Query 013529
Match_columns 441
No_of_seqs 135 out of 1033
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 12:17:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3npe_A 9-CIS-epoxycarotenoid d 100.0 4E-105 1E-109 838.5 43.9 416 1-439 101-528 (529)
2 2biw_A Apocarotenoid-cleaving 100.0 9E-102 3E-106 809.1 44.6 396 1-431 74-489 (490)
3 3kvc_A Retinoid isomerohydrola 100.0 2.5E-96 9E-101 775.1 34.7 403 1-432 66-533 (533)
4 1qks_A Cytochrome CD1 nitrite 24.3 5.8E+02 0.02 25.9 13.3 107 279-418 179-285 (567)
5 1fwx_A Nitrous oxide reductase 15.3 2.9E+02 0.01 28.7 7.2 30 393-425 171-200 (595)
6 4guc_A Protein BA_2500; virule 14.1 4.9E+02 0.017 20.9 7.3 48 126-181 34-88 (120)
7 3c75_H MADH, methylamine dehyd 12.6 5.8E+02 0.02 25.0 8.3 79 314-418 85-168 (426)
8 3nol_A Glutamine cyclotransfer 11.4 1.9E+02 0.0064 26.7 4.0 119 74-231 91-213 (262)
9 3mbr_X Glutamine cyclotransfer 11.1 1.9E+02 0.0066 26.3 3.9 72 74-160 69-142 (243)
10 3nol_A Glutamine cyclotransfer 10.6 3.3E+02 0.011 25.0 5.4 37 75-114 177-214 (262)
No 1
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00 E-value=4.3e-105 Score=838.54 Aligned_cols=416 Identities=39% Similarity=0.732 Sum_probs=364.9
Q ss_pred CeeEEEEeCCcE-EEEeeeecChhhHhhhhcCCceeec-cCCCCCchhhHHHHHHHhhhhhcccccCCCCCcceeEeEEE
Q 013529 1 MLHGLRIKDGKA-AYVSRYVKTSRLKQEEFFGGAKFTK-IGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYH 78 (441)
Q Consensus 1 mv~~~~f~~G~v-~y~~Rfv~T~~~~~e~~ag~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~V~~~ 78 (441)
|||+|+|+||+| +|+||||||++|++|+++||++|++ +|+..+..+..+......+..++.++....+|+|||||++|
T Consensus 101 mlh~~~f~~G~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ANtnvv~~ 180 (529)
T 3npe_A 101 MVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYF 180 (529)
T ss_dssp EEEEEEEETTEEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHHHHHHHHHTTSCCGGGCCCCCCSCEEEE
T ss_pred eEEEEEECCCccceEEEeEecCHHHHHHHHcCCcccccccccccccchhhhhhhhhhhcccccccccccCCCCeEEEEEE
Confidence 899999999999 9999999999999999999999987 77776554444444333344444344333468999999999
Q ss_pred CCEEEEEecCCCCEEEecCCCCCccccccccCCCCCCCCCCCCceecCCCCcEEEEEeeCC-CCeEEEEEECCCCCeeee
Q 013529 79 HGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQT-PPYVTYRVISKDGFMHDP 157 (441)
Q Consensus 79 ~g~LlAl~E~g~P~~ld~~~~~tLeT~g~~~~~~~l~~~~tAHp~~Dp~tg~~~~~g~~~~-~~~~~~~~~~~~g~~~~~ 157 (441)
+||||||||+|.||+++++|+.||||+|.+||+|+|..+||||||+||.|||+++|+|+.. .|++.|++++++|++.+.
T Consensus 181 ~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p~~~~~~~~~~G~~~~~ 260 (529)
T 3npe_A 181 NGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDD 260 (529)
T ss_dssp TTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSCCCEEEEECTTCCBCCC
T ss_pred CCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcEEEEEeecCCCCcEEEEEECCCCCEEEE
Confidence 9999999999999999665535999999999999999899999999999999999999865 589999999999999888
Q ss_pred EEEeeCCccceeeeeecCCEEEEEeCCccccHHHHHHcCCeeeEEcCCCCcEEEEEeCcCCCCCceEEEEcCCeeEEccc
Q 013529 158 VPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNA 237 (441)
Q Consensus 158 ~~~~~~~~~~~Hdf~iTeny~V~~~~P~~~~~~~~l~~~~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~~~fH~~ 237 (441)
+++++|.++|||||+|||||+||+++|+.+|+.+|+. |+.++.|+|++++||+||||++++.+.++||++|+||+||++
T Consensus 261 ~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~~-g~~~~~~~p~~~tr~~VipR~~~~~~~vrw~e~~~~f~fH~~ 339 (529)
T 3npe_A 261 VEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLR-GGSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLW 339 (529)
T ss_dssp EECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGTT-TCCSEEECTTSCCEEEEEETTCSSGGGCEEEECTTCEEEEEE
T ss_pred EEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHhC-CCCceEECCCCCcEEEEEECCCCCCCceEEEEcCCEEEEEec
Confidence 8899999999999999999999999999999999875 568999999999999999999865568999999999999999
Q ss_pred cceecCC-CeEEEEEEeccCCCCcccCCccccccccCcccEEEEEEeCCCCCeeEEecC----CCCCcCCccCCCCCCCC
Q 013529 238 NAWEEEE-DEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLS----PACVDFPRINEHYMGRK 312 (441)
Q Consensus 238 NAyE~~~-g~ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~g~~~~~~l~----~~~~EfP~in~~~~G~~ 312 (441)
||||+++ |+||+|.|++.+.+. .+. .......+.|+||+||+++|+++.+.|. +.++|||+||++|.||+
T Consensus 340 NA~Ee~~~~~ivv~~~~~~~~~~-~~~----~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP~In~~~~Gr~ 414 (529)
T 3npe_A 340 NAWEDEATGEVVVIGSCMTPADS-IFN----ESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRE 414 (529)
T ss_dssp EEEEETTTTEEEEEEEEECCCCC-SCC----SSSSCCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEEEECGGGTTSC
T ss_pred ccEecCCCCeEEEEEecccCchh-hhh----ccchhhccceEEEEEcCCCCCEEeEEecccccCccccCceEChhHcCCc
Confidence 9999853 789998888765431 111 1123456789999999999999888887 47899999999999999
Q ss_pred CcEEEeeccCCCCCCCeEEEEecccCCCCCceeeeecCceeeEEEcCCCCcCcceEEeeCCC----CCCCCCCCcEEEEE
Q 013529 313 QRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREP----SSTSEEDDGYLIFH 388 (441)
Q Consensus 313 ~ry~Y~~~~~~~~~~~~l~k~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~----~~~~~EdDG~ll~~ 388 (441)
|||+|+++.++.+.+++|+|+|++| |+. +.||+++++++|||||||||+ + ++|||||||++
T Consensus 415 ~Ry~Y~~~~~~~~~~~~l~K~D~~t----g~~---------~~~~~g~~~~~~EPvFVPrp~~~~~~--~~EDDG~lLs~ 479 (529)
T 3npe_A 415 TRYAYLAVAEPWPKVSGFAKVDLST----GEL---------TKFEYGEGRFGGEPCFVPMDPAAAHP--RGEDDGYVLTF 479 (529)
T ss_dssp CSEEEEEECCSTTSCCEEEEEETTT----CCE---------EEEECCTTBCCCCCEEEECCSCSSSS--CCTTCEEEEEE
T ss_pred cceEEEeccCCCCCcceEEEEecCC----Cce---------EEEEcCCCccccCCEeeeCCCCCCCC--CCCCCcEEEEE
Confidence 9999999987767789999999996 552 479999999999999999997 4 78999999999
Q ss_pred EEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCCCCCccccChhhHHHhh
Q 013529 389 VHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELA 439 (441)
Q Consensus 389 v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp~~vP~gfHG~w~~~~~~~~~~ 439 (441)
|+|..+++|+|+||||++|+ +|||++||++||+||||+|++++||++|+
T Consensus 480 V~d~~~~~S~LlILDA~~l~--~vArv~LP~rvP~GfHG~wv~~~~l~~q~ 528 (529)
T 3npe_A 480 VHDERAGTSELLVVNAADMR--LEATVQLPSRVPFGFHGTFITGQELEAQA 528 (529)
T ss_dssp EEBSSCCCEEEEEEETTTTE--EEEEEEESSCCCCCSCEEEEEHHHHTTCC
T ss_pred EEECCCCcEEEEEEeCCCCc--cceEEECCCCCCCCccccccCHHHhhhhh
Confidence 99999999999999999998 79999999999999999999999999875
No 2
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00 E-value=8.7e-102 Score=809.14 Aligned_cols=396 Identities=26% Similarity=0.450 Sum_probs=350.9
Q ss_pred CeeEEEE-eCCcEEEEeeeecChhhHhhhhcCCceeec-cCCCCCchhhHHHHHHHhhhhhcccccCCCCCcceeEeEEE
Q 013529 1 MLHGLRI-KDGKAAYVSRYVKTSRLKQEEFFGGAKFTK-IGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYH 78 (441)
Q Consensus 1 mv~~~~f-~~G~v~y~~Rfv~T~~~~~e~~ag~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~V~~~ 78 (441)
|||+|+| +||+|+|+||||||++|++|+++||++|++ ||+.... +.+. ..+. + ..+|+|||||++|
T Consensus 74 mlh~~~f~~~G~v~y~~R~v~T~~~~~e~~ag~~~~~~~fg~~~~~-~~~~-------~~~~-~---~~~~~aNT~v~~~ 141 (490)
T 2biw_A 74 MVTAFKFPGDGRVHFQSKFVRTQGYVEEQKAGKMIYRGVFGSQPAG-GWLK-------TIFD-L---RLKNIANTNITYW 141 (490)
T ss_dssp EEEEEEECSSSCCEEEEEECCCHHHHHHHHHTSCCSBCTTSCCCSS-THHH-------HTTC-C---CBCCCCCSEEEEE
T ss_pred eEEEEEECCCCEEEEEcceEeCHHHHHHHHhCCcccccccccCCCC-chhh-------hhcc-c---ccCCCCEEEEEEE
Confidence 8999999 999999999999999999999999999999 9987542 2221 1111 0 1369999999999
Q ss_pred CCEEEEEecCCCCEEEecCCCCCccccccccCCCCC-C-CCCCCCceecCC------CCcEEEEEeeCCCCe-EEEEEEC
Q 013529 79 HGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRL-N-HPFTAHPKIDPY------TDEMFTFGYTQTPPY-VTYRVIS 149 (441)
Q Consensus 79 ~g~LlAl~E~g~P~~ld~~~~~tLeT~g~~~~~~~l-~-~~~tAHp~~Dp~------tg~~~~~g~~~~~~~-~~~~~~~ 149 (441)
+||||||||+|.||++|| .||||+|..+|+|+| . ..||||||+||. |||++|||++.+++. +.|+++|
T Consensus 142 ~g~llAl~E~~~p~~ldp---~tLeT~G~~d~~g~l~~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~~~~~~~~~~~~~ 218 (490)
T 2biw_A 142 GDRLLALWEGGQPHRLEP---SNLATIGLDDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKSSLSSTLTLLELD 218 (490)
T ss_dssp TTEEEEECTTSCCEEECT---TTCCEEEECCTTTTSCTTCCCCSCCEEESSCTTTTTCCEEEEEEEEESSEEEEEEEEEC
T ss_pred CCEEEEEEcCCCCEeccc---ccccEeeeeccCCcccCCcccccCceECccccccCCCCeEEEEEecCCCCcEEEEEEEC
Confidence 999999999999999999 699999999999999 5 489999999999 999999999876554 8899999
Q ss_pred CCCCeeeeEEEeeCCccceeeeeecCCEEEEEeCCccccHHHHHHcC---CeeeEEcCCCCcEEEEEeCcCCCCCceEEE
Q 013529 150 KDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKEN---KLIYAFDPTIKARFGVLPRYARDDLQIRWF 226 (441)
Q Consensus 150 ~~g~~~~~~~~~~~~~~~~Hdf~iTeny~V~~~~P~~~~~~~~l~~~---~~~~~~~~~~~t~~~vipR~~~~~~~v~~~ 226 (441)
++|++.+..++++|.++|||||+|||||+||+++|+.+|+.++++++ ..++.|+|++++||+||||+ + +.++||
T Consensus 219 ~~G~~~~~~~~~~~~~~~~HDfaiTeny~V~~~~P~~~~~~~~~~g~~~~~~~~~~~p~~~tr~~VipR~-~--~~v~~f 295 (490)
T 2biw_A 219 PQGKLLRQKTETFPGFAFIHDFAITPHYAIFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVPRD-G--GEIKRI 295 (490)
T ss_dssp TTSCEEEEEEEEEESCCCCCCCEECSSEEEEEECCEEECCHHHHTTSSCGGGGEEECTTSCEEEEEEETT-S--CCCEEE
T ss_pred CCCCEEeeEEEeCCCCceEeeeeccCCEEEEEeCCeEEcHHHHhhccCCccceeEeCCCCCcEEEEEECC-C--CccEEE
Confidence 99999999999999999999999999999999999999999998654 35799999999999999998 3 469999
Q ss_pred EcCCeeEEccccceecCCCeEEEEEEeccCCCC-cccCCcccc--ccccCcccEEEEEEeCCCCCeeEEecCCCCCcCCc
Q 013529 227 ELPNCYIFHNANAWEEEEDEVVLITCRVRNPDL-DMFNGPLKE--TLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPR 303 (441)
Q Consensus 227 ~~~~~~~fH~~NAyE~~~g~ivvd~~~~~~~~~-~~~~~~~~~--~~~~~~~~l~R~~idl~~g~~~~~~l~~~~~EfP~ 303 (441)
++|+||+||++||||++ |+||+|+|+|++..+ ..... ..+ ....+.++|+||+|||++|+++++.|++.++|||+
T Consensus 296 ~~~~~f~fH~~NA~Ee~-~~Iv~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~R~~i~l~~g~v~~~~l~~~~~EfP~ 373 (490)
T 2biw_A 296 PVQAGFVFHHANAFEEN-GKIILDSICYNSLPQVDTDGD-FRSTNFDNLDPGQLWRFTIDPAAATVEKQLMVSRCCEFPV 373 (490)
T ss_dssp EECCCEEEEEEEEEEET-TEEEEEEEEESCCCCCCTTCC-GGGCCGGGSCCCEEEEEEEETTTTEEEEEEEECSCEEEEE
T ss_pred ecCCCeEEecccceecC-CeEEEEEeccCCccccccccc-ccccccccCCCceEEEEEEECCCCceEEEeccCCcccccc
Confidence 99999999999999987 999999999987653 11111 111 12345689999999999999999999999999999
Q ss_pred cCCCCCCCCCcEEEeeccC---CCCCCCeEEEEecccCCCCCceeeeecCceeeEEEcCCCCcCcceEEeeCCCCCCCCC
Q 013529 304 INEHYMGRKQRYVYGSILE---NIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEE 380 (441)
Q Consensus 304 in~~~~G~~~ry~Y~~~~~---~~~~~~~l~k~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~E 380 (441)
||+++.||+|||+|+++.+ +...+++|+|+|++| |+. +.|++++++++|||+|||||++ ++|
T Consensus 374 In~~~~G~~~Ry~Y~~~~~~~~~~~~~~~l~K~D~~t----g~~---------~~~~~g~g~~~~EPvFVPrp~~--~~E 438 (490)
T 2biw_A 374 VHPQQVGRPYRYVYMGAAHHSTGNAPLQAILKVDLES----GTE---------TLRSFAPHGFAGEPIFVPRPGG--VAE 438 (490)
T ss_dssp CCGGGTTSCCSEEEEEECSSSSSCCCCCEEEEEETTT----TEE---------EEEECTTTEECCCCEEEECTTC--CST
T ss_pred cChhhCCceeeeEEEEeecCCCCCCCCCeEEEEECCC----CCE---------EEEECCCCccccCCEEecCCCC--CCC
Confidence 9999999999999999875 345789999999996 553 4788999999999999999965 799
Q ss_pred CCcEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcCCcCCCCCCccccC
Q 013529 381 DDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLS 431 (441)
Q Consensus 381 dDG~ll~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp~~vP~gfHG~w~~ 431 (441)
||||||++|+|.++++|+|+||||++|++|||||++||++||+||||+|++
T Consensus 439 DDG~ll~~V~d~~~~~S~l~IlDA~~~~~~pvArv~lP~rvP~GfHG~wv~ 489 (490)
T 2biw_A 439 DDGWLLCLIYKADLHRSELVILDAQDITAPAIATLKLKHHIPYPLHGSWAQ 489 (490)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEETTCTTSCCSEEEECSSCCCCCCCEEEEE
T ss_pred CCcEEEEEEEeCCCCceeEEEEccCCCCcCceEEEeCCCcCCCCccccccC
Confidence 999999999999999999999999999999999999999999999999986
No 3
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00 E-value=2.5e-96 Score=775.14 Aligned_cols=403 Identities=18% Similarity=0.269 Sum_probs=315.1
Q ss_pred CeeEEEEeCCcEEEEeeeecChhhHhhhhcCCceeeccCCCCCchhhHHHHHHHhhhhhcccccCCCCCcceeEeEEECC
Q 013529 1 MLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHG 80 (441)
Q Consensus 1 mv~~~~f~~G~v~y~~Rfv~T~~~~~e~~ag~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~V~~~~g 80 (441)
|||+|+|+||+|+|+||||||++|++|+++||++|++||+.+.+ +.+...+.++...+... ..+|+|||||++|+|
T Consensus 66 mlh~~~~~~G~v~y~~R~v~T~~~~~e~~agr~~~~~fg~~~~~-~p~~~~~~~~~~~~~~~---~~~~~ANt~v~~~~g 141 (533)
T 3kvc_A 66 LLHKFDFKEGHVTYHRRFIRTDAYVRAMTEKRIVITEFGTCAFP-DPCKNIFSRFFSYFRGV---EVTDNALVNIYPVGE 141 (533)
T ss_dssp EEEEEEEETTEEEEEEEECCCHHHHHHHHHTSCCSCBTTBCC-----------------------CCCCCCCSEEEEETT
T ss_pred EEEEEEEeCCEEEEEEEEecCHHHHHHHHcCCcceeccCcccCC-cchhhHHHHHHHhhccC---CCCCCCEEEEEEECC
Confidence 89999999999999999999999999999999999999986421 11222222211111111 136999999999999
Q ss_pred EEEEEecCCCCEEEecCCCCCccccccccCCCCCC-CCCCCCceecCCCCcEEEEEeeCCC---CeEEEEEECCC-----
Q 013529 81 KLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLN-HPFTAHPKIDPYTDEMFTFGYTQTP---PYVTYRVISKD----- 151 (441)
Q Consensus 81 ~LlAl~E~g~P~~ld~~~~~tLeT~g~~~~~~~l~-~~~tAHp~~Dp~tg~~~~~g~~~~~---~~~~~~~~~~~----- 151 (441)
|||||||++.||++|| +||||+|..||+++|+ ..||||||+|| |||++|||++.+. +...++.++++
T Consensus 142 ~LlAl~E~~~p~~iDp---~tLeT~G~~d~~g~l~~~~~tAHPk~Dp-tGel~~fg~~~~~~~~~~y~v~~~~~~~~~~~ 217 (533)
T 3kvc_A 142 DYYACTETNFITKVNP---ETLETIKQVDLCNYVSVNGATAHPHIEN-DGTVYNIGNCFGKNFSIAYNIVKIPPLQADKE 217 (533)
T ss_dssp EEEEECSSSEEEEECT---TTCCEEEEEEHHHHSSCSCCCSCCEECT-TSCEEEEEEECC---CCEEEEEEECCCCTTCC
T ss_pred EEEEEEcCCcCEEeCh---HHcccccccccCCccCCCccCCCCccCC-CCCEEEEeeccCCCCCcEEEEEEECccccccc
Confidence 9999999999999999 6999999999999997 58999999999 9999999998764 33334444433
Q ss_pred CCeee-eEEEe-----eCCccceeeeeecCCEEEEEeCCccccHHHHHHc----CCe---eeEEcCCCCcEEEEEeCcCC
Q 013529 152 GFMHD-PVPIT-----MSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKE----NKL---IYAFDPTIKARFGVLPRYAR 218 (441)
Q Consensus 152 g~~~~-~~~~~-----~~~~~~~Hdf~iTeny~V~~~~P~~~~~~~~l~~----~~~---~~~~~~~~~t~~~vipR~~~ 218 (441)
+.+.+ .+.++ ++.|+|||||+|||||+||+++|+.+|+.+|+++ +++ ++.|+|++++||+||||+++
T Consensus 218 ~~~~~~~v~~~i~~~~~~~p~~iHDFaiTeny~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~ 297 (533)
T 3kvc_A 218 DPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRK 297 (533)
T ss_dssp CGGGGCEEEEEEECSSTTCCBCCCCCEECSSEEEEEECSEEEC-----------CCCSGGGEEECSSCCEEEEEEETTTT
T ss_pred cccccceeEEeeccccCCCCceeeeeeecCCEEEEEeCCeEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCC
Confidence 22222 22223 3579999999999999999999999999999875 443 79999999999999999974
Q ss_pred CCCceEEEEcCCeeEEccccceecCCCeEEEEEEeccC-CCC-c-----ccCCcc--cc--ccccCcccEEEEEEeCCCC
Q 013529 219 DDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRN-PDL-D-----MFNGPL--KE--TLEDQTTELYEMRFNMKTG 287 (441)
Q Consensus 219 ~~~~v~~~~~~~~~~fH~~NAyE~~~g~ivvd~~~~~~-~~~-~-----~~~~~~--~~--~~~~~~~~l~R~~idl~~g 287 (441)
+ ..++||++++||+||++||||++ |+||+|+|+|++ .++ . .+.... ++ ......++|+||+|||+++
T Consensus 298 ~-~~~~~~~~~~~f~fH~~NA~Ee~-~~Iv~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~ 375 (533)
T 3kvc_A 298 K-YINNKYRTSPFNLFHHINTYEDH-EFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNID 375 (533)
T ss_dssp E-EEEEEEEECCEEEEEEEEEEEET-TEEEEEEEEEESSSCGGGGCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCC
T ss_pred C-cccEEEEeCCeeEEeeeeeEEeC-CEEEEEEeeeCCchhhhhhhhhhhhcccchhccccccccCCceEEEEEEeCCcc
Confidence 2 23578999999999999999987 999999999987 432 1 111110 00 0114567899999999875
Q ss_pred ------------------------C--eeEEecCC--C-CCcCCccCC-CCCCCCCcEEEeeccCCCCCCCeEEEEeccc
Q 013529 288 ------------------------L--ASQKKLSP--A-CVDFPRINE-HYMGRKQRYVYGSILENIAKVTGMIKFDLRA 337 (441)
Q Consensus 288 ------------------------~--~~~~~l~~--~-~~EfP~in~-~~~G~~~ry~Y~~~~~~~~~~~~l~k~D~~t 337 (441)
+ ++.+.|++ . ++|||+||+ ++.||+|||+|+++.+ .+.+++|+|+|++|
T Consensus 376 ~~~~~~nl~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~-~~~~~~l~K~D~~t 454 (533)
T 3kvc_A 376 KADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLGLN-HFVPDRLCKLNVKT 454 (533)
T ss_dssp GGGTTSBCCCCTTCCCEEEECTTSEEEEECEEEECBTTEEEEEEECCHHHHTTSCCCEEEEEEEE-TTEEEEEEEEETTT
T ss_pred cccccccccccccccceeeeccCCceeeeeeeeccCCcccccCceECHHHhCCCcccEEEEeccC-CCCCceeEEEEcCC
Confidence 1 34566764 6 899999998 7999999999998865 35689999999996
Q ss_pred CCCCCceeeeecCceeeEEEcCCCCcCcceEEeeCCCCCCCCCCCcEEEEEEEeCCC--CeeEEEEEeCCCCCCCceEEE
Q 013529 338 EPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENT--GKSAVYVIDAKTMSADPVAVI 415 (441)
Q Consensus 338 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~EdDG~ll~~v~d~~~--~~s~L~VlDA~~l~~gpvAr~ 415 (441)
|+. ..|.++++++|||||||||++ ++|||||||++|+|..+ ++|+|+||||++|+ +|||+
T Consensus 455 ----g~~----------~~w~~~~~~~~EPiFVPrp~~--~~EDDG~lLs~V~d~~~~~~~s~LlILDA~~l~--~vArv 516 (533)
T 3kvc_A 455 ----KET----------WVWQEPDSYPSEPIFVSHPDA--LEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLS--EVARA 516 (533)
T ss_dssp ----CCE----------EEECCTTCBCCCCEEEECTTC--CSTTCEEEEEEEECCSTTSCSEEEEEEETTTCC--EEEEE
T ss_pred ----CCE----------EEEeCCCccccCceeecCCCC--CCCCCcEEEEEEEeCCcCCCccEEEEEeCCCCh--hhEEE
Confidence 553 345789999999999999965 79999999999999985 66899999999998 79999
Q ss_pred EcCCcCCCCCCccccCh
Q 013529 416 ELPHRVPYGFHGIFLSE 432 (441)
Q Consensus 416 ~Lp~~vP~gfHG~w~~~ 432 (441)
+||++||+||||+|+++
T Consensus 517 ~lP~rvP~GfHG~w~~~ 533 (533)
T 3kvc_A 517 EVEINIPVTFHGLFKKS 533 (533)
T ss_dssp EESSCCCCCCEEEEEEC
T ss_pred EeCCCCCCCccccccCC
Confidence 99999999999999864
No 4
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=24.25 E-value=5.8e+02 Score=25.94 Aligned_cols=107 Identities=17% Similarity=0.106 Sum_probs=57.0
Q ss_pred EEEEeCCCCCeeEEecCCCCCcCCccCCCCCCCCCcEEEeeccCCCCCCCeEEEEecccCCCCCceeeeecCceeeEEEc
Q 013529 279 EMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDL 358 (441)
Q Consensus 279 R~~idl~~g~~~~~~l~~~~~EfP~in~~~~G~~~ry~Y~~~~~~~~~~~~l~k~D~~t~~~~g~~~~~~~~~~~~~~~~ 358 (441)
-..||+.++++..+.-.........+++ .-||+|.... -+.|..+|+.+. +++.. .....
T Consensus 179 V~viD~~t~~v~~~i~~g~~p~~v~~Sp-----DGr~lyv~~~-----dg~V~viD~~~~--t~~~v--------~~i~~ 238 (567)
T 1qks_A 179 IALIDGSTYEIKTVLDTGYAVHISRLSA-----SGRYLFVIGR-----DGKVNMIDLWMK--EPTTV--------AEIKI 238 (567)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECT-----TSCEEEEEET-----TSEEEEEETTSS--SCCEE--------EEEEC
T ss_pred EEEEECCCCeEEEEEeCCCCccceEECC-----CCCEEEEEcC-----CCeEEEEECCCC--CCcEe--------EEEec
Confidence 4566777776654322222222334444 3468887653 257999999621 13311 11222
Q ss_pred CCCCcCcceEEeeCCCCCCCCCCCcEEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcC
Q 013529 359 GPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELP 418 (441)
Q Consensus 359 ~~~~~~~EPvFVPrp~~~~~~EdDG~ll~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp 418 (441)
| .+|.-+.=..= ..-|..||++.-+.. ..+.|+|+.+++ ++.++.+.
T Consensus 239 --G---~~P~~ia~s~~--~~pDGk~l~v~n~~~----~~v~ViD~~t~~--~~~~i~~~ 285 (567)
T 1qks_A 239 --G---SEARSIETSKM--EGWEDKYAIAGAYWP----PQYVIMDGETLE--PKKIQSTR 285 (567)
T ss_dssp --C---SEEEEEEECCS--TTCTTTEEEEEEEET----TEEEEEETTTCC--EEEEEECC
T ss_pred --C---CCCceeEEccc--cCCCCCEEEEEEccC----CeEEEEECCCCc--EEEEEecc
Confidence 2 23443322100 001344887776653 468899999887 89988875
No 5
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=15.32 E-value=2.9e+02 Score=28.69 Aligned_cols=30 Identities=7% Similarity=-0.104 Sum_probs=22.1
Q ss_pred CCCeeEEEEEeCCCCCCCceEEEEcCCcCCCCC
Q 013529 393 NTGKSAVYVIDAKTMSADPVAVIELPHRVPYGF 425 (441)
Q Consensus 393 ~~~~s~L~VlDA~~l~~gpvAr~~Lp~~vP~gf 425 (441)
+...+-+-++|+.+++ .++++.++. -|.+.
T Consensus 171 ~~~~~~vtvID~~t~~--v~~qI~Vgg-~pd~~ 200 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWE--VAWQVLVSG-NLDNC 200 (595)
T ss_dssp GGEEEEEEEEETTTTE--EEEEEEESS-CCCCE
T ss_pred cccCceEEEEECCCCe--EEEEEEeCC-Cccce
Confidence 3456789999999886 889999864 34443
No 6
>4guc_A Protein BA_2500; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: PGE; 1.40A {Bacillus anthracis}
Probab=14.12 E-value=4.9e+02 Score=20.94 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=32.3
Q ss_pred CCCCcEEEEEeeCCC---CeEEEEEEC----CCCCeeeeEEEeeCCccceeeeeecCCEEEEE
Q 013529 126 PYTDEMFTFGYTQTP---PYVTYRVIS----KDGFMHDPVPITMSAPIMMHDFAITENYAIFL 181 (441)
Q Consensus 126 p~tg~~~~~g~~~~~---~~~~~~~~~----~~g~~~~~~~~~~~~~~~~Hdf~iTeny~V~~ 181 (441)
-+||..+.+....+. ..+-++.++ ++|.+.|-. -|||+..++++.+|-
T Consensus 34 lktGdtf~it~~~~~~d~g~~KIyrv~~~~~~~g~L~RYk--------TI~d~~~~~~~~~f~ 88 (120)
T 4guc_A 34 LKHGDTFDVTIYTGGKDTGIVKIYQLSGNENDEINLHRYK--------TIYDSGLKHNYGRFV 88 (120)
T ss_dssp EETTCEEEEEEECCSSBCCEEEEEEECSCTTCSCCEEEEE--------EEECCCCCTTEEEEE
T ss_pred cccCCEEEEEEEcCCCccceEEEEEEccCCCCCcceEEEE--------EeccCCCcCCeeEEE
Confidence 348998888775431 236666664 468877655 348889999987764
No 7
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=12.62 E-value=5.8e+02 Score=24.98 Aligned_cols=79 Identities=27% Similarity=0.240 Sum_probs=44.2
Q ss_pred cEEEeeccCCCCCCCeEEEEecccCCCCCceeeeecCceeeEEEcCCCCcCcceEEeeCCCCCCCCCCCcEEEEEEEeCC
Q 013529 314 RYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDEN 393 (441)
Q Consensus 314 ry~Y~~~~~~~~~~~~l~k~D~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~EPvFVPrp~~~~~~EdDG~ll~~v~d~~ 393 (441)
+++|.+........+.|..+|+.|. +.. ..... |..| =++..|+ ..+|.+.-....
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~----~vv--------~~I~v--G~~P---gia~SpD-------gk~lyVan~~~~ 140 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTG----RIL--------GMTDG--GFLP---HPVAAED-------GSFFAQASTVFE 140 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTT----EEE--------EEEEE--CSSC---EEEECTT-------SSCEEEEEEEEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCC----EEE--------EEEEC--CCCC---ceEECCC-------CCEEEEEecccc
Confidence 5688776431111178999999964 321 12222 3333 2333442 234544332111
Q ss_pred -----CCeeEEEEEeCCCCCCCceEEEEcC
Q 013529 394 -----TGKSAVYVIDAKTMSADPVAVIELP 418 (441)
Q Consensus 394 -----~~~s~L~VlDA~~l~~gpvAr~~Lp 418 (441)
.....+.|+|+.+++ .++++.+|
T Consensus 141 ~~~~G~~~~~VsviD~~t~~--vv~~I~v~ 168 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFL--PIADIELP 168 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCC--EEEEEEET
T ss_pred ccccCCCCCEEEEEECCCCc--EEEEEECC
Confidence 123589999999887 89999997
No 8
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=11.45 E-value=1.9e+02 Score=26.73 Aligned_cols=119 Identities=11% Similarity=0.165 Sum_probs=67.0
Q ss_pred EeEEECCEEEEEe-cCCCCEEEecCCCCCccccccccCCCCCCCCCCCCceecCCCCcEEEEEeeCCCCeEEEEEECCC-
Q 013529 74 ALIYHHGKLLVLS-EIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKD- 151 (441)
Q Consensus 74 ~V~~~~g~LlAl~-E~g~P~~ld~~~~~tLeT~g~~~~~~~l~~~~tAHp~~Dp~tg~~~~~g~~~~~~~~~~~~~~~~- 151 (441)
.+...+++||.++ ..+.-+.+|+ .||+.++.+.+.+.= -.+| ++.+.+|. +- +.. .++.+|++
T Consensus 91 Git~~g~~ly~ltw~~~~v~v~D~---~t~~~~~ti~~~~eG-~glt------~dg~~L~~-Sd--Gs~--~i~~iDp~T 155 (262)
T 3nol_A 91 GISDWKDKIVGLTWKNGLGFVWNI---RNLRQVRSFNYDGEG-WGLT------HNDQYLIM-SD--GTP--VLRFLDPES 155 (262)
T ss_dssp EEEEETTEEEEEESSSSEEEEEET---TTCCEEEEEECSSCC-CCEE------ECSSCEEE-CC--SSS--EEEEECTTT
T ss_pred EEEEeCCEEEEEEeeCCEEEEEEC---ccCcEEEEEECCCCc-eEEe------cCCCEEEE-EC--CCC--eEEEEcCCC
Confidence 3667899999994 4667889998 699999998886521 1233 22345543 22 222 36677764
Q ss_pred CCeeeeEEEeeC-Cc-cceeeeeecCCEEEEEeCCccccHHHHHHcCCeeeEEcCCCCcEEEEEeCcCCCCCceEEEEcC
Q 013529 152 GFMHDPVPITMS-AP-IMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELP 229 (441)
Q Consensus 152 g~~~~~~~~~~~-~~-~~~Hdf~iTeny~V~~~~P~~~~~~~~l~~~~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~ 229 (441)
.++.+.+.+... ++ ..+-+....+.. |+. + .|. ...|.+|+=.+ +..+.|++++
T Consensus 156 ~~v~~~I~V~~~g~~~~~lNELe~~~G~-lya------n------------~w~---~~~I~vIDp~t--G~V~~~Id~~ 211 (262)
T 3nol_A 156 LTPVRTITVTAHGEELPELNELEWVDGE-IFA------N------------VWQ---TNKIVRIDPET--GKVTGIIDLN 211 (262)
T ss_dssp CSEEEEEECEETTEECCCEEEEEEETTE-EEE------E------------ETT---SSEEEEECTTT--CBEEEEEECT
T ss_pred CeEEEEEEeccCCccccccceeEEECCE-EEE------E------------Ecc---CCeEEEEECCC--CcEEEEEECC
Confidence 676665544321 11 222222222332 221 0 233 34788887665 4567788875
Q ss_pred Ce
Q 013529 230 NC 231 (441)
Q Consensus 230 ~~ 231 (441)
.+
T Consensus 212 ~L 213 (262)
T 3nol_A 212 GI 213 (262)
T ss_dssp TG
T ss_pred cC
Confidence 43
No 9
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=11.09 E-value=1.9e+02 Score=26.25 Aligned_cols=72 Identities=10% Similarity=0.181 Sum_probs=44.5
Q ss_pred EeEEECCEEEEE-ecCCCCEEEecCCCCCccccccccCCCCCCCCCCCCceecCCCCcEEEEEeeCCCCeEEEEEECC-C
Q 013529 74 ALIYHHGKLLVL-SEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISK-D 151 (441)
Q Consensus 74 ~V~~~~g~LlAl-~E~g~P~~ld~~~~~tLeT~g~~~~~~~l~~~~tAHp~~Dp~tg~~~~~g~~~~~~~~~~~~~~~-~ 151 (441)
.+..++++||.+ |..+.-+.+|+ .||+.++.+.+.+. .-.+| ++.+.+|. +- +.. .++++|+ +
T Consensus 69 Gi~~~~~~ly~ltw~~~~v~v~D~---~tl~~~~ti~~~~~-Gwglt------~dg~~L~v-Sd--gs~--~l~~iDp~t 133 (243)
T 3mbr_X 69 GIVAWRDRLIQLTWRNHEGFVYDL---ATLTPRARFRYPGE-GWALT------SDDSHLYM-SD--GTA--VIRKLDPDT 133 (243)
T ss_dssp EEEEETTEEEEEESSSSEEEEEET---TTTEEEEEEECSSC-CCEEE------ECSSCEEE-EC--SSS--EEEEECTTT
T ss_pred EEEEeCCEEEEEEeeCCEEEEEEC---CcCcEEEEEeCCCC-ceEEe------eCCCEEEE-EC--CCC--eEEEEeCCC
Confidence 356679999999 56777889998 69999999887642 11222 22345543 32 222 3566775 4
Q ss_pred CCeeeeEEE
Q 013529 152 GFMHDPVPI 160 (441)
Q Consensus 152 g~~~~~~~~ 160 (441)
.++.+++.+
T Consensus 134 ~~~~~~I~V 142 (243)
T 3mbr_X 134 LQQVGSIKV 142 (243)
T ss_dssp CCEEEEEEC
T ss_pred CeEEEEEEE
Confidence 555554443
No 10
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=10.63 E-value=3.3e+02 Score=25.02 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=28.8
Q ss_pred eEEECCEEEEE-ecCCCCEEEecCCCCCccccccccCCCCC
Q 013529 75 LIYHHGKLLVL-SEIDKPYVLKVLKDGDLQTLGMLDYDKRL 114 (441)
Q Consensus 75 V~~~~g~LlAl-~E~g~P~~ld~~~~~tLeT~g~~~~~~~l 114 (441)
+-+.+|+|||- |+...-+.+|| .|.+-++.+++.+-.
T Consensus 177 Le~~~G~lyan~w~~~~I~vIDp---~tG~V~~~Id~~~L~ 214 (262)
T 3nol_A 177 LEWVDGEIFANVWQTNKIVRIDP---ETGKVTGIIDLNGIL 214 (262)
T ss_dssp EEEETTEEEEEETTSSEEEEECT---TTCBEEEEEECTTGG
T ss_pred eEEECCEEEEEEccCCeEEEEEC---CCCcEEEEEECCcCc
Confidence 44668999988 46777788888 699999999987543
Done!