Query 013530
Match_columns 441
No_of_seqs 292 out of 1516
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 1.2E-57 4.2E-62 456.9 18.6 275 60-338 27-308 (320)
2 1aua_A Phosphatidylinositol tr 100.0 1.5E-56 5E-61 443.4 21.2 267 65-335 23-290 (296)
3 1olm_A SEC14-like protein 2; l 100.0 3.4E-48 1.2E-52 399.3 22.9 245 64-315 4-249 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 4.8E-46 1.6E-50 372.2 20.3 235 64-314 47-295 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 5.2E-46 1.8E-50 360.4 18.5 228 70-313 5-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.2 1.7E-11 5.7E-16 118.7 8.8 139 140-303 5-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.0 4.5E-10 1.5E-14 110.4 6.2 126 155-302 36-162 (290)
8 1wgl_A TOLL-interacting protei 69.6 5.1 0.00017 29.3 4.0 39 74-120 10-48 (59)
9 2dhy_A CUE domain-containing p 63.1 8.3 0.00028 29.0 4.1 42 72-121 17-58 (67)
10 2dam_A ETEA protein; KIAA0887, 58.3 29 0.00099 25.8 6.4 42 70-119 15-56 (67)
11 1ufz_A Hypothetical protein BA 44.7 38 0.0013 26.4 5.2 41 74-121 35-75 (83)
12 1otr_A Protein CUE2; protein-p 44.7 26 0.00088 24.6 3.9 25 97-121 20-44 (49)
13 3e21_A HFAF1, FAS-associated f 44.0 58 0.002 22.3 5.6 37 73-117 5-41 (45)
14 1v92_A NSFL1 cofactor P47; 3-h 42.2 43 0.0015 22.4 4.7 37 73-118 5-41 (46)
15 2dal_A Protein KIAA0794; FAS a 40.7 65 0.0022 23.4 5.8 40 70-118 12-51 (62)
16 2di0_A Activating signal coint 37.9 69 0.0024 24.2 5.6 43 70-120 10-52 (71)
17 2dah_A Ubiquilin-3; UBA domain 37.6 90 0.0031 22.0 6.0 27 95-121 22-48 (54)
18 1wr1_B Ubiquitin-like protein 32.2 1.1E+02 0.0038 21.9 5.8 25 96-120 31-55 (58)
19 2dna_A Unnamed protein product 31.2 1.2E+02 0.0043 22.5 6.0 26 95-120 32-57 (67)
20 1vej_A Riken cDNA 4931431F19; 31.0 1E+02 0.0035 23.3 5.7 37 74-119 30-66 (74)
21 1q02_A Sequestosome 1; helical 29.8 45 0.0015 23.7 3.1 25 95-119 24-48 (52)
22 1j3a_A 50S ribosomal protein L 25.2 36 0.0012 29.2 2.4 47 217-295 2-48 (142)
23 2kvs_A Uncharacterized protein 24.8 1.9E+02 0.0064 22.3 6.1 39 75-113 20-58 (80)
24 1vq8_J 50S ribosomal protein L 23.9 39 0.0013 29.1 2.4 48 216-295 9-56 (145)
25 1vdl_A Ubiquitin carboxyl-term 23.1 1.4E+02 0.0047 22.8 5.0 38 74-119 25-62 (80)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.2e-57 Score=456.94 Aligned_cols=275 Identities=34% Similarity=0.602 Sum_probs=247.5
Q ss_pred ccccccccCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCcccccch
Q 013530 60 CAPISIEDVRDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVY 139 (441)
Q Consensus 60 ~~~~~~ed~~d~~E~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~ 139 (441)
.++....++ +++|+++|++||+||.+++ ++...|| .+|||||||++||+++|.+||.++++||++++++.+..++.+
T Consensus 27 ~~~g~~~~l-t~~q~~~l~~lR~~l~~~~-~~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~ 103 (320)
T 3q8g_A 27 ALPGTPGNL-TKEQEEALLQFRSILLEKN-YKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYEN 103 (320)
T ss_dssp SCTTSTTCC-CHHHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHH
T ss_pred CCCCCCCCC-CHHHHHHHHHHHHHHHhcC-CCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 344444555 6889999999999999988 4566777 599999999999999999999999999999999988776554
Q ss_pred h------hHhhhhhcccccccccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccC
Q 013530 140 E------EYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHID 213 (441)
Q Consensus 140 ~------el~~v~~~~p~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~ 213 (441)
. +...+.+++++++||+|++||||+|+++|++|++++++.++.+++++++++.+|.+++..+|+|+...+..++
T Consensus 104 ~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve 183 (320)
T 3q8g_A 104 NKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIE 183 (320)
T ss_dssp THHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCC
T ss_pred ccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcc
Confidence 4 3445778899999999999999999999999999887778899999999999999998877888888888899
Q ss_pred cEEEEEecCCCCcCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCCchhH
Q 013530 214 STITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDK 293 (441)
Q Consensus 214 g~tvIiDl~G~sl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~~~~~ 293 (441)
++++|+|++|++++++++. +.+++.+++++|++||++|+++||||+|++|+++|++|++||+++|++||+|+++++.+.
T Consensus 184 ~~~~IiD~~g~sl~~~~~~-~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~ 262 (320)
T 3q8g_A 184 TSCTVLDLKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE 262 (320)
T ss_dssp CEEEEEECTTCCHHHHHHT-HHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHH
T ss_pred eeEEEEECCCCCHHHHHHH-HHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHH
Confidence 9999999999999998753 788999999999999999999999999999999999999999999999999999888899
Q ss_pred HHccCCCCCCCccCCCCCCCCC-CCCcccCCCCCCCChhhhhhhhc
Q 013530 294 LLEVIDSSQLPDFLGGTCSCPN-EGGCLKSNKGPWSDPGIMKLVHA 338 (441)
Q Consensus 294 L~e~Id~~~LP~~yGGt~~~~~-~ggc~~~~~gpw~dp~~~~~~~~ 338 (441)
|.++||+++||++|||+++|.+ +|||+.+|.|||+||++++.-..
T Consensus 263 L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~~~~~ 308 (320)
T 3q8g_A 263 LLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIGPEGE 308 (320)
T ss_dssp HHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCCTTCC
T ss_pred HHhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcCCCCc
Confidence 9999999999999999999987 69999999999999988865433
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.5e-56 Score=443.35 Aligned_cols=267 Identities=38% Similarity=0.645 Sum_probs=243.1
Q ss_pred cccCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCcccccchhhHhh
Q 013530 65 IEDVRDAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDE 144 (441)
Q Consensus 65 ~ed~~d~~E~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~ 144 (441)
..++ +++|+++|++||+||.+++ ++...|| .+|+|||||++||+++|.+||.++++||++++++.+..++.+.+...
T Consensus 23 ~~~l-~~~q~~~l~~lr~~l~~~~-~~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~ 99 (296)
T 1aua_A 23 PGNL-DSAQEKALAELRKLLEDAG-FIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPL 99 (296)
T ss_dssp TTTC-CTTHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHH
T ss_pred CCCC-CHHHHHHHHHHHHHHHhcC-CCCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHH
Confidence 3344 6778999999999999887 4666777 59999999999999999999999999999999988877665444455
Q ss_pred hhhcccccccccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCCC
Q 013530 145 VQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGV 224 (441)
Q Consensus 145 v~~~~p~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G~ 224 (441)
+.+++++++||+|++||||+|+++|++|++++.+..+.+++++++++.+|.++...+|+|+...+.+++++++|+|++|+
T Consensus 100 ~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~ 179 (296)
T 1aua_A 100 IAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGI 179 (296)
T ss_dssp HGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTC
T ss_pred HHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCC
Confidence 67889988999999999999999999999988888899999999999999999888888988777889999999999999
Q ss_pred CcCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCCchhHHHccCCCCCCC
Q 013530 225 NWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLP 304 (441)
Q Consensus 225 sl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~LP 304 (441)
+++|++.. +.+++.+++++|++||++|+++||||+|++|+++|++|||||+++|++||+|+++++.+.|.++||+++||
T Consensus 180 s~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP 258 (296)
T 1aua_A 180 SISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLP 258 (296)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSB
T ss_pred CHHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCc
Confidence 99998754 78999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred ccCCCCCCCCC-CCCcccCCCCCCCChhhhhh
Q 013530 305 DFLGGTCSCPN-EGGCLKSNKGPWSDPGIMKL 335 (441)
Q Consensus 305 ~~yGGt~~~~~-~ggc~~~~~gpw~dp~~~~~ 335 (441)
++|||+++|.+ +|||+.++.|||++|++++.
T Consensus 259 ~~yGG~~~~~~~~~g~~~~~~~~w~~~~~~~~ 290 (296)
T 1aua_A 259 VKFGGKSEVDESKGGLYLSDIGPWRDPKYIGP 290 (296)
T ss_dssp GGGTSCBCCCGGGCCSTTCCCSGGGCGGGCCT
T ss_pred HHhCCCCCCCCCCCCceeCCCCCCCChhhccc
Confidence 99999999986 68999999999999988753
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=3.4e-48 Score=399.31 Aligned_cols=245 Identities=28% Similarity=0.453 Sum_probs=217.2
Q ss_pred ccccCCCHHHHHHHHHHHHHHHhCC-CCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCcccccchhhH
Q 013530 64 SIEDVRDAAEEKAVNGFRNALIARD-MLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEY 142 (441)
Q Consensus 64 ~~ed~~d~~E~~~V~elR~~L~~~~-~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el 142 (441)
.+.++ +++|+++|++||++|.+.. ++| ..+| .+|||||||++||+++|.+||.++++||++++++.+... ..++
T Consensus 4 ~~~~l-~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~~~- 78 (403)
T 1olm_A 4 RVGDL-SPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-QPPE- 78 (403)
T ss_dssp BTTBC-CHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-CCCH-
T ss_pred CccCC-CHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-CCHH-
Confidence 34444 6889999999999998873 455 4667 599999999999999999999999999999999887653 2222
Q ss_pred hhhhhcccccccccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecC
Q 013530 143 DEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQ 222 (441)
Q Consensus 143 ~~v~~~~p~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~ 222 (441)
.+.+++++++||+|++||||+|+++|++|++++++..+.+++++++++.+|.+++.+ +.|+...+.+++++++|+|++
T Consensus 79 -~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~-~~~s~~~g~~v~~~~~I~D~~ 156 (403)
T 1olm_A 79 -VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQEC-AHQTTKLGRKVETITIIYDCE 156 (403)
T ss_dssp -HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCCCCEEEEEECT
T ss_pred -HHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHH-HhhHHhhCCcccceEEEEECC
Confidence 356678888999999999999999999999988777899999999999999998875 334444556789999999999
Q ss_pred CCCcCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCCchhHHHccCCCCC
Q 013530 223 GVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQ 302 (441)
Q Consensus 223 G~sl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~ 302 (441)
|++++++++..+++++.+++++|++||++|+++||||+|++|.++|++|||||+++|++||+|+++++.+.|.++||+++
T Consensus 157 g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~ 236 (403)
T 1olm_A 157 GLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQ 236 (403)
T ss_dssp TCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGG
T ss_pred CCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhh
Confidence 99999998878899999999999999999999999999999999999999999999999999998877889999999999
Q ss_pred CCccCCCCCCCCC
Q 013530 303 LPDFLGGTCSCPN 315 (441)
Q Consensus 303 LP~~yGGt~~~~~ 315 (441)
||++|||++++++
T Consensus 237 LP~~yGG~~~~~~ 249 (403)
T 1olm_A 237 VPVEYGGTMTDPD 249 (403)
T ss_dssp SBGGGTSSBCCTT
T ss_pred CchhhCCCcCCCC
Confidence 9999999998854
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=4.8e-46 Score=372.17 Aligned_cols=235 Identities=20% Similarity=0.338 Sum_probs=199.1
Q ss_pred ccccCCC--HHHHHHHHHHHHHHHhCCCCC-----------CCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCC
Q 013530 64 SIEDVRD--AAEEKAVNGFRNALIARDMLP-----------SRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGV 130 (441)
Q Consensus 64 ~~ed~~d--~~E~~~V~elR~~L~~~~~Lp-----------~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~ 130 (441)
..+++++ +..+++|++||+||.++++++ .+.|| .+|+|||||++||+++|.+||.++++||++++.
T Consensus 47 a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~ 125 (316)
T 3hx3_A 47 AKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQYPE 125 (316)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCch
Confidence 3445553 334789999999999998874 34566 599999999999999999999999999999973
Q ss_pred CCcccccchhhHhh-hhhcccccccccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhc
Q 013530 131 DTIMQDFVYEEYDE-VQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAK 209 (441)
Q Consensus 131 d~i~~d~~~~el~~-v~~~~p~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~ 209 (441)
+..+..+.++.. +...++.+++|+|++||||+|+++|++|++++ +.+++++++++.+|.++... .
T Consensus 126 --~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~----~~~~~~r~~~~~lE~~l~~~--------~ 191 (316)
T 3hx3_A 126 --LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI----TFDEILQAYCFILEKLLENE--------E 191 (316)
T ss_dssp --GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTS----CHHHHHHHHHHHHHHHTTSH--------H
T ss_pred --hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCC----CHHHHHHHHHHHHHHHHhcc--------c
Confidence 333444444443 33456677889999999999999999999885 88999999999999988642 3
Q ss_pred CccCcEEEEEecCCCCcCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCC
Q 013530 210 RHIDSTITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYK 289 (441)
Q Consensus 210 ~~i~g~tvIiDl~G~sl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~ 289 (441)
.++.|+++|+|++|++++|+.+..+..++.+++++|++||++|+++||||+|++|.++|+++||||+++|++||+|++++
T Consensus 192 ~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~ 271 (316)
T 3hx3_A 192 TQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDD 271 (316)
T ss_dssp HHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETC
T ss_pred CCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCC
Confidence 46889999999999999998665578899999999999999999999999999999999999999999999999999876
Q ss_pred chhHHHccCCCCCCCccCCCCCCCC
Q 013530 290 FHDKLLEVIDSSQLPDFLGGTCSCP 314 (441)
Q Consensus 290 ~~~~L~e~Id~~~LP~~yGGt~~~~ 314 (441)
+ +.|.++||+++||++|||++++.
T Consensus 272 ~-~~L~~~I~~~~LP~eyGG~~~~~ 295 (316)
T 3hx3_A 272 L-SGFYQEIDENILPSDFGGTLPKY 295 (316)
T ss_dssp C-HHHHHHSCGGGSBGGGTSSBCCC
T ss_pred H-HHHHhhCCHhhCcHhhCCCCCCc
Confidence 4 79999999999999999999864
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=5.2e-46 Score=360.37 Aligned_cols=228 Identities=21% Similarity=0.340 Sum_probs=193.9
Q ss_pred CHHHHHHHHHHHHHHHhCC--CCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCcccccchhhHhh-hh
Q 013530 70 DAAEEKAVNGFRNALIARD--MLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEMLNWRKENGVDTIMQDFVYEEYDE-VQ 146 (441)
Q Consensus 70 d~~E~~~V~elR~~L~~~~--~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~-v~ 146 (441)
++.|+++|++||+++.+.+ ++|...+| .+|+|||||++||+++|.+||.++++||++++. +..+..+.++.. +.
T Consensus 5 s~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~~ 81 (262)
T 1r5l_A 5 SPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLLK 81 (262)
T ss_dssp ----CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHHH
Confidence 4678889999999999875 45667777 599999999999999999999999999999862 323333333322 23
Q ss_pred hcccccccccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCCCCc
Q 013530 147 SCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNW 226 (441)
Q Consensus 147 ~~~p~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G~sl 226 (441)
..+..+++|+|++||||+|+++|++|++++ +.+++++++++.+|.++... ..++.|+++|+|++|+++
T Consensus 82 ~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~----~~~~~~r~~~~~~E~~~~~~--------~~~~~g~~~I~D~~g~s~ 149 (262)
T 1r5l_A 82 AGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYDVFRVSLITSELIVQEV--------ETQRNGIKAIFDLEGWQF 149 (262)
T ss_dssp TTCEEECSSCCTTCCEEEEEEGGGCCTTTS----CHHHHHHHHHHHHHHHTTSH--------HHHHHCEEEEEECTTCCH
T ss_pred cCCccCCCCcCCCCCEEEEEeccccCcccC----CHHHHHHHHHHHHHHHHhCh--------hhcccceEEEEECCCCCH
Confidence 344555789999999999999999999875 78899999999999887653 224679999999999999
Q ss_pred CCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCCchhHHHccCCCCCCCcc
Q 013530 227 MSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQLPDF 306 (441)
Q Consensus 227 ~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~LP~~ 306 (441)
+|+++..+.+++.++++++++||++|+++||||+|++|+++|++|+|||+++|++||+|+++++.+.|.++|| ++||++
T Consensus 150 ~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~ 228 (262)
T 1r5l_A 150 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLE 228 (262)
T ss_dssp HHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGG
T ss_pred HHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHh
Confidence 9987666889999999999999999999999999999999999999999999999999998888899999999 999999
Q ss_pred CCCCCCC
Q 013530 307 LGGTCSC 313 (441)
Q Consensus 307 yGGt~~~ 313 (441)
|||++..
T Consensus 229 yGG~~~~ 235 (262)
T 1r5l_A 229 YGGEEFS 235 (262)
T ss_dssp GTCSSCC
T ss_pred hCCCCCC
Confidence 9999754
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.22 E-value=1.7e-11 Score=118.70 Aligned_cols=139 Identities=12% Similarity=0.144 Sum_probs=111.8
Q ss_pred hhHhhhhhcccccccccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEE
Q 013530 140 EEYDEVQSCYPHGYHGVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITIL 219 (441)
Q Consensus 140 ~el~~v~~~~p~~~hG~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIi 219 (441)
.+++...-+|. .|.|++||||+++.+.+++...+ +++.++.|++..++..+. ....+|+
T Consensus 5 ~~i~~~~ify~---~G~d~dGrpViv~~~~~l~~~~~----D~e~Ll~~vl~tl~~~~~--------------~~y~lV~ 63 (256)
T 3pg7_A 5 KALKTLSIFYQ---AGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYYA--------------KPYEIVV 63 (256)
T ss_dssp TTHHHHTSEEE---EEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTTT--------------SCEEEEE
T ss_pred hHHHHcCCEEE---cCcCCCCCEEEEEEeecCCCCCC----CHHHHHHHHHHHHHHhcC--------------CCeEEEE
Confidence 34444444443 38999999999999999988764 788888777776665432 3689999
Q ss_pred ecCCCCcCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHH-HhhcCCHhhhcceEEecCCchhHHHccC
Q 013530 220 DVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNT-AKGFLDPKTTAKIQVLGYKFHDKLLEVI 298 (441)
Q Consensus 220 Dl~G~sl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~l-VKpfL~~kt~~KI~~lg~~~~~~L~e~I 298 (441)
|+.|++..+.+. ..+++.+.+++...|...|+++||+|++++|+..|+. .++|.+.+..+|+++++ ..++|.++|
T Consensus 64 d~T~~~~~n~p~--~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~--sl~eL~~~i 139 (256)
T 3pg7_A 64 DLTHTGPSNRFK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFID--CPGKLAEHI 139 (256)
T ss_dssp ECTTCCGGGCCC--HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEES--STTGGGGTS
T ss_pred ECCCCCcccCCc--HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEEC--CHHHHHhhc
Confidence 999999877653 7899999999999999999999999999999976655 56666668889999995 478999999
Q ss_pred CCCCC
Q 013530 299 DSSQL 303 (441)
Q Consensus 299 d~~~L 303 (441)
+.++|
T Consensus 140 ~~~~L 144 (256)
T 3pg7_A 140 EHEQQ 144 (256)
T ss_dssp CGGGC
T ss_pred CHHHc
Confidence 87665
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.97 E-value=4.5e-10 Score=110.40 Aligned_cols=126 Identities=13% Similarity=0.142 Sum_probs=96.9
Q ss_pred ccCCCCCeEEEEEcCcCCCcCccccccHHHHHHHHHHHHHHHHhhccchhhhhhcCccCcEEEEEecCCCCcCCcchhHH
Q 013530 155 GVDKEGRPVYIERLGQIDPSKLMSCTTVERFLKYHVQGFEKTFSEKFPACSIAAKRHIDSTITILDVQGVNWMSFGKVAH 234 (441)
Q Consensus 155 G~Dk~GRPV~i~rlg~~d~~~l~~~~t~e~~lr~~v~~~E~~l~~~~pacs~~~~~~i~g~tvIiDl~G~sl~~~~~~~~ 234 (441)
|.|++||||+++.+++++...+ +++.++-+++..++..+. ....+|+|+.|++..+-+. .
T Consensus 36 g~d~dG~PViv~~~~~~~~~~~----D~e~Lly~il~tl~~~~~--------------~~y~lV~D~T~~~~~n~p~--~ 95 (290)
T 3peg_A 36 GTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHTGPSNRFK--T 95 (290)
T ss_dssp EECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTCCGGGCCC--H
T ss_pred ccCCCCCEEEEEEeecCCccCC----CHHHHHHHHHHHHHHhcC--------------CCeEEEEEcCCCCccCCCh--H
Confidence 7899999999999999997665 777777776666554432 4689999999999876553 7
Q ss_pred HHHHHHHHHhcccccccccEEEEEecChHHHHH-HHHHhhcCCHhhhcceEEecCCchhHHHccCCCCC
Q 013530 235 DLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLV-WNTAKGFLDPKTTAKIQVLGYKFHDKLLEVIDSSQ 302 (441)
Q Consensus 235 ~llk~i~kilq~~YPerL~~I~IINaP~~f~~l-w~lVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~ 302 (441)
++++.+.+++...|+..|+++||+|++.+|+.. |...++|...+..+|+.++.. ...|..++++++
T Consensus 96 ~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~--~~~L~~~i~~~~ 162 (290)
T 3peg_A 96 DFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQ 162 (290)
T ss_dssp HHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS--SCC---------
T ss_pred HHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC--HHHHHhhCCHHH
Confidence 899999999999999999999999999999864 456788888888999999854 355889998775
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=69.63 E-value=5.1 Score=29.34 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 013530 74 EKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVE 120 (441)
Q Consensus 74 ~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 120 (441)
++.|+.|++.+ | ..+. ..+..-|++++.|++.|+.+|.+
T Consensus 10 ee~l~~L~emF------P-~ld~-~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMF------P-NMDQ-EVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHC------S-SSCH-HHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 35667777665 3 3355 48999999999999999999865
No 9
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.07 E-value=8.3 Score=28.96 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013530 72 AEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEM 121 (441)
Q Consensus 72 ~E~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 121 (441)
+..+++++|++.+ | ..|. ..+..-|+++++|++.|++.|.++
T Consensus 17 ~~~~~v~~L~~MF------P-~lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 17 EFNQAMDDFKTMF------P-NMDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CSHHHHHHHHHHC------S-SSCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3456788888776 3 2344 589999999999999999998764
No 10
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.32 E-value=29 Score=25.80 Aligned_cols=42 Identities=10% Similarity=0.155 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 013530 70 DAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWV 119 (441)
Q Consensus 70 d~~E~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 119 (441)
...+.+.|.+|..... ..|......||...+||++.|+..+-
T Consensus 15 s~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 15 TQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4567778999988762 12446889999999999999988764
No 11
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=44.66 E-value=38 Score=26.43 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013530 74 EKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVEM 121 (441)
Q Consensus 74 ~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 121 (441)
..+|+++|..|-. ...| ..|.+-....+||++||...+.+-
T Consensus 35 ~SCLd~iR~VlGd------sV~e-~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLGD------AVPD-DILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTTT------TSCH-HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc------cCCH-HHHHHHHHHhcCCHHHHHHHHHhc
Confidence 4578888888832 2345 488888889999999999988653
No 12
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=44.65 E-value=26 Score=24.59 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH
Q 013530 97 YHTMLRFLKARKFDIDKTFQMWVEM 121 (441)
Q Consensus 97 ~~~LLRFLrArkfDvekA~~~l~~~ 121 (441)
...+.+-|+++++|+++|.++|.+.
T Consensus 20 ~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 20 KSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3488999999999999999998765
No 13
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=43.97 E-value=58 Score=22.30 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHH
Q 013530 73 EEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQM 117 (441)
Q Consensus 73 E~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~ 117 (441)
+.+.|.+|...- ..+|......||.+.+||++.|+..
T Consensus 5 ~de~ia~F~~iT--------G~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACT--------GIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHH--------CCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHH--------CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 456788888754 2355457899999999999999754
No 14
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=42.24 E-value=43 Score=22.36 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHH
Q 013530 73 EEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMW 118 (441)
Q Consensus 73 E~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 118 (441)
+.+.|.+|...- + .+. .....||.+.+||++.|+..+
T Consensus 5 ~~~~i~~F~~iT---g-----~~~-~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVT---G-----AEE-DRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHT---C-----CCH-HHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHh---C-----cCH-HHHHHHHHHcCCCHHHHHHHH
Confidence 456778877653 1 133 589999999999999998776
No 15
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.73 E-value=65 Score=23.35 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHH
Q 013530 70 DAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMW 118 (441)
Q Consensus 70 d~~E~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 118 (441)
...+.+.|.+|..... .+. .....||.+.+||++.|+..+
T Consensus 12 s~~~~e~i~qF~~iTg--------~~~-~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 12 SSALKGLIQQFTTITG--------ASE-SVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHHHHHTC--------CCH-HHHHHHHHTTTSCHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC--------CCH-HHHHHHHHHcCCCHHHHHHHH
Confidence 3556678888886541 123 588999999999999999876
No 16
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=37.92 E-value=69 Score=24.20 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 013530 70 DAAEEKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWVE 120 (441)
Q Consensus 70 d~~E~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 120 (441)
.++-+..|.++++.+ |+ ..+ .++.+.|..++.|+|.++..|-+
T Consensus 10 ~~~l~s~I~qV~DLf------Pd-LG~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 10 GVELDSLISQVKDLL------PD-LGE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SHHHHHHHHHHHHHC------CS-SCH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc------cc-CCH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 344566777777665 43 355 49999999999999999998854
No 17
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.63 E-value=90 Score=22.03 Aligned_cols=27 Identities=19% Similarity=0.087 Sum_probs=21.6
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013530 95 DDYHTMLRFLKARKFDIDKTFQMWVEM 121 (441)
Q Consensus 95 dD~~~LLRFLrArkfDvekA~~~l~~~ 121 (441)
.|.+..++-|++.++|+++|++.|-..
T Consensus 22 ~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 22 LNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 343456999999999999999987653
No 18
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=32.15 E-value=1.1e+02 Score=21.92 Aligned_cols=25 Identities=8% Similarity=0.186 Sum_probs=20.9
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHH
Q 013530 96 DYHTMLRFLKARKFDIDKTFQMWVE 120 (441)
Q Consensus 96 D~~~LLRFLrArkfDvekA~~~l~~ 120 (441)
|.+..++-|++.++|+++|++.|..
T Consensus 31 d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 31 DFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4357799999999999999988754
No 19
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.21 E-value=1.2e+02 Score=22.48 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=21.3
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHH
Q 013530 95 DDYHTMLRFLKARKFDIDKTFQMWVE 120 (441)
Q Consensus 95 dD~~~LLRFLrArkfDvekA~~~l~~ 120 (441)
.|...-++-|++.+.|+++|++.|..
T Consensus 32 ~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 32 VNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34456799999999999999987754
No 20
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.97 E-value=1e+02 Score=23.34 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 013530 74 EKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWV 119 (441)
Q Consensus 74 ~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 119 (441)
+.+|++|++. + ..|.+..++-|++.++|+++|++.|.
T Consensus 30 e~qi~qL~eM----G-----F~dr~~~~~AL~~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 30 QQELEELKAL----G-----FANRDANLQALVATDGDIHAAIEMLL 66 (74)
T ss_dssp HHHHHHHHHH----T-----CCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHc----C-----CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3456665554 2 23335779999999999999998775
No 21
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=29.83 E-value=45 Score=23.67 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=21.2
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHH
Q 013530 95 DDYHTMLRFLKARKFDIDKTFQMWV 119 (441)
Q Consensus 95 dD~~~LLRFLrArkfDvekA~~~l~ 119 (441)
++-.+|-|.|.+.++|+.+|.+.+.
T Consensus 24 negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 24 DEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp CTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred ccccHHHHHHHHccCCHHHHHHHhh
Confidence 3336999999999999999998774
No 22
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=25.21 E-value=36 Score=29.25 Aligned_cols=47 Identities=21% Similarity=0.149 Sum_probs=31.2
Q ss_pred EEEecCCCCcCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCCchhHHH
Q 013530 217 TILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLL 295 (441)
Q Consensus 217 vIiDl~G~sl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~~~~~L~ 295 (441)
+|||.+|..+..+. ..+.+++. .=..|.|||| +||.+-|+++...+.
T Consensus 2 ~viDA~g~~LGRLA-------s~vAk~L~-----~Gd~VVViNa--------------------eki~iTG~k~~~K~y 48 (142)
T 1j3a_A 2 RIINADGLILGRLA-------SRVAKMLL-----EGEEVVIVNA--------------------EKAVITGNREVIFSK 48 (142)
T ss_dssp EEEECTTBBHHHHH-------HHHHHHHH-----TTCCEEEECG--------------------GGCEEESCHHHHHHH
T ss_pred EEEeCCCCchHHHH-------HHHHHHHh-----cCCEEEEEeC--------------------eeeEecccHHhheee
Confidence 58999997665443 22333333 4567999998 799999987654443
No 23
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=24.82 E-value=1.9e+02 Score=22.35 Aligned_cols=39 Identities=5% Similarity=0.088 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHH
Q 013530 75 KAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDK 113 (441)
Q Consensus 75 ~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvek 113 (441)
.-+.+|-+++..+...|...+|+..|.+||....+|-+.
T Consensus 20 dp~g~LA~~i~~D~~FPK~~~d~~eIs~Yle~~~~~~~~ 58 (80)
T 2kvs_A 20 TPFGILAEHVSEDKAFPRLEERHQVIRAYVMSNYTDHQL 58 (80)
T ss_dssp CHHHHHHHHHHTSCCCCSSCSSSHHHHHHHHHHCCCHHH
T ss_pred ChHHHHHHHHhhCcCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 357888899988888998889999999999998877543
No 24
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=23.94 E-value=39 Score=29.13 Aligned_cols=48 Identities=13% Similarity=-0.008 Sum_probs=31.9
Q ss_pred EEEEecCCCCcCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHhhcCCHhhhcceEEecCCchhHHH
Q 013530 216 ITILDVQGVNWMSFGKVAHDLVMRIQKIDGDNYPEILHQMFIVNAGSGFKLVWNTAKGFLDPKTTAKIQVLGYKFHDKLL 295 (441)
Q Consensus 216 tvIiDl~G~sl~~~~~~~~~llk~i~kilq~~YPerL~~I~IINaP~~f~~lw~lVKpfL~~kt~~KI~~lg~~~~~~L~ 295 (441)
-+|||.+|..+..+. ..+.+++. .=..|.|||| +||.+-|+++...+.
T Consensus 9 w~viDA~g~~LGRLA-------s~vAk~L~-----~Gd~VVViNa--------------------eki~iTG~k~~~K~y 56 (145)
T 1vq8_J 9 DVIVDARDCIMGRVA-------SQVAEQAL-----DGETVAVVNA--------------------ERAVITGREEQIVEK 56 (145)
T ss_dssp SEEEECTTBBHHHHH-------HHHHHHHH-----TTCCEEEECG--------------------GGCEEESCHHHHHHH
T ss_pred EEEEeCCCCchHHHH-------HHHHHHHh-----cCCEEEEEeC--------------------EeeEecchhhhheee
Confidence 368999997665443 22333333 4567999998 799999987655443
No 25
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.14 E-value=1.4e+02 Score=22.80 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 013530 74 EKAVNGFRNALIARDMLPSRHDDYHTMLRFLKARKFDIDKTFQMWV 119 (441)
Q Consensus 74 ~~~V~elR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 119 (441)
...|.+||+.- ..+|..+|.--|.|.+.|+..|+.+|.
T Consensus 25 q~lLnQLrEIT--------GiqD~~~L~~ALkas~Gdl~~AV~~LT 62 (80)
T 1vdl_A 25 QTFLNQLREIT--------GINDAQILQQALKDSNGNLELAVAFLT 62 (80)
T ss_dssp HHHHHHHHHHS--------CCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHh--------CCCcHHHHHHHHHhccCCHHHHHHHHh
Confidence 44677777763 346778999999999999999999885
Done!