Query 013524
Match_columns 441
No_of_seqs 243 out of 650
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 04:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2572 Ribosome biogenesis pr 100.0 5E-116 1E-120 882.6 23.3 324 1-330 111-434 (498)
2 KOG2573 Ribosome biogenesis pr 100.0 5E-103 1E-107 788.6 21.8 291 1-291 120-415 (498)
3 COG1498 SIK1 Protein implicate 100.0 2.4E-92 5.2E-97 716.7 26.7 285 2-291 71-358 (395)
4 PRK14552 C/D box methylation g 100.0 9.5E-90 2.1E-94 707.6 26.6 288 1-291 88-384 (414)
5 KOG2574 mRNA splicing factor P 100.0 9.7E-71 2.1E-75 557.7 11.8 269 47-320 94-364 (492)
6 PF01798 Nop: Putative snoRNA 100.0 1.8E-56 3.9E-61 406.1 8.7 149 141-289 1-150 (150)
7 PF08060 NOSIC: NOSIC (NUC001) 99.9 2.3E-23 5.1E-28 159.2 6.7 53 49-101 1-53 (53)
8 KOG2014 SMT3/SUMO-activating c 70.7 8.3 0.00018 40.0 5.5 72 119-191 229-304 (331)
9 KOG2572 Ribosome biogenesis pr 47.0 12 0.00026 40.3 1.9 38 150-187 196-233 (498)
10 PF10436 BCDHK_Adom3: Mitochon 45.7 46 0.001 31.0 5.5 39 65-103 52-95 (164)
11 PF04286 DUF445: Protein of un 40.5 3E+02 0.0065 27.4 10.7 40 147-186 283-322 (367)
12 PF05918 API5: Apoptosis inhib 36.8 1.1E+02 0.0025 34.2 7.6 37 140-176 130-170 (556)
13 PF04001 Vhr1: Transcription f 36.2 81 0.0018 27.4 5.0 65 27-92 5-83 (95)
14 COG5103 CDC39 Cell division co 30.8 1.3E+02 0.0028 37.1 7.0 49 150-198 1113-1174(2005)
15 PRK07117 acyl carrier protein; 30.1 2E+02 0.0043 23.7 6.3 27 120-146 43-69 (79)
16 KOG2199 Signal transducing ada 27.8 46 0.001 35.9 2.7 61 133-194 20-80 (462)
17 TIGR03738 PRTRC_C PRTRC system 27.7 35 0.00075 28.0 1.4 17 69-85 26-42 (66)
18 KOG2573 Ribosome biogenesis pr 26.5 45 0.00097 36.1 2.3 17 240-256 277-293 (498)
19 PF00790 VHS: VHS domain; Int 25.6 1.8E+02 0.004 25.9 5.8 58 133-191 17-74 (140)
20 KOG1086 Cytosolic sorting prot 25.0 60 0.0013 35.6 2.9 34 133-190 20-53 (594)
21 PF11887 DUF3407: Protein of u 24.2 2.4E+02 0.0051 28.3 6.8 86 10-96 2-89 (267)
22 PF05103 DivIVA: DivIVA protei 23.6 41 0.00089 29.2 1.2 43 32-74 9-51 (131)
23 cd07631 BAR_APPL1 The Bin/Amph 23.5 1.8E+02 0.0039 28.9 5.6 75 20-95 32-109 (215)
24 KOG3365 NADH:ubiquinone oxidor 22.2 41 0.0009 31.3 0.9 38 63-101 45-82 (145)
25 TIGR01589 A_thal_3526 uncharac 20.9 1.3E+02 0.0028 24.0 3.4 40 140-180 2-41 (57)
26 KOG2066 Vacuolar assembly/sort 20.6 2.7E+02 0.0059 32.6 7.0 129 63-238 676-821 (846)
27 cd03568 VHS_STAM VHS domain fa 20.3 96 0.0021 28.4 2.9 95 134-252 13-107 (144)
No 1
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-116 Score=882.64 Aligned_cols=324 Identities=76% Similarity=1.091 Sum_probs=310.3
Q ss_pred ChhHHHHHhhHHHHhcCCCCCCcchhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 013524 1 MELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFP 80 (441)
Q Consensus 1 ~el~R~iR~~~~~l~~~~~~~~~~~~~lglshslsr~Klk~s~~k~D~mIvqai~lLddLDkEIn~~~~rvrEwY~~hFP 80 (441)
+||+||||+|+++||+|+.++||.+|+|||+|+++||||+|+||+|||||||||+||||||+|||+|+||||||||||||
T Consensus 111 ~el~RgiRs~l~el~~g~~~~dl~~msLglaHslar~Klkfs~dKvDtmIiQaisLLDDLDkeLNtY~mRvrEwYGwHFP 190 (498)
T KOG2572|consen 111 MELLRGIRSQLTELISGLNDSDLAAMSLGLAHSLARYKLKFSPDKVDTMIIQAISLLDDLDKELNTYAMRVKEWYGWHFP 190 (498)
T ss_pred HHHHHHHHHHHHHHhccCChhhhhHHHHHHHHHHHhhhcccCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCcHHHHHHHHHhcCCCCCccccccccCCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013524 81 ELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLY 160 (441)
Q Consensus 81 EL~~iv~d~~~YakvV~~ignr~n~~~~dLs~iL~~e~~~~i~~aA~~SmGt~lse~Dl~~I~~~c~~vi~L~e~R~~L~ 160 (441)
||.+||.||+.|+++|+.||+|.|+...||++|||++++..+..+|.+||||+|++.|+.+|..+|+||+++.+||.||+
T Consensus 191 EL~kii~dn~~Yak~vk~mG~r~~~a~~d~sEil~eeiE~~~k~aAeiSMgteis~~Dl~nI~~l~dqVle~aeyR~qL~ 270 (498)
T KOG2572|consen 191 ELAKIIQDNYAYAKLVKAMGVRCNAASLDFSEILPEEIEAELKEAAEISMGTEISDSDLLNIKELCDQVLELAEYRDQLI 270 (498)
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhhhcccHHhhchHHHHHHHHhhhhhhhcccccHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeeccccccCCc
Q 013524 161 DYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAP 240 (441)
Q Consensus 161 ~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLkt~~~tPK~GlIy~s~lV~~ap~ 240 (441)
+||++||..||||||+|||++||||||+|||||.|||++|+||||||||||||||+|+|+++||+||+||||+||+|+||
T Consensus 271 dylknrM~~iAPnLTaLvGElVGaRlIshaGSL~nLaK~p~StIQilGAEKALFrALKtk~~TPKYGLIyhasLVgQa~p 350 (498)
T KOG2572|consen 271 DYLKNRMRTIAPNLTALVGELVGARLISHAGSLFNLAKAPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLVGQASP 350 (498)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhHHHHhhCChhHHHHHhhHHHHHHHHhcccCCCCCcceeccchhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHhhhhHHHHHhhhccCCCCCChhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCccccccccccCCCCcccc
Q 013524 241 KHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAKGKPKIEVYDKDRKKGPGAMIT 320 (441)
Q Consensus 241 ~~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kl~~~~~~~~~~~~~~~~~~~~~~~~kk~~a~~~~~ 320 (441)
+++|||+|+||+|++||+|+|+|+++.++.+|.+.|.+||+||+.|+++.+++.++.+++.+....|.... ...
T Consensus 351 KnKGKIaR~LAaK~alA~R~Dalge~~~~~iGve~R~klE~rlr~lE~r~l~~~s~~~k~~~K~~~ye~~~------~~~ 424 (498)
T KOG2572|consen 351 KNKGKIARSLAAKTALAARIDALGEESTNEIGVENRAKLEKRLRSLEGRDLQESSILKKPLAKKEKYEGRS------ETT 424 (498)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhhhccCcccccccccchhHHHHhcccc------ccC
Confidence 99999999999999999999999999999999999999999999999999998888888878777776311 124
Q ss_pred cccccCCccc
Q 013524 321 AAKTYNPAAD 330 (441)
Q Consensus 321 ~~~~~~~~~d 330 (441)
.+.+|++..|
T Consensus 425 ~adt~~~~~~ 434 (498)
T KOG2572|consen 425 SADTYNTIRD 434 (498)
T ss_pred cccccccccc
Confidence 4455555555
No 2
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-103 Score=788.55 Aligned_cols=291 Identities=55% Similarity=0.849 Sum_probs=281.4
Q ss_pred ChhHHHHHhhHHHHhcCCCCCCcchhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 013524 1 MELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFP 80 (441)
Q Consensus 1 ~el~R~iR~~~~~l~~~~~~~~~~~~~lglshslsr~Klk~s~~k~D~mIvqai~lLddLDkEIn~~~~rvrEwY~~hFP 80 (441)
+||+||+|.||+.|+.+|++.|+..++|||+|+|||.|++|+++++|+||||+|.|||+||++||+|.||||||||||||
T Consensus 120 ~ellRGvR~hf~kl~K~L~~~d~~kaqLGLghsYSRaKVkfnV~R~DnmvIqaI~lLDqlDKDINtfaMRirEwYswhFP 199 (498)
T KOG2573|consen 120 QELLRGVRKHFDKLMKGLDPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIALLDQLDKDINTFAMRIREWYSWHFP 199 (498)
T ss_pred HHHHHHHHHHHHHHHccCCCccHHHHHhcccchhhhhheeecccccchHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCcHHHHHHHHHhcCCCCCcccc---ccccCC--HHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013524 81 ELAKIIQDNILYAKAVKLMGDRSNAAKLD---FSEILP--EEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEY 155 (441)
Q Consensus 81 EL~~iv~d~~~YakvV~~ignr~n~~~~d---Ls~iL~--~e~~~~i~~aA~~SmGt~lse~Dl~~I~~~c~~vi~L~e~ 155 (441)
||.+||+||..||++|++|+++..++... +-+.|. .+....|+.|+.+|||++||+.||.||..|+++|.+|.+|
T Consensus 200 EL~kiv~DNy~ya~~~~~i~dk~~l~ed~~~~~~e~l~~d~~ka~~Iiea~k~SMG~diS~~Dl~Ni~~fa~rV~~l~ey 279 (498)
T KOG2573|consen 200 ELVKIVPDNYKYAKVVKFIVDKEKLNEDGLHELLEDLGVDSEKAQEIIEAAKNSMGQDISPADLENIRKFAERVSDLAEY 279 (498)
T ss_pred HHHHhccchHHHHHHHHHHhchhhccccchhHHHHHhcCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998886654 333443 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeecccc
Q 013524 156 RAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLV 235 (441)
Q Consensus 156 R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLkt~~~tPK~GlIy~s~lV 235 (441)
|++|.+||.++|+.|||||++|+|+.||||||+|||||+||||+||||||||||||||||+|+|+++|||||+||||+||
T Consensus 280 Rk~L~~YL~~KMs~vAPnLa~LIGe~vgARLIShAGsLtNLaK~PASTvQIlGAEKALFRALKtrgnTPKYGLIyhSsfi 359 (498)
T KOG2573|consen 280 RKQLSDYLKDKMSSVAPNLAALIGEVVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIYHSSFI 359 (498)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHhccccchhhhCcchHHHHhhhHHHHHHHHHhcCCCCCceeEeecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCcchHHHHhhhhHHHHHhhhccCCCCCChhhHHHHHHHHHHHHHhhcCCC
Q 013524 236 GQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKEL 291 (441)
Q Consensus 236 ~~ap~~~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kl~~~~~ 291 (441)
+.|..+++|+|+|+||+||+||+|||||++.+++.||..+|++||+||+.++.+..
T Consensus 360 grA~akNKGRISRyLAnKCSIAsrIDcFse~pts~fGe~Lr~qVEeRL~fy~tg~~ 415 (498)
T KOG2573|consen 360 GRAGAKNKGRISRYLANKCSIASRIDCFSEDPTSVFGEKLREQVEERLEFYETGEA 415 (498)
T ss_pred hhhhccccchHHHHHHhhccHHHhhhhcccCCchHHHHHHHHHHHHHHHhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999998653
No 3
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-92 Score=716.67 Aligned_cols=285 Identities=50% Similarity=0.784 Sum_probs=274.7
Q ss_pred hhHHHHHhhHHHHhcCCCCCCcchhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 013524 2 ELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPE 81 (441)
Q Consensus 2 el~R~iR~~~~~l~~~~~~~~~~~~~lglshslsr~Klk~s~~k~D~mIvqai~lLddLDkEIn~~~~rvrEwY~~hFPE 81 (441)
.+.++++.++.+|.... +.|+..|.++++|.++|.++++++++.|+||||+|++|||||++||.|+|||||||||||||
T Consensus 71 ~~r~~~~~~~~~l~~~~-~~d~~~~~~~~~~~~sr~kv~~~~~~~D~~iiqai~~lddiDk~iN~~~~RlrEWY~~hFPE 149 (395)
T COG1498 71 DLRENAEEALGELSSSD-EDDYYRMLLGLGHELSRIKVREEVDKEDKLIIQAIEALDDIDKEINLLAMRLREWYGWHFPE 149 (395)
T ss_pred HHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 46788888888888776 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCcHHHHHHHHHhcCCCCCccc---cccccCCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013524 82 LAKIIQDNILYAKAVKLMGDRSNAAKL---DFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQ 158 (441)
Q Consensus 82 L~~iv~d~~~YakvV~~ignr~n~~~~---dLs~iL~~e~~~~i~~aA~~SmGt~lse~Dl~~I~~~c~~vi~L~e~R~~ 158 (441)
|++||+||.+||++|..+|+|.+++.. +|..++|. ..+.|..+|..|||+++++.|+.+|..+|+.|.+|.++|.+
T Consensus 150 L~~lv~~~~~Y~~~V~~~g~~~~~~~~~~~~l~~~~~~-~~~~i~~aA~~SmG~~~~~~Di~~i~~~ae~i~~L~~~R~~ 228 (395)
T COG1498 150 LSSLVPDNEQYAKLVSALGNRENINKESLKDLGFALPD-IAIKIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQ 228 (395)
T ss_pred hhhhcccHHHHHHHHHHHcchhccchhhHHHHhhhcch-HHHHHHHHhhcccccCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 56666777 88899999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeeccccccC
Q 013524 159 LYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQA 238 (441)
Q Consensus 159 L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLkt~~~tPK~GlIy~s~lV~~a 238 (441)
|.+||+++|+.||||||+||||+||||||+|||||.+||+||||||||||||||||+||+++++|||||+||||++|+++
T Consensus 229 l~~Yi~~~M~~vAPNlt~LVG~~lgARLIs~AGgL~~LAk~PASTIQvLGAEKALFraL~~~~~~PK~GvIy~~p~I~~s 308 (395)
T COG1498 229 LEEYIESKMSEIAPNLTALVGPVLGARLISHAGGLTRLAKMPASTIQVLGAEKALFRALKTGAKTPKYGVIYQSPLIQKS 308 (395)
T ss_pred HHHHHHHHHHHhCccHHHHHhHHHHHHHHHHhcCHHHHHhCccchhhhhhhhHHHHHHHhCCCCCCCceeEeeChhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCcchHHHHhhhhHHHHHhhhccCCCCCChhhHHHHHHHHHHHHHhhcCCC
Q 013524 239 APKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKEL 291 (441)
Q Consensus 239 p~~~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kl~~~~~ 291 (441)
|+|+||||||+||||||||||||+|++..++ ..||++|++||++|.+++.
T Consensus 309 p~~~rGkiAR~LAaK~AIAARiD~~s~~~~~---~~lr~ele~Ri~~i~~~~~ 358 (395)
T COG1498 309 PPWQRGKIARALAAKLAIAARIDAFSGEPDG---ISLREELEKRIEKLKEKPP 358 (395)
T ss_pred CHHHhhHHHHHHHHHHHHHHHHHhccCCCCh---HHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999998876 8999999999999998764
No 4
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=100.00 E-value=9.5e-90 Score=707.56 Aligned_cols=288 Identities=40% Similarity=0.606 Sum_probs=278.1
Q ss_pred ChhHHHHHhhHHHHhcCC----CCCCcchhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013524 1 MELMRGVRSQLTELISGL----AGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYG 76 (441)
Q Consensus 1 ~el~R~iR~~~~~l~~~~----~~~~~~~~~lglshslsr~Klk~s~~k~D~mIvqai~lLddLDkEIn~~~~rvrEwY~ 76 (441)
++++||||.|+++++.++ .+.|+..|.+||+|++||++|+|++++.|+||||||+++|+||++||.||||||+||+
T Consensus 88 ~~~~r~iR~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~sr~klk~~~~~~D~~iiqai~~ld~ldk~in~~~~RLrewY~ 167 (414)
T PRK14552 88 NKIGEFLRENLPELGVEYGFFEDEEEFYEKLHEWSVELTRRKLRSAAQKRDKLAIQAIRAIDDIDKTINLFSERLREWYS 167 (414)
T ss_pred HHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHhHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999754 5789999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhhcCcHHHHHHHHHhcCCCCCcccccccc-CCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013524 77 WHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEI-LPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEY 155 (441)
Q Consensus 77 ~hFPEL~~iv~d~~~YakvV~~ignr~n~~~~dLs~i-L~~e~~~~i~~aA~~SmGt~lse~Dl~~I~~~c~~vi~L~e~ 155 (441)
||||||++||+|+.+|+++|+.++++.++...+|.++ +++++++.|.++|..|||+++++.|+.+|..+|++|++|+++
T Consensus 168 ~~FPEL~~iv~d~~~Y~~iV~~i~~~~~i~~~~l~~i~l~~eka~~I~~aA~~S~G~~lse~dl~~I~~~a~~I~~L~e~ 247 (414)
T PRK14552 168 LHFPELDELVKKHEEYVKLVSELGDRENYTREKLKKLGLPENKARKIAEAAKKSMGADLSEFDLEAIKKLANEILDLYKL 247 (414)
T ss_pred hhCcCHHhhcCChHHHHHHHHHcCChhhhhhhHHHhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988889998 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeecccc
Q 013524 156 RAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLV 235 (441)
Q Consensus 156 R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLkt~~~tPK~GlIy~s~lV 235 (441)
|++|.+||+++|..||||||+|||+++|||||+|||||.+||+|||||||||||||+||+||+|++.||||||||||++|
T Consensus 248 R~~L~~yI~~~M~~iAPNLtaLVG~~lAArLIa~AGsL~~Lak~PastIqiLGAeKalf~~l~t~~~~pk~G~Iy~~~~V 327 (414)
T PRK14552 248 REELEDYLETVMKEVAPNLTALVGPSLGARLISLAGGLEELAKMPASTIQVLGAEKALFRHLRTGAKPPKHGVIFQYPAI 327 (414)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhHHHHHHHHHhCCHHHHhhCCchHHHHhchhhHHHHHhccCCCCCCceEEEcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCcchHHHHhhhhHHHHHhhhccCCCCCChhhHHHHHHHHHHHHHh----hcCCC
Q 013524 236 GQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNL----EGKEL 291 (441)
Q Consensus 236 ~~ap~~~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kl----~~~~~ 291 (441)
+++|+++||||+|+||||||||||||+|++ +.+|..+|++|+.||++| .+||.
T Consensus 328 ~~~p~~~rgkiaR~lA~K~alAARiD~~~~---~~~G~~l~~~l~~ri~~i~~k~~~Pp~ 384 (414)
T PRK14552 328 HGSPWWQRGKIARALAAKLAIAARVDYFSG---RYIGDELKEELNKRIEEIKEKYPKPPK 384 (414)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHhhhcCC---ccchHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999986 479999999999999976 55553
No 5
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification]
Probab=100.00 E-value=9.7e-71 Score=557.66 Aligned_cols=269 Identities=28% Similarity=0.466 Sum_probs=258.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhcCcHHHHHHHHHhcCCCCCccccccc--cCCHHHHHHHHH
Q 013524 47 DTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSE--ILPEEVEAQLKE 124 (441)
Q Consensus 47 D~mIvqai~lLddLDkEIn~~~~rvrEwY~~hFPEL~~iv~d~~~YakvV~~ignr~n~~~~dLs~--iL~~e~~~~i~~ 124 (441)
=.+||.|+.+..+||+||+.+|.|||+||+.+||||++||++|++|+++|+.|||..|...++|.. |||..++|+|.+
T Consensus 94 ykLIVd~n~iavdI~nEI~ivH~FikdkY~~RFpELeSLVp~~ldY~~~Vk~LgNelD~~~~~l~~~~~L~~atIMVvsv 173 (492)
T KOG2574|consen 94 YKLIVDCNQIAVDIENEIVIVHNFIKDKYSKRFPELESLVPNPLDYAKVVKELGNELDLKKVDLELQAILPSATIMVVSV 173 (492)
T ss_pred eeeeechhhhhhhhhhhHHHHHHHHHHHHHhhhhhhHhhccCHHHHHHHHHHHhhhHHHHHhhhhhhccCccceEEEEEE
Confidence 357999999999999999999999999999999999999999999999999999999887777665 999999999999
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhh
Q 013524 125 AAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTV 204 (441)
Q Consensus 125 aA~~SmGt~lse~Dl~~I~~~c~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStI 204 (441)
+|.+|.|..++++.+.+|.++|+.+++|+..|..|.+||+|||+.||||||+|||+.+||+||++||||.+|++||||||
T Consensus 174 TasTT~G~~Lp~d~~~~v~eAc~~a~~L~~~k~ki~eyVeSrms~IAPNLs~ivGs~taA~Lig~AGGls~Lsk~PaCNv 253 (492)
T KOG2574|consen 174 TASTTQGNKLPEDELEQVLEACEMAEQLNKLKEKIYEYVESRMSFIAPNLSAIVGSTTAAKLIGIAGGLSELSKMPACNV 253 (492)
T ss_pred EeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHhhhcHHHHHHHHHhhcCchhhccCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhhhhhhhhccCCCCCeeEEeeccccccCCccCcchHHHHhhhhHHHHHhhhccCCCCCChhhHHHHHHHHHHHH
Q 013524 205 QILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLR 284 (441)
Q Consensus 205 QiLGAEKaLFraLkt~~~tPK~GlIy~s~lV~~ap~~~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~ 284 (441)
|+||+.|.+.++|+|-...|+|||||+|++||.+||.+|+|++|||||||+||||||+++++++|.+|.+||++|+.+|+
T Consensus 254 ~vlGk~kk~l~gfst~~~~~~~Gyly~s~ivQk~Ppdl~~ka~Rl~aAKvtLAARVDa~he~~~g~~g~~~k~evekK~e 333 (492)
T KOG2574|consen 254 QVLGKQKKTLIGFSTTSSLPHTGYLYASDIVQKTPPDLRKKAARLVAAKVTLAARVDAGHESPNGELGHEFKAEVEKKIE 333 (492)
T ss_pred hhhhccchhccccccccccCccceeeHHhHhhhcCccHHHHHHHHHHHHHHHHHHhhccccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCCCccccccccccCCCCcccc
Q 013524 285 NLEGKELGRAAGSAKGKPKIEVYDKDRKKGPGAMIT 320 (441)
Q Consensus 285 kl~~~~~~~~~~~~~~~~~~~~~~~~kk~~a~~~~~ 320 (441)
+|.++|.. ..++|.|.|.+.+||+|.|++..
T Consensus 334 Kl~EpPpv-----k~~KaLP~P~d~pkKkRgGRR~R 364 (492)
T KOG2574|consen 334 KLQEPPPV-----KQTKALPIPLDGPKKKRGGRRFR 364 (492)
T ss_pred hhcCCCCC-----CcCCCCCCCCccchhhccchHHH
Confidence 99998742 34678899999999999987653
No 6
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins. The function of the domain is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Proteins have been implicated in an expanding variety of functions during pre-mRNA splicing. Molecular cloning has identified genes encoding spliceosomal proteins that potentially act as novel RNA helicases, GTPases, or protein isomerases. Novel protein-protein and protein-RNA interactions that are required for functional spliceosome formation have also been described. Finally, growing evidence suggests that proteins may contribute directly to the spliceosome's active sites [].; PDB: 3GQX_B 3GQU_A 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E 3SIU_B 3SIV_H ....
Probab=100.00 E-value=1.8e-56 Score=406.11 Aligned_cols=149 Identities=55% Similarity=0.869 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhcc
Q 013524 141 NIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTK 220 (441)
Q Consensus 141 ~I~~~c~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLkt~ 220 (441)
||.++|++|++|+++|+.|.+||++||..||||||+|||+.||||||++||||.+||+|||||||+|||||++|+||+++
T Consensus 1 ~I~~~~~~~~~L~~~r~~l~~yi~~rm~~iAPNLsaLvG~~vaA~Li~~aGgL~~Lak~Pasniq~lGaeK~~~~~l~~~ 80 (150)
T PF01798_consen 1 NILSACDEVISLSEYRKELLEYIESRMSEIAPNLSALVGSSVAARLISHAGGLENLAKMPASNIQVLGAEKALFRGLKTK 80 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTS-HHHHTTSTCHHHHHHHHCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCchHHHHHCcHHHHHHHHHcccHHHHHhCCHhhHHHHHhHHHHhHHhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEeeccccccCCccCcchHHHHhhhhHHHHHhhhccCCCCCCh-hhHHHHHHHHHHHHHhhcC
Q 013524 221 HATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNS-MGLENRAKLEARLRNLEGK 289 (441)
Q Consensus 221 ~~tPK~GlIy~s~lV~~ap~~~KgKiaR~LAaK~aLAARvDa~~~~~d~~-~G~~~Re~Ie~rl~kl~~~ 289 (441)
+.||||||||||++|+++||++||||+|+||+||+||||||+|++.++++ ||..||++|+.||++|+++
T Consensus 81 ~~~pk~G~i~~~~~V~~~p~~~r~k~~R~lA~K~aLAARiD~~~~~~~~~~~G~~~re~i~~ki~k~~e~ 150 (150)
T PF01798_consen 81 AKTPKYGYIYQSDLVQKAPPKLRGKAARMLAAKCALAARIDAFSESPDGSAFGKKLREEIEKKIEKLQEK 150 (150)
T ss_dssp -SSTSSSGGGGSHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCeeEEecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999995 9999999999999999873
No 7
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=99.89 E-value=2.3e-23 Score=159.24 Aligned_cols=53 Identities=58% Similarity=1.091 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhcCcHHHHHHHHHhcC
Q 013524 49 MIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGD 101 (441)
Q Consensus 49 mIvqai~lLddLDkEIn~~~~rvrEwY~~hFPEL~~iv~d~~~YakvV~~ign 101 (441)
||+|||+++++||+|||.+|||+|||||||||||++||+||.+|+++|+.|||
T Consensus 1 ~Ii~~~~l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~~~~Y~~vV~~i~n 53 (53)
T PF08060_consen 1 LIIQANELLDDIDKEINLLHMRLREWYSWHFPELESLVPNPIDYAKVVKIIGN 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-SHHHHHHHHHHTTS
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHcCCHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999997
No 8
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=70.73 E-value=8.3 Score=40.03 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhcCC---CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhc
Q 013524 119 EAQLKEAAMISMGT---EVSDLDLLNIKELCDQVLS-LAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGG 191 (441)
Q Consensus 119 ~~~i~~aA~~SmGt---~lse~Dl~~I~~~c~~vi~-L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AG 191 (441)
.+.+...-..|-|. +.+++|+..++.+-++++. ++-.-.++.+|+..--..++| .||+||..||...|-.-+
T Consensus 229 ll~v~l~f~~s~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~P-v~AvVGGivaQevIk~is 304 (331)
T KOG2014|consen 229 LLPVLLKFRTSEGRDPGETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAP-VCAVVGGILAQEVIKAIS 304 (331)
T ss_pred hHHHHHHHHHhcCCCCccccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCc-hhhhhhhHhHHHHHHHhh
Confidence 34455555566555 4569999998888777776 666677778999999999999 999999999998876543
No 9
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=47.03 E-value=12 Score=40.30 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHH
Q 013524 150 LSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLI 187 (441)
Q Consensus 150 i~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLI 187 (441)
++.+-.-..+..++-.|....--+++.++++.+-+.|=
T Consensus 196 i~dn~~Yak~vk~mG~r~~~a~~d~sEil~eeiE~~~k 233 (498)
T KOG2572|consen 196 IQDNYAYAKLVKAMGVRCNAASLDFSEILPEEIEAELK 233 (498)
T ss_pred HHhhHHHHHHHHHHhHhhhhhcccHHhhchHHHHHHHH
Confidence 33344445666777788888888888888888877765
No 10
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=45.74 E-value=46 Score=30.99 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhccCcchhhhh-----cCcHHHHHHHHHhcCCC
Q 013524 65 NTYAMRVREWYGWHFPELAKII-----QDNILYAKAVKLMGDRS 103 (441)
Q Consensus 65 n~~~~rvrEwY~~hFPEL~~iv-----~d~~~YakvV~~ignr~ 103 (441)
|-....|++||-+-|-+|-+.= .++..|+.++..|-++.
T Consensus 52 ~p~i~~V~~~Y~~sF~~L~~~~~~~~~~~~~~F~~~l~~i~~~H 95 (164)
T PF10436_consen 52 NPSIQQVYEWYLQSFEELRSFPPPKTLEDNEKFTELLERILDRH 95 (164)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSTTTSCCHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5667899999999999998752 25678888888777664
No 11
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=40.49 E-value=3e+02 Score=27.42 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHH
Q 013524 147 DQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARL 186 (441)
Q Consensus 147 ~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArL 186 (441)
+.+..-.+.++.|..||...+..+..+....||.+|.-+|
T Consensus 283 ~~l~~~~~l~~~i~~~i~~~l~~~v~~~~~~i~~~V~~~l 322 (367)
T PF04286_consen 283 DKLKEDPELREKINRFIENLLERIVESNHIDIGEIVEEKL 322 (367)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333336778888888888888888887777777776554
No 12
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=36.78 E-value=1.1e+02 Score=34.17 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=28.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHhccccccchhHH
Q 013524 140 LNIKELCDQVL----SLAEYRAQLYDYLKSRMNTVAPNLTA 176 (441)
Q Consensus 140 ~~I~~~c~~vi----~L~e~R~~L~~YL~sRM~~IAPNLta 176 (441)
..+..++++|. .-...|..+..||..+|..+.|++..
T Consensus 130 ~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~ 170 (556)
T PF05918_consen 130 GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLT 170 (556)
T ss_dssp HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS-
T ss_pred HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhh
Confidence 35677888887 44557999999999999999888766
No 13
>PF04001 Vhr1: Transcription factor Vhr1; InterPro: IPR007147 This is a family of proteins of unknown function found in yeast.
Probab=36.17 E-value=81 Score=27.37 Aligned_cols=65 Identities=20% Similarity=0.406 Sum_probs=40.5
Q ss_pred hhhhhHHHHHHHhhcCccch-hHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhc---cCcchhhhhcCcHHH
Q 013524 27 SLGLSHSLSRYKLKFSADKV-DTMIIQAIGLLD----------DLDKELNTYAMRVREWYGW---HFPELAKIIQDNILY 92 (441)
Q Consensus 27 ~lglshslsr~Klk~s~~k~-D~mIvqai~lLd----------dLDkEIn~~~~rvrEwY~~---hFPEL~~iv~d~~~Y 92 (441)
.+|..|++ |.+|.|.-++. -++.-.-..|+| +=|.+|..++.-||.=|+. .++|+++||+..++-
T Consensus 5 ~~g~Th~I-R~~LnF~De~~WK~FSsRRLELId~~~Ls~~KASEQd~~I~~iA~iLR~Ef~Yp~~~~~~FeKLV~aavQS 83 (95)
T PF04001_consen 5 GNGTTHKI-REQLNFHDERKWKRFSSRRLELIDKFDLSSRKASEQDDNIRQIAEILRTEFGYPESYSSEFEKLVTAAVQS 83 (95)
T ss_pred CCchhHHH-HHHhCCccHHHHHHHHHHHHHHHHHcCcccchhhhhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHH
Confidence 35666665 67777765543 233333344444 3467899999999987774 356677777665443
No 14
>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
Probab=30.76 E-value=1.3e+02 Score=37.11 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhccccccchhHHHhch-------------HHHHHHHHhhchhhhhhc
Q 013524 150 LSLAEYRAQLYDYLKSRMNTVAPNLTALVGE-------------LVGARLIAHGGSLLNLAK 198 (441)
Q Consensus 150 i~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~-------------~vaArLIs~AGsL~~LAK 198 (441)
+.+...++-|..-+.+-|..+|||||.+... -||.+||..||.=..-+.
T Consensus 1113 La~vT~~EPlk~~i~~n~rs~a~~l~sv~~~~ae~vd~~~~eN~~va~~lIe~a~~~k~~~~ 1174 (2005)
T COG5103 1113 LALVTAQEPLKACISGNVRSYAMKLCSVLDFSAEKVDKIAMENQDVACRLIERAGVSKVSES 1174 (2005)
T ss_pred HHHHHhHhhHHHHHhccHHHHHHHHhhhhhchHHHHHHHHHhchhHHHHHHHHhhhhhhHHH
Confidence 4456678889999999999999999995443 578999999996554333
No 15
>PRK07117 acyl carrier protein; Validated
Probab=30.15 E-value=2e+02 Score=23.72 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=20.8
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 013524 120 AQLKEAAMISMGTEVSDLDLLNIKELC 146 (441)
Q Consensus 120 ~~i~~aA~~SmGt~lse~Dl~~I~~~c 146 (441)
..+..+.....|.+|+++++..|..+-
T Consensus 43 veiv~~led~f~i~I~~~~~~~i~Tv~ 69 (79)
T PRK07117 43 AEIVIMTLESLSLKIPLVEFAGAKNIG 69 (79)
T ss_pred HHHHHHHHHHHCCccCHHHHHhcCCHH
Confidence 445667788899999999988765553
No 16
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=27.83 E-value=46 Score=35.90 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhh
Q 013524 133 EVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLL 194 (441)
Q Consensus 133 ~lse~Dl~~I~~~c~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~ 194 (441)
.++-++|..|+.+||.|-+-.+--..-..+|..||..--||+--+.=++++| +.+-.|...
T Consensus 20 ~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda-~~~NCg~~~ 80 (462)
T KOG2199|consen 20 KNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDA-CVANCGKRF 80 (462)
T ss_pred ccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHH-HHHhcchHH
Confidence 3566799999999999988777778888999999999999988777666665 445555443
No 17
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=27.75 E-value=35 Score=27.99 Aligned_cols=17 Identities=35% Similarity=0.761 Sum_probs=14.5
Q ss_pred HHHHHHHhccCcchhhh
Q 013524 69 MRVREWYGWHFPELAKI 85 (441)
Q Consensus 69 ~rvrEwY~~hFPEL~~i 85 (441)
..||+.|+..||||.+-
T Consensus 26 e~V~dfYs~~YPeLttA 42 (66)
T TIGR03738 26 EQVRDFYSAQYPELLNA 42 (66)
T ss_pred HHHHHHHhccCchheee
Confidence 46899999999999753
No 18
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=26.45 E-value=45 Score=36.11 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=10.5
Q ss_pred ccCcchHHHHhhhhHHH
Q 013524 240 PKHKGKISRSLASKTAL 256 (441)
Q Consensus 240 ~~~KgKiaR~LAaK~aL 256 (441)
.++|.+..-+|..|.+.
T Consensus 277 ~eyRk~L~~YL~~KMs~ 293 (498)
T KOG2573|consen 277 AEYRKQLSDYLKDKMSS 293 (498)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35666666666666653
No 19
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=25.58 E-value=1.8e+02 Score=25.92 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhc
Q 013524 133 EVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGG 191 (441)
Q Consensus 133 ~lse~Dl~~I~~~c~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AG 191 (441)
.+.++||..|+++||.|-.-...-.....-|..|+..=-||...+.=. |.--|+...|
T Consensus 17 ~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~-lld~lvkNcg 74 (140)
T PF00790_consen 17 SLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALT-LLDALVKNCG 74 (140)
T ss_dssp TSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHH-HHHHHHHHSH
T ss_pred CCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHcCC
Confidence 456679999999999998876666777777899999966776555433 3334555555
No 20
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.00 E-value=60 Score=35.58 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhh
Q 013524 133 EVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHG 190 (441)
Q Consensus 133 ~lse~Dl~~I~~~c~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~A 190 (441)
.++++||..|..+|++|. ...-|+.+|-||++|-
T Consensus 20 ~~~eedw~ai~~fceqin------------------------kdp~gp~lAv~LlaHK 53 (594)
T KOG1086|consen 20 SNDEEDWKAIDGFCEQIN------------------------KDPEGPLLAVRLLAHK 53 (594)
T ss_pred cchHHHHHHHHHHHHHHh------------------------cCCCCchhHHHHHHhh
Confidence 347899999999999984 2456999999999984
No 21
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=24.17 E-value=2.4e+02 Score=28.33 Aligned_cols=86 Identities=20% Similarity=0.275 Sum_probs=59.2
Q ss_pred hHHHHhcCCCCCCcchhhhhhhHHHHH--HHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhc
Q 013524 10 QLTELISGLAGQDLQPMSLGLSHSLSR--YKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQ 87 (441)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~lglshslsr--~Klk~s~~k~D~mIvqai~lLddLDkEIn~~~~rvrEwY~~hFPEL~~iv~ 87 (441)
++..++..+.+.+|+...-.|+..+.- .+|.-..+..+.++-+.+.-+++|...|..+. .+-+-|+-.=|+|..++.
T Consensus 2 ~L~~ll~~vdP~kLn~tL~ala~Al~GrG~~lg~~l~~l~~~l~~ln~~~~~l~~~l~~l~-~v~~~~a~aapdL~~~l~ 80 (267)
T PF11887_consen 2 NLTPLLDAVDPAKLNATLSALATALDGRGEQLGETLDDLNTLLATLNPRLPQLREDLRNLA-DVADTYADAAPDLLDALD 80 (267)
T ss_pred chHHHHHhCCHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHHhhhHHHHHHH
Confidence 577788888888888877777766653 23544555666666666666777776666655 556788889999988887
Q ss_pred CcHHHHHHH
Q 013524 88 DNILYAKAV 96 (441)
Q Consensus 88 d~~~YakvV 96 (441)
+-..-.++|
T Consensus 81 ~~~~~s~tL 89 (267)
T PF11887_consen 81 NLTTTSRTL 89 (267)
T ss_pred HHHHHHHHH
Confidence 744444443
No 22
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=23.63 E-value=41 Score=29.15 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=33.8
Q ss_pred HHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013524 32 HSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREW 74 (441)
Q Consensus 32 hslsr~Klk~s~~k~D~mIvqai~lLddLDkEIn~~~~rvrEw 74 (441)
|.+++..-.|+|+.||.+|-+...-++.|..++..+-..+.++
T Consensus 9 ~~F~~~~rGYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l 51 (131)
T PF05103_consen 9 KEFKKSMRGYDPDEVDDFLDELAEELERLQRENAELKEEIEEL 51 (131)
T ss_dssp ----EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CccCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444578999999999999999999999999999988754
No 23
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=23.46 E-value=1.8e+02 Score=28.89 Aligned_cols=75 Identities=13% Similarity=0.214 Sum_probs=57.3
Q ss_pred CCCcchhhhhhhHHHHHHH-hhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcchhhhhcCcHHHHHH
Q 013524 20 GQDLQPMSLGLSHSLSRYK-LKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWY--GWHFPELAKIIQDNILYAKA 95 (441)
Q Consensus 20 ~~~~~~~~lglshslsr~K-lk~s~~k~D~mIvqai~lLddLDkEIn~~~~rvrEwY--~~hFPEL~~iv~d~~~Yakv 95 (441)
..+|....-.+|++|..|+ ..|....-|.+|..++.-.-..=.||+.+|+++.+-- ...+| |...+.+.+.=++-
T Consensus 32 ~~~ls~a~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~L~~q~~~sl~~p-L~~F~kedL~~~Ke 109 (215)
T cd07631 32 QNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFP-ITQFKERDLKEILT 109 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4577888888999999998 6677777899999999988888889999999998863 35555 55565555443333
No 24
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=22.16 E-value=41 Score=31.28 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhccCcchhhhhcCcHHHHHHHHHhcC
Q 013524 63 ELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGD 101 (441)
Q Consensus 63 EIn~~~~rvrEwY~~hFPEL~~iv~d~~~YakvV~~ign 101 (441)
-+++.|.|+++||+...|+|+.| ++|..|-+.+..|-|
T Consensus 45 v~~~~~~rl~~ly~kil~~~eqI-pkn~ayRk~Tesit~ 82 (145)
T KOG3365|consen 45 VCENPHERLRDLYTKILDVLEQI-PKNAAYRKYTESITN 82 (145)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHc-chhhhhhHHHHHHHH
Confidence 35788999999999999999875 788999888776654
No 25
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=20.92 E-value=1.3e+02 Score=24.01 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhch
Q 013524 140 LNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGE 180 (441)
Q Consensus 140 ~~I~~~c~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~ 180 (441)
..|+.+.++.+.+.=.++++.++|..+. .|-|.+|.+|-.
T Consensus 2 ~~Vq~lIE~Cl~~yMsk~E~v~~L~~~a-~I~P~~T~~VW~ 41 (57)
T TIGR01589 2 DLVQNRIETCIQGYMSKEETVSFLFENA-GISPKFTRFVWY 41 (57)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHc-CCCchhHHHHHH
Confidence 3578888999999999999999998876 899999998754
No 26
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.56 E-value=2.7e+02 Score=32.64 Aligned_cols=129 Identities=17% Similarity=0.235 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHH-----------HhccCcchhhhh---cCcHHHHHHHHHhcCCCCCcccc--ccccCCHHHHHHHHHHH
Q 013524 63 ELNTYAMRVREW-----------YGWHFPELAKII---QDNILYAKAVKLMGDRSNAAKLD--FSEILPEEVEAQLKEAA 126 (441)
Q Consensus 63 EIn~~~~rvrEw-----------Y~~hFPEL~~iv---~d~~~YakvV~~ignr~n~~~~d--Ls~iL~~e~~~~i~~aA 126 (441)
+|.....||+|| |+.-|||.-+-+ ....+|+.+|..|.+..++.+.. |..||.+
T Consensus 676 die~AIefvKeq~D~eLWe~LI~~~ldkPe~~~~ll~i~~~~dpl~ii~kip~g~~IPnLrdsl~Kil~d---------- 745 (846)
T KOG2066|consen 676 DIEKAIEFVKEQDDSELWEDLINYSLDKPEFIKALLNIGEHEDPLLIIRKIPDGLEIPNLRDSLVKILQD---------- 745 (846)
T ss_pred CHHHHHHHHHhcCCHHHHHHHHHHhhcCcHHHHHHHHhhhcccHHHHHhcCCCCCCCccHHHHHHHHHHh----------
Confidence 344567788887 889999987654 56688888888888887775542 2222211
Q ss_pred hhhcCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhh
Q 013524 127 MISMGTEVSDLDLL-NIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQ 205 (441)
Q Consensus 127 ~~SmGt~lse~Dl~-~I~~~c~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQ 205 (441)
--++ .+.+-|..+ .+.++..-+..|++.++.-+.=+.-. ++.+=...+-
T Consensus 746 ----------y~~q~el~~~c~~i-~~nd~~~l~~k~~~~~~~Gv~v~~e~-------------------rc~~c~~~~l 795 (846)
T KOG2066|consen 746 ----------YNLQLELRQGCYDI-LKNDSKSLLNKFLKTARRGVLVSVEE-------------------RCSSCFEPNL 795 (846)
T ss_pred ----------hhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCeeEeehh-------------------hhhhhccccc
Confidence 1122 355555544 57888888888888888775433221 3333333333
Q ss_pred hhchhhhhhhhhhccCCCCCeeEEeeccccccC
Q 013524 206 ILGAEKALFRALKTKHATPKYGLIYHASLVGQA 238 (441)
Q Consensus 206 iLGAEKaLFraLkt~~~tPK~GlIy~s~lV~~a 238 (441)
+-|++ |... ..-+-|++||-...+..
T Consensus 796 ~~~~~---~~~~----~v~~c~h~yhk~c~~~~ 821 (846)
T KOG2066|consen 796 PSGAA---FDSV----VVFHCGHMYHKECLMME 821 (846)
T ss_pred ccCcc---ccee----eEEEccchhhhcccccH
Confidence 44554 2211 34567888887776554
No 27
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=20.30 E-value=96 Score=28.39 Aligned_cols=95 Identities=18% Similarity=0.186 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhh
Q 013524 134 VSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKAL 213 (441)
Q Consensus 134 lse~Dl~~I~~~c~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaL 213 (441)
++++||..|+++||.|-+=...=......|..||..=-||...+-=.++- -|+.-.|.-. +.-=+.+.+
T Consensus 13 l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe-~~vkNCG~~f----------h~evask~F 81 (144)
T cd03568 13 LTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLD-ACAENCGKRF----------HQEVASRDF 81 (144)
T ss_pred CCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHCCHHH----------HHHHhhHHH
Confidence 56679999999999997766666677888899998866665544322222 3444455322 211134444
Q ss_pred hhhhhccCCCCCeeEEeeccccccCCccCcchHHHHhhh
Q 013524 214 FRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLAS 252 (441)
Q Consensus 214 FraLkt~~~tPK~GlIy~s~lV~~ap~~~KgKiaR~LAa 252 (441)
...|..--..+ .++.+|.+|..+|-+
T Consensus 82 l~eL~kl~~~~-------------~~~~Vk~kil~li~~ 107 (144)
T cd03568 82 TQELKKLINDR-------------VHPTVKEKLREVVKQ 107 (144)
T ss_pred HHHHHHHhccc-------------CCHHHHHHHHHHHHH
Confidence 44443221111 467888888877654
Done!