Query 013530
Match_columns 441
No_of_seqs 292 out of 1516
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:47:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 1.5E-46 3.4E-51 376.5 24.2 269 71-342 20-291 (317)
2 KOG1470 Phosphatidylinositol t 100.0 4.7E-37 1E-41 302.5 18.2 198 94-313 47-245 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 2.8E-31 6.1E-36 238.5 10.1 156 145-310 3-159 (159)
4 smart00516 SEC14 Domain in hom 100.0 1.8E-29 4E-34 226.4 15.2 155 144-312 4-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 1.3E-25 2.8E-30 198.8 14.8 144 154-310 14-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.5 2.2E-14 4.7E-19 128.4 3.8 139 154-314 7-147 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.7 2.3E-08 5E-13 74.7 5.3 47 74-121 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 98.2 8.3E-06 1.8E-10 83.1 9.7 127 155-302 88-214 (467)
9 PF14555 UBA_4: UBA-like domai 67.6 16 0.00035 25.5 5.0 36 75-119 2-37 (43)
10 PF02845 CUE: CUE domain; Int 67.3 17 0.00037 25.2 5.0 38 75-120 3-40 (42)
11 smart00546 CUE Domain that may 60.3 24 0.00051 24.5 4.7 38 75-120 4-41 (43)
12 COG4479 Uncharacterized protei 42.2 65 0.0014 25.4 4.8 56 70-125 14-72 (74)
13 PF06972 DUF1296: Protein of u 32.8 1.8E+02 0.0039 22.2 5.7 40 73-120 5-44 (60)
14 PRK14136 recX recombination re 29.4 36 0.00078 34.4 2.1 23 98-120 279-301 (309)
15 COG2137 OraA Uncharacterized p 26.0 98 0.0021 28.7 4.2 32 90-121 133-164 (174)
16 PF14213 DUF4325: Domain of un 25.9 2.1E+02 0.0046 22.1 5.6 49 214-267 17-67 (74)
17 KOG1838 Alpha/beta hydrolase [ 24.9 5E+02 0.011 27.5 9.6 89 158-271 122-216 (409)
18 PF11964 SpoIIAA-like: SpoIIAA 24.3 3E+02 0.0066 22.2 6.6 75 181-274 12-87 (109)
19 PRK12822 phospho-2-dehydro-3-d 23.3 2.5E+02 0.0054 29.1 6.8 86 149-245 205-290 (356)
20 COG5177 Uncharacterized conser 22.4 1.8E+02 0.004 31.5 5.8 31 62-92 437-467 (769)
21 TIGR00034 aroFGH phospho-2-deh 21.6 2.2E+02 0.0047 29.4 6.0 68 148-226 199-266 (344)
22 PF03641 Lysine_decarbox: Poss 20.9 1.5E+02 0.0033 25.8 4.3 43 254-298 86-133 (133)
23 PRK09261 phospho-2-dehydro-3-d 20.2 5.2E+02 0.011 26.8 8.4 67 149-226 205-272 (349)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-46 Score=376.55 Aligned_cols=269 Identities=45% Similarity=0.729 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCcccccchhhHhhhhhccc
Q 013530 71 AAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDEVQSCYP 150 (441)
Q Consensus 71 ~~E~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~v~~~~p 150 (441)
+.+++.++++| |+..+++++...+|+.+|||||||++||+++|++||.+++.||+++..+.|..++ .....+.+++|
T Consensus 20 ~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~--~~~~~~~~~~~ 96 (317)
T KOG1471|consen 20 ESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDF--EEDDELLKYYP 96 (317)
T ss_pred HHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhcc--ccchhhhhhcc
Confidence 55677777777 9989999997455557999999999999999999999999999999999998762 33344566899
Q ss_pred ccccccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCCCCcCCcc
Q 013530 151 HGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFG 230 (441)
Q Consensus 151 ~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G~sl~~~~ 230 (441)
++++|+|++|+||++.+.|..|...++..+...++.++++..+|+.+...++.|....+++++|+++|+|++|+++.++.
T Consensus 97 ~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~ 176 (317)
T KOG1471|consen 97 QGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLL 176 (317)
T ss_pred ccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHH
Confidence 99999999999999999999999999999999999999999999999998888887778899999999999999999999
Q ss_pred hhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCCchhHHHccCCCCCCCccCCCC
Q 013530 231 KVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGT 310 (441)
Q Consensus 231 ~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~LP~~yGGt 310 (441)
...+.++++++.+++++||++++++||||+|++|+++|++|||||+++|++||++++.++.+.|+++|+++.||.+|||+
T Consensus 177 ~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~yGG~ 256 (317)
T KOG1471|consen 177 KPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEYGGT 256 (317)
T ss_pred HHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999977777899999999999999999999
Q ss_pred CCCCC---CCCcccCCCCCCCChhhhhhhhcCccc
Q 013530 311 CSCPN---EGGCLKSNKGPWSDPGIMKLVHAGNAM 342 (441)
Q Consensus 311 ~~~~~---~ggc~~~~~gpw~dp~~~~~~~~~~~~ 342 (441)
|.+.+ .++|..++.+||.++.+.+........
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (317)
T KOG1471|consen 257 CGDLDDPNGGGCDLSDEGPWKEPEIKKGKQEIEEF 291 (317)
T ss_pred ccccccccCCcCccccccccccccccccccccccc
Confidence 99973 567999999999998877665554443
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=4.7e-37 Score=302.46 Aligned_cols=198 Identities=31% Similarity=0.458 Sum_probs=172.0
Q ss_pred CCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCC-cccccchhhHhhhhhcccccccccCCCCCeEEEEEcCcCC
Q 013530 94 HDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDT-IMQDFVYEEYDEVQSCYPHGYHGVDKEGRPVYIERLGQID 172 (441)
Q Consensus 94 ~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~-i~~d~~~~el~~v~~~~p~~~hG~Dk~GRPV~i~rlg~~d 172 (441)
.+| .+++|||||++||+++|.+||.++|.||+.+++.. +..+....+++... . +++|.|++||||+|+++....
T Consensus 47 ~~d-~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK-~---yi~G~D~~gRPVl~~~~~~~~ 121 (324)
T KOG1470|consen 47 CSD-ACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGK-A---YILGHDKDGRPVLYLRPRPHR 121 (324)
T ss_pred CcH-HHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCc-E---EEecccCCCCeEEEEecCCCC
Confidence 456 59999999999999999999999999999999877 44443333443322 2 356899999999999877665
Q ss_pred CcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCCCCcCCcchhHHHHHHHHHHHhcccccccc
Q 013530 173 PSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEIL 252 (441)
Q Consensus 173 ~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G~sl~~~~~~~~~llk~i~kilq~~YPerL 252 (441)
++. .+.+++.++.||+||.++..+ ...++++++++|++|++++|++ ..+.+.+++++|+||||||
T Consensus 122 qn~----~t~~~~~r~~Vy~mE~Ai~~l--------p~~qe~~~~L~D~~~fs~sN~d---~~~~k~~~~~lq~hYPErL 186 (324)
T KOG1470|consen 122 QNT----KTQKELERLLVYTLENAILFL--------PPGQEQFVWLFDLTGFSMSNPD---IKFLKELLHILQDHYPERL 186 (324)
T ss_pred CCC----CCHHHHHHHHHHHHHHHHHhC--------CCCcceEEEEEecccCcccCCC---cHHHHHHHHHHHHhChHHh
Confidence 554 389999999999999998875 3467889999999999999988 7899999999999999999
Q ss_pred cEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCCchhHHHccCCCCCCCccCCCCCCC
Q 013530 253 HQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGTCSC 313 (441)
Q Consensus 253 ~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~LP~~yGGt~~~ 313 (441)
+..+|+|+||+|..+|++|||||+|+|++||.|+.+. ..|.+|||+++||..|||+...
T Consensus 187 g~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~--~~l~~~~d~~~l~s~~GG~~~~ 245 (324)
T KOG1470|consen 187 GKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK--DDLSEYFDESQLPSLFGGKLLF 245 (324)
T ss_pred hhhhhcCChHHHHHHHHHhhhccChhhhceeEEecCh--hHHHhhCCccccchhhCCCccc
Confidence 9999999999999999999999999999999999753 4599999999999999997655
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.97 E-value=2.8e-31 Score=238.47 Aligned_cols=156 Identities=33% Similarity=0.559 Sum_probs=129.8
Q ss_pred hhhcccccccccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCCC
Q 013530 145 VQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGV 224 (441)
Q Consensus 145 v~~~~p~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G~ 224 (441)
+.+.++.+++|+|++||||++++++++|+... +.+++++++++.+|.+++...+ ..+++|+++|+|++|+
T Consensus 3 ~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~----~~~~~~~~~~~~~E~~~~~~~~------~~~~~~~~~iiD~~g~ 72 (159)
T PF00650_consen 3 ILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKF----SPEDVIRFFVYLLERMLKRMPE------GGQVEGIVVIIDLSGF 72 (159)
T ss_dssp HHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-----HHHHHHHHHHHHHHHHHTHHH------TSHHH-EEEEEE-TT-
T ss_pred HHCCeeEEECCCCCCcCEEEEEEcccCCCCcC----CHHHHHHHHHHHHHHHHhhhcc------cccceeEEEEEeCCCc
Confidence 45677888999999999999999999999864 7899999999999999876421 2578999999999999
Q ss_pred CcCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecC-CchhHHHccCCCCCC
Q 013530 225 NWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGY-KFHDKLLEVIDSSQL 303 (441)
Q Consensus 225 sl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~-~~~~~L~e~Id~~~L 303 (441)
+++++......+++.++++++++||++++++||||+|++|+++|+++++||+++|++||+++++ ++.+.|.++|++++|
T Consensus 73 ~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~l 152 (159)
T PF00650_consen 73 SLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQL 152 (159)
T ss_dssp -HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGS
T ss_pred eEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHC
Confidence 9999875558999999999999999999999999999999999999999999999999999965 455799999999999
Q ss_pred CccCCCC
Q 013530 304 PDFLGGT 310 (441)
Q Consensus 304 P~~yGGt 310 (441)
|.+|||+
T Consensus 153 P~~~GG~ 159 (159)
T PF00650_consen 153 PVEYGGT 159 (159)
T ss_dssp BGGGTSS
T ss_pred chhcCCC
Confidence 9999997
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.96 E-value=1.8e-29 Score=226.43 Aligned_cols=155 Identities=37% Similarity=0.580 Sum_probs=140.9
Q ss_pred hhhhcccccccccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCC
Q 013530 144 EVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQG 223 (441)
Q Consensus 144 ~v~~~~p~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G 223 (441)
....++++++ |.|++||||++++++++++... +.+++++++++.+|.++.... ...++.++++|+|++|
T Consensus 4 ~~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~~----~~~~~~~~~~~~~e~~~~~~~------~~~~~~~~~~i~D~~~ 72 (158)
T smart00516 4 LGKAYIPGGR-GYDKDGRPVLIFRAGRFDLKSV----TLEELLRYLVYVLEKILQREK------KTGGIEGFTVIFDLKG 72 (158)
T ss_pred hHHHhcCCCC-CCCCCcCEEEEEeccccccCcC----CHHHHHHHHHHHHHHHHHHHh------cCCCeeeEEEEEECCC
Confidence 3566788777 9999999999999999997664 899999999999999887521 2457899999999999
Q ss_pred CCcCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCCchhHHHccCCCCCC
Q 013530 224 VNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQL 303 (441)
Q Consensus 224 ~sl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~L 303 (441)
++++++. .++++.++++++++||++++++||||+|++++++|+++++||++++++||+++++++.+.|.++||+++|
T Consensus 73 ~~~~~~~---~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~l 149 (158)
T smart00516 73 LSMSNPD---LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQL 149 (158)
T ss_pred CCccccc---HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhC
Confidence 9999965 7899999999999999999999999999999999999999999999999999987678999999999999
Q ss_pred CccCCCCCC
Q 013530 304 PDFLGGTCS 312 (441)
Q Consensus 304 P~~yGGt~~ 312 (441)
|.+|||++.
T Consensus 150 P~~~GG~~~ 158 (158)
T smart00516 150 PEELGGTLD 158 (158)
T ss_pred cHhhCCCCC
Confidence 999999974
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.93 E-value=1.3e-25 Score=198.79 Aligned_cols=144 Identities=40% Similarity=0.611 Sum_probs=129.3
Q ss_pred cccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCCCCcCCcchhH
Q 013530 154 HGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVA 233 (441)
Q Consensus 154 hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G~sl~~~~~~~ 233 (441)
.|.|++||||++++++..++... .+.+++++++++.+|.++..... ...|+++|+|++|++++++. ..
T Consensus 14 ~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~~--------~~~~~~~i~D~~~~~~~~~~-~~ 81 (157)
T cd00170 14 GGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQEDDE--------QVEGFVVIIDLKGLSLSHLL-PD 81 (157)
T ss_pred CCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhhhh--------cccceEEEEECCCCChhccc-hh
Confidence 35799999999999997666554 24589999999999999886432 23799999999999999986 56
Q ss_pred HHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCCchhHHHccCCCCCCCccCCCC
Q 013530 234 HDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDFLGGT 310 (441)
Q Consensus 234 ~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~LP~~yGGt 310 (441)
.+.++.++++++++||++++++||||+|++|+++|+++++|+++++++||++++++ .+.|.++|++++||.+|||+
T Consensus 82 ~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 82 PSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred HHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 89999999999999999999999999999999999999999999999999999865 79999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.47 E-value=2.2e-14 Score=128.39 Aligned_cols=139 Identities=24% Similarity=0.346 Sum_probs=94.8
Q ss_pred cccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCCCCcCCcchhH
Q 013530 154 HGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVA 233 (441)
Q Consensus 154 hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G~sl~~~~~~~ 233 (441)
.|+|++||||+++....+ ++. .+.+.++.|++..++..+ ...+.++|+|+.|++..+.. .
T Consensus 7 gG~d~~g~pV~~~~~~~~-~~~----~~~~~ll~yl~~~l~~~~-------------~~~~f~vVid~~~~~~~~~~--~ 66 (149)
T PF13716_consen 7 GGRDREGRPVVVFIASRL-PSS----DDLERLLLYLLSTLSEEV-------------VDKPFSVVIDHTGFSRSSEP--S 66 (149)
T ss_dssp EEEBTTS-EEEEEEGGG--C-T----THHHHHHHHHHHHH-TTT-------------TTS-EEEEEE-TT--GGG-----
T ss_pred cccCCCcCEEEEEECCcC-cch----hhHHHHHHHHHHhhhHHh-------------cCCCEEEEEEcCCCccccCC--c
Confidence 389999999999998877 433 266777777665552211 12469999999999885543 3
Q ss_pred HHHHHHHHHHhcccccccccEEEEEecChHHHHHH-HHHhhcCCHhh-hcceEEecCCchhHHHccCCCCCCCccCCCCC
Q 013530 234 HDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVW-NTAKGFLDPKT-TAKIQVLGYKFHDKLLEVIDSSQLPDFLGGTC 311 (441)
Q Consensus 234 ~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw-~lVKpfL~~kt-~~KI~~lg~~~~~~L~e~Id~~~LP~~yGGt~ 311 (441)
...++.+.+.+...|+..|+++||||++++++.++ .+.+++++.+. ..||.++. ..++|.++||+++||..+||+.
T Consensus 67 ~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~--sl~~L~~~i~~~qL~~~lp~~~ 144 (149)
T PF13716_consen 67 LSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVS--SLSELSKHIDPSQLPESLPGVL 144 (149)
T ss_dssp HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEES--STCGGGGTSGGGG------HHH
T ss_pred hHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEEC--CHHHHHhhCCHHHhcccCCCEE
Confidence 68899999999999999999999999999999999 55677778888 89999995 4799999999999999999987
Q ss_pred CCC
Q 013530 312 SCP 314 (441)
Q Consensus 312 ~~~ 314 (441)
...
T Consensus 145 ~~d 147 (149)
T PF13716_consen 145 QYD 147 (149)
T ss_dssp ---
T ss_pred ecC
Confidence 653
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.71 E-value=2.3e-08 Score=74.73 Aligned_cols=47 Identities=38% Similarity=0.646 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhC--------CCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013530 74 EKAVNGFRNALIAR--------DMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEM 121 (441)
Q Consensus 74 ~~~V~elR~~L~~~--------~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 121 (441)
+++|++|++.|... +.....++| .+||||||||+||+++|.+||.++
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDD-NFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SH-HHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCH-HHHHHHHHHccCCHHHHHHHHHhC
Confidence 46899999999873 345566777 599999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.17 E-value=8.3e-06 Score=83.07 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=98.6
Q ss_pred ccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCCCCcCCcchhHH
Q 013530 155 GVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAH 234 (441)
Q Consensus 155 G~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G~sl~~~~~~~~ 234 (441)
|.|+.||+|+++...++-+..-. .--++++|.++.+++.++.. .+.+.=-.|+...+.+ .+
T Consensus 88 ~~D~~gr~iivv~a~rlp~~~el---d~~~li~~~v~~id~~Ve~D--------------Yt~vYfh~gl~s~nkp--~l 148 (467)
T KOG4406|consen 88 AKDKQGRKIIVVYACRLPSSSEL---DDIRLISYLVYTIDKYVEND--------------YTLVYFHHGLPSDNKP--YL 148 (467)
T ss_pred cccccCCeeEEEEEecCCchhhh---hhHHHHHHHHHHHHHHHhcc--------------ceeeehhcCCcccccc--hH
Confidence 36999999999988887655421 22238999999999988763 4445555566555544 35
Q ss_pred HHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCCchhHHHccCCCCC
Q 013530 235 DLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQ 302 (441)
Q Consensus 235 ~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~ 302 (441)
.++....+-+..+|---++.+|+|.+-|+.+++|+++|||++.|...||+-+ ++.++|.++|.-++
T Consensus 149 ~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~--n~lseL~~~l~l~r 214 (467)
T KOG4406|consen 149 QLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYF--NSLSELFEALKLNR 214 (467)
T ss_pred HHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEe--ehHHHHHHhhhhhh
Confidence 6666666666677889999999999999999999999999999999999999 56889998877443
No 9
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=67.64 E-value=16 Score=25.49 Aligned_cols=36 Identities=17% Similarity=0.446 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 013530 75 KAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWV 119 (441)
Q Consensus 75 ~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 119 (441)
+.|.+|...... ++ .....||.+.+||++.|+..+-
T Consensus 2 e~i~~F~~iTg~--------~~-~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITGA--------DE-DVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH-S--------SH-HHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHCc--------CH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 567788777621 33 5899999999999999998764
No 10
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=67.35 E-value=17 Score=25.17 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 013530 75 KAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVE 120 (441)
Q Consensus 75 ~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 120 (441)
+.|+.|++.+ |. .+. ..+..-|.++++|++.|+.+|.+
T Consensus 3 ~~v~~L~~mF------P~-~~~-~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMF------PD-LDR-EVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHS------SS-S-H-HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566666665 33 334 48999999999999999998864
No 11
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=60.26 E-value=24 Score=24.50 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 013530 75 KAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVE 120 (441)
Q Consensus 75 ~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 120 (441)
+.++.|++.+ |. .++ ..+.+.|+++++|++.|+..|.+
T Consensus 4 ~~v~~L~~mF------P~-l~~-~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMF------PN-LDE-EVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 3566666554 43 344 48899999999999999988753
No 12
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.21 E-value=65 Score=25.37 Aligned_cols=56 Identities=18% Similarity=0.412 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhc---CCCHHHHHHHHHHHHHHH
Q 013530 70 DAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKAR---KFDIDKTFQMWVEMLNWR 125 (441)
Q Consensus 70 d~~E~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrAr---kfDvekA~~~l~~~l~WR 125 (441)
+++....+.+|-+..-.+...|...+|++.+-+||... -|++.--=+.|++|+.|-
T Consensus 14 ~Pk~~d~~~~lAn~af~D~sFPK~t~Df~~is~YLE~~a~f~~~m~~FDeiwe~Yle~~ 72 (74)
T COG4479 14 NPKSKDDKTELANLAFDDHSFPKHTDDFHEISDYLETNADFLFNMSVFDEIWEEYLEHL 72 (74)
T ss_pred CCCCCChHHHHHHHHhhcccCCCCCccHHHHHHHHHhcCCcccchhhHHHHHHHHHHHh
Confidence 33344455666677777777888889999999999864 355555567788888774
No 13
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=32.75 E-value=1.8e+02 Score=22.23 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 013530 73 EEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVE 120 (441)
Q Consensus 73 E~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 120 (441)
-.+.|+.+++... .|.| .-+...|+-++.|...|.++|..
T Consensus 5 ~rk~VQ~iKEiv~-------~hse-~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 5 SRKTVQSIKEIVG-------CHSE-EEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred HHHHHHHHHHHhc-------CCCH-HHHHHHHHHhCCCHHHHHHHHHh
Confidence 3566777777662 3567 48999999999999999999864
No 14
>PRK14136 recX recombination regulator RecX; Provisional
Probab=29.42 E-value=36 Score=34.38 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH
Q 013530 98 HTMLRFLKARKFDIDKTFQMWVE 120 (441)
Q Consensus 98 ~~LLRFLrArkfDvekA~~~l~~ 120 (441)
.-+.|||..+.|+.+...+.|..
T Consensus 279 ~K~iRfL~rRGFS~D~I~~vLk~ 301 (309)
T PRK14136 279 AKQARFLAARGFSSATIVKLLKV 301 (309)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHh
Confidence 56899999999999988877753
No 15
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=25.99 E-value=98 Score=28.70 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=24.3
Q ss_pred CCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013530 90 LPSRHDDYHTMLRFLKARKFDIDKTFQMWVEM 121 (441)
Q Consensus 90 Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 121 (441)
+|....+.+-+.|||..++|+.+-+...|...
T Consensus 133 ~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 133 KPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred cCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34444445789999999999999888877643
No 16
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=25.85 E-value=2.1e+02 Score=22.12 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=31.6
Q ss_pred cEEEEEecCCCCcCCcchhHHHHHHHHHHHhccccc--ccccEEEEEecChHHHHH
Q 013530 214 STITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYP--EILHQMFIVNAGSGFKLV 267 (441)
Q Consensus 214 g~tvIiDl~G~sl~~~~~~~~~llk~i~kilq~~YP--erL~~I~IINaP~~f~~l 267 (441)
+-.+++|+.|+.. +. ..++-.++..+...|| +.-.++.++|+......+
T Consensus 17 ~~~V~lDF~gv~~--~~---ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~ 67 (74)
T PF14213_consen 17 GEKVVLDFEGVES--IT---SSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEM 67 (74)
T ss_pred CCeEEEECCCccc--cc---HHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHH
Confidence 3348999999943 33 3455555555556666 456688899987666443
No 17
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=24.91 E-value=5e+02 Score=27.47 Aligned_cols=89 Identities=12% Similarity=0.187 Sum_probs=64.7
Q ss_pred CCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCCCCcCCcch------
Q 013530 158 KEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGK------ 231 (441)
Q Consensus 158 k~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G~sl~~~~~------ 231 (441)
....|++++..|---- +.+.|++.++.... +. .--++|+.-.|++-..+..
T Consensus 122 ~~~~P~vvilpGltg~-------S~~~YVr~lv~~a~---~~-------------G~r~VVfN~RG~~g~~LtTpr~f~a 178 (409)
T KOG1838|consen 122 DGTDPIVVILPGLTGG-------SHESYVRHLVHEAQ---RK-------------GYRVVVFNHRGLGGSKLTTPRLFTA 178 (409)
T ss_pred CCCCcEEEEecCCCCC-------ChhHHHHHHHHHHH---hC-------------CcEEEEECCCCCCCCccCCCceeec
Confidence 4567999999887543 45788888764332 21 1457888999976554421
Q ss_pred hHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHH
Q 013530 232 VAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTA 271 (441)
Q Consensus 232 ~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lV 271 (441)
....-++.+++.+...||.+ +++.+-.+.+..++||-+
T Consensus 179 g~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nYL 216 (409)
T KOG1838|consen 179 GWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNYL 216 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHHh
Confidence 22566888999999999998 899999999888888765
No 18
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=24.28 E-value=3e+02 Score=22.20 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecC-CCCcCCcchhHHHHHHHHHHHhcccccccccEEEEEe
Q 013530 181 TVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQ-GVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVN 259 (441)
Q Consensus 181 t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~-G~sl~~~~~~~~~llk~i~kilq~~YPerL~~I~IIN 259 (441)
+.+++.. ++..++..+.. -..+.+++|+. ++ ..+. ...+....++... +...+.++=||-
T Consensus 12 t~ed~~~-~~~~~~~~~~~------------~~~~~ll~d~~~~~--~~~~---~~a~~~~~~~~~~-~~~~~~r~AvV~ 72 (109)
T PF11964_consen 12 TEEDYKE-LLPALEELIAD------------HGKIRLLVDLRRDF--EGWS---PEARWEDAKFGLK-HLKHFRRIAVVG 72 (109)
T ss_dssp -HHHHHH-HHHHHHHHHTT------------SSSEEEEEEEC-CE--EEEH---HHHHHHHHHHHCC-CCGGEEEEEEE-
T ss_pred CHHHHHH-HHHHHHHHHhc------------CCceEEEEEecCcc--CCCC---HHHHHHHHHhchh-hhcccCEEEEEE
Confidence 4566666 44455555432 24688899988 65 2233 3334444444445 778899999999
Q ss_pred cChHHHHHHHHHhhc
Q 013530 260 AGSGFKLVWNTAKGF 274 (441)
Q Consensus 260 aP~~f~~lw~lVKpf 274 (441)
.+.+.+.+-+++..|
T Consensus 73 ~~~~~~~~~~~~~~~ 87 (109)
T PF11964_consen 73 DSEWIRMIANFFAAF 87 (109)
T ss_dssp SSCCCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhc
Confidence 999999999998886
No 19
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=23.34 E-value=2.5e+02 Score=29.09 Aligned_cols=86 Identities=12% Similarity=-0.006 Sum_probs=46.8
Q ss_pred ccccccccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCCCCcCC
Q 013530 149 YPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMS 228 (441)
Q Consensus 149 ~p~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G~sl~~ 228 (441)
.||.|.|.|++|++.++...|+-|..-+++=-....|-...+......+.. ... .-.++||++.-+-..
T Consensus 205 ~pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~~----------~~l-~~~vmVDcSH~NS~K 273 (356)
T PRK12822 205 SPHLVTVPGLTGCISTLLSDGNPHGHIILRGGREPNYGLSDVTKASKLLHD----------EGL-NHRLIIDCSHGNSQK 273 (356)
T ss_pred CCCeEEecCCCCcEEEEEcCCCCCceEEEeCCCCCCCCHHHHHHHHHHHHH----------CCC-CCcEEEECCCccCCC
Confidence 567788999999999998888877654443111111222222222222222 122 246899999876543
Q ss_pred cchhHHHHHHHHHHHhc
Q 013530 229 FGKVAHDLVMRIQKIDG 245 (441)
Q Consensus 229 ~~~~~~~llk~i~kilq 245 (441)
-...-+.++..++.-+.
T Consensus 274 ~~~~Q~~V~~~v~~q~~ 290 (356)
T PRK12822 274 VAKNQISVARELCDQLK 290 (356)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 22222455555554433
No 20
>COG5177 Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=1.8e+02 Score=31.53 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=23.9
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHhCCCCCC
Q 013530 62 PISIEDVRDAAEEKAVNGFRNALIARDMLPS 92 (441)
Q Consensus 62 ~~~~ed~~d~~E~~~V~elR~~L~~~~~Lp~ 92 (441)
+-.++|+..++|+.++.+||..-+++--+|+
T Consensus 437 ne~f~els~eee~rq~~efr~~eked~efpd 467 (769)
T COG5177 437 NEGFEELSPEEEERQLREFRDMEKEDREFPD 467 (769)
T ss_pred cccchhcChHHHHHHHHHHHhhhhhhccCch
Confidence 3457888889999999999998876544443
No 21
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=21.56 E-value=2.2e+02 Score=29.40 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=39.6
Q ss_pred cccccccccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCCCCc
Q 013530 148 CYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNW 226 (441)
Q Consensus 148 ~~p~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G~sl 226 (441)
-+||.|.|.+++|++.++...|+-|.--+++=.....|-+..+......++. .+.. -.+|+|++.-+-
T Consensus 199 ~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~pNy~~~di~~~~~~l~~----------~~lp-~~vmVD~SH~ns 266 (344)
T TIGR00034 199 AAPHYFLSVTKDGQMAIVQTSGNPDGHIILRGGKKPNYSAADVAAAKKQLEK----------AGLP-PHLMIDFSHGNS 266 (344)
T ss_pred hCCceeeecCCCCcEEEEECCCCCCEEEEecCCCCCCCCHHHHHHHHHHHHH----------cCCC-CeEEEeCCCccc
Confidence 4677888999999999998888866433222111123333333333333332 1222 458999998654
No 22
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=20.86 E-value=1.5e+02 Score=25.78 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=34.2
Q ss_pred EEEEEecChHHHHHHHHH-----hhcCCHhhhcceEEecCCchhHHHccC
Q 013530 254 QMFIVNAGSGFKLVWNTA-----KGFLDPKTTAKIQVLGYKFHDKLLEVI 298 (441)
Q Consensus 254 ~I~IINaP~~f~~lw~lV-----KpfL~~kt~~KI~~lg~~~~~~L~e~I 298 (441)
-++++|..-++.-++..+ ..|+++.....++++. ..+++.++|
T Consensus 86 Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d--~~~e~~~~i 133 (133)
T PF03641_consen 86 PIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVD--DPEEALEYI 133 (133)
T ss_dssp EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEES--SHHHHHHHH
T ss_pred CEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeC--CHHHHHhhC
Confidence 699999876777777776 6899999999999994 467776654
No 23
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=20.19 E-value=5.2e+02 Score=26.77 Aligned_cols=67 Identities=16% Similarity=0.282 Sum_probs=39.5
Q ss_pred ccccccccCCCCCeEEEEEcCcCCCcCccccc-cHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCCCCc
Q 013530 149 YPHGYHGVDKEGRPVYIERLGQIDPSKLMSCT-TVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNW 226 (441)
Q Consensus 149 ~p~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~-t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G~sl 226 (441)
.||.|.|.|++|++-++.--|+-|.--+++=. +...|-+..+......+... .. ..-+|+|++.-+-
T Consensus 205 ~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~~pNy~~~~i~~~~~~l~k~----------~l-~~~v~VD~SH~ns 272 (349)
T PRK09261 205 APHHFLGITKDGRSAIVSTTGNPDCHVILRGGNKGPNYDAESVAEAKERLEKA----------GL-PPRIMIDCSHANS 272 (349)
T ss_pred CCceeeecCCCCcEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHc----------CC-CCCEEEECCCccc
Confidence 46667899999999999888887654333211 22333333433333332221 11 4678999998653
Done!