Query 013524
Match_columns 441
No_of_seqs 243 out of 650
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 12:12:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pla_A NOP5, PRE mRNA splicing 100.0 4.8E-99 2E-103 766.6 21.0 286 2-290 88-378 (388)
2 2nnw_A NOP5/NOP56 related prot 100.0 6.6E-94 2.2E-98 728.3 21.9 277 3-287 98-376 (376)
3 3icx_A PRE mRNA splicing prote 100.0 1.8E-92 6.3E-97 686.2 20.0 243 45-290 2-245 (255)
4 2ozb_B U4/U6 small nuclear rib 100.0 9.9E-90 3.4E-94 669.5 22.1 247 42-288 12-260 (260)
5 1nt2_B Conserved hypothetical 100.0 1.8E-72 6.2E-77 546.3 11.5 206 20-288 47-257 (258)
6 3id6_A NOP5, PRE mRNA splicing 100.0 6.8E-54 2.3E-58 419.0 15.6 172 1-172 87-263 (268)
7 3gqu_A NOP5P protein; RNA bind 100.0 6.7E-52 2.3E-56 379.4 4.7 134 154-290 17-150 (169)
8 2a1j_A DNA repair endonuclease 52.0 9.9 0.00034 28.8 2.9 41 178-218 12-56 (63)
9 4fbj_A CIF, hypothetical prote 50.5 6.3 0.00021 37.8 1.9 72 187-261 99-181 (261)
10 3swh_A MUNC13-1, protein UNC-1 44.4 99 0.0034 30.8 9.6 149 54-202 85-261 (341)
11 2a1j_B DNA excision repair pro 36.1 31 0.001 27.4 3.6 35 178-212 40-77 (91)
12 1x2i_A HEF helicase/nuclease; 32.0 26 0.00089 26.1 2.5 35 178-212 22-59 (75)
13 1z00_A DNA excision repair pro 32.0 27 0.00092 27.5 2.6 42 178-219 27-73 (89)
14 3efy_A CIF (cell cycle inhibit 28.8 31 0.0011 31.7 2.7 50 194-243 44-98 (195)
15 3oiq_A Cell division control p 27.3 9.6 0.00033 36.6 -0.9 117 68-184 79-229 (233)
16 1kea_A Possible G-T mismatches 26.2 2.5E+02 0.0086 25.6 8.6 22 59-80 4-25 (221)
17 3mqm_A Probable histone-lysine 23.5 1.6E+02 0.0054 24.6 6.1 29 152-180 97-125 (126)
18 4f8c_A Cycle inhibiting factor 22.4 45 0.0015 32.2 2.6 50 194-243 138-192 (275)
19 1kft_A UVRC, excinuclease ABC 21.6 32 0.0011 26.4 1.3 28 178-205 32-59 (78)
20 3zta_A MTR, anti-sigma-factor 20.2 52 0.0018 28.2 2.4 66 46-134 9-76 (146)
No 1
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=100.00 E-value=4.8e-99 Score=766.61 Aligned_cols=286 Identities=38% Similarity=0.586 Sum_probs=278.2
Q ss_pred hhHHHHHhhHHHHhc--CCC--CCCcchhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013524 2 ELMRGVRSQLTELIS--GLA--GQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGW 77 (441)
Q Consensus 2 el~R~iR~~~~~l~~--~~~--~~~~~~~~lglshslsr~Klk~s~~k~D~mIvqai~lLddLDkEIn~~~~rvrEwY~~ 77 (441)
.++|+||.|+.+|+. |+. +.|+..|.+||+|++||+||+|+++++|+||||||++||+||+|||+|||||||||||
T Consensus 88 ~~~~~iR~~~~~~~~~~g~~~~~~d~~~~~~~l~~~~sr~kvk~~~~k~D~~Ivqai~lld~iDkein~~~~rvrewY~~ 167 (388)
T 3pla_A 88 KVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSI 167 (388)
T ss_dssp HHHHHHHHTTTTHHHHTTSSSSSHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHhHhcCCCCChHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999996 666 7799999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhhhcCcHHHHHHHHHhcCCCCCcccccccc-CCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013524 78 HFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEI-LPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYR 156 (441)
Q Consensus 78 hFPEL~~iv~d~~~YakvV~~ignr~n~~~~dLs~i-L~~e~~~~i~~aA~~SmGt~lse~Dl~~I~~~c~~vi~L~e~R 156 (441)
|||||++||+||++|+++|+.||||.|++..+|+++ +|+++++.|.++|++|||++||++|+.+|..+|++|++|+++|
T Consensus 168 hFPEL~~iV~d~~~Yak~V~~ignr~~~~~~~l~~l~l~~~~~~~I~~aA~~SmG~~ls~~dl~~I~~~~~~v~~L~e~R 247 (388)
T 3pla_A 168 HFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIR 247 (388)
T ss_dssp TCGGGTTTCCCHHHHHHHHHHTCSGGGCCHHHHHTTTCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhcCCHHHHHHHHHHhcCcccCChhhHhhcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeeccccc
Q 013524 157 AQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVG 236 (441)
Q Consensus 157 ~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLkt~~~tPK~GlIy~s~lV~ 236 (441)
++|.+||++||..||||||+|||+.||||||+|||||.+||+|||||||||||||+||+||+|+++||||||||||++|+
T Consensus 248 ~~L~~Yl~srM~~iAPNLsaLvG~~vaArLIs~AGgL~~LAK~PAstIQiLGAeKalfr~Lkt~~~tPk~G~Iy~s~~V~ 327 (388)
T 3pla_A 248 RNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIH 327 (388)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSHHHHHTSCHHHHTTSSCHHHHHHHHHHTCCCCSCSGGGGSHHHH
T ss_pred HHHHHHHHHHHHhhCCcHHHHhccHHHHHHHHHcCCHHHHhhCChHHHHHhhhhhHHHHHhccCCCCCCeeEEecCHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCcchHHHHhhhhHHHHHhhhccCCCCCChhhHHHHHHHHHHHHHhhcCC
Q 013524 237 QAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKE 290 (441)
Q Consensus 237 ~ap~~~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kl~~~~ 290 (441)
++||++||||+|+||+|||||||||+|+++ .+|.++|++|++||++|+++.
T Consensus 328 ~ap~~~rgKiaR~LAaK~aLAARiD~~~g~---~~G~~lreeie~ri~kl~e~~ 378 (388)
T 3pla_A 328 TSPRWQRGKIARALAAKLAIAARVDAFSGR---FIGDQLNEQLKKRIDEIKEKF 378 (388)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHTCCC---CCHHHHHHHHHHHHHHHHCC-
T ss_pred hCCHHHhHHHHHHHHHHHHHHHhhcccCCc---ccCHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999999853 579999999999999999864
No 2
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=100.00 E-value=6.6e-94 Score=728.26 Aligned_cols=277 Identities=38% Similarity=0.577 Sum_probs=258.0
Q ss_pred hHHHHHhhHHHHhcCCCCCCcchhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch
Q 013524 3 LMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPEL 82 (441)
Q Consensus 3 l~R~iR~~~~~l~~~~~~~~~~~~~lglshslsr~Klk~s~~k~D~mIvqai~lLddLDkEIn~~~~rvrEwY~~hFPEL 82 (441)
+++.||.|+++|+ +.|+..|.+||+|+++|+|++|+++++|+||||||+++|+||+|||+||||||||||||||||
T Consensus 98 ~~~~~R~~~~~l~----~~d~~~~~~~l~h~~sr~Kvk~~~~k~D~~Iiqai~llddlDkeIn~~~~rlrewY~~~FPEL 173 (376)
T 2nnw_A 98 AGERLRSNPEEFL----GENWFEEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPEL 173 (376)
T ss_dssp HHHHHHHCTHHHH----CSSHHHHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence 5788999999999 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCcHHHHHHHHHhcCCCCCcccccccc-CCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013524 83 AKIIQDNILYAKAVKLMGDRSNAAKLDFSEI-LPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYD 161 (441)
Q Consensus 83 ~~iv~d~~~YakvV~~ignr~n~~~~dLs~i-L~~e~~~~i~~aA~~SmGt~lse~Dl~~I~~~c~~vi~L~e~R~~L~~ 161 (441)
++||+||.+|+++|+.|||+.+++..+|++| ||+++++.|.++|.+|||++|+++|+.+|..+|+++++|+++|++|.+
T Consensus 174 ~~lV~d~~~Y~k~V~~ig~~~~l~~~~L~~i~l~~~~~~~I~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~R~~l~~ 253 (376)
T 2nnw_A 174 DELLPKHPQYVAFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLED 253 (376)
T ss_dssp HHHCCSHHHHHHHHHHTCSGGGCCSHHHHHTTCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHhCCccccCHhhHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988899999 999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeeccccccCCcc
Q 013524 162 YLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPK 241 (441)
Q Consensus 162 YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLkt~~~tPK~GlIy~s~lV~~ap~~ 241 (441)
||++||..||||||+|||+.||||||+|||||.+||+|||||||||||||+||+||+|+++||||||||||++||++||+
T Consensus 254 yl~~rM~~iAPNLsaLvG~~vaArLIs~AGgL~~LAK~PAstIQiLGAeKalf~~lkt~~~tPk~G~Iy~s~~V~~ap~~ 333 (376)
T 2nnw_A 254 YIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWW 333 (376)
T ss_dssp HHHHHHHHHCHHHHHHHCHHHHHHHHHHHTSHHHHHHSCHHHHHTTTCC-------------CCCCGGGGSHHHHTSCHH
T ss_pred HHHHHHHHhCCCHHHHhChHHHHHHHHHhCCHHHHhhCChHHHHHhccchhhHHHhccCCCCCCceEEeCCHhhccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHhhhhHHHHHhhhccCCCCCChh-hHHHHHHHHHHHHHhh
Q 013524 242 HKGKISRSLASKTALAIRYDALGDGQDNSM-GLENRAKLEARLRNLE 287 (441)
Q Consensus 242 ~KgKiaR~LAaK~aLAARvDa~~~~~d~~~-G~~~Re~Ie~rl~kl~ 287 (441)
+||||+|+||+|||||||||+|+ |.+ |.++|++|++||++|.
T Consensus 334 ~kgKiaR~LAaK~aLAARiD~~~----g~~~G~~lre~ie~rl~~ik 376 (376)
T 2nnw_A 334 QRGKIARALAGKLAIAARVDYFS----GEYIAEELKKELEARIREIK 376 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----CCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC----CcccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999995 355 9999999999999873
No 3
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.8e-92 Score=686.19 Aligned_cols=243 Identities=41% Similarity=0.642 Sum_probs=219.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhcCcHHHHHHHHHhcCCCCCcccccccc-CCHHHHHHHH
Q 013524 45 KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEI-LPEEVEAQLK 123 (441)
Q Consensus 45 k~D~mIvqai~lLddLDkEIn~~~~rvrEwY~~hFPEL~~iv~d~~~YakvV~~ignr~n~~~~dLs~i-L~~e~~~~i~ 123 (441)
++|+||||||++||+||+|||+|+||||||||||||||++||+||++|+++|+.||||.|++..+|+++ +|+++++.|.
T Consensus 2 k~D~~Iiqai~lld~iDkein~~~~rvrewY~~~FPEL~~iv~d~~~Yak~V~~ig~~~~~~~~~l~~l~l~~~~~~~i~ 81 (255)
T 3icx_A 2 KRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRIL 81 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHCCCHHHHHHHHHHTCSGGGCCHHHHHTTTCCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcchHhhcCCHHHHHHHHHHHcCCCCCChhhHHHccCCHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchh
Q 013524 124 EAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGST 203 (441)
Q Consensus 124 ~aA~~SmGt~lse~Dl~~I~~~c~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PASt 203 (441)
++|++|||++||++|+.+|..+|++|++|+++|++|.+||++||..||||||+|||+.||||||+|||||.+||+|||||
T Consensus 82 ~aa~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG~~vaArLIs~AGgL~~LAk~PAst 161 (255)
T 3icx_A 82 DAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPAST 161 (255)
T ss_dssp HHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCHHHHHHHHHHHSSHHHHTTSCHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHhccHHHHHHHHHcCCHHHHhhCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhhhhhhhhhccCCCCCeeEEeeccccccCCccCcchHHHHhhhhHHHHHhhhccCCCCCChhhHHHHHHHHHHH
Q 013524 204 VQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARL 283 (441)
Q Consensus 204 IQiLGAEKaLFraLkt~~~tPK~GlIy~s~lV~~ap~~~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl 283 (441)
||||||||+||+||+|+++||||||||||++|+++||++||||+|+||+||+||||||+|+++ .+|.++|++|++||
T Consensus 162 IqiLGAeKalfr~lkt~~~tPk~G~Iy~s~~V~~ap~~~rgkiaR~LAaK~aLAARiD~~~g~---~~G~~lre~ie~ri 238 (255)
T 3icx_A 162 IQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGR---FIGDQLNEQLKKRI 238 (255)
T ss_dssp HTTCC-------------------GGGGSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCc---ccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999853 57999999999999
Q ss_pred HHhhcCC
Q 013524 284 RNLEGKE 290 (441)
Q Consensus 284 ~kl~~~~ 290 (441)
++|+++.
T Consensus 239 ~kl~e~~ 245 (255)
T 3icx_A 239 DEIKEKF 245 (255)
T ss_dssp HHHHTTC
T ss_pred HHHhCcc
Confidence 9999864
No 4
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=100.00 E-value=9.9e-90 Score=669.53 Aligned_cols=247 Identities=27% Similarity=0.513 Sum_probs=230.9
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhcCcHHHHHHHHHhcCCCCCc--cccccccCCHHHH
Q 013524 42 SADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAA--KLDFSEILPEEVE 119 (441)
Q Consensus 42 s~~k~D~mIvqai~lLddLDkEIn~~~~rvrEwY~~hFPEL~~iv~d~~~YakvV~~ignr~n~~--~~dLs~iL~~e~~ 119 (441)
..+..+.||||||+++|+||+|||+||||||||||||||||++||+||++|+++|+.|||+.++. ..+|++||+++++
T Consensus 12 e~~~eY~~Ivqa~~lld~idkein~~~~rlre~Y~~~FPEL~~lv~~~~~Y~~~V~~ig~~~~~~~~~~~L~~iL~~~~~ 91 (260)
T 2ozb_B 12 EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATI 91 (260)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCTTCTTGGGTSCHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHHHhcCHHHHHHHHHHhCCchhhccchHHHHHHcCHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999998875 4569999999999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcC
Q 013524 120 AQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQ 199 (441)
Q Consensus 120 ~~i~~aA~~SmGt~lse~Dl~~I~~~c~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~ 199 (441)
+.|+++|.+|||++|+++|+.+|..+|++|++|+++|++|.+||++||..||||||+|||+.||||||+|||||.+||+|
T Consensus 92 ~~i~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG~~vaArLI~~AGsL~~Lak~ 171 (260)
T 2ozb_B 92 MVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKM 171 (260)
T ss_dssp HHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTS
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcHHHHHHHHHhCCHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhchhhhhhhhhhccCCCCCeeEEeeccccccCCccCcchHHHHhhhhHHHHHhhhccCCCCCChhhHHHHHHH
Q 013524 200 PGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKL 279 (441)
Q Consensus 200 PAStIQiLGAEKaLFraLkt~~~tPK~GlIy~s~lV~~ap~~~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~I 279 (441)
||||||||||||++|+||+|+++||||||||||++||++||++||||+|+||+||+||||||+|++++++.+|.++|++|
T Consensus 172 PastiqiLGaeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgk~~R~lA~K~alAaRiD~~~~~~~~~~G~~lr~~i 251 (260)
T 2ozb_B 172 PACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEI 251 (260)
T ss_dssp CHHHHTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHHHHHHHHHH
T ss_pred CcHHHHHhcccHHHHHhhccCCCCCCeeeEeCCHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 013524 280 EARLRNLEG 288 (441)
Q Consensus 280 e~rl~kl~~ 288 (441)
++||++|++
T Consensus 252 e~rl~~~~e 260 (260)
T 2ozb_B 252 ERKFDKWQE 260 (260)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhcC
Confidence 999999975
No 5
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1
Probab=100.00 E-value=1.8e-72 Score=546.27 Aligned_cols=206 Identities=25% Similarity=0.430 Sum_probs=181.3
Q ss_pred CCCcchhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhcCcHHHHHHHHHh
Q 013524 20 GQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLM 99 (441)
Q Consensus 20 ~~~~~~~~lglshslsr~Klk~s~~k~D~mIvqai~lLddLDkEIn~~~~rvrEwY~~hFPEL~~iv~d~~~YakvV~~i 99 (441)
..|+..+.++|+|++||+||+|++++.|+||||||+++|+||++||.|||||||||+| |
T Consensus 47 ~~~y~~~l~~~~~~~sr~kvk~~~~~~D~~Iiqai~lld~idkein~~~~rvrewY~~--~------------------- 105 (258)
T 1nt2_B 47 GKDYYRILRKTALAVSEKMVEKELRREDRYVVALVKALEEIDESINMLNEKLEDIRAV--K------------------- 105 (258)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHTT--C-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--C-------------------
Confidence 5788889999999999999999999999999999999999999999999999999998 0
Q ss_pred cCCCCCccccccccCCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhc
Q 013524 100 GDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVG 179 (441)
Q Consensus 100 gnr~n~~~~dLs~iL~~e~~~~i~~aA~~SmGt~lse~Dl~~I~~~c~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG 179 (441)
+| +|++ .+|++|++|+++|++|.+||++||..||||||+|||
T Consensus 106 ----------------------------~S---~ise-------~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG 147 (258)
T 1nt2_B 106 ----------------------------ES---EITE-------KFEKKIRELRELRRDVEREIEEVMEKIAPNMTELVG 147 (258)
T ss_dssp ----------------------------CC---TTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHC
T ss_pred ----------------------------CC---cCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHhC
Confidence 12 3443 899999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhh---hcc--CCCCCeeEEeeccccccCCccCcchHHHHhhhhH
Q 013524 180 ELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRAL---KTK--HATPKYGLIYHASLVGQAAPKHKGKISRSLASKT 254 (441)
Q Consensus 180 ~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraL---kt~--~~tPK~GlIy~s~lV~~ap~~~KgKiaR~LAaK~ 254 (441)
+.||||||+|||||.+||+|||||||||||||++|+|| +|+ ++||||||||||++||++||++||||+|+||+||
T Consensus 148 ~~vaArLI~~AGgL~~LAk~PAstIqiLGAeKalf~~l~~~~t~~~~~~pk~G~Iy~s~~V~~ap~~~rgK~aR~LAaK~ 227 (258)
T 1nt2_B 148 AKVAAKLLERAGSMERLVRLPASKIQVIGAEKSLYKAFARMKKGKKAKIPKHGIIFLHPFIRTLPKAKRGKMARFLAAKL 227 (258)
T ss_dssp HHHHHHHHHHHCSHHHHHTCCHHHHTTSSCC--------------------CCGGGGSHHHHTSCSSSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCCHHHHhhCCHHHHHHhccchHHHhhhhccccccCCCCCCcceEecCHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 998 8999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCChhhHHHHHHHHHHHHHhhc
Q 013524 255 ALAIRYDALGDGQDNSMGLENRAKLEARLRNLEG 288 (441)
Q Consensus 255 aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kl~~ 288 (441)
+||||||+|+ |.+|.++|++|++||++|++
T Consensus 228 aLAARiD~~~----g~~G~~lre~ie~rl~k~~e 257 (258)
T 1nt2_B 228 AIAAKIDYFR----GEIDESLYESIRRRYEELRR 257 (258)
T ss_dssp HHHHHHHHHT----CSCCTHHHHHHHHHHHHCC-
T ss_pred HHHHHHHhhC----CcccHHHHHHHHHHHHHHhh
Confidence 9999999996 57899999999999999976
No 6
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.8e-54 Score=419.02 Aligned_cols=172 Identities=34% Similarity=0.519 Sum_probs=163.8
Q ss_pred ChhHHHHHhhHHHHhc--CCC--CCCcchhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013524 1 MELMRGVRSQLTELIS--GLA--GQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYG 76 (441)
Q Consensus 1 ~el~R~iR~~~~~l~~--~~~--~~~~~~~~lglshslsr~Klk~s~~k~D~mIvqai~lLddLDkEIn~~~~rvrEwY~ 76 (441)
.+++|+||.|+.+|+. |+. +.|+..|++||+|+|||+||+|+++++|+||||||+|||+||+|||+|+||||||||
T Consensus 87 ~~~~~~iR~~~~~l~~~~G~~~~~~d~~~~~lgl~hs~sR~Klk~~~~k~D~mIIQai~llDdlDkeiN~~~mRvREWY~ 166 (268)
T 3id6_A 87 SKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYS 166 (268)
T ss_dssp CHHHHHHHHTTTHHHHHTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3689999999999996 666 778999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhhcCcHHHHHHHHHhcCCCCCcccccccc-CCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013524 77 WHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEI-LPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEY 155 (441)
Q Consensus 77 ~hFPEL~~iv~d~~~YakvV~~ignr~n~~~~dLs~i-L~~e~~~~i~~aA~~SmGt~lse~Dl~~I~~~c~~vi~L~e~ 155 (441)
||||||++||+||.+||++|+.||||.|++..+|++| ||+++++.|++||.+|||++||+.||.+|..+|++|++|++|
T Consensus 167 ~hFPEL~kiV~d~~~Yak~V~~ig~r~~l~~~~l~~i~l~~~~~~~I~~aA~~SmG~~ise~DL~~I~~~a~~v~~L~e~ 246 (268)
T 3id6_A 167 IHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNI 246 (268)
T ss_dssp TTCTTHHHHCCCHHHHHHHHHHHCSTTSCCHHHHGGGTCCHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccHHHhccCHHHHHHHHHHhCCcccCCcccHhhcCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccc
Q 013524 156 RAQLYDYLKSRMNTVAP 172 (441)
Q Consensus 156 R~~L~~YL~sRM~~IAP 172 (441)
|++|.+||++||..+|-
T Consensus 247 R~~L~~Yl~srM~~~~~ 263 (268)
T 3id6_A 247 RRNLNNYLEGVMKEVAH 263 (268)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999874
No 7
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=100.00 E-value=6.7e-52 Score=379.41 Aligned_cols=134 Identities=44% Similarity=0.630 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeecc
Q 013524 154 EYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHAS 233 (441)
Q Consensus 154 e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLkt~~~tPK~GlIy~s~ 233 (441)
..|.+|.+||++||..||||||+|||+.||||||+|||||.+||+|||||||+|||||++|+||+|+++||||||||||+
T Consensus 17 ~~~~~L~~Yl~srM~~iAPNLsaLvG~~vaArLI~~AGgL~~LAK~PAsnIqvLGAeKalf~~l~t~~~~pk~G~Iy~s~ 96 (169)
T 3gqu_A 17 IGAGGLEDYIDKAMDDVAPNLKALVGAKLGARLISLAGGLKELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYP 96 (169)
T ss_dssp ---CCHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHTSHHHHHTCCSHHHHTSCC----------------CCGGGGSH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHhChHHHHHHHHHhCCHHHHhhCCHHHHHHHhhhhHHHHHHhcCCCCCCCCEEEeCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccCcchHHHHhhhhHHHHHhhhccCCCCCChhhHHHHHHHHHHHHHhhcCC
Q 013524 234 LVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKE 290 (441)
Q Consensus 234 lV~~ap~~~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kl~~~~ 290 (441)
+|+++|+++||||+|+||+||+||||||+|+++ .+|..+|++|+.||++|.+.-
T Consensus 97 lV~~~p~~~rgK~aR~LAaK~aLAARiD~~~g~---~~G~~lreeie~riekl~e~~ 150 (169)
T 3gqu_A 97 AINRSPWWQRGKIARALAGKLAIAARVDYFSGE---YIAEELKKELEARIKEIKEKY 150 (169)
T ss_dssp HHHTSCTTTHHHHHHHHHHHHHHHHHHHHHTCC---CCCTTHHHHHHHHHHHCCCSC
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCc---ccCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999853 579999999999999999754
No 8
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=52.01 E-value=9.9 Score=28.78 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=33.5
Q ss_pred hchHHHHHHHHhhchhhhhhcCCchhh-hhhchhh-h--hhhhhh
Q 013524 178 VGELVGARLIAHGGSLLNLAKQPGSTV-QILGAEK-A--LFRALK 218 (441)
Q Consensus 178 VG~~vaArLIs~AGsL~~LAK~PAStI-QiLGAEK-a--LFraLk 218 (441)
||+.-..+|+.|.||+.++..++--.| +++|.+. | ++..|+
T Consensus 12 IG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 12 VNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIH 56 (63)
T ss_dssp CCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHh
Confidence 688999999999999999999998777 5678655 3 566664
No 9
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=50.46 E-value=6.3 Score=37.82 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=44.4
Q ss_pred HHhhchh------hhhhcCCchhhhhhchhh-hhhhh----hhccCCCCCeeEEeeccccccCCccCcchHHHHhhhhHH
Q 013524 187 IAHGGSL------LNLAKQPGSTVQILGAEK-ALFRA----LKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTA 255 (441)
Q Consensus 187 Is~AGsL------~~LAK~PAStIQiLGAEK-aLFra----Lkt~~~tPK~GlIy~s~lV~~ap~~~KgKiaR~LAaK~a 255 (441)
++.+|+| +.|+.+|||.=-|+=-.- .|-++ +-.. ..+..||||||+|=+.+-|.+| ++--+..|.+
T Consensus 99 ~~Qt~~l~~~~faE~l~~L~s~kNyV~~VNDgrLGH~flIDiPa~-~~~r~ayiyQSDLG~Galp~lr--~eDWm~~rg~ 175 (261)
T 4fbj_A 99 MAQTGKIDGNEFAESVDQLSSAKNYVALVNDRRLGHMFLIDIPSN-DQETVGYIYQSDLGQGALPPLK--IADWLNSRGK 175 (261)
T ss_dssp HHHHSCBCHHHHHHHGGGSCTTCEEEEEEEETTTTEEEEEEECCC-SSCCEEEEECCBCSCSSSCCBC--HHHHHHHGGG
T ss_pred hhhhcccchHHHHHHHhhhhcccCEEEEEcCCCcceeEEEecCCC-CCCcceEEEecccCCCCCccee--HHHHHhhcCC
Confidence 4677888 578899999755442221 12221 2222 2388999999999999999875 4444444444
Q ss_pred HHHhhh
Q 013524 256 LAIRYD 261 (441)
Q Consensus 256 LAARvD 261 (441)
=+.-+|
T Consensus 176 ~pIsLd 181 (261)
T 4fbj_A 176 DAVSLN 181 (261)
T ss_dssp SEEEHH
T ss_pred CCccHH
Confidence 333333
No 10
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=44.40 E-value=99 Score=30.81 Aligned_cols=149 Identities=14% Similarity=0.034 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcch----hhhhcCcHHHHHHHHH-hcCCCCCccc--cccccCCH--HHHHHHHH
Q 013524 54 IGLLDDLDKELNTYAMRVREWYGWHFPEL----AKIIQDNILYAKAVKL-MGDRSNAAKL--DFSEILPE--EVEAQLKE 124 (441)
Q Consensus 54 i~lLddLDkEIn~~~~rvrEwY~~hFPEL----~~iv~d~~~YakvV~~-ignr~n~~~~--dLs~iL~~--e~~~~i~~ 124 (441)
..++++|-+-+..|+..|+.-+..+...- -=++-||++|+|+... +-..+....+ ++++++.+ .....+..
T Consensus 85 t~l~~~i~~~~~~Y~~~l~~~~~~~~~~e~~~~~Cv~lNNie~lR~~L~~l~~~l~~~~l~~~~~~~~~~lq~~l~~vl~ 164 (341)
T 3swh_A 85 RRFAKTISNVLLQYADIVSKDFASYCSKEKEKVPCILMNNTQQLRVQLEKMFEAMGGKELDAEASGTLKELQVKLNNVLD 164 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhcccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777765543322211 2245589999998753 3222222111 12222211 11111222
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHH
Q 013524 125 AAMISMGTEVSDLDLLNIKELCDQ------------------VLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARL 186 (441)
Q Consensus 125 aA~~SmGt~lse~Dl~~I~~~c~~------------------vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArL 186 (441)
-+..+.|..+.+.=-..|..++.. -.+.++.-.-|.+||...+..++-+|.-=+-..|--.|
T Consensus 165 ~l~~~~~~~~~~~i~~~v~~m~~~l~~i~~~~~~~~~~~~~~~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~l 244 (341)
T 3swh_A 165 ELSHVFATSFQPHIEECVRQMGDILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKEL 244 (341)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHTCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333333222333443321 13345556677788888777776666554444444333
Q ss_pred HHhh-chhhhhhcCCch
Q 013524 187 IAHG-GSLLNLAKQPGS 202 (441)
Q Consensus 187 Is~A-GsL~~LAK~PAS 202 (441)
-.+. .++..+.-+|..
T Consensus 245 W~~~l~~l~~~i~lP~~ 261 (341)
T 3swh_A 245 WKLVMNTMERTIVLPPE 261 (341)
T ss_dssp HHHHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHHcccch
Confidence 3222 245555556655
No 11
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=36.10 E-value=31 Score=27.38 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=28.0
Q ss_pred hchHHHHHHHHhhchhhhhhcCCchhhhh---hchhhh
Q 013524 178 VGELVGARLIAHGGSLLNLAKQPGSTVQI---LGAEKA 212 (441)
Q Consensus 178 VG~~vaArLIs~AGsL~~LAK~PAStIQi---LGAEKa 212 (441)
||+..+.+|+.+.|++.+|...+...++- +|..++
T Consensus 40 IG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a 77 (91)
T 2a1j_B 40 VNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKA 77 (91)
T ss_dssp CCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHH
Confidence 68999999999999999998887766643 566554
No 12
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=31.99 E-value=26 Score=26.07 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=26.6
Q ss_pred hchHHHHHHHHhhchhhhhhcCCchhhhh---hchhhh
Q 013524 178 VGELVGARLIAHGGSLLNLAKQPGSTVQI---LGAEKA 212 (441)
Q Consensus 178 VG~~vaArLIs~AGsL~~LAK~PAStIQi---LGAEKa 212 (441)
||+.++.+|+.+.|++.+|...+...+.- +|..++
T Consensus 22 iG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a 59 (75)
T 1x2i_A 22 VSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIA 59 (75)
T ss_dssp CCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHH
Confidence 68889999999999999988776655542 565544
No 13
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=31.96 E-value=27 Score=27.48 Aligned_cols=42 Identities=31% Similarity=0.426 Sum_probs=31.4
Q ss_pred hchHHHHHHHHhhchhhhhhcCCchhhhh---hchhhh--hhhhhhc
Q 013524 178 VGELVGARLIAHGGSLLNLAKQPGSTVQI---LGAEKA--LFRALKT 219 (441)
Q Consensus 178 VG~~vaArLIs~AGsL~~LAK~PAStIQi---LGAEKa--LFraLkt 219 (441)
||+..+-+|+.+.|++.+|...+...++- +|..++ +...|..
T Consensus 27 IG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 27 VNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp CCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998888776643 576655 3444443
No 14
>3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli}
Probab=28.75 E-value=31 Score=31.75 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=32.7
Q ss_pred hhhhcCCchhhhhhchhh-hhh----hhhhccCCCCCeeEEeeccccccCCccCc
Q 013524 194 LNLAKQPGSTVQILGAEK-ALF----RALKTKHATPKYGLIYHASLVGQAAPKHK 243 (441)
Q Consensus 194 ~~LAK~PAStIQiLGAEK-aLF----raLkt~~~tPK~GlIy~s~lV~~ap~~~K 243 (441)
+.|+.||+|+=-|+=-.- .|- --+-...+.+.-||||||+|=+.+-|.+|
T Consensus 44 E~l~~l~s~knyV~~VNDgrLGH~fliDiP~~~n~~r~ayiyQSDLG~galp~lr 98 (195)
T 3efy_A 44 ERLSCMPECKSFVLRVNDGALGHAYIVDIPKGENSCRPAFLYQSDLGEGVTRKLR 98 (195)
T ss_dssp HHHHTCCTTSEEEEEEEETTTTEEEEEEECSCCSTTCEEEEECCBCSSSSSCCBC
T ss_pred HHHhhhhcccCEEEEEcCCCcceeEEEecCCCCCCCcceEEEecccCCcccccee
Confidence 356778888654432221 121 22334457889999999999999998775
No 15
>3oiq_A Cell division control protein 13; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae} PDB: 3oip_A 3nws_A 3nwt_A
Probab=27.32 E-value=9.6 Score=36.59 Aligned_cols=117 Identities=11% Similarity=0.228 Sum_probs=55.0
Q ss_pred HHHHHHHHhccCcchhh-------hhcCcHH--HHHHHHHhcC---CCCCccccccccCCHHHHHHHHHHHhhhc-CCCC
Q 013524 68 AMRVREWYGWHFPELAK-------IIQDNIL--YAKAVKLMGD---RSNAAKLDFSEILPEEVEAQLKEAAMISM-GTEV 134 (441)
Q Consensus 68 ~~rvrEwY~~hFPEL~~-------iv~d~~~--YakvV~~ign---r~n~~~~dLs~iL~~e~~~~i~~aA~~Sm-Gt~l 134 (441)
...|..||+.-+|||.. .+-+++. +.=.|..-|. ..+-..+-|.+|.|=++..++..+.+.|. ++..
T Consensus 79 isLL~~~Fdidip~ld~~~~~~~~F~i~dIHl~kLCFv~Ck~~yvt~~~k~sl~LedIkPidl~s~~~~~~~~s~~~~~~ 158 (233)
T 3oiq_A 79 ISLLCQYFDIELPDLDSDSGASPTVILRDIHLERLCFSSCKALYVSKHGNYTLFLEDIKPLDLVSVISTISTKSTNSSKH 158 (233)
T ss_dssp HHHHHHHTTCCCCC--------CCEEECCGGGTCCCEEEEEEEEEEETTEEEEEEEEEEECCHHHHHHHHHHC-------
T ss_pred HHHHHHHcCCCchhcccccccCCCccHHHhhhheeeeEEEEEEEEecCCCceEEeeecccccHHHHHHHhhccCcccccc
Confidence 34678899999999941 1112111 1111111110 11212234777888777777776655443 3444
Q ss_pred CHHHH-------HHHHHHHHHHHHHHH-------------HHHHHHHHHHhccccccchhHHH-hchHHHH
Q 013524 135 SDLDL-------LNIKELCDQVLSLAE-------------YRAQLYDYLKSRMNTVAPNLTAL-VGELVGA 184 (441)
Q Consensus 135 se~Dl-------~~I~~~c~~vi~L~e-------------~R~~L~~YL~sRM~~IAPNLtaL-VG~~vaA 184 (441)
+..+| ..|..+-+.++.+.. |-.++.+||+.|+..+.-+.-++ +-|+.+|
T Consensus 159 ~~~~~~~~~~~~~ti~~If~NLI~l~~~~~~~FkF~kL~ny~~ef~~~iq~rq~~l~~~~~~~~~NPlF~~ 229 (233)
T 3oiq_A 159 SSSELISECDLNNSLVDIFNNLIEMNRDEKNRFKFVKLIHYDIELKKFVQDQQKVLSQKSKAAAINPFFVP 229 (233)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHCSSSSCCGGGSTTCCHHHHHHHHHHHTTC---------------
T ss_pred ccchhhhhccchhHHHHHHHHHHHhccccCCCceEEeccCCcHHHHHHHHHHHHHHHHHhhhhccCCCccc
Confidence 44444 567777777777766 56899999999999988777443 6666655
No 16
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=26.19 E-value=2.5e+02 Score=25.65 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCc
Q 013524 59 DLDKELNTYAMRVREWYGWHFP 80 (441)
Q Consensus 59 dLDkEIn~~~~rvrEwY~~hFP 80 (441)
-++.++..+..+|.+||..+..
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~ 25 (221)
T 1kea_A 4 ATNKKRKVFVSTILTFWNTDRR 25 (221)
T ss_dssp THHHHHHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhhh
Confidence 3556778899999999988643
No 17
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=23.46 E-value=1.6e+02 Score=24.59 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhccccccchhHHHhch
Q 013524 152 LAEYRAQLYDYLKSRMNTVAPNLTALVGE 180 (441)
Q Consensus 152 L~e~R~~L~~YL~sRM~~IAPNLtaLVG~ 180 (441)
+...=..|..+...+|..+.|.|-.++|+
T Consensus 97 ~~~~A~~L~~~f~~~~~~~~~~l~~i~ge 125 (126)
T 3mqm_A 97 VGRDVCRLRKAYYNARHEASAQIDEIVGE 125 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33445678888899999999999999996
No 18
>4f8c_A Cycle inhibiting factor; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.95A {Yersinia pseudotuberculosis}
Probab=22.42 E-value=45 Score=32.17 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=32.8
Q ss_pred hhhhcCCchhhhhhchhh-hhh----hhhhccCCCCCeeEEeeccccccCCccCc
Q 013524 194 LNLAKQPGSTVQILGAEK-ALF----RALKTKHATPKYGLIYHASLVGQAAPKHK 243 (441)
Q Consensus 194 ~~LAK~PAStIQiLGAEK-aLF----raLkt~~~tPK~GlIy~s~lV~~ap~~~K 243 (441)
+.|+.||+|.=-|+=-.- .|- --+-...+.+.-||||||+|=+.+-|.+|
T Consensus 138 E~l~~L~s~KnyV~~VNDgrLGH~flIDiPa~~n~~r~ayiyQSDLG~Galp~lr 192 (275)
T 4f8c_A 138 ERLASLPAHKNFILRVNDGGLGHAYVIDFPATTNPSRDAFLYQSDLGEGVTREVR 192 (275)
T ss_dssp HHHHTCCTTSEEEEEEEETTTTEEEEEEECCCSSSSCEEEEECCBCCCSSSCCBC
T ss_pred HHHhhhhcccCEEEEEcCCCcceeEEEecCCCCCCCcceEEEecccCCCCCccee
Confidence 356778888654432221 121 22234457788999999999999999875
No 19
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=21.59 E-value=32 Score=26.38 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=23.8
Q ss_pred hchHHHHHHHHhhchhhhhhcCCchhhh
Q 013524 178 VGELVGARLIAHGGSLLNLAKQPGSTVQ 205 (441)
Q Consensus 178 VG~~vaArLIs~AGsL~~LAK~PAStIQ 205 (441)
||+..+-+|+.+.|++.+|...+...++
T Consensus 32 IG~~~A~~Ll~~fgsl~~l~~a~~eeL~ 59 (78)
T 1kft_A 32 VGPKRRQMLLKYMGGLQGLRNASVEEIA 59 (78)
T ss_dssp CSSSHHHHHHHHHSCHHHHHHCCHHHHT
T ss_pred CCHHHHHHHHHHcCCHHHHHHCCHHHHH
Confidence 7899999999999999988887766654
No 20
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=20.23 E-value=52 Score=28.24 Aligned_cols=66 Identities=21% Similarity=0.386 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhcCcHHHHHHHHHhcCCCCCccccccccCCHHHHHHHHHH
Q 013524 46 VDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEA 125 (441)
Q Consensus 46 ~D~mIvqai~lLddLDkEIn~~~~rvrEwY~~hFPEL~~iv~d~~~YakvV~~ignr~n~~~~dLs~iL~~e~~~~i~~a 125 (441)
.++.+..+|+||..- +.-|.||.|.+.+. .+||+.+.. ...-+.+-..+++.+|..-
T Consensus 9 aenivekainllske------------dqagvhfneisalt---rdfcrails--------dleqsgfttselekeiadk 65 (146)
T 3zta_A 9 AENIVEKAINLLSKE------------DQAGVHFNEISALT---RDFCRAILS--------DLEQSGFTTSELEKEIADK 65 (146)
T ss_dssp THHHHHHHHHHHHTS------------CCTTCCHHHHHHHH---HHHHHHHHH--------HHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchh------------hhcCccHHHHHHHH---HHHHHHHHH--------HHHHcCCcHHHHHHHHHHH
Confidence 455666666666543 35799999998775 469998863 2223445555555555433
Q ss_pred Hh--hhcCCCC
Q 013524 126 AM--ISMGTEV 134 (441)
Q Consensus 126 A~--~SmGt~l 134 (441)
.. ...|..|
T Consensus 66 vkimfaqgyhi 76 (146)
T 3zta_A 66 VKIMFAQGYHI 76 (146)
T ss_dssp HHHHHHHTCCT
T ss_pred HHHHHhccchH
Confidence 32 2346554
Done!