Query 013529
Match_columns 441
No_of_seqs 135 out of 1033
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 12:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013529.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013529hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zaka2 g.41.2.1 (A:128-158) M 41.0 5.9 0.00043 22.9 1.5 15 123-137 3-17 (31)
2 d1qksa2 b.70.2.1 (A:136-567) C 21.1 39 0.0028 30.7 4.5 33 384-418 381-413 (432)
3 d1hzua2 b.70.2.1 (A:118-543) C 17.6 48 0.0035 29.6 4.3 33 384-418 375-407 (426)
4 d1k91a_ b.104.1.1 (A:) Calreti 17.6 27 0.0019 20.8 1.5 11 365-375 1-11 (37)
5 d1m7ja2 b.92.1.6 (A:420-480) N 15.1 11 0.00082 25.0 -0.8 35 396-432 7-41 (61)
6 d2mysa1 b.34.3.1 (A:34-79) Myo 12.5 57 0.0042 20.2 2.2 23 368-397 5-27 (46)
7 d2ap1a2 c.55.1.10 (A:1-117) Pu 12.3 1.4E+02 0.01 21.0 5.0 29 134-162 3-31 (117)
8 d1z6ra2 c.55.1.10 (A:82-210) M 9.6 1.9E+02 0.013 20.6 5.0 34 130-163 3-36 (129)
9 d1igqa_ b.34.1.3 (A:) Transcri 8.1 49 0.0035 21.1 0.5 34 205-252 11-44 (54)
10 d1yq2a3 b.18.1.5 (A:4-219) bet 7.9 3.3E+02 0.024 21.6 6.3 27 71-97 144-171 (216)
No 1
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=40.98 E-value=5.9 Score=22.85 Aligned_cols=15 Identities=27% Similarity=0.844 Sum_probs=11.9
Q ss_pred eecCCCCcEEEEEee
Q 013529 123 KIDPYTDEMFTFGYT 137 (441)
Q Consensus 123 ~~Dp~tg~~~~~g~~ 137 (441)
+.||.||++|-.-++
T Consensus 3 R~DP~TG~iYH~~f~ 17 (31)
T d1zaka2 3 RLDPVTGKIYHLKYS 17 (31)
T ss_dssp EECTTTCCEEESSSS
T ss_pred cCCCCCCcEeEEecC
Confidence 579999999876554
No 2
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=21.08 E-value=39 Score=30.74 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=25.6
Q ss_pred EEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcC
Q 013529 384 YLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELP 418 (441)
Q Consensus 384 ~ll~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp 418 (441)
+|++.++...+..+.++|+|+++++ .++++.-|
T Consensus 381 ~v~~S~~~~~~~~g~i~i~D~~T~k--~~~~i~~~ 413 (432)
T d1qksa2 381 EVWFSVWNGKDQESALVVVDDKTLE--LKHVIKDE 413 (432)
T ss_dssp EEEEEEECCTTSCCEEEEEETTTTE--EEEEECCT
T ss_pred EEEEEEecCCCCCCcEEEEECCCce--EEeEecCC
Confidence 6766666666677899999999987 67777664
No 3
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.57 E-value=48 Score=29.59 Aligned_cols=33 Identities=33% Similarity=0.447 Sum_probs=25.4
Q ss_pred EEEEEEEeCCCCeeEEEEEeCCCCCCCceEEEEcC
Q 013529 384 YLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELP 418 (441)
Q Consensus 384 ~ll~~v~d~~~~~s~L~VlDA~~l~~gpvAr~~Lp 418 (441)
+|++.++......+.+.|+|+++++ .++++.-+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~k--~~~~i~~~ 407 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTLK--LKAVVKDP 407 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTTE--EEEEECCT
T ss_pred EEEEEEecCCCCCCeEEEEECCCCe--EEEEECCC
Confidence 6777777666677889999999886 67777554
No 4
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.55 E-value=27 Score=20.82 Aligned_cols=11 Identities=9% Similarity=0.311 Sum_probs=9.4
Q ss_pred cceEEeeCCCC
Q 013529 365 SEAVFVPREPS 375 (441)
Q Consensus 365 ~EPvFVPrp~~ 375 (441)
|||-|||.|.+
T Consensus 1 ~eP~~IpDp~A 11 (37)
T d1k91a_ 1 GKPEHIPDPDA 11 (37)
T ss_dssp CCCSEEECSSC
T ss_pred CCccccCCCCC
Confidence 69999999864
No 5
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=15.12 E-value=11 Score=25.00 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=26.8
Q ss_pred eeEEEEEeCCCCCCCceEEEEcCCcCCCCCCccccCh
Q 013529 396 KSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSE 432 (441)
Q Consensus 396 ~s~L~VlDA~~l~~gpvAr~~Lp~~vP~gfHG~w~~~ 432 (441)
..+|+|||..++.+ -|...-|+..+.|++..|+.-
T Consensus 7 ~ADlvvfDp~~i~d--~~~~~~~~~~~~Gi~~v~VnG 41 (61)
T d1m7ja2 7 YADLVVFDPATVAD--SATFEHPTERAAGIHSVYVNG 41 (61)
T ss_dssp BCCEEEECTTTCBC--CCCSSSTTCCCBSEEEEEETT
T ss_pred CCCEEEECHHHccC--cccccccccccceeEEEEECC
Confidence 46899999998863 466677888888888877754
No 6
>d2mysa1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=12.45 E-value=57 Score=20.23 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=16.4
Q ss_pred EEeeCCCCCCCCCCCcEEEEEEEeCCCCee
Q 013529 368 VFVPREPSSTSEEDDGYLIFHVHDENTGKS 397 (441)
Q Consensus 368 vFVPrp~~~~~~EdDG~ll~~v~d~~~~~s 397 (441)
+|||.+ -+|||-+.+-....+.-
T Consensus 5 vwVpD~-------ke~yv~~~Iks~~Gdkv 27 (46)
T d2mysa1 5 VFVVHP-------KQSFVKGTIQSKEGGKV 27 (46)
T ss_dssp EEEECS-------SSSEEEEEEEEECSSEE
T ss_pred EEcccC-------cccEEEEEEEEccCCEE
Confidence 788885 47899988876554443
No 7
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}
Probab=12.27 E-value=1.4e+02 Score=21.01 Aligned_cols=29 Identities=7% Similarity=0.140 Sum_probs=23.2
Q ss_pred EEeeCCCCeEEEEEECCCCCeeeeEEEee
Q 013529 134 FGYTQTPPYVTYRVISKDGFMHDPVPITM 162 (441)
Q Consensus 134 ~g~~~~~~~~~~~~~~~~g~~~~~~~~~~ 162 (441)
+|+..+...+.+-.+|.+|++..+..++.
T Consensus 3 iGiDiGgT~i~~~l~d~~g~i~~~~~~~t 31 (117)
T d2ap1a2 3 YGFDIGGTKIALGVFDSTRRLQWEKRVPT 31 (117)
T ss_dssp EEEEECSSEEEEEEEETTCCEEEEEEEEC
T ss_pred EEEEECcceEEEEEEeCCCCEEEEEEEee
Confidence 77877878888999999999887665543
No 8
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}
Probab=9.60 E-value=1.9e+02 Score=20.64 Aligned_cols=34 Identities=0% Similarity=-0.124 Sum_probs=26.1
Q ss_pred cEEEEEeeCCCCeEEEEEECCCCCeeeeEEEeeC
Q 013529 130 EMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMS 163 (441)
Q Consensus 130 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 163 (441)
.++..|+..+...+.+...|.+|++..+..++++
T Consensus 3 ~~~~l~i~i~~~~i~~~l~Dl~G~~l~~~~~~~~ 36 (129)
T d1z6ra2 3 AWHYLSLRISRGEIFLALRDLSSKLVVEESQELA 36 (129)
T ss_dssp TCEEEEEEEETTEEEEEEEETTCCEEEEEEEECC
T ss_pred ceEEEEEEECCCEEEEEEEcCCCCEEEEEEeecc
Confidence 3456677777778999999999999877665554
No 9
>d1igqa_ b.34.1.3 (A:) Transcriptional repressor protein KorB {Escherichia coli [TaxId: 562]}
Probab=8.09 E-value=49 Score=21.11 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=21.5
Q ss_pred CCCcEEEEEeCcCCCCCceEEEEcCCeeEEccccceecCCCeEEEEEE
Q 013529 205 TIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITC 252 (441)
Q Consensus 205 ~~~t~~~vipR~~~~~~~v~~~~~~~~~~fH~~NAyE~~~g~ivvd~~ 252 (441)
++++++.+=.|.+ .....|++ |||++++.-+|.+
T Consensus 11 gR~Arl~LnrRP~--~~G~awlk------------yEDdG~e~E~dl~ 44 (54)
T d1igqa_ 11 ERPARLILNRRPP--AEGYAWLK------------YEDDGQEFEANLA 44 (54)
T ss_dssp TEEEEECTTBCCS--STTEEEEE------------ETTTCCEEEEEGG
T ss_pred CchhhhhhcCCCc--ccceEEEE------------EecCCeEEEEEcc
Confidence 5667765544443 35677887 7787567767643
No 10
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]}
Probab=7.94 E-value=3.3e+02 Score=21.64 Aligned_cols=27 Identities=7% Similarity=0.106 Sum_probs=22.0
Q ss_pred ceeEeEEECCEEEEEecCCC-CEEEecC
Q 013529 71 GNTALIYHHGKLLVLSEIDK-PYVLKVL 97 (441)
Q Consensus 71 aNt~V~~~~g~LlAl~E~g~-P~~ld~~ 97 (441)
....-++.+|++++..++|. |+++|+.
T Consensus 144 ~~~a~V~vNG~~vG~~~ggy~pf~~DiT 171 (216)
T d1yq2a3 144 ESRYKVWVNGQEIGVGSGSRLAQEFDVS 171 (216)
T ss_dssp ESCEEEEETTEEEEEECCTTSCEEEECT
T ss_pred ceeEEEEECCEEEeEEcCCeEEEEEECh
Confidence 33346788999999999995 9999984
Done!