 94 pViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~----------------------------~I 145 (344)
T 2hmc_A 94 PVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFK----------------------------AI 145 (344)
T ss_dssp CEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHH----------------------------HH
T ss_pred cEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHH----------------------------HH
Confidence 57777775 34455443333334 889999998854 2 12222211 00
Q ss_pred CC-CCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEEccc
Q 013521 210 ST-TSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVYDSA 255 (441)
Q Consensus 210 ~~-~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~ 255 (441)
.+ ..+..++++++| .||..++.+.+.+|+ ++--++.=|=|..
T Consensus 146 A~aa~~lPiilYn~P--~tg~~l~~e~~~~L~--a~~pnIvGiKdss 188 (344)
T 2hmc_A 146 LSAAPEIPAVIYNSP--YYGFATRADLFFALR--AEHKNLVGFKEFG 188 (344)
T ss_dssp HHHSTTSCEEEEEBG--GGTBCCCHHHHHHHH--HHCTTEEEEEECS
T ss_pred HhhCCCCcEEEEecC--ccCCCcCHHHHHHHH--hcCCCEEEEEcCC
Confidence 11 123457788888 799999988777772 2223555555544
No 330
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=23.38 E-value=51 Score=30.00 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCcEEEEcc
Q 013521 233 WQQLKKLVEFAKANGSIIVYDS 254 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De 254 (441)
.+.+++++++|.++|++||.|-
T Consensus 104 ~~~ld~~v~~a~~~Gi~VilD~ 125 (327)
T 3pzt_A 104 KNKVKEAVEAAKELGIYVIIDW 125 (327)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEe
Confidence 5789999999999999999984
No 331
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=23.30 E-value=67 Score=30.46 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
+.++++++++-||++|+-||.|-++....
T Consensus 80 t~~d~~~lv~~ah~~Gi~vilD~V~NH~s 108 (424)
T 2dh2_A 80 SKEDFDSLLQSAKKKSIRVILDLTPNYRG 108 (424)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCTTTTS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCcCC
Confidence 37899999999999999999999987543
No 332
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=23.25 E-value=4e+02 Score=24.46 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEccccc
Q 013521 231 ATWQQLKKLVEFAKANGSIIVYDSAYA 257 (441)
Q Consensus 231 ~~~~~~~~i~~~a~~~~~~ii~De~~~ 257 (441)
++.++.++++++|+++|+.+.+...|.
T Consensus 103 l~~~ea~~l~~~A~~~g~~~~v~~~yr 129 (372)
T 4gmf_A 103 LHPDDISSLQTLAQEQGCCYWINTFYP 129 (372)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECSGG
T ss_pred CCHHHHHHHHHHHHHcCCEEEEcCccc
Confidence 478899999999999999999886654
No 333
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=23.22 E-value=47 Score=25.18 Aligned_cols=19 Identities=0% Similarity=0.013 Sum_probs=17.0
Q ss_pred CCcccchhhhHHhhhhCCC
Q 013521 13 TPLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~ 31 (441)
+..++||++.++.|++.||
T Consensus 58 ~~~~~tvs~~l~~L~~~gl 76 (139)
T 3bja_A 58 GCVPSNMTTMIQRMKRDGY 76 (139)
T ss_dssp SSCCTTHHHHHHHHHHTTS
T ss_pred CCChhHHHHHHHHHHHCCC
Confidence 3458999999999999999
No 334
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=23.20 E-value=41 Score=26.28 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCcEEEEccc
Q 013521 236 LKKLVEFAKANGSIIVYDSA 255 (441)
Q Consensus 236 ~~~i~~~a~~~~~~ii~De~ 255 (441)
-.+|.++|++||+.|++|-.
T Consensus 83 A~~I~e~A~e~gVPi~e~~~ 102 (137)
T 3bzs_A 83 ALQIIKLAELYDIPVIEDIP 102 (137)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 67899999999999999964
No 335
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=23.02 E-value=71 Score=28.82 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=24.5
Q ss_pred ccEEEEcCCCCccccCCCHHHHHHHHHHHHHc-CcEEEEccccc
Q 013521 215 TDIIFFCSPNNPTGHAATWQQLKKLVEFAKAN-GSIIVYDSAYA 257 (441)
Q Consensus 215 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~~~ 257 (441)
..+++++.|. ||..++.+.+.+|+ +++ ++.=|=||+-.
T Consensus 138 lPiilYn~P~--tg~~l~~~~~~~La---~~~pnIvgiK~~~~~ 176 (309)
T 3fkr_A 138 IPIMVQDAPA--SGTALSAPFLARMA---REIEQVAYFXIETPG 176 (309)
T ss_dssp SCEEEEECGG--GCCCCCHHHHHHHH---HHSTTEEEEEECSSS
T ss_pred CCEEEEeCCC--CCCCCCHHHHHHHH---hhCCCEEEEECCCcc
Confidence 3467778884 89999976655554 443 66666655543
No 336
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=22.91 E-value=1.5e+02 Score=25.77 Aligned_cols=97 Identities=8% Similarity=0.084 Sum_probs=52.4
Q ss_pred CcEEEcCCcHHHHHH--HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC-----
Q 013521 136 DEIFISDGAQSDISR--LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD----- 208 (441)
Q Consensus 136 ~~I~~t~G~~~al~~--l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~----- 208 (441)
..+++.+|++.+|-. ...|.+.|-.|++..-.-....+........+ .++..+..|-.+.-..+
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g---------~~~~~~~~Dv~~~~~v~~~~~~ 79 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG---------YDAHGVAFDVTDELAIEAAFSK 79 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT---------CCEEECCCCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---------CcEEEEEeeCCCHHHHHHHHHH
Confidence 456666677777764 46778999999887654444444443332222 25666655432110000
Q ss_pred -CCCCCCccEEEEcCC-CCcccc--CCCHHHHHHHHHH
Q 013521 209 -LSTTSRTDIIFFCSP-NNPTGH--AATWQQLKKLVEF 242 (441)
Q Consensus 209 -~~~~~~~~~v~i~~p-~NPtG~--~~~~~~~~~i~~~ 242 (441)
.++..+.+.++ +|. .++.+. -++.++++++.++
T Consensus 80 ~~~~~G~iDiLV-NNAG~~~~~~~~~~~~e~~~~~~~v 116 (255)
T 4g81_D 80 LDAEGIHVDILI-NNAGIQYRKPMVELELENWQKVIDT 116 (255)
T ss_dssp HHHTTCCCCEEE-ECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHCCCCcEEE-ECCCCCCCCChhhCCHHHHHHHHHH
Confidence 11135677644 554 233332 3688888887764
No 337
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=22.72 E-value=86 Score=27.70 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=54.0
Q ss_pred CcEEEcCCcHHHHHH--HHHhcCCCCEEEEeCCCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccCC--C--
Q 013521 136 DEIFISDGAQSDISR--LQMLLGSNVTVAVQDPSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFPD--L-- 209 (441)
Q Consensus 136 ~~I~~t~G~~~al~~--l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~~--~-- 209 (441)
..+++.+|++.+|-. ...|.+.|-.|++..-.-.......+..|. +...+..|-.+.-..+ .
T Consensus 29 gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~------------~~~~~~~Dv~~~~~v~~~~~~ 96 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGG------------GAVGIQADSANLAELDRLYEK 96 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT------------TCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC------------CeEEEEecCCCHHHHHHHHHH
Confidence 467777777778864 467789998888876555555555565652 4555555432110000 0
Q ss_pred --CCCCCccEEEEcCC-CCcccc--CCCHHHHHHHHHH
Q 013521 210 --STTSRTDIIFFCSP-NNPTGH--AATWQQLKKLVEF 242 (441)
Q Consensus 210 --~~~~~~~~v~i~~p-~NPtG~--~~~~~~~~~i~~~ 242 (441)
++..+.+.++ +|. .++.+. -++.++++++.++
T Consensus 97 ~~~~~G~iDiLV-NNAG~~~~~~~~~~~~e~w~~~~~v 133 (273)
T 4fgs_A 97 VKAEAGRIDVLF-VNAGGGSMLPLGEVTEEQYDDTFDR 133 (273)
T ss_dssp HHHHHSCEEEEE-ECCCCCCCCCTTSCCHHHHHHHHHH
T ss_pred HHHHcCCCCEEE-ECCCCCCCCChhhccHHHHHHHHHH
Confidence 1124667644 444 333332 3688888888875
No 338
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=22.51 E-value=75 Score=31.61 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
+.++++++++-||++|+-||.|-++....
T Consensus 217 t~~df~~lv~~~H~~Gi~VilD~V~NH~~ 245 (583)
T 1ea9_C 217 DKDTLKKLVDLCHERGIRVLLDAVFNHSG 245 (583)
T ss_dssp CHHHHHHHHHHHTTTTCEEEEECCCSBCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccCC
Confidence 47999999999999999999999887543
No 339
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*
Probab=22.49 E-value=55 Score=29.00 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCcEEEEcc
Q 013521 233 WQQLKKLVEFAKANGSIIVYDS 254 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De 254 (441)
.+.+++++++|.++|++||.|-
T Consensus 78 ~~~ld~~v~~a~~~Gi~vild~ 99 (293)
T 1tvn_A 78 MSRLDTVVNAAIAEDMYVIIDF 99 (293)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEc
Confidence 4678899999999999999985
No 340
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=22.46 E-value=64 Score=30.77 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAA 258 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~ 258 (441)
+.++++++++-|+++|+.||.|-++..
T Consensus 82 t~~~~~~lv~~~h~~Gi~vi~D~V~NH 108 (449)
T 3dhu_A 82 TLADFKALTDRAHELGMKVMLDIVYNH 108 (449)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSE
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccCc
Confidence 589999999999999999999988754
No 341
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=22.44 E-value=23 Score=28.51 Aligned_cols=19 Identities=0% Similarity=-0.206 Sum_probs=17.4
Q ss_pred CCcccchhhhHHhhhhCCC
Q 013521 13 TPLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~ 31 (441)
|.+|+||.+|+..|+++|+
T Consensus 38 gvSr~~vr~al~~L~~~Gl 56 (163)
T 2gqq_A 38 GLSPTPCLERVRRLERQGF 56 (163)
T ss_dssp SCCTTTSSSTHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHHCCc
Confidence 4559999999999999999
No 342
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=22.35 E-value=29 Score=26.40 Aligned_cols=18 Identities=11% Similarity=-0.092 Sum_probs=16.8
Q ss_pred CcccchhhhHHhhhhCCC
Q 013521 14 PLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~ 31 (441)
..++||.++++.|++.|+
T Consensus 54 ~s~sTV~r~L~~L~~~Gl 71 (123)
T 3r0a_A 54 LDVSTVQRSVKKLHEKEI 71 (123)
T ss_dssp SCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 459999999999999999
No 343
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=22.34 E-value=56 Score=31.57 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCcEEEEcccccc
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSAYAA 258 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~~~~ 258 (441)
.++++++++-||++|+-||.|-++..
T Consensus 102 ~~df~~Lv~~aH~~Gi~VilD~V~NH 127 (488)
T 2wc7_A 102 NEAFKELLDAAHQRNIKVVLDGVFNH 127 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 68999999999999999999988764
No 344
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=22.34 E-value=70 Score=31.83 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
+.++++++++-||++|+-||.|-++...
T Consensus 218 t~~dfk~lv~~~H~~Gi~VilD~V~NH~ 245 (585)
T 1wzl_A 218 DLPTFRRLVDEAHRRGIKIILDAVFNHA 245 (585)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEcCCcC
Confidence 3799999999999999999999887644
No 345
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Probab=22.33 E-value=54 Score=30.26 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCcEEEEccc
Q 013521 233 WQQLKKLVEFAKANGSIIVYDSA 255 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De~ 255 (441)
.+.+++++++|+++|++||.|--
T Consensus 89 l~~ld~~v~~a~~~Gi~VIld~H 111 (364)
T 1g01_A 89 KDLVYEGIELAFEHDMYVIVDWH 111 (364)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEec
Confidence 37899999999999999999854
No 346
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=22.24 E-value=1.7e+02 Score=26.12 Aligned_cols=106 Identities=8% Similarity=0.087 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhhCCCCCCcEEEcCCc---HHHHHHHHHhcCCC-CEEEEeCCCchhh--HhHHHHhccccccccccCc
Q 013521 117 MALRTAIADKFYKDMGIEGDEIFISDGA---QSDISRLQMLLGSN-VTVAVQDPSFPAY--IDTSVIVGQAGKFLKETGK 190 (441)
Q Consensus 117 ~~lr~~ia~~l~~~~~~~~~~I~~t~G~---~~al~~l~~l~~~g-d~Vlv~~p~y~~~--~~~~~~~g~~~~~~~~~~~ 190 (441)
.+-|+++.+...+..+ ..-.|++..|+ .+++......-+-| |.|++..|.|... ..+.+.+..
T Consensus 64 ~eEr~~vi~~~~~~~~-grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~---------- 132 (306)
T 1o5k_A 64 EDEREKLVSRTLEIVD-GKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKY---------- 132 (306)
T ss_dssp HHHHHHHHHHHHHHHT-TSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhC-CCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHH----------
Confidence 4445555555433111 12357777776 34455443333333 8899999988542 222222210
Q ss_pred cceeEEeecCCCCCccCCCCCCCCccEEEEcCCCCccccCCCHHHHHHHHHHHHHc-CcEEEEccc
Q 013521 191 YRNIVYMNCRPENNFFPDLSTTSRTDIIFFCSPNNPTGHAATWQQLKKLVEFAKAN-GSIIVYDSA 255 (441)
Q Consensus 191 ~~~v~~v~~~~~~~~~~~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~ 255 (441)
+ .+. -+..++++++|. .||..++.+.+.+|++ ++ ++.=|=|..
T Consensus 133 ------v-----------a~a-~~lPiilYn~P~-~tg~~l~~~~~~~La~---~~pnIvgiKdss 176 (306)
T 1o5k_A 133 ------I-----------SER-TDLGIVVYNVPG-RTGVNVLPETAARIAA---DLKNVVGIXEAN 176 (306)
T ss_dssp ------H-----------HTT-CSSCEEEEECHH-HHSCCCCHHHHHHHHH---HCTTEEEEEECC
T ss_pred ------H-----------HHh-CCCCEEEEeCcc-ccCcCCCHHHHHHHHH---hCCCEEEEeCCC
Confidence 0 011 123466777776 4899999777776652 33 454454543
No 347
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=22.21 E-value=53 Score=30.22 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDS 254 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De 254 (441)
..+.+++++++|.++|++||.|-
T Consensus 85 ~l~~ld~~v~~a~~~GiyVIlDl 107 (345)
T 3jug_A 85 DIDTVREVIELAEQNKMVAVVEV 107 (345)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEe
Confidence 47889999999999999999985
No 348
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=21.77 E-value=19 Score=26.74 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=19.4
Q ss_pred CcccchhhhHHhhhhCCC-CCccccc
Q 013521 14 PLKATVPFTMDFFLSSRW-PVPRHCT 38 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~-~~~~~g~ 38 (441)
..++||++.+..|++.|+ .+.+.|.
T Consensus 50 is~stvs~~L~~L~~~GlV~~~~~gr 75 (108)
T 2kko_A 50 MNLTTASANLQALKSGGLVEARREGT 75 (108)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 448999999999999999 3333443
No 349
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=21.76 E-value=92 Score=26.12 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=26.3
Q ss_pred CccEEEEcCC-CCccccCCCHHHHHHHHHHHHHcCcEEEE
Q 013521 214 RTDIIFFCSP-NNPTGHAATWQQLKKLVEFAKANGSIIVY 252 (441)
Q Consensus 214 ~~~~v~i~~p-~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 252 (441)
.+.+ ++|.- .|+.|..+. +.++.++|++||+.+|.
T Consensus 159 ~Pa~-vicEi~~~~dG~mar---~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 159 QPAG-VICELVRDEDGLMMR---LDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp CSBE-EEEEBBCTTTCCBCB---HHHHHHHHHHHTCCEEE
T ss_pred CceE-EEEEEeECCCCCcCC---HHHHHHHHHHcCCcEEE
Confidence 4555 44533 588999988 77788888999998874
No 350
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=21.70 E-value=38 Score=25.87 Aligned_cols=18 Identities=6% Similarity=-0.042 Sum_probs=16.6
Q ss_pred CcccchhhhHHhhhhCCC
Q 013521 14 PLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~ 31 (441)
..++||+++++.|++.||
T Consensus 62 ~~~~tvs~~l~~Le~~Gl 79 (141)
T 3bro_A 62 IKSSTATVLLQRMEIKKL 79 (141)
T ss_dssp CCHHHHHHHHHHHHHTTS
T ss_pred CCcchHHHHHHHHHHCCC
Confidence 448999999999999999
No 351
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=21.64 E-value=69 Score=31.31 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=36.9
Q ss_pred eeEEeecCCCCCccCCCCCCCCc---cEEEEcCCCCccccCCCHHHHHHHHHHHHHcCcEEEE
Q 013521 193 NIVYMNCRPENNFFPDLSTTSRT---DIIFFCSPNNPTGHAATWQQLKKLVEFAKANGSIIVY 252 (441)
Q Consensus 193 ~v~~v~~~~~~~~~~~~~~~~~~---~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 252 (441)
++..+.+.++.+|..++..-++- .+ ........|-.++++++++|++.|+++|+-||-
T Consensus 189 N~lh~HltDdq~wriei~~~P~Lt~~ga--~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIP 249 (512)
T 1jak_A 189 NKLHLHLSDDQGWRIAIDSWPRLATYGG--STEVGGGPGGYYTKAEYKEIVRYAASRHLEVVP 249 (512)
T ss_dssp CEEEEECBCSSCBCBCCTTSTHHHHTTT--SCCTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEEeccCCCceehhhhhHHHHhhcC--ccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 56666666555666554432110 00 011122336789999999999999999999984
No 352
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=21.64 E-value=46 Score=26.26 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCcEEEEccc
Q 013521 236 LKKLVEFAKANGSIIVYDSA 255 (441)
Q Consensus 236 ~~~i~~~a~~~~~~ii~De~ 255 (441)
-.+|.++|++||+.|++|-.
T Consensus 82 A~~I~e~A~e~gVPi~e~~~ 101 (144)
T 2jlj_A 82 VQTVRKIAEEEGVPILQRIP 101 (144)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 67899999999999999964
No 353
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=21.50 E-value=24 Score=25.92 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=19.3
Q ss_pred CcccchhhhHHhhhhCCC-CCccccc
Q 013521 14 PLKATVPFTMDFFLSSRW-PVPRHCT 38 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~-~~~~~g~ 38 (441)
..++||++.+..|++.|+ .+...|.
T Consensus 51 is~stvs~~L~~L~~~Glv~~~~~gr 76 (106)
T 1r1u_A 51 LSQSNVSHQLKLLKSVHLVKAKRQGQ 76 (106)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 348999999999999999 3333443
No 354
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=21.37 E-value=75 Score=31.34 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
+.++++++++.|+++|+-||.|-++...
T Consensus 78 t~~df~~Lv~~aH~~Gi~VilD~V~NHt 105 (557)
T 1zja_A 78 TMEDFDRLMAELKKRGMRLMVDVVINHS 105 (557)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 3789999999999999999999887643
No 355
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=21.34 E-value=67 Score=27.94 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=31.5
Q ss_pred CCccccCCCHHHHHHHHHHHHHcCcEEEEccccccccc
Q 013521 224 NNPTGHAATWQQLKKLVEFAKANGSIIVYDSAYAAYIT 261 (441)
Q Consensus 224 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~~~~~~~ 261 (441)
..-|-.++|.+.+++.++++++||+.+..-..+.+...
T Consensus 45 g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGTl~E~~~ 82 (251)
T 1qwg_A 45 GWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAY 82 (251)
T ss_dssp CTTGGGGSCHHHHHHHHHHHHTTTCEEEECHHHHHHHH
T ss_pred cCceeeecCHHHHHHHHHHHHHcCCeEECCcHHHHHHH
Confidence 44577889999999999999999999999887665433
No 356
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.33 E-value=28 Score=24.10 Aligned_cols=18 Identities=22% Similarity=-0.051 Sum_probs=16.6
Q ss_pred CcccchhhhHHhhhhCCC
Q 013521 14 PLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~ 31 (441)
..++||.+.++.|++.|+
T Consensus 50 is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 50 IGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp CCHHHHHHHHHHHHHHTS
T ss_pred CCHhhHHHHHHHHHHCCC
Confidence 349999999999999999
No 357
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=21.30 E-value=32 Score=25.83 Aligned_cols=27 Identities=7% Similarity=-0.084 Sum_probs=21.9
Q ss_pred CCcccchhhhHHhhhhCCC-CCcccccc
Q 013521 13 TPLKATVPFTMDFFLSSRW-PVPRHCTE 39 (441)
Q Consensus 13 ~~~~~Tv~~a~~~l~~~g~-~~~~~g~~ 39 (441)
+.++.+|.+-+..|++.|+ .+.++|.|
T Consensus 40 giS~~aVs~rL~~Le~~GLV~~~~rg~Y 67 (111)
T 3b73_A 40 RISKSSVSRRLKKLADHDLLQPLANGVY 67 (111)
T ss_dssp CSCHHHHHHHHHHHHHTTSEEECSTTCE
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCCceE
Confidence 4458999999999999999 55677744
No 358
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=21.10 E-value=3.6e+02 Score=24.51 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=53.0
Q ss_pred CCCCcEEEcCCcHH-HHHHHHHhcCCC--CEEEEeC--CCchhhHhHHHHhccccccccccCccceeEEeecCCCCCccC
Q 013521 133 IEGDEIFISDGAQS-DISRLQMLLGSN--VTVAVQD--PSFPAYIDTSVIVGQAGKFLKETGKYRNIVYMNCRPENNFFP 207 (441)
Q Consensus 133 ~~~~~I~~t~G~~~-al~~l~~l~~~g--d~Vlv~~--p~y~~~~~~~~~~g~~~~~~~~~~~~~~v~~v~~~~~~~~~~ 207 (441)
+.....++|.|.+. ++..|....+.| -.|++.+ |.+.+ ...+..+...| +++..++-..- ....
T Consensus 139 I~~g~~ILTh~~S~tvl~~l~~A~~~gk~~~V~v~EtRP~~qG-rltA~eL~~~G---------I~vtlI~Dsa~-~~~M 207 (338)
T 3a11_A 139 IEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQG-KITAKELASYG---------IPVIYVVDSAA-RHYM 207 (338)
T ss_dssp CCTTCEEEECSCCHHHHHHHHHHHHTTCCCEEEEECCTTTTHH-HHHHHHHHHTT---------CCEEEECGGGT-TTTG
T ss_pred hCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEeCCCCchhh-HHHHHHHHhCC---------CCEEEEehHHH-HHHH
Confidence 34556777766554 444555554444 4566644 77777 44444443333 36666653322 2111
Q ss_pred CCCCCCCccEEEEc-C-------CCCccccCCCHHHHHHHHHHHHHcCcEEEEc
Q 013521 208 DLSTTSRTDIIFFC-S-------PNNPTGHAATWQQLKKLVEFAKANGSIIVYD 253 (441)
Q Consensus 208 ~~~~~~~~~~v~i~-~-------p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~D 253 (441)
++++.|++- . --|..|+. .++-+|+.|++.+++=
T Consensus 208 -----~~Vd~VivGAd~V~anG~v~NKiGT~-------~lAl~Ak~~~vPfyV~ 249 (338)
T 3a11_A 208 -----KMTDKVVMGADSITVNGAVINKIGTA-------LIALTAKEHRVWTMIA 249 (338)
T ss_dssp -----GGCSEEEECCSEECTTSCEEEETTHH-------HHHHHHHHTTCEEEEE
T ss_pred -----HhCCEEEECccEEecCCCEeecccHH-------HHHHHHHHcCCCEEEe
Confidence 345555542 1 13566644 6777789999988864
No 359
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=20.58 E-value=80 Score=31.27 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEEccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAY 259 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~ 259 (441)
+.++++++++-|+++|+-||.|-++...
T Consensus 91 t~~df~~lv~~aH~~Gi~VilD~V~NH~ 118 (570)
T 1m53_A 91 TMEDFDSLVAEMKKRNMRLMIDVVINHT 118 (570)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 4789999999999999999999887643
No 360
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3
Probab=20.43 E-value=65 Score=28.47 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCcEEEEcc
Q 013521 233 WQQLKKLVEFAKANGSIIVYDS 254 (441)
Q Consensus 233 ~~~~~~i~~~a~~~~~~ii~De 254 (441)
.+.+++++++|.++|++||.|-
T Consensus 76 ~~~ld~~v~~a~~~Gi~vild~ 97 (291)
T 1egz_A 76 KAKVERVVDAAIANDMYAIIGW 97 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEc
Confidence 4578899999999999999984
No 361
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=20.41 E-value=36 Score=24.41 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=16.6
Q ss_pred CcccchhhhHHhhhhCCC
Q 013521 14 PLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~ 31 (441)
..++||++.++.|++.||
T Consensus 38 is~~tvs~~l~~Le~~gl 55 (99)
T 1tbx_A 38 MSTATFYDAKKFLIQEGF 55 (99)
T ss_dssp CCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 448999999999999999
No 362
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A
Probab=20.39 E-value=63 Score=30.41 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDS 254 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De 254 (441)
..+.+++++++|+++|+.||.|=
T Consensus 111 ~~~~ld~vV~~a~~~Gl~VILDl 133 (399)
T 3n9k_A 111 QVQYLEKALGWARKNNIRVWIDL 133 (399)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEe
Confidence 36889999999999999999994
No 363
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=20.35 E-value=81 Score=31.49 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAA 258 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~ 258 (441)
+.++++++++-||++|+-||.|-++..
T Consensus 197 t~~df~~Lv~~aH~~Gi~VilD~V~NH 223 (601)
T 3edf_A 197 SNEDFVRLSTEARKRGMGLIQDVVLSH 223 (601)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CHHHHHHHHHHHHHcCCEEEEEECCcc
Confidence 568999999999999999999988764
No 364
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=20.22 E-value=34 Score=24.67 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=16.6
Q ss_pred CcccchhhhHHhhhhCCC
Q 013521 14 PLKATVPFTMDFFLSSRW 31 (441)
Q Consensus 14 ~~~~Tv~~a~~~l~~~g~ 31 (441)
..++||++.++.|++.||
T Consensus 46 is~~tv~~~l~~L~~~gl 63 (109)
T 1sfx_A 46 LSARFVRDRLKVLLKRGF 63 (109)
T ss_dssp CCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 449999999999999999
No 365
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=20.18 E-value=88 Score=31.25 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCcEEEEcccccccc
Q 013521 232 TWQQLKKLVEFAKANGSIIVYDSAYAAYI 260 (441)
Q Consensus 232 ~~~~~~~i~~~a~~~~~~ii~De~~~~~~ 260 (441)
+.++++++++-|+++|+-||.|-++....
T Consensus 191 t~~d~~~lv~~~H~~Gi~VilD~V~NH~~ 219 (602)
T 2bhu_A 191 RPEDLMALVDAAHRLGLGVFLDVVYNHFG 219 (602)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 48999999999999999999999988654
Done!