Query 013531
Match_columns 441
No_of_seqs 186 out of 254
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 04:47:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11637 AmiB activator; Provi 98.7 9.9E-06 2.1E-10 85.1 25.1 58 125-182 172-229 (428)
2 PRK09039 hypothetical protein; 98.5 2.1E-05 4.6E-10 80.9 21.6 162 4-185 24-185 (343)
3 PF12718 Tropomyosin_1: Tropom 98.2 0.00037 8E-09 63.5 19.2 132 43-181 5-138 (143)
4 COG3883 Uncharacterized protei 98.1 0.00063 1.4E-08 67.8 21.5 138 45-182 45-207 (265)
5 PRK11637 AmiB activator; Provi 98.0 0.0013 2.8E-08 69.2 22.4 59 124-182 185-243 (428)
6 PF12718 Tropomyosin_1: Tropom 97.8 0.0032 6.8E-08 57.5 19.1 16 49-64 4-19 (143)
7 TIGR02169 SMC_prok_A chromosom 97.8 0.0028 6.1E-08 73.1 22.8 31 118-148 800-830 (1164)
8 TIGR02169 SMC_prok_A chromosom 97.8 0.0041 8.9E-08 71.7 23.0 26 45-70 294-319 (1164)
9 COG1579 Zn-ribbon protein, pos 97.7 0.013 2.9E-07 57.8 21.6 95 117-219 90-184 (239)
10 COG4942 Membrane-bound metallo 97.6 0.0094 2E-07 63.0 21.4 133 50-182 57-220 (420)
11 TIGR02168 SMC_prok_B chromosom 97.6 0.011 2.3E-07 68.0 22.6 13 46-58 699-711 (1179)
12 COG1579 Zn-ribbon protein, pos 97.5 0.017 3.7E-07 57.1 20.2 110 78-188 36-147 (239)
13 PF09726 Macoilin: Transmembra 97.5 0.027 5.9E-07 63.3 24.3 140 42-182 457-611 (697)
14 PRK09039 hypothetical protein; 97.4 0.041 8.8E-07 56.9 22.5 14 45-58 53-66 (343)
15 COG3883 Uncharacterized protei 97.4 0.088 1.9E-06 52.8 23.4 136 45-182 38-193 (265)
16 PHA02562 46 endonuclease subun 97.4 0.027 5.8E-07 60.6 21.4 50 50-99 232-281 (562)
17 PRK02224 chromosome segregatio 97.3 0.025 5.4E-07 64.4 21.9 48 132-179 594-641 (880)
18 PF08614 ATG16: Autophagy prot 97.3 0.0046 9.9E-08 58.7 12.9 112 42-168 71-182 (194)
19 COG1196 Smc Chromosome segrega 97.2 0.049 1.1E-06 64.4 22.6 19 50-68 693-711 (1163)
20 COG1196 Smc Chromosome segrega 97.2 0.053 1.2E-06 64.1 22.5 9 368-376 1021-1029(1163)
21 KOG0243 Kinesin-like protein [ 97.2 0.43 9.4E-06 55.5 28.8 63 323-388 638-700 (1041)
22 TIGR01843 type_I_hlyD type I s 97.1 0.23 5E-06 51.0 24.4 30 41-70 77-106 (423)
23 PF00261 Tropomyosin: Tropomyo 97.1 0.047 1E-06 53.4 18.3 103 54-157 3-105 (237)
24 PF00261 Tropomyosin: Tropomyo 97.1 0.069 1.5E-06 52.2 19.3 77 50-134 83-159 (237)
25 KOG0933 Structural maintenance 97.1 0.91 2E-05 52.7 30.4 36 53-88 742-777 (1174)
26 PHA02562 46 endonuclease subun 97.1 0.032 7E-07 60.0 18.4 19 44-62 180-198 (562)
27 PRK02224 chromosome segregatio 97.1 0.054 1.2E-06 61.7 21.0 8 224-231 452-459 (880)
28 PF07888 CALCOCO1: Calcium bin 97.0 0.13 2.8E-06 56.2 22.2 79 50-136 162-240 (546)
29 PRK03918 chromosome segregatio 97.0 0.22 4.8E-06 56.6 24.6 18 50-67 530-547 (880)
30 KOG0250 DNA repair protein RAD 97.0 0.06 1.3E-06 62.3 19.6 132 51-182 294-432 (1074)
31 KOG0250 DNA repair protein RAD 96.9 0.3 6.5E-06 56.8 24.6 59 124-182 366-425 (1074)
32 PF15619 Lebercilin: Ciliary p 96.9 0.25 5.3E-06 47.5 20.4 130 44-182 11-149 (194)
33 PF08317 Spc7: Spc7 kinetochor 96.9 0.089 1.9E-06 53.8 18.6 117 55-182 152-268 (325)
34 PF04156 IncA: IncA protein; 96.8 0.098 2.1E-06 48.9 16.8 24 113-136 127-150 (191)
35 PRK04863 mukB cell division pr 96.8 0.53 1.2E-05 57.3 26.5 132 46-177 280-416 (1486)
36 PF05911 DUF869: Plant protein 96.7 0.052 1.1E-06 61.6 16.9 107 41-148 585-691 (769)
37 PRK03918 chromosome segregatio 96.7 0.25 5.3E-06 56.2 22.3 13 224-236 436-448 (880)
38 TIGR00606 rad50 rad50. This fa 96.6 2.1 4.6E-05 51.6 30.4 51 50-100 417-467 (1311)
39 smart00787 Spc7 Spc7 kinetocho 96.6 0.17 3.6E-06 51.9 18.3 112 56-182 148-263 (312)
40 TIGR01843 type_I_hlyD type I s 96.6 0.25 5.4E-06 50.7 19.5 6 230-235 297-302 (423)
41 PF12128 DUF3584: Protein of u 96.6 2.2 4.8E-05 51.0 29.6 35 341-375 980-1014(1201)
42 PF09726 Macoilin: Transmembra 96.5 0.054 1.2E-06 61.0 15.3 104 48-173 541-651 (697)
43 KOG0161 Myosin class II heavy 96.5 0.26 5.7E-06 60.8 22.0 35 148-182 1080-1114(1930)
44 KOG0161 Myosin class II heavy 96.5 0.24 5.3E-06 61.0 21.6 37 49-85 1010-1046(1930)
45 PF08614 ATG16: Autophagy prot 96.5 0.029 6.4E-07 53.2 11.3 59 41-99 77-135 (194)
46 KOG0996 Structural maintenance 96.5 0.44 9.5E-06 55.9 22.3 47 54-100 407-453 (1293)
47 PF07888 CALCOCO1: Calcium bin 96.5 0.58 1.3E-05 51.3 22.2 45 45-89 213-257 (546)
48 KOG0996 Structural maintenance 96.5 0.11 2.3E-06 60.7 17.2 161 41-208 868-1037(1293)
49 PF13851 GAS: Growth-arrest sp 96.5 0.5 1.1E-05 45.4 19.5 99 49-152 31-129 (201)
50 PF05667 DUF812: Protein of un 96.4 0.27 5.9E-06 54.5 19.7 57 43-99 326-382 (594)
51 PF12325 TMF_TATA_bd: TATA ele 96.4 0.15 3.3E-06 45.4 14.5 48 119-166 64-111 (120)
52 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.4 0.49 1.1E-05 42.3 18.0 34 141-174 95-128 (132)
53 TIGR00606 rad50 rad50. This fa 96.4 0.28 6E-06 58.9 21.2 31 112-142 832-862 (1311)
54 PF00038 Filament: Intermediat 96.4 1.2 2.5E-05 44.7 22.3 67 116-182 68-134 (312)
55 PF15070 GOLGA2L5: Putative go 96.4 0.25 5.4E-06 55.0 18.9 115 49-164 84-208 (617)
56 KOG1029 Endocytic adaptor prot 96.3 0.44 9.5E-06 53.9 20.2 55 46-100 445-499 (1118)
57 PF10473 CENP-F_leu_zip: Leuci 96.3 0.72 1.6E-05 42.3 18.4 57 123-179 59-115 (140)
58 PF04156 IncA: IncA protein; 96.3 0.18 4E-06 47.1 15.1 26 118-143 125-150 (191)
59 KOG0980 Actin-binding protein 96.1 0.97 2.1E-05 51.8 21.8 103 49-152 390-502 (980)
60 KOG1029 Endocytic adaptor prot 96.1 0.62 1.3E-05 52.7 19.8 56 47-102 439-494 (1118)
61 PF12325 TMF_TATA_bd: TATA ele 96.1 0.35 7.7E-06 43.1 14.9 41 148-188 72-114 (120)
62 COG4942 Membrane-bound metallo 96.1 1.5 3.3E-05 46.7 21.9 56 45-100 38-93 (420)
63 PRK04778 septation ring format 96.0 3.1 6.8E-05 45.8 26.7 21 311-331 519-540 (569)
64 KOG4643 Uncharacterized coiled 96.0 0.34 7.4E-06 55.9 18.0 55 48-102 173-227 (1195)
65 PF12128 DUF3584: Protein of u 96.0 5.3 0.00011 47.9 34.2 97 40-136 602-705 (1201)
66 PF06008 Laminin_I: Laminin Do 95.8 1.5 3.3E-05 43.3 19.9 48 56-103 21-68 (264)
67 PF09304 Cortex-I_coil: Cortex 95.7 0.31 6.8E-06 42.7 12.7 75 117-191 10-85 (107)
68 PF04012 PspA_IM30: PspA/IM30 95.7 1.9 4.2E-05 41.2 19.5 114 48-164 26-139 (221)
69 PF15070 GOLGA2L5: Putative go 95.6 5 0.00011 45.0 28.8 129 50-178 20-149 (617)
70 PF10174 Cast: RIM-binding pro 95.6 1.6 3.5E-05 50.0 21.3 26 58-83 286-311 (775)
71 PRK01156 chromosome segregatio 95.6 0.91 2E-05 52.2 19.6 11 368-378 761-771 (895)
72 COG2433 Uncharacterized conser 95.6 0.27 5.8E-06 54.2 14.2 76 116-191 429-516 (652)
73 COG1340 Uncharacterized archae 95.5 3.3 7.3E-05 42.3 21.6 36 113-148 155-190 (294)
74 PF12329 TMF_DNA_bd: TATA elem 95.5 0.13 2.8E-06 42.1 9.1 65 78-143 3-67 (74)
75 PF11932 DUF3450: Protein of u 95.5 2.4 5.3E-05 41.6 19.8 88 80-182 49-141 (251)
76 PF10174 Cast: RIM-binding pro 95.5 1.3 2.8E-05 50.7 19.9 66 117-182 358-423 (775)
77 KOG0971 Microtubule-associated 95.5 0.72 1.6E-05 53.0 17.5 107 43-151 330-438 (1243)
78 PF00038 Filament: Intermediat 95.5 0.62 1.4E-05 46.6 15.8 43 58-100 194-236 (312)
79 PF14662 CCDC155: Coiled-coil 95.4 1.7 3.7E-05 41.8 17.6 69 114-182 58-126 (193)
80 PF01442 Apolipoprotein: Apoli 95.4 1.7 3.7E-05 39.3 17.1 14 87-100 5-18 (202)
81 PF04582 Reo_sigmaC: Reovirus 95.4 0.032 6.8E-07 57.4 6.2 56 45-100 28-83 (326)
82 PF13870 DUF4201: Domain of un 95.4 2.3 5E-05 39.6 18.2 27 44-70 41-67 (177)
83 PRK01156 chromosome segregatio 95.3 2 4.3E-05 49.5 21.2 9 50-58 171-179 (895)
84 PF05667 DUF812: Protein of un 95.3 1.9 4.1E-05 48.0 20.1 57 47-103 323-379 (594)
85 PF10473 CENP-F_leu_zip: Leuci 95.3 2.3 5.1E-05 39.0 18.7 104 45-163 10-113 (140)
86 PF13851 GAS: Growth-arrest sp 95.3 3 6.6E-05 40.1 20.7 11 194-204 161-171 (201)
87 PF12795 MscS_porin: Mechanose 95.2 2.3 5E-05 41.6 18.4 125 43-167 83-208 (240)
88 KOG4674 Uncharacterized conser 95.2 1.8 3.9E-05 53.3 20.8 100 50-150 1234-1341(1822)
89 TIGR01000 bacteriocin_acc bact 95.2 1.2 2.7E-05 47.3 17.7 22 43-64 102-123 (457)
90 PF10146 zf-C4H2: Zinc finger- 95.1 0.91 2E-05 44.7 15.3 58 123-180 46-103 (230)
91 PF04849 HAP1_N: HAP1 N-termin 95.1 3.2 6.9E-05 42.6 19.6 111 41-169 156-266 (306)
92 PRK11281 hypothetical protein; 95.1 1.9 4.2E-05 51.2 20.4 34 349-382 417-456 (1113)
93 KOG0976 Rho/Rac1-interacting s 95.1 4.2 9.1E-05 46.6 21.6 83 82-164 286-371 (1265)
94 PF06818 Fez1: Fez1; InterPro 95.0 1.4 3.1E-05 42.7 15.9 46 41-86 34-79 (202)
95 TIGR03185 DNA_S_dndD DNA sulfu 95.0 1.5 3.3E-05 48.9 18.5 12 123-134 449-460 (650)
96 PRK12704 phosphodiesterase; Pr 95.0 1 2.2E-05 49.2 16.8 9 174-182 160-168 (520)
97 PF08317 Spc7: Spc7 kinetochor 95.0 2.5 5.3E-05 43.4 18.7 31 152-182 231-261 (325)
98 PRK10929 putative mechanosensi 94.9 1.7 3.6E-05 51.7 19.2 121 44-164 172-292 (1109)
99 KOG0963 Transcription factor/C 94.9 1.8 3.8E-05 48.1 18.0 72 111-182 244-327 (629)
100 PRK04863 mukB cell division pr 94.9 5.4 0.00012 49.0 23.8 113 67-181 294-406 (1486)
101 PF10186 Atg14: UV radiation r 94.9 3.3 7.2E-05 40.6 18.7 15 48-62 23-37 (302)
102 PF12795 MscS_porin: Mechanose 94.8 2 4.4E-05 41.9 16.9 136 47-182 80-216 (240)
103 TIGR03319 YmdA_YtgF conserved 94.7 2.7 5.9E-05 46.0 19.1 34 232-265 254-287 (514)
104 KOG4360 Uncharacterized coiled 94.7 1.5 3.3E-05 47.6 16.6 129 46-182 160-299 (596)
105 PF05701 WEMBL: Weak chloropla 94.7 4.3 9.4E-05 44.4 20.6 10 311-320 458-467 (522)
106 PRK12704 phosphodiesterase; Pr 94.7 2.8 6.1E-05 45.9 19.1 6 240-245 268-273 (520)
107 PF04111 APG6: Autophagy prote 94.6 0.93 2E-05 46.5 14.5 22 376-398 274-295 (314)
108 PF04849 HAP1_N: HAP1 N-termin 94.6 2.3 5.1E-05 43.6 17.1 131 41-179 163-297 (306)
109 COG1340 Uncharacterized archae 94.6 6.1 0.00013 40.4 25.8 81 80-168 20-100 (294)
110 KOG0995 Centromere-associated 94.6 3.3 7.1E-05 45.6 19.0 40 337-376 526-565 (581)
111 KOG0980 Actin-binding protein 94.6 5.7 0.00012 45.8 21.3 15 43-57 391-405 (980)
112 PRK04778 septation ring format 94.5 4.1 8.9E-05 44.9 20.1 30 151-180 383-412 (569)
113 TIGR03007 pepcterm_ChnLen poly 94.5 3.1 6.8E-05 44.4 18.7 23 389-411 474-496 (498)
114 PF14662 CCDC155: Coiled-coil 94.5 5 0.00011 38.7 21.0 79 88-167 61-139 (193)
115 PRK10884 SH3 domain-containing 94.4 0.61 1.3E-05 45.2 12.0 21 50-70 91-111 (206)
116 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.4 3.6 7.8E-05 36.8 17.3 22 158-179 98-119 (132)
117 PF05335 DUF745: Protein of un 94.4 3.4 7.5E-05 39.6 16.7 108 67-182 61-168 (188)
118 KOG0971 Microtubule-associated 94.4 2.3 5E-05 49.1 17.7 19 50-68 422-440 (1243)
119 TIGR03007 pepcterm_ChnLen poly 94.2 6.5 0.00014 42.0 20.5 19 45-63 168-186 (498)
120 PRK10476 multidrug resistance 94.2 3.6 7.7E-05 42.0 17.7 20 50-69 84-103 (346)
121 TIGR01000 bacteriocin_acc bact 94.1 1.9 4.1E-05 45.9 16.0 10 226-235 338-347 (457)
122 PF09304 Cortex-I_coil: Cortex 94.1 3.2 6.9E-05 36.5 14.4 45 114-158 56-100 (107)
123 PF09730 BicD: Microtubule-ass 94.1 5.1 0.00011 45.6 19.8 138 45-182 265-429 (717)
124 TIGR03319 YmdA_YtgF conserved 94.1 2.3 5E-05 46.5 16.8 28 172-199 152-183 (514)
125 PF05010 TACC: Transforming ac 94.1 6.3 0.00014 38.4 21.0 48 48-95 12-59 (207)
126 PRK00106 hypothetical protein; 94.0 4.8 0.0001 44.4 19.1 10 173-182 174-183 (535)
127 PF04111 APG6: Autophagy prote 93.9 1.3 2.8E-05 45.4 13.9 63 119-181 67-129 (314)
128 KOG0612 Rho-associated, coiled 93.9 7.3 0.00016 46.4 20.8 57 50-106 470-534 (1317)
129 TIGR01005 eps_transp_fam exopo 93.8 3.1 6.8E-05 47.0 18.0 83 80-163 288-371 (754)
130 PRK00106 hypothetical protein; 93.8 2.8 6.1E-05 46.1 16.9 38 232-269 275-312 (535)
131 PF05384 DegS: Sensor protein 93.6 6.5 0.00014 36.8 18.7 125 44-182 26-150 (159)
132 KOG0995 Centromere-associated 93.5 14 0.00031 40.8 32.6 131 43-182 233-377 (581)
133 smart00787 Spc7 Spc7 kinetocho 93.5 4.5 9.8E-05 41.6 16.8 51 84-135 148-198 (312)
134 PF10186 Atg14: UV radiation r 93.5 8.2 0.00018 37.8 18.9 20 44-63 26-45 (302)
135 PF15397 DUF4618: Domain of un 93.5 9.4 0.0002 38.4 25.0 73 113-188 78-154 (258)
136 PF07106 TBPIP: Tat binding pr 93.4 0.66 1.4E-05 42.9 9.8 57 45-101 72-137 (169)
137 PRK10884 SH3 domain-containing 93.4 1.8 3.9E-05 42.0 13.0 14 86-99 99-112 (206)
138 KOG4673 Transcription factor T 93.3 8.9 0.00019 43.4 19.3 32 69-100 449-480 (961)
139 KOG0994 Extracellular matrix g 93.2 7.9 0.00017 46.1 19.5 96 68-164 1572-1667(1758)
140 KOG0978 E3 ubiquitin ligase in 93.2 3.6 7.8E-05 46.5 16.6 102 116-220 538-642 (698)
141 KOG0977 Nuclear envelope prote 93.1 6.1 0.00013 43.6 17.9 12 43-54 40-51 (546)
142 TIGR03017 EpsF chain length de 93.1 4.1 9E-05 42.7 16.4 21 45-65 215-235 (444)
143 PF09730 BicD: Microtubule-ass 93.1 12 0.00027 42.6 20.7 128 50-182 32-166 (717)
144 KOG4674 Uncharacterized conser 93.0 11 0.00024 46.8 21.4 64 43-106 176-243 (1822)
145 PF05911 DUF869: Plant protein 93.0 8.5 0.00018 44.2 19.5 99 84-182 67-165 (769)
146 TIGR02680 conserved hypothetic 92.9 5.5 0.00012 48.5 18.9 31 357-387 606-636 (1353)
147 PF13870 DUF4201: Domain of un 92.9 8.1 0.00017 36.0 21.1 114 43-156 4-131 (177)
148 PF04582 Reo_sigmaC: Reovirus 92.8 0.22 4.8E-06 51.3 6.2 48 52-99 56-103 (326)
149 TIGR01005 eps_transp_fam exopo 92.8 3.2 7E-05 46.9 16.0 48 44-91 287-334 (754)
150 PF06160 EzrA: Septation ring 92.8 9.6 0.00021 42.1 19.2 99 79-182 312-410 (560)
151 KOG4673 Transcription factor T 92.8 19 0.0004 41.0 20.9 171 55-228 456-662 (961)
152 PF11932 DUF3450: Protein of u 92.8 3.4 7.4E-05 40.6 14.3 43 121-163 47-89 (251)
153 KOG0964 Structural maintenance 92.8 8.4 0.00018 45.1 18.8 56 122-177 396-451 (1200)
154 COG2433 Uncharacterized conser 92.7 1.3 2.8E-05 49.1 12.0 12 257-268 584-595 (652)
155 KOG0976 Rho/Rac1-interacting s 92.7 4.5 9.8E-05 46.3 16.4 65 75-140 101-165 (1265)
156 PRK11281 hypothetical protein; 92.6 3.6 7.7E-05 49.1 16.3 17 43-59 92-108 (1113)
157 KOG0964 Structural maintenance 92.6 7.6 0.00016 45.4 18.1 42 118-159 330-371 (1200)
158 PF09755 DUF2046: Uncharacteri 92.5 11 0.00024 38.9 17.7 26 41-66 37-62 (310)
159 COG4477 EzrA Negative regulato 92.5 10 0.00022 41.8 18.2 62 119-180 350-411 (570)
160 PF06818 Fez1: Fez1; InterPro 92.5 11 0.00024 36.6 16.8 78 50-135 29-106 (202)
161 COG4372 Uncharacterized protei 92.3 18 0.00038 38.6 20.8 103 66-169 182-284 (499)
162 TIGR03185 DNA_S_dndD DNA sulfu 92.2 6.4 0.00014 43.9 17.2 45 114-158 207-251 (650)
163 PF12072 DUF3552: Domain of un 92.2 11 0.00024 36.0 17.4 62 138-199 118-185 (201)
164 KOG0946 ER-Golgi vesicle-tethe 92.2 13 0.00027 42.9 19.0 138 50-187 662-828 (970)
165 PF07106 TBPIP: Tat binding pr 92.2 0.78 1.7E-05 42.4 8.5 60 72-144 78-137 (169)
166 KOG0977 Nuclear envelope prote 92.2 7.6 0.00016 42.9 17.0 15 50-64 40-54 (546)
167 PF15254 CCDC14: Coiled-coil d 92.0 1.7 3.7E-05 49.3 12.2 88 47-144 389-476 (861)
168 KOG0979 Structural maintenance 91.9 19 0.00042 42.3 20.4 56 45-100 174-235 (1072)
169 cd00632 Prefoldin_beta Prefold 91.9 5.2 0.00011 34.3 12.6 26 45-70 6-31 (105)
170 KOG0018 Structural maintenance 91.9 15 0.00033 43.3 19.6 68 115-182 401-468 (1141)
171 PF06120 Phage_HK97_TLTM: Tail 91.8 16 0.00034 37.7 17.9 48 43-97 53-105 (301)
172 PF11559 ADIP: Afadin- and alp 91.7 6.9 0.00015 35.4 14.0 15 86-100 58-72 (151)
173 KOG0978 E3 ubiquitin ligase in 91.7 28 0.00061 39.6 21.6 127 55-182 464-597 (698)
174 KOG0804 Cytoplasmic Zn-finger 91.7 8.9 0.00019 41.3 16.4 72 112-186 378-449 (493)
175 TIGR02680 conserved hypothetic 91.7 7.4 0.00016 47.4 17.9 21 44-64 229-249 (1353)
176 PF06005 DUF904: Protein of un 91.6 4.4 9.6E-05 33.1 11.2 18 83-100 7-24 (72)
177 PF09755 DUF2046: Uncharacteri 91.6 18 0.0004 37.3 22.0 14 48-61 23-36 (310)
178 COG5185 HEC1 Protein involved 91.4 21 0.00046 38.9 18.8 40 337-376 567-606 (622)
179 PF10481 CENP-F_N: Cenp-F N-te 91.4 6.6 0.00014 39.8 14.3 48 52-99 18-65 (307)
180 PRK03947 prefoldin subunit alp 91.3 4.5 9.9E-05 36.1 12.2 27 44-70 5-31 (140)
181 COG1842 PspA Phage shock prote 91.1 17 0.00036 35.8 18.0 49 113-161 89-137 (225)
182 PRK04406 hypothetical protein; 91.0 1.9 4.2E-05 35.4 8.6 47 137-183 4-50 (75)
183 TIGR03017 EpsF chain length de 91.0 11 0.00023 39.7 16.4 18 82-99 256-273 (444)
184 PRK10929 putative mechanosensi 91.0 7.2 0.00016 46.5 16.4 59 43-101 63-130 (1109)
185 PF05335 DUF745: Protein of un 90.9 16 0.00034 35.2 17.7 95 78-180 79-173 (188)
186 COG4372 Uncharacterized protei 90.9 25 0.00054 37.5 26.3 15 85-99 142-156 (499)
187 PF08581 Tup_N: Tup N-terminal 90.8 8.3 0.00018 32.1 12.2 74 121-194 2-75 (79)
188 PF13863 DUF4200: Domain of un 90.8 10 0.00023 32.9 16.5 109 52-164 7-115 (126)
189 PF05010 TACC: Transforming ac 90.6 18 0.00039 35.3 19.2 6 94-99 69-74 (207)
190 COG0419 SbcC ATPase involved i 90.6 40 0.00086 39.3 22.4 16 118-133 363-378 (908)
191 PF05622 HOOK: HOOK protein; 90.6 0.076 1.6E-06 59.7 0.0 48 46-100 240-287 (713)
192 PF13166 AAA_13: AAA domain 90.6 9 0.0002 42.7 16.2 15 366-380 633-647 (712)
193 TIGR02338 gimC_beta prefoldin, 90.5 7 0.00015 33.8 12.2 23 48-70 6-28 (110)
194 PF12329 TMF_DNA_bd: TATA elem 90.4 3.7 8.1E-05 33.5 9.8 22 85-106 3-24 (74)
195 PRK10361 DNA recombination pro 90.4 23 0.0005 38.6 18.5 21 353-373 390-410 (475)
196 KOG4643 Uncharacterized coiled 90.3 24 0.00052 41.6 19.1 25 381-405 637-662 (1195)
197 PF13166 AAA_13: AAA domain 90.3 18 0.0004 40.3 18.3 14 352-365 637-650 (712)
198 PF15254 CCDC14: Coiled-coil d 90.2 28 0.00061 40.0 19.3 63 41-103 390-457 (861)
199 PF04871 Uso1_p115_C: Uso1 / p 90.2 12 0.00026 34.0 13.8 29 149-177 82-110 (136)
200 KOG2077 JNK/SAPK-associated pr 89.9 6.8 0.00015 43.5 13.8 105 87-193 329-435 (832)
201 PF07798 DUF1640: Protein of u 89.8 17 0.00038 34.0 16.2 115 56-191 31-146 (177)
202 TIGR02977 phageshock_pspA phag 89.8 20 0.00044 34.7 19.6 111 50-163 29-139 (219)
203 PRK15422 septal ring assembly 89.7 7.1 0.00015 32.6 10.8 19 82-100 6-24 (79)
204 KOG0999 Microtubule-associated 89.6 30 0.00066 38.5 18.4 12 297-308 362-373 (772)
205 COG0419 SbcC ATPase involved i 89.6 47 0.001 38.7 22.6 6 225-230 459-464 (908)
206 PF12761 End3: Actin cytoskele 89.5 3.1 6.7E-05 40.2 9.9 56 45-100 96-152 (195)
207 PF10146 zf-C4H2: Zinc finger- 89.5 15 0.00033 36.3 15.0 50 118-167 34-83 (230)
208 KOG0963 Transcription factor/C 89.4 11 0.00025 41.9 15.3 55 46-100 243-305 (629)
209 PF02994 Transposase_22: L1 tr 89.3 1.3 2.7E-05 46.5 7.8 49 134-182 141-189 (370)
210 KOG0018 Structural maintenance 89.3 8.4 0.00018 45.4 14.7 110 46-157 235-344 (1141)
211 PF00769 ERM: Ezrin/radixin/mo 89.2 24 0.00053 35.0 16.4 62 121-182 52-113 (246)
212 KOG0288 WD40 repeat protein Ti 89.0 15 0.00032 39.4 15.1 25 117-141 49-73 (459)
213 PF14992 TMCO5: TMCO5 family 89.0 5.7 0.00012 40.4 11.7 123 56-181 4-139 (280)
214 PF13514 AAA_27: AAA domain 88.8 30 0.00065 41.2 19.5 29 72-100 807-835 (1111)
215 COG1382 GimC Prefoldin, chaper 88.6 17 0.00037 32.6 13.3 43 45-87 6-48 (119)
216 TIGR00998 8a0101 efflux pump m 88.5 29 0.00062 34.8 18.2 13 225-237 224-236 (334)
217 KOG0612 Rho-associated, coiled 88.4 67 0.0014 38.9 22.9 117 125-247 611-729 (1317)
218 KOG0804 Cytoplasmic Zn-finger 88.3 26 0.00056 38.0 16.5 123 50-182 330-452 (493)
219 KOG4809 Rab6 GTPase-interactin 88.2 28 0.00062 38.5 17.0 159 43-202 336-500 (654)
220 PRK11020 hypothetical protein; 88.2 3.5 7.6E-05 36.6 8.5 49 43-100 3-51 (118)
221 PF06785 UPF0242: Uncharacteri 88.0 33 0.0007 36.0 16.5 105 49-158 64-169 (401)
222 KOG1853 LIS1-interacting prote 88.0 32 0.0007 34.8 16.7 80 113-193 88-174 (333)
223 PF05483 SCP-1: Synaptonemal c 87.8 56 0.0012 37.3 20.5 72 78-157 578-649 (786)
224 COG1730 GIM5 Predicted prefold 87.7 19 0.00041 33.3 13.4 26 45-70 6-31 (145)
225 PRK02119 hypothetical protein; 87.6 4.4 9.5E-05 33.1 8.3 44 139-182 4-47 (73)
226 TIGR00634 recN DNA repair prot 87.6 37 0.00081 37.3 18.1 20 80-99 219-238 (563)
227 PF13514 AAA_27: AAA domain 87.5 68 0.0015 38.3 21.3 31 63-93 805-835 (1111)
228 KOG0243 Kinesin-like protein [ 87.5 70 0.0015 38.1 30.4 26 75-100 443-468 (1041)
229 KOG4603 TBP-1 interacting prot 87.5 27 0.00059 33.4 14.4 30 119-148 119-148 (201)
230 PF14362 DUF4407: Domain of un 87.4 27 0.00058 35.1 15.7 17 201-217 257-273 (301)
231 PF12072 DUF3552: Domain of un 87.1 29 0.00062 33.2 16.8 25 64-88 69-93 (201)
232 PRK10803 tol-pal system protei 87.1 8.5 0.00018 38.4 11.7 17 367-383 234-250 (263)
233 PRK09343 prefoldin subunit bet 87.1 21 0.00046 31.6 13.6 27 44-70 6-32 (121)
234 PRK10361 DNA recombination pro 87.1 51 0.0011 36.0 22.9 19 357-375 370-388 (475)
235 PF04375 HemX: HemX; InterPro 87.0 42 0.00091 35.2 17.3 24 46-69 54-77 (372)
236 PF01576 Myosin_tail_1: Myosin 87.0 0.19 4.1E-06 57.9 0.0 120 62-182 134-253 (859)
237 KOG1853 LIS1-interacting prote 87.0 37 0.00081 34.4 19.9 56 114-169 110-165 (333)
238 PF15397 DUF4618: Domain of un 86.9 37 0.0008 34.3 19.4 33 47-79 8-40 (258)
239 PF04728 LPP: Lipoprotein leuc 86.8 7.2 0.00016 30.5 8.6 45 116-160 3-47 (56)
240 KOG4360 Uncharacterized coiled 86.8 54 0.0012 36.2 17.9 75 107-181 203-277 (596)
241 PF05266 DUF724: Protein of un 86.7 15 0.00032 35.3 12.6 9 77-85 114-122 (190)
242 PRK04325 hypothetical protein; 86.7 5.1 0.00011 32.7 8.2 43 140-182 5-47 (74)
243 PRK15178 Vi polysaccharide exp 86.7 51 0.0011 35.7 18.2 104 55-160 226-337 (434)
244 PF01576 Myosin_tail_1: Myosin 86.6 0.2 4.4E-06 57.7 0.0 30 153-182 456-485 (859)
245 PF15290 Syntaphilin: Golgi-lo 86.6 30 0.00066 35.3 15.1 23 78-100 80-102 (305)
246 PF10168 Nup88: Nuclear pore c 86.5 11 0.00025 42.9 13.7 65 117-181 559-623 (717)
247 PF08826 DMPK_coil: DMPK coile 86.3 6.8 0.00015 31.1 8.4 31 106-136 29-59 (61)
248 PF07889 DUF1664: Protein of u 86.3 25 0.00055 31.8 13.3 22 122-143 88-109 (126)
249 KOG0239 Kinesin (KAR3 subfamil 86.3 40 0.00087 38.3 17.6 10 371-380 453-462 (670)
250 PF09787 Golgin_A5: Golgin sub 86.3 24 0.00051 38.6 15.5 38 40-77 276-313 (511)
251 PRK00736 hypothetical protein; 86.2 4.7 0.0001 32.4 7.6 41 142-182 3-43 (68)
252 PF01442 Apolipoprotein: Apoli 86.2 25 0.00054 31.6 23.6 25 50-74 3-27 (202)
253 PF15619 Lebercilin: Ciliary p 85.9 34 0.00074 32.9 21.8 26 119-144 121-146 (194)
254 PF10234 Cluap1: Clusterin-ass 85.8 23 0.00049 35.9 14.0 66 117-182 170-235 (267)
255 PRK11546 zraP zinc resistance 85.8 12 0.00026 34.6 11.0 50 79-136 60-109 (143)
256 PRK04406 hypothetical protein; 85.8 7.2 0.00016 32.1 8.6 50 132-181 6-55 (75)
257 PF04102 SlyX: SlyX; InterPro 85.8 4.3 9.2E-05 32.6 7.2 41 142-182 2-42 (69)
258 PRK12705 hypothetical protein; 85.8 22 0.00047 39.1 14.8 41 232-272 248-288 (508)
259 PRK02793 phi X174 lysis protei 85.8 6.2 0.00013 32.1 8.2 42 141-182 5-46 (72)
260 COG5185 HEC1 Protein involved 85.6 61 0.0013 35.5 17.8 91 50-152 269-359 (622)
261 KOG0946 ER-Golgi vesicle-tethe 85.6 38 0.00082 39.2 16.7 27 74-100 651-677 (970)
262 PF04102 SlyX: SlyX; InterPro 85.6 4.4 9.6E-05 32.5 7.2 47 116-162 4-50 (69)
263 KOG1899 LAR transmembrane tyro 85.5 23 0.0005 39.9 14.7 86 59-156 125-214 (861)
264 TIGR00634 recN DNA repair prot 85.5 42 0.0009 37.0 17.1 22 78-99 271-292 (563)
265 PRK00295 hypothetical protein; 85.5 6.1 0.00013 31.8 7.9 41 142-182 3-43 (68)
266 PF06005 DUF904: Protein of un 85.4 19 0.0004 29.5 11.7 59 121-179 9-67 (72)
267 PF10205 KLRAQ: Predicted coil 85.4 12 0.00025 32.8 10.1 70 43-135 3-73 (102)
268 PF00769 ERM: Ezrin/radixin/mo 85.4 41 0.00089 33.4 17.0 68 115-182 53-120 (246)
269 PF05483 SCP-1: Synaptonemal c 85.2 76 0.0016 36.3 19.4 24 107-130 280-303 (786)
270 KOG0288 WD40 repeat protein Ti 85.2 30 0.00064 37.2 14.8 77 44-128 12-88 (459)
271 PHA03332 membrane glycoprotein 85.1 27 0.00059 41.4 15.5 24 45-68 884-907 (1328)
272 PF01920 Prefoldin_2: Prefoldi 85.1 9 0.0002 32.0 9.3 24 46-69 6-29 (106)
273 TIGR01010 BexC_CtrB_KpsE polys 85.0 49 0.0011 34.0 17.0 64 72-135 169-233 (362)
274 PRK00295 hypothetical protein; 85.0 7.2 0.00016 31.4 8.2 41 116-156 5-45 (68)
275 PF13747 DUF4164: Domain of un 84.9 23 0.00049 30.0 12.2 42 119-160 35-76 (89)
276 TIGR02231 conserved hypothetic 84.9 9.8 0.00021 41.3 11.8 41 120-160 128-168 (525)
277 PF10481 CENP-F_N: Cenp-F N-te 84.8 47 0.001 33.9 15.4 69 124-192 61-132 (307)
278 KOG1003 Actin filament-coating 84.6 41 0.00089 32.7 19.6 54 129-182 94-147 (205)
279 COG3206 GumC Uncharacterized p 84.4 43 0.00094 35.7 16.2 45 46-90 286-330 (458)
280 PRK00846 hypothetical protein; 84.3 9.8 0.00021 31.6 8.8 45 138-182 7-51 (77)
281 TIGR02338 gimC_beta prefoldin, 84.3 26 0.00057 30.2 12.3 26 74-99 18-43 (110)
282 PF14197 Cep57_CLD_2: Centroso 84.1 16 0.00035 29.5 9.8 9 92-100 3-11 (69)
283 KOG0982 Centrosomal protein Nu 84.0 68 0.0015 34.8 17.4 65 113-177 301-365 (502)
284 PRK09841 cryptic autophosphory 84.0 53 0.0011 37.4 17.5 53 78-130 272-325 (726)
285 PF11570 E2R135: Coiled-coil r 84.0 19 0.00041 32.8 11.1 94 42-152 12-106 (136)
286 TIGR03545 conserved hypothetic 83.9 25 0.00055 39.0 14.5 97 137-238 216-312 (555)
287 PF03962 Mnd1: Mnd1 family; I 83.9 21 0.00046 34.0 12.3 18 116-133 110-127 (188)
288 PRK11519 tyrosine kinase; Prov 83.8 63 0.0014 36.8 17.9 51 78-128 272-323 (719)
289 PF10168 Nup88: Nuclear pore c 83.6 73 0.0016 36.6 18.3 9 91-99 583-591 (717)
290 PF09787 Golgin_A5: Golgin sub 83.6 73 0.0016 34.8 20.4 70 113-182 211-298 (511)
291 PF02994 Transposase_22: L1 tr 83.6 4.1 8.8E-05 42.7 7.9 21 279-299 289-309 (370)
292 PRK00736 hypothetical protein; 83.4 7.8 0.00017 31.2 7.7 41 116-156 5-45 (68)
293 PF13863 DUF4200: Domain of un 83.4 29 0.00064 30.1 15.9 25 121-145 79-103 (126)
294 KOG0962 DNA repair protein RAD 83.2 99 0.0021 37.7 19.5 53 50-102 793-848 (1294)
295 PF07989 Microtub_assoc: Micro 83.1 13 0.00028 30.6 9.0 67 77-143 4-70 (75)
296 PF14282 FlxA: FlxA-like prote 83.1 8.8 0.00019 33.3 8.6 21 44-64 18-38 (106)
297 KOG0979 Structural maintenance 83.1 77 0.0017 37.6 18.1 19 309-327 480-498 (1072)
298 PF14073 Cep57_CLD: Centrosome 83.0 45 0.00098 31.9 19.5 136 47-186 6-156 (178)
299 KOG1003 Actin filament-coating 83.0 48 0.001 32.3 20.2 35 56-90 29-63 (205)
300 TIGR03752 conj_TIGR03752 integ 82.9 15 0.00033 39.9 11.9 31 151-181 109-139 (472)
301 PRK10698 phage shock protein P 82.9 49 0.0011 32.3 20.9 108 50-157 29-140 (222)
302 PRK15422 septal ring assembly 82.9 27 0.00058 29.2 10.8 26 75-100 6-31 (79)
303 PRK09343 prefoldin subunit bet 82.6 34 0.00074 30.3 13.3 34 149-182 76-109 (121)
304 PRK04325 hypothetical protein; 82.6 10 0.00022 31.0 8.2 30 117-146 10-39 (74)
305 PF08647 BRE1: BRE1 E3 ubiquit 82.5 28 0.0006 29.6 11.2 22 79-100 16-37 (96)
306 TIGR01069 mutS2 MutS2 family p 82.3 33 0.00071 39.6 15.0 43 346-388 701-755 (771)
307 KOG3433 Protein involved in me 82.1 29 0.00062 33.5 12.1 32 113-144 113-144 (203)
308 PRK02793 phi X174 lysis protei 82.1 10 0.00022 30.8 8.0 42 115-156 7-48 (72)
309 PF08172 CASP_C: CASP C termin 82.0 10 0.00022 37.8 9.7 45 123-167 79-123 (248)
310 KOG2991 Splicing regulator [RN 81.9 32 0.0007 34.8 12.9 105 75-182 179-295 (330)
311 PRK00846 hypothetical protein; 81.9 8.9 0.00019 31.8 7.6 22 79-100 26-47 (77)
312 KOG1899 LAR transmembrane tyro 81.7 36 0.00078 38.4 14.3 112 45-164 104-215 (861)
313 PF15450 DUF4631: Domain of un 81.6 86 0.0019 34.7 16.9 31 114-144 410-440 (531)
314 KOG0962 DNA repair protein RAD 81.5 62 0.0013 39.4 17.0 92 73-164 833-926 (1294)
315 PF05377 FlaC_arch: Flagella a 81.4 5.9 0.00013 30.9 6.0 17 84-100 4-20 (55)
316 PF10211 Ax_dynein_light: Axon 81.3 51 0.0011 31.4 15.6 14 42-55 30-43 (189)
317 PF02403 Seryl_tRNA_N: Seryl-t 81.3 23 0.00051 30.1 10.5 14 87-100 36-49 (108)
318 PRK10869 recombination and rep 81.2 71 0.0015 35.3 16.7 13 118-130 298-310 (553)
319 COG4026 Uncharacterized protei 81.2 45 0.00098 33.2 13.4 8 93-100 118-125 (290)
320 COG3074 Uncharacterized protei 81.1 29 0.00063 28.5 10.5 62 76-152 7-68 (79)
321 KOG0244 Kinesin-like protein [ 81.1 24 0.00052 41.2 13.2 54 50-103 472-525 (913)
322 PF07111 HCR: Alpha helical co 81.1 1.1E+02 0.0024 35.1 21.5 111 41-152 474-586 (739)
323 PF10212 TTKRSYEDQ: Predicted 81.1 56 0.0012 36.1 15.4 32 147-178 483-514 (518)
324 PF05557 MAD: Mitotic checkpoi 81.0 0.49 1.1E-05 53.4 0.0 17 46-62 62-78 (722)
325 KOG4603 TBP-1 interacting prot 80.9 44 0.00095 32.0 12.7 53 43-100 77-129 (201)
326 COG1382 GimC Prefoldin, chaper 80.9 20 0.00043 32.2 10.0 36 45-80 13-48 (119)
327 PF10212 TTKRSYEDQ: Predicted 80.9 21 0.00046 39.2 12.2 49 118-169 464-512 (518)
328 PF15294 Leu_zip: Leucine zipp 80.9 46 0.00099 34.0 13.8 80 41-136 128-210 (278)
329 PF03148 Tektin: Tektin family 80.8 80 0.0017 33.3 16.3 22 78-99 263-284 (384)
330 PRK00409 recombination and DNA 80.5 53 0.0012 37.9 15.9 42 347-388 713-766 (782)
331 PRK10698 phage shock protein P 80.5 60 0.0013 31.7 17.0 16 235-250 169-184 (222)
332 PF12777 MT: Microtubule-bindi 80.5 7.2 0.00016 40.3 8.3 92 50-163 219-310 (344)
333 PF04912 Dynamitin: Dynamitin 80.5 36 0.00077 35.8 13.5 20 51-70 208-227 (388)
334 KOG2391 Vacuolar sorting prote 80.4 16 0.00035 38.2 10.6 57 113-169 222-278 (365)
335 TIGR01069 mutS2 MutS2 family p 80.4 25 0.00055 40.4 13.3 18 314-331 702-719 (771)
336 PRK10246 exonuclease subunit S 80.3 95 0.0021 37.0 18.3 25 157-181 828-852 (1047)
337 TIGR02971 heterocyst_DevB ABC 80.1 69 0.0015 32.1 17.2 27 44-70 54-80 (327)
338 PRK00286 xseA exodeoxyribonucl 80.0 36 0.00077 36.2 13.5 17 46-62 261-277 (438)
339 PF11570 E2R135: Coiled-coil r 79.7 49 0.0011 30.2 12.2 29 131-159 78-106 (136)
340 PRK02119 hypothetical protein; 79.7 15 0.00033 29.9 8.3 46 135-180 7-52 (73)
341 PF06785 UPF0242: Uncharacteri 79.7 61 0.0013 34.0 14.3 48 50-100 58-105 (401)
342 PRK10869 recombination and rep 79.4 93 0.002 34.4 16.9 28 72-99 207-234 (553)
343 PF15456 Uds1: Up-regulated Du 79.3 39 0.00084 30.4 11.5 82 44-140 21-105 (124)
344 TIGR00293 prefoldin, archaeal 79.3 14 0.0003 32.3 8.6 18 47-64 8-25 (126)
345 PF10267 Tmemb_cc2: Predicted 79.1 96 0.0021 33.2 16.8 33 258-294 338-370 (395)
346 PF03962 Mnd1: Mnd1 family; I 79.0 57 0.0012 31.1 13.3 20 121-140 108-127 (188)
347 PF04728 LPP: Lipoprotein leuc 78.9 19 0.00042 28.2 8.2 23 78-100 8-30 (56)
348 COG1730 GIM5 Predicted prefold 78.8 13 0.00029 34.3 8.6 27 44-70 12-38 (145)
349 PF09486 HrpB7: Bacterial type 78.8 58 0.0013 30.5 18.7 112 50-161 13-124 (158)
350 PLN03229 acetyl-coenzyme A car 78.8 59 0.0013 37.4 15.1 11 172-182 695-705 (762)
351 TIGR02231 conserved hypothetic 78.4 22 0.00048 38.6 11.6 28 127-154 128-155 (525)
352 PF05557 MAD: Mitotic checkpoi 78.4 0.67 1.5E-05 52.3 0.0 58 42-99 65-133 (722)
353 COG2900 SlyX Uncharacterized p 78.3 15 0.00032 30.2 7.7 43 140-182 4-46 (72)
354 KOG1962 B-cell receptor-associ 78.3 26 0.00057 34.4 10.8 9 149-157 184-192 (216)
355 PF05278 PEARLI-4: Arabidopsis 78.0 58 0.0012 33.1 13.4 42 121-162 219-260 (269)
356 TIGR02894 DNA_bind_RsfA transc 78.0 27 0.00059 32.9 10.4 66 89-163 79-144 (161)
357 KOG3990 Uncharacterized conser 77.6 8.7 0.00019 38.6 7.4 33 54-93 227-259 (305)
358 PF13747 DUF4164: Domain of un 77.5 43 0.00093 28.3 12.1 20 78-97 6-25 (89)
359 PRK13729 conjugal transfer pil 77.4 11 0.00024 41.0 8.7 31 115-145 75-105 (475)
360 KOG3433 Protein involved in me 77.1 43 0.00094 32.3 11.6 51 50-100 79-129 (203)
361 PF04949 Transcrip_act: Transc 77.0 65 0.0014 30.1 15.9 63 119-181 80-142 (159)
362 PF06705 SF-assemblin: SF-asse 77.0 78 0.0017 31.1 21.3 16 46-61 6-21 (247)
363 PF05622 HOOK: HOOK protein; 77.0 0.78 1.7E-05 51.8 0.0 9 299-307 541-549 (713)
364 PF15294 Leu_zip: Leucine zipp 76.9 92 0.002 31.8 14.8 51 121-171 130-180 (278)
365 PF14992 TMCO5: TMCO5 family 76.9 51 0.0011 33.7 12.7 28 118-145 111-138 (280)
366 TIGR03794 NHPM_micro_HlyD NHPM 76.5 1.1E+02 0.0023 32.3 17.8 24 43-66 94-117 (421)
367 smart00502 BBC B-Box C-termina 76.3 45 0.00098 28.0 14.2 29 154-182 75-103 (127)
368 PF15450 DUF4631: Domain of un 76.2 1.3E+02 0.0029 33.3 18.8 84 79-166 350-434 (531)
369 PF05103 DivIVA: DivIVA protei 76.2 2 4.2E-05 37.6 2.3 12 51-62 31-42 (131)
370 cd00890 Prefoldin Prefoldin is 76.2 17 0.00037 31.4 8.3 22 49-70 3-24 (129)
371 PF08172 CASP_C: CASP C termin 76.1 26 0.00056 35.0 10.4 32 149-180 91-122 (248)
372 PRK11519 tyrosine kinase; Prov 76.1 1.1E+02 0.0023 34.9 16.6 14 368-381 624-637 (719)
373 PF10234 Cluap1: Clusterin-ass 76.1 94 0.002 31.6 17.3 25 120-144 194-218 (267)
374 TIGR01010 BexC_CtrB_KpsE polys 76.1 99 0.0021 31.8 16.4 20 160-179 280-299 (362)
375 TIGR03495 phage_LysB phage lys 76.1 63 0.0014 29.6 12.5 8 56-63 23-30 (135)
376 PF07989 Microtub_assoc: Micro 75.7 43 0.00094 27.5 10.0 61 120-180 4-72 (75)
377 KOG1937 Uncharacterized conser 75.7 1.3E+02 0.0028 32.9 18.4 168 24-209 210-380 (521)
378 PF10498 IFT57: Intra-flagella 75.7 1E+02 0.0022 32.5 15.1 43 121-163 264-306 (359)
379 PF06248 Zw10: Centromere/kine 75.6 1.4E+02 0.003 33.2 19.5 89 45-133 7-100 (593)
380 KOG0994 Extracellular matrix g 75.5 2E+02 0.0044 35.1 27.7 30 333-362 1722-1751(1758)
381 TIGR03752 conj_TIGR03752 integ 75.4 31 0.00067 37.6 11.4 57 121-177 71-128 (472)
382 PF08232 Striatin: Striatin fa 75.4 39 0.00084 30.6 10.5 60 125-184 6-65 (134)
383 PRK00409 recombination and DNA 75.3 30 0.00064 39.9 12.0 45 120-164 517-561 (782)
384 PF05791 Bacillus_HBL: Bacillu 75.1 67 0.0015 30.4 12.5 17 136-152 141-157 (184)
385 PF07798 DUF1640: Protein of u 75.1 73 0.0016 29.8 21.0 13 87-99 80-92 (177)
386 PF08826 DMPK_coil: DMPK coile 74.9 40 0.00088 26.8 9.4 38 130-167 18-55 (61)
387 PF02050 FliJ: Flagellar FliJ 74.6 47 0.001 27.4 16.1 48 121-168 50-97 (123)
388 PLN02939 transferase, transfer 74.3 2E+02 0.0043 34.4 20.4 59 42-100 223-284 (977)
389 PRK06975 bifunctional uroporph 74.3 98 0.0021 35.0 15.5 52 45-99 346-397 (656)
390 COG4694 Uncharacterized protei 74.0 1.4E+02 0.0029 33.8 15.8 27 41-67 354-380 (758)
391 PF06008 Laminin_I: Laminin Do 73.9 96 0.0021 30.6 21.2 29 73-101 87-115 (264)
392 PRK09841 cryptic autophosphory 73.8 96 0.0021 35.3 15.5 7 369-375 630-636 (726)
393 PF05529 Bap31: B-cell recepto 73.7 14 0.00031 34.8 7.6 15 53-67 126-140 (192)
394 PRK03598 putative efflux pump 73.7 1.1E+02 0.0023 31.0 15.2 12 225-236 223-234 (331)
395 cd00632 Prefoldin_beta Prefold 73.6 57 0.0012 27.8 11.6 21 50-70 4-24 (105)
396 PF04871 Uso1_p115_C: Uso1 / p 73.5 72 0.0016 29.0 14.5 15 86-100 33-47 (136)
397 KOG3634 Troponin [Cytoskeleton 73.5 9.6 0.00021 39.6 6.7 18 196-213 286-303 (361)
398 PF06120 Phage_HK97_TLTM: Tail 73.5 1.2E+02 0.0025 31.4 16.6 31 73-103 74-104 (301)
399 PF03915 AIP3: Actin interacti 73.2 69 0.0015 34.5 13.4 66 115-182 212-277 (424)
400 cd00584 Prefoldin_alpha Prefol 73.2 31 0.00068 30.2 9.2 18 47-64 8-25 (129)
401 PRK06665 flgK flagellar hook-a 73.0 1.2E+02 0.0026 34.1 15.8 96 69-164 96-198 (627)
402 PF05064 Nsp1_C: Nsp1-like C-t 72.9 2.5 5.3E-05 37.3 2.1 44 55-98 25-68 (116)
403 TIGR03545 conserved hypothetic 72.8 54 0.0012 36.5 12.8 11 89-99 193-203 (555)
404 PF05529 Bap31: B-cell recepto 72.6 21 0.00046 33.6 8.5 14 121-134 159-172 (192)
405 PHA02414 hypothetical protein 72.6 27 0.00059 30.4 8.2 47 118-164 31-77 (111)
406 KOG0982 Centrosomal protein Nu 72.6 1.2E+02 0.0026 32.9 14.6 135 70-208 294-435 (502)
407 PF14282 FlxA: FlxA-like prote 72.5 28 0.00061 30.1 8.6 23 79-101 18-40 (106)
408 PF10779 XhlA: Haemolysin XhlA 72.5 29 0.00063 27.8 8.1 42 123-164 6-47 (71)
409 PRK05683 flgK flagellar hook-a 72.5 1.3E+02 0.0028 34.4 15.9 95 70-164 86-186 (676)
410 KOG2685 Cystoskeletal protein 72.5 79 0.0017 34.0 13.3 48 50-97 276-323 (421)
411 KOG2391 Vacuolar sorting prote 72.4 24 0.00053 36.9 9.3 56 80-136 218-273 (365)
412 KOG2264 Exostosin EXT1L [Signa 72.2 29 0.00063 38.7 10.3 27 138-164 94-120 (907)
413 PF10805 DUF2730: Protein of u 72.2 40 0.00086 29.2 9.4 54 125-178 37-92 (106)
414 PRK12705 hypothetical protein; 72.1 1.6E+02 0.0036 32.5 24.3 16 66-81 70-85 (508)
415 PF06810 Phage_GP20: Phage min 72.0 39 0.00084 31.3 9.9 30 115-144 19-48 (155)
416 KOG3091 Nuclear pore complex, 71.6 35 0.00076 37.3 10.7 107 62-180 337-443 (508)
417 PF09731 Mitofilin: Mitochondr 71.4 1.7E+02 0.0036 32.3 26.0 23 44-66 250-272 (582)
418 PRK07521 flgK flagellar hook-a 70.8 1.1E+02 0.0024 33.2 14.5 96 69-164 78-181 (483)
419 PRK14011 prefoldin subunit alp 70.6 88 0.0019 28.8 13.4 41 46-93 4-44 (144)
420 COG0497 RecN ATPase involved i 70.5 1.9E+02 0.004 32.5 17.3 67 51-118 184-254 (557)
421 PF15290 Syntaphilin: Golgi-lo 70.4 98 0.0021 31.8 12.8 18 119-136 120-137 (305)
422 PF07246 Phlebovirus_NSM: Phle 70.3 44 0.00096 33.8 10.4 15 49-63 145-159 (264)
423 PF04859 DUF641: Plant protein 70.2 12 0.00027 33.9 6.0 22 78-99 92-113 (131)
424 PF09789 DUF2353: Uncharacteri 70.2 1.4E+02 0.0031 31.0 21.4 85 74-158 80-175 (319)
425 COG4026 Uncharacterized protei 70.1 58 0.0013 32.5 10.9 13 167-179 193-205 (290)
426 KOG0163 Myosin class VI heavy 70.1 2.3E+02 0.0049 33.3 17.4 16 112-127 899-914 (1259)
427 TIGR00293 prefoldin, archaeal 70.0 43 0.00093 29.2 9.3 23 48-70 2-24 (126)
428 PRK15396 murein lipoprotein; P 69.8 31 0.00067 28.7 7.7 8 3-10 3-10 (78)
429 COG3096 MukB Uncharacterized p 69.7 1.6E+02 0.0034 34.4 15.3 126 43-172 989-1115(1480)
430 PF05531 NPV_P10: Nucleopolyhe 69.5 31 0.00068 28.6 7.6 12 89-100 13-24 (75)
431 PRK15396 murein lipoprotein; P 69.5 18 0.0004 30.1 6.4 21 46-66 26-46 (78)
432 PF00901 Orbi_VP5: Orbivirus o 69.3 1.9E+02 0.004 32.0 18.7 26 117-142 141-166 (508)
433 PF10805 DUF2730: Protein of u 69.3 44 0.00095 29.0 9.0 32 117-148 50-83 (106)
434 PRK06945 flgK flagellar hook-a 69.3 1.9E+02 0.0042 32.8 16.4 115 68-182 85-213 (651)
435 COG3206 GumC Uncharacterized p 69.0 1.7E+02 0.0036 31.3 18.4 53 113-165 317-370 (458)
436 KOG4637 Adaptor for phosphoino 68.9 1.7E+02 0.0037 31.4 17.1 35 108-142 215-249 (464)
437 PF04912 Dynamitin: Dynamitin 68.8 1.6E+02 0.0034 31.0 17.0 18 40-57 241-258 (388)
438 PF09486 HrpB7: Bacterial type 68.6 1E+02 0.0023 28.9 16.0 121 48-168 18-138 (158)
439 KOG1760 Molecular chaperone Pr 68.6 75 0.0016 28.9 10.4 34 48-81 19-52 (131)
440 PF10458 Val_tRNA-synt_C: Valy 68.3 33 0.00072 27.0 7.5 28 121-148 2-29 (66)
441 PF14197 Cep57_CLD_2: Centroso 68.0 64 0.0014 26.1 10.1 17 124-140 6-22 (69)
442 KOG4302 Microtubule-associated 67.5 25 0.00055 39.8 8.9 75 108-182 102-191 (660)
443 PF05008 V-SNARE: Vesicle tran 67.4 62 0.0014 25.8 9.9 45 55-99 6-51 (79)
444 KOG2196 Nuclear porin [Nuclear 67.2 1.4E+02 0.0031 30.0 14.4 22 113-134 138-159 (254)
445 PRK08871 flgK flagellar hook-a 67.2 2.2E+02 0.0048 32.2 16.2 94 70-163 88-188 (626)
446 PF10211 Ax_dynein_light: Axon 67.1 1.2E+02 0.0026 28.9 16.3 32 119-150 123-154 (189)
447 PF09403 FadA: Adhesion protei 67.1 98 0.0021 28.0 13.1 116 9-137 4-121 (126)
448 PRK12714 flgK flagellar hook-a 66.6 2.3E+02 0.0049 32.0 16.6 111 69-179 85-206 (624)
449 PRK14011 prefoldin subunit alp 66.6 1.1E+02 0.0023 28.2 12.0 25 75-99 5-29 (144)
450 TIGR01554 major_cap_HK97 phage 66.5 32 0.00069 35.7 9.0 18 83-100 2-19 (378)
451 KOG0244 Kinesin-like protein [ 66.5 1.4E+02 0.0031 35.1 14.7 90 43-132 472-564 (913)
452 PF10267 Tmemb_cc2: Predicted 66.2 1.9E+02 0.0042 31.0 16.5 21 158-178 298-318 (395)
453 PLN02320 seryl-tRNA synthetase 66.0 1E+02 0.0022 34.1 12.9 30 362-391 357-389 (502)
454 PF15066 CAGE1: Cancer-associa 65.8 2E+02 0.0043 31.6 14.6 117 56-191 314-433 (527)
455 PF14915 CCDC144C: CCDC144C pr 65.7 1.7E+02 0.0037 30.3 19.7 51 50-100 135-185 (305)
456 PRK13182 racA polar chromosome 65.6 43 0.00093 31.8 8.9 23 128-150 123-145 (175)
457 PF12252 SidE: Dot/Icm substra 65.6 3.1E+02 0.0068 33.2 25.1 73 78-151 1094-1174(1439)
458 PRK05431 seryl-tRNA synthetase 65.5 49 0.0011 35.4 10.4 30 229-258 168-200 (425)
459 PF13805 Pil1: Eisosome compon 65.5 1.6E+02 0.0036 30.0 15.7 97 79-177 95-191 (271)
460 cd07623 BAR_SNX1_2 The Bin/Amp 65.2 1.4E+02 0.003 29.0 20.3 45 48-92 15-59 (224)
461 PRK09973 putative outer membra 64.6 42 0.00092 28.4 7.7 46 117-162 25-70 (85)
462 KOG4403 Cell surface glycoprot 64.4 1.4E+02 0.0031 32.5 13.2 14 196-209 321-334 (575)
463 PF05957 DUF883: Bacterial pro 64.4 65 0.0014 26.9 8.9 57 328-384 20-76 (94)
464 TIGR02492 flgK_ends flagellar 64.2 1.7E+02 0.0038 29.8 14.7 96 69-164 84-186 (322)
465 COG4487 Uncharacterized protei 64.2 2.2E+02 0.0048 31.0 20.0 151 55-222 60-218 (438)
466 COG1256 FlgK Flagellar hook-as 63.9 2.4E+02 0.0053 31.4 15.6 98 66-163 85-189 (552)
467 TIGR02473 flagell_FliJ flagell 63.7 1E+02 0.0022 26.9 17.4 55 120-174 65-119 (141)
468 PRK15178 Vi polysaccharide exp 63.5 1.8E+02 0.0039 31.6 14.0 103 79-184 222-333 (434)
469 PF11802 CENP-K: Centromere-as 63.3 1.8E+02 0.0039 29.6 18.3 55 71-129 18-72 (268)
470 PF08657 DASH_Spc34: DASH comp 63.1 28 0.0006 35.1 7.5 35 44-78 179-213 (259)
471 PRK10476 multidrug resistance 63.0 1.8E+02 0.0039 29.6 15.6 32 42-73 83-114 (346)
472 PF07544 Med9: RNA polymerase 62.9 28 0.0006 28.9 6.3 50 43-92 26-78 (83)
473 PLN03229 acetyl-coenzyme A car 62.9 1.2E+02 0.0027 34.9 13.1 9 70-78 597-605 (762)
474 PF15456 Uds1: Up-regulated Du 62.7 1.2E+02 0.0025 27.3 11.3 37 123-160 22-58 (124)
475 PF05008 V-SNARE: Vesicle tran 62.5 78 0.0017 25.2 10.0 70 90-165 6-75 (79)
476 PF07851 TMPIT: TMPIT-like pro 62.4 61 0.0013 33.9 10.0 28 353-380 217-244 (330)
477 TIGR00414 serS seryl-tRNA synt 62.2 85 0.0018 33.5 11.4 20 364-383 298-317 (418)
478 PF09325 Vps5: Vps5 C terminal 62.2 1.4E+02 0.0031 28.2 17.5 26 45-70 24-49 (236)
479 COG3524 KpsE Capsule polysacch 62.1 1E+02 0.0022 32.2 11.2 107 79-188 159-274 (372)
480 KOG3990 Uncharacterized conser 62.0 53 0.0011 33.2 9.0 40 39-78 219-258 (305)
481 PF14257 DUF4349: Domain of un 62.0 47 0.001 32.7 8.8 69 100-168 123-193 (262)
482 PRK13729 conjugal transfer pil 61.9 33 0.00072 37.4 8.2 60 114-173 67-126 (475)
483 KOG2264 Exostosin EXT1L [Signa 61.8 70 0.0015 35.9 10.6 70 118-187 81-150 (907)
484 PF10046 BLOC1_2: Biogenesis o 61.8 1E+02 0.0022 26.3 12.8 91 86-177 6-99 (99)
485 COG2900 SlyX Uncharacterized p 61.6 39 0.00086 27.8 6.7 53 49-101 5-57 (72)
486 PRK05431 seryl-tRNA synthetase 61.6 80 0.0017 33.8 11.1 97 46-149 3-99 (425)
487 KOG0249 LAR-interacting protei 61.5 2.7E+02 0.0059 32.3 15.2 146 53-202 136-281 (916)
488 KOG3850 Predicted membrane pro 61.5 2.4E+02 0.0051 30.4 20.8 179 41-318 263-444 (455)
489 PF10458 Val_tRNA-synt_C: Valy 61.2 47 0.001 26.2 7.1 59 78-136 2-66 (66)
490 TIGR02971 heterocyst_DevB ABC 61.2 1.8E+02 0.004 29.1 16.6 137 43-182 60-203 (327)
491 PRK08147 flgK flagellar hook-a 61.2 2.1E+02 0.0046 31.4 14.5 109 69-177 86-209 (547)
492 PRK06799 flgK flagellar hook-a 61.1 2E+02 0.0044 30.8 14.0 109 69-177 89-209 (431)
493 PRK07739 flgK flagellar hook-a 61.0 1.9E+02 0.004 31.7 14.0 109 69-177 96-218 (507)
494 COG3352 FlaC Putative archaeal 60.8 1.2E+02 0.0026 28.5 10.5 98 45-142 44-141 (157)
495 TIGR00237 xseA exodeoxyribonuc 60.8 1.9E+02 0.0041 31.0 13.7 150 21-170 231-386 (432)
496 PF04100 Vps53_N: Vps53-like, 60.7 1.7E+02 0.0036 31.0 13.2 96 72-167 17-115 (383)
497 KOG2129 Uncharacterized conser 60.7 2.5E+02 0.0055 30.5 15.5 119 47-180 181-308 (552)
498 PF01496 V_ATPase_I: V-type AT 60.3 2.9 6.2E-05 47.6 0.0 106 60-165 11-116 (759)
499 COG3524 KpsE Capsule polysacch 59.7 2.1E+02 0.0046 30.0 13.0 150 44-200 151-305 (372)
500 PF15066 CAGE1: Cancer-associa 59.7 2.7E+02 0.0059 30.6 18.8 150 50-199 343-494 (527)
No 1
>PRK11637 AmiB activator; Provisional
Probab=98.66 E-value=9.9e-06 Score=85.08 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
++.+.....++...+.+++....+++..+.+++....+|+....+++..+++++..++
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~ 229 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQ 229 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556666666666666666666666666666666666666666665555
No 2
>PRK09039 hypothetical protein; Validated
Probab=98.49 E-value=2.1e-05 Score=80.90 Aligned_cols=162 Identities=22% Similarity=0.268 Sum_probs=119.7
Q ss_pred hhhhHHHHHHHHHHHHhhhhccCCCCCCCccCccCCCCchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHH
Q 013531 4 SKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQ 83 (441)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ 83 (441)
+-||+..+|++.||..+.+ -+..++..++.+|++|+++|.++..-+.-........+..|.
T Consensus 24 ~~ll~~~~f~l~~f~~~q~-------------------fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~ 84 (343)
T PRK09039 24 STLLLVIMFLLTVFVVAQF-------------------FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVA 84 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4566666666656655333 234567777888888888888877666666666666676666
Q ss_pred HHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 84 DKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 84 ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeL 163 (441)
+....+..++..-+.|+.-.... ......++.++..|..++..++....+...++..|..+...++.++..++..++.+
T Consensus 85 ~l~~~l~~a~~~r~~Le~~~~~~-~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 85 NLRASLSAAEAERSRLQALLAEL-AGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665322111 11123567888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013531 164 QKINDEQKSKIRKTERALKEEM 185 (441)
Q Consensus 164 ek~~aEQk~qIeelEk~lkeei 185 (441)
+....+++.+|++++..+..-+
T Consensus 164 e~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 164 EKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888544
No 3
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.15 E-value=0.00037 Score=63.54 Aligned_cols=132 Identities=24% Similarity=0.361 Sum_probs=76.2
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhh--HHhhHHHHHHHHHH
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN--AAEQVDKAHARADE 120 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~--~~~~~~~a~~~~~e 120 (441)
++.|.+....+..+++.++..++++... +|..|..+.+++..++.+|..++..-... .-+.+.+...++..
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~-------~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~ 77 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQ-------KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQ 77 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Confidence 4445555555556666666655555555 55555555566666666666665322111 11222233333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~l 181 (441)
|+..|..|+.+++..+........+..++......++.++..|+......+.++++++...
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6677777777777777777666666666666666666666666666666666666665543
No 4
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.12 E-value=0.00063 Score=67.79 Aligned_cols=138 Identities=20% Similarity=0.297 Sum_probs=83.8
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhhchhh-------
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL-----------QKKETLN------- 106 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL-----------q~~~~~~------- 106 (441)
.+...+..+|..|..+|+++.+++++.+.++.+....|.+..+.|..+...|... |..|+..
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil 124 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVIL 124 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 3334466666777777777777777777777666666666667776666666544 4434332
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 013531 107 AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS-------AKLEKLQKINDEQKSKIRKTER 179 (441)
Q Consensus 107 ~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELe-------kklEeLek~~aEQk~qIeelEk 179 (441)
..+..+..-.|+..+..-|+-=++.++++..+...|+.....+++..+.+. ..+.+|+..+.+++..+..+..
T Consensus 125 ~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa 204 (265)
T COG3883 125 NSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAA 204 (265)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455666677777776666677777777777777777777666655444 4444444444444444444444
Q ss_pred HHH
Q 013531 180 ALK 182 (441)
Q Consensus 180 ~lk 182 (441)
...
T Consensus 205 ~~a 207 (265)
T COG3883 205 KEA 207 (265)
T ss_pred HHH
Confidence 333
No 5
>PRK11637 AmiB activator; Provisional
Probab=97.99 E-value=0.0013 Score=69.23 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 124 eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
....|+....+++....+++..+.+++....+.+..+..|+....++...+.++++..+
T Consensus 185 ~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~ 243 (428)
T PRK11637 185 QKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANES 243 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444455555555555455555566555555555555555444
No 6
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.83 E-value=0.0032 Score=57.47 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhHHHH
Q 013531 49 QLKSKIRSLESHIDEK 64 (441)
Q Consensus 49 ~l~~~i~~Les~i~~~ 64 (441)
.||.+......+.+++
T Consensus 4 ~lk~E~d~a~~r~e~~ 19 (143)
T PF12718_consen 4 ALKLEADNAQDRAEEL 19 (143)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3444444444444443
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.81 E-value=0.0028 Score=73.08 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIE 148 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~e 148 (441)
+.+++.++..++.++..+..++..++.+...
T Consensus 800 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 830 (1164)
T TIGR02169 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333333
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.75 E-value=0.0041 Score=71.73 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=11.0
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
.++..++.++..++..+..+.+++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~l~~ 319 (1164)
T TIGR02169 294 EKIGELEAEIASLERSIAEKERELED 319 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 9
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.65 E-value=0.013 Score=57.77 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKEEMMRAKFEATSRS 196 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lkeei~k~k~E~~~kA 196 (441)
....|+-+++.++..+..++.++..+..+...+ +.++..+......++..+.+++..+..++..+..+...-.
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l-------~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~ 162 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKL-------EKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELS 162 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444444444444444444444 4444444444444444444444444433332222222111
Q ss_pred hhHHHhhhccCChhHHHHHHhhh
Q 013531 197 KELTEVHSAWLPPWLAVHLLQCQ 219 (441)
Q Consensus 197 k~l~e~h~~wlppw~a~~~~~~q 219 (441)
.+-.+ --.=+||=|...+.+..
T Consensus 163 ~~~~~-L~~~l~~ell~~yeri~ 184 (239)
T COG1579 163 SKREE-LKEKLDPELLSEYERIR 184 (239)
T ss_pred HHHHH-HHHhcCHHHHHHHHHHH
Confidence 11111 11236776666666655
No 10
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.63 E-value=0.0094 Score=62.96 Aligned_cols=133 Identities=19% Similarity=0.265 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---hhhHHhhHHHH------------
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE---TLNAAEQVDKA------------ 114 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~---~~~~~~~~~~a------------ 114 (441)
-+.+.++|++.|..++.+|+.-+..|..-++.+.+.++.|.++...|.-|+..- ..-..+++..+
T Consensus 57 ~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll 136 (420)
T COG4942 57 QQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALL 136 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhh
Confidence 334445666667777777777777777777777777777777777777776432 00001111111
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 ----------------HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (441)
Q Consensus 115 ----------------~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelE 178 (441)
.+=+.++-.+++.|......+......++++..++...+.+...+...|.....+++....+++
T Consensus 137 ~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~ 216 (420)
T COG4942 137 VSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN 216 (420)
T ss_pred cChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0113445556888888888888888888888888888888888888888888888888888888
Q ss_pred HHHH
Q 013531 179 RALK 182 (441)
Q Consensus 179 k~lk 182 (441)
..+.
T Consensus 217 ~~l~ 220 (420)
T COG4942 217 SELS 220 (420)
T ss_pred HHHH
Confidence 8887
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.56 E-value=0.011 Score=68.02 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=4.8
Q ss_pred hHHHHHHHHHHHH
Q 013531 46 ELDQLKSKIRSLE 58 (441)
Q Consensus 46 el~~l~~~i~~Le 58 (441)
++..+..++..++
T Consensus 699 ~~~~~~~~l~~l~ 711 (1179)
T TIGR02168 699 ALAELRKELEELE 711 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 12
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.52 E-value=0.017 Score=57.07 Aligned_cols=110 Identities=18% Similarity=0.319 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 78 KEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNL--KKESEKQQKEKEALEARAIEAEKKISD 155 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~L--kkeie~~ek~~eeLEark~eLEkkleE 155 (441)
....+....+.+.+++.++..|++..+.. +.-+.+.++|...++...... .++.++++.++..++.+...++..+.+
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~-e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQL-ESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443322221 122344445555555554444 456666677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 156 LSAKLEKLQKINDEQKSKIRKTERALKEEMMRA 188 (441)
Q Consensus 156 LekklEeLek~~aEQk~qIeelEk~lkeei~k~ 188 (441)
+...++.+++.....+..+..+++.+.+.-.+.
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~ 147 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARL 147 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777666443333
No 13
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.51 E-value=0.027 Score=63.27 Aligned_cols=140 Identities=22% Similarity=0.314 Sum_probs=81.3
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhH----------
Q 013531 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQV---------- 111 (441)
Q Consensus 42 ~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~---------- 111 (441)
.++.||++|+.+..+|+.++..+++....=.+.+.++|+-+.+--..=..++..+...++..-. .++.+
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~-ee~~aar~~~~~~~~ 535 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKE-EEEKAARALAQAQAT 535 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHhhhhccccchhc
Confidence 4566777777777777777777777666666667777777777766667777776666543211 11111
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 112 -----DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 112 -----~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
.....|..+||.++..|+.++..-++++..+|.+..++.....+-+...+.|-......+.+-..+|..+.
T Consensus 536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11233556666666666666666666666666665544433222333444444555555555555555555
No 14
>PRK09039 hypothetical protein; Validated
Probab=97.42 E-value=0.041 Score=56.91 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=7.5
Q ss_pred HhHHHHHHHHHHHH
Q 013531 45 IELDQLKSKIRSLE 58 (441)
Q Consensus 45 ~el~~l~~~i~~Le 58 (441)
.+|++|..+|++|=
T Consensus 53 ~eL~~L~~qIa~L~ 66 (343)
T PRK09039 53 SALDRLNSQIAELA 66 (343)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555543
No 15
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=0.088 Score=52.77 Aligned_cols=136 Identities=18% Similarity=0.286 Sum_probs=96.2
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHH-------
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHAR------- 117 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~------- 117 (441)
.++..+......++.+|+.+-.+|.+-...+..+++.|.+....|..++++|..|.+.+.. ...+.+-.+|
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~--r~~~l~~raRAmq~nG~ 115 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE--RQELLKKRARAMQVNGT 115 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC
Confidence 4556666666666666666666666666666666666666666666666666666443322 1222222222
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 -------------ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 118 -------------~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
.+++-.+|.-+...++.-..-++.+..+...++.....++.+++.|.....+.+.+.++++....
T Consensus 116 ~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~ 193 (265)
T COG3883 116 ATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKA 193 (265)
T ss_pred hhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777888888888888888899999999999999999999999999999988888777
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.37 E-value=0.027 Score=60.63 Aligned_cols=50 Identities=14% Similarity=0.239 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
+..++..|+..|..+..++..-++.|+..+..+...+..+..++..+..+
T Consensus 232 l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 232 IKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444445555555555555555555555555555
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=97.34 E-value=0.025 Score=64.37 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 132 SEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (441)
Q Consensus 132 ie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk 179 (441)
++++..++.+++++..+++..+.+++...+++.....+.+.++++++.
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~ 641 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEA 641 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444445555555555443
No 18
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=97.29 E-value=0.0046 Score=58.67 Aligned_cols=112 Identities=24% Similarity=0.336 Sum_probs=51.0
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHH
Q 013531 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (441)
Q Consensus 42 ~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eL 121 (441)
.+...+..++.++..+...-.++.+.|...+..+..++..+.+++..|.++..++..|+ .++..|
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~---------------~~~~~l 135 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLE---------------EKIKDL 135 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 34455566778888887888888888888888888888888888888888888888887 245666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (441)
Q Consensus 122 e~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~a 168 (441)
+.++....+.++.+++++..|.-..+.+|.+...++.+-.+|-+.--
T Consensus 136 ~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 136 EEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777766666654433
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.18 E-value=0.049 Score=64.40 Aligned_cols=19 Identities=42% Similarity=0.688 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhHHHHhhhh
Q 013531 50 LKSKIRSLESHIDEKTQEL 68 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i 68 (441)
++.++.+++..+.+++..+
T Consensus 693 ~~~~~~~~~~~~~~~~~~~ 711 (1163)
T COG1196 693 LKNELRSLEDLLEELRRQL 711 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.16 E-value=0.053 Score=64.13 Aligned_cols=9 Identities=11% Similarity=0.268 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 013531 368 QVQASVQEM 376 (441)
Q Consensus 368 q~Q~~v~~~ 376 (441)
+++...+..
T Consensus 1021 ~F~~if~~L 1029 (1163)
T COG1196 1021 NFSEIFKEL 1029 (1163)
T ss_pred HHHHHHHHh
Confidence 344333333
No 21
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.16 E-value=0.43 Score=55.53 Aligned_cols=63 Identities=6% Similarity=0.169 Sum_probs=44.5
Q ss_pred hhHHHHHHhhcCcchHhHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcc
Q 013531 323 KPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKFLKSATTYHHQVQASVQEMLKKHELTSPLAT 388 (441)
Q Consensus 323 ~py~~qa~~~skP~vdkv~~~~~Py~e~v~~~~k~~~~~a~~~H~q~Q~~v~~~l~~~e~~~~~at 388 (441)
+......++.+..-++.+..-+-|+...+...+..++..+..+...+|+.++ .+-+++.-+++
T Consensus 638 q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~---~q~~~~~l~~~ 700 (1041)
T KOG0243|consen 638 QQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLS---NQQEILSLFAN 700 (1041)
T ss_pred HHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHhhH
Confidence 3333444444555556677777788888999999999999999999998877 34455555555
No 22
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.13 E-value=0.23 Score=51.03 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=19.7
Q ss_pred CchhHhHHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 41 SPLKIELDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 41 ~~~~~el~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
..+..++.+++.++.+|+..+..+...+..
T Consensus 77 ~~~~~~l~~l~~~~~~l~a~~~~l~~~~~~ 106 (423)
T TIGR01843 77 TDVEADAAELESQVLRLEAEVARLRAEADS 106 (423)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334567777778887777777665555544
No 23
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.12 E-value=0.047 Score=53.36 Aligned_cols=103 Identities=23% Similarity=0.396 Sum_probs=41.8
Q ss_pred HHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (441)
Q Consensus 54 i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie 133 (441)
|.+|+..|+..+..+..-...|+..++.....+..+.+|+..|..|.. ..-..++....+..++.+++...+.......
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~-~le~~eerL~~~~~kL~~~e~~~de~er~~k 81 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEE-ELERAEERLEEATEKLEEAEKRADESERARK 81 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444555555555555531 1112222233333344444444444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 134 KQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 134 ~~ek~~eeLEark~eLEkkleELe 157 (441)
.++.+....+.+...++.++.++.
T Consensus 82 ~lE~r~~~~eeri~~lE~~l~ea~ 105 (237)
T PF00261_consen 82 VLENREQSDEERIEELEQQLKEAK 105 (237)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 24
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.11 E-value=0.069 Score=52.22 Aligned_cols=77 Identities=22% Similarity=0.381 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lk 129 (441)
|..+....+.+|..++.+++.-.......+.-..+-+.++..++.++.-. ++.+..++.++.+|+.++..+.
T Consensus 83 lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~a--------EeR~e~~E~ki~eLE~el~~~~ 154 (237)
T PF00261_consen 83 LENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERA--------EERAEAAESKIKELEEELKSVG 154 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhhchhHHHHHHHHHHHH
Confidence 33444444455555555555444444444444444444444444443332 3444455555555555555544
Q ss_pred HHHHH
Q 013531 130 KESEK 134 (441)
Q Consensus 130 keie~ 134 (441)
..+..
T Consensus 155 ~~lk~ 159 (237)
T PF00261_consen 155 NNLKS 159 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 25
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=0.91 Score=52.66 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=21.5
Q ss_pred HHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013531 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSER 88 (441)
Q Consensus 53 ~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~ 88 (441)
.+..+.+.|.+.+++|+++..-++++++.|...++.
T Consensus 742 ~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~ 777 (1174)
T KOG0933|consen 742 DLKELLEEVEESEQQIKEKERALKKCEDKISTLEKK 777 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666677777666666666666444433
No 26
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.09 E-value=0.032 Score=60.00 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=8.1
Q ss_pred hHhHHHHHHHHHHHHhhHH
Q 013531 44 KIELDQLKSKIRSLESHID 62 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~ 62 (441)
..+++.++.++..++.+|.
T Consensus 180 ~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 180 NQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 27
>PRK02224 chromosome segregation protein; Provisional
Probab=97.08 E-value=0.054 Score=61.73 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=3.4
Q ss_pred hhhhccCC
Q 013531 224 THWNAHGK 231 (441)
Q Consensus 224 ~~w~~hg~ 231 (441)
+.|..=|.
T Consensus 452 ~~Cp~C~r 459 (880)
T PRK02224 452 GKCPECGQ 459 (880)
T ss_pred ccCCCCCC
Confidence 44444443
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.03 E-value=0.13 Score=56.21 Aligned_cols=79 Identities=27% Similarity=0.433 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lk 129 (441)
|..+..+|+..|+.+..++....++..++....+++......+..+..+|. .+-.++.+++.+|+..+..|.
T Consensus 162 Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~--------~q~~e~~~ri~~LEedi~~l~ 233 (546)
T PF07888_consen 162 LEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLK--------EQLAEARQRIRELEEDIKTLT 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555555555555554 223445666667776666665
Q ss_pred HHHHHHH
Q 013531 130 KESEKQQ 136 (441)
Q Consensus 130 keie~~e 136 (441)
......+
T Consensus 234 qk~~E~e 240 (546)
T PF07888_consen 234 QKEKEQE 240 (546)
T ss_pred HHHHHHH
Confidence 5443333
No 29
>PRK03918 chromosome segregation protein; Provisional
Probab=96.97 E-value=0.22 Score=56.58 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhHHHHhhh
Q 013531 50 LKSKIRSLESHIDEKTQE 67 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~ 67 (441)
++.++..++..+.+++.+
T Consensus 530 l~~~~~~l~~~l~~l~~~ 547 (880)
T PRK03918 530 LKEKLIKLKGEIKSLKKE 547 (880)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 333444444434433333
No 30
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.95 E-value=0.06 Score=62.33 Aligned_cols=132 Identities=20% Similarity=0.366 Sum_probs=71.3
Q ss_pred HHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hchhhHHhhHHHHHHHHHHHHHH
Q 013531 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK------KETLNAAEQVDKAHARADELEKQ 124 (441)
Q Consensus 51 ~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~------~~~~~~~~~~~~a~~~~~eLe~e 124 (441)
..+++.|..+|+.....+.+-++.+.+++..|+++.......-.||..+.. ..-.+.+.....++.++.++.+.
T Consensus 294 qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~ 373 (1074)
T KOG0250|consen 294 QEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKE 373 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444555555555444444444444421 11233444455555556666666
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQKEK-EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~-eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
++.|+++|.+.+++. ..+..++.+.+.+++.|+.+++.++.....+...+++...++.
T Consensus 374 ~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 374 VDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665 5666666666666666666666666666666666666555554
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.91 E-value=0.3 Score=56.79 Aligned_cols=59 Identities=27% Similarity=0.388 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 124 QIDNLKKESEKQQKEKEALEARA-IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 124 eVe~Lkkeie~~ek~~eeLEark-~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
.+..+++.++.+++.+..++.+- +++..++.+.+.+++.|+..++..+..+..+...++
T Consensus 366 ~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~ 425 (1074)
T KOG0250|consen 366 SIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELN 425 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444 334444444445555555555444444444444444
No 32
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.88 E-value=0.25 Score=47.45 Aligned_cols=130 Identities=20% Similarity=0.327 Sum_probs=80.3
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHH
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKGKDE-------VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHA 116 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~k~~-------~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~ 116 (441)
...+..|+.+|..|+.+|.++..|-+.-.. .|...|+.=.+..+.|....+||-.|+ ++..++..
T Consensus 11 ~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr--------~~LR~~q~ 82 (194)
T PF15619_consen 11 LHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLR--------ERLRKSQE 82 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 345566777777777777777666554333 334444444778888888888888886 33444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIE--AEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~e--LEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+..+++..+.....++...+..+..|..-..+ +.. .++|..+++.++....+....|..+++.++
T Consensus 83 ~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~e-ReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 83 QERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAE-REELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555544443322 222 366777777777777777777777777766
No 33
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.88 E-value=0.089 Score=53.81 Aligned_cols=117 Identities=21% Similarity=0.318 Sum_probs=70.2
Q ss_pred HHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 55 RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEK 134 (441)
Q Consensus 55 ~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~ 134 (441)
..|+..++.+.++...-+..+...+..+.+....-..|..++..|+....-.. ..=..++..++.++.+
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~-----------~~D~~eL~~lr~eL~~ 220 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIE-----------SCDQEELEALRQELAE 220 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hcCHHHHHHHHHHHHH
Confidence 44455555555555555555555666666666666666677776663221000 0001345666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 135 QQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 135 ~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+..+++.......+++.++..++..++++...+.+...+|+++++...
T Consensus 221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 221 QKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666667777777777777777777777777777776665
No 34
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.79 E-value=0.098 Score=48.90 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~e 136 (441)
..++++..++..+..+.+++.++.
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 35
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.77 E-value=0.53 Score=57.29 Aligned_cols=132 Identities=18% Similarity=0.283 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhH-----HhhHHHHHHHHHH
Q 013531 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNA-----AEQVDKAHARADE 120 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~-----~~~~~~a~~~~~e 120 (441)
|.-.+=.++...+.+..+-.+.|...+..+...++++.+.+..+..|+.++.....-..... ..........+.+
T Consensus 280 ERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeE 359 (1486)
T PRK04863 280 ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEE 359 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334455556666666666666666777777777777777777777776654322211 1222233333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeel 177 (441)
|+.++++....++....++..++.+...++.++++++.++.+++.....++.++.++
T Consensus 360 Lee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~ 416 (1486)
T PRK04863 360 LEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQY 416 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444433333333333333333
No 36
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.74 E-value=0.052 Score=61.60 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=77.1
Q ss_pred CchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHH
Q 013531 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (441)
Q Consensus 41 ~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~e 120 (441)
.+-......|..++..|++....++..+.+-++.|+.....+.|.+..|.+|+.++.+++ +-.+..+.|...-.+....
T Consensus 585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~k-eS~s~~E~ql~~~~e~~e~ 663 (769)
T PF05911_consen 585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAK-ESNSLAETQLKAMKESYES 663 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 334555667888999999999999999999999999999999999999999999999885 4445556655555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIE 148 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~e 148 (441)
|+.+...++.++..+..++..|+.+...
T Consensus 664 le~~~~~~e~E~~~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 664 LETRLKDLEAEAEELQSKISSLEEELEK 691 (769)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555544333
No 37
>PRK03918 chromosome segregation protein; Provisional
Probab=96.71 E-value=0.25 Score=56.23 Aligned_cols=13 Identities=8% Similarity=0.110 Sum_probs=6.8
Q ss_pred hhhhccCCchHHH
Q 013531 224 THWNAHGKPAMDV 236 (441)
Q Consensus 224 ~~w~~hg~p~~~~ 236 (441)
+.|-.||.|.-+.
T Consensus 436 ~~Cp~c~~~L~~~ 448 (880)
T PRK03918 436 GKCPVCGRELTEE 448 (880)
T ss_pred CCCCCCCCcCCch
Confidence 4455566665443
No 38
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.65 E-value=2.1 Score=51.59 Aligned_cols=51 Identities=31% Similarity=0.403 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+..++..+++.|+++...++..++.+..+.+.+......|.+++.++..+.
T Consensus 417 ~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~ 467 (1311)
T TIGR00606 417 LQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLE 467 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444555566666666666666666666666666666666666666665543
No 39
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.63 E-value=0.17 Score=51.92 Aligned_cols=112 Identities=22% Similarity=0.313 Sum_probs=70.0
Q ss_pred HHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHH----HHHHHHHHH
Q 013531 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE----KQIDNLKKE 131 (441)
Q Consensus 56 ~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe----~eVe~Lkke 131 (441)
.|+..++.+.++-..-+..+...+.++.+....-..|..++..|+.- ..+++ +++..++..
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~---------------~~e~~~~d~~eL~~lk~~ 212 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQL---------------EDELEDCDPTELDRAKEK 212 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------HHHHHhCCHHHHHHHHHH
Confidence 33444444444444444444445555555556666666666666521 22221 356666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 132 SEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 132 ie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+..+..++........+++.++.+++..+++....+.+...+|+++++...
T Consensus 213 l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 213 LKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666667666777777777888888888888888888888888888776
No 40
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.58 E-value=0.25 Score=50.75 Aligned_cols=6 Identities=33% Similarity=0.761 Sum_probs=2.6
Q ss_pred CCchHH
Q 013531 230 GKPAMD 235 (441)
Q Consensus 230 g~p~~~ 235 (441)
|.|++.
T Consensus 297 g~~l~~ 302 (423)
T TIGR01843 297 GETLME 302 (423)
T ss_pred CCeeEE
Confidence 444443
No 41
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.57 E-value=2.2 Score=51.04 Aligned_cols=35 Identities=9% Similarity=0.219 Sum_probs=20.2
Q ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 341 RVALKPYTKKVVRAYGKFLKSATTYHHQVQASVQE 375 (441)
Q Consensus 341 ~~~~~Py~e~v~~~~k~~~~~a~~~H~q~Q~~v~~ 375 (441)
+..+.=....+...+..|+..-..+++.++.+.++
T Consensus 980 ~~~l~e~~~~~~~~i~~f~~~l~~~~r~I~~~s~~ 1014 (1201)
T PF12128_consen 980 QQALIEQGRNIGNDISNFYGVLEDFDRRIKSQSRR 1014 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33334444455556666666667777777666444
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.55 E-value=0.054 Score=60.99 Aligned_cols=104 Identities=24% Similarity=0.308 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHH
Q 013531 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK-------SERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek-------~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~e 120 (441)
+++|.+..+||++|..+..|++.|++.+...|..+++. ++.+..|.+.++.||
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amq-------------------- 600 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQ-------------------- 600 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------------------
Confidence 45899999999999999999999888888887776422 234566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSK 173 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~q 173 (441)
+.-.-|++-+..-..=+-+|-+-..+...+++.++..+..-++++.+++.+
T Consensus 601 --dk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 601 --DKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred --HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555554444444444444433333333333
No 43
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.55 E-value=0.26 Score=60.77 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 148 eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
.+..++++.+..+..+++.+.++..+|.++...++
T Consensus 1080 ~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le 1114 (1930)
T KOG0161|consen 1080 QLQSKLEDEQAEVAQLQKQIKELEARIKELEEELE 1114 (1930)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555555555554
No 44
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.54 E-value=0.24 Score=61.04 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHH
Q 013531 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (441)
Q Consensus 49 ~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek 85 (441)
.|+.....|++.+++++..+.........+|+.+..+
T Consensus 1010 ~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkl 1046 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKL 1046 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333333
No 45
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.52 E-value=0.029 Score=53.18 Aligned_cols=59 Identities=20% Similarity=0.360 Sum_probs=11.1
Q ss_pred CchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 41 ~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
..+..||..+...-++|..++..++.++..++..+..++..|.+....+..|+.+|..|
T Consensus 77 ~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l 135 (194)
T PF08614_consen 77 AKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDL 135 (194)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554444555555555555555555555555555555555555555555444
No 46
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.52 E-value=0.44 Score=55.88 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=26.7
Q ss_pred HHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 54 i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+..+.++|..++.+|..-..++...++..+..+..|+.++.+|..|+
T Consensus 407 lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~ 453 (1293)
T KOG0996|consen 407 LKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLE 453 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHH
Confidence 33344445555555555455555555555556666666777777665
No 47
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.49 E-value=0.58 Score=51.30 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERI 89 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I 89 (441)
.+...++.+|.+|+..|..+++...+.+..+.+..+...+++...
T Consensus 213 ~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~ 257 (546)
T PF07888_consen 213 EQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLE 257 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666666666666666555555555544444444444
No 48
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=0.11 Score=60.71 Aligned_cols=161 Identities=24% Similarity=0.382 Sum_probs=101.8
Q ss_pred CchhHhHHHH-----H-HHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHH
Q 013531 41 SPLKIELDQL-----K-SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKA 114 (441)
Q Consensus 41 ~~~~~el~~l-----~-~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a 114 (441)
..+..|++++ + .+|.+|.++|..+. ...++...+-|......|.-+.++|..++.. ...+..-+.++
T Consensus 868 e~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~------~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~-i~~s~~~i~k~ 940 (1293)
T KOG0996|consen 868 EELKKEVEELQEKAAKKARIKELQNKIDEIG------GEKVQAQKDKVEKINEQLDKLEADIAKLTVA-IKTSDRNIAKA 940 (1293)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh------chhhHHhHHHHHHHHHHHHHHHHHHHHhHHH-HhcCcccHHHH
Confidence 4567777777 4 88888888888873 3445555666777777777788888777532 33344556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK---EEMMRAKFE 191 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk---eei~k~k~E 191 (441)
+..+.+|+..++.++++++.+..+...++.+..+++....+...-+.++.+.....+..++...+... .+..-++..
T Consensus 941 q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K 1020 (1293)
T KOG0996|consen 941 QKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENK 1020 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 77788888888888777777777777777777777776666666665555555555555555444443 111112222
Q ss_pred hhhhhhhHHHhhhccCC
Q 013531 192 ATSRSKELTEVHSAWLP 208 (441)
Q Consensus 192 ~~~kAk~l~e~h~~wlp 208 (441)
..+-..++.|+-..|--
T Consensus 1021 ~e~~~~~l~e~~~~~~~ 1037 (1293)
T KOG0996|consen 1021 LEAINGELNEIESKIKQ 1037 (1293)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 22334556665555544
No 49
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.47 E-value=0.5 Score=45.43 Aligned_cols=99 Identities=23% Similarity=0.332 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHH
Q 013531 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNL 128 (441)
Q Consensus 49 ~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~L 128 (441)
.|+.+|.+++.+....++.+.+-..+.+.+-.-+......+.+|+..+...++. ......+.+++..+++++..|
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd-----K~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD-----KQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555555555555555555554421 112225567888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 129 KKESEKQQKEKEALEARAIEAEKK 152 (441)
Q Consensus 129 kkeie~~ek~~eeLEark~eLEkk 152 (441)
+-+-+.+..+...++.++.++..+
T Consensus 106 k~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 106 KWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877765
No 50
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.44 E-value=0.27 Score=54.50 Aligned_cols=57 Identities=28% Similarity=0.387 Sum_probs=43.9
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
-..|++.|+.+|..|++.|.+++.+++.-...+++.+..+.+......++++++...
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888888888888877777777777777777777777777644
No 51
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=96.44 E-value=0.15 Score=45.43 Aligned_cols=48 Identities=23% Similarity=0.402 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKI 166 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~ 166 (441)
....+++..|+.++.+++.+.+.+-.-..+-..++++|...+.++...
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 334456666666666666666666666666666666666666655443
No 52
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.43 E-value=0.49 Score=42.32 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKI 174 (441)
Q Consensus 141 eLEark~eLEkkleELekklEeLek~~aEQk~qI 174 (441)
..+.++..+++.+.+++.++++|...+.-+=.+|
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666665555444433
No 53
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.43 E-value=0.28 Score=58.94 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 112 DKAHARADELEKQIDNLKKESEKQQKEKEAL 142 (441)
Q Consensus 112 ~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeL 142 (441)
...+..+..+...++.+..+.++.+.++..|
T Consensus 832 ~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 832 QEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444
No 54
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.37 E-value=1.2 Score=44.74 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 116 ~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
.....|+-+++.++.++++...+.+........++..+..+.+.+++..-.....+.++..+...+.
T Consensus 68 ~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 68 KEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555555555555555555555555554
No 55
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.36 E-value=0.25 Score=55.01 Aligned_cols=115 Identities=23% Similarity=0.340 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhh----------HHhhHHHHHHHH
Q 013531 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN----------AAEQVDKAHARA 118 (441)
Q Consensus 49 ~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~----------~~~~~~~a~~~~ 118 (441)
+|..++..|+..++.+..++......-..+...+.+.+..|.+++..+..++... .+ ....++.|-++.
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~-~D~~kLLe~lqsdk~t~SRAlsQN 162 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ-EDRQKLLEQLQSDKATASRALSQN 162 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcccchHHHHHHHhH
Confidence 3555555555555555555544444444444444455555555554444443211 11 123466788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
.+|..++.+|+.....+.+++.++.+....-.-...+|..++.+++
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~ 208 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQ 208 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888888886666555443333333333333333
No 56
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.44 Score=53.86 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
||..|+-++.+|.-+|.+..-.|.....+|....+.+.-.-..|..|+..|.-+|
T Consensus 445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444434444444444444333333333344444444433
No 57
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.31 E-value=0.72 Score=42.26 Aligned_cols=57 Identities=16% Similarity=0.352 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (441)
Q Consensus 123 ~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk 179 (441)
.+++.+-..+.++..+...+-+++..+.+...+.+.++.+|+....+....|...+.
T Consensus 59 ~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 59 EELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444443
No 58
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.28 E-value=0.18 Score=47.05 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALE 143 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLE 143 (441)
....+++++.++....+..++..++.
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 59
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.11 E-value=0.97 Score=51.78 Aligned_cols=103 Identities=15% Similarity=0.254 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhHHHHhhhh---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhh-------HHHHHHHH
Q 013531 49 QLKSKIRSLESHIDEKTQEL---KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQ-------VDKAHARA 118 (441)
Q Consensus 49 ~l~~~i~~Les~i~~~~~~i---~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~-------~~~a~~~~ 118 (441)
+||.++++|+..-..+++-. .+........++.++..-.++..+.++=.-|-.+. -+-.+| ..+.....
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~-~di~kQle~~~~s~~~~~~~~ 468 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKY-DDIQKQLESAEQSIDDVEEEN 468 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHH
Confidence 45555555554444444333 33333333444444444444444444433321111 111222 22455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKK 152 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkk 152 (441)
++|+.++++++.+....+.+.+.+......++.+
T Consensus 469 ~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~E 502 (980)
T KOG0980|consen 469 TNLNDQLEELQRAAGRAETKTESQAKALESLRQE 502 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666666665555444444444443333333
No 60
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=0.62 Score=52.73 Aligned_cols=56 Identities=14% Similarity=0.283 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013531 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (441)
Q Consensus 47 l~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~ 102 (441)
..+|..++..|+-++.+++..|-.-.-.+.+-...|.+..+.+..+-+||.-||..
T Consensus 439 ~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqar 494 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQAR 494 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33444445555555555444444444444444455555555555566666655543
No 61
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=96.07 E-value=0.35 Score=43.12 Aligned_cols=41 Identities=20% Similarity=0.430 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 013531 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK--EEMMRA 188 (441)
Q Consensus 148 eLEkkleELekklEeLek~~aEQk~qIeelEk~lk--eei~k~ 188 (441)
.++.++.+++.+.+.+=...-+.....++++.++. .+|.+.
T Consensus 72 ~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555 444443
No 62
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.06 E-value=1.5 Score=46.72 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=31.5
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
.++++.+.+|.+++++|....++...-...|+..+..|...+..|...+.++.-+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~ 93 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLR 93 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45666677777776666665555555455555555555555555544444444443
No 63
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.04 E-value=3.1 Score=45.79 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=11.5
Q ss_pred cchhHHHHhhhhhhH-HHHHHh
Q 013531 311 VDPYFQEAKKFSKPY-IDQVAT 331 (441)
Q Consensus 311 v~Py~~e~ke~~~py-~~qa~~ 331 (441)
|.-.+.+|...-+-| |++|-.
T Consensus 519 V~~~f~~Ae~lF~~~~Y~~al~ 540 (569)
T PRK04778 519 VAEALNEAERLFREYDYKAALE 540 (569)
T ss_pred HHHHHHHHHHHHHhCChHHHHH
Confidence 445555555555555 655544
No 64
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.04 E-value=0.34 Score=55.95 Aligned_cols=55 Identities=24% Similarity=0.322 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013531 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~ 102 (441)
..|.-+++.|+++|.-+.+++.+|.+.+..+.+.|..++..|..|.+++.-.+..
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~e 227 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDE 227 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888889999999999999999999999999999999999999999887754
No 65
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.99 E-value=5.3 Score=47.92 Aligned_cols=97 Identities=20% Similarity=0.348 Sum_probs=53.6
Q ss_pred CCchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------chhhHHhhHH
Q 013531 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK-------ETLNAAEQVD 112 (441)
Q Consensus 40 ~~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~-------~~~~~~~~~~ 112 (441)
...++.++.++...|..++...+++++.|+.....+......+..........+.++..|++. .....++...
T Consensus 602 ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 681 (1201)
T PF12128_consen 602 EEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKE 681 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667777777777777666666666666666666666555555555555445555544433 3333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~e 136 (441)
.++.++..++.++..++.++....
T Consensus 682 ~~~~~l~~l~~~l~~~~~e~~~~~ 705 (1201)
T PF12128_consen 682 QIEEQLNELEEELKQLKQELEELL 705 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444433
No 66
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.84 E-value=1.5 Score=43.32 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=30.5
Q ss_pred HHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 013531 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (441)
Q Consensus 56 ~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~ 103 (441)
.|++.|..++.++.+...-+......+...++.+.+|..++..|+.+.
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~ 68 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKA 68 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555566665555555566666777777777777777776443
No 67
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.74 E-value=0.31 Score=42.65 Aligned_cols=75 Identities=19% Similarity=0.318 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK-EEMMRAKFE 191 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk-eei~k~k~E 191 (441)
.-.+++.++..|+..++...-....|...+.+++..+..|+......++.+.+.+++|+++.+.+. +.+.+++.+
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~ 85 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELE 85 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666666665555566666666666666666666666666666666666 444444433
No 68
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.69 E-value=1.9 Score=41.24 Aligned_cols=114 Identities=21% Similarity=0.303 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHH
Q 013531 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN 127 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~ 127 (441)
..|+.-|..++..|....+.+..---.-...+..+.+.+..|...+.....--..| .++.+..|-.+...++.++..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g---~edLAr~al~~k~~~e~~~~~ 102 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG---REDLAREALQRKADLEEQAER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777776666666555555566666666666666665554333333 334445666667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 128 Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
|+.+++.+......|......++.++.++..+...+.
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776677666666666665554
No 69
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.64 E-value=5 Score=45.00 Aligned_cols=129 Identities=18% Similarity=0.351 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhH-HHHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQV-DKAHARADELEKQIDNL 128 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~-~~a~~~~~eLe~eVe~L 128 (441)
|+.+...+..++..++.++..-..+...--..|.+++..|..|.+.+.........+.-... ...++.+..|.++++.|
T Consensus 20 lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L 99 (617)
T PF15070_consen 20 LKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESL 99 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666656666666677888888888888888766543322211111 24555666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 129 KKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (441)
Q Consensus 129 kkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelE 178 (441)
...+..+..+.+.|.....+.+.++.+++..++.++....++...+..++
T Consensus 100 ~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lq 149 (617)
T PF15070_consen 100 EEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQ 149 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777777777766655556677777777777776665555555444443
No 70
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.62 E-value=1.6 Score=49.95 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=10.4
Q ss_pred HhhHHHHhhhhcchhHHHHHHHHHHH
Q 013531 58 ESHIDEKTQELKGKDEVVAQKEKAIQ 83 (441)
Q Consensus 58 es~i~~~~~~i~~k~~~l~~ke~~i~ 83 (441)
.++++.+..+|..|+.+|..+-.-+.
T Consensus 286 K~k~d~~~~eL~rk~~E~~~~qt~l~ 311 (775)
T PF10174_consen 286 KSKMDRLKLELSRKKSELEALQTRLE 311 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333333
No 71
>PRK01156 chromosome segregation protein; Provisional
Probab=95.59 E-value=0.91 Score=52.16 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 013531 368 QVQASVQEMLK 378 (441)
Q Consensus 368 q~Q~~v~~~l~ 378 (441)
.++....+++.
T Consensus 761 ~~~~~~~e~~~ 771 (895)
T PRK01156 761 AMTSLTRKYLF 771 (895)
T ss_pred HHHHHHHHHHH
Confidence 34444445543
No 72
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.27 Score=54.22 Aligned_cols=76 Identities=26% Similarity=0.438 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 013531 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEA----------EKKISDLSAKLEKLQKINDEQKSKIRKTERALK--E 183 (441)
Q Consensus 116 ~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eL----------EkkleELekklEeLek~~aEQk~qIeelEk~lk--e 183 (441)
..+..|+.++..|+..++.++..++.|+++..++ ..++..++..++.|+....+.+..++++++.+. .
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444432 234666778888888888888888888888887 5
Q ss_pred HHHHHHHh
Q 013531 184 EMMRAKFE 191 (441)
Q Consensus 184 ei~k~k~E 191 (441)
.|.++...
T Consensus 509 k~~~lE~s 516 (652)
T COG2433 509 KMRKLELS 516 (652)
T ss_pred HHHhhhhc
Confidence 66665443
No 73
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.53 E-value=3.3 Score=42.26 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIE 148 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~e 148 (441)
.-++.+.+|-++++.+++..+++..++..|-.+..+
T Consensus 155 e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe 190 (294)
T COG1340 155 EENEKLKELKAEIDELKKKAREIHEKIQELANEAQE 190 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666555555555444
No 74
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=95.52 E-value=0.13 Score=42.07 Aligned_cols=65 Identities=43% Similarity=0.544 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 78 KEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALE 143 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLE 143 (441)
.++.|.+|+..|+.|..|-..|.+. .......+.+..+.+.++++++..|.+.++....++..++
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~-el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKK-ELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666676666666422 1222222233333444444444444444444444444333
No 75
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.50 E-value=2.4 Score=41.64 Aligned_cols=88 Identities=17% Similarity=0.314 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 80 KAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159 (441)
Q Consensus 80 ~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekk 159 (441)
+.-.++...|..+..++++|+ .....++++++++++++.+++.+++.++.-..++.-.+.+.-..
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~---------------~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~ 113 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLE---------------VYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDE 113 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555554 23444455566666666666666666665555544443333333
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHHH
Q 013531 160 LEKLQK-----INDEQKSKIRKTERALK 182 (441)
Q Consensus 160 lEeLek-----~~aEQk~qIeelEk~lk 182 (441)
++..-. ..++...+++.+...+.
T Consensus 114 L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~ 141 (251)
T PF11932_consen 114 LEQFVELDLPFLLEERQERLARLRAMLD 141 (251)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHhhh
Confidence 333222 34455556655555544
No 76
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.48 E-value=1.3 Score=50.75 Aligned_cols=66 Identities=26% Similarity=0.370 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
.+++.+.++..++.+...+..++.++-......+.++..|..+++.|+....+...++......+.
T Consensus 358 ~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 358 QLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333333333334444444444444444444444444444444433
No 77
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.48 E-value=0.72 Score=52.98 Aligned_cols=107 Identities=17% Similarity=0.307 Sum_probs=52.2
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHH-HHHHHHHH
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVV-AQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVD-KAHARADE 120 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l-~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~-~a~~~~~e 120 (441)
+-.|+..|+.+++.|+-.++.+..|+.++--.- ..---...+++....-|-+.+-.|. ..++.+++.. ++...+..
T Consensus 330 LQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLR--DlsA~ek~d~qK~~kelE~ 407 (1243)
T KOG0971|consen 330 LQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLR--DLSASEKQDHQKLQKELEK 407 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHH
Confidence 444444555555555555555544444331110 0001123334444444555555553 2333344443 66666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEK 151 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEk 151 (441)
.+.++.+|+.+.+.+..+++.+|+...++..
T Consensus 408 k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkE 438 (1243)
T KOG0971|consen 408 KNSELEELRRQKERLSRELDQAESTIADLKE 438 (1243)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666555443
No 78
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.45 E-value=0.62 Score=46.65 Aligned_cols=43 Identities=28% Similarity=0.413 Sum_probs=26.2
Q ss_pred HhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 58 es~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
.++|.++......-...+......+.+....|.+|+.+|.+|+
T Consensus 194 ~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~ 236 (312)
T PF00038_consen 194 QSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLR 236 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccc
Confidence 4455555555555555555566666666666666666666665
No 79
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.43 E-value=1.7 Score=41.84 Aligned_cols=69 Identities=28% Similarity=0.349 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 114 a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
|-..+..+++++++|+.....++.....|-+....+|+....|..+++.|+..+.......+.+.++.+
T Consensus 58 al~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~ 126 (193)
T PF14662_consen 58 ALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSK 126 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHH
Confidence 333455556666666666666666666666666666666666666666666655555555555554443
No 80
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=95.40 E-value=1.7 Score=39.26 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHhh
Q 013531 87 ERIVSLQKELSSLQ 100 (441)
Q Consensus 87 ~~I~~l~~ei~sLq 100 (441)
..+.++...+..++
T Consensus 5 ~~~~~l~~~~~~l~ 18 (202)
T PF01442_consen 5 DRLDSLSSRTEELE 18 (202)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 81
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=95.37 E-value=0.032 Score=57.35 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
..|.+++.++..||+.+..+...+..-...|..+...|......|.++..+|.+|.
T Consensus 28 GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLs 83 (326)
T PF04582_consen 28 GDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLS 83 (326)
T ss_dssp --------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666555555566666666666666666666654
No 82
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.36 E-value=2.3 Score=39.62 Aligned_cols=27 Identities=33% Similarity=0.527 Sum_probs=16.3
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
.++..||+++..+|..+|++++.+|..
T Consensus 41 ~iDFeqLkien~~l~~kIeERn~eL~~ 67 (177)
T PF13870_consen 41 LIDFEQLKIENQQLNEKIEERNKELLK 67 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777776666665444443
No 83
>PRK01156 chromosome segregation protein; Provisional
Probab=95.34 E-value=2 Score=49.46 Aligned_cols=9 Identities=44% Similarity=0.471 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 013531 50 LKSKIRSLE 58 (441)
Q Consensus 50 l~~~i~~Le 58 (441)
++..+..++
T Consensus 171 ~~~~~~~~~ 179 (895)
T PRK01156 171 LKDVIDMLR 179 (895)
T ss_pred HHHHHHHHH
Confidence 333333333
No 84
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.31 E-value=1.9 Score=48.03 Aligned_cols=57 Identities=11% Similarity=0.253 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 013531 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (441)
Q Consensus 47 l~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~ 103 (441)
...-..++..|+.+|+++..+|.+-+.+++.+...+.+....+.....+...|+...
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578889999999999999999888888888888888888888888888887443
No 85
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.28 E-value=2.3 Score=38.96 Aligned_cols=104 Identities=26% Similarity=0.321 Sum_probs=49.4
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHH
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~e 124 (441)
.+|...+.+-+.|+.+|..++.+|..-..........-......|.+|+.+|..+. ...+.|+.+
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt---------------~el~~L~~E 74 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT---------------SELNQLELE 74 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 45555666777777777777666655333333333333333334444444444443 233444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeL 163 (441)
++.+..+.+.+.........+..+++....++...++..
T Consensus 75 L~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 75 LDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444444444444444444444444444443333333333
No 86
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.26 E-value=3 Score=40.12 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=5.4
Q ss_pred hhhhhHHHhhh
Q 013531 194 SRSKELTEVHS 204 (441)
Q Consensus 194 ~kAk~l~e~h~ 204 (441)
.+--+|.+|..
T Consensus 161 ~keaqL~evl~ 171 (201)
T PF13851_consen 161 KKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHH
Confidence 34445555444
No 87
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.20 E-value=2.3 Score=41.56 Aligned_cols=125 Identities=18% Similarity=0.275 Sum_probs=65.2
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhhHHhhHHHHHHHHHHH
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAHARADEL 121 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~-~~~~~~~~~~a~~~~~eL 121 (441)
+...|....+.+..++..+...++.+.+-..-....-..|.+....+.+....+..+...+ +...+.+....+++..-|
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l 162 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAAL 162 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555555666666666665554444 344444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (441)
Q Consensus 122 e~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~ 167 (441)
+.+++.|+.++.......+-+..++..+..++..++..+..|+..+
T Consensus 163 ~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~l 208 (240)
T PF12795_consen 163 EAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLL 208 (240)
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444444444444444444444444333
No 88
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.20 E-value=1.8 Score=53.26 Aligned_cols=100 Identities=14% Similarity=0.193 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHH---HH-----HHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVD---KA-----HARADEL 121 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~---~a-----~~~~~eL 121 (441)
||.....+..+|.++...|.....++..++..+.++...|+....++..|+.....- ....+ .. -.....|
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~w-K~R~q~L~~k~k~~d~~~~~kL 1312 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRW-KQRNQDLLEKYKDSDKNDYEKL 1312 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCHHHHHHH
Confidence 666666677777777777777777777788888888888888888888887443211 11111 11 1124444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 122 EKQIDNLKKESEKQQKEKEALEARAIEAE 150 (441)
Q Consensus 122 e~eVe~Lkkeie~~ek~~eeLEark~eLE 150 (441)
.++|..|++++...+..++++..+.+.+.
T Consensus 1313 ~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1313 KSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555544444
No 89
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.17 E-value=1.2 Score=47.34 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=16.2
Q ss_pred hhHhHHHHHHHHHHHHhhHHHH
Q 013531 43 LKIELDQLKSKIRSLESHIDEK 64 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~ 64 (441)
+..++..++.++..|+..++.+
T Consensus 102 ~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 102 LEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888887766543
No 90
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.13 E-value=0.91 Score=44.74 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (441)
Q Consensus 123 ~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~ 180 (441)
.+=..+-+++..++.|+..+|.-...++...+.....+..+.....-++..++++...
T Consensus 46 ~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 46 QERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666666666666655555555555555555555555555555443
No 91
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.12 E-value=3.2 Score=42.65 Aligned_cols=111 Identities=23% Similarity=0.324 Sum_probs=59.3
Q ss_pred CchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHH
Q 013531 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (441)
Q Consensus 41 ~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~e 120 (441)
......++.|+.|+..||..-..+.++...-+.+..+.| +++. .|..++ -+|...|+.++..
T Consensus 156 ~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E----ekEq---qLv~dc-----------v~QL~~An~qia~ 217 (306)
T PF04849_consen 156 SQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYE----EKEQ---QLVLDC-----------VKQLSEANQQIAS 217 (306)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc----HHHH---HHHHHH-----------HHHhhhcchhHHH
Confidence 334677888888888887776666555544222222221 1111 111111 2344555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE 169 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aE 169 (441)
|..++..-..+...+..++..|-++..+++.+...+....++|......
T Consensus 218 LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 218 LSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6666666666666666666666666666665555555544444444333
No 92
>PRK11281 hypothetical protein; Provisional
Probab=95.09 E-value=1.9 Score=51.20 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHH---HHHHHHHhcCC
Q 013531 349 KKVVRAYGKFLKSATTYH---HQVQA---SVQEMLKKHEL 382 (441)
Q Consensus 349 e~v~~~~k~~~~~a~~~H---~q~Q~---~v~~~l~~~e~ 382 (441)
+.....+..++..+++.. +|+.. .++++|.+|=|
T Consensus 417 ~~l~~~~~~~l~~~~~l~~~q~Ql~~~~~~l~~~L~~~lf 456 (1113)
T PRK11281 417 DQLNKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQQIF 456 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555666666666663 55543 45556666544
No 93
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.06 E-value=4.2 Score=46.57 Aligned_cols=83 Identities=20% Similarity=0.283 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchhh---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 82 IQDKSERIVSLQKELSSLQKKETLN---AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSA 158 (441)
Q Consensus 82 i~ek~~~I~~l~~ei~sLq~~~~~~---~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELek 158 (441)
+.+++-.+..++.+++.|+.....+ .++.-.+.+..+-+|..|+-.|+-.+-.+..+.+.+..+++++|++.+.+..
T Consensus 286 lSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~ 365 (1265)
T KOG0976|consen 286 LSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALM 365 (1265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 3444555666666666665433221 2222235566667777777777777666666666666666666666555554
Q ss_pred HHHHHH
Q 013531 159 KLEKLQ 164 (441)
Q Consensus 159 klEeLe 164 (441)
.+..++
T Consensus 366 dvr~i~ 371 (1265)
T KOG0976|consen 366 DVRSIQ 371 (1265)
T ss_pred hHHHHH
Confidence 444333
No 94
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.02 E-value=1.4 Score=42.66 Aligned_cols=46 Identities=28% Similarity=0.419 Sum_probs=26.9
Q ss_pred CchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHH
Q 013531 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (441)
Q Consensus 41 ~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~ 86 (441)
.+++..+..++.++...++.+..+...+.+|+.++...++.+..+.
T Consensus 34 v~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~ 79 (202)
T PF06818_consen 34 VSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKK 79 (202)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHh
Confidence 3455555555666666666666666666666666666665555544
No 95
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.00 E-value=1.5 Score=48.85 Aligned_cols=12 Identities=33% Similarity=0.590 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 013531 123 KQIDNLKKESEK 134 (441)
Q Consensus 123 ~eVe~Lkkeie~ 134 (441)
.++..++++++.
T Consensus 449 ~~~~~~~~~i~~ 460 (650)
T TIGR03185 449 RQLETLKEAIEA 460 (650)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 96
>PRK12704 phosphodiesterase; Provisional
Probab=95.00 E-value=1 Score=49.24 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 013531 174 IRKTERALK 182 (441)
Q Consensus 174 IeelEk~lk 182 (441)
+++++....
T Consensus 160 ~~~~~~~~~ 168 (520)
T PRK12704 160 LEKVEEEAR 168 (520)
T ss_pred HHHHHHHHH
Confidence 444444443
No 97
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.99 E-value=2.5 Score=43.37 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 152 KISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 152 kleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
.+.+++.+++.++...++...++.++...+.
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 98
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.92 E-value=1.7 Score=51.68 Aligned_cols=121 Identities=14% Similarity=0.156 Sum_probs=73.0
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHH
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~ 123 (441)
..+...|.++...|+.+++.+++++.+-+.-+.-...........|..++..++.||+..+.--.+++..+-+++..+.+
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~ 251 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAE 251 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45567788899999999999998888766555555556666788888888889888877666555555555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 124 eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
+...+-..+.++-....+|-.+....-.+.+.+..+....+
T Consensus 252 ~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~ 292 (1109)
T PRK10929 252 QSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAA 292 (1109)
T ss_pred hhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333222333333334444444443333344333333333
No 99
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.90 E-value=1.8 Score=48.05 Aligned_cols=72 Identities=26% Similarity=0.457 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 013531 111 VDKAHARADELEKQIDNLKKESEKQQKEKE--------ALEARAIEAEKKISDLSAKLEKLQ----KINDEQKSKIRKTE 178 (441)
Q Consensus 111 ~~~a~~~~~eLe~eVe~Lkkeie~~ek~~e--------eLEark~eLEkkleELekklEeLe----k~~aEQk~qIeelE 178 (441)
...|+.++..|+.+++.|+.+....+.... .+....+..+..+..|...++.++ +..+.-..+|..++
T Consensus 244 Le~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le 323 (629)
T KOG0963|consen 244 LEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALE 323 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888877776664433 233333334444444443333332 33444445555555
Q ss_pred HHHH
Q 013531 179 RALK 182 (441)
Q Consensus 179 k~lk 182 (441)
+.+.
T Consensus 324 ~~l~ 327 (629)
T KOG0963|consen 324 KELK 327 (629)
T ss_pred HHHH
Confidence 5554
No 100
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.90 E-value=5.4 Score=48.96 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=49.5
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 67 ELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA 146 (441)
Q Consensus 67 ~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark 146 (441)
+..+-...|...+..+.+.+..+.++...+..|+.....+.+-+.... ++..+..++..+...++.+..+.++.+...
T Consensus 294 rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e--e~lr~q~ei~~l~~~LeELee~Lee~eeeL 371 (1486)
T PRK04863 294 ELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ--TALRQQEKIERYQADLEELEERLEEQNEVV 371 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555666666666666666666533322222211111 111223333444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 147 IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (441)
Q Consensus 147 ~eLEkkleELekklEeLek~~aEQk~qIeelEk~l 181 (441)
.+++.++.+++.+++.++......+.++.++...+
T Consensus 372 eeleeeleeleeEleelEeeLeeLqeqLaelqqel 406 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDELKSQLADYQQAL 406 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433333
No 101
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.87 E-value=3.3 Score=40.61 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhhHH
Q 013531 48 DQLKSKIRSLESHID 62 (441)
Q Consensus 48 ~~l~~~i~~Les~i~ 62 (441)
..++.+|.++....+
T Consensus 23 ~~~~~~l~~~~~~~~ 37 (302)
T PF10186_consen 23 LELRSELQQLKEENE 37 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 102
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=94.83 E-value=2 Score=41.93 Aligned_cols=136 Identities=12% Similarity=0.181 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhh-HHHHHHHHHHHHHHH
Q 013531 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQ-VDKAHARADELEKQI 125 (441)
Q Consensus 47 l~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~-~~~a~~~~~eLe~eV 125 (441)
+++|..+|....+.+.+....+..-...+..........-..|.+....+..+.+.-......+ ..-+.++...|+.+.
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~ 159 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAEL 159 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHH
Confidence 4455555555555555555555555555555554454444555554444444433222211122 444566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 126 e~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
..|+.+++-++........+..=...+.+.+..+++.++......+..|+.......
T Consensus 160 ~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~ea 216 (240)
T PF12795_consen 160 AALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEA 216 (240)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655555555566666666666666666666666666555444
No 103
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.71 E-value=2.7 Score=45.96 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHHHHhcccccchHHHHHhhhhh
Q 013531 232 PAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIP 265 (441)
Q Consensus 232 p~~~~~~~ka~~~~~~~~~w~~P~l~~~~~K~~p 265 (441)
|+-.+..+.+.++.-..|.==|--++....|...
T Consensus 254 p~rreia~~~l~~li~dgrihp~riee~~~~~~~ 287 (514)
T TIGR03319 254 PVRREIARMALEKLIQDGRIHPARIEEMVEKATK 287 (514)
T ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3344444444444444444333333333333333
No 104
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.69 E-value=1.5 Score=47.58 Aligned_cols=129 Identities=24% Similarity=0.286 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhc----------chhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHH
Q 013531 46 ELDQLKSKIRSLESHIDEKTQELK----------GKDEVVA-QKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKA 114 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i~----------~k~~~l~-~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a 114 (441)
.+++|+-++-.|++++..+.++.. ++...+= -+.+.+.+.+.++.+++.+|+++-+..+. -
T Consensus 160 ~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~--------q 231 (596)
T KOG4360|consen 160 LLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSR--------Q 231 (596)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 346666666666666555544322 1222222 34555666667777777777766533322 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
++..+.|.+++.++++.+.-+.-+++.+..-.........+++.+.+++++..++-..++.+.+..++
T Consensus 232 ~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 232 QEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788888888888877787788777777777777778888888888888888877777777666
No 105
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.67 E-value=4.3 Score=44.38 Aligned_cols=10 Identities=20% Similarity=0.189 Sum_probs=4.0
Q ss_pred cchhHHHHhh
Q 013531 311 VDPYFQEAKK 320 (441)
Q Consensus 311 v~Py~~e~ke 320 (441)
|+-.+.+|-.
T Consensus 458 Vtls~eEy~~ 467 (522)
T PF05701_consen 458 VTLSLEEYES 467 (522)
T ss_pred eeecHHHHHH
Confidence 3334444433
No 106
>PRK12704 phosphodiesterase; Provisional
Probab=94.66 E-value=2.8 Score=45.92 Aligned_cols=6 Identities=67% Similarity=0.501 Sum_probs=2.2
Q ss_pred HHHHHH
Q 013531 240 KALEKK 245 (441)
Q Consensus 240 ka~~~~ 245 (441)
.++++.
T Consensus 268 ~~l~~l 273 (520)
T PRK12704 268 LALEKL 273 (520)
T ss_pred HHHHHH
Confidence 333333
No 107
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.64 E-value=0.93 Score=46.46 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=11.4
Q ss_pred HHHhcCCCchhccchHHHHHHHH
Q 013531 376 MLKKHELTSPLATKELEWFAASA 398 (441)
Q Consensus 376 ~l~~~e~~~~~at~el~wflasa 398 (441)
......+-=++.+.+ -|=.|.-
T Consensus 274 ~I~~~si~~~~~~~~-~WT~AlK 295 (314)
T PF04111_consen 274 KIGGVSIKLQFNSEE-EWTKALK 295 (314)
T ss_dssp EECTCES-STTS-HH-HHHHHHH
T ss_pred ccCCeeeeecCCChh-HHHHHHH
Confidence 333334434556666 8888773
No 108
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.63 E-value=2.3 Score=43.61 Aligned_cols=131 Identities=22% Similarity=0.293 Sum_probs=60.2
Q ss_pred CchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHH
Q 013531 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEV----VAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHA 116 (441)
Q Consensus 41 ~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~----l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~ 116 (441)
.++..-+..|..+-.+|++..+.+..+-..-.+. +..+-+.+.+.+..|..|+.+|+.-. +....+.++
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~-Ee~~rQQEE------ 235 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKT-EENRRQQEE------ 235 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH-HHHHHHHHH------
Confidence 3444444444444444444444433222222111 23344556666777888888776553 434444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk 179 (441)
+..|-.+|-.|++-....-.+.+++.............|..++.++++.-.+-...+.+.+.
T Consensus 236 -It~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQE 297 (306)
T PF04849_consen 236 -ITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQE 297 (306)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444443333444445555555544444444444443
No 109
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.62 E-value=6.1 Score=40.43 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 80 KAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159 (441)
Q Consensus 80 ~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekk 159 (441)
..+.+...+=.++..++.++- +.-...++++.++.+++.+|+...+.++.++..+-..++++-..+.++-..
T Consensus 20 ~~~~e~~ekR~El~~~~~~~~--------ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~ 91 (294)
T COG1340 20 EEIEELKEKRDELRKEASELA--------EKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKE 91 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333345555555553 334566778888888888888888888888888888888877777777666
Q ss_pred HHHHHHHHH
Q 013531 160 LEKLQKIND 168 (441)
Q Consensus 160 lEeLek~~a 168 (441)
+.++-...+
T Consensus 92 ~~~l~e~~~ 100 (294)
T COG1340 92 YRELKEKRN 100 (294)
T ss_pred HHHHHHHhh
Confidence 666655544
No 110
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.57 E-value=3.3 Score=45.62 Aligned_cols=40 Identities=10% Similarity=0.250 Sum_probs=31.5
Q ss_pred hHhHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 337 VDNVRVALKPYTKKVVRAYGKFLKSATTYHHQVQASVQEM 376 (441)
Q Consensus 337 vdkv~~~~~Py~e~v~~~~k~~~~~a~~~H~q~Q~~v~~~ 376 (441)
+|++...+.=|..++...+..++..+.++|--+|+.|.+.
T Consensus 526 l~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~ 565 (581)
T KOG0995|consen 526 LDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENL 565 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777787888888999999999999888764
No 111
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.55 E-value=5.7 Score=45.83 Aligned_cols=15 Identities=40% Similarity=0.414 Sum_probs=6.4
Q ss_pred hhHhHHHHHHHHHHH
Q 013531 43 LKIELDQLKSKIRSL 57 (441)
Q Consensus 43 ~~~el~~l~~~i~~L 57 (441)
++.|+++|++.-.++
T Consensus 391 Lr~elaql~a~r~q~ 405 (980)
T KOG0980|consen 391 LRNELAQLLASRTQL 405 (980)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444433333
No 112
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.52 E-value=4.1 Score=44.89 Aligned_cols=30 Identities=10% Similarity=0.338 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 151 KKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (441)
Q Consensus 151 kkleELekklEeLek~~aEQk~qIeelEk~ 180 (441)
...+++...++.+++...+....++.+++.
T Consensus 383 e~leel~e~leeie~eq~ei~e~l~~Lrk~ 412 (569)
T PRK04778 383 EELEEILKQLEEIEKEQEKLSEMLQGLRKD 412 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 113
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.48 E-value=3.1 Score=44.45 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 013531 389 KELEWFAASALLVLPVIILFRIG 411 (441)
Q Consensus 389 ~el~wflasall~~P~~~~~~~~ 411 (441)
..+++|++|+-+++-++.+.|+.
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~ 496 (498)
T TIGR03007 474 RRLAAFLASAGLLIAVYGALMAM 496 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778888888888777653
No 114
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.46 E-value=5 Score=38.71 Aligned_cols=79 Identities=28% Similarity=0.285 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 88 RIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (441)
Q Consensus 88 ~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~ 167 (441)
.-..+..|+..| +......+++.....++...++++...|-.++..++.+...+......+.++..+|......|+..+
T Consensus 61 ~aK~l~eEledL-k~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 61 KAKALEEELEDL-KTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 333444455555 2333334556666666666666666666666666666666666666666666555555554554444
No 115
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.43 E-value=0.61 Score=45.18 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhHHHHhhhhcc
Q 013531 50 LKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~ 70 (441)
++..+..|+.++.+++.++.+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666555554
No 116
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.37 E-value=3.6 Score=36.77 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013531 158 AKLEKLQKINDEQKSKIRKTER 179 (441)
Q Consensus 158 kklEeLek~~aEQk~qIeelEk 179 (441)
.....|++.+.+.+.+++++..
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445554443
No 117
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=94.37 E-value=3.4 Score=39.60 Aligned_cols=108 Identities=19% Similarity=0.288 Sum_probs=67.6
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 67 ELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA 146 (441)
Q Consensus 67 ~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark 146 (441)
-|.||...+.+++..+.|-+..|.+-...|.+-| ..+..|..-+.....++..|+.-+..........+.-.
T Consensus 61 aL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq--------~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a 132 (188)
T PF05335_consen 61 ALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQ--------ANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVA 132 (188)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777655555554443 23334445556666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 147 IEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 147 ~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
......+.+-...++...+..+.+..++.....+++
T Consensus 133 ~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~ 168 (188)
T PF05335_consen 133 EGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYE 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666655
No 118
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.35 E-value=2.3 Score=49.07 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhHHHHhhhh
Q 013531 50 LKSKIRSLESHIDEKTQEL 68 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i 68 (441)
|..+++++|+.|.++..++
T Consensus 422 Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 422 LSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 119
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.22 E-value=6.5 Score=42.02 Aligned_cols=19 Identities=11% Similarity=0.323 Sum_probs=9.1
Q ss_pred HhHHHHHHHHHHHHhhHHH
Q 013531 45 IELDQLKSKIRSLESHIDE 63 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~ 63 (441)
.+++.++.++.+.+..+.+
T Consensus 168 ~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 168 EQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444
No 120
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=94.21 E-value=3.6 Score=41.99 Aligned_cols=20 Identities=0% Similarity=0.104 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhHHHHhhhhc
Q 013531 50 LKSKIRSLESHIDEKTQELK 69 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~ 69 (441)
++..+.++++.+...+.++.
T Consensus 84 ~~~~l~~a~a~l~~a~a~l~ 103 (346)
T PRK10476 84 YELTVAQAQADLALADAQIM 103 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555544444433
No 121
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.10 E-value=1.9 Score=45.94 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=5.6
Q ss_pred hhccCCchHH
Q 013531 226 WNAHGKPAMD 235 (441)
Q Consensus 226 w~~hg~p~~~ 235 (441)
|-..|.|++.
T Consensus 338 ~V~~G~~l~~ 347 (457)
T TIGR01000 338 YVPKGTLIAQ 347 (457)
T ss_pred EeCCCCEEEE
Confidence 3445666664
No 122
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=94.08 E-value=3.2 Score=36.49 Aligned_cols=45 Identities=29% Similarity=0.434 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSA 158 (441)
Q Consensus 114 a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELek 158 (441)
.+-++.+|+.+|+++...+++-.--+..++.+....++-.+.++-
T Consensus 56 ~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel 100 (107)
T PF09304_consen 56 RNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILEL 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 344566666666666666665333333445444444444444433
No 123
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.08 E-value=5.1 Score=45.62 Aligned_cols=138 Identities=20% Similarity=0.326 Sum_probs=97.3
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---chhh------HH-------
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK---ETLN------AA------- 108 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~---~~~~------~~------- 108 (441)
.|+.-|+..+.|.+..-..+...+.+-...+..-...+.+...+|..|-..+..|.+- .... ..
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~ 344 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDG 344 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhccccccccccc
Confidence 3455688888888888888888888877777777777777777888888888877651 1110 00
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 109 -------EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIE----AEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (441)
Q Consensus 109 -------~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~e----LEkkleELekklEeLek~~aEQk~qIeel 177 (441)
.+..--+.+......++..|+.++..+..+...++....+ ++..+.++..++..+++...+-+.++..+
T Consensus 345 ~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~L 424 (717)
T PF09730_consen 345 DYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISEL 424 (717)
T ss_pred chhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 0011224556666677777888887777777776665544 45567888888888888777778888888
Q ss_pred HHHHH
Q 013531 178 ERALK 182 (441)
Q Consensus 178 Ek~lk 182 (441)
++.+.
T Consensus 425 E~ELr 429 (717)
T PF09730_consen 425 EKELR 429 (717)
T ss_pred HHHHH
Confidence 88887
No 124
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.06 E-value=2.3 Score=46.48 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=12.1
Q ss_pred HHHHHHHHHHH----HHHHHHHHhhhhhhhhH
Q 013531 172 SKIRKTERALK----EEMMRAKFEATSRSKEL 199 (441)
Q Consensus 172 ~qIeelEk~lk----eei~k~k~E~~~kAk~l 199 (441)
..+++++.... ..+.+...+++..|.+.
T Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 183 (514)
T TIGR03319 152 ILLEEVEEEARHEAAKLIKEIEEEAKEEADKK 183 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 33444444444444444
No 125
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.05 E-value=6.3 Score=38.37 Aligned_cols=48 Identities=10% Similarity=0.201 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKE 95 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~e 95 (441)
..++.++...+.++.++.+.+........+..++|.+.++.|..+-.+
T Consensus 12 ~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e 59 (207)
T PF05010_consen 12 KKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE 59 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555666666666665555444
No 126
>PRK00106 hypothetical protein; Provisional
Probab=94.02 E-value=4.8 Score=44.40 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 013531 173 KIRKTERALK 182 (441)
Q Consensus 173 qIeelEk~lk 182 (441)
.+++++....
T Consensus 174 l~~~~~~~~~ 183 (535)
T PRK00106 174 ILAETENKLT 183 (535)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 127
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.94 E-value=1.3 Score=45.40 Aligned_cols=63 Identities=27% Similarity=0.364 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~l 181 (441)
.+|+.+-+.|.+++.+++.+...++......=...+.+...+.+.++..+..+.+++.....+
T Consensus 67 ~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 67 EELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433333333333333444444444444444444444444433
No 128
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.86 E-value=7.3 Score=46.44 Aligned_cols=57 Identities=26% Similarity=0.306 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhHHHHh--------hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhh
Q 013531 50 LKSKIRSLESHIDEKT--------QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN 106 (441)
Q Consensus 50 l~~~i~~Les~i~~~~--------~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~ 106 (441)
|...|..|.+..+++. +++++.++.+.+.++.++..+..+.+++.++.-+|.++..+
T Consensus 470 L~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 470 LEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444 45666666666667777777777777777777776655433
No 129
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.84 E-value=3.1 Score=46.97 Aligned_cols=83 Identities=23% Similarity=0.279 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 80 KAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN-LKKESEKQQKEKEALEARAIEAEKKISDLSA 158 (441)
Q Consensus 80 ~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~-Lkkeie~~ek~~eeLEark~eLEkkleELek 158 (441)
..|+++.....+++.++..|.... ...--++..+.+++.+|+.++.. +.+.+..+..+.+.+..+.+.++.++++++.
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y-~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~ 366 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTM-LANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKA 366 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555554443321 12223344555555555555433 2333444444444444444455555555544
Q ss_pred HHHHH
Q 013531 159 KLEKL 163 (441)
Q Consensus 159 klEeL 163 (441)
++.++
T Consensus 367 ~~~~~ 371 (754)
T TIGR01005 367 ASAQA 371 (754)
T ss_pred HHHhC
Confidence 44433
No 130
>PRK00106 hypothetical protein; Provisional
Probab=93.82 E-value=2.8 Score=46.14 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHHHHHhcccccchHHHHHhhhhhhHHH
Q 013531 232 PAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKE 269 (441)
Q Consensus 232 p~~~~~~~ka~~~~~~~~~w~~P~l~~~~~K~~pv~~~ 269 (441)
|+-.+..+.++++.-..|.==|--++....|...-+..
T Consensus 275 pvRReiAr~~le~Li~dgrIhp~rIEe~v~k~~~e~~~ 312 (535)
T PRK00106 275 PIRREIARMTLESLIKDGRIHPARIEELVEKNRLEMDN 312 (535)
T ss_pred hHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554444444444444444433
No 131
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=93.56 E-value=6.5 Score=36.82 Aligned_cols=125 Identities=14% Similarity=0.329 Sum_probs=78.4
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHH
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~ 123 (441)
+.|.+.++.+|..++..|.+.-.+.+. ++..-........+.+..+... .++.+..|++.+.++.-
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~evD~-------Le~~er~aR~rL~eVS~~f~~y-------sE~dik~AYe~A~~lQ~ 91 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIEEVDK-------LEKRERQARQRLAEVSRNFDRY-------SEEDIKEAYEEAHELQV 91 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhccc-------CHHHHHHHHHHHHHHHH
Confidence 455566666666666666555444443 4444444445555555555444 35667788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 124 eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
++..++..-..+..+-+.||-+...++.-++..+..+..+.-...-....+.+....++
T Consensus 92 ~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e 150 (159)
T PF05384_consen 92 RLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIE 150 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888777777777777777777777766666666555555555555555555554444
No 132
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.54 E-value=14 Score=40.81 Aligned_cols=131 Identities=25% Similarity=0.402 Sum_probs=67.3
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhhchhhHHhhH
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD-----------KSERIVSLQKELSSLQKKETLNAAEQV 111 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~e-----------k~~~I~~l~~ei~sLq~~~~~~~~~~~ 111 (441)
...+++.|...-..|+.+|.+++ .+.++.+-+.++-..++. ...+-+.+.+.+.-|+ +-.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~e-k~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~--------~Ei 303 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINERE-KDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLK--------SEI 303 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHH--------HHH
Confidence 35566666666666766666543 233333333333222222 2222222222332222 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 112 DKAHARADELEKQIDNLKKESEKQQ---KEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 112 ~~a~~~~~eLe~eVe~Lkkeie~~e---k~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
..-++.+..|..++++|+++++.|. ++.+....+++.+...++.++.+++.+.+..-+++.+++..-+.++
T Consensus 304 e~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le 377 (581)
T KOG0995|consen 304 EEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELE 377 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2334445555666777777766664 4445555566666666777777777776666666555555444444
No 133
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.49 E-value=4.5 Score=41.58 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 84 DKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQ 135 (441)
Q Consensus 84 ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ 135 (441)
.+...+..|+++-..|- +.....++-......+...|+.++..|+...+.+
T Consensus 148 ~L~~~~~~l~~D~~~L~-~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 148 GLDENLEGLKEDYKLLM-KELELLNSIKPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33344444444444442 1112222223344445555555555555444443
No 134
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.49 E-value=8.2 Score=37.83 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=9.9
Q ss_pred hHhHHHHHHHHHHHHhhHHH
Q 013531 44 KIELDQLKSKIRSLESHIDE 63 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~ 63 (441)
+.++..++.....|+.+|++
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544
No 135
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.47 E-value=9.4 Score=38.42 Aligned_cols=73 Identities=21% Similarity=0.355 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIE---AEK-KISDLSAKLEKLQKINDEQKSKIRKTERALKEEMMRA 188 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~e---LEk-kleELekklEeLek~~aEQk~qIeelEk~lkeei~k~ 188 (441)
+.+.+++.|+.|++.|...|.+...+..-|-....- +.. ++.+|. ..++...+.|+..++++...++.++..+
T Consensus 78 k~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~---rqlq~lk~~qqdEldel~e~~~~el~~l 154 (258)
T PF15397_consen 78 KEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLV---RQLQQLKDSQQDELDELNEMRQMELASL 154 (258)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666655555555544432 111 344444 4445566677778888877777444433
No 136
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=93.45 E-value=0.66 Score=42.94 Aligned_cols=57 Identities=26% Similarity=0.437 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVA---------QKEKAIQDKSERIVSLQKELSSLQK 101 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~---------~ke~~i~ek~~~I~~l~~ei~sLq~ 101 (441)
.++..++.+|.+|+.++.++.++++....+|+ ++...|.+++..|..+++.+..|+.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444333333 3455556666666666666666654
No 137
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.36 E-value=1.8 Score=41.95 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHh
Q 013531 86 SERIVSLQKELSSL 99 (441)
Q Consensus 86 ~~~I~~l~~ei~sL 99 (441)
++.++++..+++.+
T Consensus 99 e~el~~l~~~l~~~ 112 (206)
T PRK10884 99 ENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 138
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.27 E-value=8.9 Score=43.38 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=12.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 69 ~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
++||+.|.++-..=+++|+++-.-+.-|--|.
T Consensus 449 aEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLR 480 (961)
T KOG4673|consen 449 AEKDEIINQLMAEGEKLSKKQLAQSAIIKKLR 480 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444443
No 139
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.24 E-value=7.9 Score=46.08 Aligned_cols=96 Identities=27% Similarity=0.306 Sum_probs=60.6
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAI 147 (441)
Q Consensus 68 i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~ 147 (441)
|.+-|.-.-.-++.|++.+..|.--++-|+..|. ..-.+++-+..|..++++|+..+++|+.....+..+....+....
T Consensus 1572 L~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~-~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~ 1650 (1758)
T KOG0994|consen 1572 LEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQE-ETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAG 1650 (1758)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3333444444556677777777777777777763 344566667788888888888888888777777666666555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013531 148 EAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 148 eLEkkleELekklEeLe 164 (441)
.+..+..+.+..++.|+
T Consensus 1651 sa~~~A~~a~q~~~~lq 1667 (1758)
T KOG0994|consen 1651 SAKEQALSAEQGLEILQ 1667 (1758)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 54444444444444333
No 140
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=3.6 Score=46.51 Aligned_cols=102 Identities=22% Similarity=0.206 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhh
Q 013531 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK---EEMMRAKFEA 192 (441)
Q Consensus 116 ~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk---eei~k~k~E~ 192 (441)
.+.+.+.++...+..-++.+.+...++......+..+++..++++++++...++....++....... +++.++....
T Consensus 538 ~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 538 SNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKL 617 (698)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555566666555555556666666666666666555555555555444432 4444443332
Q ss_pred hhhhhhHHHhhhccCChhHHHHHHhhhh
Q 013531 193 TSRSKELTEVHSAWLPPWLAVHLLQCQS 220 (441)
Q Consensus 193 ~~kAk~l~e~h~~wlppw~a~~~~~~q~ 220 (441)
..- +. +.+|+.--+-|++++..|+.
T Consensus 618 e~~-k~--~~~~~s~d~~L~EElk~yK~ 642 (698)
T KOG0978|consen 618 ERL-KK--EESGASADEVLAEELKEYKE 642 (698)
T ss_pred HHh-cc--ccccccccHHHHHHHHHHHh
Confidence 211 11 11255555667777777664
No 141
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.14 E-value=6.1 Score=43.61 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=6.7
Q ss_pred hhHhHHHHHHHH
Q 013531 43 LKIELDQLKSKI 54 (441)
Q Consensus 43 ~~~el~~l~~~i 54 (441)
.+.||.+|+.++
T Consensus 40 EK~El~~LNDRL 51 (546)
T KOG0977|consen 40 EKKELQELNDRL 51 (546)
T ss_pred HHHHHHHHHHHH
Confidence 355666666554
No 142
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.13 E-value=4.1 Score=42.72 Aligned_cols=21 Identities=10% Similarity=0.363 Sum_probs=10.3
Q ss_pred HhHHHHHHHHHHHHhhHHHHh
Q 013531 45 IELDQLKSKIRSLESHIDEKT 65 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~ 65 (441)
.++.+|+.++...+++..+..
T Consensus 215 ~~l~~l~~~l~~~~~~~~~~~ 235 (444)
T TIGR03017 215 ARLNELSAQLVAAQAQVMDAS 235 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444433
No 143
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.09 E-value=12 Score=42.63 Aligned_cols=128 Identities=21% Similarity=0.271 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHH----HHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHAR----ADELEKQI 125 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~----~~eLe~eV 125 (441)
+..+|..|+..+....+++.....+...+-..+.+..+....++.+...|..+. +...--+.| ..+|+++.
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~-----ke~K~rE~rll~dyselEeEN 106 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEI-----KEYKFREARLLQDYSELEEEN 106 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhhHHHHHHH
Confidence 444444444444444444444444444455555555555555555555553221 112223333 67888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 126 DNLKKESEKQQKEKEALEARAIE---AEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 126 e~Lkkeie~~ek~~eeLEark~e---LEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
-+|++++.-+..---+.|+-+-+ ++....-++..++++...+.--+.+++++-..++
T Consensus 107 islQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~ 166 (717)
T PF09730_consen 107 ISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLK 166 (717)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777766666665555 5555666778888888777777777777777777
No 144
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.03 E-value=11 Score=46.80 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=43.0
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhchhh
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKA----IQDKSERIVSLQKELSSLQKKETLN 106 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~----i~ek~~~I~~l~~ei~sLq~~~~~~ 106 (441)
+...+.-|-.+-..|++.+.-++.++.++.+.+...... +.+++..+..+..+...+|..+.++
T Consensus 176 ~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l 243 (1822)
T KOG4674|consen 176 SQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSL 243 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677777777777777777777777666555 6666666666666666666554443
No 145
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.99 E-value=8.5 Score=44.24 Aligned_cols=99 Identities=21% Similarity=0.233 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 84 DKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 84 ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeL 163 (441)
|-+++|.+--..++.=..+.-..-+.++..+..++.++..+...|-+.+..-.+-+.+|...+...+..+..|..+++.+
T Consensus 67 e~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~ 146 (769)
T PF05911_consen 67 EQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLEST 146 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444444433333322222233344444445555555555556666666666667777777777777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013531 164 QKINDEQKSKIRKTERALK 182 (441)
Q Consensus 164 ek~~aEQk~qIeelEk~lk 182 (441)
++.+..++-.+.-+.+.++
T Consensus 147 eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 147 EKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888877777777776
No 146
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=92.95 E-value=5.5 Score=48.46 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchhc
Q 013531 357 KFLKSATTYHHQVQASVQEMLKKHELTSPLA 387 (441)
Q Consensus 357 ~~~~~a~~~H~q~Q~~v~~~l~~~e~~~~~a 387 (441)
+++..+-..=.-.|+.|...|..-.++-.|.
T Consensus 606 ~l~df~e~v~~~~ra~IEaAL~~~GLLDA~v 636 (1353)
T TIGR02680 606 QLVDFADDVPADVRAGLEAALEAAGLLDAWV 636 (1353)
T ss_pred hheecCCCCCHHHHHHHHHHHHHCCCcceee
Confidence 3333333344456677777888777777663
No 147
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.87 E-value=8.1 Score=35.98 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=64.0
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcchhHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhchhh------HH
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEV--------VAQKEKAIQDKSERIVSLQKELSSLQKKETLN------AA 108 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~--------l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~------~~ 108 (441)
.+.+++.+|.+...|...+..++..|..+++- ..++.-.......+|.+...++..|....... -.
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~k 83 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVK 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999988888888887762 23344445566677777777777775433222 22
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (441)
Q Consensus 109 ~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleEL 156 (441)
+...........+..++......+.++..++..+..+...+.....++
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444433333
No 148
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.84 E-value=0.22 Score=51.30 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 52 ~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
.+|..|++.|..++..|.+-.-+|.+....|......|.++++.|++|
T Consensus 56 s~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~l 103 (326)
T PF04582_consen 56 STISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSL 103 (326)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 333333333333333333333333333333333333333333333333
No 149
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.82 E-value=3.2 Score=46.89 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=38.7
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS 91 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~ 91 (441)
...+..|+.++.+|++++.++......+.-.+......|.+....|..
T Consensus 287 ~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~ 334 (754)
T TIGR01005 287 EDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRS 334 (754)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999888888888888888777777776544
No 150
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.82 E-value=9.6 Score=42.07 Aligned_cols=99 Identities=22% Similarity=0.329 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 79 EKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSA 158 (441)
Q Consensus 79 e~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELek 158 (441)
.+.|.........+..+++.++........+ .++...+++++..|.+..+.+...+.+-..--+.+...+.++..
T Consensus 312 ~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e-----~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~ 386 (560)
T PF06160_consen 312 YEYLEHAKEQNKELKEELERVSQSYTLNHNE-----LEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEE 386 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 3445555556666666666666544333222 12334444444444444444444444433333444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 159 KLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 159 klEeLek~~aEQk~qIeelEk~lk 182 (441)
.++.+++...+....++.+.+.-.
T Consensus 387 ~l~~ie~~q~~~~~~l~~L~~dE~ 410 (560)
T PF06160_consen 387 QLEEIEEEQEEINESLQSLRKDEK 410 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444433
No 151
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.79 E-value=19 Score=40.97 Aligned_cols=171 Identities=19% Similarity=0.245 Sum_probs=84.8
Q ss_pred HHHHhhHHHHhhhhcchhHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHH-HHHHHHHHHHHHHH
Q 013531 55 RSLESHIDEKTQELKGKDEVVAQK-------EKAIQDKSERIVSLQKELSSLQKKETLNAAEQVD-KAHARADELEKQID 126 (441)
Q Consensus 55 ~~Les~i~~~~~~i~~k~~~l~~k-------e~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~-~a~~~~~eLe~eVe 126 (441)
.+|-+.=+.|.+++-...-.|+.+ |.....+-++|..|++|..-|. . ..+.++-.. --.+.+..+++++.
T Consensus 456 ~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk-~-il~~Kee~Ek~~~E~I~k~~ae~~ 533 (961)
T KOG4673|consen 456 NQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLK-S-ILRDKEETEKLLQETIEKHQAELT 533 (961)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHH-H-HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433 4445555668888888887772 2 233333333 23345666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH---------
Q 013531 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSA---------------KLEKLQKINDEQKSKIRKTERALK--------- 182 (441)
Q Consensus 127 ~Lkkeie~~ek~~eeLEark~eLEkkleELek---------------klEeLek~~aEQk~qIeelEk~lk--------- 182 (441)
.-++..-....++++++++...++.-.+++.+ +-+.|-..+.++...+...++...
T Consensus 534 rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~E 613 (961)
T KOG4673|consen 534 RQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGE 613 (961)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665554443333222 222222333333333333333332
Q ss_pred -HHHHHHHHhhhhhhhhHHHhhhccCChhHHHHHHhhh---hhhhhhhhc
Q 013531 183 -EEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQ---SLIETHWNA 228 (441)
Q Consensus 183 -eei~k~k~E~~~kAk~l~e~h~~wlppw~a~~~~~~q---~~~~~~w~~ 228 (441)
+++|+.-..+.-++..+...-|+---|-| -....+| +-.++-|+.
T Consensus 614 i~~LqrRlqaaE~R~eel~q~v~~TTrPLl-RQIE~lQ~tl~~~~tawer 662 (961)
T KOG4673|consen 614 IEDLQRRLQAAERRCEELIQQVPETTRPLL-RQIEALQETLSKAATAWER 662 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccHHH-HHHHHHHHHHhhhhhHHHH
Confidence 23444444444566777776676666643 2333333 334566753
No 152
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.77 E-value=3.4 Score=40.61 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeL 163 (441)
+.++-..|..+++.++.+++.++.....++..++.++.++++|
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444433333333333333333333
No 153
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.75 E-value=8.4 Score=45.08 Aligned_cols=56 Identities=14% Similarity=0.333 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (441)
Q Consensus 122 e~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeel 177 (441)
.+++.+|...|.+.....+.+..+..+++..+.+...++..++....+.+.++.++
T Consensus 396 r~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~ 451 (1200)
T KOG0964|consen 396 RSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEF 451 (1200)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH
Confidence 33444444444444444444444444444444444444444444444444433333
No 154
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.74 E-value=1.3 Score=49.12 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=6.4
Q ss_pred HHHHhhhhhhHH
Q 013531 257 ETIKAKWIPAVK 268 (441)
Q Consensus 257 ~~~~~K~~pv~~ 268 (441)
+++...=+|++.
T Consensus 584 e~f~~~~iPv~~ 595 (652)
T COG2433 584 EEFFKNEIPVLP 595 (652)
T ss_pred HHHhhcCCceee
Confidence 444555566654
No 155
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.74 E-value=4.5 Score=46.31 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 75 VAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (441)
Q Consensus 75 l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~e 140 (441)
++.++..|.++..+..+++.+.+.||.... ..+++...++-++.++++++.+|..++..-..+|.
T Consensus 101 lk~~~sQiriLQn~c~~lE~ekq~lQ~ti~-~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf 165 (1265)
T KOG0976|consen 101 LKHHESQIRILQNKCLRLEMEKQKLQDTIQ-GAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIF 165 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Confidence 333455555555555555555555553332 22344455555666666666666555544444443
No 156
>PRK11281 hypothetical protein; Provisional
Probab=92.59 E-value=3.6 Score=49.05 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=9.7
Q ss_pred hhHhHHHHHHHHHHHHh
Q 013531 43 LKIELDQLKSKIRSLES 59 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les 59 (441)
...++.+.+.++..|..
T Consensus 92 Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 92 APAKLRQAQAELEALKD 108 (1113)
T ss_pred hHHHHHHHHHHHHHhhc
Confidence 45556666666665544
No 157
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.56 E-value=7.6 Score=45.44 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekk 159 (441)
+.++.+.+.+-++++..+.-+.+++..+.+.+..++..++.+
T Consensus 330 l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~ 371 (1200)
T KOG0964|consen 330 LQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQK 371 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333344444444444444444433333333333333333
No 158
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.53 E-value=11 Score=38.91 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=20.5
Q ss_pred CchhHhHHHHHHHHHHHHhhHHHHhh
Q 013531 41 SPLKIELDQLKSKIRSLESHIDEKTQ 66 (441)
Q Consensus 41 ~~~~~el~~l~~~i~~Les~i~~~~~ 66 (441)
..++.+++..+.+...|...|..+.+
T Consensus 37 ~~Lk~El~~ek~~~~~L~~e~~~lr~ 62 (310)
T PF09755_consen 37 RVLKRELETEKARCKHLQEENRALRE 62 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999998888877643
No 159
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=92.50 E-value=10 Score=41.79 Aligned_cols=62 Identities=13% Similarity=0.273 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~ 180 (441)
...++++++|+..++.+-..++.-+..-+.+...++++...+.+.++........+.+++++
T Consensus 350 r~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrkd 411 (570)
T COG4477 350 RKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKD 411 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444455555555555555555444455555555556666666665555555555555543
No 160
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=92.47 E-value=11 Score=36.62 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lk 129 (441)
=-.+|-+|+..+.+....+..++..+..+......++-.+...++++....++.... ..+++.|+.++..|+
T Consensus 29 K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lL--------rekl~~le~El~~Lr 100 (202)
T PF06818_consen 29 KDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELL--------REKLGQLEAELAELR 100 (202)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHh--------hhhhhhhHHHHHHHH
Confidence 344556666666666666666666666666666666666666666666665443222 234777777777777
Q ss_pred HHHHHH
Q 013531 130 KESEKQ 135 (441)
Q Consensus 130 keie~~ 135 (441)
......
T Consensus 101 ~~l~~~ 106 (202)
T PF06818_consen 101 EELACA 106 (202)
T ss_pred HHHHhh
Confidence 766665
No 161
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.35 E-value=18 Score=38.62 Aligned_cols=103 Identities=10% Similarity=0.138 Sum_probs=55.0
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 66 QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEAR 145 (441)
Q Consensus 66 ~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEar 145 (441)
++++..+..|+..-..|++-.+..+.-.+-+.++..+-... +-....-...+.-+.++++.+--++..-.+++.+-|.+
T Consensus 182 ~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r-~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~ 260 (499)
T COG4372 182 TQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARR-AAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQ 260 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55666666665555555555555555544444443221110 01111122234555566666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 146 AIEAEKKISDLSAKLEKLQKINDE 169 (441)
Q Consensus 146 k~eLEkkleELekklEeLek~~aE 169 (441)
...+|....-++..++.|+.--..
T Consensus 261 lq~lEt~q~~leqeva~le~yyQ~ 284 (499)
T COG4372 261 LQRLETAQARLEQEVAQLEAYYQA 284 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666776666666666666644433
No 162
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.23 E-value=6.4 Score=43.95 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSA 158 (441)
Q Consensus 114 a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELek 158 (441)
+..+..+|+.++..+..+.+.+..++..++....+++.++.+++.
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555554444444444444444444443
No 163
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=92.22 E-value=11 Score=36.04 Aligned_cols=62 Identities=24% Similarity=0.317 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhhhhH
Q 013531 138 EKEALEARAIEAEKKISDLSAKLEKLQ--KINDEQKSKIRKTERALK----EEMMRAKFEATSRSKEL 199 (441)
Q Consensus 138 ~~eeLEark~eLEkkleELekklEeLe--k~~aEQk~qIeelEk~lk----eei~k~k~E~~~kAk~l 199 (441)
....++.+..+++....+....++.+- ......+.-+++++.... ..+.+...+++..|.+-
T Consensus 118 ~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~eEAk~~Ll~~le~e~~~e~a~~ir~~eeeak~~A~~~ 185 (201)
T PF12072_consen 118 RKEELEEREEELEELIEEQQQELEEIAGLTAEEAKEILLEKLEEEARREAAALIRRIEEEAKEEADKK 185 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555544 233344555566666555 34444444444444333
No 164
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.22 E-value=13 Score=42.91 Aligned_cols=138 Identities=22% Similarity=0.261 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----------------hhhHHhhHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE----------------TLNAAEQVDK 113 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~----------------~~~~~~~~~~ 113 (441)
++..|..|.-.|+.+-+..++-..+.++++..+++.-..+..|..+.+-|.+.- +..+++..+.
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a 741 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNA 741 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHH
Confidence 445555555555555555555444445555555555444445544444443211 1112333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEK-------------KISDLSAKLEKLQKINDEQKSKIRKTERA 180 (441)
Q Consensus 114 a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEk-------------kleELekklEeLek~~aEQk~qIeelEk~ 180 (441)
|.....+++..-..|.+++.+-+..++...+...+.+. ++.++..++.+......++...+.+++.+
T Consensus 742 ~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq 821 (970)
T KOG0946|consen 742 ALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQ 821 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 44445555544555555555555555555444443221 23333334444445555666666666666
Q ss_pred HHHHHHH
Q 013531 181 LKEEMMR 187 (441)
Q Consensus 181 lkeei~k 187 (441)
+++.+.+
T Consensus 822 ~~t~~~~ 828 (970)
T KOG0946|consen 822 IQTLLER 828 (970)
T ss_pred HHHHHHH
Confidence 6644443
No 165
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.19 E-value=0.78 Score=42.44 Aligned_cols=60 Identities=27% Similarity=0.441 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEA 144 (441)
Q Consensus 72 ~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEa 144 (441)
|.+|.++...+.+....+..|+.++.+|.+..+. .+|..++..|+.++..++.++..+.+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-------------~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTN-------------EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444446666666667777777888887655433 35556777777777777777777665
No 166
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.16 E-value=7.6 Score=42.89 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhHHHH
Q 013531 50 LKSKIRSLESHIDEK 64 (441)
Q Consensus 50 l~~~i~~Les~i~~~ 64 (441)
=+.+|.+|++.+..-
T Consensus 40 EK~El~~LNDRLA~Y 54 (546)
T KOG0977|consen 40 EKKELQELNDRLAVY 54 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466777777766643
No 167
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=92.04 E-value=1.7 Score=49.26 Aligned_cols=88 Identities=26% Similarity=0.327 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHH
Q 013531 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (441)
Q Consensus 47 l~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe 126 (441)
+.-||++.+||+.++..++++|+++.. .++...-.+-+=.+.+||+==-+|| .|+........-|....+
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~--~~k~~~~~~~n~El~sLqSlN~~Lq--------~ql~es~k~~e~lq~kne 458 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEK--AEKTSGSQDCNLELFSLQSLNMSLQ--------NQLQESLKSQELLQSKNE 458 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHh--hcccCCCcccchhhHHHHHHHHHHH--------HHHHHHHHhHHHHHHhHH
Confidence 445888888888888888888877221 1122111222233344444333443 333333333444444455
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013531 127 NLKKESEKQQKEKEALEA 144 (441)
Q Consensus 127 ~Lkkeie~~ek~~eeLEa 144 (441)
+|-+.++.+..+...+-.
T Consensus 459 ellk~~e~q~~Enk~~~~ 476 (861)
T PF15254_consen 459 ELLKVIENQKEENKRLRK 476 (861)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555544444433
No 168
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.92 E-value=19 Score=42.30 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=35.0
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH------HHHHHHHhh
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS------LQKELSSLQ 100 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~------l~~ei~sLq 100 (441)
.||.+--.++-.|+..-..+++.++.++..|..++..|....+.+.. +.+.|..|.
T Consensus 174 ~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~ 235 (1072)
T KOG0979|consen 174 EELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLE 235 (1072)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555566666666666667777777777777776665543 456677663
No 169
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=91.87 E-value=5.2 Score=34.26 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=15.3
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
.++..|+.++..|-+++..++.++.+
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E 31 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNE 31 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666665555544
No 170
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.85 E-value=15 Score=43.34 Aligned_cols=68 Identities=22% Similarity=0.347 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
.++..++++.+..++..++....+...|....++++....++...+..++......+....++...+.
T Consensus 401 ~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~ 468 (1141)
T KOG0018|consen 401 LERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELV 468 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHH
Confidence 45567777777777777777777777777777777777777776666666666666666666666665
No 171
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=91.80 E-value=16 Score=37.67 Aligned_cols=48 Identities=27% Similarity=0.499 Sum_probs=24.5
Q ss_pred hhHhHHHHHHHH-----HHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 43 LKIELDQLKSKI-----RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (441)
Q Consensus 43 ~~~el~~l~~~i-----~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~ 97 (441)
++..||.++.++ .+|.+.|..++..|.+ ..+.|.+..++|.+++.+|.
T Consensus 53 fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~-------q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 53 FADSLDELKEKLKEMSSTQLRANIAKAEESIAA-------QKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 456666776666 3455555555444444 33333334444444444443
No 172
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.73 E-value=6.9 Score=35.42 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhh
Q 013531 86 SERIVSLQKELSSLQ 100 (441)
Q Consensus 86 ~~~I~~l~~ei~sLq 100 (441)
+..+..+.+++..|+
T Consensus 58 ~~~~~~l~~d~~~l~ 72 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQ 72 (151)
T ss_pred HHHHHHHHhHHHHHH
Confidence 344555555555554
No 173
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=28 Score=39.65 Aligned_cols=127 Identities=24% Similarity=0.287 Sum_probs=55.4
Q ss_pred HHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 55 RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEK 134 (441)
Q Consensus 55 ~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~ 134 (441)
...+++|.-+.+++.++|+.=-.+=..--...+.+..|..+..-|... -.....+....+.+++.|+++...|......
T Consensus 464 ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~-i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~ 542 (698)
T KOG0978|consen 464 EDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQ-ILTLKASVDKLELKIGKLEEQERGLTSNESK 542 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 334555555555665555543222111111223333444444444211 1222233344555556666555555444444
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 135 QQKEKEALE-------ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 135 ~ek~~eeLE-------ark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+..+...+. ....++......|...++..++.....+..++++...+.
T Consensus 543 l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele 597 (698)
T KOG0978|consen 543 LIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELE 597 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333 333334444444444444444444444444444444444
No 174
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.71 E-value=8.9 Score=41.33 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 112 DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKEEMM 186 (441)
Q Consensus 112 ~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lkeei~ 186 (441)
..++.+...++..+.++.+++..+.+....|.........+ ++...+.......+.+.+|.+++.++..-|.
T Consensus 378 k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~k---l~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 378 KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGK---LKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 34455666666666666666666654444444333333333 3333344445555666666777766664333
No 175
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.68 E-value=7.4 Score=47.38 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=10.3
Q ss_pred hHhHHHHHHHHHHHHhhHHHH
Q 013531 44 KIELDQLKSKIRSLESHIDEK 64 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~ 64 (441)
-..+++++.+|..|+..+..+
T Consensus 229 ~~~~~~~~~~le~l~~~~~~l 249 (1353)
T TIGR02680 229 LEQLDEYRDELERLEALERAL 249 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444
No 176
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.64 E-value=4.4 Score=33.06 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 013531 83 QDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 83 ~ek~~~I~~l~~ei~sLq 100 (441)
.+++.+|..+-+.|+.||
T Consensus 7 ~~LE~ki~~aveti~~Lq 24 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQ 24 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555555
No 177
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.59 E-value=18 Score=37.27 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhhH
Q 013531 48 DQLKSKIRSLESHI 61 (441)
Q Consensus 48 ~~l~~~i~~Les~i 61 (441)
++|+.+|..|+.+-
T Consensus 23 ~~l~~~~~sL~qen 36 (310)
T PF09755_consen 23 EQLRKRIESLQQEN 36 (310)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444433
No 178
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.42 E-value=21 Score=38.92 Aligned_cols=40 Identities=15% Similarity=0.355 Sum_probs=29.9
Q ss_pred hHhHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 337 VDNVRVALKPYTKKVVRAYGKFLKSATTYHHQVQASVQEM 376 (441)
Q Consensus 337 vdkv~~~~~Py~e~v~~~~k~~~~~a~~~H~q~Q~~v~~~ 376 (441)
+|++...+--|-.++....--++..+..||--+|+++.|.
T Consensus 567 ld~~~~~~n~~r~~i~k~V~~v~~~~~~fk~~IQssledl 606 (622)
T COG5185 567 LDELKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSLEDL 606 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhHHHH
Confidence 4556666666666677777778888899999999888774
No 179
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.41 E-value=6.6 Score=39.84 Aligned_cols=48 Identities=25% Similarity=0.388 Sum_probs=24.9
Q ss_pred HHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 52 ~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
.+|..||++++-+.++-..|---|..+|..++.--.+..+--.+++.|
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~L 65 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSAL 65 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 467777777776655555544444444444444444444444444444
No 180
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=91.35 E-value=4.5 Score=36.14 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=18.0
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
..++.+|...+.+|+..|+.+.+++..
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~ 31 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEE 31 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777766665555
No 181
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=91.08 E-value=17 Score=35.84 Aligned_cols=49 Identities=29% Similarity=0.370 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklE 161 (441)
.|-.+.-.|++.+..++..+..+......+......++.++.+++.+.+
T Consensus 89 ~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 89 EALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444443333
No 182
>PRK04406 hypothetical protein; Provisional
Probab=91.05 E-value=1.9 Score=35.39 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 137 KEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKE 183 (441)
Q Consensus 137 k~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lke 183 (441)
+.+..++.+..+||.++.-++..+++|++.+..|+..|+.+.+.++.
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~ 50 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKY 50 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888888888899999999999999999988887773
No 183
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.01 E-value=11 Score=39.70 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 013531 82 IQDKSERIVSLQKELSSL 99 (441)
Q Consensus 82 i~ek~~~I~~l~~ei~sL 99 (441)
|......+.+++.+++.|
T Consensus 256 i~~l~~~l~~le~~l~~l 273 (444)
T TIGR03017 256 IQNLKTDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 184
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=90.96 E-value=7.2 Score=46.53 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=32.7
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGK---------DEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k---------~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~ 101 (441)
...+.++++..|+....++.++.++|+.. ..-+.++|..+.+-+..+.+++.++++.++
T Consensus 63 ~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~ 130 (1109)
T PRK10929 63 SLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQD 130 (1109)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566667776666666666665555421 111455555555555556666666655543
No 185
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=90.94 E-value=16 Score=35.19 Aligned_cols=95 Identities=15% Similarity=0.252 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 78 KEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELe 157 (441)
-+..+++-...+..-+..+.+-. .....+..++..|...+...+..+...+.-......+..+-...++...
T Consensus 79 Ae~vV~ee~~sL~~aq~na~aA~--------~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk 150 (188)
T PF05335_consen 79 AEAVVQEEKASLQQAQANAQAAQ--------RAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAK 150 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554443 2233455556666666666666666666666655555555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013531 158 AKLEKLQKINDEQKSKIRKTERA 180 (441)
Q Consensus 158 kklEeLek~~aEQk~qIeelEk~ 180 (441)
.+++.|......-+..++...+.
T Consensus 151 ~Rve~L~~QL~~Ar~D~~~tk~a 173 (188)
T PF05335_consen 151 RRVEELQRQLQAARADYEKTKKA 173 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555555543
No 186
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=90.91 E-value=25 Score=37.52 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHh
Q 013531 85 KSERIVSLQKELSSL 99 (441)
Q Consensus 85 k~~~I~~l~~ei~sL 99 (441)
.++.-..+++++..|
T Consensus 142 ~t~Q~q~lqtrl~~l 156 (499)
T COG4372 142 LTKQAQDLQTRLKTL 156 (499)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 187
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=90.83 E-value=8.3 Score=32.07 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKEEMMRAKFEATS 194 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lkeei~k~k~E~~~ 194 (441)
|++.++.++.+.+.+..+.........+.+.++...-.+++.+.+.+-+.+..-..+...-+++|.+++.+...
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677888888888888888888888888888777777777777777777777777777667888887766543
No 188
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=90.76 E-value=10 Score=32.91 Aligned_cols=109 Identities=19% Similarity=0.298 Sum_probs=56.5
Q ss_pred HHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 013531 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKE 131 (441)
Q Consensus 52 ~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkke 131 (441)
.++...+..|.....++..+...+...+..+..++..+.+--..+... ....+.....|..++.+-.........+
T Consensus 7 re~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~f----lken~~k~~rA~k~a~~e~k~~~~k~~e 82 (126)
T PF13863_consen 7 REMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKF----LKENEAKRERAEKRAEEEKKKKEEKEAE 82 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444445555555444433332222222 2333444556666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 132 SEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 132 ie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
|..+..++..+.+....++..+..+..--+=|+
T Consensus 83 i~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~ 115 (126)
T PF13863_consen 83 IKKLKAELEELKSEISKLEEKLEEYKKYEEFLE 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666665554444333
No 189
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.60 E-value=18 Score=35.30 Aligned_cols=6 Identities=33% Similarity=0.573 Sum_probs=2.2
Q ss_pred HHHHHh
Q 013531 94 KELSSL 99 (441)
Q Consensus 94 ~ei~sL 99 (441)
.+|..+
T Consensus 69 ~~i~~~ 74 (207)
T PF05010_consen 69 AEIQKL 74 (207)
T ss_pred HHHHHH
Confidence 333333
No 190
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.59 E-value=40 Score=39.31 Aligned_cols=16 Identities=44% Similarity=0.690 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESE 133 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie 133 (441)
...+...++.|+..++
T Consensus 363 ~~~l~~~~~~l~~~~~ 378 (908)
T COG0419 363 LKELEERLEELEKELE 378 (908)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444333
No 191
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=90.59 E-value=0.076 Score=59.73 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
++..|+.++.+|+.++..++..+.. .+..+.+.++.|.+|++++..|+
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d-------~~~~~e~le~ei~~L~q~~~eL~ 287 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDD-------LKIELEELEKEIDELRQENEELQ 287 (713)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444333333 33333334444444444444444
No 192
>PF13166 AAA_13: AAA domain
Probab=90.56 E-value=9 Score=42.73 Aligned_cols=15 Identities=7% Similarity=0.177 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhc
Q 013531 366 HHQVQASVQEMLKKH 380 (441)
Q Consensus 366 H~q~Q~~v~~~l~~~ 380 (441)
..-+...++..|+.+
T Consensus 633 ~~~~~N~~RriLE~y 647 (712)
T PF13166_consen 633 AYNIPNVMRRILEAY 647 (712)
T ss_pred HHhhHHHhHHHHHHH
Confidence 445566666666666
No 193
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=90.52 E-value=7 Score=33.83 Aligned_cols=23 Identities=4% Similarity=0.216 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhhHHHHhhhhcc
Q 013531 48 DQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
..+-.++.+++.++..+.+++..
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~ 28 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQ 28 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333
No 194
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=90.45 E-value=3.7 Score=33.51 Aligned_cols=22 Identities=5% Similarity=0.158 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhhhchhh
Q 013531 85 KSERIVSLQKELSSLQKKETLN 106 (441)
Q Consensus 85 k~~~I~~l~~ei~sLq~~~~~~ 106 (441)
..+.|.++-..|+-|+.+|..+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekL 24 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKL 24 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 4677888888888888776443
No 195
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=90.44 E-value=23 Score=38.61 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013531 353 RAYGKFLKSATTYHHQVQASV 373 (441)
Q Consensus 353 ~~~k~~~~~a~~~H~q~Q~~v 373 (441)
..++.-+..|..-|+++.+.+
T Consensus 390 ~klG~~L~~a~~~y~~A~~~L 410 (475)
T PRK10361 390 SAIGQSLDKAQDNYRQAMKKL 410 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555444
No 196
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=90.32 E-value=24 Score=41.60 Aligned_cols=25 Identities=24% Similarity=0.073 Sum_probs=13.5
Q ss_pred CCCchhccch-HHHHHHHHHHHHHHH
Q 013531 381 ELTSPLATKE-LEWFAASALLVLPVI 405 (441)
Q Consensus 381 e~~~~~at~e-l~wflasall~~P~~ 405 (441)
+.+++++..+ =++-++.-|.-+|.-
T Consensus 637 ee~kel~~ekl~ve~l~e~l~~lp~~ 662 (1195)
T KOG4643|consen 637 EETKELMDEKLQVEDLQEKLRELPLE 662 (1195)
T ss_pred HHHhhccccchhHHHHHHHHHhCchh
Confidence 4455554333 455566666666654
No 197
>PF13166 AAA_13: AAA domain
Probab=90.29 E-value=18 Score=40.33 Aligned_cols=14 Identities=7% Similarity=0.197 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 013531 352 VRAYGKFLKSATTY 365 (441)
Q Consensus 352 ~~~~k~~~~~a~~~ 365 (441)
-+.++++++.=-.|
T Consensus 637 ~N~~RriLE~yf~~ 650 (712)
T PF13166_consen 637 PNVMRRILEAYFKF 650 (712)
T ss_pred HHHhHHHHHHHHhh
Confidence 34444444444333
No 198
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.23 E-value=28 Score=40.00 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=46.4
Q ss_pred CchhHhHHHHHHHHHHHHhhHHHHhhhhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 013531 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGK-----DEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (441)
Q Consensus 41 ~~~~~el~~l~~~i~~Les~i~~~~~~i~~k-----~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~ 103 (441)
-.++.|..|||.++.-|+-++.|.++--+.- +-||-.+...---+.+++.+....++.||.++
T Consensus 390 QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kn 457 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKN 457 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Confidence 4579999999999999999999876654332 56676666666666677777777777777543
No 199
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=90.17 E-value=12 Score=33.96 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 149 AEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (441)
Q Consensus 149 LEkkleELekklEeLek~~aEQk~qIeel 177 (441)
+++.+++|=--+.+++..+..++.++..+
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 44444455555555555555555544443
No 200
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=89.87 E-value=6.8 Score=43.45 Aligned_cols=105 Identities=21% Similarity=0.308 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhhhhchhhHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 87 ERIVSLQKELSSLQKKETLNAAEQVD-KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (441)
Q Consensus 87 ~~I~~l~~ei~sLq~~~~~~~~~~~~-~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek 165 (441)
.++.+|..|-..|+.+ ..+.+|+. |.++++.+|++++..++.+.++...+....|...--+..+...-..+.+..-=
T Consensus 329 akVDeL~~E~~vLrgE--lea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLM 406 (832)
T KOG2077|consen 329 AKVDELTCEKDVLRGE--LEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLM 406 (832)
T ss_pred HHHHhhccHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHH
Confidence 4455666777777633 34445554 88888888888888887666555433222222211133333334445555555
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Q 013531 166 INDEQKSKIRKTERALK-EEMMRAKFEAT 193 (441)
Q Consensus 166 ~~aEQk~qIeelEk~lk-eei~k~k~E~~ 193 (441)
....++.++=+++..+. ++|.|+..+..
T Consensus 407 eRNqYKErLMELqEavrWTEMiRAsre~p 435 (832)
T KOG2077|consen 407 ERNQYKERLMELQEAVRWTEMIRASRENP 435 (832)
T ss_pred HHhHHHHHHHHHHHHHhHHHHHHHhhcCc
Confidence 56778888999999999 88888877654
No 201
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=89.80 E-value=17 Score=33.98 Aligned_cols=115 Identities=21% Similarity=0.271 Sum_probs=57.3
Q ss_pred HHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQ 135 (441)
Q Consensus 56 ~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ 135 (441)
.|++.++...+.+-.|.+ .|+........+.++-+++..+++. ....+..+.+.|+.+++.+
T Consensus 31 ~l~~~~~~~~~~~vtk~d----~e~~~~~~~a~~~eLr~el~~~~k~--------------~~~~lr~~~e~L~~eie~l 92 (177)
T PF07798_consen 31 VLNDSLEKVAQDLVTKSD----LENQEYLFKAAIAELRSELQNSRKS--------------EFAELRSENEKLQREIEKL 92 (177)
T ss_pred HHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 344444444444444322 3455555666777777777766521 2344444555555555544
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 136 QKEKEALEARAIEAEKK-ISDLSAKLEKLQKINDEQKSKIRKTERALKEEMMRAKFE 191 (441)
Q Consensus 136 ek~~eeLEark~eLEkk-leELekklEeLek~~aEQk~qIeelEk~lkeei~k~k~E 191 (441)
+.++.. +...+... .-+++.....+......++.+|.+++..+.++|..++.+
T Consensus 93 ~~~L~~---ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~ 146 (177)
T PF07798_consen 93 RQELRE---EINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTE 146 (177)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433322 11111111 123344444555666666777777777777655544443
No 202
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=89.78 E-value=20 Score=34.66 Aligned_cols=111 Identities=12% Similarity=0.149 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lk 129 (441)
|+.=|..++..|.+..+.+..---.-+..+..+.+....+...++....--..|. +..+..|-.+....+.++..|+
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~---EdLAr~Al~~k~~~~~~~~~l~ 105 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGR---EDLARAALIEKQKAQELAEALE 105 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544443333344555556666666666655544333342 2233344444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 130 keie~~ek~~eeLEark~eLEkkleELekklEeL 163 (441)
.+++.+...+..+.....+++.++.+...+...|
T Consensus 106 ~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 106 RELAAVEETLAKLQEDIAKLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555544444444333
No 203
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.72 E-value=7.1 Score=32.56 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 013531 82 IQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 82 i~ek~~~I~~l~~ei~sLq 100 (441)
+..++.+|+.--+.|+.||
T Consensus 6 leqLE~KIqqAvdtI~LLq 24 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQ 24 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666665
No 204
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.64 E-value=30 Score=38.46 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=7.0
Q ss_pred hhhcchhHHhhh
Q 013531 297 KTAVTPHIIRVQ 308 (441)
Q Consensus 297 r~~~~phv~~vk 308 (441)
.+.+..||+.+.
T Consensus 362 ~~~l~e~v~al~ 373 (772)
T KOG0999|consen 362 VDRLTEHVQALR 373 (772)
T ss_pred HHHHHHHHHHHH
Confidence 345666766663
No 205
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=89.60 E-value=47 Score=38.70 Aligned_cols=6 Identities=17% Similarity=0.229 Sum_probs=2.3
Q ss_pred hhhccC
Q 013531 225 HWNAHG 230 (441)
Q Consensus 225 ~w~~hg 230 (441)
.|-.=|
T Consensus 459 ~CPvCg 464 (908)
T COG0419 459 KCPVCG 464 (908)
T ss_pred CCCCCC
Confidence 343333
No 206
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=89.51 E-value=3.1 Score=40.17 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=34.9
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK-EKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~k-e~~i~ek~~~I~~l~~ei~sLq 100 (441)
-|...|+.+|+.|+++|+..+++...+...-..+ .-+=.|.+....=++.++..+.
T Consensus 96 wEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~ 152 (195)
T PF12761_consen 96 WEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELE 152 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677788899999998888877777631111111 1222345666666677777765
No 207
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.49 E-value=15 Score=36.30 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~ 167 (441)
+.++.++.+.|..+.....+++..+..+.+.+|..+.+++...+...+..
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555554444444333
No 208
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=89.44 E-value=11 Score=41.95 Aligned_cols=55 Identities=18% Similarity=0.348 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhcch--------hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 46 ELDQLKSKIRSLESHIDEKTQELKGK--------DEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i~~k--------~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+++--+.+|-.|+..++.+..++..- -+.+......+-.|++.|..|..+|..+|
T Consensus 243 eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~ 305 (629)
T KOG0963|consen 243 ELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLE 305 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444556666666666555554332 23444555556667777777777777776
No 209
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=89.35 E-value=1.3 Score=46.51 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 134 KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 134 ~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
.+..++.++|.+..++|..+.+++..+..+++.+...+..+++++....
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444555555555555555555555555555555555555555555443
No 210
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.26 E-value=8.4 Score=45.36 Aligned_cols=110 Identities=22% Similarity=0.365 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHH
Q 013531 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eV 125 (441)
+++.++++|..+...++..+.+|..+..+....-..+...++.|..++..++..+ .....++....-.+++.+.+..+
T Consensus 235 els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp--~li~~ke~~~~~k~rl~~~~k~i 312 (1141)
T KOG0018|consen 235 ELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERP--ELIKVKENASHLKKRLEEIEKDI 312 (1141)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHhhcchhhccchhHHHHhhhhH
Confidence 3344444444444444444444444333332223334444555555555555511 01112222222233444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 126 e~Lkkeie~~ek~~eeLEark~eLEkkleELe 157 (441)
+..++...++..+++.++.....++......+
T Consensus 313 ~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fe 344 (1141)
T KOG0018|consen 313 ETAKKDYRALKETIERLEKELKAVEGAKEEFE 344 (1141)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333333333
No 211
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.23 E-value=24 Score=34.97 Aligned_cols=62 Identities=16% Similarity=0.353 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
|+.....+...+..+..........+..|+.++.+++..+..|.............+...+.
T Consensus 52 Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 52 LEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444445555555555555555555555555555544443
No 212
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=89.01 E-value=15 Score=39.37 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEA 141 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~ee 141 (441)
.+++.|.++..|+++..+++.+.-.
T Consensus 49 ~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 49 KLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555544444
No 213
>PF14992 TMCO5: TMCO5 family
Probab=88.97 E-value=5.7 Score=40.39 Aligned_cols=123 Identities=24% Similarity=0.347 Sum_probs=61.4
Q ss_pred HHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hchhhHHhhHH-HHHHHHHHHHHHHHHHHHHHH
Q 013531 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK-KETLNAAEQVD-KAHARADELEKQIDNLKKESE 133 (441)
Q Consensus 56 ~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~-~~~~~~~~~~~-~a~~~~~eLe~eVe~Lkkeie 133 (441)
.|++..+.-.|+|+++.+.+=. -|.+++..|++|.+||+-.-- -+-++...... .-+.-..+|+.+-+.|++.-+
T Consensus 4 sLn~dle~d~Q~ldE~Nq~lL~---ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne 80 (280)
T PF14992_consen 4 SLNMDLEKDEQRLDEANQSLLQ---KIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENE 80 (280)
T ss_pred hhccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhH
Confidence 4566666666666665555443 367777788888888876531 11111111111 122224444444455544444
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 134 KQQKEKEALEARAIE-----------AEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (441)
Q Consensus 134 ~~ek~~eeLEark~e-----------LEkkleELekklEeLek~~aEQk~qIeelEk~l 181 (441)
-+...+.++..+..+ +...+++.+..++.+......|+.++.+.+...
T Consensus 81 ~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~ 139 (280)
T PF14992_consen 81 HLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDY 139 (280)
T ss_pred hhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 443334444433322 222345555556666666666666666655433
No 214
>PF13514 AAA_27: AAA domain
Probab=88.79 E-value=30 Score=41.23 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 72 ~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
.+.+...+..+.+....+...+.++..|-
T Consensus 807 ~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ 835 (1111)
T PF13514_consen 807 QEQLEELEEELEQAEEELEELEAELAELL 835 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555554
No 215
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=17 Score=32.56 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE 87 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~ 87 (441)
.+..++=.+..+|...++...-+...-+..|+..++.+.|.++
T Consensus 6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 6 PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555566666666665554444433444444544444443
No 216
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=88.54 E-value=29 Score=34.80 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=6.1
Q ss_pred hhhccCCchHHHH
Q 013531 225 HWNAHGKPAMDVA 237 (441)
Q Consensus 225 ~w~~hg~p~~~~~ 237 (441)
-|-..|.|++...
T Consensus 224 ~~v~~g~~l~~i~ 236 (334)
T TIGR00998 224 QVVSPGQPLMAVV 236 (334)
T ss_pred CEeCCCCeeEEEE
Confidence 3333455655433
No 217
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=88.40 E-value=67 Score=38.85 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHhhhhhhhhHHHh
Q 013531 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA-LK-EEMMRAKFEATSRSKELTEV 202 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~-lk-eei~k~k~E~~~kAk~l~e~ 202 (441)
.+........+...+.+++.+...++......+..+..++....+....+++.++. ++ .--.+++.......+.-+|.
T Consensus 611 ~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~ 690 (1317)
T KOG0612|consen 611 LEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEH 690 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555555555555544444444444445544442 11 00011122222223334444
Q ss_pred hhccCChhHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHH
Q 013531 203 HSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQ 247 (441)
Q Consensus 203 h~~wlppw~a~~~~~~q~~~~~~w~~hg~p~~~~~~~ka~~~~~~ 247 (441)
|+- =|......+++ ...|-.-++++-..+...+.+.-++
T Consensus 691 ~~~----~L~~~e~~~~e--~~~~lseek~ar~k~e~~~~~i~~e 729 (1317)
T KOG0612|consen 691 HRL----RLQDKEAQMKE--IESKLSEEKSAREKAENLLLEIEAE 729 (1317)
T ss_pred HHH----HHhhHHHHHHH--HHHHhcccccHHHHHHHHHHHHHHH
Confidence 442 12222222222 2356666666666665554444333
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.33 E-value=26 Score=37.95 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lk 129 (441)
|.+...--|+.+.+.++ ..|++......++.....+++++..-+++.. ...+....+-+.++.++.++...++
T Consensus 330 leSqr~y~e~~~~e~~q------sqlen~k~~~e~~~~e~~~l~~~~~~~e~~k-k~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 330 LESQRKYYEQIMSEYEQ------SQLENQKQYYELLITEADSLKQESSDLEAEK-KIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred hhHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433344455555554 1333333333333344444444444444222 1223334455666777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 130 keie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+.-..+.+.....-.+..+++ +.++..+...+..+.+++.++.++---++
T Consensus 403 E~n~~l~knq~vw~~kl~~~~---e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 403 EENKKLIKNQDVWRGKLKELE---EREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 555555544444443333333 33333444444444455555554443333
No 219
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.20 E-value=28 Score=38.53 Aligned_cols=159 Identities=21% Similarity=0.270 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHH--
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE-- 120 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~e-- 120 (441)
++.|...|+.+|++|+....+.+..+..-.+.-.++...+..+.+.+.++.--|.+- ++.-++-+.|..+|+.+..+
T Consensus 336 ~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqk-kEec~kme~qLkkAh~~~ddar 414 (654)
T KOG4809|consen 336 FRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQK-KEECSKMEAQLKKAHNIEDDAR 414 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhHhhh
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 013531 121 ----LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKEEMMRAKFEATSRS 196 (441)
Q Consensus 121 ----Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lkeei~k~k~E~~~kA 196 (441)
..+++..|++++...++......+.-.++=..+.+.+....+-.+...+.....-.-.+..+.-+-+.+.|.+..+
T Consensus 415 ~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekkk~a 494 (654)
T KOG4809|consen 415 MNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHKQQLEKKKNA 494 (654)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhhhhhHHhhHHHHHHHHHHHHH
Q ss_pred hhHHHh
Q 013531 197 KELTEV 202 (441)
Q Consensus 197 k~l~e~ 202 (441)
..+-++
T Consensus 495 q~lee~ 500 (654)
T KOG4809|consen 495 QLLEEV 500 (654)
T ss_pred HHHHHH
No 220
>PRK11020 hypothetical protein; Provisional
Probab=88.18 E-value=3.5 Score=36.61 Aligned_cols=49 Identities=12% Similarity=0.249 Sum_probs=36.1
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+..||.+|..+++.++.+.....+.=+. ..|.+..+.|..|..+|++|.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~---------~~i~qf~~E~~~l~k~I~~lk 51 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDA---------EKYAQFEKEKATLEAEIARLK 51 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888876544333 666777777777777887775
No 221
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.02 E-value=33 Score=35.99 Aligned_cols=105 Identities=23% Similarity=0.327 Sum_probs=59.3
Q ss_pred HHHHHHHH-HHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHH
Q 013531 49 QLKSKIRS-LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN 127 (441)
Q Consensus 49 ~l~~~i~~-Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~ 127 (441)
||+.--.+ |+.+|. .|.++|++|.+.-..++|.......|+..-+-|-+. .....+-..+.-.+...||..+..
T Consensus 64 qlk~aa~~llq~kir----k~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nq-L~~~~~vf~k~k~~~q~LE~li~~ 138 (401)
T PF06785_consen 64 QLKTAAGQLLQTKIR----KITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQ-LFHVREVFMKTKGDIQHLEGLIRH 138 (401)
T ss_pred HHHHHHHHHHHHHHH----HHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhcchHHHHHHHHHH
Confidence 44433333 355554 466788888888877777777766666655555322 122233344555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 128 LKKESEKQQKEKEALEARAIEAEKKISDLSA 158 (441)
Q Consensus 128 Lkkeie~~ek~~eeLEark~eLEkkleELek 158 (441)
++++...++-+.+++..+..+.+.+-.+|+.
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr 169 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEESQTLNR 169 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Confidence 6666555555555555555554444444433
No 222
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=87.98 E-value=32 Score=34.78 Aligned_cols=80 Identities=23% Similarity=0.258 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK-------ISDLSAKLEKLQKINDEQKSKIRKTERALKEEM 185 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkk-------leELekklEeLek~~aEQk~qIeelEk~lkeei 185 (441)
.-..+..-|+..+..+..+.+.+.+.+.+||....++|.- +++++.++......++-++..+++.+..+ +.+
T Consensus 88 q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~ll-esv 166 (333)
T KOG1853|consen 88 QFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLL-ESV 166 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHH
Confidence 4444566677777777777777777777777776666653 56666666666666666666666555433 344
Q ss_pred HHHHHhhh
Q 013531 186 MRAKFEAT 193 (441)
Q Consensus 186 ~k~k~E~~ 193 (441)
++++-|++
T Consensus 167 qRLkdEar 174 (333)
T KOG1853|consen 167 QRLKDEAR 174 (333)
T ss_pred HHHHHHHH
Confidence 55555543
No 223
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=87.81 E-value=56 Score=37.27 Aligned_cols=72 Identities=22% Similarity=0.367 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 78 KEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELe 157 (441)
.+..+..+.+.|.-+.+.+..|.+ |+.--...+.+|..+...|++.+..-.++...++-..+.++..++.+.
T Consensus 578 ~e~e~~~k~kq~k~lenk~~~LrK--------qvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~k 649 (786)
T PF05483_consen 578 IECEILKKEKQMKILENKCNNLRK--------QVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLK 649 (786)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677777777777653 222223344455555555555555555555555444444444433333
No 224
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=87.70 E-value=19 Score=33.31 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=19.9
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
.++++|...+..|++.|+.+.++|..
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~ 31 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAA 31 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888887666666
No 225
>PRK02119 hypothetical protein; Provisional
Probab=87.61 E-value=4.4 Score=33.08 Aligned_cols=44 Identities=34% Similarity=0.313 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 139 ~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+..++.+..+||.++.-.+..+++|++.+..|+..|+.+.+.++
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888888899999999999999988888777
No 226
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=87.59 E-value=37 Score=37.35 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013531 80 KAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 80 ~~i~ek~~~I~~l~~ei~sL 99 (441)
+.+...++....+++-+..|
T Consensus 219 ~~L~n~e~i~~~~~~~~~~L 238 (563)
T TIGR00634 219 QRLSNLEKLRELSQNALAAL 238 (563)
T ss_pred HHHhCHHHHHHHHHHHHHHH
Confidence 33333344444444444444
No 227
>PF13514 AAA_27: AAA domain
Probab=87.54 E-value=68 Score=38.32 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=13.9
Q ss_pred HHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 013531 63 EKTQELKGKDEVVAQKEKAIQDKSERIVSLQ 93 (441)
Q Consensus 63 ~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~ 93 (441)
.+..++..-.+.+...+..+......+..|-
T Consensus 805 ~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ 835 (1111)
T PF13514_consen 805 RLQEQLEELEEELEQAEEELEELEAELAELL 835 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444544445544443
No 228
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.51 E-value=70 Score=38.10 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 75 VAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 75 l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
.+.+...|++++.+|+.+...|..++
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~ 468 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLT 468 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555554
No 229
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=87.50 E-value=27 Score=33.39 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEARAIE 148 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEark~e 148 (441)
.++.+.+.+|+++.....+++..+.+-.+.
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~g~~~ 148 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKAGTNH 148 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345566666666666666666666655444
No 230
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=87.43 E-value=27 Score=35.09 Aligned_cols=17 Identities=29% Similarity=0.218 Sum_probs=9.8
Q ss_pred HhhhccCChhHHHHHHh
Q 013531 201 EVHSAWLPPWLAVHLLQ 217 (441)
Q Consensus 201 e~h~~wlppw~a~~~~~ 217 (441)
+..++|++.|+-.-+.-
T Consensus 257 ~~~~~~~~~~~i~llfi 273 (301)
T PF14362_consen 257 EDPSALLASLFIFLLFI 273 (301)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 34556777776654443
No 231
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=87.14 E-value=29 Score=33.23 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=13.0
Q ss_pred HhhhhcchhHHHHHHHHHHHHHHHH
Q 013531 64 KTQELKGKDEVVAQKEKAIQDKSER 88 (441)
Q Consensus 64 ~~~~i~~k~~~l~~ke~~i~ek~~~ 88 (441)
.+++++.+..++...++.+..++..
T Consensus 69 ~E~E~~~~~~el~~~E~rl~~rE~~ 93 (201)
T PF12072_consen 69 LERELKERRKELQRLEKRLQQREEQ 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555444
No 232
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=87.08 E-value=8.5 Score=38.44 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhcCCC
Q 013531 367 HQVQASVQEMLKKHELT 383 (441)
Q Consensus 367 ~q~Q~~v~~~l~~~e~~ 383 (441)
.++..+.+..++.++=+
T Consensus 234 ~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 45555555555555533
No 233
>PRK09343 prefoldin subunit beta; Provisional
Probab=87.08 E-value=21 Score=31.63 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=13.1
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
..++.++-.++..|+.+|....+++..
T Consensus 6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~ 32 (121)
T PRK09343 6 PPEVQAQLAQLQQLQQQLERLLQQKSQ 32 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554444444
No 234
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=87.05 E-value=51 Score=36.04 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013531 357 KFLKSATTYHHQVQASVQE 375 (441)
Q Consensus 357 ~~~~~a~~~H~q~Q~~v~~ 375 (441)
.+...+...|.++-.++.+
T Consensus 370 eIa~~a~~Lydkl~~f~~~ 388 (475)
T PRK10361 370 QIADRASKLYDKMRLFVDD 388 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444433
No 235
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=87.03 E-value=42 Score=35.15 Aligned_cols=24 Identities=25% Similarity=0.583 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhc
Q 013531 46 ELDQLKSKIRSLESHIDEKTQELK 69 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i~ 69 (441)
...++..++.+|+.++..+.+.+.
T Consensus 54 q~~~~~~~~~~L~~ql~~~~~~~~ 77 (372)
T PF04375_consen 54 QLQQLQQQLQALQQQLQQLQQQLE 77 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666666665555554
No 236
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=87.00 E-value=0.19 Score=57.94 Aligned_cols=120 Identities=21% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEA 141 (441)
Q Consensus 62 ~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~ee 141 (441)
.++..+|..-...-...|+.=......|.+|.+.+.++++ .-...++.....++.+.+|...+++....+.++...+..
T Consensus 134 ~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k-~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~k 212 (859)
T PF01576_consen 134 AELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQK-AKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAK 212 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333455555556677777777777763 334456666677777888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 142 LEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
++++..++...+++.+..+..+.........+++++...++
T Consensus 213 L~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~le 253 (859)
T PF01576_consen 213 LQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLE 253 (859)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88888888888888888888888777777788888777777
No 237
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.98 E-value=37 Score=34.38 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE 169 (441)
Q Consensus 114 a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aE 169 (441)
....+.+|+..-+.|+.-.+.-.--.++++.+.+.+-.+.+-|++++.+-+....+
T Consensus 110 l~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~lles 165 (333)
T KOG1853|consen 110 LRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLES 165 (333)
T ss_pred HHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34456666666666655555555555555555555444445555555444433333
No 238
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.91 E-value=37 Score=34.27 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHH
Q 013531 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (441)
Q Consensus 47 l~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke 79 (441)
+.+|+.....|...=.++-++|.+-++-...+-
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~~V 40 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTALKV 40 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHH
Confidence 444555555555555555555555444444443
No 239
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=86.83 E-value=7.2 Score=30.55 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (441)
Q Consensus 116 ~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekkl 160 (441)
+++..|..+|..|...++.+..++..+......+..+.+..+.++
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544444444333333334433
No 240
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=86.76 E-value=54 Score=36.20 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=50.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 107 AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (441)
Q Consensus 107 ~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~l 181 (441)
-.++..++|.++.-+.++++++-+++..+..++..|.+...++.+++..+.-+.+.+.....+.+..-+++...+
T Consensus 203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~ 277 (596)
T KOG4360|consen 203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAEL 277 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 355666778888888888888888888888888888888888877766665555555544444444444444333
No 241
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=86.71 E-value=15 Score=35.31 Aligned_cols=9 Identities=44% Similarity=0.645 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 013531 77 QKEKAIQDK 85 (441)
Q Consensus 77 ~ke~~i~ek 85 (441)
.+|+.|.+.
T Consensus 114 ~le~~~~~~ 122 (190)
T PF05266_consen 114 KLEKKIEEK 122 (190)
T ss_pred HHHHHHHHH
Confidence 334444444
No 242
>PRK04325 hypothetical protein; Provisional
Probab=86.69 E-value=5.1 Score=32.75 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 140 eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
..++.+..+||.++.-++..+++|++.+.+|+..|+.+.+.++
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~ 47 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLR 47 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677788888888888889999999999999988888777
No 243
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=86.68 E-value=51 Score=35.65 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=78.5
Q ss_pred HHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 55 RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAHARADELEKQIDNLKKESE 133 (441)
Q Consensus 55 ~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~-~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie 133 (441)
..=|.-|++++..+.. +-+.--+..+.+-+.....-+..+..+|++. -.|-+.++..-..-++.|+.++.+++.++.
T Consensus 226 ~~sE~~VN~Ls~rar~--D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~ 303 (434)
T PRK15178 226 SFAEQHVNTVSARMQK--ERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYA 303 (434)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777777766655 7788888889999999999999999999854 667777777777778888888888877777
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 013531 134 KQQK-------EKEALEARAIEAEKKISDLSAKL 160 (441)
Q Consensus 134 ~~ek-------~~eeLEark~eLEkkleELekkl 160 (441)
.+.. ++..+..+...+++++++...++
T Consensus 304 ~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 304 QLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 6643 46666777777777766666665
No 244
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=86.63 E-value=0.2 Score=57.67 Aligned_cols=30 Identities=20% Similarity=0.436 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 153 ISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 153 leELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+.+|+.....|+....+++..+++++..++
T Consensus 456 v~eLek~kr~LE~e~~El~~~leE~E~~l~ 485 (859)
T PF01576_consen 456 VHELEKAKRRLEQEKEELQEQLEEAEDALE 485 (859)
T ss_dssp ------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555555554
No 245
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=86.61 E-value=30 Score=35.32 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 013531 78 KEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
-++.+++.+..|.+|-+.+..+|
T Consensus 80 s~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 80 SENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 34445555555566666565555
No 246
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.52 E-value=11 Score=42.88 Aligned_cols=65 Identities=17% Similarity=0.331 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~l 181 (441)
-..+++..+..|+.++++|-.++..++.++..+....+.|..+++++.+..+....+++.+-+.+
T Consensus 559 ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 559 AREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666555555555555555555555555444444433
No 247
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=86.29 E-value=6.8 Score=31.11 Aligned_cols=31 Identities=35% Similarity=0.519 Sum_probs=19.5
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 106 NAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 106 ~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~e 136 (441)
..+.....|+.+..+|+.+|+.|+++++...
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666677777777777766666543
No 248
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=86.29 E-value=25 Score=31.75 Aligned_cols=22 Identities=0% Similarity=0.341 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013531 122 EKQIDNLKKESEKQQKEKEALE 143 (441)
Q Consensus 122 e~eVe~Lkkeie~~ek~~eeLE 143 (441)
.++|..++..++.+..+++.+.
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444444444443333
No 249
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=86.28 E-value=40 Score=38.35 Aligned_cols=10 Identities=10% Similarity=0.541 Sum_probs=5.1
Q ss_pred HHHHHHHHhc
Q 013531 371 ASVQEMLKKH 380 (441)
Q Consensus 371 ~~v~~~l~~~ 380 (441)
..|.|+|-..
T Consensus 453 e~i~DlL~~~ 462 (670)
T KOG0239|consen 453 EAIRDLLSDE 462 (670)
T ss_pred HHHHHhcccc
Confidence 4455665443
No 250
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=86.28 E-value=24 Score=38.57 Aligned_cols=38 Identities=29% Similarity=0.388 Sum_probs=23.8
Q ss_pred CCchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHH
Q 013531 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ 77 (441)
Q Consensus 40 ~~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ 77 (441)
-..++.|.+.++.++..|+.+|..+.-++......+.+
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777777777777776666666554444433
No 251
>PRK00736 hypothetical protein; Provisional
Probab=86.22 E-value=4.7 Score=32.43 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 142 LEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
++.+..+||.++.-++..+++|++.+..|+..|+.+.+.++
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~ 43 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLD 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888999999999999988888777
No 252
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=86.20 E-value=25 Score=31.59 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEV 74 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~ 74 (441)
|...++.|...+++++..|....++
T Consensus 3 l~~~~~~l~~~~~~l~~~l~~~~~~ 27 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERLEELSDE 27 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCHCSCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666664433
No 253
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.88 E-value=34 Score=32.90 Aligned_cols=26 Identities=23% Similarity=0.556 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEA 144 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEa 144 (441)
.+|..+++.++..+++.+.++..|+.
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 254
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=85.85 E-value=23 Score=35.89 Aligned_cols=66 Identities=15% Similarity=0.286 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
.+..+..+++.+++.+..+..+...|+++.......++..++.++.|+...=..-...+.+|..++
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 345556677777777777777777777776666666666777777777776666667777776665
No 255
>PRK11546 zraP zinc resistance protein; Provisional
Probab=85.84 E-value=12 Score=34.58 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 79 EKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 79 e~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~e 136 (441)
.....++-+++.+++.|+.+|......|.+ ++..|.+||..|+..+.++.
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~~pD~~--------kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTANPPDSS--------KINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 334444445666677777777665555533 35555555555555554443
No 256
>PRK04406 hypothetical protein; Provisional
Probab=85.80 E-value=7.2 Score=32.05 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 132 SEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (441)
Q Consensus 132 ie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~l 181 (441)
++.++.++..||.+..-.+.-+++|+..+-..++.++.+..++..+...+
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555554433
No 257
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=85.79 E-value=4.3 Score=32.58 Aligned_cols=41 Identities=32% Similarity=0.444 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 142 LEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
++.+..+||.++.-++..+++|++.+..|+..|+.+++.++
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777888888887777776
No 258
>PRK12705 hypothetical protein; Provisional
Probab=85.77 E-value=22 Score=39.13 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHHhcccccchHHHHHhhhhhhHHHHHH
Q 013531 232 PAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWV 272 (441)
Q Consensus 232 p~~~~~~~ka~~~~~~~~~w~~P~l~~~~~K~~pv~~~~w~ 272 (441)
|.-.+....+++.....|.-.|=-++.+..+....+.++..
T Consensus 248 p~rreia~~~l~~Li~dgri~p~rIeevv~~~~~~~~~~i~ 288 (508)
T PRK12705 248 PIRREIARLTLEKLLADGRIHPARIEEYVQKANEEFKQKIY 288 (508)
T ss_pred ccchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665555555555554444444333
No 259
>PRK02793 phi X174 lysis protein; Provisional
Probab=85.76 E-value=6.2 Score=32.07 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 141 eLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
.++++..+||.++.-.+..+++|++.+..|+..|+.+.+.++
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~ 46 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR 46 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888999999999999988888776
No 260
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.60 E-value=61 Score=35.54 Aligned_cols=91 Identities=18% Similarity=0.272 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lk 129 (441)
+..+|+.|.+..+.+...|++ -.+....|+++..+-.+|++...-+++..+.. -+|.+...|. +..|+
T Consensus 269 i~~~i~~lk~~n~~l~e~i~e----a~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~m----k~K~~~~~g~----l~kl~ 336 (622)
T COG5185 269 INTDIANLKTQNDNLYEKIQE----AMKISQKIKTLREKWRALKSDSNKYENYVNAM----KQKSQEWPGK----LEKLK 336 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHhcchH----HHHHH
Confidence 445555555554444433333 22233444444444445555554444222111 1233333333 33445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013531 130 KESEKQQKEKEALEARAIEAEKK 152 (441)
Q Consensus 130 keie~~ek~~eeLEark~eLEkk 152 (441)
.+++.-+.++..|.+...++..+
T Consensus 337 ~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 337 SEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 55555555555555555554444
No 261
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.58 E-value=38 Score=39.24 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 74 VVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 74 ~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+..+.++++...-..|.++.-+|++|+
T Consensus 651 ~~e~l~~~~~kyK~lI~~lD~~~e~lk 677 (970)
T KOG0946|consen 651 YHEELDDIQQKYKGLIRELDYQIENLK 677 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 334445555555555555555555553
No 262
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=85.57 E-value=4.4 Score=32.48 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162 (441)
Q Consensus 116 ~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEe 162 (441)
+|+.+|+.++.-++..++.++.-+..+......++.++..+..++.+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433333
No 263
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.54 E-value=23 Score=39.87 Aligned_cols=86 Identities=20% Similarity=0.299 Sum_probs=42.4
Q ss_pred hhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS----LQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEK 134 (441)
Q Consensus 59 s~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~----l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~ 134 (441)
=+++-++.+....-+.|..+|-.|+++..++.+ ||+++-|-+ ..+.+--+|..+|.+|+=-+..
T Consensus 125 LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrt------------sLETqKlDLmaevSeLKLklta 192 (861)
T KOG1899|consen 125 LQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRT------------SLETQKLDLMAEVSELKLKLTA 192 (861)
T ss_pred ehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhh------------hHHHHHhHHHHHHHHhHHHHHH
Confidence 345555566666666667777777777666543 233322221 2233334444555555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013531 135 QQKEKEALEARAIEAEKKISDL 156 (441)
Q Consensus 135 ~ek~~eeLEark~eLEkkleEL 156 (441)
++++..+.|.+....|..+.++
T Consensus 193 lEkeq~e~E~K~R~se~l~qev 214 (861)
T KOG1899|consen 193 LEKEQNETEKKLRLSENLMQEV 214 (861)
T ss_pred HHHHhhhHHHHHHhHHHHHHHH
Confidence 4444444444444444433333
No 264
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=85.51 E-value=42 Score=36.96 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013531 78 KEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sL 99 (441)
..+.+.+....+.++..++..+
T Consensus 271 ~~~~l~~~~~~l~d~~~~l~~~ 292 (563)
T TIGR00634 271 LAEQVGNALTEVEEATRELQNY 292 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444443
No 265
>PRK00295 hypothetical protein; Provisional
Probab=85.49 E-value=6.1 Score=31.79 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 142 LEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
++++..+||.++.-++..+++|++.+..|+..|+.+++.++
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~ 43 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMA 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888888888888887776
No 266
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.45 E-value=19 Score=29.46 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk 179 (441)
|+..|..+=..|..+..+++.|..+...+.....+|....+.+.........+|+.+-.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333444444444444444444444444433
No 267
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=85.36 E-value=12 Score=32.78 Aligned_cols=70 Identities=26% Similarity=0.432 Sum_probs=45.2
Q ss_pred hhHhHHHHHHHHHHHHh-hHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHH
Q 013531 43 LKIELDQLKSKIRSLES-HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les-~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eL 121 (441)
++.|-..||+...-|.. .|++..+ -..+.+.+..++..|..+++|++||. =|..-|
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k--------~~~L~e~Lk~ke~~LRk~eqE~dSL~---------------FrN~QL 59 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAK--------NAELKEQLKEKEQALRKLEQENDSLT---------------FRNQQL 59 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 34566677777777743 3333211 12355666777788888888888885 255667
Q ss_pred HHHHHHHHHHHHHH
Q 013531 122 EKQIDNLKKESEKQ 135 (441)
Q Consensus 122 e~eVe~Lkkeie~~ 135 (441)
+++|+.|+.+++..
T Consensus 60 ~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 60 TKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHh
Confidence 78888887777743
No 268
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.35 E-value=41 Score=33.36 Aligned_cols=68 Identities=26% Similarity=0.387 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+.+..+++.....|+.+..+.......|+.+..+++..+..+....+.-+......+..+........
T Consensus 53 e~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 53 EQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777778888887778888888888888888877777777777777777777777776666555
No 269
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=85.19 E-value=76 Score=36.26 Aligned_cols=24 Identities=13% Similarity=0.446 Sum_probs=11.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Q 013531 107 AAEQVDKAHARADELEKQIDNLKK 130 (441)
Q Consensus 107 ~~~~~~~a~~~~~eLe~eVe~Lkk 130 (441)
+.+....+++...-|..++...+-
T Consensus 280 q~E~Lkes~~~qe~L~~eL~~~K~ 303 (786)
T PF05483_consen 280 QHENLKESNEEQEHLLQELEDIKQ 303 (786)
T ss_pred HHHHHHHhHHhHHHHHHHHHHHHH
Confidence 334444555555555555444433
No 270
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=85.17 E-value=30 Score=37.18 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=41.9
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHH
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~ 123 (441)
...+.+|+-+++|-++..+++..+..-..-+ -.-.-.+.+.++.+|.-||.+++...++-+. +++-...+..
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~-------~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~-~~a~~~~~t~ 83 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAE-------SRAIKAKLQEKELELNRLQEENTQLNEERVR-EEATEKTLTV 83 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3445556777777776666665444432222 2222345566677777777666666666554 4444444444
Q ss_pred HHHHH
Q 013531 124 QIDNL 128 (441)
Q Consensus 124 eVe~L 128 (441)
.+..+
T Consensus 84 ~~~~~ 88 (459)
T KOG0288|consen 84 DVLIA 88 (459)
T ss_pred HHHHH
Confidence 44443
No 271
>PHA03332 membrane glycoprotein; Provisional
Probab=85.07 E-value=27 Score=41.39 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=12.2
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhh
Q 013531 45 IELDQLKSKIRSLESHIDEKTQEL 68 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i 68 (441)
..+-|....|..+.|.|..++..|
T Consensus 884 ~~llqnaaaia~mksaIg~tNaAV 907 (1328)
T PHA03332 884 NQLLQATAATAEMASKIGGLNARV 907 (1328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666555543333
No 272
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=85.06 E-value=9 Score=31.95 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhc
Q 013531 46 ELDQLKSKIRSLESHIDEKTQELK 69 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i~ 69 (441)
+...|+.++..+.++|..++.++.
T Consensus 6 ~~~~l~~~l~~~~~q~~~l~~~~~ 29 (106)
T PF01920_consen 6 KFQELNQQLQQLEQQIQQLERQLR 29 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444433
No 273
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=85.04 E-value=49 Score=34.00 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAHARADELEKQIDNLKKESEKQ 135 (441)
Q Consensus 72 ~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~-~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ 135 (441)
.+-+.-.++.+.+..+.+.+.+..+...|++. ..+.+.+.......+.+|+.++..++.++..+
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556678888888888888888888888755 33444444445555666666666665555444
No 274
>PRK00295 hypothetical protein; Provisional
Probab=85.00 E-value=7.2 Score=31.35 Aligned_cols=41 Identities=12% Similarity=0.055 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (441)
Q Consensus 116 ~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleEL 156 (441)
+|+.+|+.++.-.+..|+.+|.-+..+......++.++..+
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433333333333
No 275
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=84.91 E-value=23 Score=29.98 Aligned_cols=42 Identities=33% Similarity=0.475 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekkl 160 (441)
++++.+++.|......+..++...+++.+.++.--.++...+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL 76 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRL 76 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555554444444333
No 276
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=84.88 E-value=9.8 Score=41.32 Aligned_cols=41 Identities=32% Similarity=0.320 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (441)
Q Consensus 120 eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekkl 160 (441)
++.+..+.+..++..+...+.+++.+..++++++++++.++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443333
No 277
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=84.78 E-value=47 Score=33.91 Aligned_cols=69 Identities=23% Similarity=0.279 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhh
Q 013531 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK---EEMMRAKFEA 192 (441)
Q Consensus 124 eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk---eei~k~k~E~ 192 (441)
++.-|+.+...+...-+.++..+..+.-.+.--+..+.-|+.....-+.+|+.++..+. .++-+.+..+
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444443333333344444455555555556666666665 4444444433
No 278
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=84.64 E-value=41 Score=32.74 Aligned_cols=54 Identities=28% Similarity=0.359 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 129 KKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 129 kkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
..+++..+.+.+.-++...+++....-+.+.+..+......+..+.+..+..++
T Consensus 94 E~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik 147 (205)
T KOG1003|consen 94 EGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELK 147 (205)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 555666666666666666666665555555555665555555555555555555
No 279
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=84.38 E-value=43 Score=35.69 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Q 013531 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV 90 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~ 90 (441)
-+..||.+..++...|.++..++..+-..+...+..+.+.+..|.
T Consensus 286 ~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~ 330 (458)
T COG3206 286 TIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIA 330 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHH
Confidence 355666666666666666666666666666666666666655543
No 280
>PRK00846 hypothetical protein; Provisional
Probab=84.35 E-value=9.8 Score=31.61 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 138 EKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 138 ~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+-+.++++..+||.++.-.+..+++|++.+..|+..|+.+...++
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~ 51 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 51 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888889999999999999998888877
No 281
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=84.32 E-value=26 Score=30.25 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 74 VVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 74 ~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
.+......+..++..+.+..-.+..|
T Consensus 18 ~~~~l~~q~~~le~~~~E~~~v~~eL 43 (110)
T TIGR02338 18 QLQAVATQKQQVEAQLKEAEKALEEL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 282
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=84.06 E-value=16 Score=29.54 Aligned_cols=9 Identities=33% Similarity=0.733 Sum_probs=4.0
Q ss_pred HHHHHHHhh
Q 013531 92 LQKELSSLQ 100 (441)
Q Consensus 92 l~~ei~sLq 100 (441)
|+.+|.+||
T Consensus 3 Lea~~~~Lr 11 (69)
T PF14197_consen 3 LEAEIATLR 11 (69)
T ss_pred HHHHHHHHH
Confidence 344444444
No 283
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.04 E-value=68 Score=34.75 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeel 177 (441)
.-+.++.-|+.++..|+..+-.+....+.|.........+++.+..++-..++....+...+...
T Consensus 301 nlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrf 365 (502)
T KOG0982|consen 301 NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRF 365 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777787777777777777777776677666666666655555555544444443
No 284
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=84.02 E-value=53 Score=37.38 Aligned_cols=53 Identities=6% Similarity=0.207 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc-hhhHHhhHHHHHHHHHHHHHHHHHHHH
Q 013531 78 KEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAHARADELEKQIDNLKK 130 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sLq~~~-~~~~~~~~~~a~~~~~eLe~eVe~Lkk 130 (441)
.++.+.+..+...+.+..++..+++. ..+...+....-.++.+|+.|+..|+.
T Consensus 272 L~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~ 325 (726)
T PRK09841 272 LQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTF 325 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555433 223222333333445555555555443
No 285
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=84.02 E-value=19 Score=32.83 Aligned_cols=94 Identities=15% Similarity=0.224 Sum_probs=47.4
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hchhhHHhhHHHHHHHHHH
Q 013531 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK-KETLNAAEQVDKAHARADE 120 (441)
Q Consensus 42 ~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~-~~~~~~~~~~~~a~~~~~e 120 (441)
..+.||++-+..|.+|.+.+..-++-+.++-- .+.+-++.+.+ .||--+.- .......-+.+-+
T Consensus 12 ~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~s-------eldqA~~~~~e--ae~k~~~~~a~~P~~~~~~~wq------ 76 (136)
T PF11570_consen 12 AARAELDQADEDIATLQERQASAEQALNGRRS-------ELDQANKKVKE--AEIKQDEFFANNPPHEYGRGWQ------ 76 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH--HHHHHCCCCTT-TTSSCHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHH--HHhcccccccCCCccccccHHH------
Confidence 34677888888888888777776666555444 44444455554 33433210 1111122222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKK 152 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkk 152 (441)
.+|..+++++...+......+.++++++..
T Consensus 77 --lkvr~a~~dv~nkq~~l~AA~~~l~~~~~e 106 (136)
T PF11570_consen 77 --LKVRRAQKDVQNKQNKLKAAQKELNAADEE 106 (136)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445555555555555555555555554433
No 286
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=83.94 E-value=25 Score=39.01 Aligned_cols=97 Identities=14% Similarity=0.217 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhccCChhHHHHHH
Q 013531 137 KEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLL 216 (441)
Q Consensus 137 k~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lkeei~k~k~E~~~kAk~l~e~h~~wlppw~a~~~~ 216 (441)
..+++++.-+.+.+..++..++..++++......+.+++++++.-+..+.++.........-+.++-+.-+-+-+...+.
T Consensus 216 ~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~~~~~~~~~~~~L~g~~i~~~~~ 295 (555)
T TIGR03545 216 KIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAIKSGDLKNFAVDLFGPEIRKYLQ 295 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCCCcccHHHHHHHHhhHHHHHHHH
Confidence 33334444444444444555555556666666666666666666666665555444444444555555555554444444
Q ss_pred hhhhhhhhhhhccCCchHHHHH
Q 013531 217 QCQSLIETHWNAHGKPAMDVAI 238 (441)
Q Consensus 217 ~~q~~~~~~w~~hg~p~~~~~~ 238 (441)
.+. .|-.-+.|-+....
T Consensus 296 ~~~-----~~y~~~~p~i~~~~ 312 (555)
T TIGR03545 296 KFL-----KYYDQAEPLLNKSK 312 (555)
T ss_pred HHH-----HHHHHHhHhhccch
Confidence 443 46555666665553
No 287
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=83.93 E-value=21 Score=34.03 Aligned_cols=18 Identities=44% Similarity=0.654 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013531 116 ARADELEKQIDNLKKESE 133 (441)
Q Consensus 116 ~~~~eLe~eVe~Lkkeie 133 (441)
+++.+|+.++..|++++.
T Consensus 110 ~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 110 EELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555544
No 288
>PRK11519 tyrosine kinase; Provisional
Probab=83.80 E-value=63 Score=36.77 Aligned_cols=51 Identities=8% Similarity=0.250 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc-hhhHHhhHHHHHHHHHHHHHHHHHH
Q 013531 78 KEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAHARADELEKQIDNL 128 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sLq~~~-~~~~~~~~~~a~~~~~eLe~eVe~L 128 (441)
.++.+.+..+...+.+..++..+.+. ..+...+....-.++.+++.++.+|
T Consensus 272 L~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l 323 (719)
T PRK11519 272 LAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNEL 323 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555554433 2222222223333344444444444
No 289
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.64 E-value=73 Score=36.59 Aligned_cols=9 Identities=56% Similarity=0.586 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 013531 91 SLQKELSSL 99 (441)
Q Consensus 91 ~l~~ei~sL 99 (441)
.+++++.+|
T Consensus 583 ~l~e~~~~l 591 (717)
T PF10168_consen 583 ELQEERKSL 591 (717)
T ss_pred HHHHHHHHH
Confidence 333333333
No 290
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=83.58 E-value=73 Score=34.81 Aligned_cols=70 Identities=29% Similarity=0.416 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---H-----------HHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIE----AEKKISDLSA---K-----------LEKLQKINDEQKSKI 174 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~e----LEkkleELek---k-----------lEeLek~~aEQk~qI 174 (441)
.--.+.+++..+++-++...+..+.....+..++.. .|+.++.|.. . ++.|....+..+..+
T Consensus 211 ~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~ 290 (511)
T PF09787_consen 211 EYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEI 290 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHH
Confidence 333456677777777777777666666666643322 4555555554 1 455556666666666
Q ss_pred HHHHHHHH
Q 013531 175 RKTERALK 182 (441)
Q Consensus 175 eelEk~lk 182 (441)
+.++.+++
T Consensus 291 ~~l~~Qi~ 298 (511)
T PF09787_consen 291 QLLERQIE 298 (511)
T ss_pred HHHHHHHH
Confidence 66666663
No 291
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=83.57 E-value=4.1 Score=42.74 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=14.5
Q ss_pred chhHHHhhhHHHHHHHHhhhh
Q 013531 279 EPHVQTLKTKTIEACEATKTA 299 (441)
Q Consensus 279 ~p~Ve~~ktk~~p~~ea~r~~ 299 (441)
-|-+..-+.+|.++...+|..
T Consensus 289 S~~~l~kRr~~~~i~~~Lr~~ 309 (370)
T PF02994_consen 289 SPETLQKRRKFNPIKKKLREK 309 (370)
T ss_dssp THHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHc
Confidence 556667777888877766644
No 292
>PRK00736 hypothetical protein; Provisional
Probab=83.44 E-value=7.8 Score=31.17 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (441)
Q Consensus 116 ~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleEL 156 (441)
+|+.+|+.++.-++..++.+|.-+..+......+..++..+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445544444444444444444444433333333333
No 293
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=83.36 E-value=29 Score=30.07 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEAR 145 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEar 145 (441)
.+.++..|..++..+..++..++..
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~ 103 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEK 103 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 294
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=83.17 E-value=99 Score=37.74 Aligned_cols=53 Identities=25% Similarity=0.363 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhh
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE---RIVSLQKELSSLQKK 102 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~---~I~~l~~ei~sLq~~ 102 (441)
+-..+......|+.+.+++.+.-+++...+..-.|+++ +...+..+|..+|++
T Consensus 793 ~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~ 848 (1294)
T KOG0962|consen 793 FLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKE 848 (1294)
T ss_pred HHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666777777777766666666666665554 334455566666543
No 295
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=83.14 E-value=13 Score=30.59 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 77 QKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALE 143 (441)
Q Consensus 77 ~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLE 143 (441)
..+..|.++.+....|-=.|..|.........++...+.....+|.-++..|++++....+.+..++
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555543332233344445555555566666666555555555554443
No 296
>PF14282 FlxA: FlxA-like protein
Probab=83.11 E-value=8.8 Score=33.28 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=9.7
Q ss_pred hHhHHHHHHHHHHHHhhHHHH
Q 013531 44 KIELDQLKSKIRSLESHIDEK 64 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~ 64 (441)
...+..|+..|..|..+|.++
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l 38 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQEL 38 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444
No 297
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=83.08 E-value=77 Score=37.61 Aligned_cols=19 Identities=16% Similarity=-0.001 Sum_probs=8.6
Q ss_pred hhcchhHHHHhhhhhhHHH
Q 013531 309 EVVDPYFQEAKKFSKPYID 327 (441)
Q Consensus 309 ~~v~Py~~e~ke~~~py~~ 327 (441)
.++..+-+-+.-|+++.-+
T Consensus 480 ~Fi~~~~eD~~lf~~~i~d 498 (1072)
T KOG0979|consen 480 AFICCDSEDYLLFVKKIKD 498 (1072)
T ss_pred eeeeechHHHHHHHHHhhh
Confidence 3444444444444444443
No 298
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=82.98 E-value=45 Score=31.92 Aligned_cols=136 Identities=26% Similarity=0.382 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHH
Q 013531 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (441)
Q Consensus 47 l~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe 126 (441)
|--|..||.+||-.-..-+..++.-+.+...-.++.......-..-.++. + +..-+-..+...|++|-.-|++|++
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~-~---~q~~dl~~qL~aAEtRCslLEKQLe 81 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQEL-S---KQNQDLSSQLSAAETRCSLLEKQLE 81 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchh-h---hccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466777777655554444444444444433333321111000000000 0 0022445667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 013531 127 NLKKESEKQQKEKEALEARAIEAEKK--------------ISDLSAKLEKLQKINDEQKSKIRKTERALK-EEMM 186 (441)
Q Consensus 127 ~Lkkeie~~ek~~eeLEark~eLEkk--------------leELekklEeLek~~aEQk~qIeelEk~lk-eei~ 186 (441)
..++-+...+.+...+-.+...++.. ++-|+.+.-.|.....--+..|..+|..+. ++-+
T Consensus 82 yMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehq 156 (178)
T PF14073_consen 82 YMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQ 156 (178)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888776666665555554443 333444444444455556677888888887 4433
No 299
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=82.97 E-value=48 Score=32.27 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=15.3
Q ss_pred HHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Q 013531 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV 90 (441)
Q Consensus 56 ~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~ 90 (441)
.+..++.+.++.-++....++-.++.....+..+.
T Consensus 29 ~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e 63 (205)
T KOG1003|consen 29 TALQKLEEAEQAADESERGMKVIENRAQKLEEKME 63 (205)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHH
Confidence 33444444444444444444444444444443333
No 300
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=82.93 E-value=15 Score=39.88 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 151 KKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (441)
Q Consensus 151 kkleELekklEeLek~~aEQk~qIeelEk~l 181 (441)
....++..+.++|+......+..++++.+++
T Consensus 109 ~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 109 SETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555555555444
No 301
>PRK10698 phage shock protein PspA; Provisional
Probab=82.86 E-value=49 Score=32.30 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhh----HHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQ----VDKAHARADELEKQI 125 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~----~~~a~~~~~eLe~eV 125 (441)
|+.=|..++..+.+..+.+..---.-+..+..+.+....|...+..-..--.+|.-+.... ...+..++..|+.++
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~ 108 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEV 108 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555544444332222333444455555555555544333223332221111 112334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 126 e~Lkkeie~~ek~~eeLEark~eLEkkleELe 157 (441)
+.....++.+..++..|+.+..++..+...|-
T Consensus 109 ~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 109 TLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 302
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.85 E-value=27 Score=29.24 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 75 VAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 75 l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+.++|.-|+..-..|.-|+-||+-|.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELK 31 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666663
No 303
>PRK09343 prefoldin subunit beta; Provisional
Probab=82.64 E-value=34 Score=30.30 Aligned_cols=34 Identities=12% Similarity=0.256 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 149 LEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
++++++.++.++..+++.....+.++.+++..+.
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444333
No 304
>PRK04325 hypothetical protein; Provisional
Probab=82.56 E-value=10 Score=31.01 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARA 146 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark 146 (441)
|+.+|+.++.-++..|++++.-+..+....
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I 39 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTL 39 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333333
No 305
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=82.49 E-value=28 Score=29.61 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 013531 79 EKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 79 e~~i~ek~~~I~~l~~ei~sLq 100 (441)
...+..+-..+..+++.+.-|.
T Consensus 16 ~~~~~~k~~~~~~lE~k~~rl~ 37 (96)
T PF08647_consen 16 SEQADKKVKELTILEQKKLRLE 37 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444
No 306
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=82.28 E-value=33 Score=39.55 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhcCCCchhcc
Q 013531 346 PYTKKVVRAYGKFLKSATTYH------------HQVQASVQEMLKKHELTSPLAT 388 (441)
Q Consensus 346 Py~e~v~~~~k~~~~~a~~~H------------~q~Q~~v~~~l~~~e~~~~~at 388 (441)
=.++.+...+..|+..|.... -.+...|.++|.+|++.+.|-.
T Consensus 701 ~~~~eA~~~l~~~ld~a~~~g~~~v~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~ 755 (771)
T TIGR01069 701 QRSEEALDRLEKFLNDALLAGYEVVLIIHGKGSGKLRKGVQELLKNHPKVKSFRD 755 (771)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEcCCChhHHHHHHHHHhcCCcceeeecc
Confidence 345556666666666655443 3688899999999999888744
No 307
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=82.15 E-value=29 Score=33.50 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEA 144 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEa 144 (441)
+-+++.++|+.+...|+++++.+.-+...++.
T Consensus 113 ~tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 113 ETEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666666666666666666655554443
No 308
>PRK02793 phi X174 lysis protein; Provisional
Probab=82.09 E-value=10 Score=30.85 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleEL 156 (441)
++|+.+|+.++.-.+..|+.+|+-+..+......+..++..+
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444444444443333333333
No 309
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=81.98 E-value=10 Score=37.80 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (441)
Q Consensus 123 ~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~ 167 (441)
..+.=+..+-|....+..+||.+.......+..|..+++.|...+
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777777666666677776666666443
No 310
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=81.94 E-value=32 Score=34.85 Aligned_cols=105 Identities=17% Similarity=0.246 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 013531 75 VAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK------------QIDNLKKESEKQQKEKEAL 142 (441)
Q Consensus 75 l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~------------eVe~Lkkeie~~ek~~eeL 142 (441)
...+.+.+++..++|.++|++|+.-.=. .+.+.|. ...|+-..|.. +|.+|.-++.-+++..+++
T Consensus 179 F~rlK~ele~tk~Klee~QnelsAwkFT--PdS~tGK-~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seEl 255 (330)
T KOG2991|consen 179 FLRLKGELEQTKDKLEEAQNELSAWKFT--PDSKTGK-MLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEEL 255 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeeec--CCCcchH-HHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHH
Confidence 3445677788888999999998764211 1111100 12222222222 2334444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 143 Eark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
.+...++-.-+.+|...++.++..+--++.++.+.++.|+
T Consensus 256 kssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq 295 (330)
T KOG2991|consen 256 KSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQ 295 (330)
T ss_pred HHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555545555555554443
No 311
>PRK00846 hypothetical protein; Provisional
Probab=81.85 E-value=8.9 Score=31.84 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 013531 79 EKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 79 e~~i~ek~~~I~~l~~ei~sLq 100 (441)
|+.|.++++.|...+..|+.|+
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~ 47 (77)
T PRK00846 26 EQALTELSEALADARLTGARNA 47 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 312
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=81.75 E-value=36 Score=38.40 Aligned_cols=112 Identities=20% Similarity=0.204 Sum_probs=53.4
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHH
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~e 124 (441)
.+-+.+..+++.|+-.-+.+--+..--++.+..--+-|.+++--|...++.+.+- +|....-.=....||.|
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnat--------EEmLQqellsrtsLETq 175 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNAT--------EEMLQQELLSRTSLETQ 175 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchH--------HHHHHHHHHhhhhHHHH
Confidence 3444456666666666666555555544444444444444555544444444322 22222222223444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
--+|=.++..++-+...+|.++++-|++....+..+++++
T Consensus 176 KlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 176 KLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred HhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 4444444555555555555555554444444444444444
No 313
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=81.60 E-value=86 Score=34.67 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 114 AHARADELEKQIDNLKKESEKQQKEKEALEA 144 (441)
Q Consensus 114 a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEa 144 (441)
+.+...++.+.|++|-.+|+.++.+.....+
T Consensus 410 ~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ks 440 (531)
T PF15450_consen 410 MEKHLKEVQEKVDSLPQQIEEVSDKCDLHKS 440 (531)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3344555555555555555555554444433
No 314
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=81.48 E-value=62 Score=39.39 Aligned_cols=92 Identities=20% Similarity=0.297 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 73 EVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVD--KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (441)
Q Consensus 73 ~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~--~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLE 150 (441)
+.+...-+.|+..-+.+.+...+|.-|++.+......++. -+-+++.-|++.+.+|.+.+..+..++..+.++..-+.
T Consensus 833 ~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~ 912 (1294)
T KOG0962|consen 833 ESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLK 912 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchh
Confidence 3333334444555555556666666666655444444333 33345566666777777777777777666666665555
Q ss_pred HHHHHHHHHHHHHH
Q 013531 151 KKISDLSAKLEKLQ 164 (441)
Q Consensus 151 kkleELekklEeLe 164 (441)
..+.++.+..+++.
T Consensus 913 ~~l~e~~s~~e~~k 926 (1294)
T KOG0962|consen 913 VELEEAQSEKEELK 926 (1294)
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444443
No 315
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=81.38 E-value=5.9 Score=30.92 Aligned_cols=17 Identities=0% Similarity=0.319 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 013531 84 DKSERIVSLQKELSSLQ 100 (441)
Q Consensus 84 ek~~~I~~l~~ei~sLq 100 (441)
+.++.+..+++.|.+++
T Consensus 4 elEn~~~~~~~~i~tvk 20 (55)
T PF05377_consen 4 ELENELPRIESSINTVK 20 (55)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 316
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=81.31 E-value=51 Score=31.43 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=6.4
Q ss_pred chhHhHHHHHHHHH
Q 013531 42 PLKIELDQLKSKIR 55 (441)
Q Consensus 42 ~~~~el~~l~~~i~ 55 (441)
+.+.+.-+|...++
T Consensus 30 ~tR~dVi~L~e~Ld 43 (189)
T PF10211_consen 30 ATRQDVIQLQEWLD 43 (189)
T ss_pred CCHHHHHHHHHHHH
Confidence 34445544444443
No 317
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=81.28 E-value=23 Score=30.06 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHhh
Q 013531 87 ERIVSLQKELSSLQ 100 (441)
Q Consensus 87 ~~I~~l~~ei~sLq 100 (441)
..-.++..+++.|+
T Consensus 36 ~~~r~l~~~~e~lr 49 (108)
T PF02403_consen 36 QERRELQQELEELR 49 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 318
>PRK10869 recombination and repair protein; Provisional
Probab=81.20 E-value=71 Score=35.34 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKK 130 (441)
Q Consensus 118 ~~eLe~eVe~Lkk 130 (441)
+.++++++..|.+
T Consensus 298 l~~ie~Rl~~l~~ 310 (553)
T PRK10869 298 LAELEQRLSKQIS 310 (553)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 319
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.18 E-value=45 Score=33.23 Aligned_cols=8 Identities=38% Similarity=0.526 Sum_probs=4.1
Q ss_pred HHHHHHhh
Q 013531 93 QKELSSLQ 100 (441)
Q Consensus 93 ~~ei~sLq 100 (441)
-.-+.+||
T Consensus 118 RAGLktL~ 125 (290)
T COG4026 118 RAGLKTLQ 125 (290)
T ss_pred HHHHHHHh
Confidence 34455565
No 320
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.13 E-value=29 Score=28.51 Aligned_cols=62 Identities=23% Similarity=0.386 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 76 AQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK 152 (441)
Q Consensus 76 ~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkk 152 (441)
.++|.-|+..-..|.=||-||.-|..++ +.|..++.+++...+.++.+.+.+..+......+
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEkn---------------n~l~~e~q~~q~~reaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKN---------------NSLSQEVQNAQHQREALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555553222 2333444444444444444444444444444433
No 321
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=81.11 E-value=24 Score=41.16 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~ 103 (441)
+..++..|+.+|++.+...+....+..++..+-+..++.+..|..++.-||.+.
T Consensus 472 ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~ 525 (913)
T KOG0244|consen 472 LSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESER 525 (913)
T ss_pred hhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhccccccc
Confidence 444444444444444444444443333444444444555555555554444433
No 322
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=81.09 E-value=1.1e+02 Score=35.08 Aligned_cols=111 Identities=25% Similarity=0.318 Sum_probs=61.9
Q ss_pred CchhHhHHHHHHHHHHHHhhHHHHhhhhcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHH
Q 013531 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKD-EVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARAD 119 (441)
Q Consensus 41 ~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~-~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~ 119 (441)
..+..||.+||.+=+.|-+++.--..-|..+= .--.+-+..+...+.....|+.++.--++.. .....|...|.....
T Consensus 474 ~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~l-a~l~~QL~~Ar~~lq 552 (739)
T PF07111_consen 474 TDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESL-AELEEQLEAARKSLQ 552 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHH
Confidence 34577788877777776666543222222211 1111224445555555666666654444322 233566667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 013531 120 ELEKQIDNLKKESEKQQKEKE-ALEARAIEAEKK 152 (441)
Q Consensus 120 eLe~eVe~Lkkeie~~ek~~e-eLEark~eLEkk 152 (441)
+.+.+...|+.++..+....+ +++.+.+++|.+
T Consensus 553 es~eea~~lR~EL~~QQ~~y~~alqekvsevEsr 586 (739)
T PF07111_consen 553 ESTEEAAELRRELTQQQEVYERALQEKVSEVESR 586 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888777777765554 455555555543
No 323
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=81.09 E-value=56 Score=36.08 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 147 IEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (441)
Q Consensus 147 ~eLEkkleELekklEeLek~~aEQk~qIeelE 178 (441)
..=|.++..+...+..|++....|...|+.+.
T Consensus 483 ~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 483 RNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455666666666666666666666666654
No 324
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=80.98 E-value=0.49 Score=53.36 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhHH
Q 013531 46 ELDQLKSKIRSLESHID 62 (441)
Q Consensus 46 el~~l~~~i~~Les~i~ 62 (441)
++..++.+|.+|+..|.
T Consensus 62 e~~~~k~~l~~Le~e~~ 78 (722)
T PF05557_consen 62 ELIELKAQLNQLEYELE 78 (722)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 325
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=80.93 E-value=44 Score=32.01 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=33.6
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
...|+..|+-+|..|+.++.++-+++..-+.+|+.+++.+ .+.++|.+|++|.
T Consensus 77 ~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-----t~eemQe~i~~L~ 129 (201)
T KOG4603|consen 77 SDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-----TTEEMQEEIQELK 129 (201)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ChHHHHHHHHHHH
Confidence 3467777888888887777777666666444444444332 3455666666664
No 326
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.89 E-value=20 Score=32.20 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHH
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEK 80 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~ 80 (441)
.++.+|..+++.+--....++.+|++-+..+.+++.
T Consensus 13 ~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 13 AQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555555555555555555555543
No 327
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=80.89 E-value=21 Score=39.18 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE 169 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aE 169 (441)
+.++...+..|+++++... ...|...+.+-..+..++.++....+.++.
T Consensus 464 L~~a~~~i~~LqDEL~TTr---~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~ 512 (518)
T PF10212_consen 464 LKEANQNISRLQDELETTR---RNYEEQLSMMSEHLASMNEQLAKQREEIQT 512 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333 233344444444444444444444444333
No 328
>PF15294 Leu_zip: Leucine zipper
Probab=80.87 E-value=46 Score=33.99 Aligned_cols=80 Identities=25% Similarity=0.356 Sum_probs=41.1
Q ss_pred CchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhchhhHHhhHHHHHHH
Q 013531 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS---ERIVSLQKELSSLQKKETLNAAEQVDKAHAR 117 (441)
Q Consensus 41 ~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~---~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~ 117 (441)
..+.-|++.|+.+-..|++++..+++.-.. .+.|++ ..+.+++........+... .--...
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~----------~l~Ek~kl~~~L~~lq~~~~~~~~k~~~------~~~~q~ 191 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATS----------ALDEKSKLEAQLKELQDEQGDQKGKKDL------SFKAQD 191 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhccccc------cccccc
Confidence 335677777888888887777766544333 233332 2333333322222211111 112235
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~e 136 (441)
+.+|+..+..++.+++..-
T Consensus 192 l~dLE~k~a~lK~e~ek~~ 210 (278)
T PF15294_consen 192 LSDLENKMAALKSELEKAL 210 (278)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 6777777777766555443
No 329
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=80.75 E-value=80 Score=33.29 Aligned_cols=22 Identities=18% Similarity=0.352 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013531 78 KEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sL 99 (441)
++..+.+-.+.|.+++.+|..|
T Consensus 263 Le~ql~~~~~ei~~~e~~i~~L 284 (384)
T PF03148_consen 263 LEWQLKKTLQEIAEMEKNIEDL 284 (384)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 330
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.53 E-value=53 Score=37.94 Aligned_cols=42 Identities=26% Similarity=0.392 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHHHHHH--------HH----HHHHHHHHHHHHhcCCCchhcc
Q 013531 347 YTKKVVRAYGKFLKSATT--------YH----HQVQASVQEMLKKHELTSPLAT 388 (441)
Q Consensus 347 y~e~v~~~~k~~~~~a~~--------~H----~q~Q~~v~~~l~~~e~~~~~at 388 (441)
.++.+...+..|+..|.. .| -.+...|.++|.+|++.+.|-.
T Consensus 713 ~~eeA~~~l~~fl~~a~~~g~~~v~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~ 766 (782)
T PRK00409 713 RYEEALERLDKYLDDALLAGYGEVLIIHGKGTGKLRKGVQEFLKKHPSVKSFRD 766 (782)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEEcCCChhHHHHHHHHHHcCCCceeeeee
Confidence 345555555555555442 11 2678889999999998887743
No 331
>PRK10698 phage shock protein PspA; Provisional
Probab=80.51 E-value=60 Score=31.72 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhcc
Q 013531 235 DVAIQKALEKKAQAGK 250 (441)
Q Consensus 235 ~~~~~ka~~~~~~~~~ 250 (441)
+.+.+++.+.-+++.+
T Consensus 169 ~rmE~ki~~~Ea~aea 184 (222)
T PRK10698 169 ESFERRIDQMEAEAES 184 (222)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 4466666666666554
No 332
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=80.48 E-value=7.2 Score=40.27 Aligned_cols=92 Identities=21% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lk 129 (441)
++.++.+++..+.+.+..+.....+|...+..|..+.........+...|+ .+++..+
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~----------------------~~~~~~~ 276 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELE----------------------EEIEETE 276 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 130 keie~~ek~~eeLEark~eLEkkleELekklEeL 163 (441)
..++..+.=+..|..+.......+.+++.....+
T Consensus 277 ~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 277 RKLERAEKLISGLSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHH
T ss_pred hhhccHHHHHhhhcchhhhHHHHHHHHHHHhccc
No 333
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=80.47 E-value=36 Score=35.76 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=12.9
Q ss_pred HHHHHHHHhhHHHHhhhhcc
Q 013531 51 KSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 51 ~~~i~~Les~i~~~~~~i~~ 70 (441)
-++++.|+.+|..+|+-|=.
T Consensus 208 la~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 208 LARAADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 45667777777776666555
No 334
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.44 E-value=16 Score=38.15 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE 169 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aE 169 (441)
.++++++.+.++.++|+..-+.++..+.+|+....+||.+...++..++-|.....+
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344445555566666666666666666666666666666666666666666555444
No 335
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=80.37 E-value=25 Score=40.45 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=9.4
Q ss_pred hHHHHhhhhhhHHHHHHh
Q 013531 314 YFQEAKKFSKPYIDQVAT 331 (441)
Q Consensus 314 y~~e~ke~~~py~~qa~~ 331 (441)
.+.+|...++.|+++|..
T Consensus 702 ~~~eA~~~l~~~ld~a~~ 719 (771)
T TIGR01069 702 RSEEALDRLEKFLNDALL 719 (771)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 445555555555555443
No 336
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=80.32 E-value=95 Score=37.03 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 157 SAKLEKLQKINDEQKSKIRKTERAL 181 (441)
Q Consensus 157 ekklEeLek~~aEQk~qIeelEk~l 181 (441)
+..+..++.........+..+...+
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~l 852 (1047)
T PRK10246 828 QQELAQLAQQLRENTTRQGEIRQQL 852 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333333443333333
No 337
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=80.06 E-value=69 Score=32.14 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=16.9
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
...+.+++..+.++++.+..+...++.
T Consensus 54 ~~~~~~a~a~l~~a~a~~~~~~~~~~~ 80 (327)
T TIGR02971 54 TAELDVARTQLDEAKARLAQVRAGAKK 80 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 345566667777777777666555444
No 338
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=80.03 E-value=36 Score=36.15 Aligned_cols=17 Identities=12% Similarity=0.397 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHhhHH
Q 013531 46 ELDQLKSKIRSLESHID 62 (441)
Q Consensus 46 el~~l~~~i~~Les~i~ 62 (441)
...++..+++.++..+.
T Consensus 261 ~~~e~~q~Ld~l~~rL~ 277 (438)
T PRK00286 261 DRAELLQRLQQLQQRLA 277 (438)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34556666666665554
No 339
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=79.75 E-value=49 Score=30.23 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 131 ESEKQQKEKEALEARAIEAEKKISDLSAK 159 (441)
Q Consensus 131 eie~~ek~~eeLEark~eLEkkleELekk 159 (441)
.+....+++..-+......+..+.+++..
T Consensus 78 kvr~a~~dv~nkq~~l~AA~~~l~~~~~e 106 (136)
T PF11570_consen 78 KVRRAQKDVQNKQNKLKAAQKELNAADEE 106 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444445554444444444444444433
No 340
>PRK02119 hypothetical protein; Provisional
Probab=79.72 E-value=15 Score=29.92 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 135 QQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (441)
Q Consensus 135 ~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~ 180 (441)
++.++..||.+..-.|.-+++|+..+-..++.++.+..++..+...
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444443
No 341
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=79.70 E-value=61 Score=34.04 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
++.+=.||..- -.+=+..|-..|-+++..+...-..+.+-|.|-..||
T Consensus 58 i~~re~qlk~a---a~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~ 105 (401)
T PF06785_consen 58 IGRREKQLKTA---AGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQ 105 (401)
T ss_pred hhHHHHHHHHH---HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555432 2334556666777777777777777777777777776
No 342
>PRK10869 recombination and repair protein; Provisional
Probab=79.40 E-value=93 Score=34.42 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 72 DEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 72 ~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
+++|.+.-+.+...++....+++-++.|
T Consensus 207 ~eeL~~e~~~L~n~e~i~~~~~~~~~~L 234 (553)
T PRK10869 207 FEQIDEEYKRLANSGQLLTTSQNALQLL 234 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555566666666666666
No 343
>PF15456 Uds1: Up-regulated During Septation
Probab=79.27 E-value=39 Score=30.40 Aligned_cols=82 Identities=23% Similarity=0.270 Sum_probs=42.9
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh---hHHhhHHHHHHHHHH
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL---NAAEQVDKAHARADE 120 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~---~~~~~~~~a~~~~~e 120 (441)
-.|.+.|+.++..|.+.|+.+...+. .+.+|.+.-..+..+...++. -..+.+.++++...+
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~---------------le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~ 85 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA---------------LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAE 85 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHH
Confidence 35677788888888777776533222 345555555556666443331 122334455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKE 140 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~e 140 (441)
++..++++-.++..++++..
T Consensus 86 ~~rk~ee~~~eL~~le~R~~ 105 (124)
T PF15456_consen 86 SDRKCEELAQELWKLENRLA 105 (124)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 55555555444444444333
No 344
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=79.26 E-value=14 Score=32.29 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 013531 47 LDQLKSKIRSLESHIDEK 64 (441)
Q Consensus 47 l~~l~~~i~~Les~i~~~ 64 (441)
+.+++.++..|.+.|..+
T Consensus 8 ~~ql~~~i~~l~~~i~~l 25 (126)
T TIGR00293 8 LQILQQQVESLQAQIAAL 25 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 345
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=79.09 E-value=96 Score=33.21 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=17.9
Q ss_pred HHHhhhhhhHHHHHHhhhcccchhHHHhhhHHHHHHH
Q 013531 258 TIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACE 294 (441)
Q Consensus 258 ~~~~K~~pv~~~~w~~~~~~v~p~Ve~~ktk~~p~~e 294 (441)
.+..|++.++=. +.+-+-.-|.++-.+..|+.+
T Consensus 338 ~~l~k~inllL~----l~~vlLv~vSt~~~~~~Pl~~ 370 (395)
T PF10267_consen 338 ALLGKLINLLLT----LLTVLLVFVSTVANCPLPLTR 370 (395)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHhcCCcHHhh
Confidence 445566555433 444445555666666666544
No 346
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.95 E-value=57 Score=31.10 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKE 140 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~e 140 (441)
+-+++..|++++..+..++.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444
No 347
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=78.93 E-value=19 Score=28.20 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 013531 78 KEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+...|.+++.+|..|+++|.+|+
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666665
No 348
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=78.82 E-value=13 Score=34.27 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=14.5
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
..+++.+...|..|++.|..++..+.+
T Consensus 12 ~a~lq~l~~qie~L~~~i~~l~~~~~e 38 (145)
T COG1730 12 AAQLQILQSQIESLQAQIAALNAAISE 38 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544
No 349
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=78.79 E-value=58 Score=30.54 Aligned_cols=112 Identities=12% Similarity=0.214 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lk 129 (441)
....-..|+..+.+....+.+-+..+......+..+......-..-|..+-..|++-.-.-...-+.-.+.|..++..++
T Consensus 13 r~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e 92 (158)
T PF09486_consen 13 RRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAE 92 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777777777777777778888888888888888888888776655544434444444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (441)
Q Consensus 130 keie~~ek~~eeLEark~eLEkkleELekklE 161 (441)
.+...+.................+..+...++
T Consensus 93 ~~~a~l~~~l~~~~~~ia~~~raIarn~a~id 124 (158)
T PF09486_consen 93 AELAALRQALRAAEDEIAATRRAIARNDARID 124 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 55554444444444443343333333333333
No 350
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=78.78 E-value=59 Score=37.39 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 013531 172 SKIRKTERALK 182 (441)
Q Consensus 172 ~qIeelEk~lk 182 (441)
.+|+.++++|+
T Consensus 695 ~kieal~~qik 705 (762)
T PLN03229 695 EKIEALEQQIK 705 (762)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 351
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=78.41 E-value=22 Score=38.59 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 127 NLKKESEKQQKEKEALEARAIEAEKKIS 154 (441)
Q Consensus 127 ~Lkkeie~~ek~~eeLEark~eLEkkle 154 (441)
++.+..+-...+..++..+..+++.++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIR 155 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333333333
No 352
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=78.35 E-value=0.67 Score=52.30 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=0.0
Q ss_pred chhHhHHHHHHHHHH-----------HHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 42 PLKIELDQLKSKIRS-----------LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 42 ~~~~el~~l~~~i~~-----------Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
.++.++.+|+.++.+ |+..+.++..+++.....+..++..+........+++.++..+
T Consensus 65 ~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~ 133 (722)
T PF05557_consen 65 ELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEA 133 (722)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555543 3444455555555555555555544444444444444444444
No 353
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.32 E-value=15 Score=30.22 Aligned_cols=43 Identities=33% Similarity=0.360 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 140 eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
..+|++..+||.+++..+..+++|+....+|+.-++++...+.
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr 46 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLR 46 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888999999999999999988888877
No 354
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=78.26 E-value=26 Score=34.43 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 013531 149 AEKKISDLS 157 (441)
Q Consensus 149 LEkkleELe 157 (441)
+.++.++++
T Consensus 184 l~Kq~e~~~ 192 (216)
T KOG1962|consen 184 LKKQSEGLQ 192 (216)
T ss_pred HHHHHHHcc
Confidence 333333333
No 355
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=78.04 E-value=58 Score=33.12 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEe 162 (441)
.++++.+++..+.+...+...++.+...+.+.+..+.++++.
T Consensus 219 ~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 219 KEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555555554445544443
No 356
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=78.02 E-value=27 Score=32.88 Aligned_cols=66 Identities=27% Similarity=0.383 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 89 IVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 89 I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeL 163 (441)
.-++.+-|.-||+-.+. ......+..+...|+.++..+..+++.|+.+...++++...++...+.|
T Consensus 79 ~ltl~~vI~fLq~l~~~---------~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 79 SLTLQDVISFLQNLKTT---------NPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred cCCHHHHHHHHHHHHhc---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888743211 1122334444444555555555555544444444444443333333333
No 357
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.59 E-value=8.7 Score=38.62 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=14.9
Q ss_pred HHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 013531 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ 93 (441)
Q Consensus 54 i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~ 93 (441)
|..|+.+|..|..-|.. +|..|-|++++|..|.
T Consensus 227 i~~lkeeia~Lkk~L~q-------kdq~ileKdkqisnLK 259 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQ-------KDQLILEKDKQISNLK 259 (305)
T ss_pred HHHHHHHHHHHHHHHhh-------hHHHHHhhhhhhhccC
Confidence 44444444444444444 4444444445554443
No 358
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=77.51 E-value=43 Score=28.32 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013531 78 KEKAIQDKSERIVSLQKELS 97 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~ 97 (441)
.+..+..++..|..|++.|.
T Consensus 6 le~al~rL~~aid~LE~~v~ 25 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVD 25 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555554443
No 359
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=77.38 E-value=11 Score=40.98 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKEALEAR 145 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~eeLEar 145 (441)
+.++.+|+++++.|+.+++.+..+..+++++
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~K 105 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRR 105 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3456666666666655544444444444333
No 360
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.14 E-value=43 Score=32.32 Aligned_cols=51 Identities=27% Similarity=0.373 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
.+.....|++.++...+.+....+.+........+-+..-.++..++.+|+
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslk 129 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLK 129 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 455555566666655555555555554444333333333335555555554
No 361
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=77.03 E-value=65 Score=30.14 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~l 181 (441)
+=+.++|.-+++-|+.+|.++.-|-.--...|+...+.-...++.++.++.+-..+.++-...
T Consensus 80 dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eS 142 (159)
T PF04949_consen 80 DPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSES 142 (159)
T ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777766655544444444444444444444444444444444444433
No 362
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=77.03 E-value=78 Score=31.06 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHhhH
Q 013531 46 ELDQLKSKIRSLESHI 61 (441)
Q Consensus 46 el~~l~~~i~~Les~i 61 (441)
-|..+..++..+++.+
T Consensus 6 KL~~i~e~~~~f~~~l 21 (247)
T PF06705_consen 6 KLASINERFSGFESDL 21 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 363
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=76.99 E-value=0.78 Score=51.76 Aligned_cols=9 Identities=11% Similarity=0.423 Sum_probs=0.0
Q ss_pred hcchhHHhh
Q 013531 299 AVTPHIIRV 307 (441)
Q Consensus 299 ~~~phv~~v 307 (441)
.+..|+..+
T Consensus 541 ~le~~~~~l 549 (713)
T PF05622_consen 541 KLEEHLEKL 549 (713)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 334444433
No 364
>PF15294 Leu_zip: Leucine zipper
Probab=76.88 E-value=92 Score=31.83 Aligned_cols=51 Identities=39% Similarity=0.520 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQK 171 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk 171 (441)
|..+++.|+.+.+.+..++..++......-.....++..+.+++.....++
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~ 180 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQK 180 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 666777777777777777777777776655556666666666666444333
No 365
>PF14992 TMCO5: TMCO5 family
Probab=76.85 E-value=51 Score=33.67 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEAR 145 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEar 145 (441)
....+..++.+......+++++.++++.
T Consensus 111 lq~sk~~lqql~~~~~~qE~ei~kve~d 138 (280)
T PF14992_consen 111 LQFSKNKLQQLLESCASQEKEIAKVEDD 138 (280)
T ss_pred cHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555443
No 366
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=76.49 E-value=1.1e+02 Score=32.30 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=13.8
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhh
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQ 66 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~ 66 (441)
+..++.+++..+.+++.+++.+..
T Consensus 94 ~~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 94 LRERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666665543
No 367
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=76.25 E-value=45 Score=27.96 Aligned_cols=29 Identities=31% Similarity=0.358 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 154 SDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 154 eELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
..+...++.++........-++..+..+.
T Consensus 75 ~~l~~q~~~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 75 KVLEQQLESLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455444444555555555444
No 368
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=76.22 E-value=1.3e+02 Score=33.29 Aligned_cols=84 Identities=18% Similarity=0.306 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 79 EKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN-LKKESEKQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 79 e~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~-Lkkeie~~ek~~eeLEark~eLEkkleELe 157 (441)
|..+...-..|.+|.+.|..|+.+-... + ..-+.++.++..+..+ .++.++++..=-.+.++...++..+++.+-
T Consensus 350 e~sv~~l~~~lkDLd~~~~aLs~rld~q--E--qtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~Lp 425 (531)
T PF15450_consen 350 EDSVAELMRQLKDLDDHILALSWRLDLQ--E--QTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLP 425 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334444455555555555555442221 1 1233444444444322 244444444444455555555555555555
Q ss_pred HHHHHHHHH
Q 013531 158 AKLEKLQKI 166 (441)
Q Consensus 158 kklEeLek~ 166 (441)
..++++.+.
T Consensus 426 qqI~~vs~K 434 (531)
T PF15450_consen 426 QQIEEVSDK 434 (531)
T ss_pred HHHHHHHHH
Confidence 555444433
No 369
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=76.17 E-value=2 Score=37.57 Aligned_cols=12 Identities=8% Similarity=0.191 Sum_probs=4.4
Q ss_pred HHHHHHHHhhHH
Q 013531 51 KSKIRSLESHID 62 (441)
Q Consensus 51 ~~~i~~Les~i~ 62 (441)
...+..|..++.
T Consensus 31 ~~~~~~l~~e~~ 42 (131)
T PF05103_consen 31 AEELERLQRENA 42 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 370
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=76.17 E-value=17 Score=31.37 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhHHHHhhhhcc
Q 013531 49 QLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 49 ~l~~~i~~Les~i~~~~~~i~~ 70 (441)
+|...+.+|+..|..+.+.+..
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~ 24 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQK 24 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444444
No 371
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=76.14 E-value=26 Score=35.00 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (441)
Q Consensus 149 LEkkleELekklEeLek~~aEQk~qIeelEk~ 180 (441)
...+..||+.++..+...+...+.+++.+..+
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444
No 372
>PRK11519 tyrosine kinase; Provisional
Probab=76.14 E-value=1.1e+02 Score=34.94 Aligned_cols=14 Identities=14% Similarity=0.022 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhcC
Q 013531 368 QVQASVQEMLKKHE 381 (441)
Q Consensus 368 q~Q~~v~~~l~~~e 381 (441)
.+...|...-.++.
T Consensus 624 ~~~~ll~~l~~~yD 637 (719)
T PRK11519 624 RFAELVNWASKNYD 637 (719)
T ss_pred HHHHHHHHHHhcCC
Confidence 34444444434444
No 373
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=76.10 E-value=94 Score=31.56 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 120 ELEKQIDNLKKESEKQQKEKEALEA 144 (441)
Q Consensus 120 eLe~eVe~Lkkeie~~ek~~eeLEa 144 (441)
.|+..|++-+.+++...++...|.+
T Consensus 194 ~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 194 NLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555544443
No 374
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=76.07 E-value=99 Score=31.80 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013531 160 LEKLQKINDEQKSKIRKTER 179 (441)
Q Consensus 160 lEeLek~~aEQk~qIeelEk 179 (441)
.+.|+.+.+-.+..++.+-.
T Consensus 280 ~~~L~re~~~a~~~y~~~l~ 299 (362)
T TIGR01010 280 YQRLVLQNELAQQQLKAALT 299 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33343333333333333333
No 375
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=76.06 E-value=63 Score=29.56 Aligned_cols=8 Identities=0% Similarity=0.314 Sum_probs=3.1
Q ss_pred HHHhhHHH
Q 013531 56 SLESHIDE 63 (441)
Q Consensus 56 ~Les~i~~ 63 (441)
.|...++.
T Consensus 23 ~l~~~~~~ 30 (135)
T TIGR03495 23 NARADLER 30 (135)
T ss_pred HHHHHHHH
Confidence 34333433
No 376
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=75.74 E-value=43 Score=27.49 Aligned_cols=61 Identities=33% Similarity=0.370 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 120 ELEKQIDNLKKESEKQQKEKEALEARAIE--------AEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (441)
Q Consensus 120 eLe~eVe~Lkkeie~~ek~~eeLEark~e--------LEkkleELekklEeLek~~aEQk~qIeelEk~ 180 (441)
+.+++++.|+++.=++.=++.-|+.+... +-++--+|...++.|.....+.+..+.+++++
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444332 22222234444444444444444444444443
No 377
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.72 E-value=1.3e+02 Score=32.92 Aligned_cols=168 Identities=23% Similarity=0.244 Sum_probs=0.0
Q ss_pred ccCCCCCCCccCccCCCCchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 013531 24 IQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (441)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~ 103 (441)
..++.++...+.-+.++++...|+..+......++.-..+..+..-+ =..++.++....+..+|++-|+ +-
T Consensus 210 ~t~dPa~p~~p~~~~passe~ee~eel~eq~eeneel~ae~kqh~v~--------~~ales~~sq~~e~~selE~ll-kl 280 (521)
T KOG1937|consen 210 LTDDPALPPKPIFAKPASSEEEEVEELTEQNEENEELQAEYKQHLVE--------YKALESKRSQFEEQNSELEKLL-KL 280 (521)
T ss_pred ecCCCCCCCccccCCCccccchhHHHHHhhhhhHHHHHHHHHHHHHH--------HHHHHhhhHHHHHHHHHHHHHH-Hh
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 013531 104 TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK- 182 (441)
Q Consensus 104 ~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk- 182 (441)
..-.-+-....++.+.+|+..+.++...+..+. ...+.-+.-+..+...+...++.++-.-.+ -.+|++++..+.
T Consensus 281 kerl~e~l~dgeayLaKL~~~l~~~~~~~~~lt---qqwed~R~pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a 356 (521)
T KOG1937|consen 281 KERLIEALDDGEAYLAKLMGKLAELNKQMEELT---QQWEDTRQPLLQKKLQLREELKNLETEDEE-IRRIQELEQDLEA 356 (521)
T ss_pred HHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHH
Q ss_pred --HHHHHHHHhhhhhhhhHHHhhhccCCh
Q 013531 183 --EEMMRAKFEATSRSKELTEVHSAWLPP 209 (441)
Q Consensus 183 --eei~k~k~E~~~kAk~l~e~h~~wlpp 209 (441)
+++.+.......=-++|.. +|+
T Consensus 357 ~~eei~~~eel~~~Lrsele~-----lp~ 380 (521)
T KOG1937|consen 357 VDEEIESNEELAEKLRSELEK-----LPD 380 (521)
T ss_pred HHHHHHhhHHHHHHHHHHHhc-----CCc
No 378
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=75.67 E-value=1e+02 Score=32.49 Aligned_cols=43 Identities=19% Similarity=0.345 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeL 163 (441)
|+.|++.|-.+......++.+...+.+++..-+.++...+.++
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334444433333333333333333333333333333333333
No 379
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=75.58 E-value=1.4e+02 Score=33.15 Aligned_cols=89 Identities=22% Similarity=0.303 Sum_probs=48.5
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhchhhHHhhHHHHHHHHH
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKG----KDEVVAQKEKAIQDKSERIVSLQKEL-SSLQKKETLNAAEQVDKAHARAD 119 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~----k~~~l~~ke~~i~ek~~~I~~l~~ei-~sLq~~~~~~~~~~~~~a~~~~~ 119 (441)
.+.+.|+..|..|.++|.+...+|.+ +-.+....=....+.-..+.++..+| +.++++........+..|.++..
T Consensus 7 l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~ 86 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQ 86 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 34445666666666666666655543 22222222233344455566777888 55554444445555556666666
Q ss_pred HHHHHHHHHHHHHH
Q 013531 120 ELEKQIDNLKKESE 133 (441)
Q Consensus 120 eLe~eVe~Lkkeie 133 (441)
.|..|+......++
T Consensus 87 ~L~~eL~~~~~~l~ 100 (593)
T PF06248_consen 87 ELKRELEENEQLLE 100 (593)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655543333
No 380
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=75.47 E-value=2e+02 Score=35.10 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=19.9
Q ss_pred cCcchHhHHHhhcccHHHHHHHHHHHHHHH
Q 013531 333 AKPHVDNVRVALKPYTKKVVRAYGKFLKSA 362 (441)
Q Consensus 333 skP~vdkv~~~~~Py~e~v~~~~k~~~~~a 362 (441)
..-+++...+.+.|.-.++...++-+-+.+
T Consensus 1722 ~~~~L~~~~aeL~~Le~r~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1722 NEQALEDKAAELAGLEKRVESVLDHINERV 1751 (1758)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Confidence 344566677778888777777776664443
No 381
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=75.43 E-value=31 Score=37.62 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISD-LSAKLEKLQKINDEQKSKIRKT 177 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleE-LekklEeLek~~aEQk~qIeel 177 (441)
++++++.|..+.+++.++.+.|..+...+..+++. ++....++++.....+.+++++
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~ 128 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL 128 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444332 2233334444443333333333
No 382
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=75.35 E-value=39 Score=30.60 Aligned_cols=60 Identities=22% Similarity=0.338 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKEE 184 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lkee 184 (441)
+.-|+.+=...+.+....+-+++++..+++.|+.+...++..+..+..+|.-+|.+++.+
T Consensus 6 l~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqE 65 (134)
T PF08232_consen 6 LHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQE 65 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888889999999999999999999999999999999999999999999999855
No 383
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=75.30 E-value=30 Score=39.95 Aligned_cols=45 Identities=36% Similarity=0.381 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 120 eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
+++..+++|..+..+++.+.++++..+.+++...++++.+.+.++
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 561 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ 561 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 384
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=75.12 E-value=67 Score=30.37 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013531 136 QKEKEALEARAIEAEKK 152 (441)
Q Consensus 136 ek~~eeLEark~eLEkk 152 (441)
..+...+......+...
T Consensus 141 ~~D~~~l~~~~~~l~~~ 157 (184)
T PF05791_consen 141 QKDSRNLKTDVDELQSI 157 (184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 33333333333333333
No 385
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=75.09 E-value=73 Score=29.80 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHh
Q 013531 87 ERIVSLQKELSSL 99 (441)
Q Consensus 87 ~~I~~l~~ei~sL 99 (441)
.....|+.+|+.|
T Consensus 80 ~~~e~L~~eie~l 92 (177)
T PF07798_consen 80 SENEKLQREIEKL 92 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444444
No 386
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=74.95 E-value=40 Score=26.77 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (441)
Q Consensus 130 keie~~ek~~eeLEark~eLEkkleELekklEeLek~~ 167 (441)
.++.+.....-..+.+..+.+.+-.+|..+++.|.+..
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444433
No 387
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=74.59 E-value=47 Score=27.37 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~a 168 (441)
...-+..|...+..+...+..++.........+.+.......++...+
T Consensus 50 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e 97 (123)
T PF02050_consen 50 YQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKE 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554444444444444444444444433
No 388
>PLN02939 transferase, transferring glycosyl groups
Probab=74.32 E-value=2e+02 Score=34.41 Aligned_cols=59 Identities=27% Similarity=0.222 Sum_probs=30.1
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHhhhh---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 42 PLKIELDQLKSKIRSLESHIDEKTQEL---KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 42 ~~~~el~~l~~~i~~Les~i~~~~~~i---~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
++-.|++-||.+---|...|..+..++ ++.++-+-.+|+.-.-++..+.+|++.+..-|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (977)
T PLN02939 223 SLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQ 284 (977)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456666666666555555555554443 33344444444444444445555555554444
No 389
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=74.26 E-value=98 Score=35.05 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
.++.+++.+|.++..+.+...++.+. -.++....+.+.+.++..|+++++.+
T Consensus 346 q~~~~~~~~l~~~~~~~~~~~~e~~~---~~~~~~~~~~~~~~~l~~le~~l~~~ 397 (656)
T PRK06975 346 RKVDRLDQELVQRQQANDAQTAELRV---KTEQAQASVHQLDSQFAQLDGKLADA 397 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665555555444422 12233334444444444444444333
No 390
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.98 E-value=1.4e+02 Score=33.77 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=13.6
Q ss_pred CchhHhHHHHHHHHHHHHhhHHHHhhh
Q 013531 41 SPLKIELDQLKSKIRSLESHIDEKTQE 67 (441)
Q Consensus 41 ~~~~~el~~l~~~i~~Les~i~~~~~~ 67 (441)
.++.+-..+++.....+..++-+..++
T Consensus 354 ~~~k~i~~t~~~~r~~~~ak~ld~sK~ 380 (758)
T COG4694 354 ENLKNIIETLRSKRLANQAKMLDKSKE 380 (758)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccchh
Confidence 334444455555555555555554443
No 391
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=73.91 E-value=96 Score=30.63 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013531 73 EVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (441)
Q Consensus 73 ~~l~~ke~~i~ek~~~I~~l~~ei~sLq~ 101 (441)
..-+.++..|......|.++-.++.+|-.
T Consensus 87 ~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 87 QRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34445566666666777777777777744
No 392
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=73.78 E-value=96 Score=35.35 Aligned_cols=7 Identities=0% Similarity=0.003 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 013531 369 VQASVQE 375 (441)
Q Consensus 369 ~Q~~v~~ 375 (441)
++..+.+
T Consensus 630 ~~~ll~~ 636 (726)
T PRK09841 630 MRQLLEW 636 (726)
T ss_pred HHHHHHH
Confidence 3444433
No 393
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.71 E-value=14 Score=34.76 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=5.9
Q ss_pred HHHHHHhhHHHHhhh
Q 013531 53 KIRSLESHIDEKTQE 67 (441)
Q Consensus 53 ~i~~Les~i~~~~~~ 67 (441)
++..++.++++...+
T Consensus 126 ~l~~~~~~~~~~~kq 140 (192)
T PF05529_consen 126 ELIKLEEKLEALKKQ 140 (192)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444443333
No 394
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=73.68 E-value=1.1e+02 Score=31.01 Aligned_cols=12 Identities=8% Similarity=0.138 Sum_probs=5.9
Q ss_pred hhhccCCchHHH
Q 013531 225 HWNAHGKPAMDV 236 (441)
Q Consensus 225 ~w~~hg~p~~~~ 236 (441)
.+-..|.|++..
T Consensus 223 ~~V~~G~~l~~I 234 (331)
T PRK03598 223 TMLNAGSTVFTL 234 (331)
T ss_pred CCcCCCCeEEEE
Confidence 333456665544
No 395
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=73.64 E-value=57 Score=27.85 Aligned_cols=21 Identities=5% Similarity=0.159 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhHHHHhhhhcc
Q 013531 50 LKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~ 70 (441)
+-.++..|+..+..+.+++..
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~ 24 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQK 24 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666555555
No 396
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=73.53 E-value=72 Score=28.97 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhh
Q 013531 86 SERIVSLQKELSSLQ 100 (441)
Q Consensus 86 ~~~I~~l~~ei~sLq 100 (441)
...+..+..++..|+
T Consensus 33 ~~~~~~l~~e~~~l~ 47 (136)
T PF04871_consen 33 EQENKRLEAEEKELK 47 (136)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 397
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=73.49 E-value=9.6 Score=39.60 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=13.9
Q ss_pred hhhHHHhhhccCChhHHH
Q 013531 196 SKELTEVHSAWLPPWLAV 213 (441)
Q Consensus 196 Ak~l~e~h~~wlppw~a~ 213 (441)
..--.+|-|.|-|||+.+
T Consensus 286 g~d~~~v~g~~~p~k~~~ 303 (361)
T KOG3634|consen 286 GLDPEEVTGRWKPPKVQI 303 (361)
T ss_pred CCChhhhcCCCCCceeeh
Confidence 334678999999999863
No 398
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=73.45 E-value=1.2e+02 Score=31.41 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 013531 73 EVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (441)
Q Consensus 73 ~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~ 103 (441)
..+....+.|.+-.+.|.+++++|.+|+...
T Consensus 74 ~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 74 ANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666665433
No 399
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=73.22 E-value=69 Score=34.53 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
......|-.+|++|+..++++.+|... -.-.-...+++.+...+..+.+.....+.-+....-..+
T Consensus 212 ~~~sd~Ll~kVdDLQD~VE~LRkDV~~--RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~Wk 277 (424)
T PF03915_consen 212 SEESDRLLTKVDDLQDLVEDLRKDVVQ--RGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWK 277 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 333444444555555555555544321 111114444555556666666666666555555555444
No 400
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=73.17 E-value=31 Score=30.17 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhhHHHH
Q 013531 47 LDQLKSKIRSLESHIDEK 64 (441)
Q Consensus 47 l~~l~~~i~~Les~i~~~ 64 (441)
+.+++.+|..|...++.+
T Consensus 8 ~~~l~~~i~~l~~~~~~l 25 (129)
T cd00584 8 LQVLQQEIEELQQELARL 25 (129)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 401
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=73.00 E-value=1.2e+02 Score=34.13 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=67.3
Q ss_pred cchhHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhchhhHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 69 KGKDEVVAQKEKAIQD-----KSERIVSLQKELSSLQKKETLNAAEQVD--KAHARADELEKQIDNLKKESEKQQKEKEA 141 (441)
Q Consensus 69 ~~k~~~l~~ke~~i~e-----k~~~I~~l~~ei~sLq~~~~~~~~~~~~--~a~~~~~eLe~eVe~Lkkeie~~ek~~ee 141 (441)
..+...+.+.|.++.+ .+..+..+-+-+..|-+..+.....+.. .|+.=+..++..-..|+....+++.++..
T Consensus 96 ~~~~~~l~~le~if~e~~~~gl~~~l~~ff~al~~ls~~P~~~a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~ 175 (627)
T PRK06665 96 KTKDKYLSQLEQVYNEPEDQSLRTRLDDFWDSWQDLSNYPEGLAERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEI 175 (627)
T ss_pred HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888765 3456666666677776555444443333 66666777777777777777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013531 142 LEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 142 LEark~eLEkkleELekklEeLe 164 (441)
.-.+.+.+-+++++|+.++...+
T Consensus 176 ~V~~iN~ll~qIa~LN~qI~~~~ 198 (627)
T PRK06665 176 TVEEINNILRNIADLNEQIVKSQ 198 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888888887654
No 402
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=72.89 E-value=2.5 Score=37.26 Aligned_cols=44 Identities=16% Similarity=0.347 Sum_probs=8.6
Q ss_pred HHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 55 RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (441)
Q Consensus 55 ~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~s 98 (441)
......+++.++.....-..+..-|..|-+...+|..|.+++..
T Consensus 25 n~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~ 68 (116)
T PF05064_consen 25 NKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQK 68 (116)
T ss_dssp ------------------------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444433
No 403
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=72.82 E-value=54 Score=36.50 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 013531 89 IVSLQKELSSL 99 (441)
Q Consensus 89 I~~l~~ei~sL 99 (441)
+.+..+.|..|
T Consensus 193 ~~~yk~~v~~i 203 (555)
T TIGR03545 193 LEEYKKRLEAI 203 (555)
T ss_pred HHHHHHHHHHH
Confidence 33334444444
No 404
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=72.63 E-value=21 Score=33.56 Aligned_cols=14 Identities=57% Similarity=0.793 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEK 134 (441)
Q Consensus 121 Le~eVe~Lkkeie~ 134 (441)
+++++++|++++++
T Consensus 159 ~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 159 LSEEIEKLKKELEK 172 (192)
T ss_pred hHHHHHHHHHHHHH
Confidence 33344444444444
No 405
>PHA02414 hypothetical protein
Probab=72.61 E-value=27 Score=30.38 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
..+|+..|.+|++.+..+.++..--+.+..-+=-++..|+..++.|.
T Consensus 31 n~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~ 77 (111)
T PHA02414 31 NKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALA 77 (111)
T ss_pred hHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777776655555556666666666666554
No 406
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.59 E-value=1.2e+02 Score=32.95 Aligned_cols=135 Identities=15% Similarity=0.127 Sum_probs=77.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVD---KAHARADELEKQIDNLKKESEKQQKEKEALEARA 146 (441)
Q Consensus 70 ~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~---~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark 146 (441)
++..++..++..++.++-...+|-+.|+-|. +..+++.+ +...++..|..++...++....++..+.-.+.++
T Consensus 294 easle~Enlqmr~qqleeentelRs~~arlk----sl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek 369 (502)
T KOG0982|consen 294 EASLEKENLQMRDQQLEEENTELRSLIARLK----SLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK 369 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555666677777777777777777774 33444433 3556677777777777777777777777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH--HHHHHHHHhhhhhhhhHHHhhhccCC
Q 013531 147 IEAEKKISDLSAKLEKLQKINDEQK--SKIRKTERALK--EEMMRAKFEATSRSKELTEVHSAWLP 208 (441)
Q Consensus 147 ~eLEkkleELekklEeLek~~aEQk--~qIeelEk~lk--eei~k~k~E~~~kAk~l~e~h~~wlp 208 (441)
...+..++++.+.++.++-.+-... ..+....+.+. .+..+++.+...=..+=.+.||.-|.
T Consensus 370 eatqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngtilT 435 (502)
T KOG0982|consen 370 EATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTILT 435 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhhhh
Confidence 6677777777777777764444333 11111111111 33444444443333444555665554
No 407
>PF14282 FlxA: FlxA-like protein
Probab=72.53 E-value=28 Score=30.15 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 013531 79 EKAIQDKSERIVSLQKELSSLQK 101 (441)
Q Consensus 79 e~~i~ek~~~I~~l~~ei~sLq~ 101 (441)
+..|..+.+.|..|+.+|..|..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 67777777777777777777765
No 408
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=72.50 E-value=29 Score=27.81 Aligned_cols=42 Identities=24% Similarity=0.514 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 123 ~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
+.+..++..++..+.++..+|......+..+..++..++++.
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443
No 409
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=72.48 E-value=1.3e+02 Score=34.40 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=68.9
Q ss_pred chhHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhchhhHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 70 GKDEVVAQKEKAIQD----KSERIVSLQKELSSLQKKETLNAAEQVD--KAHARADELEKQIDNLKKESEKQQKEKEALE 143 (441)
Q Consensus 70 ~k~~~l~~ke~~i~e----k~~~I~~l~~ei~sLq~~~~~~~~~~~~--~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLE 143 (441)
.+.+.+.+.|..+.+ ++..|..+-+-+..|-+..+.....+.. .|+.=+..++..-..|......++.++...-
T Consensus 86 ~~~~~l~~ld~ll~~~~~gls~~L~~Ff~alq~la~~P~s~aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V 165 (676)
T PRK05683 86 AYLGQISQLDKLLSDSTTGISPALQRFFTALQTAAANPTDTAARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMT 165 (676)
T ss_pred HHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667766654 4566777777777776666555554443 7777778888877888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013531 144 ARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 144 ark~eLEkkleELekklEeLe 164 (441)
.+.+.+-+++.+|+.++...+
T Consensus 166 ~~IN~l~~qIA~LN~qI~~~~ 186 (676)
T PRK05683 166 DQVNNLTTSIASYNKQIAQAS 186 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888887643
No 410
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=72.46 E-value=79 Score=33.98 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~ 97 (441)
++..|...+.--+.+..+++...+||.+.|..|...+..|.++.+-+.
T Consensus 276 f~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLK 323 (421)
T KOG2685|consen 276 FKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLK 323 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHH
Confidence 555666666666777777888888888888777777777766655443
No 411
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.39 E-value=24 Score=36.90 Aligned_cols=56 Identities=27% Similarity=0.289 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 80 KAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 80 ~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~e 136 (441)
++-...+..+..++.++++| +..+-.-.++..+-.+-.+.|+-++.+|++.++=++
T Consensus 218 klR~r~eeeme~~~aeq~sl-kRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQESL-KRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33344466666677777777 333333333333333333333333333333333333
No 412
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=72.23 E-value=29 Score=38.74 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 138 EKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 138 ~~eeLEark~eLEkkleELekklEeLe 164 (441)
++.++|++++++...+++++.++++++
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk 120 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELK 120 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 413
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=72.21 E-value=40 Score=29.22 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQKEKEALEARAIEA--EKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~eeLEark~eL--EkkleELekklEeLek~~aEQk~qIeelE 178 (441)
++.|...+.....++..+|.+...+ ...+.+|+..+.+++........+++.+.
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333333344444444433333 22333333344444433333333333333
No 414
>PRK12705 hypothetical protein; Provisional
Probab=72.05 E-value=1.6e+02 Score=32.49 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=6.1
Q ss_pred hhhcchhHHHHHHHHH
Q 013531 66 QELKGKDEVVAQKEKA 81 (441)
Q Consensus 66 ~~i~~k~~~l~~ke~~ 81 (441)
++++.+..++...|+.
T Consensus 70 ~e~~~~~~~~~~~e~r 85 (508)
T PRK12705 70 QEARREREELQREEER 85 (508)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 415
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=71.98 E-value=39 Score=31.33 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKEALEA 144 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~eeLEa 144 (441)
.+++.+++.+.+.|+.++...++.+..|..
T Consensus 19 K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 19 KAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555666666666666666655554
No 416
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.56 E-value=35 Score=37.32 Aligned_cols=107 Identities=24% Similarity=0.294 Sum_probs=52.9
Q ss_pred HHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEA 141 (441)
Q Consensus 62 ~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~ee 141 (441)
.+|.+.++-.|+++++.-..|.... ++|.-|| +.-.+.--.+..+.-|..+|..++-++--.++-++++--.
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~-------e~v~eLq-k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~ 408 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIG-------ERVTELQ-KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYA 408 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 4555556666777777765554444 4444444 3333333444455555666666655554444444444334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (441)
Q Consensus 142 LEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~ 180 (441)
|.....+|..+++.+...++.= .+.+.+++.+-..
T Consensus 409 L~~~EE~Lr~Kldtll~~ln~P----nq~k~Rl~~L~e~ 443 (508)
T KOG3091|consen 409 LTPDEEELRAKLDTLLAQLNAP----NQLKARLDELYEI 443 (508)
T ss_pred CCccHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHH
Confidence 4433334444444433333222 4556666655543
No 417
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=71.43 E-value=1.7e+02 Score=32.27 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=13.1
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhh
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQ 66 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~ 66 (441)
..-+.....+|.+|..+|.++..
T Consensus 250 ~~~i~~a~~~i~~L~~~l~~l~~ 272 (582)
T PF09731_consen 250 NSLIAHAKERIDALQKELAELKE 272 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666665533
No 418
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=70.83 E-value=1.1e+02 Score=33.17 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=70.2
Q ss_pred cchhHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhhchhhHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 69 KGKDEVVAQKEKAIQD------KSERIVSLQKELSSLQKKETLNAAEQVD--KAHARADELEKQIDNLKKESEKQQKEKE 140 (441)
Q Consensus 69 ~~k~~~l~~ke~~i~e------k~~~I~~l~~ei~sLq~~~~~~~~~~~~--~a~~~~~eLe~eVe~Lkkeie~~ek~~e 140 (441)
..+...+.+.|.++.+ .+..+..+-+-+..|-+..++....+.. .|+.=+..++.....|.....+++.++.
T Consensus 78 ~~~~~~l~~le~~~~e~~~~~gl~~~l~~ff~a~~~la~~P~~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~ 157 (483)
T PRK07521 78 DTLADGLERLASTVGDNDYEGSPSARLSDFQAALQTAASSPDNTTLAQAAVDAAQDLANSLNDASDAVQSARADADAEIA 157 (483)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778888875 4567778888888886655554444333 6676677777777777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 141 ALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 141 eLEark~eLEkkleELekklEeLe 164 (441)
..-.+.+.+-+++.+|+.++...+
T Consensus 158 ~~V~~iN~l~~~Ia~LN~~I~~~~ 181 (483)
T PRK07521 158 DSVDTLNDLLAQFEDANNAVVSGT 181 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888888888886654
No 419
>PRK14011 prefoldin subunit alpha; Provisional
Probab=70.60 E-value=88 Score=28.79 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 013531 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ 93 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~ 93 (441)
|+.++-..+.++..+|+.++++|.. +...+.+....|.+|+
T Consensus 4 elq~~~~~l~~~~~qie~L~~si~~-------L~~a~~e~~~~ie~L~ 44 (144)
T PRK14011 4 ELQNQFMALEVYNQQVQKLQEELSS-------IDMMKMELLKSIESME 44 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4555555555666666665555554 4444444444544444
No 420
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=70.52 E-value=1.9e+02 Score=32.48 Aligned_cols=67 Identities=19% Similarity=0.326 Sum_probs=34.6
Q ss_pred HHHHHHHHhhHHHHhhhhc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhhHHhhHHHHHHHH
Q 013531 51 KSKIRSLESHIDEKTQELK---GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAHARA 118 (441)
Q Consensus 51 ~~~i~~Les~i~~~~~~i~---~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~-~~~~~~~~~~a~~~~ 118 (441)
..+++-|+-+++|++. ++ +-+++|.+.-+.+...++.....++-.+.|..++ +......++.|..++
T Consensus 184 ~~~~d~L~fq~~Ele~-~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l 254 (557)
T COG0497 184 AQRADLLQFQLEELEE-LNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEAL 254 (557)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 3344445555555532 22 2244555555666666777777777777775433 122333444444443
No 421
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=70.35 E-value=98 Score=31.80 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~e 136 (441)
.|..++|..|+.-++...
T Consensus 120 KEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 120 KEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 422
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=70.34 E-value=44 Score=33.80 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhhHHH
Q 013531 49 QLKSKIRSLESHIDE 63 (441)
Q Consensus 49 ~l~~~i~~Les~i~~ 63 (441)
.++.+..+.+..|..
T Consensus 145 ~~~~~~~ekd~~i~~ 159 (264)
T PF07246_consen 145 ELKKEAEEKDQLIKE 159 (264)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444443333443
No 423
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=70.23 E-value=12 Score=33.94 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013531 78 KEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sL 99 (441)
.|..+.+++..+..+.+||.+|
T Consensus 92 yE~~~~kLe~e~~~Kdsei~~L 113 (131)
T PF04859_consen 92 YEIVVKKLEAELRAKDSEIDRL 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 424
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=70.20 E-value=1.4e+02 Score=31.05 Aligned_cols=85 Identities=16% Similarity=0.238 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhh--HHhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 74 VVAQKEKAIQDKSERIVSLQKELSSLQKKETLN--AAEQVD---------KAHARADELEKQIDNLKKESEKQQKEKEAL 142 (441)
Q Consensus 74 ~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~--~~~~~~---------~a~~~~~eLe~eVe~Lkkeie~~ek~~eeL 142 (441)
..+.+...+.++-+++.+++.+|-.|....... -..+++ ..-.++..++.++..|+.++..+-.+++++
T Consensus 80 ~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl 159 (319)
T PF09789_consen 80 QNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL 159 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666677777777766665432221 111111 222334444555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 013531 143 EARAIEAEKKISDLSA 158 (441)
Q Consensus 143 Eark~eLEkkleELek 158 (441)
..++..-..+...|+.
T Consensus 160 ~~ERD~yk~K~~RLN~ 175 (319)
T PF09789_consen 160 VTERDAYKCKAHRLNH 175 (319)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555554444444443
No 425
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=70.10 E-value=58 Score=32.50 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 013531 167 NDEQKSKIRKTER 179 (441)
Q Consensus 167 ~aEQk~qIeelEk 179 (441)
....+.+.++++.
T Consensus 193 v~~L~~r~~ELe~ 205 (290)
T COG4026 193 VYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHhcc
Confidence 3333333333333
No 426
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=70.06 E-value=2.3e+02 Score=33.27 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 013531 112 DKAHARADELEKQIDN 127 (441)
Q Consensus 112 ~~a~~~~~eLe~eVe~ 127 (441)
..|.....++-+.+++
T Consensus 899 d~~~~~~e~~~~~l~s 914 (1259)
T KOG0163|consen 899 DVAVKNYEKLVKRLDS 914 (1259)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3444444455444443
No 427
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=70.04 E-value=43 Score=29.20 Aligned_cols=23 Identities=13% Similarity=0.398 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhHHHHhhhhcc
Q 013531 48 DQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
.+|...+.+|+..|+.+.+.+..
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~ 24 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAA 24 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777776666665
No 428
>PRK15396 murein lipoprotein; Provisional
Probab=69.81 E-value=31 Score=28.75 Aligned_cols=8 Identities=38% Similarity=0.426 Sum_probs=3.3
Q ss_pred chhhhHHH
Q 013531 3 ASKLVIFS 10 (441)
Q Consensus 3 ~~~~~~~~ 10 (441)
..+|++.+
T Consensus 3 ~~kl~l~a 10 (78)
T PRK15396 3 RTKLVLGA 10 (78)
T ss_pred hhHHHHHH
Confidence 33444443
No 429
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=69.66 E-value=1.6e+02 Score=34.43 Aligned_cols=126 Identities=20% Similarity=0.287 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHH-HHHHHHHHH
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVD-KAHARADEL 121 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~-~a~~~~~eL 121 (441)
++..|+++.++-..-+.++....+++..-.+.+.++...-.-|-..+.++.+|+.-+- +.++.++. .|..|.++|
T Consensus 989 Lr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~G----V~AD~gAeeRA~~RRDEL 1064 (1480)
T COG3096 989 LRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIG----VRADSGAEERARIRRDEL 1064 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhC----CCcCcchHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKS 172 (441)
Q Consensus 122 e~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~ 172 (441)
..++..-+.-....++.+.-.|++...+.+++..++....++......-+.
T Consensus 1065 h~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~AK~ 1115 (1480)
T COG3096 1065 HAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKA 1115 (1480)
T ss_pred HHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc
No 430
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=69.54 E-value=31 Score=28.57 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=4.6
Q ss_pred HHHHHHHHHHhh
Q 013531 89 IVSLQKELSSLQ 100 (441)
Q Consensus 89 I~~l~~ei~sLq 100 (441)
|..+.+++.+||
T Consensus 13 Ik~vd~KVdaLq 24 (75)
T PF05531_consen 13 IKAVDDKVDALQ 24 (75)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 431
>PRK15396 murein lipoprotein; Provisional
Probab=69.51 E-value=18 Score=30.05 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHhhHHHHhh
Q 013531 46 ELDQLKSKIRSLESHIDEKTQ 66 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~ 66 (441)
++++|..+++.|.++++.+.+
T Consensus 26 kvd~LssqV~~L~~kvdql~~ 46 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSN 46 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655555433
No 432
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=69.33 E-value=1.9e+02 Score=31.99 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEAL 142 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeL 142 (441)
+...|++=++.+.+....-+.++..|
T Consensus 141 q~~~LekAl~~~~~i~~~E~~~l~~L 166 (508)
T PF00901_consen 141 QIEILEKALKSYGKIVKEENKQLDRL 166 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 433
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=69.29 E-value=44 Score=28.97 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNL--KKESEKQQKEKEALEARAIE 148 (441)
Q Consensus 117 ~~~eLe~eVe~L--kkeie~~ek~~eeLEark~e 148 (441)
|+..+|.+++.| ..++.+++-++.+++.+...
T Consensus 50 Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 50 RLQALETKLEHLPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHH
Confidence 333333333333 33333333333333333333
No 434
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=69.28 E-value=1.9e+02 Score=32.81 Aligned_cols=115 Identities=15% Similarity=0.174 Sum_probs=77.5
Q ss_pred hcchhHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhchhhHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 68 LKGKDEVVAQKEKAIQD----KSERIVSLQKELSSLQKKETLNAAEQVD--KAHARADELEKQIDNLKKESEKQQKEKEA 141 (441)
Q Consensus 68 i~~k~~~l~~ke~~i~e----k~~~I~~l~~ei~sLq~~~~~~~~~~~~--~a~~~~~eLe~eVe~Lkkeie~~ek~~ee 141 (441)
...+...+.+.|+++.+ .+..+.++-+-+..|-+..+.....+.. +|++=+..++..-..|.......+.++..
T Consensus 85 ~~~~~~~l~~le~l~~~~~~gls~~L~~Ff~alq~la~~P~~~~~Rq~vl~~a~~La~~fn~~~~~L~~~~~~~n~~I~~ 164 (651)
T PRK06945 85 LSTYYSQISQLNNYLADPTAGLSPAITSFFTGLQNVANNPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNTQLTS 164 (651)
T ss_pred HHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777774 3455666666677776555444444433 77777777777777787778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 013531 142 LEARAIEAEKKISDLSAKLEKLQ--------KINDEQKSKIRKTERALK 182 (441)
Q Consensus 142 LEark~eLEkkleELekklEeLe--------k~~aEQk~qIeelEk~lk 182 (441)
.-.+.+.+-+++.+|+.++...+ ...+++...++++-+.+.
T Consensus 165 ~V~~IN~l~~qIA~LN~~I~~~~~~~g~~~ndLlDqRD~ll~eLS~~v~ 213 (651)
T PRK06945 165 SVTQINSYTKQIAQLNDQIAKAESSQGQPPNDLLDQRDQLVSELSKLVG 213 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHhhcC
Confidence 88888888888888888887652 344455555555554443
No 435
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=69.03 E-value=1.7e+02 Score=31.30 Aligned_cols=53 Identities=28% Similarity=0.342 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNL-KKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~L-kkeie~~ek~~eeLEark~eLEkkleELekklEeLek 165 (441)
..++++.+++.++..- +..+.....+...++.+.+.++++++.+++++..+..
T Consensus 317 ~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~ 370 (458)
T COG3206 317 ALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPK 370 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 4445555555554332 5555555555555666666666666666655554443
No 436
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=68.86 E-value=1.7e+02 Score=31.36 Aligned_cols=35 Identities=14% Similarity=0.342 Sum_probs=23.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEAL 142 (441)
Q Consensus 108 ~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeL 142 (441)
+...+.+..+.+.+++.+.++...+..++.++..+
T Consensus 215 e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~ 249 (464)
T KOG4637|consen 215 EKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKAL 249 (464)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55556666677777777777777776666665553
No 437
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=68.80 E-value=1.6e+02 Score=30.97 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=8.9
Q ss_pred CCchhHhHHHHHHHHHHH
Q 013531 40 SSPLKIELDQLKSKIRSL 57 (441)
Q Consensus 40 ~~~~~~el~~l~~~i~~L 57 (441)
...+-.-++.|..+|.-|
T Consensus 241 ~~~l~~~l~~L~~~lslL 258 (388)
T PF04912_consen 241 SSPLLPALNELERQLSLL 258 (388)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 334444455555555555
No 438
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=68.65 E-value=1e+02 Score=28.86 Aligned_cols=121 Identities=13% Similarity=0.231 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHH
Q 013531 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN 127 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~ 127 (441)
+.|+..|..++....+..-++++....+..+...+.--...|..|-..-.++.-.....-..-.+-+..+...++.++..
T Consensus 18 ~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~a~ 97 (158)
T PF09486_consen 18 RRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAELAA 97 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666677777766444443333333344455666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (441)
Q Consensus 128 Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~a 168 (441)
|+..++.....+.........+..+++-....++.|....+
T Consensus 98 l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~e 138 (158)
T PF09486_consen 98 LRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAE 138 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777767766666654433
No 439
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=68.64 E-value=75 Score=28.87 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHH
Q 013531 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKA 81 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~ 81 (441)
.|.=.+.+.|.+.+..+..+|+.+..++..+++.
T Consensus 19 Qq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA 52 (131)
T KOG1760|consen 19 QQNINEFSRLNSRKDDLKADIKEAKTEIENLEDA 52 (131)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888888888877777766666555543
No 440
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=68.33 E-value=33 Score=27.03 Aligned_cols=28 Identities=43% Similarity=0.548 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIE 148 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~e 148 (441)
+++++..|.++++.++.++..++.+.+.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566666666666666666666666553
No 441
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=67.96 E-value=64 Score=26.12 Aligned_cols=17 Identities=12% Similarity=0.350 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013531 124 QIDNLKKESEKQQKEKE 140 (441)
Q Consensus 124 eVe~Lkkeie~~ek~~e 140 (441)
++..|+..++.+..++.
T Consensus 6 ~~~~Lr~rLd~~~rk~~ 22 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNS 22 (69)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 442
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.54 E-value=25 Score=39.77 Aligned_cols=75 Identities=23% Similarity=0.289 Sum_probs=41.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-HHHHHHHHHHHHHHHHHHHHHH
Q 013531 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA--------------E-KKISDLSAKLEKLQKINDEQKS 172 (441)
Q Consensus 108 ~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eL--------------E-kkleELekklEeLek~~aEQk~ 172 (441)
.++..+-.-.++.|.++-++=.+++.++-.+++.+-...+.- - .+++++...+.+|++.+...-.
T Consensus 102 ke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rle 181 (660)
T KOG4302|consen 102 KEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLE 181 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555554444444444444444444444332 1 3567777777777777776666
Q ss_pred HHHHHHHHHH
Q 013531 173 KIRKTERALK 182 (441)
Q Consensus 173 qIeelEk~lk 182 (441)
.+.++...+.
T Consensus 182 kv~~~~~~I~ 191 (660)
T KOG4302|consen 182 KVLELKEEIK 191 (660)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 443
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=67.38 E-value=62 Score=25.81 Aligned_cols=45 Identities=13% Similarity=0.298 Sum_probs=23.9
Q ss_pred HHHHhhHHHHhhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 55 RSLESHIDEKTQE-LKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 55 ~~Les~i~~~~~~-i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
+.+.++|..+... -.+|...|...+..|.|....|..|+-|+.++
T Consensus 6 ~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 6 AEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444444311 13555556666666666666666666666555
No 444
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=67.21 E-value=1.4e+02 Score=29.96 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEK 134 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~ 134 (441)
.-..+-.||+.-++.|++..+.
T Consensus 138 ~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 138 FILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445555555555544444
No 445
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=67.17 E-value=2.2e+02 Score=32.21 Aligned_cols=94 Identities=12% Similarity=0.130 Sum_probs=64.2
Q ss_pred chhHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhchhhHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 70 GKDEVVAQKEKAIQDK-----SERIVSLQKELSSLQKKETLNAAEQVD--KAHARADELEKQIDNLKKESEKQQKEKEAL 142 (441)
Q Consensus 70 ~k~~~l~~ke~~i~ek-----~~~I~~l~~ei~sLq~~~~~~~~~~~~--~a~~~~~eLe~eVe~Lkkeie~~ek~~eeL 142 (441)
.+...+.+.|..+.+- +..|..+-+-+..|-+..+.....+.. .|+.-+..++..-..|.......+.++...
T Consensus 88 ~~~~~l~~ld~l~~~~~~~gls~~L~~Ff~alq~la~~P~~~aaRq~vl~~A~~La~~fn~~~~~L~~~~~~vn~qi~~~ 167 (626)
T PRK08871 88 DTEANLDMLSSMLSSVASKKIPENLNEWFDAVKTLADSPNDLGARKVVLEKAKLISQTLNDFHETVRQQKDVTNKKLDLG 167 (626)
T ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777762 455666666666665555555444444 666667777777777777777777888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013531 143 EARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 143 Eark~eLEkkleELekklEeL 163 (441)
-.+.+.+-+++.+|+.++...
T Consensus 168 V~~IN~l~~qIA~LN~qI~~~ 188 (626)
T PRK08871 168 VERINQIALEIRDIHRLMMRT 188 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888888888654
No 446
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=67.13 E-value=1.2e+02 Score=28.95 Aligned_cols=32 Identities=31% Similarity=0.543 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEark~eLE 150 (441)
.+++.++..|+++++.+...+..+..+...++
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333333
No 447
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=67.07 E-value=98 Score=27.98 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCccCccCCCCchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 013531 9 FSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSER 88 (441)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~ 88 (441)
..|++++++++..++.++ +.....++++|.++..+|+.+=+++-.+.+..-+.+..-=....++-..
T Consensus 4 ~ll~~~lllss~sfaA~~-------------~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~ 70 (126)
T PF09403_consen 4 ILLLGMLLLSSISFAATA-------------TASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAE 70 (126)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccc-------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHhhhhc--hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 89 IVSLQKELSSLQKKE--TLNAAEQVDKAHARADELEKQIDNLKKESEKQQK 137 (441)
Q Consensus 89 I~~l~~ei~sLq~~~--~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek 137 (441)
|.+.-..|...-+-. .-.=.+-+.+-..-.++|++++.+.++.|+..+.
T Consensus 71 i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 71 IEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 448
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=66.59 E-value=2.3e+02 Score=31.99 Aligned_cols=111 Identities=8% Similarity=0.083 Sum_probs=72.7
Q ss_pred cchhHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhchhhHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 69 KGKDEVVAQKEKAIQD----KSERIVSLQKELSSLQKKETLNAAEQVD--KAHARADELEKQIDNLKKESEKQQKEKEAL 142 (441)
Q Consensus 69 ~~k~~~l~~ke~~i~e----k~~~I~~l~~ei~sLq~~~~~~~~~~~~--~a~~~~~eLe~eVe~Lkkeie~~ek~~eeL 142 (441)
..+.+.+.+.|.++.+ .+..|..+-+-+..|-+..+.....+.. .|+.-+..++..-..|......++.++...
T Consensus 85 ~~~~~~l~~le~ll~~~~~gls~~l~~ff~alq~la~~P~~~~~R~~vl~~A~~La~~f~~~~~~L~~~~~~~n~~i~~~ 164 (624)
T PRK12714 85 QQLSSLSNRVDALYSNTATNVAGLWSNFFDSTSALSSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSS 164 (624)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777774 3455555666666665555444444443 677667777777777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 013531 143 EARAIEAEKKISDLSAKLEKL-----QKINDEQKSKIRKTER 179 (441)
Q Consensus 143 Eark~eLEkkleELekklEeL-----ek~~aEQk~qIeelEk 179 (441)
-.+.+.+-+++.+|+.++... ++..+++...++++-+
T Consensus 165 V~~IN~l~~~IA~LN~~I~~~~~~~~ndLlDqRD~ll~eLS~ 206 (624)
T PRK12714 165 VDEVNRLTQQIAKINGTIGSSAQNAAPDLLDQRDALVSKLVG 206 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHh
Confidence 888888888888888888654 2344444444444433
No 449
>PRK14011 prefoldin subunit alpha; Provisional
Probab=66.57 E-value=1.1e+02 Score=28.24 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 75 VAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 75 l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
|.++-..++.....|..|++.|++|
T Consensus 5 lq~~~~~l~~~~~qie~L~~si~~L 29 (144)
T PRK14011 5 LQNQFMALEVYNQQVQKLQEELSSI 29 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444
No 450
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=66.50 E-value=32 Score=35.67 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 013531 83 QDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 83 ~ek~~~I~~l~~ei~sLq 100 (441)
.|+..++..+-.++.+|.
T Consensus 2 ~el~~~~~~~~~~~r~l~ 19 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLL 19 (378)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455566666666666665
No 451
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.48 E-value=1.4e+02 Score=35.10 Aligned_cols=90 Identities=23% Similarity=0.206 Sum_probs=52.0
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHH---hhHHHHHHHHH
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA---EQVDKAHARAD 119 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~---~~~~~a~~~~~ 119 (441)
+..|+..+..+|+..++.+....++..+....-.+.|+.+.+++..+.++++|..-|.+++..-.- ++..--..++.
T Consensus 472 ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk 551 (913)
T KOG0244|consen 472 LSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLK 551 (913)
T ss_pred hhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHH
Confidence 455666677777777777776666666666666666777777766666677666666655433222 22222223344
Q ss_pred HHHHHHHHHHHHH
Q 013531 120 ELEKQIDNLKKES 132 (441)
Q Consensus 120 eLe~eVe~Lkkei 132 (441)
.|+.++..|++-.
T Consensus 552 ~le~q~s~lkk~l 564 (913)
T KOG0244|consen 552 SLETQISLLKKKL 564 (913)
T ss_pred HHHHHHHHHHHhh
Confidence 5555555554433
No 452
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.18 E-value=1.9e+02 Score=30.98 Aligned_cols=21 Identities=14% Similarity=0.321 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013531 158 AKLEKLQKINDEQKSKIRKTE 178 (441)
Q Consensus 158 kklEeLek~~aEQk~qIeelE 178 (441)
.+..++++..+.-+.+|..+|
T Consensus 298 eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 298 ERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666
No 453
>PLN02320 seryl-tRNA synthetase
Probab=66.03 E-value=1e+02 Score=34.05 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCc---hhccchH
Q 013531 362 ATTYHHQVQASVQEMLKKHELTS---PLATKEL 391 (441)
Q Consensus 362 a~~~H~q~Q~~v~~~l~~~e~~~---~~at~el 391 (441)
+...|..+-..+.+.+..-+|.- -++|.+|
T Consensus 357 s~~e~e~ll~~~e~i~~~LgLpyrvv~l~tgDL 389 (502)
T PLN02320 357 SESFHEELIQIEEDLFTSLGLHFKTLDMATADL 389 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEEecCCcc
Confidence 44445556666666666666642 3355555
No 454
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=65.85 E-value=2e+02 Score=31.64 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQ 135 (441)
Q Consensus 56 ~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ 135 (441)
+|+..|..|...=+...-.|..+.-.=.=++++|.+||-.|.--|.=. +-|.+|+..++++
T Consensus 314 aLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfv-------------------DiinkLk~niEeL 374 (527)
T PF15066_consen 314 ALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFV-------------------DIINKLKENIEEL 374 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHH-------------------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Q 013531 136 QKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK---EEMMRAKFE 191 (441)
Q Consensus 136 ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk---eei~k~k~E 191 (441)
..++-.+--+++++++.+..|..-+...++...+-+..-+-+.-.++ .....++.+
T Consensus 375 IedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 375 IEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred HHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHH
No 455
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=65.69 E-value=1.7e+02 Score=30.27 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
++..++.|+....-++++|..-...+.+++..+...-..+.++.--+.++|
T Consensus 135 mn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~Q 185 (305)
T PF14915_consen 135 MNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQ 185 (305)
T ss_pred hcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554444444444444433333333333333443
No 456
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=65.61 E-value=43 Score=31.77 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013531 128 LKKESEKQQKEKEALEARAIEAE 150 (441)
Q Consensus 128 Lkkeie~~ek~~eeLEark~eLE 150 (441)
.+.+++++..++..||++...+|
T Consensus 123 hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 123 HRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666665555543
No 457
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=65.58 E-value=3.1e+02 Score=33.24 Aligned_cols=73 Identities=22% Similarity=0.321 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Q 013531 78 KEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQK--------EKEALEARAIEA 149 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek--------~~eeLEark~eL 149 (441)
-++.-..-+..|.+....|+.|. +...+.-.++.|+-+..+-|..+|.-|+++..++-. ++++||.+...+
T Consensus 1094 ~eKvr~rYe~LI~~iTKrIt~LE-k~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~ 1172 (1439)
T PF12252_consen 1094 AEKVRVRYETLITDITKRITDLE-KAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVI 1172 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHh
Confidence 34444455677888888888885 556667788999999999999999999988777653 455555555554
Q ss_pred HH
Q 013531 150 EK 151 (441)
Q Consensus 150 Ek 151 (441)
..
T Consensus 1173 ~~ 1174 (1439)
T PF12252_consen 1173 HT 1174 (1439)
T ss_pred hh
Confidence 44
No 458
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=65.52 E-value=49 Score=35.35 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=13.9
Q ss_pred cCCchHHHHHHHHHHHHH-H--hcccccchHHH
Q 013531 229 HGKPAMDVAIQKALEKKA-Q--AGKWVQPHVET 258 (441)
Q Consensus 229 hg~p~~~~~~~ka~~~~~-~--~~~w~~P~l~~ 258 (441)
+|......+.+-+.+... . .....+|.|..
T Consensus 168 ~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~ 200 (425)
T PRK05431 168 DGARLERALIQFMLDLHTEEHGYTEVIPPYLVN 200 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEecccccc
Confidence 444444444444434333 2 23456666544
No 459
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=65.48 E-value=1.6e+02 Score=29.96 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 79 EKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSA 158 (441)
Q Consensus 79 e~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELek 158 (441)
++.|.+-+.++.-|-.+|..++..-+ +.-++.-..-..+...|+.|...+...+.+..++..|+.+.- -..++..|+.
T Consensus 95 dddl~DIsDklgvLl~e~ge~e~~~a-~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P-~s~kl~~Leq 172 (271)
T PF13805_consen 95 DDDLSDISDKLGVLLYEIGELEDQYA-DRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDP-QSPKLVVLEQ 172 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TTTTHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCC-CChHHHHHHH
Confidence 67788888888888888888874432 223333333334555555555555555555555555543211 1223444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013531 159 KLEKLQKINDEQKSKIRKT 177 (441)
Q Consensus 159 klEeLek~~aEQk~qIeel 177 (441)
++-.++....--++++...
T Consensus 173 ELvraEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 173 ELVRAEAENLVAEAQLSNI 191 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHh
Confidence 4444444333333334333
No 460
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=65.16 E-value=1.4e+02 Score=28.99 Aligned_cols=45 Identities=7% Similarity=0.090 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Q 013531 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSL 92 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l 92 (441)
..-+..|..|+.++..+.+.+..-...=+.+-..+.+....+..|
T Consensus 15 ~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L 59 (224)
T cd07623 15 EEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAML 59 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777666666655553333333444444444444444
No 461
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=64.60 E-value=42 Score=28.44 Aligned_cols=46 Identities=13% Similarity=0.347 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEe 162 (441)
++++|..+|+.|...++++..+...+.+.......+-+..+.+++.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5555566666666666666666655555555554444555555543
No 462
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=64.42 E-value=1.4e+02 Score=32.49 Aligned_cols=14 Identities=29% Similarity=0.658 Sum_probs=9.3
Q ss_pred hhhHHHhhhccCCh
Q 013531 196 SKELTEVHSAWLPP 209 (441)
Q Consensus 196 Ak~l~e~h~~wlpp 209 (441)
|.+=.|.+..|-||
T Consensus 321 AEkele~nS~wsaP 334 (575)
T KOG4403|consen 321 AEKELEANSSWSAP 334 (575)
T ss_pred HHHHHHhccCCCCc
Confidence 33344668789888
No 463
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=64.42 E-value=65 Score=26.87 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=36.8
Q ss_pred HHHhhcCcchHhHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 013531 328 QVATVAKPHVDNVRVALKPYTKKVVRAYGKFLKSATTYHHQVQASVQEMLKKHELTS 384 (441)
Q Consensus 328 qa~~~skP~vdkv~~~~~Py~e~v~~~~k~~~~~a~~~H~q~Q~~v~~~l~~~e~~~ 384 (441)
.+...+...++.++..+.-.++.++..+..+...+..--+++-..+.++.+.||+++
T Consensus 20 ~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~s 76 (94)
T PF05957_consen 20 SAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQS 76 (94)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHH
Confidence 333344444455555555566666666666666666666777777788899999876
No 464
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=64.22 E-value=1.7e+02 Score=29.83 Aligned_cols=96 Identities=17% Similarity=0.239 Sum_probs=61.3
Q ss_pred cchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhhchhhHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 69 KGKDEVVAQKEKAIQDKS-----ERIVSLQKELSSLQKKETLNAAEQV--DKAHARADELEKQIDNLKKESEKQQKEKEA 141 (441)
Q Consensus 69 ~~k~~~l~~ke~~i~ek~-----~~I~~l~~ei~sLq~~~~~~~~~~~--~~a~~~~~eLe~eVe~Lkkeie~~ek~~ee 141 (441)
..+...+.+.|.++.+.+ ..+..+-+-+..|-+..+.....+. ..|+.=+..++..-..|.....+.+.++..
T Consensus 84 ~~~~~~l~~le~~~~~~~~~gl~~~l~~ff~a~~~ls~~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~ 163 (322)
T TIGR02492 84 DSRASALSQIENLFNDLDESGLSTYLNNFFNALQELAKNPDSEALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKS 163 (322)
T ss_pred HHHHHHHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777787777643 5566677777777655444433322 266666666666666666666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013531 142 LEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 142 LEark~eLEkkleELekklEeLe 164 (441)
.-.+.+.+-.++.+++.++...+
T Consensus 164 ~V~~iN~ll~~Ia~lN~~I~~~~ 186 (322)
T TIGR02492 164 AVTEINSLLKQIASLNKEIQQVE 186 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777777775543
No 465
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.20 E-value=2.2e+02 Score=30.97 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHhhHHHHhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh--hchhhHHhhHHHHHHHHHHHHHHHHH-HHH
Q 013531 55 RSLESHIDEKTQELKGKDEVVAQK-EKAIQDKSERIVSLQKELSSLQK--KETLNAAEQVDKAHARADELEKQIDN-LKK 130 (441)
Q Consensus 55 ~~Les~i~~~~~~i~~k~~~l~~k-e~~i~ek~~~I~~l~~ei~sLq~--~~~~~~~~~~~~a~~~~~eLe~eVe~-Lkk 130 (441)
.+.+..+..++.++...+.+++.+ ++.|...+ ..++.+|.++.. .-....++...--+..+.++..+++. |+.
T Consensus 60 ~~~kkel~~~~~q~~~~k~~~~~~~~eqi~~~~---~~~q~e~~~~~~~~~~N~e~dke~~~le~~L~~~~~e~~~~lq~ 136 (438)
T COG4487 60 SAKKKELSQLEEQLINQKKEQKNLFNEQIKQFE---LALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQN 136 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhhhhHHHhhhcc
Q 013531 131 ESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK----EEMMRAKFEATSRSKELTEVHSAW 206 (441)
Q Consensus 131 eie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk----eei~k~k~E~~~kAk~l~e~h~~w 206 (441)
.++.++.+.+..+......-.-...++.. |+-.......++.+...+++ ++.+......-+++++++|
T Consensus 137 ~~e~~~kkre~~k~~~~l~~~~ekK~e~s---Le~eR~k~~~ql~~~~~~~e~~e~~e~~~s~~~~~k~~k~~ae----- 208 (438)
T COG4487 137 TAEIIEKKRENNKNEERLKFENEKKLEES---LELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKRRAE----- 208 (438)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CChhHHHHHHhhhhhh
Q 013531 207 LPPWLAVHLLQCQSLI 222 (441)
Q Consensus 207 lppw~a~~~~~~q~~~ 222 (441)
..+..+|+.+
T Consensus 209 ------~~~qq~q~~a 218 (438)
T COG4487 209 ------LGSQQVQGEA 218 (438)
T ss_pred ------HHHHHHhHHH
No 466
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=63.95 E-value=2.4e+02 Score=31.43 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=61.5
Q ss_pred hhhcchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhhchhhHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 66 QELKGKDEVVAQKEKAIQDKS-----ERIVSLQKELSSLQKKETLNAAEQVD--KAHARADELEKQIDNLKKESEKQQKE 138 (441)
Q Consensus 66 ~~i~~k~~~l~~ke~~i~ek~-----~~I~~l~~ei~sLq~~~~~~~~~~~~--~a~~~~~eLe~eVe~Lkkeie~~ek~ 138 (441)
+-.+.+.+.|.+.|..+.+.+ ..+.+.-+.+++|.+..+..+..++. +|+.=+.-++..-..|++.-.+.+.+
T Consensus 85 s~~~t~~~~L~~le~ll~~~~~~sl~~~L~~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~ 164 (552)
T COG1256 85 SYLDTRASQLSQLESLLSEPSESSLSTLLNDFFNSLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAE 164 (552)
T ss_pred hHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445566777788888888876 33444555556665544444433332 66655666666666666666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 139 KEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 139 ~eeLEark~eLEkkleELekklEeL 163 (441)
+...-.+.+.+-+++++|+.++-..
T Consensus 165 I~~~V~~vNsLl~qIa~lN~qI~~~ 189 (552)
T COG1256 165 IAATVDEVNSLLKQIADLNKQIRKV 189 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777777777666555
No 467
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=63.73 E-value=1e+02 Score=26.90 Aligned_cols=55 Identities=16% Similarity=0.345 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKI 174 (441)
Q Consensus 120 eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qI 174 (441)
....=+..|...|..+...+..++.........+.+...+...+++..+......
T Consensus 65 ~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~ek~~~~~ 119 (141)
T TIGR02473 65 NYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKEKKQKEY 119 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666665555555555555655555555554443333
No 468
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=63.48 E-value=1.8e+02 Score=31.58 Aligned_cols=103 Identities=11% Similarity=0.174 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 79 EKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK--KESEKQQKEKEALEARAIEAEKKISDL 156 (441)
Q Consensus 79 e~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lk--keie~~ek~~eeLEark~eLEkkleEL 156 (441)
+.++.+-|..|..|...+..-| -.-+++++..|+.|+.+....+...+ ..+-+=..+.+.+-.-.+.|+.++.++
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~---v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~ 298 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKER---ILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEA 298 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666554433 22355666677777777666666663 223334444444445555555555555
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 013531 157 SAKLEKLQK-------INDEQKSKIRKTERALKEE 184 (441)
Q Consensus 157 ekklEeLek-------~~aEQk~qIeelEk~lkee 184 (441)
+.++..|.. .+...+.+|..+++.+.++
T Consensus 299 ~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~e 333 (434)
T PRK15178 299 KAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQ 333 (434)
T ss_pred HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 555555543 3455666666666666644
No 469
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=63.27 E-value=1.8e+02 Score=29.65 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 013531 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (441)
Q Consensus 71 k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lk 129 (441)
+.+-|+++|..-.+ +...|++|+..-.+...+.+.|..-+..|+..|++++...+
T Consensus 18 ~~~l~~eCEe~wk~----me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwq 72 (268)
T PF11802_consen 18 KEELIKECEELWKD----MEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQ 72 (268)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 33444555555544 44578888666556666677777788888888888755543
No 470
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=63.10 E-value=28 Score=35.07 Aligned_cols=35 Identities=11% Similarity=0.242 Sum_probs=17.7
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHH
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK 78 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~k 78 (441)
...+.+|+.+-.+|...|..++.+|.+....|...
T Consensus 179 ~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 179 REKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555544444433
No 471
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=63.02 E-value=1.8e+02 Score=29.59 Aligned_cols=32 Identities=9% Similarity=0.294 Sum_probs=22.4
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHhhhhcchhH
Q 013531 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDE 73 (441)
Q Consensus 42 ~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~ 73 (441)
....+++++++.+...++.++.....++....
T Consensus 83 ~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~ 114 (346)
T PRK10476 83 PYELTVAQAQADLALADAQIMTTQRSVDAERS 114 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888877766554433
No 472
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=62.92 E-value=28 Score=28.90 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=29.6
Q ss_pred hhHhHHHHHHHHHHHHhhHHH---HhhhhcchhHHHHHHHHHHHHHHHHHHHH
Q 013531 43 LKIELDQLKSKIRSLESHIDE---KTQELKGKDEVVAQKEKAIQDKSERIVSL 92 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~---~~~~i~~k~~~l~~ke~~i~ek~~~I~~l 92 (441)
+....+.||.+|...++.|.+ ....+.+...+|++++..|+.+...+..+
T Consensus 26 ~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 26 LDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677789999888888887 33444444444444444444444444333
No 473
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=62.90 E-value=1.2e+02 Score=34.95 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=3.9
Q ss_pred chhHHHHHH
Q 013531 70 GKDEVVAQK 78 (441)
Q Consensus 70 ~k~~~l~~k 78 (441)
.-+++|+++
T Consensus 597 ~~~~~lkek 605 (762)
T PLN03229 597 ELDDDLKEK 605 (762)
T ss_pred CCCHHHHHH
Confidence 334444444
No 474
>PF15456 Uds1: Up-regulated During Septation
Probab=62.72 E-value=1.2e+02 Score=27.33 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (441)
Q Consensus 123 ~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekkl 160 (441)
++|++|++++..+..+++.+....+ ++.++-++-..+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl 58 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSL 58 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3555565555555555555555544 444444444333
No 475
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=62.53 E-value=78 Score=25.24 Aligned_cols=70 Identities=14% Similarity=0.241 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 90 VSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (441)
Q Consensus 90 ~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek 165 (441)
.++.+.|..+.+.....-...+..++..+.++++.++.++-++..... +.+..+..++......+..+.+
T Consensus 6 ~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 6 AEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444432222222333334444444444444444444433321 3334444455555555544443
No 476
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=62.37 E-value=61 Score=33.86 Aligned_cols=28 Identities=11% Similarity=-0.049 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013531 353 RAYGKFLKSATTYHHQVQASVQEMLKKH 380 (441)
Q Consensus 353 ~~~k~~~~~a~~~H~q~Q~~v~~~l~~~ 380 (441)
..|..++...+.+++.-.=+-...|.+.
T Consensus 217 ~~~~~~vq~lQ~~YQ~~~Ly~l~AlG~~ 244 (330)
T PF07851_consen 217 SLYQSVVQFLQYRYQRGCLYRLRALGKR 244 (330)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhccC
Confidence 4556666666666666555566666553
No 477
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=62.19 E-value=85 Score=33.52 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 013531 364 TYHHQVQASVQEMLKKHELT 383 (441)
Q Consensus 364 ~~H~q~Q~~v~~~l~~~e~~ 383 (441)
..|.++...+.+.+..=++.
T Consensus 298 ~~~~~~~~~~~~i~~~Lglp 317 (418)
T TIGR00414 298 EELEEMTSDAEQILQELELP 317 (418)
T ss_pred HHHHHHHHHHHHHHHHcCCc
Confidence 34555555555666555544
No 478
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=62.17 E-value=1.4e+02 Score=28.20 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=15.0
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
......+..+..|+.++..+.+.+..
T Consensus 24 ~~F~~~~~~~~~le~~Lk~l~~~~~~ 49 (236)
T PF09325_consen 24 EWFEEIKDYVDKLEEQLKKLYKSLER 49 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665444443
No 479
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=62.10 E-value=1e+02 Score=32.22 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 79 EKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ---------IDNLKKESEKQQKEKEALEARAIEA 149 (441)
Q Consensus 79 e~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~e---------Ve~Lkkeie~~ek~~eeLEark~eL 149 (441)
+.++.+-++.|.+|+..-..-+ ---+++-+.++++|+.+.... +-+++++.+-+-.-+..|+.+...+
T Consensus 159 qailkqse~lIN~Ls~rAr~dt---~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~i 235 (372)
T COG3524 159 QAILKQSEKLINQLSERARRDT---VRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVI 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 150 EKKISDLSAKLEKLQKINDEQKSKIRKTERALKEEMMRA 188 (441)
Q Consensus 150 EkkleELekklEeLek~~aEQk~qIeelEk~lkeei~k~ 188 (441)
+.++..+.+....-+=.+.-++++++.+++++..++++.
T Consensus 236 qaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~i 274 (372)
T COG3524 236 QAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAI 274 (372)
T ss_pred HHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHh
No 480
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.01 E-value=53 Score=33.24 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=27.5
Q ss_pred CCCchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHH
Q 013531 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK 78 (441)
Q Consensus 39 ~~~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~k 78 (441)
+..-.-.-+..|+.+|+.|+..+...-+.|-+||..|.++
T Consensus 219 ~~~dh~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnL 258 (305)
T KOG3990|consen 219 DPGDHMVKIQKLKEEIARLKKLLHQKDQLILEKDKQISNL 258 (305)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhcc
Confidence 3333445567788888888888888878777766666555
No 481
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=61.97 E-value=47 Score=32.73 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=0.0
Q ss_pred hhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 100 QKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQ--QKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (441)
Q Consensus 100 q~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~--ek~~eeLEark~eLEkkleELekklEeLek~~a 168 (441)
++-.+.|.-++....++|+..++.+.+.|.+.+++- -+++-++|.+..+.+.+++.++.++..|++..+
T Consensus 123 ~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 123 RNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred eeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 482
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=61.92 E-value=33 Score=37.42 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSK 173 (441)
Q Consensus 114 a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~q 173 (441)
..+.+.+-+..+.+|+++++++..+.+.+.....+++.++++++.++..|+...+....+
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
No 483
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=61.84 E-value=70 Score=35.93 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKEEMMR 187 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lkeei~k 187 (441)
+.++-.-..+...++.+++.+-.+|.++..++..++++++..+..-+.+....+..|++.+.++++-+++
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
No 484
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=61.81 E-value=1e+02 Score=26.29 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 013531 86 SERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIE---AEKKISDLSAKLEK 162 (441)
Q Consensus 86 ~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~e---LEkkleELekklEe 162 (441)
++.+.-++++++.- ...-..-++--..+..+..++...+..|...+++++.+...+...... ++.++.+|+.-+..
T Consensus 6 ~~~~~~v~~el~~t-~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~ 84 (99)
T PF10046_consen 6 SKVSKYVESELEAT-NEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYE 84 (99)
T ss_pred HHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 013531 163 LQKINDEQKSKIRKT 177 (441)
Q Consensus 163 Lek~~aEQk~qIeel 177 (441)
|..-..+++.++..+
T Consensus 85 LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 85 LDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHhhcC
No 485
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.60 E-value=39 Score=27.79 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013531 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (441)
Q Consensus 49 ~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~ 101 (441)
.|..+|..||.++.-.++-|.+-++.|.+....|.....+..-|-+++..+|.
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 486
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=61.55 E-value=80 Score=33.78 Aligned_cols=97 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHH
Q 013531 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eV 125 (441)
.+.-+|...+..+..+..+.-... =+.|-.+++.-.+...++..|..+...+.++........ +...+|.+++
T Consensus 3 D~k~ir~n~~~v~~~l~~R~~~~~--vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~-----~~~~~l~~~~ 75 (425)
T PRK05431 3 DIKLIRENPEAVKEALAKRGFPLD--VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKG-----EDAEALIAEV 75 (425)
T ss_pred CHHHHHhCHHHHHHHHHhcCCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CcHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 126 DNLKKESEKQQKEKEALEARAIEA 149 (441)
Q Consensus 126 e~Lkkeie~~ek~~eeLEark~eL 149 (441)
.+|++++..++.+...++.+..++
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 76 KELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 487
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=61.55 E-value=2.7e+02 Score=32.29 Aligned_cols=146 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 013531 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKES 132 (441)
Q Consensus 53 ~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkei 132 (441)
.+-.+|+++.....++..-.+.-...+..+..+.-.++++..|+.-+ ....-...+........+. +.++.-.++.
T Consensus 136 ~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~ra-rqreemneeh~~rlsdtvd---Erlqlhlker 211 (916)
T KOG0249|consen 136 TLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRA-RQREKMNEEHNKRLSDTVD---ERLQLHLKER 211 (916)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhccccccccH---HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHh
Q 013531 133 EKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKEEMMRAKFEATSRSKELTEV 202 (441)
Q Consensus 133 e~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lkeei~k~k~E~~~kAk~l~e~ 202 (441)
...-.+++.|+.....+.+++.+++...+.+...++.+..++++++.....+-+++.---...+....++
T Consensus 212 maAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~~~~e~~~~~ 281 (916)
T KOG0249|consen 212 MAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRDHLRTYAERRRET 281 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHhh
No 488
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=61.50 E-value=2.4e+02 Score=30.41 Aligned_cols=179 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred CchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHH
Q 013531 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (441)
Q Consensus 41 ~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~e 120 (441)
.++-.||..++.-...|+..++.| |+.+-.+..=..++||.|-.-..
T Consensus 263 ~aileeL~eIk~~q~~Leesye~L-------------ke~~krdy~fi~etLQEERyR~e-------------------- 309 (455)
T KOG3850|consen 263 DAILEELREIKETQALLEESYERL-------------KEQIKRDYKFIAETLQEERYRYE-------------------- 309 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH--------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhh
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS-AKLEKLQKINDEQKSKIRKTERALK-EEMMRAKFEATSRSKE 198 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELe-kklEeLek~~aEQk~qIeelEk~lk-eei~k~k~E~~~kAk~ 198 (441)
..=+.|-.-.+=+..++..|..+.+.+|.+++=.. .+-.+++...+.-+.+|.++|-.++ .+....+.=.++.+++
T Consensus 310 --rLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq~qqv~Q~e~~~na~a~~ 387 (455)
T KOG3850|consen 310 --RLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQQQQVVQLEGLENAVARR 387 (455)
T ss_pred --HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHH
Q ss_pred HHHhhhccCChhHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHHHHHHhcccccchHHHHHhhhhhhHHHHHHhhhccc
Q 013531 199 LTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAKWIPAVKEQWVVFTTNV 278 (441)
Q Consensus 199 l~e~h~~wlppw~a~~~~~~q~~~~~~w~~hg~p~~~~~~~ka~~~~~~~~~w~~P~l~~~~~K~~pv~~~~w~~~~~~v 278 (441)
|.= |++.++-. +-+-+
T Consensus 388 llg------------------------------------------------------------k~iNiiLa----lm~Vl 403 (455)
T KOG3850|consen 388 LLG------------------------------------------------------------KFINIILA----LMTVL 403 (455)
T ss_pred HHH------------------------------------------------------------HHHHHHHH----HHHHH
Q ss_pred chhHHHhhhHHHHHHHH-hhhhcchhHHhhhhhcchhHHHH
Q 013531 279 EPHVQTLKTKTIEACEA-TKTAVTPHIIRVQEVVDPYFQEA 318 (441)
Q Consensus 279 ~p~Ve~~ktk~~p~~ea-~r~~~~phv~~vk~~v~Py~~e~ 318 (441)
-..|.++-.++.|..+. +|+.-+=-+..+--+.--|+...
T Consensus 404 LvfVSTIa~~v~PLmkSR~rt~~t~~LV~l~~~~wkhwd~i 444 (455)
T KOG3850|consen 404 LVFVSTIANCVSPLMKSRNRTASTFFLVFLLAFFWKHWDAI 444 (455)
T ss_pred HHHHHHHHhhccHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=61.22 E-value=47 Score=26.19 Aligned_cols=59 Identities=27% Similarity=0.441 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhh------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 78 KEKAIQDKSERIVSLQKELSSLQKKETLN------AAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sLq~~~~~~------~~~~~~~a~~~~~eLe~eVe~Lkkeie~~e 136 (441)
.+..|..+++.+..++.+|.+++++-+.. -.+-+.+-.++..+++.++..|...+..+.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 490
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=61.17 E-value=1.8e+02 Score=29.07 Aligned_cols=137 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHH--HHHHHHHH
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVD--KAHARADE 120 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~--~a~~~~~e 120 (441)
...++.++.+++.++++.+...+-....-+..+......|......+...+..+...+..-.....-.-. -+.....+
T Consensus 60 a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~ 139 (327)
T TIGR02971 60 ARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDS 139 (327)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSA-----KLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELek-----klEeLek~~aEQk~qIeelEk~lk 182 (441)
.+..+..++.+++....+.. .........+..+.. .++..+......+.+++..+..+.
T Consensus 140 ~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 140 KALKLRTAEEELEEALASRS---EQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
No 491
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=61.16 E-value=2.1e+02 Score=31.44 Aligned_cols=109 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhchhhHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 69 KGKDEVVAQKEKAIQD----KSERIVSLQKELSSLQKKETLNAAEQVD--KAHARADELEKQIDNLKKESEKQQKEKEAL 142 (441)
Q Consensus 69 ~~k~~~l~~ke~~i~e----k~~~I~~l~~ei~sLq~~~~~~~~~~~~--~a~~~~~eLe~eVe~Lkkeie~~ek~~eeL 142 (441)
..+.+.+.+.|.++.+ .+..+..+-+-+..|-+..+.....+.. .|+.=+..++..-..|.....+.+.++...
T Consensus 86 ~~~~~~l~~le~~~~~~~~gl~~~l~~ff~a~~~ls~~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~ 165 (547)
T PRK08147 86 TTRYEQMSKIDNLLSDSTNSLSTTMQDFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSS 165 (547)
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q 013531 143 EARAIEAEKKISDLSAKLEKLQ---------KINDEQKSKIRKT 177 (441)
Q Consensus 143 Eark~eLEkkleELekklEeLe---------k~~aEQk~qIeel 177 (441)
-.+.+.+-+++.+|+.++...+ ...+++...++++
T Consensus 166 V~~iN~l~~~Ia~LN~~I~~~~~~~~g~~~ndL~DqRD~ll~eL 209 (547)
T PRK08147 166 VDQINNYAKQIASLNDQITRLTGVGAGASPNDLLDQRDQLVSEL 209 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHHH
No 492
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=61.09 E-value=2e+02 Score=30.78 Aligned_cols=109 Identities=10% Similarity=0.111 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhchhhHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 69 KGKDEVVAQKEKAIQD-----KSERIVSLQKELSSLQKKETLNAAEQVD--KAHARADELEKQIDNLKKESEKQQKEKEA 141 (441)
Q Consensus 69 ~~k~~~l~~ke~~i~e-----k~~~I~~l~~ei~sLq~~~~~~~~~~~~--~a~~~~~eLe~eVe~Lkkeie~~ek~~ee 141 (441)
..+.+.+.+.|.++.+ .+..+..+.+-+..|-+..+.....+.. .|+.=+..++..-..|.......+.++..
T Consensus 89 ~~~~~~l~~le~~~~~~~~~gl~~~l~~ff~a~~~ls~~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~ 168 (431)
T PRK06799 89 NYMNSALSRVESMVGTTGKNSLSSLMDGFFNAFREVAKNPEQANYYDTLISETGKFTSQLNRLAKGLDELEAQTTEDIEA 168 (431)
T ss_pred HHHHHHHHHHHHHhCCCCcCchHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q 013531 142 LEARAIEAEKKISDLSAKLEKLQ-----KINDEQKSKIRKT 177 (441)
Q Consensus 142 LEark~eLEkkleELekklEeLe-----k~~aEQk~qIeel 177 (441)
.-.+.+.+-+++.+|+.++.... ...+++...++++
T Consensus 169 ~V~~iN~ll~~Ia~LN~~I~~~~~~~~ndL~DqRD~ll~eL 209 (431)
T PRK06799 169 HVNEFNRLAKSLAEANKKIGQAGTQVPNQLLDERDRILTEM 209 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHH
No 493
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=61.00 E-value=1.9e+02 Score=31.68 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhchhhHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 69 KGKDEVVAQKEKAIQD-----KSERIVSLQKELSSLQKKETLNAAEQVD--KAHARADELEKQIDNLKKESEKQQKEKEA 141 (441)
Q Consensus 69 ~~k~~~l~~ke~~i~e-----k~~~I~~l~~ei~sLq~~~~~~~~~~~~--~a~~~~~eLe~eVe~Lkkeie~~ek~~ee 141 (441)
..+...+.+.|.++.+ .+..+..+.+-+..|-+..+.....+.. .|+.=+..++.....|...-.+.+.++..
T Consensus 96 ~~~~~~l~~le~~f~~~~~~gl~~~l~~ff~a~~~la~~P~~~~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~ 175 (507)
T PRK07739 96 ETKADALSQMEDIMNEPSDTGLNKVLDQFWNSLQELSKNPENLGARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDV 175 (507)
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 013531 142 LEARAIEAEKKISDLSAKLEK-------LQKINDEQKSKIRKT 177 (441)
Q Consensus 142 LEark~eLEkkleELekklEe-------Lek~~aEQk~qIeel 177 (441)
.-.+.+.+-+++.+|+.++.. -....+++...++++
T Consensus 176 ~V~~iN~ll~~Ia~LN~~I~~~~~~g~~~ndLlDqRD~ll~~L 218 (507)
T PRK07739 176 TVKEINSLASQISDLNKQIAKVEPNGYLPNDLYDQRDLLLDEL 218 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHH
No 494
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=60.80 E-value=1.2e+02 Score=28.52 Aligned_cols=98 Identities=16% Similarity=0.257 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHH
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~e 124 (441)
..|++........+-.+-...-.+.+-...+..-.+.|++++..|..+.+..+-+-.+...--.+-.....--+.+|.++
T Consensus 44 e~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eq 123 (157)
T COG3352 44 EVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQ 123 (157)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQKEKEAL 142 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~eeL 142 (441)
|.+|+...+...+++..+
T Consensus 124 V~el~~i~emv~~d~~~l 141 (157)
T COG3352 124 VNELKMIVEMVIKDLREL 141 (157)
T ss_pred HHHHHHHHHHHhccchhh
No 495
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=60.78 E-value=1.9e+02 Score=31.03 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred hhhccCCCCCCCccCccCCCCchhHhHHHHHHHHHHHHhhH-HHHhhhhcchhHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 013531 21 DVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHI-DEKTQELKGKDEVVAQKEKAIQDK--SERIVSLQKELS 97 (441)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~i~~Les~i-~~~~~~i~~k~~~l~~ke~~i~ek--~~~I~~l~~ei~ 97 (441)
|..+.+-+++--++-....+.-......++..+|+.++..+ ......|..+...|......+.-. ...|...++.++
T Consensus 231 D~ti~D~vAd~ra~TPtaaae~~~p~~~el~qrLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd 310 (432)
T TIGR00237 231 DFTISDFVADLRAPTPSAAAEIVSPNQDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFE 310 (432)
T ss_pred CccHHHHhhhccCCCcHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q ss_pred HhhhhchhhHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 013531 98 SLQKKETLNAAEQVDKAHARADELEKQIDNL--KKESEKQQKEKEALEARAIE-AEKKISDLSAKLEKLQKINDEQ 170 (441)
Q Consensus 98 sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~L--kkeie~~ek~~eeLEark~e-LEkkleELekklEeLek~~aEQ 170 (441)
.|+..-.............++..+...++.+ .+.+.....+++.+..+... +...+...+..++.+....+..
T Consensus 311 ~L~~RL~~a~~~~L~~k~~rL~~L~~rL~aLSPl~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~l~~~~~~l~~l 386 (432)
T TIGR00237 311 KLEKRKQAALNKQLERTRQKKTRLTKRLTQTNPSPQILRAQTRTEQLNRRLNALKNAQANLKLPQFGTLVGKLNAL 386 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 496
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=60.74 E-value=1.7e+02 Score=30.98 Aligned_cols=96 Identities=16% Similarity=0.351 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch---hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQKKET---LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIE 148 (441)
Q Consensus 72 ~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~---~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~e 148 (441)
.+-|.+.++.|......|..+..+|..+...-+ ..+.+....|+..+.+|-.++..++..-++-+.-+.++=.....
T Consensus 17 e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~ 96 (383)
T PF04100_consen 17 EQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQ 96 (383)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013531 149 AEKKISDLSAKLEKLQKIN 167 (441)
Q Consensus 149 LEkkleELekklEeLek~~ 167 (441)
|..-...|..-+.-|+...
T Consensus 97 LD~AKrNLT~SIT~LkrL~ 115 (383)
T PF04100_consen 97 LDNAKRNLTQSITTLKRLQ 115 (383)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 497
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=60.68 E-value=2.5e+02 Score=30.53 Aligned_cols=119 Identities=22% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHH---------
Q 013531 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHAR--------- 117 (441)
Q Consensus 47 l~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~--------- 117 (441)
|.|||.+--+|+-.++.- -|.++..+=|.|.-|+.|-.+||++-..-.-.-..-+.--
T Consensus 181 leQLRre~V~lentlEQE-------------qEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~ 247 (552)
T KOG2129|consen 181 LEQLRREAVQLENTLEQE-------------QEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDE 247 (552)
T ss_pred HHHHHHHHHHHhhHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCch
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~ 180 (441)
+..+..-|+.|+.+++.+..+.. -+++.--++...=+..++.--+.....|+..++++++.
T Consensus 248 a~~~~~hi~~l~~EveRlrt~l~--~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erR 308 (552)
T KOG2129|consen 248 AAAEKLHIDKLQAEVERLRTYLS--RAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERR 308 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
No 498
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=60.34 E-value=2.9 Score=47.56 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=0.0
Q ss_pred hHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEK 139 (441)
Q Consensus 60 ~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~ 139 (441)
++.++++++..-.....+..+...|.+.++..++++|..+....................+++.++++++.++++.+...
T Consensus 11 qF~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~le~~l~e~~~~~ 90 (759)
T PF01496_consen 11 QFRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEELEELEEELRELNENL 90 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 140 EALEARAIEAEKKISDLSAKLEKLQK 165 (441)
Q Consensus 140 eeLEark~eLEkkleELekklEeLek 165 (441)
+.+..+.++++.+.+.++...+.+..
T Consensus 91 e~L~~~~~~L~E~~~~L~~~~~~l~~ 116 (759)
T PF01496_consen 91 EKLEEELNELEEEKNVLEEEIEFLEE 116 (759)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
No 499
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=59.74 E-value=2.1e+02 Score=29.95 Aligned_cols=150 Identities=20% Similarity=0.219 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHH
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~ 123 (441)
+.|...+...|-+ ++.--..+-..+.+.+-+.=-|+.+..-+.....-++.+.-.+.++ |+-+..+++.---.
T Consensus 151 p~eaq~Iaqailk-qse~lIN~Ls~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kn------gvfdp~~qaevq~~ 223 (372)
T COG3524 151 PKEAQKIAQAILK-QSEKLINQLSERARRDTVRFAEEEVQKAEERVKKASNDLTDYRIKN------GVFDPKAQAEVQMS 223 (372)
T ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc------CccChhhhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHhhhhhhhh
Q 013531 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER--ALK---EEMMRAKFEATSRSKE 198 (441)
Q Consensus 124 eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk--~lk---eei~k~k~E~~~kAk~ 198 (441)
.|..|+.++..++.++..+.+..+.-.-++--|..+++.+.+....+...|.--+. .+. +|-+++..|.+-..++
T Consensus 224 Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~~qaAefq~l~lE~~fAeka 303 (372)
T COG3524 224 LVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLSNQAAEFQRLYLENTFAEKA 303 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 013531 199 LT 200 (441)
Q Consensus 199 l~ 200 (441)
++
T Consensus 304 y~ 305 (372)
T COG3524 304 YA 305 (372)
T ss_pred HH
No 500
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=59.73 E-value=2.7e+02 Score=30.61 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hchhhHHhhHHHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK--KETLNAAEQVDKAHARADELEKQIDN 127 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~--~~~~~~~~~~~~a~~~~~eLe~eVe~ 127 (441)
|..+|..|.-+|....-=++--+.-=..-|+.|.+|-+.|-++-+-=.+||+ +.....++........-..|.-++.+
T Consensus 343 Le~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK 422 (527)
T PF15066_consen 343 LEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKK 422 (527)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 013531 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKEEMMRAKFEATSRSKEL 199 (441)
Q Consensus 128 Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lkeei~k~k~E~~~kAk~l 199 (441)
++..-..+..+.-.--..++.--.+--+..+-+-.-+..+.-++..-.++|+..---+..++.|....-+++
T Consensus 423 ~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~Eqef 494 (527)
T PF15066_consen 423 IKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEF 494 (527)
T ss_pred HhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!