Query 013529
Match_columns 441
No_of_seqs 135 out of 1033
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:46:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02491 carotenoid 9,10(9',10 100.0 7E-110 2E-114 874.8 48.0 440 1-441 106-545 (545)
2 PLN02258 9-cis-epoxycarotenoid 100.0 4E-106 9E-111 848.1 45.9 416 1-438 168-589 (590)
3 COG3670 Lignostilbene-alpha,be 100.0 5E-103 1E-107 775.0 33.1 401 1-433 77-489 (490)
4 PF03055 RPE65: Retinal pigmen 100.0 1.1E-97 2E-102 781.4 36.4 408 1-432 56-486 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 2.9E-91 6.3E-96 743.3 42.5 406 1-432 117-610 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 1.9E-56 4.1E-61 464.5 27.4 411 1-438 75-581 (582)
7 KOG1285 Beta, beta-carotene 15 99.8 1.2E-20 2.5E-25 197.3 10.9 251 1-254 161-418 (582)
8 COG3823 Glutamine cyclotransfe 45.3 17 0.00036 34.2 2.4 36 75-113 96-132 (262)
9 PF02239 Cytochrom_D1: Cytochr 41.8 1.3E+02 0.0029 30.6 8.7 74 311-418 46-119 (369)
10 PF10282 Lactonase: Lactonase, 38.0 2.3E+02 0.005 28.2 9.7 98 78-182 47-162 (345)
11 PF02736 Myosin_N: Myosin N-te 33.0 45 0.00098 22.6 2.5 30 367-403 3-32 (42)
12 PF09843 DUF2070: Predicted me 31.6 54 0.0012 29.8 3.6 50 355-409 38-87 (179)
13 TIGR02276 beta_rpt_yvtn 40-res 31.6 1.4E+02 0.003 19.2 4.8 28 395-425 12-39 (42)
14 PF13570 PQQ_3: PQQ-like domai 27.9 62 0.0014 21.1 2.5 27 70-96 12-38 (40)
15 PF02239 Cytochrom_D1: Cytochr 23.7 1.3E+02 0.0028 30.7 5.0 87 300-419 272-359 (369)
16 PF14839 DOR: DOR family 20.0 95 0.0021 29.2 2.9 14 378-391 3-16 (216)
No 1
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=7.1e-110 Score=874.80 Aligned_cols=440 Identities=83% Similarity=1.341 Sum_probs=383.6
Q ss_pred CeeEEEEeCCcEEEEeeeecChhhHhhhhcCCceeeccCCCCCchhhHHHHHHHhhhhhcccccCCCCCcceeEeEEECC
Q 013529 1 MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHG 80 (441)
Q Consensus 1 mv~~~~f~~G~v~y~~Rfv~T~~~~~e~~ag~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~V~~~~g 80 (441)
|||+|+|+||+|+|+||||||++|++|+++|+.+|..++..++.+|.++..+..+|...+..+....+|+|||||++|+|
T Consensus 106 Mlha~~f~~G~a~y~~RfVrT~~~~~E~~ag~~~~~~~~~~~g~~g~~~~~~~~~r~~~~~~~~~~~~~~ANT~vi~~~g 185 (545)
T PLN02491 106 MIHGMRIKDGKATYVSRYVKTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIYHHG 185 (545)
T ss_pred cEEEEEEcCCcEEEEeeeecccchhhhhhcCcccccccccccccchhhhhhhhhhhccccccccccCCCCCceeEEEECC
Confidence 99999999999999999999999999999999999988877777776655555555443322222236899999999999
Q ss_pred EEEEEecCCCCEEEecCCCCCccccccccCCCCCCCCCCCCceecCCCCcEEEEEeeCCCCeEEEEEECCCCCeeeeEEE
Q 013529 81 KLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPI 160 (441)
Q Consensus 81 ~LlAl~E~g~P~~ld~~~~~tLeT~g~~~~~~~l~~~~tAHp~~Dp~tg~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~ 160 (441)
|||||||+|.||++++.+++||||+|..||+|+|..+||||||+||.|||+++|||+..+++++|+++|++|++.+.+++
T Consensus 186 rLlAl~E~g~Py~l~~~Dp~tLeT~G~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~~~p~~~y~~~~~~G~~~~~v~i 265 (545)
T PLN02491 186 KLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMHDPVPI 265 (545)
T ss_pred EEEEEEcCCCCeEecCCCCCCcceeeecccCCccCcccccCccCcCCCCCEEEEEecCCCCcEEEEEECCCCcCcceeEe
Confidence 99999999999998762226999999999999998899999999999999999999987789999999999999988999
Q ss_pred eeCCccceeeeeecCCEEEEEeCCccccHHHHHHcCCeeeEEcCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEccccce
Q 013529 161 TMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAW 240 (441)
Q Consensus 161 ~~~~~~~~Hdf~iTeny~V~~~~P~~~~~~~~l~~~~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~fH~~NAy 240 (441)
++|.++|||||+|||||+||+++|+.+++.+|+++++.++.|+|++++||+||||++++.+.++||++|+||+||++|||
T Consensus 266 ~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~ 345 (545)
T PLN02491 266 TISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAW 345 (545)
T ss_pred ecCCCceeeeeEecCCEEEEEECCcccCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCcc
Confidence 99999999999999999999999999999999887788999999999999999998755568999999999999999999
Q ss_pred ecCCCeEEEEEEeccCCCCcccCCccccccccCcccEEEEEEeCCCCCeeEEecCCCCCcCCccCCCCCCCCCcEEEeec
Q 013529 241 EEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSI 320 (441)
Q Consensus 241 E~~~g~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~g~~~~~~l~~~~~EfP~in~~~~G~~~ry~Y~~~ 320 (441)
|++ |+||+|+|++++++++...+...+..+...++|+|||||+++|+++++.|++.++|||+||+++.||+|||+|+++
T Consensus 346 Ee~-~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tg~~~~~~l~~~~~EfP~In~~~~Grk~ry~Y~~~ 424 (545)
T PLN02491 346 EEE-DEVVLITCRLENPDLDMVNGKVKEKLENFGNELYEMRFNMKTGAASQKKLSASAVDFPRVNESYTGRKQRYVYGTI 424 (545)
T ss_pred ccC-CeEEEEEeccCCCccccccccccccccccCceEEEEEEECCCCceeeeccCCcccccCccCHHHCCCcccEEEEec
Confidence 987 8999999999886654333332222334568999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCeEEEEecccCCCCCceeeeecCceeeEEEcCCCCcCcceEEeeCCCCCCCCCCCcEEEEEEEeCCCCeeEEE
Q 013529 321 LENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVY 400 (441)
Q Consensus 321 ~~~~~~~~~l~k~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~EdDG~ll~~v~d~~~~~s~L~ 400 (441)
.++.+.+++|+|+|++++..+|+.+.+.+++..+.|++++++|+|||+||||+++.+++|||||||++|+|.++++|+|+
T Consensus 425 ~~~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~~~S~l~ 504 (545)
T PLN02491 425 LDSIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVN 504 (545)
T ss_pred cCCccCcCeEEEEEecccccCCccccccccceeEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCCCcceEE
Confidence 77666789999999997533344322223334457999999999999999997541258999999999999999999999
Q ss_pred EEeCCCCCCCceEEEEcCCcCCCCCCccccChhhHHHhhcC
Q 013529 401 VIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL 441 (441)
Q Consensus 401 VlDA~~l~~gpvAr~~Lp~~vP~gfHG~w~~~~~~~~~~~~ 441 (441)
||||++|++|||||++||++||+||||+|++++||++|+.+
T Consensus 505 VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~~~l~~~~~~ 545 (545)
T PLN02491 505 VIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 545 (545)
T ss_pred EEeCCCCCCCeeEEEECCCCCCCCccccCcCHHHHHHhhcC
Confidence 99999999999999999999999999999999999988754
No 2
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=4.1e-106 Score=848.06 Aligned_cols=416 Identities=41% Similarity=0.747 Sum_probs=365.6
Q ss_pred CeeEEEEeCCcEEEEeeeecChhhHhhhhcCCceeec-cCCCCCchhhHHHHHHHhhhhhcccccCCCCCcceeEeEEEC
Q 013529 1 MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTK-IGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHH 79 (441)
Q Consensus 1 mv~~~~f~~G~v~y~~Rfv~T~~~~~e~~ag~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~V~~~~ 79 (441)
|||+|+|+||+|+|+||||||++|++|+++||++|.+ +|+..+..+..+..+...|...+..+....+|+|||||++|+
T Consensus 168 Mvhav~f~dG~a~y~~RfVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~ 247 (590)
T PLN02258 168 MVHAVRIGNGSASYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFN 247 (590)
T ss_pred eEEEEEECCCeEEEEeeeecchhHHHHHhcCCcccccccccccccccccccchhhccccccccccccccCCCceeEEEEC
Confidence 9999999999999999999999999999999999986 887654444444444444444444443334689999999999
Q ss_pred CEEEEEecCCCCEEEecCCCCCccccccccCCCCCCCCCCCCceecCCCCcEEEEEeeC-CCCeEEEEEECCCCCeeeeE
Q 013529 80 GKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQ-TPPYVTYRVISKDGFMHDPV 158 (441)
Q Consensus 80 g~LlAl~E~g~P~~ld~~~~~tLeT~g~~~~~~~l~~~~tAHp~~Dp~tg~~~~~g~~~-~~~~~~~~~~~~~g~~~~~~ 158 (441)
||||||||+|.||++|++++.||||+|.+||+|+|..+||||||+||.|||+++|+|+. ..|+++|+++|++|++.+.+
T Consensus 248 grLlAL~E~g~Py~l~~d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~ 327 (590)
T PLN02258 248 GRLLAMSEDDLPYQVRITGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDV 327 (590)
T ss_pred CEEEEEEcCCCceEecCCCCCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEeeE
Confidence 99999999999999998765699999999999999889999999999999999999985 46899999999999999999
Q ss_pred EEeeCCccceeeeeecCCEEEEEeCCccccHHHHHHcCCeeeEEcCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEcccc
Q 013529 159 PITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNAN 238 (441)
Q Consensus 159 ~~~~~~~~~~Hdf~iTeny~V~~~~P~~~~~~~~l~~~~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~fH~~N 238 (441)
++++|.++|||||+|||||+||+++|+.+++.+|+. |+.++.|+|++++||+||||++++...++||++|+||+||++|
T Consensus 328 ~i~lp~p~~~HDFaiTenY~Vf~d~Pl~~~~~~~~~-g~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~N 406 (590)
T PLN02258 328 EIPLDQPTMMHDFAITENFVVIPDQQVVFKLSEMIR-GGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWN 406 (590)
T ss_pred EeeCCCCccccceeccCceEEEEccCceEcHHHHhh-CCCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEeccc
Confidence 999999999999999999999999999999999875 5678999999999999999997555689999999999999999
Q ss_pred ceecC-CCeEEEEEEeccCCCCcccCCccccccccCcccEEEEEEeCCCCCeeEEecCC---CCCcCCccCCCCCCCCCc
Q 013529 239 AWEEE-EDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSP---ACVDFPRINEHYMGRKQR 314 (441)
Q Consensus 239 AyE~~-~g~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~g~~~~~~l~~---~~~EfP~in~~~~G~~~r 314 (441)
|||++ +|+||+|.|++.+++. .+. +......++|+||||||++|+++.+.+.+ .++|||+||++|.||+||
T Consensus 407 A~Ee~~~~~VVvd~~~~~~~~~-~~~----~~~~~~~~~L~r~ridl~tg~~~~~~l~~~~~~~~EFP~In~~~~Grk~R 481 (590)
T PLN02258 407 AWEEPETDEVVVIGSCMTPPDS-IFN----ESDESLRSVLSEIRLNLRTGESTRRPIISGEQVNLEAGMVNRNLLGRKTR 481 (590)
T ss_pred ccccCCCCeEEEEEecccChhh-hcc----cccccccceEEEEEEECCCCceeeeEeecCCCcccccceECHHHCCCccc
Confidence 99974 3679999999876431 111 11123567899999999999998887755 799999999999999999
Q ss_pred EEEeeccCCCCCCCeEEEEecccCCCCCceeeeecCceeeEEEcCCCCcCcceEEeeCCCCCCCCCCCcEEEEEEEeCCC
Q 013529 315 YVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENT 394 (441)
Q Consensus 315 y~Y~~~~~~~~~~~~l~k~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~EdDG~ll~~v~d~~~ 394 (441)
|+|+++.++++.+++|+|+|+++ |+. +.|++|+++|+|||+||||+++ +.+|||||||++|+|.++
T Consensus 482 y~Y~~~~~~~~~~~givK~Dl~t----g~~---------~~~~~g~g~~~gEPvFVPr~~~-~~~EDDGylls~V~d~~~ 547 (590)
T PLN02258 482 YAYLAIAEPWPKVSGFAKVDLST----GEV---------KKYIYGEGRYGGEPFFVPRGSG-SEAEDDGYILAFVHDEEK 547 (590)
T ss_pred eEEEeccCCCCCCCeEEEEECCC----CcE---------EEEECCCCccccCCEeccCCCC-CcccCCcEEEEEEEECCC
Confidence 99999887777899999999996 553 4799999999999999999965 235999999999999999
Q ss_pred CeeEEEEEeCCCCCCCceEEEEcCCcCCCCCCccccChhhHHHh
Q 013529 395 GKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEEL 438 (441)
Q Consensus 395 ~~s~L~VlDA~~l~~gpvAr~~Lp~~vP~gfHG~w~~~~~~~~~ 438 (441)
++|+|+||||++|+ +|||++||++||+||||+|++.+||++|
T Consensus 548 ~~SeL~IlDA~~l~--~VArv~LP~rVP~GFHG~wv~~~~l~~q 589 (590)
T PLN02258 548 GKSELQVVNAVNLE--LEATVKLPSRVPYGFHGTFISAEDLLKQ 589 (590)
T ss_pred CceEEEEEeCCCCc--ccEEEECCCCCCCcccccccCHHHHhhc
Confidence 99999999999998 7999999999999999999999999877
No 3
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.8e-103 Score=774.96 Aligned_cols=401 Identities=38% Similarity=0.636 Sum_probs=349.7
Q ss_pred CeeEEEEeCC-cEEEEeeeecChhhHhhhhcCCceeeccCCCCCchhhHHHHHHHhhhhhcccccCCCCCcceeEeEEEC
Q 013529 1 MLHGLRIKDG-KAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHH 79 (441)
Q Consensus 1 mv~~~~f~~G-~v~y~~Rfv~T~~~~~e~~ag~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~V~~~~ 79 (441)
|||+|.|.|| +|+|+||||||++|.+|++||+++|+++++..++.. +.- +. + ...+|.|||||+.|+
T Consensus 77 MI~~v~f~~gg~a~yrnrfVrT~g~~ae~~Ag~~l~~g~~~~~p~~~---------~~~-~~-~-~~lkn~aNTsVi~~~ 144 (490)
T COG3670 77 MIHAVAFRDGGRATYRNRFVRTQGYLAENEAGKPLWGGLGETQPPGV---------RPH-SR-T-GDLKNAANTSVIMHG 144 (490)
T ss_pred eEEEEEecCCCceEEEEEEEeeceeehhhhcCcceeccccccCCCCc---------CcC-cc-c-cccccCCccceEeeh
Confidence 9999999995 999999999999999999999999999887433210 000 00 0 013799999999999
Q ss_pred CEEEEEecCCCCEEEecCCCCCccccccccCCC-CCCCCCCCCceecCCCCcEEEEEeeCCCCeEEEEEECCCCCeeeeE
Q 013529 80 GKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDK-RLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPV 158 (441)
Q Consensus 80 g~LlAl~E~g~P~~ld~~~~~tLeT~g~~~~~~-~l~~~~tAHp~~Dp~tg~~~~~g~~~~~~~~~~~~~~~~g~~~~~~ 158 (441)
++|+||||+|.||+||| .||+|+|..+|+| .+..+||||||+||.|||++||||+...+|++|+++|.+|++++.+
T Consensus 145 ~~LlalwEgG~pyrLdp---~tL~TlG~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~~~l~~~~v~~~G~l~r~~ 221 (490)
T COG3670 145 DELLALWEGGSPYRLDP---DTLETLGKEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFALPYLTYYVVDADGELRRTV 221 (490)
T ss_pred hHHHHHHhcCCccccCh---hHhhhcChhhcCCCCCCCccccCccCCCCCceEEEEEeccCCCeeEEEEECCCCcEEEee
Confidence 99999999999999999 5999999999999 4557899999999999999999999887899999999999999999
Q ss_pred EEeeCCccceeeeeecCCEEEEEeCCccccHHHHHHc---CCeeeEEcCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEc
Q 013529 159 PITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKE---NKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFH 235 (441)
Q Consensus 159 ~~~~~~~~~~Hdf~iTeny~V~~~~P~~~~~~~~l~~---~~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~fH 235 (441)
.+++|++.|||||++|+||+||+++|+.+|+...+++ ...++.|+|+.||||+||||.+ + +++||||+||+|+||
T Consensus 222 ~i~lpg~~~~HDFa~T~~y~If~~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g-~-~~irwfE~~p~fvfH 299 (490)
T COG3670 222 DIPLPGPPMMHDFAITENYLIFFDLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREG-D-SEIRWFEAEPGFVFH 299 (490)
T ss_pred eeecCCCccceeeeecCceEEEEeCcccccchhHHhcCcccccceeecCCCCcEEEEEccCC-C-CceeEEecCCeEEEE
Confidence 9999999999999999999999999999996433333 3568999999999999999996 3 689999999999999
Q ss_pred cccceecCCCeEEEEEEeccCCCCcccC-Cccccc--cccCcccEEEEEEeCCCCCeeEEecCCCCCcCCccCCCCCCCC
Q 013529 236 NANAWEEEEDEVVLITCRVRNPDLDMFN-GPLKET--LEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRK 312 (441)
Q Consensus 236 ~~NAyE~~~g~ivvd~~~~~~~~~~~~~-~~~~~~--~~~~~~~l~R~~idl~~g~~~~~~l~~~~~EfP~in~~~~G~~ 312 (441)
++||||++|+.|.+|.+++++.....-. +...+. ....+++|+||+|||+||++..+.+.++++|||+||+++.|++
T Consensus 300 ~~NAye~~d~~v~~d~~~~~~~~~~~~~~~~~~~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~~r~~EFP~in~~~~G~p 379 (490)
T COG3670 300 FLNAYEEGDEVVLVDFLRYDDFSQTLDTLGEGPGGDFRTLAPPRLHRWTLNLKTGKVAEEQLDDRACEFPRINPRYVGQP 379 (490)
T ss_pred ecceeecCCCcEEEEEEeecccccccccccccccccccccCCCcceEEEEccccchhHHHhhhhhhcccCccChhhcCCc
Confidence 9999999878999999999876321110 111110 1123789999999999999998999999999999999999999
Q ss_pred CcEEEeeccCC-CCCCCe---EEEEecccCCCCCceeeeecCceeeEEEcCCCCcCcceEEeeCCCCCCCCCCCcEEEEE
Q 013529 313 QRYVYGSILEN-IAKVTG---MIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFH 388 (441)
Q Consensus 313 ~ry~Y~~~~~~-~~~~~~---l~k~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~EdDG~ll~~ 388 (441)
|||+|++...+ ...+++ |+|+|++| |+. +.|.+++++|+|||+|||||++ ++|||||||++
T Consensus 380 ~RY~Y~~~~rp~~~l~~g~~~l~k~D~~t----g~~---------~~~~~g~~~y~~E~vfvPrpg~--~~EdDGwLl~~ 444 (490)
T COG3670 380 YRYTYMSGARPGTFLFQGLQTLAKHDLET----GTS---------QVYSFGPRGYGSEPVFVPRPGS--SAEDDGWLLTL 444 (490)
T ss_pred eEEEEEecccCCccchhhcceeEEEeccC----CcE---------EEEecCCCCcccccccccCCCC--CcCCCcEEEEE
Confidence 99999997664 345555 99999996 553 5799999999999999999965 89999999999
Q ss_pred EEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCCCCCccccChh
Q 013529 389 VHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEE 433 (441)
Q Consensus 389 v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp~~vP~gfHG~w~~~~ 433 (441)
|+|.+.++|+|+||||+++++|||||+.||++||+||||+|++.+
T Consensus 445 vyd~~~~~Sel~v~DA~~~~~epIa~l~Lp~~vP~gfHG~w~~~~ 489 (490)
T COG3670 445 VYDGDRHASELLVFDAQRVTAEPIARLALPQRVPYGFHGNWVPTE 489 (490)
T ss_pred EEecCCCcceEEEEecccCCCCcceEEeccccccccccccccccc
Confidence 999999999999999999999999999999999999999999875
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=1.1e-97 Score=781.41 Aligned_cols=408 Identities=39% Similarity=0.664 Sum_probs=306.5
Q ss_pred CeeEEEEeCCcEEEEeeeecChhhHhhhhcCCceeec-cCCCCCchhhHHHHHHHhhhhhcccccCCCCCcceeEeEEEC
Q 013529 1 MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTK-IGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHH 79 (441)
Q Consensus 1 mv~~~~f~~G~v~y~~Rfv~T~~~~~e~~ag~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~V~~~~ 79 (441)
|||+|+|++|+|+|+||||||+.|++|+++||.+|.+ ||+... .+.++..+ .+.... .....+|+|||||++|+
T Consensus 56 mv~~~~f~~g~v~y~~R~v~T~~~~~e~~~g~~~~~g~~gt~~~-~~~~~~~~-~~~~~~---~~~~~~~~aNt~v~~~~ 130 (486)
T PF03055_consen 56 MVHAFRFDDGRVTYRNRFVRTEGYKAEREAGRRLYRGEFGTVPL-PDPCRNIF-RFPMPF---FRGKPKNNANTNVIPHG 130 (486)
T ss_dssp EEEEEEEETTEEEEEEEE---HHHHHHHHHTSS-SC-TTTCTTC-STHHHHTC-HHTTS-----GGGB-----SEEEEET
T ss_pred EEEEEEECCCCceeEEEEeCcHHHHHHHhcCCceeccccccccc-Cchhhhhh-hhcccc---ccccCCCCceeeeEEEC
Confidence 8999999999999999999999999999999999976 887641 12222111 000000 01123799999999999
Q ss_pred CEEEEEecCCCCEEEecCCCCCccccccccCCCCCC-CCCCCCceecCCCCcEEEEEeeCC---CCeEEEEEECCCCCee
Q 013529 80 GKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLN-HPFTAHPKIDPYTDEMFTFGYTQT---PPYVTYRVISKDGFMH 155 (441)
Q Consensus 80 g~LlAl~E~g~P~~ld~~~~~tLeT~g~~~~~~~l~-~~~tAHp~~Dp~tg~~~~~g~~~~---~~~~~~~~~~~~g~~~ 155 (441)
||||||||+|.||++|| .||||+|..+|++.+. ..||||||+||+||++|+||++.+ .++++++++|++|+++
T Consensus 131 g~llAl~E~g~p~~lDp---~TLeT~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g~~~ 207 (486)
T PF03055_consen 131 GRLLALWEGGPPYELDP---DTLETLGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDGKKI 207 (486)
T ss_dssp TEEEEE-TTSEEEEEET---TTCEEEEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTSEEE
T ss_pred CEEEEEEcCCCCEEech---hHhhhcCcccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCcccee
Confidence 99999999999999999 6999999999999998 689999999999999999999854 3789999999999877
Q ss_pred eeEEE-eeCCccceeeeeecCCEEEEEeCCccccHHHHHHcCC--eeeEEcCCCCcEEEEEeCcCCCCCceEEEEcCCee
Q 013529 156 DPVPI-TMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENK--LIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCY 232 (441)
Q Consensus 156 ~~~~~-~~~~~~~~Hdf~iTeny~V~~~~P~~~~~~~~l~~~~--~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~ 232 (441)
+.... ++|.++|||||+|||||+||+++|+.+|+.+++.+.. .++.|+|+++++|+||||++++ ..++|+++|+||
T Consensus 208 ~~~~~~~~~~~~~iHdf~vT~~Y~V~~~~P~~~~~~~~~~g~~~~~~~~~~p~~~t~~~VipR~~~~-~~v~~~~~~~~~ 286 (486)
T PF03055_consen 208 HRVPSFPLPRPSYIHDFAVTENYVVFPDNPLRFDPERLLLGGSPIDCLKWDPERPTRFHVIPRDGGK-SPVRWFEAPPFF 286 (486)
T ss_dssp EEEEESCCCS-B-----EE-SSEEEEEE-SEEE-HHHHHTTCCTGGCEEE-TTS-EEEEEEETTTSC-CCEEEEEETTCE
T ss_pred EEeeeccCCCCcccccccccCceEEEEECCeEECHHHHhhCCcccceEEECCCCCeEEEEEECcCCC-ceeEEEecCChh
Confidence 66766 8999999999999999999999999999999986442 7899999999999999999753 689999999999
Q ss_pred EEccccceecCCC--eEEEEEEeccCCCCcc-c-----CCccccccccCcccEEEEEEeCC--CCCeeEEecCCC-CCcC
Q 013529 233 IFHNANAWEEEED--EVVLITCRVRNPDLDM-F-----NGPLKETLEDQTTELYEMRFNMK--TGLASQKKLSPA-CVDF 301 (441)
Q Consensus 233 ~fH~~NAyE~~~g--~ivvd~~~~~~~~~~~-~-----~~~~~~~~~~~~~~l~R~~idl~--~g~~~~~~l~~~-~~Ef 301 (441)
+||++||||++|| +||+|+|+|++..+.. . ............++|+||+||+. +|+++.+.|++. ++||
T Consensus 287 ~~H~~NAyE~~dg~~~iv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~~~~~~Ef 366 (486)
T PF03055_consen 287 VFHFVNAYEDDDGGGEIVLDACRYDDPEFLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTGRVSEEPLDDGNPCEF 366 (486)
T ss_dssp EEEEEEEEEETTT-TEEEEEEEEECSSS-CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TCEEEEEEEETTEEEEE
T ss_pred hccccceeecCCCceEEEEEEeecCCcccccccchhcccccccccccCCCceEEEEEEccccccceeEHhHhccCCCccc
Confidence 9999999999854 9999999998865321 0 10001122357899999999999 888888889887 6999
Q ss_pred CccCCCCCCCCCcEEEeeccCC----CCCCCeEEEEecccCCCCCceeeeecCceeeEEEcCCCCcCcceEEeeCCCCCC
Q 013529 302 PRINEHYMGRKQRYVYGSILEN----IAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSST 377 (441)
Q Consensus 302 P~in~~~~G~~~ry~Y~~~~~~----~~~~~~l~k~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~ 377 (441)
|+||+++.|++|||+|+++... ..++++|+|+|++| |+. +.|.++++++++||+|||||++
T Consensus 367 P~in~~~~g~~~ry~Y~~~~~~~~~~~~~~~~l~k~D~~t----g~~---------~~~~~~~~~~~~EpvFVPr~~~-- 431 (486)
T PF03055_consen 367 PRINPRYSGRPYRYVYAVGMDPERSPGFPFNGLVKVDLET----GEV---------QRWSFGPGCFPGEPVFVPRPGG-- 431 (486)
T ss_dssp EEE-GGGTTS--SEEEEEEECSCTS---EEEEEEEEETTT----TEE---------EEEE-TTTEEE--EEEEE-TTS--
T ss_pred ceeCcccCCCcccEEEEEeecccCCcCcCCCEEEEEeccc----ccc---------eEEECCCCceecceEeccCCCC--
Confidence 9999999999999999876542 35689999999996 552 5799999999999999999965
Q ss_pred CCCCCcEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCCCCCccccCh
Q 013529 378 SEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSE 432 (441)
Q Consensus 378 ~~EdDG~ll~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp~~vP~gfHG~w~~~ 432 (441)
.+|||||||++|+|.++++|+|+||||++|++|||||++||++||+||||+|+++
T Consensus 432 ~~EdDG~Ll~~v~~~~~~~s~l~VlDA~~l~~GPvAr~~lP~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 432 AEEDDGYLLSVVYDSDTNRSELLVLDAKDLEEGPVARVELPHRVPYGFHGSWVPE 486 (486)
T ss_dssp -STT-EEEEEEEEETTTTCEEEEEEETTTTCE--EEEEEESS---S-SEEEEEE-
T ss_pred CCCCceEEEEEEEECCCCccEEEEEeCCCCCcCceEEEECCCCCCCCccccccCC
Confidence 7999999999999999999999999999999999999999999999999999864
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=2.9e-91 Score=743.33 Aligned_cols=406 Identities=25% Similarity=0.419 Sum_probs=327.0
Q ss_pred CeeEEEEeCC--cEEEEeeeecChhhHhhhhcCCceeeccCCCCCchhhHHHHHHHhhhhhcccccCCCCCcceeEeEEE
Q 013529 1 MLHGLRIKDG--KAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYH 78 (441)
Q Consensus 1 mv~~~~f~~G--~v~y~~Rfv~T~~~~~e~~ag~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~V~~~ 78 (441)
|||+|+|++| +|+|+||||||++|++|+++|+.++.. ..+++++..... ...+. ....+|+|||||++|
T Consensus 117 mlh~f~f~~G~~~v~y~nRfVrT~~~~~E~~ag~~~~~~--~~~~pfs~~~~~-----~~~~~--~~~~kn~ANT~V~~~ 187 (610)
T PLN02969 117 YLRAFHIDGGDRPVQYSARYVKTEAKKEEHDPETRTWRF--TYRGPFSVLKGG-----KRVGN--VKVMKNVANTSVLKW 187 (610)
T ss_pred eEEEEEEcCCCeEEEEEeeeeccHHHHHHHHhCCcceee--eeccchhcccCC-----CCccc--ccccccCCCcceeee
Confidence 8999999998 499999999999999999999887641 112222211000 00000 011369999999999
Q ss_pred CCEEEEEecCCCCEEEecCCCCCccccccccC-----------------------------CCCCC---CCCCCCceecC
Q 013529 79 HGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDY-----------------------------DKRLN---HPFTAHPKIDP 126 (441)
Q Consensus 79 ~g~LlAl~E~g~P~~ld~~~~~tLeT~g~~~~-----------------------------~~~l~---~~~tAHp~~Dp 126 (441)
+||||||||+|.||+||| +||||+|.+|| .|.+. .+||||||+||
T Consensus 188 gg~LlAl~E~g~P~~lDP---~TLeT~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP 264 (610)
T PLN02969 188 GGRLLCLWEGGEPYEIDS---GTLETIGRFDLAPDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMPKKRLLSHYKIDG 264 (610)
T ss_pred CCEEEEecCCCCCeEcCc---CccceeecccccccccccccccccccccccccccccccccccccccCCccccccCCcCC
Confidence 999999999999999999 69999999998 33332 46899999999
Q ss_pred CCCcEEEEEeeCC-----CCeEEEEEECCCCCeeeeEEEeeCCccceeeeeecCCEEEEEeCCccccHHHHHH--cCC--
Q 013529 127 YTDEMFTFGYTQT-----PPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVK--ENK-- 197 (441)
Q Consensus 127 ~tg~~~~~g~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Hdf~iTeny~V~~~~P~~~~~~~~l~--~~~-- 197 (441)
.||++++|+++.. .+.+++|++|++|++.++.++++|.++|||||++||||+||+++|+.+|+.++|. .|.
T Consensus 265 ~tg~lv~f~~~~~~~~~~~~~~~~y~~d~~G~~~~~~~~~~p~~~~iHDfaiTeny~Vf~~~P~~~d~~~~l~~~~G~~~ 344 (610)
T PLN02969 265 RRNRLLVVTCNAEDMLLPRSNFTFYEFDADFKLVQRKEFKLDDHLMIHDWAFTDTHYVLLANRVKLDVPGSLLAMAGLSP 344 (610)
T ss_pred CCCCEEEEEeccccccCCCceeEEEEECCCCCEecceeecCCCcceeeeeeccCCEEEEEECceecCHHHHHHHhhcCCC
Confidence 9999999998652 3689999999999999999999999999999999999999999999999987553 222
Q ss_pred --eeeEEcCCCCc-EEEEEeCcCCCC-CceEE---EEcC-CeeEEccccceecC--CC--eEEEEEEe--ccCCCCc-c-
Q 013529 198 --LIYAFDPTIKA-RFGVLPRYARDD-LQIRW---FELP-NCYIFHNANAWEEE--ED--EVVLITCR--VRNPDLD-M- 261 (441)
Q Consensus 198 --~~~~~~~~~~t-~~~vipR~~~~~-~~v~~---~~~~-~~~~fH~~NAyE~~--~g--~ivvd~~~--~~~~~~~-~- 261 (441)
.+|.|+|++++ +|+||||++++. ..++| +++| +||+||++||||++ +| +||+|+|. |++..+. .
T Consensus 345 ~~~~l~wdp~~~t~~~~VipR~~~~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~~~~~~~~~~~~~~ 424 (610)
T PLN02969 345 MISALAVDPSRPSSPVYLLPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHASACSYQWFSFHRMF 424 (610)
T ss_pred chheeEECCCCCccEEEEEECcCCCcccceeeeeEEeeCCCeEEEeccceeecCCCCCceEEEEEEeccccccccccccc
Confidence 46999999995 899999997532 57899 9998 59999999999963 24 59999875 5443321 0
Q ss_pred ----cCCcccc---c---cccCcccEEEEEEeCC-CCCe---eEEecC---CCCCcCCccCCCCCCCCCcEEEeeccCC-
Q 013529 262 ----FNGPLKE---T---LEDQTTELYEMRFNMK-TGLA---SQKKLS---PACVDFPRINEHYMGRKQRYVYGSILEN- 323 (441)
Q Consensus 262 ----~~~~~~~---~---~~~~~~~l~R~~idl~-~g~~---~~~~l~---~~~~EfP~in~~~~G~~~ry~Y~~~~~~- 323 (441)
....... . .....++|+||+||+. +|++ +.+.|. +.++|||+||+++.||+|||+|+++.++
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~idl~~~g~~~~~~~~~l~~~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~ 504 (610)
T PLN02969 425 GYDWQNKKLDPSVMNNAKGKELLPHLVQVSIDLDRTGDCRSCDVEPLSNQWEKPADFPVINPSFSGQKNEYTYAAAASGS 504 (610)
T ss_pred cccccccccCcchhcccCcccccceEEEEEEeCCcCCccccccceeeccccccccccCccChhHCCCcceEEEEeeecCC
Confidence 0000000 0 0123578999999996 6765 346775 6799999999999999999999987642
Q ss_pred -----CCCCCeEEEEecccCCCCCceeeeecCceeeEEEcCCCCcCcceEEeeCCC--CCCCCCCCcEEEEEEEeCCCCe
Q 013529 324 -----IAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREP--SSTSEEDDGYLIFHVHDENTGK 396 (441)
Q Consensus 324 -----~~~~~~l~k~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~--~~~~~EdDG~ll~~v~d~~~~~ 396 (441)
...+++|+|+|+++ |+. +.|++++++++||||||||++ + +++|||||||++|+|..+++
T Consensus 505 ~~~~~~~~~~~l~K~D~~t----g~~---------~~w~~g~~~~~~EPvFVPr~~~p~-~~~EDDG~Ll~~v~d~~~~~ 570 (610)
T PLN02969 505 RKTLPHFPFDSVVKLDVPD----GSA---------RSWSTGARRFVGEPVFVPRKSSQG-GGEEDDGYVLVVEYAVSDER 570 (610)
T ss_pred CcccccCCcCeEEEEECCC----CCE---------EEEEeCCCCcccCCEEecCCCCCC-CCccCCcEEEEEEEECCCCc
Confidence 23689999999996 553 579999999999999999952 2 37899999999999999999
Q ss_pred eEEEEEeCCCCCCC--ceEEEEcCCcC--CCCCCccccCh
Q 013529 397 SAVYVIDAKTMSAD--PVAVIELPHRV--PYGFHGIFLSE 432 (441)
Q Consensus 397 s~L~VlDA~~l~~g--pvAr~~Lp~~v--P~gfHG~w~~~ 432 (441)
|+|+||||++|++| ||||++||++| |+||||+|++.
T Consensus 571 S~LvILDAk~~~eg~~PVAri~LP~~v~~P~GfHG~w~~~ 610 (610)
T PLN02969 571 CYLVILDAKRIGERDAVVAKLEVPKHLTFPMGFHGFWADE 610 (610)
T ss_pred eEEEEEeCCCCcccCceeEEEECCcccCCCccccccccCC
Confidence 99999999999986 99999999998 99999999863
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-56 Score=464.54 Aligned_cols=411 Identities=30% Similarity=0.437 Sum_probs=312.1
Q ss_pred CeeEEEEeCCcEEEEeeeecChhhHhhhhcCCceeeccCCCCCchhhHHHHHHHhhhhhcccccCCCCCcceeEeEEE-C
Q 013529 1 MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYH-H 79 (441)
Q Consensus 1 mv~~~~f~~G~v~y~~Rfv~T~~~~~e~~ag~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~V~~~-~ 79 (441)
++|+++|.||+++|++||++|+.|+......+.+.++|++.++....+...++++-+.+.. ....+|+||+++.+. |
T Consensus 75 ~~~~~~~~dg~~~~~~~~~~s~~y~~~~~p~r~v~~~f~~~~~~pd~~~~~~s~~~~~~~~--g~~~rd~aN~~f~pv~g 152 (582)
T KOG1285|consen 75 LLHAFHFLDGRVYYSSRYLESDPYKKTVDPNRIVSGEFAPVAEFPDPCKNIFSGFFPEFRN--GESIRDNANPNFTPVGG 152 (582)
T ss_pred hhhheeecCCeEEEEeeecccCCcccccccceeeeccccccCCCCCccCcceeeeeeeccc--ccccccCCCcceeecCC
Confidence 5799999999999999999999999999999999999998764333332223322222211 122479999999999 9
Q ss_pred CEEEEEecCCCCEEEecCCCCCccccccccCCC-CCC-CCCCCCceecCCCCcEEE-EEee-CCCC----eEEEEEECCC
Q 013529 80 GKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDK-RLN-HPFTAHPKIDPYTDEMFT-FGYT-QTPP----YVTYRVISKD 151 (441)
Q Consensus 80 g~LlAl~E~g~P~~ld~~~~~tLeT~g~~~~~~-~l~-~~~tAHp~~Dp~tg~~~~-~g~~-~~~~----~~~~~~~~~~ 151 (441)
++|||.+|.-.-+++|+ +||+|+..++|.+ .+. ..++|||+.|+. |++++ +|.. ++.. +..+... ..
T Consensus 153 ~~~~~gtet~~~~ki~~---~tl~t~~~~~~~k~~v~~~~~gah~~~d~~-G~~~g~~g~~~~~~~~~r~~~~~~~p-~~ 227 (582)
T KOG1285|consen 153 HHLYAGTETPHAVKIDP---GTLETTYKVRFTKTLVQEHTAGAHPHPDEI-GTVYGHFGIARFGLFFARALTVLKNP-AN 227 (582)
T ss_pred CeeEecCCCceeEEecC---cccceeEeeccccceeeeeecccCCcccCc-ccEEeeechhhccccccceeEEEecC-CC
Confidence 99999999987788888 6999999999998 444 568899999985 99999 6654 3322 2222221 11
Q ss_pred CCe---e-----eeEE-E----eeCCccceeeeeecCCEEEEEeCCccccHHHHHHcC---------CeeeEEcCCCCcE
Q 013529 152 GFM---H-----DPVP-I----TMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKEN---------KLIYAFDPTIKAR 209 (441)
Q Consensus 152 g~~---~-----~~~~-~----~~~~~~~~Hdf~iTeny~V~~~~P~~~~~~~~l~~~---------~~~~~~~~~~~t~ 209 (441)
|.- . .... . ..+.|.|+|+|++||||+|++++|+++++.+++... ..+++|.|+....
T Consensus 228 ~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~ 307 (582)
T KOG1285|consen 228 GVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLI 307 (582)
T ss_pred ccccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCCcccchhhhccCcccccccchhhhhhcccCCCcEE
Confidence 110 0 0011 1 456899999999999999999999999998876432 2357899999999
Q ss_pred EEEEeCcCCCCCceEEEEcCCeeEEccccceecCCCeEEEEEEeccCCCC---cc---c--CCc--c-------------
Q 013529 210 FGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDL---DM---F--NGP--L------------- 266 (441)
Q Consensus 210 ~~vipR~~~~~~~v~~~~~~~~~~fH~~NAyE~~~g~ivvd~~~~~~~~~---~~---~--~~~--~------------- 266 (441)
++++++++....++.. .+++++|||.||||++ +.||+|.|++.+... +. + +.. -
T Consensus 308 ~~~~~~~~~k~~~~~~--~~~~~t~hh~na~eed-g~vi~D~~~~~~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d~~~ 384 (582)
T KOG1285|consen 308 YHKFSKEGGKSVPVEI--FPSFPTFHHDNAFEED-GCVVPDLCVYFDLSEMIRDTSPLLYDNGKTLRFGLLSKTAPDARR 384 (582)
T ss_pred EEEeccccCccCccee--ccCcceEEEeeeeccc-CceEEEEEEEechhhhhcccceeecccccccccccccccCCcccc
Confidence 9999999854333432 3358999999999999 999999999876430 00 0 000 0
Q ss_pred -----------------ccc------------------------cccCcccEEEEEEeCCCCCeeEEecCC-CCCcCCcc
Q 013529 267 -----------------KET------------------------LEDQTTELYEMRFNMKTGLASQKKLSP-ACVDFPRI 304 (441)
Q Consensus 267 -----------------~~~------------------------~~~~~~~l~R~~idl~~g~~~~~~l~~-~~~EfP~i 304 (441)
++. .+....+|...++++.+|...++.+.. .++|+++|
T Consensus 385 ~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~~i~~~~de~~~~~l~e~r~~~~tg~~~~~~~~~~~nl~~~~i 464 (582)
T KOG1285|consen 385 IVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTSTIFRESDELLGNRLEEIRLNLKTGLEFPRPVIPKINLDFGMI 464 (582)
T ss_pred eEEEeccccccccchhhhcccCCCceEEeecccCCccchhhcccccchhceeeeeeecccccccccceeecccccccccc
Confidence 000 001123444555555555444333333 48899999
Q ss_pred CCCCCCCCCcEEEeeccCCCCCCCeEEEEecccCCCCCceeeeecCceeeEEEcCCCCcCcceEEeeCCCCCCCCCCCcE
Q 013529 305 NEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGY 384 (441)
Q Consensus 305 n~~~~G~~~ry~Y~~~~~~~~~~~~l~k~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~EdDG~ 384 (441)
|..+.||+|||+|+++.++++.+++++|+|+.+ |+. ..|..+.+++.|||+|||+|+ +.+|||||
T Consensus 465 n~~~~Gkk~ryvY~ai~~~~p~~~g~vKvDl~~----g~~---------~~w~~~~~~~~GEP~FVP~p~--~~eEDdG~ 529 (582)
T KOG1285|consen 465 NRSYLGKKYRYVYGAILDPWPKVSGIVKVDLVT----GEV---------KKWREGGGRPGGEPIFVPRPG--TLEEDDGY 529 (582)
T ss_pred cceeecccceEEEEEecCCccCCCeEEEEEecC----Cce---------eeEecCCCccCCCceEecCCC--CcccCCcE
Confidence 999999999999999998888999999999996 452 368888888888999999995 48999999
Q ss_pred EEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCCCCCccccChhhHHHh
Q 013529 385 LIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEEL 438 (441)
Q Consensus 385 ll~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp~~vP~gfHG~w~~~~~~~~~ 438 (441)
||++|++..+.+|+|+||||++|+ ++||+++|.++|+||||.|+++.++..|
T Consensus 530 Iv~~v~~~~~~~s~l~ildAK~l~--~~ar~~vp~rvP~gfHG~f~~~~~~~~~ 581 (582)
T KOG1285|consen 530 IVSVVHDESKEKSFLLILDAKTLE--EVARVEVPTRVPYGFHGTFVSTTDLATQ 581 (582)
T ss_pred EEEEEEcCCCCcccEEEEeccccc--eeeEEecCCCCCCccceeEecccccccc
Confidence 999999999999999999999987 8999999999999999999999998765
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=1.2e-20 Score=197.34 Aligned_cols=251 Identities=34% Similarity=0.512 Sum_probs=202.6
Q ss_pred CeeEEEEeCC--cEEEEeeeecChhhHhhhhcCCc-eeeccCCCCCchhhHHHHHHHhhhhhcccccCCCCCcceeEeEE
Q 013529 1 MLHGLRIKDG--KAAYVSRYVKTSRLKQEEFFGGA-KFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIY 77 (441)
Q Consensus 1 mv~~~~f~~G--~v~y~~Rfv~T~~~~~e~~ag~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~V~~ 77 (441)
|+|+++|+.| +++|+.||.+| |.+|..+|+. .+...|+..+.+|..+......|............+.+|+..++
T Consensus 161 t~~~~ki~~~tl~t~~~~~~~k~--~v~~~~~gah~~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~ 238 (582)
T KOG1285|consen 161 TPHAVKIDPGTLETTYKVRFTKT--LVQEHTAGAHPHPDEIGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVW 238 (582)
T ss_pred CceeEEecCcccceeEeeccccc--eeeeeecccCCcccCcccEEeeechhhccccccceeEEEecCCCccccccccceE
Confidence 7899999999 89999999999 9999999954 45668887664444333333233332333333345679999999
Q ss_pred ECCEEEEEecCCCCEEEecCCCCCccc-cccccCCCCCCCCCCCCceecCCCCcEEEEEeeCC-CCeEEEEEECCCCCee
Q 013529 78 HHGKLLVLSEIDKPYVLKVLKDGDLQT-LGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQT-PPYVTYRVISKDGFMH 155 (441)
Q Consensus 78 ~~g~LlAl~E~g~P~~ld~~~~~tLeT-~g~~~~~~~l~~~~tAHp~~Dp~tg~~~~~g~~~~-~~~~~~~~~~~~g~~~ 155 (441)
..++++|+.|.+.||..-...-+.+|| ++..+++.++.....|||++||.+|+++...|+.. .+++.|..++..|...
T Consensus 239 ~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~ 318 (582)
T KOG1285|consen 239 FHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKS 318 (582)
T ss_pred eecceeeeccCCCccceEEeecCCccceEeEecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCcc
Confidence 999999999999887555443367999 99999999998888999999999999999999865 4789999999998877
Q ss_pred eeEEEeeCCccceeeeeecCCEEEEEeCCccccHHHHHHcCCeeeEEcCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEc
Q 013529 156 DPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFH 235 (441)
Q Consensus 156 ~~~~~~~~~~~~~Hdf~iTeny~V~~~~P~~~~~~~~l~~~~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~fH 235 (441)
....+....+.++||||+|||+.|+++.++..++..|...+. ++..+..+..|+.+.++...+...++|...+.+++||
T Consensus 319 ~~~~~~~~~~t~hh~na~eedg~vi~D~~~~~~~~~~~~~~~-p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~ 397 (582)
T KOG1285|consen 319 VPVEIFPSFPTFHHDNAFEEDGCVVPDLCVYFDLSEMIRDTS-PLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFH 397 (582)
T ss_pred CcceeccCcceEEEeeeecccCceEEEEEEEechhhhhcccc-eeecccccccccccccccCCcccceEEEecccccccc
Confidence 666665558899999999999999999999999987776555 6888999999999999998888899999999999999
Q ss_pred cccceecC--CCeEEEEEEec
Q 013529 236 NANAWEEE--EDEVVLITCRV 254 (441)
Q Consensus 236 ~~NAyE~~--~g~ivvd~~~~ 254 (441)
..|+||+. +-+++|...+.
T Consensus 398 ~~~~~e~~~~~~~~~v~~~~~ 418 (582)
T KOG1285|consen 398 LWNNWEKKPYDWEVVVIGSCM 418 (582)
T ss_pred chhhhcccCCCceEEeecccC
Confidence 99999963 22455544333
No 8
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=45.34 E-value=17 Score=34.19 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=31.5
Q ss_pred eEEECCEEEEE-ecCCCCEEEecCCCCCccccccccCCCC
Q 013529 75 LIYHHGKLLVL-SEIDKPYVLKVLKDGDLQTLGMLDYDKR 113 (441)
Q Consensus 75 V~~~~g~LlAl-~E~g~P~~ld~~~~~tLeT~g~~~~~~~ 113 (441)
+..+++.+|+| |--|..|..|+ .||+++|+..|.|+
T Consensus 96 it~~gd~~y~LTw~egvaf~~d~---~t~~~lg~~~y~Ge 132 (262)
T COG3823 96 ITKLGDYFYQLTWKEGVAFKYDA---DTLEELGRFSYEGE 132 (262)
T ss_pred eeeccceEEEEEeccceeEEECh---HHhhhhcccccCCc
Confidence 66789999999 77788899998 59999999999876
No 9
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=41.77 E-value=1.3e+02 Score=30.56 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=43.8
Q ss_pred CCCcEEEeeccCCCCCCCeEEEEecccCCCCCceeeeecCceeeEEEcCCCCcCcceEEeeCCCCCCCCCCCcEEEEEEE
Q 013529 311 RKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVH 390 (441)
Q Consensus 311 ~~~ry~Y~~~~~~~~~~~~l~k~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~EdDG~ll~~v~ 390 (441)
..-||+|.+..+ ..|.++|+.+. +.. .....| .+|.=|-= ..|.-||++..+
T Consensus 46 ~Dgr~~yv~~rd-----g~vsviD~~~~----~~v--------~~i~~G-----~~~~~i~~------s~DG~~~~v~n~ 97 (369)
T PF02239_consen 46 PDGRYLYVANRD-----GTVSVIDLATG----KVV--------ATIKVG-----GNPRGIAV------SPDGKYVYVANY 97 (369)
T ss_dssp T-SSEEEEEETT-----SEEEEEETTSS----SEE--------EEEE-S-----SEEEEEEE--------TTTEEEEEEE
T ss_pred CCCCEEEEEcCC-----CeEEEEECCcc----cEE--------EEEecC-----CCcceEEE------cCCCCEEEEEec
Confidence 346899987643 47999999963 321 122222 23433322 124558887777
Q ss_pred eCCCCeeEEEEEeCCCCCCCceEEEEcC
Q 013529 391 DENTGKSAVYVIDAKTMSADPVAVIELP 418 (441)
Q Consensus 391 d~~~~~s~L~VlDA~~l~~gpvAr~~Lp 418 (441)
.. ..+.|+|+++++ +|.++...
T Consensus 98 ~~----~~v~v~D~~tle--~v~~I~~~ 119 (369)
T PF02239_consen 98 EP----GTVSVIDAETLE--PVKTIPTG 119 (369)
T ss_dssp ET----TEEEEEETTT----EEEEEE--
T ss_pred CC----CceeEecccccc--ceeecccc
Confidence 54 489999999987 89988765
No 10
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=37.98 E-value=2.3e+02 Score=28.23 Aligned_cols=98 Identities=17% Similarity=0.228 Sum_probs=59.0
Q ss_pred ECCEEEEEecCC----C--CEEEecCCCCCccccccccCCCCCCCCCCCCceecCCCCcEEEEEeeCCCCeEEEEEECCC
Q 013529 78 HHGKLLVLSEID----K--PYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKD 151 (441)
Q Consensus 78 ~~g~LlAl~E~g----~--P~~ld~~~~~tLeT~g~~~~~~~l~~~~tAHp~~Dp~tg~~~~~g~~~~~~~~~~~~~~~~ 151 (441)
-+..||+..|.+ . -|.++.+. .+|+-++...-.| .-..|-.+||+...++.-.| ....+.++.++.+
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~~~~~~~~g----~~p~~i~~~~~g~~l~vany--~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTLLNSVPSGG----SSPCHIAVDPDGRFLYVANY--GGGSVSVFPLDDD 119 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTT-TEEEEEEEEEESS----SCEEEEEECTTSSEEEEEET--TTTEEEEEEECTT
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCc-ceeEEeeeeccCC----CCcEEEEEecCCCEEEEEEc--cCCeEEEEEccCC
Confidence 568899999963 2 33444321 3566666654332 23467788987444444334 3456788888888
Q ss_pred CCeeeeEE-Ee----eC-----CccceeeeeecCC--EEEEEe
Q 013529 152 GFMHDPVP-IT----MS-----APIMMHDFAITEN--YAIFLD 182 (441)
Q Consensus 152 g~~~~~~~-~~----~~-----~~~~~Hdf~iTen--y~V~~~ 182 (441)
|.+..... +. -| ..+..|...++++ |+++++
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 98765432 21 11 3467899988854 776664
No 11
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=32.97 E-value=45 Score=22.57 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=20.4
Q ss_pred eEEeeCCCCCCCCCCCcEEEEEEEeCCCCeeEEEEEe
Q 013529 367 AVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVID 403 (441)
Q Consensus 367 PvFVPrp~~~~~~EdDG~ll~~v~d~~~~~s~L~VlD 403 (441)
-|+||.+ .+||+++-+.....+.-.+-..|
T Consensus 3 ~vWvpD~-------~egfv~g~I~~~~g~~vtV~~~~ 32 (42)
T PF02736_consen 3 WVWVPDP-------KEGFVKGEIIEEEGDKVTVKTED 32 (42)
T ss_dssp EEEEEES-------SSSEEEEEEEEEESSEEEEEETT
T ss_pred EEEEeCC-------cccEEEEEEEEEcCCEEEEEECC
Confidence 3788886 46999999987655554444434
No 12
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=31.61 E-value=54 Score=29.78 Aligned_cols=50 Identities=20% Similarity=0.174 Sum_probs=37.8
Q ss_pred EEEcCCCCcCcceEEeeCCCCCCCCCCCcEEEEEEEeCCCCeeEEEEEeCCCCCC
Q 013529 355 IFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSA 409 (441)
Q Consensus 355 ~~~~~~~~~~~EPvFVPrp~~~~~~EdDG~ll~~v~d~~~~~s~L~VlDA~~l~~ 409 (441)
.+..+-|+..++|.+-+.. +=+++-+.+.+.+.+..++.|+++|+.+|+.
T Consensus 38 ~~~~~~G~~~~~~~~~~~~-----~lg~~gi~~~~v~~~g~~~~lv~~DsNNm~~ 87 (179)
T PF09843_consen 38 EYPLEVGYAEAEPFLGEHE-----GLGIGGISALVVEVGGQRSALVLADSNNMEP 87 (179)
T ss_pred ccccccceEeccCCCCCCC-----CcCccccEEEEEEeCCcEEEEEEEECCCCCH
Confidence 3556667777777744442 3467888888989888999999999999974
No 13
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=31.58 E-value=1.4e+02 Score=19.18 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=19.9
Q ss_pred CeeEEEEEeCCCCCCCceEEEEcCCcCCCCC
Q 013529 395 GKSAVYVIDAKTMSADPVAVIELPHRVPYGF 425 (441)
Q Consensus 395 ~~s~L~VlDA~~l~~gpvAr~~Lp~~vP~gf 425 (441)
....+.++|+.+.. .+.++.+. .-|.++
T Consensus 12 ~~~~v~~id~~~~~--~~~~i~vg-~~P~~i 39 (42)
T TIGR02276 12 GSNTVSVIDTATNK--VIATIPVG-GYPFGV 39 (42)
T ss_pred CCCEEEEEECCCCe--EEEEEECC-CCCceE
Confidence 34588889998765 88888884 555543
No 14
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=27.86 E-value=62 Score=21.15 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=18.9
Q ss_pred cceeEeEEECCEEEEEecCCCCEEEec
Q 013529 70 AGNTALIYHHGKLLVLSEIDKPYVLKV 96 (441)
Q Consensus 70 ~aNt~V~~~~g~LlAl~E~g~P~~ld~ 96 (441)
..+.++...+|+||+..+.|.-|.+|+
T Consensus 12 ~~~~~~~v~~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 12 PIWSSPAVAGGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp ---S--EECTSEEEEE-TTSEEEEEET
T ss_pred CcCcCCEEECCEEEEEcCCCEEEEEeC
Confidence 344566788999999999999999987
No 15
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=23.69 E-value=1.3e+02 Score=30.73 Aligned_cols=87 Identities=26% Similarity=0.328 Sum_probs=42.1
Q ss_pred cCCccCCCCCCCCCcEEEeecc-CCCCCCCeEEEEecccCCCCCceeeeecCceeeEEEcCCCCcCcceEEeeCCCCCCC
Q 013529 300 DFPRINEHYMGRKQRYVYGSIL-ENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTS 378 (441)
Q Consensus 300 EfP~in~~~~G~~~ry~Y~~~~-~~~~~~~~l~k~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~ 378 (441)
-|-+.+|+ -+|+|.... .+. .+.|.-+|.++. +.. .....+++.-+-.+=|=|
T Consensus 272 lFi~thP~-----s~~vwvd~~~~~~--~~~v~viD~~tl----~~~--------~~i~~~~~~~~~h~ef~~------- 325 (369)
T PF02239_consen 272 LFIKTHPD-----SRYVWVDTFLNPD--ADTVQVIDKKTL----KVV--------KTITPGPGKRVVHMEFNP------- 325 (369)
T ss_dssp --EE--TT------SEEEEE-TT-SS--HT-EEEEECCGT----EEE--------E-HHHHHT--EEEEEE-T-------
T ss_pred ceeecCCC-----CccEEeeccCCCC--CceEEEEECcCc----cee--------EEEeccCCCcEeccEECC-------
Confidence 66666663 469998732 222 578999999974 210 011122221111122222
Q ss_pred CCCCcEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCC
Q 013529 379 EEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPH 419 (441)
Q Consensus 379 ~EdDG~ll~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp~ 419 (441)
|.-+|...+.+.+. .|+|+|+++++ .++|+.++.
T Consensus 326 --dG~~v~vS~~~~~~---~i~v~D~~Tl~--~~~~i~~~t 359 (369)
T PF02239_consen 326 --DGKEVWVSVWDGNG---AIVVYDAKTLK--EKKRIPVPT 359 (369)
T ss_dssp --TSSEEEEEEE--TT---EEEEEETTTTE--EEEEEE--S
T ss_pred --CCCEEEEEEecCCC---EEEEEECCCcE--EEEEEEeeC
Confidence 22245555555432 99999999997 899999654
No 16
>PF14839 DOR: DOR family
Probab=20.01 E-value=95 Score=29.25 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=12.2
Q ss_pred CCCCCcEEEEEEEe
Q 013529 378 SEEDDGYLIFHVHD 391 (441)
Q Consensus 378 ~~EdDG~ll~~v~d 391 (441)
++|||||||+=+-+
T Consensus 3 e~edD~WilVD~~~ 16 (216)
T PF14839_consen 3 EEEDDEWILVDFID 16 (216)
T ss_pred ccccCCeEEEEecC
Confidence 68999999987777
Done!