Query 013531
Match_columns 441
No_of_seqs 186 out of 254
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 12:20:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a01_A Apolipoprotein A-I; fou 99.1 2.9E-10 1E-14 109.6 8.7 106 254-363 132-237 (243)
2 3s84_A Apolipoprotein A-IV; fo 98.8 2.8E-08 9.5E-13 97.6 10.8 58 296-353 93-150 (273)
3 2lem_A Apolipoprotein A-I; lip 98.8 5.5E-09 1.9E-13 99.1 5.3 101 254-360 109-209 (216)
4 3s84_A Apolipoprotein A-IV; fo 98.7 2.5E-06 8.4E-11 83.8 23.6 47 300-346 163-209 (273)
5 1nfn_A Apolipoprotein E3; lipi 98.7 4.1E-08 1.4E-12 91.8 8.5 84 254-341 106-189 (191)
6 2a01_A Apolipoprotein A-I; fou 98.6 3.2E-08 1.1E-12 95.3 7.0 105 255-363 111-226 (243)
7 1nfn_A Apolipoprotein E3; lipi 98.6 6.7E-08 2.3E-12 90.3 6.2 112 248-363 78-189 (191)
8 3r2p_A Apolipoprotein A-I; amp 98.5 1.1E-07 3.7E-12 88.0 7.1 113 254-373 67-179 (185)
9 2l7b_A Apolipoprotein E, APO-E 98.5 1.5E-07 5.1E-12 93.9 7.7 102 255-360 159-289 (307)
10 3r2p_A Apolipoprotein A-I; amp 98.4 1.9E-07 6.4E-12 86.4 6.0 86 274-359 94-179 (185)
11 2lem_A Apolipoprotein A-I; lip 98.3 3.2E-07 1.1E-11 86.9 5.0 110 274-387 81-190 (216)
12 1gs9_A Apolipoprotein E, APOE4 98.3 1.8E-07 6E-12 85.7 2.7 91 255-349 74-164 (165)
13 3na7_A HP0958; flagellar bioge 98.2 0.00012 4E-09 70.7 20.9 65 118-182 92-156 (256)
14 2l7b_A Apolipoprotein E, APO-E 98.2 2.3E-06 7.8E-11 85.4 7.3 102 254-359 114-230 (307)
15 1c1g_A Tropomyosin; contractIl 98.0 0.0013 4.6E-08 60.0 22.4 50 50-99 4-53 (284)
16 3na7_A HP0958; flagellar bioge 98.0 0.0011 3.6E-08 64.0 22.0 71 123-193 90-160 (256)
17 1gs9_A Apolipoprotein E, APOE4 97.8 2.5E-05 8.5E-10 71.4 5.6 78 281-358 74-151 (165)
18 2dfs_A Myosin-5A; myosin-V, in 97.6 0.00049 1.7E-08 78.8 14.7 125 50-182 919-1047(1080)
19 2v71_A Nuclear distribution pr 97.4 0.014 4.8E-07 54.4 18.8 99 74-176 50-155 (189)
20 3oja_B Anopheles plasmodium-re 97.2 0.0063 2.1E-07 63.9 16.0 26 74-99 464-489 (597)
21 2efr_A General control protein 97.2 0.049 1.7E-06 49.3 19.4 90 44-141 27-116 (155)
22 1i84_S Smooth muscle myosin he 97.1 0.0012 4E-08 76.1 10.1 18 46-63 858-875 (1184)
23 1i84_S Smooth muscle myosin he 97.1 0.0011 3.8E-08 76.4 9.1 43 40-82 859-901 (1184)
24 2fxo_A Myosin heavy chain, car 97.0 0.092 3.2E-06 45.7 18.5 60 119-178 65-124 (129)
25 2v71_A Nuclear distribution pr 97.0 0.13 4.6E-06 47.8 20.5 130 45-181 17-146 (189)
26 2efr_A General control protein 96.9 0.18 6.1E-06 45.6 20.2 120 55-182 3-129 (155)
27 2fxo_A Myosin heavy chain, car 96.9 0.074 2.5E-06 46.3 17.0 112 45-164 13-124 (129)
28 2dfs_A Myosin-5A; myosin-V, in 96.8 0.031 1.1E-06 64.1 17.8 59 111-172 986-1044(1080)
29 3oja_B Anopheles plasmodium-re 96.5 0.025 8.7E-07 59.3 13.8 61 118-178 518-578 (597)
30 3o0z_A RHO-associated protein 96.5 0.51 1.7E-05 43.2 20.7 52 113-164 87-138 (168)
31 3u1c_A Tropomyosin alpha-1 cha 96.4 0.12 4E-06 43.4 14.7 95 47-163 4-98 (101)
32 3vkg_A Dynein heavy chain, cyt 96.4 0.71 2.4E-05 58.4 26.9 37 63-99 1931-1967(3245)
33 2v66_B Nuclear distribution pr 96.2 0.23 7.9E-06 42.6 15.5 63 114-176 33-102 (111)
34 3u59_A Tropomyosin beta chain; 96.2 0.18 6E-06 42.1 14.2 15 48-62 5-19 (101)
35 3tnu_B Keratin, type II cytosk 96.1 0.039 1.3E-06 48.0 10.6 84 72-155 28-121 (129)
36 3o0z_A RHO-associated protein 96.1 0.42 1.4E-05 43.7 17.6 50 51-100 5-54 (168)
37 3tnu_A Keratin, type I cytoske 96.1 0.039 1.3E-06 48.1 10.5 97 60-156 18-124 (131)
38 3a7p_A Autophagy protein 16; c 95.9 0.11 3.7E-06 46.8 12.3 50 44-100 60-109 (152)
39 3u1c_A Tropomyosin alpha-1 cha 95.7 0.41 1.4E-05 40.0 14.7 62 114-175 35-96 (101)
40 2eqb_B RAB guanine nucleotide 95.6 0.21 7.1E-06 41.9 12.2 29 42-70 2-30 (97)
41 3vkg_A Dynein heavy chain, cyt 95.4 0.95 3.2E-05 57.3 22.3 21 223-243 2159-2179(3245)
42 3nmd_A CGMP dependent protein 95.4 0.032 1.1E-06 44.4 6.2 47 54-100 21-67 (72)
43 3u59_A Tropomyosin beta chain; 95.2 0.6 2.1E-05 38.8 14.0 63 113-175 34-96 (101)
44 3nmd_A CGMP dependent protein 94.9 0.04 1.4E-06 43.9 5.4 41 60-100 20-60 (72)
45 2oto_A M protein; helical coil 94.3 2.6 8.9E-05 37.3 18.6 52 49-100 26-77 (155)
46 3hnw_A Uncharacterized protein 94.3 0.38 1.3E-05 42.5 11.1 30 117-146 104-133 (138)
47 2jee_A YIIU; FTSZ, septum, coi 93.6 0.98 3.3E-05 36.6 11.0 19 82-100 8-26 (81)
48 3a7o_A Autophagy protein 16; c 93.5 0.21 7.2E-06 39.5 6.8 50 59-108 18-67 (75)
49 3a7p_A Autophagy protein 16; c 93.4 0.92 3.1E-05 40.8 11.8 49 44-99 67-115 (152)
50 3ghg_A Fibrinogen alpha chain; 93.4 1.1 3.6E-05 47.6 13.9 38 120-157 114-151 (562)
51 1ic2_A Tropomyosin alpha chain 93.3 1.2 4.1E-05 35.6 11.2 48 113-160 24-71 (81)
52 2ocy_A RAB guanine nucleotide 93.0 1.4 4.8E-05 39.7 12.4 17 112-128 75-91 (154)
53 3ghg_A Fibrinogen alpha chain; 92.9 1.3 4.5E-05 46.9 13.7 95 50-148 62-156 (562)
54 2xzr_A Immunoglobulin-binding 92.7 3.9 0.00013 34.2 15.9 97 54-158 8-104 (114)
55 3hnw_A Uncharacterized protein 92.7 2 6.8E-05 37.9 12.8 50 117-166 76-125 (138)
56 2e7s_A RAB guanine nucleotide 92.6 0.52 1.8E-05 41.7 8.8 17 112-128 63-79 (135)
57 1l8d_A DNA double-strand break 92.4 2.2 7.6E-05 35.3 12.3 24 78-101 22-45 (112)
58 3tnu_B Keratin, type II cytosk 92.4 1.7 5.7E-05 37.6 11.7 69 111-182 31-99 (129)
59 2b9c_A Striated-muscle alpha t 92.2 4.2 0.00015 36.1 14.4 24 117-140 53-76 (147)
60 2ocy_A RAB guanine nucleotide 92.1 6.5 0.00022 35.4 19.3 24 113-136 69-92 (154)
61 3tnu_A Keratin, type I cytoske 91.9 1.5 5.2E-05 38.0 10.9 69 111-182 33-101 (131)
62 2v4h_A NF-kappa-B essential mo 91.7 1.3 4.4E-05 37.8 9.8 15 45-59 24-38 (110)
63 2b9c_A Striated-muscle alpha t 91.6 7 0.00024 34.7 15.2 51 114-164 71-121 (147)
64 2v66_B Nuclear distribution pr 91.4 6.1 0.00021 33.7 16.2 94 49-160 7-100 (111)
65 3ol1_A Vimentin; structural ge 91.4 4.6 0.00016 34.5 13.3 24 42-65 17-40 (119)
66 3swk_A Vimentin; cytoskeleton, 90.5 3 0.0001 33.9 10.7 14 48-61 3-16 (86)
67 3qh9_A Liprin-beta-2; coiled-c 90.4 0.83 2.8E-05 37.0 7.0 57 41-97 22-78 (81)
68 1deq_A Fibrinogen (alpha chain 90.0 4.5 0.00015 41.3 13.7 10 121-130 118-127 (390)
69 2e7s_A RAB guanine nucleotide 89.8 1.4 4.7E-05 39.0 8.6 20 117-136 61-80 (135)
70 3s4r_A Vimentin; alpha-helix, 89.5 4.7 0.00016 33.1 11.2 37 122-158 55-91 (93)
71 2pms_C Pneumococcal surface pr 89.4 2.1 7.1E-05 37.4 9.3 26 49-74 10-35 (125)
72 2jee_A YIIU; FTSZ, septum, coi 89.1 7.9 0.00027 31.3 12.4 28 73-100 6-33 (81)
73 1m1j_B Fibrinogen beta chain; 88.9 7.5 0.00026 40.7 14.9 15 168-182 178-192 (464)
74 1m1j_C Fibrinogen gamma chain; 88.8 5.1 0.00017 41.3 13.4 11 120-130 88-98 (409)
75 1d7m_A Cortexillin I; coiled-c 88.8 9 0.00031 31.6 12.2 9 92-100 2-10 (101)
76 2zqm_A Prefoldin beta subunit 88.2 6.3 0.00022 32.5 11.5 41 45-85 6-46 (117)
77 1ic2_A Tropomyosin alpha chain 88.0 8.6 0.00029 30.5 12.7 42 127-168 10-51 (81)
78 3swk_A Vimentin; cytoskeleton, 87.9 7.4 0.00025 31.5 11.2 63 119-181 17-79 (86)
79 1deq_A Fibrinogen (alpha chain 87.8 11 0.00037 38.5 14.6 93 50-146 65-157 (390)
80 2pms_C Pneumococcal surface pr 87.4 5.1 0.00017 34.9 10.5 21 79-99 12-32 (125)
81 3oja_A Leucine-rich immune mol 87.4 15 0.00051 37.4 15.9 29 154-182 438-466 (487)
82 3efg_A Protein SLYX homolog; x 86.7 2.1 7.3E-05 34.2 7.2 43 140-182 10-52 (78)
83 1l8d_A DNA double-strand break 86.5 12 0.00043 30.7 13.0 19 81-99 18-36 (112)
84 4gkw_A Spindle assembly abnorm 86.4 17 0.00057 32.1 17.2 40 87-134 39-78 (167)
85 2zqm_A Prefoldin beta subunit 86.4 9 0.00031 31.6 11.4 26 48-73 16-41 (117)
86 3mq9_A Bone marrow stromal ant 86.3 30 0.001 35.0 17.5 22 127-148 401-422 (471)
87 2eqb_B RAB guanine nucleotide 85.5 13 0.00043 31.1 11.5 20 157-176 75-94 (97)
88 1m1j_A Fibrinogen alpha subuni 85.2 24 0.00081 36.9 15.8 40 144-183 118-157 (491)
89 3i00_A HIP-I, huntingtin-inter 84.1 12 0.00041 32.2 11.2 19 118-136 42-60 (120)
90 1m1j_B Fibrinogen beta chain; 83.3 20 0.00069 37.5 14.6 23 147-169 171-193 (464)
91 1fxk_A Prefoldin; archaeal pro 83.3 10 0.00035 30.8 10.1 37 49-85 5-41 (107)
92 3mov_A Lamin-B1; LMNB1, B-type 83.2 6.1 0.00021 32.7 8.7 43 115-157 43-85 (95)
93 1gk4_A Vimentin; intermediate 82.6 17 0.00058 29.0 11.9 48 113-160 30-77 (84)
94 1m1j_A Fibrinogen alpha subuni 82.5 30 0.001 36.1 15.2 50 50-99 63-112 (491)
95 1fxk_A Prefoldin; archaeal pro 82.1 16 0.00054 29.6 10.9 33 46-78 9-41 (107)
96 3oja_A Leucine-rich immune mol 81.2 35 0.0012 34.7 15.4 24 159-182 450-473 (487)
97 2oto_A M protein; helical coil 81.1 28 0.00096 30.6 19.6 45 56-100 26-70 (155)
98 2xnx_M M protein, M1-BC1; cell 81.1 3.2 0.00011 37.1 6.5 66 117-182 60-125 (146)
99 1x8y_A Lamin A/C; structural p 80.1 15 0.0005 29.6 9.7 46 116-161 35-80 (86)
100 3iv1_A Tumor susceptibility ge 79.9 11 0.00039 30.2 8.8 37 140-176 35-71 (78)
101 3c9i_A Tail needle protein GP2 79.4 18 0.00063 34.0 11.3 49 52-100 77-125 (242)
102 2lf0_A Uncharacterized protein 79.4 3.4 0.00012 35.7 5.9 50 42-100 7-56 (123)
103 3iyk_A VP5; icosahedral virus; 79.3 68 0.0023 33.9 18.8 12 351-362 425-436 (526)
104 1x79_B RAB GTPase binding effe 78.9 30 0.001 29.5 12.7 70 119-188 9-82 (112)
105 3mq7_A Bone marrow stromal ant 78.9 31 0.0011 29.7 13.9 15 114-128 44-58 (121)
106 1m1j_C Fibrinogen gamma chain; 78.4 12 0.0004 38.6 10.7 7 171-177 118-124 (409)
107 2yko_A LINE-1 ORF1P; RNA-bindi 78.4 2.4 8.3E-05 40.6 5.2 49 48-96 2-50 (233)
108 3c9i_A Tail needle protein GP2 77.7 23 0.00077 33.4 11.3 55 124-178 85-139 (242)
109 1jcd_A Major outer membrane li 77.6 11 0.00038 28.0 7.5 24 119-142 7-30 (52)
110 4emc_A Monopolin complex subun 77.5 14 0.00048 34.3 9.8 7 261-267 132-138 (190)
111 2w83_C C-JUN-amino-terminal ki 77.3 26 0.00089 28.0 10.2 62 121-182 7-68 (77)
112 2d4y_A HAP1, flagellar HOOK-as 77.2 68 0.0023 32.8 16.9 95 69-163 22-122 (463)
113 1fxk_C Protein (prefoldin); ar 77.1 33 0.0011 29.0 13.1 24 47-70 3-26 (133)
114 3i00_A HIP-I, huntingtin-inter 77.0 16 0.00054 31.5 9.5 11 89-99 17-27 (120)
115 3ghg_C Fibrinogen gamma chain; 76.4 44 0.0015 34.4 14.3 32 118-149 86-117 (411)
116 2lw1_A ABC transporter ATP-bin 76.2 21 0.0007 28.7 9.6 28 117-144 57-84 (89)
117 3efg_A Protein SLYX homolog; x 75.9 7.3 0.00025 31.1 6.6 29 117-145 15-43 (78)
118 4ad8_A DNA repair protein RECN 75.8 76 0.0026 32.6 17.0 45 58-102 192-242 (517)
119 3trt_A Vimentin; cytoskeleton, 75.6 14 0.00047 28.7 8.1 41 59-99 35-75 (77)
120 3cve_A Homer protein homolog 1 74.6 30 0.001 27.3 9.8 54 111-167 9-62 (72)
121 1cii_A Colicin IA; bacteriocin 74.6 89 0.0031 32.9 16.5 32 382-413 552-584 (602)
122 2no2_A HIP-I, huntingtin-inter 74.4 38 0.0013 28.4 15.4 21 80-100 22-42 (107)
123 2lw1_A ABC transporter ATP-bin 74.0 17 0.00059 29.1 8.6 20 133-152 25-44 (89)
124 3he5_B Synzip2; heterodimeric 73.2 7.4 0.00025 28.0 5.3 21 83-103 27-47 (52)
125 1zxa_A CGMP-dependent protein 72.9 3.9 0.00013 32.0 4.1 38 63-100 15-52 (67)
126 3jsv_C NF-kappa-B essential mo 72.7 25 0.00087 29.1 9.2 22 78-99 14-35 (94)
127 1x79_B RAB GTPase binding effe 72.4 45 0.0015 28.4 12.2 80 109-191 20-99 (112)
128 3cvf_A Homer-3, homer protein 72.2 36 0.0012 27.3 10.5 54 111-167 15-68 (79)
129 2qyw_A Vesicle transport throu 71.9 38 0.0013 27.9 10.4 50 51-100 25-76 (102)
130 1ik9_A DNA repair protein XRCC 71.5 50 0.0017 30.9 12.3 23 121-143 151-173 (213)
131 1oef_A Apolipoprotein E; glyco 71.3 3.3 0.00011 26.2 2.9 21 343-363 2-22 (26)
132 2nrj_A HBL B protein; enteroto 71.3 59 0.002 32.4 13.5 63 42-104 120-193 (346)
133 3q8t_A Beclin-1; autophagy, AT 71.0 42 0.0014 27.5 13.6 38 126-163 56-93 (96)
134 2oqq_A Transcription factor HY 70.8 6 0.0002 28.2 4.3 30 74-103 4-33 (42)
135 3vp9_A General transcriptional 70.8 7.3 0.00025 32.2 5.6 80 120-199 11-91 (92)
136 1d7m_A Cortexillin I; coiled-c 70.3 44 0.0015 27.5 14.8 50 115-164 45-94 (101)
137 1x8y_A Lamin A/C; structural p 70.1 41 0.0014 27.0 10.7 48 131-178 29-76 (86)
138 1go4_E MAD1 (mitotic arrest de 69.7 24 0.00082 29.6 8.6 35 114-148 10-44 (100)
139 3he5_A Synzip1; heterodimeric 69.7 20 0.00069 25.4 6.8 16 88-103 4-19 (49)
140 2qih_A Protein USPA1; trimeric 69.6 60 0.0021 28.7 17.8 60 123-182 82-141 (157)
141 4etp_A Kinesin-like protein KA 69.0 8.6 0.00029 39.2 7.0 56 45-100 3-58 (403)
142 1lwu_C Fibrinogen gamma chain; 69.0 8 0.00027 38.6 6.5 45 56-100 9-53 (323)
143 1ses_A Seryl-tRNA synthetase; 68.3 37 0.0013 34.7 11.5 28 73-100 28-55 (421)
144 2b5u_A Colicin E3; high resolu 68.1 1.3E+02 0.0043 31.9 17.5 21 78-98 333-353 (551)
145 2v4h_A NF-kappa-B essential mo 68.0 56 0.0019 27.8 12.3 32 68-99 26-57 (110)
146 1vcs_A Vesicle transport throu 66.7 52 0.0018 27.0 10.2 59 68-133 33-91 (102)
147 1wt6_A Myotonin-protein kinase 65.9 51 0.0018 26.6 9.4 27 109-135 45-71 (81)
148 2yy0_A C-MYC-binding protein; 65.4 3.2 0.00011 30.8 2.2 29 40-68 21-49 (53)
149 1wle_A Seryl-tRNA synthetase; 65.3 74 0.0025 33.4 13.4 29 229-257 217-247 (501)
150 2oqq_A Transcription factor HY 65.2 23 0.00079 25.2 6.4 29 140-168 6-34 (42)
151 4etp_A Kinesin-like protein KA 65.1 10 0.00035 38.6 6.6 26 120-145 7-32 (403)
152 3htk_A Structural maintenance 64.7 28 0.00094 25.6 7.3 49 49-97 9-57 (60)
153 1gk4_A Vimentin; intermediate 64.2 52 0.0018 26.1 10.6 23 46-68 2-24 (84)
154 1wt6_A Myotonin-protein kinase 62.3 38 0.0013 27.3 8.0 20 117-136 46-65 (81)
155 1t2k_D Cyclic-AMP-dependent tr 61.8 21 0.00072 26.7 6.2 28 73-100 22-49 (61)
156 1wle_A Seryl-tRNA synthetase; 61.4 56 0.0019 34.3 11.6 18 252-269 214-231 (501)
157 3he5_B Synzip2; heterodimeric 61.1 28 0.00096 25.0 6.3 40 128-167 8-47 (52)
158 3iox_A AGI/II, PA; alpha helix 60.8 1.7E+02 0.0058 30.8 15.6 89 87-182 9-97 (497)
159 3etw_A Adhesin A; antiparallel 60.8 81 0.0028 27.1 15.6 35 154-188 71-107 (119)
160 1jcd_A Major outer membrane li 60.7 48 0.0016 24.5 7.9 12 85-96 16-27 (52)
161 2xnx_M M protein, M1-BC1; cell 60.7 26 0.00089 31.2 7.5 13 122-134 86-98 (146)
162 2dq0_A Seryl-tRNA synthetase; 60.3 52 0.0018 34.0 11.0 17 165-181 83-99 (455)
163 3uun_A Dystrophin; triple heli 60.2 62 0.0021 25.6 15.6 28 149-176 83-110 (119)
164 1gk6_A Vimentin; intermediate 59.3 53 0.0018 24.5 8.4 49 113-161 4-52 (59)
165 4emc_A Monopolin complex subun 59.2 35 0.0012 31.6 8.3 41 117-157 14-54 (190)
166 3uul_A Utrophin; spectrin repe 59.1 65 0.0022 25.5 15.0 28 149-176 83-110 (118)
167 3iv1_A Tumor susceptibility ge 59.0 68 0.0023 25.7 11.2 12 88-99 19-30 (78)
168 1cii_A Colicin IA; bacteriocin 59.0 1.8E+02 0.0062 30.6 15.3 19 82-100 358-376 (602)
169 1g6u_A Domain swapped dimer; d 58.6 37 0.0013 24.0 6.4 27 73-99 20-46 (48)
170 3a7o_A Autophagy protein 16; c 58.3 41 0.0014 26.6 7.3 56 47-102 13-68 (75)
171 1gd2_E Transcription factor PA 58.0 18 0.00063 28.2 5.4 13 82-94 31-43 (70)
172 3m0d_C TNF receptor-associated 57.9 44 0.0015 25.4 7.5 14 86-99 26-39 (65)
173 2ke4_A CDC42-interacting prote 57.9 79 0.0027 26.1 10.1 29 150-178 61-89 (98)
174 2dq0_A Seryl-tRNA synthetase; 57.9 47 0.0016 34.4 10.1 10 90-99 41-50 (455)
175 3u0c_A Invasin IPAB, 62 kDa an 57.6 92 0.0032 28.5 10.6 37 128-164 108-144 (201)
176 2yko_A LINE-1 ORF1P; RNA-bindi 57.3 21 0.00073 34.1 6.8 19 285-303 157-176 (233)
177 3cvf_A Homer-3, homer protein 57.3 44 0.0015 26.8 7.6 25 139-163 15-39 (79)
178 2i1j_A Moesin; FERM, coiled-co 56.8 10 0.00035 40.4 5.1 29 149-177 410-438 (575)
179 1fxk_C Protein (prefoldin); ar 56.7 88 0.003 26.3 12.8 41 53-93 2-42 (133)
180 3uux_B Mitochondrial division 56.7 46 0.0016 31.9 8.9 55 125-179 151-205 (242)
181 1j1d_C Troponin I, TNI; THIN f 56.6 1E+02 0.0035 26.9 11.2 46 119-164 61-106 (133)
182 4dyl_A Tyrosine-protein kinase 56.6 54 0.0018 33.0 10.2 38 47-84 304-341 (406)
183 2wt7_A Proto-oncogene protein 56.5 61 0.0021 24.3 8.7 9 51-59 9-17 (63)
184 2yy0_A C-MYC-binding protein; 56.5 8.2 0.00028 28.6 3.0 30 44-73 18-47 (53)
185 2i1j_A Moesin; FERM, coiled-co 56.4 37 0.0013 36.2 9.2 70 113-182 360-429 (575)
186 1gd2_E Transcription factor PA 56.3 20 0.00069 28.0 5.4 14 86-99 28-41 (70)
187 3m9b_A Proteasome-associated A 56.3 16 0.00053 35.4 5.7 14 87-100 54-67 (251)
188 3qne_A Seryl-tRNA synthetase, 55.8 63 0.0021 33.9 10.7 19 228-246 182-200 (485)
189 1ci6_A Transcription factor AT 55.7 35 0.0012 25.8 6.6 6 123-128 51-56 (63)
190 1ses_A Seryl-tRNA synthetase; 55.6 27 0.00092 35.7 7.8 23 160-182 73-95 (421)
191 1g6u_A Domain swapped dimer; d 55.3 49 0.0017 23.4 6.6 16 90-105 3-18 (48)
192 3ghg_C Fibrinogen gamma chain; 54.9 1.1E+02 0.0037 31.6 12.0 25 75-99 40-64 (411)
193 2zdi_C Prefoldin subunit alpha 54.8 42 0.0014 29.1 8.0 27 44-70 8-34 (151)
194 3ghg_B Fibrinogen beta chain; 54.7 1.2E+02 0.0041 31.7 12.4 17 149-165 168-184 (461)
195 2wt7_A Proto-oncogene protein 54.7 65 0.0022 24.2 8.4 28 117-144 24-51 (63)
196 1oef_A Apolipoprotein E; glyco 53.8 10 0.00035 23.9 2.8 22 278-299 3-24 (26)
197 3m0d_C TNF receptor-associated 53.8 70 0.0024 24.2 9.1 18 79-96 5-22 (65)
198 3he5_A Synzip1; heterodimeric 52.8 41 0.0014 23.9 5.9 13 87-99 10-22 (49)
199 3mq7_A Bone marrow stromal ant 52.7 1.1E+02 0.0038 26.3 12.5 6 92-97 30-35 (121)
200 2nrj_A HBL B protein; enteroto 52.7 1.2E+02 0.0042 30.0 11.9 14 267-280 316-329 (346)
201 3ajw_A Flagellar FLIJ protein; 52.4 1E+02 0.0036 25.8 17.4 58 118-175 69-126 (150)
202 2zdi_C Prefoldin subunit alpha 52.3 74 0.0025 27.6 9.1 28 51-78 8-35 (151)
203 2xv5_A Lamin-A/C; structural p 51.9 77 0.0026 24.9 8.2 41 117-157 13-53 (74)
204 1ytz_T Troponin T; muscle, THI 51.8 43 0.0015 28.3 7.1 44 120-163 46-89 (107)
205 2wps_A Trimeric autotransporte 51.3 1.1E+02 0.0037 25.7 11.3 79 50-132 18-99 (107)
206 3qne_A Seryl-tRNA synthetase, 51.3 38 0.0013 35.6 8.1 18 252-269 180-197 (485)
207 1t2k_D Cyclic-AMP-dependent tr 51.0 73 0.0025 23.6 8.1 19 118-136 24-42 (61)
208 3hhm_B NISH2 P85alpha; PI3KCA, 50.6 2.1E+02 0.0071 28.8 16.5 52 114-165 203-254 (373)
209 3mov_A Lamin-B1; LMNB1, B-type 50.4 1E+02 0.0035 25.2 10.4 10 93-102 11-20 (95)
210 1t3j_A Mitofusin 1; coiled coi 50.2 1E+02 0.0035 25.5 9.0 20 81-100 48-67 (96)
211 3m91_A Proteasome-associated A 50.2 73 0.0025 23.4 7.2 33 129-161 15-47 (51)
212 1j1d_B Troponin T, TNT; THIN f 49.7 39 0.0013 28.5 6.5 44 120-163 46-89 (106)
213 1j1d_C Troponin I, TNI; THIN f 48.8 60 0.002 28.4 7.8 43 115-157 64-106 (133)
214 2w83_C C-JUN-amino-terminal ki 48.6 1E+02 0.0035 24.6 9.2 34 115-148 36-69 (77)
215 1hjb_A Ccaat/enhancer binding 48.5 70 0.0024 25.9 7.6 38 112-149 32-69 (87)
216 3qh9_A Liprin-beta-2; coiled-c 48.1 1.1E+02 0.0037 24.7 10.8 51 127-177 23-73 (81)
217 1deb_A APC protein, adenomatou 48.1 52 0.0018 24.3 6.0 41 117-157 11-51 (54)
218 4dzn_A Coiled-coil peptide CC- 47.8 17 0.00058 23.9 3.0 21 43-63 7-27 (33)
219 1ci6_A Transcription factor AT 47.5 88 0.003 23.5 8.4 14 119-132 26-39 (63)
220 3u06_A Protein claret segregat 47.4 31 0.0011 35.2 6.7 26 120-145 7-32 (412)
221 3cve_A Homer protein homolog 1 47.0 1E+02 0.0035 24.2 10.5 21 116-136 7-27 (72)
222 1ik9_A DNA repair protein XRCC 47.0 1.8E+02 0.0062 27.0 13.3 60 116-181 139-198 (213)
223 1f5n_A Interferon-induced guan 46.7 2.9E+02 0.01 29.4 15.1 27 110-136 488-514 (592)
224 3onj_A T-snare VTI1; helix, HA 46.6 1.2E+02 0.004 24.7 9.9 88 42-138 5-95 (97)
225 2ke4_A CDC42-interacting prote 45.0 1.3E+02 0.0044 24.8 9.4 30 115-144 61-90 (98)
226 3ra3_A P1C; coiled coil domain 44.9 27 0.00094 22.2 3.6 21 43-63 5-25 (28)
227 2wq1_A General control protein 44.9 31 0.001 23.3 4.0 24 77-100 4-27 (33)
228 3faj_A ORF131, putative unchar 44.8 25 0.00086 30.6 4.6 65 280-344 66-133 (151)
229 1j1e_C Troponin I, TNI; THIN f 44.6 1.9E+02 0.0064 26.5 11.2 46 119-164 61-106 (180)
230 3uux_B Mitochondrial division 44.4 2.2E+02 0.0075 27.3 11.5 13 57-69 80-92 (242)
231 2w6a_A ARF GTPase-activating p 42.4 1.1E+02 0.0038 23.3 7.3 49 43-105 11-59 (63)
232 3lss_A Seryl-tRNA synthetase; 42.2 1.4E+02 0.0047 31.3 10.7 27 230-256 207-235 (484)
233 1go4_E MAD1 (mitotic arrest de 42.1 1.5E+02 0.0051 24.7 10.3 30 111-140 14-43 (100)
234 1nkp_B MAX protein, MYC proto- 41.8 69 0.0023 25.0 6.5 34 113-146 44-77 (83)
235 2c5k_T Syntaxin TLG1, T-snare 41.6 1.4E+02 0.0048 24.3 8.6 49 50-100 15-63 (95)
236 3he4_A Synzip6; heterodimeric 40.9 72 0.0025 23.2 5.8 25 121-145 22-46 (56)
237 4hpq_C ATG17, KLTH0D15642P; au 40.6 3.2E+02 0.011 28.0 22.1 27 183-209 364-390 (413)
238 1jnm_A Proto-oncogene C-JUN; B 40.0 30 0.001 25.9 3.9 28 73-100 22-49 (62)
239 1jnm_A Proto-oncogene C-JUN; B 39.8 63 0.0022 24.1 5.7 10 119-128 25-34 (62)
240 4dzn_A Coiled-coil peptide CC- 39.7 33 0.0011 22.6 3.5 21 46-66 3-23 (33)
241 1zxa_A CGMP-dependent protein 39.5 41 0.0014 26.2 4.7 43 123-165 11-53 (67)
242 3tul_A Cell invasion protein S 39.4 2.1E+02 0.0071 25.6 14.4 20 45-64 20-39 (158)
243 4e61_A Protein BIM1; EB1-like 39.2 1.7E+02 0.0059 24.6 9.4 37 116-152 18-54 (106)
244 2xzr_A Immunoglobulin-binding 39.0 1.7E+02 0.0058 24.4 16.8 20 80-99 6-25 (114)
245 3he4_A Synzip6; heterodimeric 38.6 85 0.0029 22.8 5.9 33 125-157 19-51 (56)
246 3lss_A Seryl-tRNA synthetase; 38.6 1.7E+02 0.0058 30.6 10.7 17 253-269 204-220 (484)
247 2xu6_A MDV1 coiled coil; prote 38.3 89 0.003 24.6 6.4 42 118-159 23-64 (72)
248 2z5i_A TM, general control pro 37.8 1.2E+02 0.0039 22.3 6.7 17 120-136 9-25 (52)
249 2yo3_A General control protein 37.6 77 0.0026 30.8 7.3 42 59-100 216-257 (268)
250 3viq_B Mating-type switching p 37.4 97 0.0033 25.1 6.8 25 121-145 6-30 (85)
251 1zme_C Proline utilization tra 36.6 31 0.0011 25.5 3.6 27 44-70 43-69 (70)
252 1fzc_C Fibrin; blood coagulati 36.5 17 0.0006 36.1 2.7 23 78-100 23-45 (319)
253 3d5a_X RF1, peptide chain rele 36.5 94 0.0032 31.3 8.1 12 55-66 6-17 (354)
254 3m9b_A Proteasome-associated A 36.0 34 0.0012 33.0 4.5 25 136-160 67-91 (251)
255 1j1e_C Troponin I, TNI; THIN f 35.4 1.2E+02 0.004 27.9 7.8 43 115-157 64-106 (180)
256 1gmj_A ATPase inhibitor; coile 35.4 1.6E+02 0.0055 23.8 7.7 45 136-180 36-80 (84)
257 1nlw_A MAD protein, MAX dimeri 34.0 75 0.0026 25.1 5.6 30 114-143 45-74 (80)
258 2p01_A Alpha-2-macroglobulin r 33.9 2.4E+02 0.0083 28.0 10.3 27 43-69 131-157 (323)
259 4fi5_A Nucleoprotein; structur 33.7 2.2E+02 0.0076 24.2 9.1 16 167-182 71-86 (113)
260 3u06_A Protein claret segregat 33.6 1.2E+02 0.0042 30.9 8.5 23 126-148 6-28 (412)
261 1f5n_A Interferon-induced guan 33.5 4.6E+02 0.016 27.8 17.5 39 138-176 488-526 (592)
262 2l5g_B Putative uncharacterize 33.3 84 0.0029 22.3 5.0 6 131-136 17-22 (42)
263 3bbp_D GRIP and coiled-coil do 33.3 75 0.0026 24.9 5.2 47 91-138 19-65 (71)
264 3kdq_A Uncharacterized conserv 32.7 2.6E+02 0.0089 24.7 10.6 88 48-136 14-104 (154)
265 4e61_A Protein BIM1; EB1-like 32.7 2.2E+02 0.0076 23.9 9.6 42 123-164 11-52 (106)
266 1u4q_A Spectrin alpha chain, b 32.6 3E+02 0.01 25.4 16.7 12 129-140 261-272 (322)
267 2dq3_A Seryl-tRNA synthetase; 32.4 59 0.002 33.2 5.9 15 253-267 168-182 (425)
268 2l5g_B Putative uncharacterize 32.4 1.1E+02 0.0038 21.7 5.5 9 133-141 12-20 (42)
269 1nkp_B MAX protein, MYC proto- 32.3 1.3E+02 0.0045 23.3 6.8 16 48-63 15-30 (83)
270 3plt_A Sphingolipid long chain 32.2 3.4E+02 0.011 25.8 14.8 64 79-143 61-124 (234)
271 1gu4_A CAAT/enhancer binding p 31.9 1.8E+02 0.006 23.1 7.4 33 113-145 33-65 (78)
272 3vem_A Helicase protein MOM1; 31.7 2E+02 0.0068 24.6 8.0 26 38-63 32-57 (115)
273 1x4t_A Hypothetical protein LO 31.4 1.6E+02 0.0054 24.3 7.1 19 86-104 31-49 (92)
274 4gkw_A Spindle assembly abnorm 31.1 2.7E+02 0.0093 24.4 17.5 23 47-69 13-35 (167)
275 3iox_A AGI/II, PA; alpha helix 31.0 4.9E+02 0.017 27.4 15.3 85 90-182 5-90 (497)
276 1pl5_A Regulatory protein SIR4 30.9 1.3E+02 0.0046 25.5 6.8 41 56-96 64-104 (142)
277 3ra3_B P2F; coiled coil domain 30.3 53 0.0018 20.9 3.2 18 48-65 10-27 (28)
278 3gp4_A Transcriptional regulat 30.0 2.6E+02 0.0089 23.8 9.6 10 123-132 88-97 (142)
279 1zbt_A RF-1, peptide chain rel 29.3 1.1E+02 0.0038 31.0 7.2 14 54-67 19-32 (371)
280 1cun_A Protein (alpha spectrin 29.3 2.8E+02 0.0096 24.0 17.9 25 121-145 144-168 (213)
281 4dk0_A Putative MACA; alpha-ha 29.1 64 0.0022 31.1 5.4 19 44-62 69-87 (369)
282 3s4r_A Vimentin; alpha-helix, 29.0 2.3E+02 0.0078 22.9 13.1 18 83-100 26-43 (93)
283 1nkp_A C-MYC, MYC proto-oncoge 29.0 2.2E+02 0.0075 22.7 8.1 30 113-142 49-78 (88)
284 3edu_A Beta-I spectrin, spectr 28.9 3E+02 0.01 24.3 11.7 49 44-93 80-128 (218)
285 1dh3_A Transcription factor CR 28.6 1.7E+02 0.0059 21.4 6.8 30 71-100 20-49 (55)
286 3twe_A Alpha4H; unknown functi 28.6 96 0.0033 19.5 4.1 21 118-138 3-23 (27)
287 1lrz_A FEMA, factor essential 28.6 83 0.0028 31.6 6.2 55 73-136 247-301 (426)
288 1gl2_D Syntaxin 8, vesicle tra 28.4 1.8E+02 0.0062 21.5 7.8 30 123-152 23-52 (65)
289 1nyh_A Regulatory protein SIR4 28.1 2.4E+02 0.0083 24.4 8.1 38 58-95 90-127 (166)
290 3t97_C Nuclear pore glycoprote 28.1 48 0.0016 25.5 3.3 12 118-129 14-25 (64)
291 4abx_A DNA repair protein RECN 27.3 3.2E+02 0.011 24.0 11.6 10 139-148 124-133 (175)
292 3jsv_C NF-kappa-B essential mo 27.3 2.6E+02 0.009 23.0 11.0 22 79-100 8-29 (94)
293 3fpp_A Macrolide-specific effl 27.0 60 0.0021 31.0 4.7 15 50-64 67-81 (341)
294 3vmx_A Voltage-gated hydrogen 26.9 1.8E+02 0.0063 21.1 7.1 37 123-159 4-40 (48)
295 1hlo_A Protein (transcription 26.8 1.2E+02 0.0043 23.4 5.7 13 50-62 27-39 (80)
296 1nlw_A MAD protein, MAX dimeri 26.6 1.5E+02 0.0051 23.3 6.2 15 48-62 14-28 (80)
297 3etw_A Adhesin A; antiparallel 26.6 3E+02 0.01 23.5 12.9 21 40-60 4-24 (119)
298 2lf0_A Uncharacterized protein 26.5 1.8E+02 0.0062 25.0 6.9 25 80-104 10-34 (123)
299 1lrz_A FEMA, factor essential 26.5 2.7E+02 0.0092 27.7 9.6 19 125-143 249-267 (426)
300 4b6x_A AVRRPS4, avirulence pro 25.9 2.6E+02 0.0089 22.5 9.2 24 113-136 66-89 (90)
301 3a2a_A Voltage-gated hydrogen 25.7 2E+02 0.0068 21.6 6.1 38 123-160 11-48 (58)
302 3uun_A Dystrophin; triple heli 25.3 2.4E+02 0.0083 21.9 13.2 58 46-103 3-66 (119)
303 2ou1_A Apolipoprotein A-II; hi 25.3 37 0.0013 26.8 2.2 25 336-360 41-65 (77)
304 3r6n_A Desmoplakin; spectrin r 25.1 5.7E+02 0.019 26.2 16.8 159 43-201 47-217 (450)
305 1buu_A Protein (mannose-bindin 25.0 53 0.0018 28.3 3.5 22 42-63 20-41 (168)
306 1uix_A RHO-associated kinase; 24.9 2.5E+02 0.0086 22.0 9.6 17 124-140 5-21 (71)
307 1ytz_I Troponin I; muscle, THI 24.7 2.7E+02 0.0093 25.5 8.3 43 121-163 60-102 (182)
308 1vcs_A Vesicle transport throu 24.6 2.8E+02 0.0097 22.5 8.3 16 113-128 42-57 (102)
309 1ytz_T Troponin T; muscle, THI 24.5 1.8E+02 0.0061 24.4 6.5 40 117-156 50-89 (107)
310 3t97_C Nuclear pore glycoprote 24.5 72 0.0025 24.5 3.7 40 125-164 14-53 (64)
311 2w6b_A RHO guanine nucleotide 24.4 2.2E+02 0.0077 21.3 6.7 35 118-152 12-46 (56)
312 2q6q_A Spindle POLE BODY compo 24.1 2.6E+02 0.0089 21.9 8.9 27 118-144 5-31 (74)
313 1j1d_B Troponin T, TNT; THIN f 24.0 2.4E+02 0.0082 23.6 7.2 38 118-155 51-88 (106)
314 1l4a_D S-SNAP25 fusion protein 23.8 2.5E+02 0.0084 22.3 7.1 35 123-157 44-78 (87)
315 1lq7_A Alpha3W; three helix bu 23.5 97 0.0033 23.2 4.1 22 82-103 27-48 (67)
316 2z5i_A TM, general control pro 23.3 2.2E+02 0.0075 20.7 7.0 23 113-135 9-31 (52)
317 2p22_C Protein SRN2; endosome, 23.1 4.3E+02 0.015 24.1 11.6 7 195-201 143-149 (192)
318 1s1c_X RHO-associated, coiled- 23.1 2.7E+02 0.0093 21.8 10.3 23 121-143 4-26 (71)
319 1deb_A APC protein, adenomatou 23.1 2.2E+02 0.0074 21.0 5.8 25 46-70 11-35 (54)
320 1yke_B RNA polymerase II holoe 23.0 3.9E+02 0.013 23.5 9.4 15 82-99 66-80 (151)
321 3viq_B Mating-type switching p 23.0 1.5E+02 0.0052 24.0 5.6 29 43-71 6-34 (85)
322 1sjj_A Actinin; 3-helix bundle 22.9 7.3E+02 0.025 26.7 14.3 33 149-181 448-480 (863)
323 2xu6_A MDV1 coiled coil; prote 22.8 2.8E+02 0.0096 21.8 9.2 46 130-175 21-66 (72)
324 3lay_A Zinc resistance-associa 22.8 4.2E+02 0.014 23.8 10.4 27 73-99 71-97 (175)
325 3sja_C Golgi to ER traffic pro 22.7 2.5E+02 0.0087 21.6 6.5 26 115-140 31-56 (65)
326 2d4y_A HAP1, flagellar HOOK-as 22.6 3.7E+02 0.013 27.2 9.9 54 129-182 95-150 (463)
327 4g2k_A General control protein 22.6 3.7E+02 0.013 23.1 9.7 22 78-99 33-54 (125)
328 3hd7_B Syntaxin-1A; membrane p 22.5 3.2E+02 0.011 22.4 11.9 58 125-182 16-73 (109)
329 3swy_A Cyclic nucleotide-gated 22.3 2.2E+02 0.0076 20.4 6.8 18 121-138 3-20 (46)
330 2ve7_A Kinetochore protein HEC 22.1 78 0.0027 31.1 4.5 22 139-160 187-208 (315)
331 2nps_D Syntaxin-6; vesicle fus 22.0 2.8E+02 0.0096 21.5 9.0 45 118-162 28-72 (82)
332 3n1e_A Vacuolar protein sortin 21.7 2.8E+02 0.0095 24.3 7.5 71 255-327 20-97 (141)
333 1s1c_X RHO-associated, coiled- 21.6 2.9E+02 0.01 21.6 8.9 9 174-182 41-49 (71)
334 1nkp_A C-MYC, MYC proto-oncoge 21.6 3.1E+02 0.01 21.8 7.8 17 48-64 19-35 (88)
335 1sfc_D Protein (SNAP-25B), pro 21.6 3E+02 0.01 21.7 9.1 27 127-153 47-73 (87)
336 3swy_A Cyclic nucleotide-gated 21.3 2.3E+02 0.008 20.3 5.7 9 92-100 10-18 (46)
337 3kqg_A Langerin, C-type lectin 21.2 1.2E+02 0.0043 25.9 5.2 13 121-133 4-16 (182)
338 4fye_A SIDF, inhibitor of grow 21.0 6.8E+02 0.023 25.6 13.3 52 91-150 505-557 (761)
339 1dh3_A Transcription factor CR 20.9 1.6E+02 0.0056 21.5 5.0 18 118-135 24-41 (55)
340 3l4q_C Phosphatidylinositol 3- 20.6 4.7E+02 0.016 23.6 15.5 53 117-169 97-149 (170)
341 1uix_A RHO-associated kinase; 20.5 3.1E+02 0.011 21.4 10.8 7 176-182 43-49 (71)
342 4fye_A SIDF, inhibitor of grow 20.4 3.4E+02 0.012 27.7 8.7 23 78-100 535-557 (761)
343 1sjj_A Actinin; 3-helix bundle 20.4 8.2E+02 0.028 26.3 13.7 25 154-178 574-598 (863)
344 3rmi_A Chorismate mutase prote 20.4 2.7E+02 0.0092 23.1 6.9 37 122-158 11-47 (114)
No 1
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=99.05 E-value=2.9e-10 Score=109.62 Aligned_cols=106 Identities=16% Similarity=0.247 Sum_probs=99.4
Q ss_pred chHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhc
Q 013531 254 PHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVA 333 (441)
Q Consensus 254 P~l~~~~~K~~pv~~~~w~~~~~~v~p~Ve~~ktk~~p~~ea~r~~~~phv~~vk~~v~Py~~e~ke~~~py~~qa~~~s 333 (441)
.+++.++.++.|++.+ ++.++..||+++++++.|+.+.+|+.+..|++.+++.+.||++++++.+.|++++++...
T Consensus 132 ~~~eel~~~L~p~~ee----lr~kl~~~veelk~~l~P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l 207 (243)
T 2a01_A 132 QKLHELQEKLSPLGEE----MRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKA 207 (243)
T ss_dssp HHHHHHCCSCCSSTHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh
Confidence 3677888899999888 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHhHHHhhcccHHHHHHHHHHHHHHHH
Q 013531 334 KPHVDNVRVALKPYTKKVVRAYGKFLKSAT 363 (441)
Q Consensus 334 kP~vdkv~~~~~Py~e~v~~~~k~~~~~a~ 363 (441)
.||.+.++..+.||++.++..+..+++..+
T Consensus 208 ~p~~e~lk~~l~p~~e~~~~~l~~~~e~~~ 237 (243)
T 2a01_A 208 KPALEDLRQGLLPVLESFKVSFLSALEEYT 237 (243)
T ss_dssp HHHHHHSSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998886654
No 2
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=98.76 E-value=2.8e-08 Score=97.63 Aligned_cols=58 Identities=22% Similarity=0.421 Sum_probs=22.6
Q ss_pred hhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhcCcchHhHHHhhcccHHHHHH
Q 013531 296 TKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVR 353 (441)
Q Consensus 296 ~r~~~~phv~~vk~~v~Py~~e~ke~~~py~~qa~~~skP~vdkv~~~~~Py~e~v~~ 353 (441)
+|..+.||++.+++.++.++++.+..+.||.++++.-..-+++.++..+.||++.++.
T Consensus 93 Lr~~L~p~~eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~~l~P~ae~~~~ 150 (273)
T 3s84_A 93 LQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQDTQE 150 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3333333333333333333333333333333333333333333444444444433333
No 3
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=98.75 E-value=5.5e-09 Score=99.07 Aligned_cols=101 Identities=14% Similarity=0.188 Sum_probs=76.4
Q ss_pred chHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhc
Q 013531 254 PHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVA 333 (441)
Q Consensus 254 P~l~~~~~K~~pv~~~~w~~~~~~v~p~Ve~~ktk~~p~~ea~r~~~~phv~~vk~~v~Py~~e~ke~~~py~~qa~~~s 333 (441)
.+++.++.++.|++.+ +++.+..+++++++++.|+.+.+|+.+..|++.+++.+.||+++++..+...+++.+..
T Consensus 109 ~~~e~lr~~L~Py~~e----l~~~~~~~~e~Lr~~L~p~~e~lr~kl~~~~e~lk~~l~P~~ee~~~kl~~~leeL~~~- 183 (216)
T 2lem_A 109 EDVELYRQKASPQGAE----LQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMRESLAQRLAELKSN- 183 (216)
T ss_dssp HHHHHHHHHTSCHHHH----HHHHHHCSCCSSCCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhCC-
Confidence 4677777888888877 77788888888888888888888888888888888888888888888888888888875
Q ss_pred CcchHhHHHhhcccHHHHHHHHHHHHH
Q 013531 334 KPHVDNVRVALKPYTKKVVRAYGKFLK 360 (441)
Q Consensus 334 kP~vdkv~~~~~Py~e~v~~~~k~~~~ 360 (441)
||++.+++.+.|+++.++..+.||++
T Consensus 184 -p~~~e~~~ki~~~~e~Lr~~l~P~~e 209 (216)
T 2lem_A 184 -PTLNEYHSSAKSHLKSLGEKARPALE 209 (216)
T ss_dssp -CCCCCCCCCSSSHHHHHHHTSCTTTH
T ss_pred -cchHHHHHHHHHHHHHHHHHhhhhHH
Confidence 76666666666666666665555543
No 4
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=98.73 E-value=2.5e-06 Score=83.78 Aligned_cols=47 Identities=9% Similarity=0.163 Sum_probs=17.9
Q ss_pred cchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhcCcchHhHHHhhcc
Q 013531 300 VTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKP 346 (441)
Q Consensus 300 ~~phv~~vk~~v~Py~~e~ke~~~py~~qa~~~skP~vdkv~~~~~P 346 (441)
+.+++..+++.++|++++.+..+.||.+.+++-....+|.++..+.|
T Consensus 163 l~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~ 209 (273)
T 3s84_A 163 MKKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAE 209 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33333333333444444444444444333333333333333333333
No 5
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=98.67 E-value=4.1e-08 Score=91.75 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=48.2
Q ss_pred chHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhc
Q 013531 254 PHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVA 333 (441)
Q Consensus 254 P~l~~~~~K~~pv~~~~w~~~~~~v~p~Ve~~ktk~~p~~ea~r~~~~phv~~vk~~v~Py~~e~ke~~~py~~qa~~~s 333 (441)
-.|+.++.++.|+..+ ++..+.+||++++.++.|+.+.+|+.+..+++.++..+.||+++++..+.+.+++++...
T Consensus 106 kdlEelr~kL~P~~eE----L~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~P~~eelk~~l~~~veel~~~L 181 (191)
T 1nfn_A 106 ADMEDVCGRLVQYRGE----VQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERL 181 (191)
T ss_dssp HHHHHHHHHHHHHHHH----HHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888877 888888888888888888888888888888888888888888877777777666555555
Q ss_pred CcchHhHH
Q 013531 334 KPHVDNVR 341 (441)
Q Consensus 334 kP~vdkv~ 341 (441)
.||++.++
T Consensus 182 ~P~~e~~r 189 (191)
T 1nfn_A 182 GPLVEQGR 189 (191)
T ss_dssp --------
T ss_pred HhHHHHHh
Confidence 55555544
No 6
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=98.64 E-value=3.2e-08 Score=95.34 Aligned_cols=105 Identities=14% Similarity=0.198 Sum_probs=68.7
Q ss_pred hHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhcC
Q 013531 255 HVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAK 334 (441)
Q Consensus 255 ~l~~~~~K~~pv~~~~w~~~~~~v~p~Ve~~ktk~~p~~ea~r~~~~phv~~vk~~v~Py~~e~ke~~~py~~qa~~~sk 334 (441)
+|+.++.++.|++.+ +++.+..|++++++++.|+.+.+|+.+..+|+.+++.+.||+++++..+...+++.+....
T Consensus 111 ~~eelr~~L~P~~ee----l~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l~P~~ee~r~kl~~~~~el~~~l~ 186 (243)
T 2a01_A 111 EMELYRQKVEPLRAE----LQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGG 186 (243)
T ss_dssp HHHHHHTTHHHHHHH----HHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcc
Confidence 566666667776666 6666666666666666666666666666666666666666666666666666666666555
Q ss_pred cc-----------hHhHHHhhcccHHHHHHHHHHHHHHHH
Q 013531 335 PH-----------VDNVRVALKPYTKKVVRAYGKFLKSAT 363 (441)
Q Consensus 335 P~-----------vdkv~~~~~Py~e~v~~~~k~~~~~a~ 363 (441)
|| ++.++..+.||++.++..|.++++...
T Consensus 187 p~~~e~~~kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~ 226 (243)
T 2a01_A 187 ARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFK 226 (243)
T ss_dssp HTTTSSSCCHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH
Confidence 55 666777777777777776666654433
No 7
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=98.55 E-value=6.7e-08 Score=90.28 Aligned_cols=112 Identities=6% Similarity=0.063 Sum_probs=67.8
Q ss_pred hcccccchHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHH
Q 013531 248 AGKWVQPHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYID 327 (441)
Q Consensus 248 ~~~w~~P~l~~~~~K~~pv~~~~w~~~~~~v~p~Ve~~ktk~~p~~ea~r~~~~phv~~vk~~v~Py~~e~ke~~~py~~ 327 (441)
...=+.|+.+.+..++.+.+.+ ++..+.-+++++++++.|+.+.+++.+.+|++.++..+.||+.++++.+..-.+
T Consensus 78 l~~qL~P~~~e~~~~l~~~~e~----lr~~l~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~e 153 (191)
T 1nfn_A 78 LEEQLTPVAEETRARLSKELQA----AQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDAD 153 (191)
T ss_dssp HTTC----------CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3445778877777887777777 777888899999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcchHhHHHhhcccHHHHHHHHHHHHHHHH
Q 013531 328 QVATVAKPHVDNVRVALKPYTKKVVRAYGKFLKSAT 363 (441)
Q Consensus 328 qa~~~skP~vdkv~~~~~Py~e~v~~~~k~~~~~a~ 363 (441)
+.+....||++.+++.+..+++.++..+.||++...
T Consensus 154 eLr~~l~P~~eelk~~l~~~veel~~~L~P~~e~~r 189 (191)
T 1nfn_A 154 DLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQGR 189 (191)
T ss_dssp HHHHHHHHHTC-------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHh
Confidence 999999999999999999999999999999877653
No 8
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=98.54 E-value=1.1e-07 Score=87.98 Aligned_cols=113 Identities=8% Similarity=0.138 Sum_probs=72.9
Q ss_pred chHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhc
Q 013531 254 PHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVA 333 (441)
Q Consensus 254 P~l~~~~~K~~pv~~~~w~~~~~~v~p~Ve~~ktk~~p~~ea~r~~~~phv~~vk~~v~Py~~e~ke~~~py~~qa~~~s 333 (441)
|+.+.+..++.+.... +++.+..++++++.++.|+....+..+..|++.++..+.||+.++++.+..-.++.+...
T Consensus 67 p~~~e~~~~l~~~~~~----Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L 142 (185)
T 3r2p_A 67 PVTQEFWDNLEKETEG----LRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKL 142 (185)
T ss_dssp SCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS
T ss_pred chHHHHHHHHHHHHHH----HHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444444444433 566666667777777777777777777777777777777777777777776667777777
Q ss_pred CcchHhHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 334 KPHVDNVRVALKPYTKKVVRAYGKFLKSATTYHHQVQASV 373 (441)
Q Consensus 334 kP~vdkv~~~~~Py~e~v~~~~k~~~~~a~~~H~q~Q~~v 373 (441)
.||++.+++.+..+++.++..+.|| |..|+.++...|
T Consensus 143 ~p~~e~lr~~l~~~~e~lk~~l~Py---~ee~k~kl~~~l 179 (185)
T 3r2p_A 143 SPLGEEMRDRARAHVDALRTHLAPY---SDELRQRLAARL 179 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHH
Confidence 7777777777777777777777777 334444444443
No 9
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=98.51 E-value=1.5e-07 Score=93.92 Aligned_cols=102 Identities=8% Similarity=0.106 Sum_probs=71.5
Q ss_pred hHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhHHHHHHHHh---------------hhhcchhHHhhhhhcchhH----
Q 013531 255 HVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEAT---------------KTAVTPHIIRVQEVVDPYF---- 315 (441)
Q Consensus 255 ~l~~~~~K~~pv~~~~w~~~~~~v~p~Ve~~ktk~~p~~ea~---------------r~~~~phv~~vk~~v~Py~---- 315 (441)
+++.++.++.|++.+ ++..+..||+++++.+.|+.+.. +..+.|+++.|++-+.||.
T Consensus 159 ~~eeLr~~L~py~ee----Lr~kl~~~veelr~~L~Py~e~~~~~~~~v~~~k~~~L~~ki~~~~e~Lr~~L~p~~~~~~ 234 (307)
T 2l7b_A 159 DADDLQKRLAVYQAG----AREGAERGLSAIRERLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRTR 234 (307)
T ss_dssp HHHHHHHHHHHHTSC----CSSHHHHHHHHHHHHCSSSCTTTTTHHHHHHHHHCCCCSSCSCCHHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345555666666666 66666666666666666655443 3344666666666655544
Q ss_pred ----------HHHhhhhhhHHHHHHhhcCcchHhHHHhhcccHHHHHHHHHHHHH
Q 013531 316 ----------QEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKFLK 360 (441)
Q Consensus 316 ----------~e~ke~~~py~~qa~~~skP~vdkv~~~~~Py~e~v~~~~k~~~~ 360 (441)
++++..++--.++++....|+++.++..+.||++.++..|.++++
T Consensus 235 ~~l~~l~~q~ee~~~ql~~~aeel~~kl~~~~eeLr~~l~P~~e~lk~~l~~l~E 289 (307)
T 2l7b_A 235 DRLDEVKEQVAEVRAKLEEQAQQIRLQAEAAQARLKSRFEPLAEDMQRQWAGQVE 289 (307)
T ss_dssp CSSCCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 667788888888888888889999999999998888888877653
No 10
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=98.44 E-value=1.9e-07 Score=86.40 Aligned_cols=86 Identities=23% Similarity=0.344 Sum_probs=39.8
Q ss_pred hhcccchhHHHhhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhcCcchHhHHHhhcccHHHHHH
Q 013531 274 FTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVR 353 (441)
Q Consensus 274 ~~~~v~p~Ve~~ktk~~p~~ea~r~~~~phv~~vk~~v~Py~~e~ke~~~py~~qa~~~skP~vdkv~~~~~Py~e~v~~ 353 (441)
++..+.||++.+++++-+-.+.+|..+.||+..+++.+...+++-+..+.||.++.+.....++|.+++.+.||++.++.
T Consensus 94 ~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~Py~ee~k~ 173 (185)
T 3r2p_A 94 VKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQ 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33333333333333333333333333333333333333333333333344444445555555555666666666666666
Q ss_pred HHHHHH
Q 013531 354 AYGKFL 359 (441)
Q Consensus 354 ~~k~~~ 359 (441)
++..-+
T Consensus 174 kl~~~l 179 (185)
T 3r2p_A 174 RLAARL 179 (185)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 11
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=98.33 E-value=3.2e-07 Score=86.87 Aligned_cols=110 Identities=6% Similarity=0.106 Sum_probs=57.6
Q ss_pred hhcccchhHHHhhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhcCcchHhHHHhhcccHHHHHH
Q 013531 274 FTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVR 353 (441)
Q Consensus 274 ~~~~v~p~Ve~~ktk~~p~~ea~r~~~~phv~~vk~~v~Py~~e~ke~~~py~~qa~~~skP~vdkv~~~~~Py~e~v~~ 353 (441)
+++.+..++++++.++.|+...+++.+..|++.++..+.||+.++++.+..-.++.+....||.+.++..+..+++.++.
T Consensus 81 lr~~l~kd~ee~r~~l~py~~el~~~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~kl~~~~e~lk~ 160 (216)
T 2lem_A 81 VRQEMNKDLEEVKQKVQPYLDEFQKKWKEDVELYRQKASPQGAELQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRT 160 (216)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSCCSCSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444455555555555555554444555555555555555555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhc
Q 013531 354 AYGKFLKSATTYHHQVQASVQEMLKKHELTSPLA 387 (441)
Q Consensus 354 ~~k~~~~~a~~~H~q~Q~~v~~~l~~~e~~~~~a 387 (441)
.+.|| +..|+.++...+.++=.. ++...+-
T Consensus 161 ~l~P~---~ee~~~kl~~~leeL~~~-p~~~e~~ 190 (216)
T 2lem_A 161 QLAPH---SEQMRESLAQRLAELKSN-PTLNEYH 190 (216)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHC-CCCCCCC
T ss_pred HhHhh---HHHHHHHHHHHHHHHhCC-cchHHHH
Confidence 66666 445556666666555444 5555443
No 12
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=98.32 E-value=1.8e-07 Score=85.69 Aligned_cols=91 Identities=11% Similarity=0.119 Sum_probs=72.3
Q ss_pred hHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhcC
Q 013531 255 HVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAK 334 (441)
Q Consensus 255 ~l~~~~~K~~pv~~~~w~~~~~~v~p~Ve~~ktk~~p~~ea~r~~~~phv~~vk~~v~Py~~e~ke~~~py~~qa~~~sk 334 (441)
+++.+..++.|+..+ ++..+.-.++.++.++.|..+.+|+.+.||+..++.++.||+.+++..+.||+++.++-..
T Consensus 74 ~~~~l~~~L~P~t~e----l~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~ 149 (165)
T 1gs9_A 74 YKSELEEQLTPVAEE----TRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLL 149 (165)
T ss_dssp HHHHHTTSCCCCCSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777766 5566666777788888888888888888888888888888888888888888888888888
Q ss_pred cchHhHHHhhcccHH
Q 013531 335 PHVDNVRVALKPYTK 349 (441)
Q Consensus 335 P~vdkv~~~~~Py~e 349 (441)
.+++.++..+.||++
T Consensus 150 ~~~eeLr~kL~p~~e 164 (165)
T 1gs9_A 150 RDADDLQKRLAVYQA 164 (165)
T ss_dssp HHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHhhhhcc
Confidence 888888888888764
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.25 E-value=0.00012 Score=70.72 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
...|+.+++.++..+..+++++..+..+...++..+++++..++.++......+..++..-..++
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~ 156 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIK 156 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444333333
No 14
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=98.17 E-value=2.3e-06 Score=85.40 Aligned_cols=102 Identities=10% Similarity=0.131 Sum_probs=66.4
Q ss_pred chHHHHHhhhhhhHHHHHHhhhcccchhHHHhhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhc
Q 013531 254 PHVETIKAKWIPAVKEQWVVFTTNVEPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVA 333 (441)
Q Consensus 254 P~l~~~~~K~~pv~~~~w~~~~~~v~p~Ve~~ktk~~p~~ea~r~~~~phv~~vk~~v~Py~~e~ke~~~py~~qa~~~s 333 (441)
+.|+.++.++.|++.+ +...+.-|++.++.++.|+.+..|+.+..+++.|+..+.||..+.++.+..-++..+...
T Consensus 114 ~dlEelR~~L~Py~~e----l~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py~eeLr~kl~~~veelr~~L 189 (307)
T 2l7b_A 114 ADMEDVCGRLVQYRGE----VQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERL 189 (307)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 6677777777777666 666666666666666666666666666666666666666666666666666666666666
Q ss_pred CcchHhHHHhh---------------cccHHHHHHHHHHHH
Q 013531 334 KPHVDNVRVAL---------------KPYTKKVVRAYGKFL 359 (441)
Q Consensus 334 kP~vdkv~~~~---------------~Py~e~v~~~~k~~~ 359 (441)
.||.+.++..+ .||++.++..+.++.
T Consensus 190 ~Py~e~~~~~~~~v~~~k~~~L~~ki~~~~e~Lr~~L~p~~ 230 (307)
T 2l7b_A 190 GPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMG 230 (307)
T ss_dssp SSSCTTTTTHHHHHHHHHCCCCSSCSCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 66666555544 677777777666653
No 15
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.03 E-value=0.0013 Score=60.03 Aligned_cols=50 Identities=20% Similarity=0.271 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
|+.++..|+..|+.+...+..-...+...+..+.+.+..+..+..++..+
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 53 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKAT 53 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333333334444444444444444444333
No 16
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.00 E-value=0.0011 Score=64.02 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013531 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKEEMMRAKFEAT 193 (441)
Q Consensus 123 ~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lkeei~k~k~E~~ 193 (441)
++.+.|.++++.++.++..++.+..++..++++++..++.++....+.+..+......+.+.+..+..+..
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~ 160 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQ 160 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888888888888777788888888888888888888888777777755555544433
No 17
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=97.76 E-value=2.5e-05 Score=71.44 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=49.0
Q ss_pred hHHHhhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHHHHHhhcCcchHhHHHhhcccHHHHHHHHHHH
Q 013531 281 HVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVALKPYTKKVVRAYGKF 358 (441)
Q Consensus 281 ~Ve~~ktk~~p~~ea~r~~~~phv~~vk~~v~Py~~e~ke~~~py~~qa~~~skP~vdkv~~~~~Py~e~v~~~~k~~ 358 (441)
+++.++.++.|+.+.+++.+...++.+++.+.|++++++..+.||.++.+....||++.++..+.||+++.+.....-
T Consensus 74 ~~~~l~~~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~ 151 (165)
T 1gs9_A 74 YKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRD 151 (165)
T ss_dssp HHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555566666666666666666666666666666666666666777777777766665554443
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.62 E-value=0.00049 Score=78.79 Aligned_cols=125 Identities=19% Similarity=0.257 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQ----DKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~----ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eV 125 (441)
|+.....|+++|.+++..|.+..++...+...+. .+++.+..|+.+++.|+. .++....+++++..|++++
T Consensus 919 l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~-----~~~e~~~~~~~v~~L~~e~ 993 (1080)
T 2dfs_A 919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM-----SEEEAKNATNRVLSLQEEI 993 (1080)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHTHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 4445567777777777777665555554443332 334555555555555542 2444456778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 126 e~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+.|++++.++.++...++.+...+. ++++.++..|++.+..++.++++++..+.
T Consensus 994 ~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 994 AKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877766655 46777888888888888888888886555
No 19
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.41 E-value=0.014 Score=54.45 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 013531 74 VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK- 152 (441)
Q Consensus 74 ~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkk- 152 (441)
+|...++.+.++...+..|..++.++..+. +.+...++..++.|++++..|+...+.+..++.+||....++|..
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~----~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKL----EHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 555566666666666666666666665443 223334556677777777777777777777777777777777665
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 153 ------ISDLSAKLEKLQKINDEQKSKIRK 176 (441)
Q Consensus 153 ------leELekklEeLek~~aEQk~qIee 176 (441)
+.+++.++...-..++-.+..+++
T Consensus 126 R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 126 RATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.21 E-value=0.0063 Score=63.93 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 74 VVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 74 ~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
++...+..+...+..+..++.+|...
T Consensus 464 ~i~~l~~~~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 464 EVQQLTNEQIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333333444444444444444433
No 21
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.19 E-value=0.049 Score=49.29 Aligned_cols=90 Identities=21% Similarity=0.263 Sum_probs=51.2
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHH
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~ 123 (441)
..+|...-.+....+++|.+++.+|+.-+..++.++..-..-+..-...+.+|..|+ .+...|+.|+...+.
T Consensus 27 E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~--------~kLKEAE~RAE~AER 98 (155)
T 2efr_A 27 KKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLS--------DKLKEAETRAEFAER 98 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 344444455555566666666666666666666666655555666666666666664 333445555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013531 124 QIDNLKKESEKQQKEKEA 141 (441)
Q Consensus 124 eVe~Lkkeie~~ek~~ee 141 (441)
.|..|++++++++.++..
T Consensus 99 sv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 99 SVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555544443
No 22
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.12 E-value=0.0012 Score=76.13 Aligned_cols=18 Identities=6% Similarity=0.222 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHhhHHH
Q 013531 46 ELDQLKSKIRSLESHIDE 63 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~ 63 (441)
++..++.++..|+..+..
T Consensus 858 El~~L~~eL~el~~~L~~ 875 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQK 875 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444333333
No 23
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.06 E-value=0.0011 Score=76.38 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=23.2
Q ss_pred CCchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHH
Q 013531 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (441)
Q Consensus 40 ~~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i 82 (441)
-..+..++..++.++..++..+.+++.++..-..++......+
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666665555555554444444333333
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.96 E-value=0.092 Score=45.68 Aligned_cols=60 Identities=25% Similarity=0.308 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelE 178 (441)
.+.+.....|.....+++..+..++.+..+.+....+|......++....+.+..|++++
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444443
No 25
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.96 E-value=0.13 Score=47.82 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=78.5
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHH
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~e 124 (441)
....+...++.+|+....+-...-++-. ..+|..|...++.+..|++.+..|..+. +.--.|....-.+...+
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrELE---~ELE~eL~~~Ek~~~~L~~~~~~L~~E~----e~~k~K~~~~~~e~~~~ 89 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSRELE---AELEAQLVQAEQRNRDLQADNQRLKYEV----EALKEKLEHQYAQSYKQ 89 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3334455555666555555433332211 2357778888888888888888886433 22223445555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~l 181 (441)
+..|++++..+......+..+..++|..-++++.............+.+++..-...
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 788888777777777777777777777666666665555555555555555444333
No 26
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.89 E-value=0.18 Score=45.60 Aligned_cols=120 Identities=19% Similarity=0.270 Sum_probs=68.3
Q ss_pred HHHHhhHHHHhhhhcchhHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHH
Q 013531 55 RSLESHIDEKTQELKGKDEVVAQKE-------KAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDN 127 (441)
Q Consensus 55 ~~Les~i~~~~~~i~~k~~~l~~ke-------~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~ 127 (441)
.+|+.++.+...+-+.|.+++...+ .....-+.+|.+|+.++...- ......+..-.....+-+.
T Consensus 3 ~~lE~qlkeaae~ad~KyeEvaR~E~dLEraEERae~aE~k~~eLEeeL~~v~--------~nlKsLE~seekasqrEd~ 74 (155)
T 2efr_A 3 KQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVT--------NNLKSLEAQAEKYSQKEDK 74 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhccchhhhhHHHHHHHH
Confidence 3444444444334444444433333 333333444555555544432 1122233334444455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 128 Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
++.+|..+..+..+.+.+...++..+..|+..+++++......+.....+...+.
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677777777777778888888888888888777777776666666655
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.86 E-value=0.074 Score=46.31 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=56.1
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHH
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~e 124 (441)
.++..+..+|..|+..+..-+...++ .=......+.++......|+++-..+ .++++......++-.+|+..
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~e---le~~~~~l~~Ek~~L~~qL~~E~~~l-----~e~EE~~~~L~~~k~eLe~~ 84 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKE---LEEKMVSLLQEKNDLQLQVQAEQDNL-----ADAEERCDQLIKNKIQLEAK 84 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555432222221 11122333444444444444433333 34455555555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
+..+...+++.+.....|.+.+..++..+.+|...+++++
T Consensus 85 l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 85 VKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666665554
No 28
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.79 E-value=0.031 Score=64.09 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKS 172 (441)
Q Consensus 111 ~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~ 172 (441)
+...++.+.+|+++++++.++.+.++.+...+.. +++.+++.|++....|+...++.+.
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666666666666555544442 3334444444444444444444333
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.52 E-value=0.025 Score=59.29 Aligned_cols=61 Identities=25% Similarity=0.350 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelE 178 (441)
...++.+...+++++++.+.+.+.++.+..+++.+.++.+..+.++.+.....+.++.+++
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444444333333333333333
No 30
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.47 E-value=0.51 Score=43.15 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
-+...+.+|+.++..|..+++........++.+...+..++..+++....++
T Consensus 87 q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 87 HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444566777777777777777777777666666666666666665555554
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.45 E-value=0.12 Score=43.37 Aligned_cols=95 Identities=21% Similarity=0.297 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHH
Q 013531 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (441)
Q Consensus 47 l~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe 126 (441)
.+.++.++..|.-..+.-.... .+.+..+.+.+..-..+..+|.|||++. .-++.+++
T Consensus 4 MdaIKkKm~~lk~e~e~a~dra-------e~~e~~~k~~e~~~~~~E~Ei~sL~kk~---------------~~lE~eld 61 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRA-------EQAEADKKAAEERSKQLEDDIVQLEKQL---------------RVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHH---------------HHHHHHHH
Confidence 3455666666555444432222 2344444444455555555555555222 22334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 127 ~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeL 163 (441)
.++..+......++.-+......|..+..|+.+++-|
T Consensus 62 ~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 62 QVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444555555555554443
No 32
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.36 E-value=0.71 Score=58.41 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=17.3
Q ss_pred HHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 63 EKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 63 ~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
+-..++++-..+|..++..+.++++....+-.+|..-
T Consensus 1931 et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A 1931 DTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555544444444433
No 33
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=96.23 E-value=0.23 Score=42.57 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK-------ISDLSAKLEKLQKINDEQKSKIRK 176 (441)
Q Consensus 114 a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkk-------leELekklEeLek~~aEQk~qIee 176 (441)
++...+.|++++..|+...+.+...+.+||....++|.. ++++++++...-..++-.+..+++
T Consensus 33 ~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 33 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555443 555555555544444444444443
No 34
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.15 E-value=0.18 Score=42.13 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhHH
Q 013531 48 DQLKSKIRSLESHID 62 (441)
Q Consensus 48 ~~l~~~i~~Les~i~ 62 (441)
+.++.++..|.-..+
T Consensus 5 d~iKkKm~~lk~e~e 19 (101)
T 3u59_A 5 EAIKKKMQMLKLDKE 19 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555444433
No 35
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.14 E-value=0.039 Score=47.96 Aligned_cols=84 Identities=15% Similarity=0.256 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNA----------AEQVDKAHARADELEKQIDNLKKESEKQQKEKEA 141 (441)
Q Consensus 72 ~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~----------~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~ee 141 (441)
.+.+..-...|.+....|.+|+.+|++|++...++. ..+...+++.+..|+.++..++.++..+..+...
T Consensus 28 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~ 107 (129)
T 3tnu_B 28 GDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQE 107 (129)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333433444455555555566666655543222110 1112233344444555555555555554444444
Q ss_pred HHHHHHHHHHHHHH
Q 013531 142 LEARAIEAEKKISD 155 (441)
Q Consensus 142 LEark~eLEkkleE 155 (441)
|-.-+-.|+.+++.
T Consensus 108 LlnvKl~Ld~EIat 121 (129)
T 3tnu_B 108 LMNTKLALDVEIAT 121 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 36
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.13 E-value=0.42 Score=43.73 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=30.6
Q ss_pred HHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 51 ~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+.+|.+|+.++.+....++.-.+.-...-+...|.++.+..++..+.-||
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq 54 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQ 54 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777666666666666666666666666665555
No 37
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.11 E-value=0.039 Score=48.12 Aligned_cols=97 Identities=21% Similarity=0.257 Sum_probs=33.6
Q ss_pred hHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhH----------HhhHHHHHHHHHHHHHHHHHHH
Q 013531 60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNA----------AEQVDKAHARADELEKQIDNLK 129 (441)
Q Consensus 60 ~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~----------~~~~~~a~~~~~eLe~eVe~Lk 129 (441)
++.++......-.+.+..-...|.+....|.+|+.+|+++.+...++. ..+...++..+..|+.++..++
T Consensus 18 K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 18 KTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343344344444444555566666666666666666653222110 1112233344444444455554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 130 KESEKQQKEKEALEARAIEAEKKISDL 156 (441)
Q Consensus 130 keie~~ek~~eeLEark~eLEkkleEL 156 (441)
.++..+..+...|-.-+-.|+.+++..
T Consensus 98 ~em~~ql~EYq~Ll~vKl~Ld~EIatY 124 (131)
T 3tnu_A 98 CEMEQQNQEYKILLDVKTRLEQEIATY 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333
No 38
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.11 Score=46.79 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=34.5
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
....+++...|..|++.+.. ....|..++..|.+|.+.+..+++|+.+||
T Consensus 60 vs~~~~~~~~I~~L~~El~~-------l~~ki~dLeeel~eK~K~~e~l~DEl~aLq 109 (152)
T 3a7p_A 60 VSHDDALLNTLAILQKELKS-------KEQEIRRLKEVIALKNKNTERLNAALISGT 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554 455555588888888899999999999998
No 39
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.74 E-value=0.41 Score=40.00 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIR 175 (441)
Q Consensus 114 a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIe 175 (441)
++.+...++.+|.+|.+-+..++.+.+.++....+....+.+.+....+.+..+..+..+|+
T Consensus 35 ~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 35 AEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444433333333333333333333333333333333333333333333333
No 40
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.63 E-value=0.21 Score=41.89 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=18.9
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 42 PLKIELDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 42 ~~~~el~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
++..+++.||.+|.+|++.....+.++..
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~ 30 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKR 30 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 35667888888888888777765444444
No 41
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.42 E-value=0.95 Score=57.30 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=14.8
Q ss_pred hhhhhccCCchHHHHHHHHHH
Q 013531 223 ETHWNAHGKPAMDVAIQKALE 243 (441)
Q Consensus 223 ~~~w~~hg~p~~~~~~~ka~~ 243 (441)
...|+..|=|.=+--++.+.=
T Consensus 2159 i~~W~~~GLP~D~lSiENaii 2179 (3245)
T 3vkg_A 2159 RLNWHANSLPSDELCIENAIM 2179 (3245)
T ss_dssp HHHHHHTTCCSSHHHHHHHHH
T ss_pred HHHHHhCCCCCCchhhhHHHH
Confidence 347999998876666666543
No 42
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=95.37 E-value=0.032 Score=44.38 Aligned_cols=47 Identities=32% Similarity=0.519 Sum_probs=32.1
Q ss_pred HHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 54 i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
|..|+.-+..+..+|..||..|..+|+.|.+++..|..|++++.-+|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666666666666666677777777777777777777777776665
No 43
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=95.23 E-value=0.6 Score=38.84 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIR 175 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIe 175 (441)
.++.+...++.+|..|++-+..++.+.+.++.+..++...+++.+......+..+..+..+|+
T Consensus 34 ~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 34 QAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443344444444444444444444443
No 44
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=94.90 E-value=0.04 Score=43.87 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=37.2
Q ss_pred hHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 60 ~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
-|.++...|..|+++|..+|..|.++++.|.++..+|..||
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788889999999999999999999999999999999888
No 45
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=94.35 E-value=2.6 Score=37.35 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 49 ~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
.|+.+...|.+....+...+.........++..+.+++....+|+..+..++
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443333233333344444444455555554444443
No 46
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.34 E-value=0.38 Score=42.50 Aligned_cols=30 Identities=37% Similarity=0.418 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARA 146 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark 146 (441)
++.++++++++|++++..+..++..|++..
T Consensus 104 k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 104 KAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555554443
No 47
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.56 E-value=0.98 Score=36.65 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 013531 82 IQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 82 i~ek~~~I~~l~~ei~sLq 100 (441)
+..++.+|...-..|+.||
T Consensus 8 leqLE~KIq~avdtI~lLq 26 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQ 26 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555
No 48
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=93.51 E-value=0.21 Score=39.47 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=40.3
Q ss_pred hhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHH
Q 013531 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA 108 (441)
Q Consensus 59 s~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~ 108 (441)
..|..+.+++.+||++|..++..|.-+++-...|-+||-||--++..+++
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~ 67 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQ 67 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHH
Confidence 34555566777888999999999999999999999999999766655543
No 49
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.92 Score=40.81 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=22.6
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
...+..|+.++.+|+.+|..++.+|++ |.+.++.....+.+|+-+...+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~e-------K~K~~e~l~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIAL-------KNKNTERLNAALISGTIENNVL 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554333333 4444444444444444444444
No 50
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=93.39 E-value=1.1 Score=47.55 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 120 eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELe 157 (441)
+|+.++..|+..++.+-..+..|++-..++-.++..|+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433333333333333
No 51
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=93.26 E-value=1.2 Score=35.59 Aligned_cols=48 Identities=23% Similarity=0.229 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekkl 160 (441)
.++..+.+.+.....+..++..+.+++..++......+.++.+.+.++
T Consensus 24 ~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 24 QAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444333333333333333
No 52
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.98 E-value=1.4 Score=39.74 Aligned_cols=17 Identities=41% Similarity=0.716 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013531 112 DKAHARADELEKQIDNL 128 (441)
Q Consensus 112 ~~a~~~~~eLe~eVe~L 128 (441)
..|+.....++.+++.|
T Consensus 75 ~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 75 TKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555555555555555
No 53
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.86 E-value=1.3 Score=46.86 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lk 129 (441)
++..|..|+.+++++.+.-++-+.....+-+.+++.-.....+.+.+ +..+...+.++.+...+++.--.++..|+
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNty----nE~S~ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTY----NRVSEDLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHH----HHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544444444444444444443333333333322 22333344444444444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013531 130 KESEKQQKEKEALEARAIE 148 (441)
Q Consensus 130 keie~~ek~~eeLEark~e 148 (441)
..|++|..++..||.....
T Consensus 138 snLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 54
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=92.72 E-value=3.9 Score=34.24 Aligned_cols=97 Identities=16% Similarity=0.269 Sum_probs=50.8
Q ss_pred HHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (441)
Q Consensus 54 i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie 133 (441)
|...-+.|-.++-++.--+.-+-..+..|....+.|..-+.-|+++. .+....++|.+....|+.+--+++.
T Consensus 8 ~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanT--------r~lQqh~aRlnsqQrQI~ENhkEMK 79 (114)
T 2xzr_A 8 IEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANT--------RTLQQHSARLDSQQRQINENHKEMK 79 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhH--------HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444444444444444332 3344566777777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 134 KQQKEKEALEARAIEAEKKISDLSA 158 (441)
Q Consensus 134 ~~ek~~eeLEark~eLEkkleELek 158 (441)
+.+.+.++|-++.--+|.++..+.+
T Consensus 80 q~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 80 QIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666666665556655554443
No 55
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.70 E-value=2 Score=37.90 Aligned_cols=50 Identities=32% Similarity=0.355 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKI 166 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~ 166 (441)
+...|+.+++.+.+++.++..++..+.-+..++.+++.++..++..|+..
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333444444444444333333
No 56
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.64 E-value=0.52 Score=41.68 Aligned_cols=17 Identities=41% Similarity=0.716 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013531 112 DKAHARADELEKQIDNL 128 (441)
Q Consensus 112 ~~a~~~~~eLe~eVe~L 128 (441)
..|+.....++.+++.|
T Consensus 63 ~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 63 TKAEEEADKLNKEVEDL 79 (135)
T ss_dssp HHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555555
No 57
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=92.45 E-value=2.2 Score=35.34 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 013531 78 KEKAIQDKSERIVSLQKELSSLQK 101 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sLq~ 101 (441)
+...+.+....|..+...+.-|.+
T Consensus 22 L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 22 ITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444455556666666666644
No 58
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.36 E-value=1.7 Score=37.58 Aligned_cols=69 Identities=16% Similarity=0.282 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 111 ~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+..+...+.+++..|+.|+-+++.+......||....+++.. ....+.+++..+...+..+.++...+.
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~---~~~~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR---GELALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344555677777777777777777777777777777666653 223334444444444444444444443
No 59
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.18 E-value=4.2 Score=36.15 Aligned_cols=24 Identities=21% Similarity=0.280 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKE 140 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~e 140 (441)
++..|+.++...+...++...+.+
T Consensus 53 r~~~lE~qLkeak~~aeeadrKye 76 (147)
T 2b9c_A 53 KMEIQEIQLKEAKHIAEDADRKYE 76 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444444444444444443333333
No 60
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.09 E-value=6.5 Score=35.37 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~e 136 (441)
...++-.+.+.+...+..+++++-
T Consensus 69 ~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 69 KENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666666665
No 61
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.86 E-value=1.5 Score=37.98 Aligned_cols=69 Identities=19% Similarity=0.310 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 111 ~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+..+...+.+|+..|+.|+-+++.+......|+....+++.. ....+.+++..+...+..+.++...+.
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~---~~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR---YCMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777777777777777777777766653 223334444444444444444444443
No 62
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.69 E-value=1.3 Score=37.83 Aligned_cols=15 Identities=20% Similarity=0.607 Sum_probs=8.4
Q ss_pred HhHHHHHHHHHHHHh
Q 013531 45 IELDQLKSKIRSLES 59 (441)
Q Consensus 45 ~el~~l~~~i~~Les 59 (441)
.+++.|+.++...|.
T Consensus 24 ~ei~~L~~~L~~AEe 38 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEE 38 (110)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466666666655433
No 63
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=91.59 E-value=7 Score=34.72 Aligned_cols=51 Identities=18% Similarity=0.385 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 114 a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
|.-+..+..-.+.-+..+++..+.+.+..+++..+++..+......+..|+
T Consensus 71 adrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 71 ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333444444444444444554444444444444444444444444444443
No 64
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.42 E-value=6.1 Score=33.72 Aligned_cols=94 Identities=19% Similarity=0.275 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHH
Q 013531 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNL 128 (441)
Q Consensus 49 ~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~L 128 (441)
.|+.+...|...+++... ..+..-.+-++.|.+||.+|+.|+.... .-..++.+|+-.-|.|
T Consensus 7 dL~~~~~~L~~E~e~~k~----------K~~~~~~e~~~~~~~Lq~El~~lr~~~~--------~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKE----------KLEHQYAQSYKQVSVLEDDLSQTRAIKE--------QLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhchHH
Confidence 355555555555544311 1233445556788888888888873321 2233566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 129 KKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (441)
Q Consensus 129 kkeie~~ek~~eeLEark~eLEkkleELekkl 160 (441)
+..-+....-+++++++.+.+=.+-.=|+..+
T Consensus 69 ER~~R~t~~SLeD~E~k~n~aiErnalLE~El 100 (111)
T 2v66_B 69 ERAKRATIVSLEDFEQRLNQAIERNAFLESEL 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665555433333344433
No 65
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.36 E-value=4.6 Score=34.48 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=11.6
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHh
Q 013531 42 PLKIELDQLKSKIRSLESHIDEKT 65 (441)
Q Consensus 42 ~~~~el~~l~~~i~~Les~i~~~~ 65 (441)
....+|..||..|..+...-..+.
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~ 40 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVE 40 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544433333
No 66
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.52 E-value=3 Score=33.86 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhhH
Q 013531 48 DQLKSKIRSLESHI 61 (441)
Q Consensus 48 ~~l~~~i~~Les~i 61 (441)
..||.+|..+...-
T Consensus 3 ~eLr~qi~~l~~e~ 16 (86)
T 3swk_A 3 RELRRQVDQLTNDK 16 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH
Confidence 34444444443333
No 67
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=90.36 E-value=0.83 Score=36.99 Aligned_cols=57 Identities=32% Similarity=0.357 Sum_probs=49.0
Q ss_pred CchhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (441)
Q Consensus 41 ~~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~ 97 (441)
..+-.|+..||.++..||+.-..-+..|++..++|..+...+..++..|.-|++++.
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 357788999999999999999999999999889999998888888888877777764
No 68
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=90.01 E-value=4.5 Score=41.27 Aligned_cols=10 Identities=30% Similarity=0.644 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 013531 121 LEKQIDNLKK 130 (441)
Q Consensus 121 Le~eVe~Lkk 130 (441)
|+.++..|++
T Consensus 118 Le~~i~~lk~ 127 (390)
T 1deq_A 118 LRSRIEILRR 127 (390)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 69
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.79 E-value=1.4 Score=38.99 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~e 136 (441)
+-.+.+.+...+..+++++-
T Consensus 61 ~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 61 LRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 70
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=89.48 E-value=4.7 Score=33.12 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSA 158 (441)
Q Consensus 122 e~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELek 158 (441)
+.++..|+.+++.+..+...++.+...+...+.++..
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777777777666666555554444443
No 71
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=89.35 E-value=2.1 Score=37.38 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhHHHHhhhhcchhHH
Q 013531 49 QLKSKIRSLESHIDEKTQELKGKDEV 74 (441)
Q Consensus 49 ~l~~~i~~Les~i~~~~~~i~~k~~~ 74 (441)
.|..+|+.|+-++..+++.+++-+..
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~ 35 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDES 35 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 46778888888888887777775543
No 72
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.09 E-value=7.9 Score=31.33 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 73 EVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 73 ~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+.+.++|.-|++.-..|.-|+-||.-|.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELK 33 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELK 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666664
No 73
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=88.91 E-value=7.5 Score=40.68 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 013531 168 DEQKSKIRKTERALK 182 (441)
Q Consensus 168 aEQk~qIeelEk~lk 182 (441)
..+..+|+.++..+.
T Consensus 178 ~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 178 DSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 74
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=88.79 E-value=5.1 Score=41.28 Aligned_cols=11 Identities=9% Similarity=0.205 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 013531 120 ELEKQIDNLKK 130 (441)
Q Consensus 120 eLe~eVe~Lkk 130 (441)
++.+++.+|+.
T Consensus 88 kml~~~~~~e~ 98 (409)
T 1m1j_C 88 KIIEEIIRYEN 98 (409)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 75
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=88.79 E-value=9 Score=31.61 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=5.3
Q ss_pred HHHHHHHhh
Q 013531 92 LQKELSSLQ 100 (441)
Q Consensus 92 l~~ei~sLq 100 (441)
+.+.+++||
T Consensus 2 lan~La~le 10 (101)
T 1d7m_A 2 MANRLAGLE 10 (101)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 455666665
No 76
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=88.20 E-value=6.3 Score=32.53 Aligned_cols=41 Identities=10% Similarity=0.196 Sum_probs=23.6
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHH
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek 85 (441)
.++.++-.++..|..++..+.+++......+...+..+.++
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666777777766666666444444455444433
No 77
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.04 E-value=8.6 Score=30.49 Aligned_cols=42 Identities=31% Similarity=0.283 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (441)
Q Consensus 127 ~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~a 168 (441)
.|+.+.+....+.+.++....+.+.....++..+..|++.+.
T Consensus 10 ~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq 51 (81)
T 1ic2_A 10 MLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLK 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 78
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.92 E-value=7.4 Score=31.48 Aligned_cols=63 Identities=13% Similarity=0.205 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~l 181 (441)
+.|..+++.++..+++...+.+.=-..+..+|..+..+.+.++++.-...+.+.+++.+...+
T Consensus 17 ~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 17 ARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777666666666777777777777777766666666666665544
No 79
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=87.76 E-value=11 Score=38.55 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lk 129 (441)
++.+|..|...+..+.+.-++-..++...-+.+.+.-+.+...++.+.. .+.+.+.++.+...++..==-.+..|+
T Consensus 65 ~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e----~s~eLe~~i~~lk~~V~~q~~~ir~Lq 140 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQ----INEDLRSRIEILRRKVIEQVQRINLLQ 140 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4445555555555554444444444444444444444444433333321 122333333333333332222444445
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013531 130 KESEKQQKEKEALEARA 146 (441)
Q Consensus 130 keie~~ek~~eeLEark 146 (441)
..|++|..++..||...
T Consensus 141 ~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 141 KNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555444443
No 80
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=87.44 E-value=5.1 Score=34.91 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 013531 79 EKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 79 e~~i~ek~~~I~~l~~ei~sL 99 (441)
+.-|.+.++.++.++..+..+
T Consensus 12 ~~KvAElekkv~~lek~lk~~ 32 (125)
T 2pms_C 12 QAKIAELENQVHRLEQELKEI 32 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444443
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.36 E-value=15 Score=37.43 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 154 SDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 154 eELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+....+++.+.++.+.++..++++...+.
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 438 DMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 33333444444444444444444444444
No 82
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=86.73 E-value=2.1 Score=34.22 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 140 eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
..++.+..+||.+++-++..+++|++.+..|+..|+.+.+.+.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888999999999999999999988877
No 83
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=86.45 E-value=12 Score=30.67 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 013531 81 AIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 81 ~i~ek~~~I~~l~~ei~sL 99 (441)
.|.++...+..+.++|..+
T Consensus 18 ~l~~L~~~~~~l~~~i~~l 36 (112)
T 1l8d_A 18 ERNEITQRIGELKNKIGDL 36 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444
No 84
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=86.42 E-value=17 Score=32.10 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 87 ERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEK 134 (441)
Q Consensus 87 ~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~ 134 (441)
+-+.+-+..++.||+.++..+.+ ++.|.++...++...++
T Consensus 39 kML~EEqgKVDQlqKRn~~HQKE--------i~~Lrae~~~~QRn~~K 78 (167)
T 4gkw_A 39 NMLREEQGKVDQLQKRNVAHQKE--------IGKLRAELGTAQRNLEK 78 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhccHHHHH--------HHHHHHHHHHHHHhHHH
Confidence 33445566777787777665544 44444444444444333
No 85
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=86.36 E-value=9 Score=31.56 Aligned_cols=26 Identities=8% Similarity=0.188 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhHHHHhhhhcchhH
Q 013531 48 DQLKSKIRSLESHIDEKTQELKGKDE 73 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~~~~~i~~k~~ 73 (441)
..|+.++..|.++|..++.++.+-+.
T Consensus 16 ~~l~~~~~~l~~q~~~l~~~~~e~~~ 41 (117)
T 2zqm_A 16 ESYQQQLQLVVQQKQKVQLELTEAKK 41 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333
No 86
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.32 E-value=30 Score=34.95 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013531 127 NLKKESEKQQKEKEALEARAIE 148 (441)
Q Consensus 127 ~Lkkeie~~ek~~eeLEark~e 148 (441)
.|++++++.++....++..++.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~ 422 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAAT 422 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhh
Confidence 3444444444444444444443
No 87
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.53 E-value=13 Score=31.10 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013531 157 SAKLEKLQKINDEQKSKIRK 176 (441)
Q Consensus 157 ekklEeLek~~aEQk~qIee 176 (441)
......++..+...+.+|.+
T Consensus 75 r~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 75 RKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444443
No 88
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=85.17 E-value=24 Score=36.91 Aligned_cols=40 Identities=15% Similarity=0.295 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 144 ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKE 183 (441)
Q Consensus 144 ark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lke 183 (441)
.+...+...+++.-..+..|+..+..|...|+.||.++..
T Consensus 118 ~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 118 RRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444443355666667777777777777777763
No 89
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=84.09 E-value=12 Score=32.21 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~e 136 (441)
+..|..+|..|+.+++.+.
T Consensus 42 v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 90
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=83.31 E-value=20 Score=37.46 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013531 147 IEAEKKISDLSAKLEKLQKINDE 169 (441)
Q Consensus 147 ~eLEkkleELekklEeLek~~aE 169 (441)
..|+..++.+..++..|+.....
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544443
No 91
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=83.28 E-value=10 Score=30.79 Aligned_cols=37 Identities=8% Similarity=0.204 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHH
Q 013531 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (441)
Q Consensus 49 ~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek 85 (441)
++-.+...|+.++..+.+++......+...+..+.++
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555544444444333333355444443
No 92
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=83.21 E-value=6.1 Score=32.67 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELe 157 (441)
++.+..|+.++..++.++..+..+...|-.-+-.++..++...
T Consensus 43 q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYr 85 (95)
T 3mov_A 43 RRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYR 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555444444544444443
No 93
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=82.57 E-value=17 Score=29.02 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekkl 160 (441)
..+..+..|+.++..++.++..+..+...|=.-+-.++.+++...+.+
T Consensus 30 ~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 30 NYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344556666677777777777777777777766666776666665544
No 94
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=82.53 E-value=30 Score=36.14 Aligned_cols=50 Identities=10% Similarity=0.267 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
++..|..|+..+.+..+.-+.-..++...-+.+.+.-+.+...++-+..+
T Consensus 63 v~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~ 112 (491)
T 1m1j_A 63 YSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHV 112 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 66777777777777777766666666666666666666666555555333
No 95
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=82.05 E-value=16 Score=29.59 Aligned_cols=33 Identities=6% Similarity=0.240 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHH
Q 013531 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK 78 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~k 78 (441)
++..++.++..+.++|..++.++.+-+..+.++
T Consensus 9 ~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 9 QFQQLQQQAQAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544444444333
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.20 E-value=35 Score=34.66 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 159 KLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 159 klEeLek~~aEQk~qIeelEk~lk 182 (441)
+.+.+++...+....+.++...++
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 450 ENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhHhcccHHH
Confidence 333333333344444444444333
No 97
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=81.13 E-value=28 Score=30.58 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=17.9
Q ss_pred HHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 56 ~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
.|.+....+.++..+-...+......-.++...+..|......|+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~ 70 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLE 70 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433322222333333344444444444444443
No 98
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=81.07 E-value=3.2 Score=37.06 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+++-|+..+..|..+++.....+..++++...++..+.+++.....|+..+.-..+....+.+.+.
T Consensus 60 ~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLe 125 (146)
T 2xnx_M 60 RANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLD 125 (146)
T ss_dssp THHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC------------
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456667777777777777777777777777777777777776666665444333333344444443
No 99
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=80.07 E-value=15 Score=29.61 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (441)
Q Consensus 116 ~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklE 161 (441)
..+..++.++..++.++..+..+...|=.-+..++.+++...+.++
T Consensus 35 ~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 35 RLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 4455556777777777777777777666666666666666655554
No 100
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=79.87 E-value=11 Score=30.19 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (441)
Q Consensus 140 eeLEark~eLEkkleELekklEeLek~~aEQk~qIee 176 (441)
++|..-...++..+++++.+..++++...-++....+
T Consensus 35 ~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 35 EDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 101
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=79.43 E-value=18 Score=34.01 Aligned_cols=49 Identities=20% Similarity=0.344 Sum_probs=22.3
Q ss_pred HHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 52 ~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
..+..-|.+|..++-++..-+.-|..-+..|...+-.|.+-+++|.+|+
T Consensus 77 ViL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~ 125 (242)
T 3c9i_A 77 VELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQ 125 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhh
Confidence 3344445555555544444333333344444444444444444444444
No 102
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=79.41 E-value=3.4 Score=35.69 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=35.7
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 42 ~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
.+..||.+|..+++.++.+.....+.=+. ..|.+..+.|..|..+|++|.
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaaa~~rgd~---------~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQADLSLVEAA---------DKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCTTTCT---------THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888888877555444 455666666677777777775
No 103
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=79.30 E-value=68 Score=33.87 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 013531 351 VVRAYGKFLKSA 362 (441)
Q Consensus 351 v~~~~k~~~~~a 362 (441)
.+.+|+.||..|
T Consensus 425 f~~Ay~eFf~~a 436 (526)
T 3iyk_A 425 LTEAYREFLNLA 436 (526)
T ss_pred HHHHHHHHHHHH
Confidence 445555555444
No 104
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=78.90 E-value=30 Score=29.54 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEARAIE----AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKEEMMRA 188 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEark~e----LEkkleELekklEeLek~~aEQk~qIeelEk~lkeei~k~ 188 (441)
..|..+...|++++.+...+...|+...++ -..++..|...++.-+....+.+....+.....+.+|.++
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~L 82 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVL 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433222 2233444555555555555555555555555555455544
No 105
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=78.90 E-value=31 Score=29.71 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 013531 114 AHARADELEKQIDNL 128 (441)
Q Consensus 114 a~~~~~eLe~eVe~L 128 (441)
+++++.--+.-|..|
T Consensus 44 ~eaQAaTCNqTV~tL 58 (121)
T 3mq7_A 44 VEAQAATANHTVMAL 58 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 106
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=78.45 E-value=12 Score=38.58 Aligned_cols=7 Identities=29% Similarity=0.392 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 013531 171 KSKIRKT 177 (441)
Q Consensus 171 k~qIeel 177 (441)
+.+|+++
T Consensus 118 ~~~i~~l 124 (409)
T 1m1j_C 118 SNKITQL 124 (409)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 107
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=78.37 E-value=2.4 Score=40.57 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei 96 (441)
+.|+++++.+|..|++++..+.+-++....+++.|...+..+.+|.+-|
T Consensus 2 e~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 2 ASLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4467777777777777777666666666666666666666666666655
No 108
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=77.65 E-value=23 Score=33.42 Aligned_cols=55 Identities=11% Similarity=0.212 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (441)
Q Consensus 124 eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelE 178 (441)
+|..++-++++.+.++..-+.....+|.++...+.++..|+..+...+.++...+
T Consensus 85 rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~e 139 (242)
T 3c9i_A 85 RIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAE 139 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccc
Confidence 3333333333444444443433334444444444444444333333333333333
No 109
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=77.60 E-value=11 Score=28.00 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEAL 142 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeL 142 (441)
..|..+|+.|-..++.+..++..+
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al 30 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 110
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=77.47 E-value=14 Score=34.29 Aligned_cols=7 Identities=14% Similarity=0.515 Sum_probs=3.1
Q ss_pred hhhhhhH
Q 013531 261 AKWIPAV 267 (441)
Q Consensus 261 ~K~~pv~ 267 (441)
..|+|.+
T Consensus 132 ~~Y~P~l 138 (190)
T 4emc_A 132 VIYAPVL 138 (190)
T ss_dssp EEEEECC
T ss_pred EEEeccc
Confidence 3444443
No 111
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=77.34 E-value=26 Score=28.01 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+-++|+.|-.+-.++-..+..|+--++++=.++++|..+.+.+.........-...++..+.
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~ 68 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNR 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666777777777777777777776666666666655555555555444
No 112
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=77.22 E-value=68 Score=32.77 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=67.4
Q ss_pred cchhHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhchhhHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 69 KGKDEVVAQKEKAIQD----KSERIVSLQKELSSLQKKETLNAAEQVD--KAHARADELEKQIDNLKKESEKQQKEKEAL 142 (441)
Q Consensus 69 ~~k~~~l~~ke~~i~e----k~~~I~~l~~ei~sLq~~~~~~~~~~~~--~a~~~~~eLe~eVe~Lkkeie~~ek~~eeL 142 (441)
..+...|.+.|.++.+ .+..|..+-+-+..|-+..+.....+.. +|++=+..++..-..|......++.++...
T Consensus 22 ~~~~~~l~~le~~~~~~~~gl~~~l~~ff~alq~la~~P~~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~ 101 (463)
T 2d4y_A 22 TTRYEQMSKIDNLLADKSSSLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSS 101 (463)
T ss_dssp HHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777765 4566667777777776655444444433 777777777777777777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013531 143 EARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 143 Eark~eLEkkleELekklEeL 163 (441)
-.+.+.+-+++++|+.++...
T Consensus 102 V~~iN~l~~qIa~LN~qI~~~ 122 (463)
T 2d4y_A 102 VAQINNYAKQIANLNDQISRM 122 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888655
No 113
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=77.11 E-value=33 Score=29.03 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 47 LDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 47 l~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
+.+|...+.+|+..+..+.+++..
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~ 26 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEA 26 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444444
No 114
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=77.01 E-value=16 Score=31.48 Aligned_cols=11 Identities=45% Similarity=0.603 Sum_probs=4.0
Q ss_pred HHHHHHHHHHh
Q 013531 89 IVSLQKELSSL 99 (441)
Q Consensus 89 I~~l~~ei~sL 99 (441)
|..|..+|..|
T Consensus 17 Ie~Lkreie~l 27 (120)
T 3i00_A 17 IERLYREISGL 27 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 115
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=76.42 E-value=44 Score=34.39 Aligned_cols=32 Identities=6% Similarity=0.002 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEA 149 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~eL 149 (441)
-.++-+++..++..+..+...+..|+......
T Consensus 86 Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~ 117 (411)
T 3ghg_C 86 SRKMLEEIMKYEASILTHDSSIRYLQEIYNSN 117 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33455555556666666665555555543333
No 116
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=76.23 E-value=21 Score=28.67 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEA 144 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEa 144 (441)
++.+|..++..++.+++....+=..|+.
T Consensus 57 ~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 57 QTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444443
No 117
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=75.89 E-value=7.3 Score=31.08 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEAR 145 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEar 145 (441)
|+.+|+.++.-++..|+++|.-+......
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~ 43 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333333333
No 118
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=75.82 E-value=76 Score=32.63 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=22.6
Q ss_pred HhhHHHHhhhhcchhHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhh
Q 013531 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSE------RIVSLQKELSSLQKK 102 (441)
Q Consensus 58 es~i~~~~~~i~~k~~~l~~ke~~i~ek~~------~I~~l~~ei~sLq~~ 102 (441)
..++..+..+.....+.+...+..+.+..+ ....|..++..|.+.
T Consensus 192 ~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~~~ 242 (517)
T 4ad8_A 192 VSRLERLQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLSNL 242 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH
Confidence 333333333333344445555555555555 556666666666543
No 119
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=75.57 E-value=14 Score=28.70 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=20.5
Q ss_pred hhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 59 s~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
++++++......-.+.+..-...|.+....|++|+.+|++|
T Consensus 35 ~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 35 SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444445444455555555555555555544
No 120
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=74.62 E-value=30 Score=27.34 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (441)
Q Consensus 111 ~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~ 167 (441)
...++.+..+|+.+|..|+..+++-..+- +....++..-.+.|..++.+|....
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q---~~~~~Elk~~~e~Ld~KI~eL~elr 62 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQ---DAFRSNLKTLLEILDGKIFELTELR 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555666667777777766665544332 3333444444555555555554433
No 121
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=74.57 E-value=89 Score=32.85 Aligned_cols=32 Identities=19% Similarity=-0.043 Sum_probs=19.8
Q ss_pred CCchhccchHHHHHHHHHHHHHHHHHHH-HHHH
Q 013531 382 LTSPLATKELEWFAASALLVLPVIILFR-IGSA 413 (441)
Q Consensus 382 ~~~~~at~el~wflasall~~P~~~~~~-~~s~ 413 (441)
+..+.+.--++=|+.|+++.+||-|+.+ ++.+
T Consensus 552 ~aaG~aASaVaAfaFS~~lGtPLGIlGiALImA 584 (602)
T 1cii_A 552 IIAGNAATALVALVFSILTGSALGIIGYGLLMA 584 (602)
T ss_dssp TBTTCBHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445555555556678889999766655 4433
No 122
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=74.41 E-value=38 Score=28.44 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 013531 80 KAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 80 ~~i~ek~~~I~~l~~ei~sLq 100 (441)
..-.+.+..+..|+.+|..++
T Consensus 22 q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 22 QAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555443
No 123
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=74.05 E-value=17 Score=29.12 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013531 133 EKQQKEKEALEARAIEAEKK 152 (441)
Q Consensus 133 e~~ek~~eeLEark~eLEkk 152 (441)
+.+..+|+.||.+...++.+
T Consensus 25 e~le~~Ie~LE~~i~~le~~ 44 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQ 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 124
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=73.19 E-value=7.4 Score=28.00 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 013531 83 QDKSERIVSLQKELSSLQKKE 103 (441)
Q Consensus 83 ~ek~~~I~~l~~ei~sLq~~~ 103 (441)
+.+++.|+.|.+||+.|.++.
T Consensus 27 qnlekiianlrdeiarlenev 47 (52)
T 3he5_B 27 QNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555443
No 125
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=72.91 E-value=3.9 Score=32.00 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=25.3
Q ss_pred HHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 63 EKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 63 ~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
++...|+.||.-|..+|..+.+++..|.+|.++|.-+|
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777777777777777777777666
No 126
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=72.67 E-value=25 Score=29.11 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013531 78 KEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sL 99 (441)
.|+.+.-+...|..|-.+|..+
T Consensus 14 aEeaL~~kq~~id~lke~~~q~ 35 (94)
T 3jsv_C 14 AEEALVAKQELIDKLKEEAEQH 35 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 127
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=72.44 E-value=45 Score=28.43 Aligned_cols=80 Identities=25% Similarity=0.352 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 109 EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKEEMMRA 188 (441)
Q Consensus 109 ~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lkeei~k~ 188 (441)
++..+..+-..+|+.. +....++-..++..|-......|..+.++............++=.++..-...+..++-++
T Consensus 20 ~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rL 96 (112)
T 1x79_B 20 DQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRL 96 (112)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555 5556666677777777777777777777777776666666666666666655555555555
Q ss_pred HHh
Q 013531 189 KFE 191 (441)
Q Consensus 189 k~E 191 (441)
+.+
T Consensus 97 Q~e 99 (112)
T 1x79_B 97 QKD 99 (112)
T ss_dssp ---
T ss_pred Hhh
Confidence 444
No 128
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=72.20 E-value=36 Score=27.28 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (441)
Q Consensus 111 ~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~ 167 (441)
...++.+..+|+.+|..|+..+++-..+- +....++..-.+.|..++.+|....
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q---~~~~~Elk~l~e~Ld~KI~eL~elR 68 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAER---ERARAEVGRAAQLLDVSLFELSELR 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34556666667777777766665544322 3333344444555555555554433
No 129
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=71.89 E-value=38 Score=27.93 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=33.4
Q ss_pred HHHHHHHHhhHHHHhh--hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 51 KSKIRSLESHIDEKTQ--ELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 51 ~~~i~~Les~i~~~~~--~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+.-++.+..+|..+.. .-.+|...|...+..+.|-...|..|.-|+.++.
T Consensus 25 ~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 25 RGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333444445554421 2356777888888888888888888888888774
No 130
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=71.52 E-value=50 Score=30.86 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALE 143 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLE 143 (441)
|+..+..|..++++..+.+.+.|
T Consensus 151 l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 151 LLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 131
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=71.30 E-value=3.3 Score=26.22 Aligned_cols=21 Identities=10% Similarity=0.354 Sum_probs=16.9
Q ss_pred hhcccHHHHHHHHHHHHHHHH
Q 013531 343 ALKPYTKKVVRAYGKFLKSAT 363 (441)
Q Consensus 343 ~~~Py~e~v~~~~k~~~~~a~ 363 (441)
.+.||+++++.++..++++.+
T Consensus 2 ~~~P~~e~ik~q~~~i~e~i~ 22 (26)
T 1oef_A 2 WFEPLVEDMQRQWAGLVEKVQ 22 (26)
T ss_dssp CCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 367999999999998887654
No 132
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=71.30 E-value=59 Score=32.36 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=34.6
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 013531 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVA-----------QKEKAIQDKSERIVSLQKELSSLQKKET 104 (441)
Q Consensus 42 ~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~-----------~ke~~i~ek~~~I~~l~~ei~sLq~~~~ 104 (441)
.+...|+.|+..|...+.+......+|+.=...+. +....+.-....|..|+.+|..+++...
T Consensus 120 ~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 120 TLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 35555666666666665555555554444333321 2233344444567777777777776655
No 133
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=71.03 E-value=42 Score=27.52 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 126 e~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeL 163 (441)
...+++..+...+.-..+.+...++.+..-....++.|
T Consensus 56 ~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 56 AQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444433333333333
No 134
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=70.82 E-value=6 Score=28.18 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 013531 74 VVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (441)
Q Consensus 74 ~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~ 103 (441)
++..+|....+++..+.+|++.|++||+++
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455566666777777777777777777554
No 135
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=70.79 E-value=7.3 Score=32.23 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 013531 120 ELEKQIDNLKKESEKQQKEKEALEARAI-EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKEEMMRAKFEATSRSKE 198 (441)
Q Consensus 120 eLe~eVe~Lkkeie~~ek~~eeLEark~-eLEkkleELekklEeLek~~aEQk~qIeelEk~lkeei~k~k~E~~~kAk~ 198 (441)
.|++.++.++.+.+.+..+......... +.|.++...-.+++.+.+.+-+.+..-..+...-+++|.+++.+...+..+
T Consensus 11 Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~~q 90 (92)
T 3vp9_A 11 KLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRDHQ 90 (92)
T ss_dssp ------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4556677778888887777777776665 677776666666666666666666666666666668888888876655444
Q ss_pred H
Q 013531 199 L 199 (441)
Q Consensus 199 l 199 (441)
+
T Consensus 91 ~ 91 (92)
T 3vp9_A 91 I 91 (92)
T ss_dssp -
T ss_pred C
Confidence 3
No 136
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=70.31 E-value=44 Score=27.52 Aligned_cols=50 Identities=32% Similarity=0.340 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
+.++.+|++.+++.-+.++.-.--.-+||++....|+-.+=++-++.+..
T Consensus 45 ~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkLaE~~ 94 (101)
T 1d7m_A 45 EKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAEAI 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence 34566666666665555554443444455555555544444444444433
No 137
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=70.06 E-value=41 Score=26.96 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 131 ESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (441)
Q Consensus 131 eie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelE 178 (441)
++.+.+..+..+++....+....+......+.|=+.+-.....|....
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333344444444444444333333333333444444444444444333
No 138
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=69.74 E-value=24 Score=29.55 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIE 148 (441)
Q Consensus 114 a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~e 148 (441)
..+.++.|..+|++|+.+.+.+..+++.||.+...
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44467777777777777777777777777766543
No 139
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=69.66 E-value=20 Score=25.44 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhhhhc
Q 013531 88 RIVSLQKELSSLQKKE 103 (441)
Q Consensus 88 ~I~~l~~ei~sLq~~~ 103 (441)
.++.|++|++||.+++
T Consensus 4 lvaqlenevaslenen 19 (49)
T 3he5_A 4 LVAQLENEVASLENEN 19 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccc
Confidence 3444455555554443
No 140
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=69.61 E-value=60 Score=28.74 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 123 ~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
..|..-+..|-+...++..=....-++..+...-.+.+..|.+...+--.+|++....++
T Consensus 82 ddVa~NqaDIakNqADIdNNinnIYELAQQQDQHSSDIKTLkKnS~~NTdnI~knka~~~ 141 (157)
T 2qih_A 82 QGVATNKADIAKNQADIANNIKNIYELAQQQDQHSSDIKTLAKVSAANTDRIAKNKAEAD 141 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHhHHHHHhhHHHHHHHHHHHHHhHHHHHHHHhcchhccchhhhhhHHHH
Confidence 333333344444444444333333445555556666777776666666666665555444
No 141
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.01 E-value=8.6 Score=39.25 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=36.2
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
.++++|+.+|..|+.++.+++.+|+.-..++...+..+.+.+..-..|.++|..|.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45666677777777777766666666666666666666666666666666666663
No 142
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=69.00 E-value=8 Score=38.63 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=19.8
Q ss_pred HHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 56 ~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
.|.++|..++..|...+..|..++..+...+.+|..|++.|..|+
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444445444444455555554444443
No 143
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=68.33 E-value=37 Score=34.73 Aligned_cols=28 Identities=18% Similarity=0.359 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 73 EVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 73 ~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+.|..+++.-.+....+.+|+.+...+.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~s 55 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVA 55 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455444444444444444444444
No 144
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=68.06 E-value=1.3e+02 Score=31.90 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013531 78 KEKAIQDKSERIVSLQKELSS 98 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~s 98 (441)
-++.+.+++..+..-+.-|.+
T Consensus 333 a~k~~a~~~er~~~t~~~~~~ 353 (551)
T 2b5u_A 333 ANEDVARNQERQAKAVQVYNS 353 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444443333333333333
No 145
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=67.95 E-value=56 Score=27.77 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=18.6
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 68 i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
|+.-...|...|+.+..+...|..|..+|+.+
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~ 57 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQH 57 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666666666554
No 146
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=66.73 E-value=52 Score=27.03 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=39.6
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (441)
Q Consensus 68 i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie 133 (441)
-.+|...|...+..|.|-+..|..|.-|+.++... .-..-++++..-..+++.|+.++.
T Consensus 33 geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~-------~R~~~~~klr~Yk~dL~~lk~elk 91 (102)
T 1vcs_A 33 PDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQ-------SRGMYSNRMRSYKQEMGKLETDFK 91 (102)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT-------THHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778889999999999999999999999888411 112334444444444444444443
No 147
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=65.88 E-value=51 Score=26.57 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 109 EQVDKAHARADELEKQIDNLKKESEKQ 135 (441)
Q Consensus 109 ~~~~~a~~~~~eLe~eVe~Lkkeie~~ 135 (441)
.+...|+++..+|..++..|+++++.+
T Consensus 45 skL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 45 SQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777777777776666664
No 148
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=65.41 E-value=3.2 Score=30.84 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=16.1
Q ss_pred CCchhHhHHHHHHHHHHHHhhHHHHhhhh
Q 013531 40 SSPLKIELDQLKSKIRSLESHIDEKTQEL 68 (441)
Q Consensus 40 ~~~~~~el~~l~~~i~~Les~i~~~~~~i 68 (441)
..+++.|++.|+.++..|...++++.+++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666655555554443
No 149
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=65.33 E-value=74 Score=33.38 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=13.6
Q ss_pred cCCchHHHHHHHHHHHHHHh--cccccchHH
Q 013531 229 HGKPAMDVAIQKALEKKAQA--GKWVQPHVE 257 (441)
Q Consensus 229 hg~p~~~~~~~ka~~~~~~~--~~w~~P~l~ 257 (441)
.|..+...+.+-+.+....+ ....+|+|.
T Consensus 217 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv 247 (501)
T 1wle_A 217 AGALLQHGLVNFTLNKLIHRGFTPMTVPDLL 247 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEeCCccc
Confidence 33444445555554444443 234555553
No 150
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=65.15 E-value=23 Score=25.19 Aligned_cols=29 Identities=38% Similarity=0.485 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 140 EALEARAIEAEKKISDLSAKLEKLQKIND 168 (441)
Q Consensus 140 eeLEark~eLEkkleELekklEeLek~~a 168 (441)
.+||.+..+++.+.++|+.++..|+..+.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444555555555555555555544433
No 151
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.12 E-value=10 Score=38.65 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 120 ELEKQIDNLKKESEKQQKEKEALEAR 145 (441)
Q Consensus 120 eLe~eVe~Lkkeie~~ek~~eeLEar 145 (441)
.|+.++..|+++..+++.+++.++.+
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~ 32 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELG 32 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333333333
No 152
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=64.67 E-value=28 Score=25.58 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (441)
Q Consensus 49 ~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~ 97 (441)
.+...+..++..++.+.+++.+-+..+.+....+..-...|..+.+.|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443344444333333333333333333333344444443333
No 153
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=64.23 E-value=52 Score=26.10 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhh
Q 013531 46 ELDQLKSKIRSLESHIDEKTQEL 68 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i 68 (441)
|++.++...+.|+..|.+.+...
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~ 24 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENF 24 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777765544
No 154
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=62.30 E-value=38 Score=27.35 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~e 136 (441)
++.+.+.+..+|..+++.++
T Consensus 46 kL~eae~rn~eL~~e~~~l~ 65 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQ 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 155
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=61.82 E-value=21 Score=26.66 Aligned_cols=28 Identities=32% Similarity=0.217 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 73 EVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 73 ~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+.+.+++..+..++....+|.++|..|+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 156
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=61.39 E-value=56 Score=34.31 Aligned_cols=18 Identities=0% Similarity=-0.058 Sum_probs=9.0
Q ss_pred ccchHHHHHhhhhhhHHH
Q 013531 252 VQPHVETIKAKWIPAVKE 269 (441)
Q Consensus 252 ~~P~l~~~~~K~~pv~~~ 269 (441)
+-|....+...++.++.+
T Consensus 214 l~p~GarL~~aL~~~~~d 231 (501)
T 1wle_A 214 LRGAGALLQHGLVNFTLN 231 (501)
T ss_dssp EETHHHHHHHHHHHHHHH
T ss_pred EcChHHHHHHHHHHHHHH
Confidence 345555555555555444
No 157
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=61.09 E-value=28 Score=24.98 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167 (441)
Q Consensus 128 Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~ 167 (441)
|++.|..+.++.-.||.+...+|+-+..+..++..|++..
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555566665555555544
No 158
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=60.83 E-value=1.7e+02 Score=30.83 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 87 ERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKI 166 (441)
Q Consensus 87 ~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~ 166 (441)
.+++.-|.|++..|+.+.-+. ..=++.+.+.+++-..++.+.+.++++.+... ..-+..++..+..++..++.
T Consensus 9 ~~la~yq~elarvqkana~ak----a~Ye~~~ae~~a~n~~i~aeNeaikkrNa~ak---a~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAK----AAYEAAVAANNAANAALTAENTAIKKRNADAK---ADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 445556666666654331110 01122244444444445555555554444332 22333455666666777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 013531 167 NDEQKSKIRKTERALK 182 (441)
Q Consensus 167 ~aEQk~qIeelEk~lk 182 (441)
.++++..+...+..++
T Consensus 82 ~AeY~~kl~aYe~~~~ 97 (497)
T 3iox_A 82 LADYPVKLKAYEDEQT 97 (497)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777776666666554
No 159
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=60.78 E-value=81 Score=27.11 Aligned_cols=35 Identities=9% Similarity=0.172 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 013531 154 SDLSAKLEKLQKINDEQKSKIRKTERALK--EEMMRA 188 (441)
Q Consensus 154 eELekklEeLek~~aEQk~qIeelEk~lk--eei~k~ 188 (441)
.+....+.++++.+.+++..|...++.+. +.|.++
T Consensus 71 ~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ik~l 107 (119)
T 3etw_A 71 SQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQAL 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555 445444
No 160
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=60.75 E-value=48 Score=24.51 Aligned_cols=12 Identities=0% Similarity=0.030 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 013531 85 KSERIVSLQKEL 96 (441)
Q Consensus 85 k~~~I~~l~~ei 96 (441)
++.+|..|++++
T Consensus 16 L~~kVdqLssdV 27 (52)
T 1jcd_A 16 ANAKADQASNDA 27 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 161
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=60.70 E-value=26 Score=31.19 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 013531 122 EKQIDNLKKESEK 134 (441)
Q Consensus 122 e~eVe~Lkkeie~ 134 (441)
+..+..|+..+..
T Consensus 86 ea~la~l~~~~~~ 98 (146)
T 2xnx_M 86 KLELDQLSSEKEQ 98 (146)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHH
Confidence 3333333333333
No 162
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=60.34 E-value=52 Score=34.03 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013531 165 KINDEQKSKIRKTERAL 181 (441)
Q Consensus 165 k~~aEQk~qIeelEk~l 181 (441)
+.+.+.+.++.+++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 83 KRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333444333
No 163
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=60.23 E-value=62 Score=25.57 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 149 AEKKISDLSAKLEKLQKINDEQKSKIRK 176 (441)
Q Consensus 149 LEkkleELekklEeLek~~aEQk~qIee 176 (441)
+..++.+++..-+.|.....+....+++
T Consensus 83 i~~~l~~l~~rw~~L~~~~~~R~~~Le~ 110 (119)
T 3uun_A 83 VQEQMNLLNSRWECLRVASMEKQSNLHR 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 164
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=59.27 E-value=53 Score=24.50 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklE 161 (441)
.++..+..|+.++..++.++..+..+...|=.-+..++.+++...+.++
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 3456777788888888888888888888777777777777666665543
No 165
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=59.23 E-value=35 Score=31.62 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELe 157 (441)
|.......|.+|..+...++.+++..+.+...+..+++.++
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444433333333333333333
No 166
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=59.09 E-value=65 Score=25.51 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 149 AEKKISDLSAKLEKLQKINDEQKSKIRK 176 (441)
Q Consensus 149 LEkkleELekklEeLek~~aEQk~qIee 176 (441)
+..++.+++..-+.|.....+....+++
T Consensus 83 i~~~l~~l~~rw~~L~~~~~~R~~~L~~ 110 (118)
T 3uul_A 83 IQEQMTLLNARWEALRVESMERQSRLHD 110 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 167
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=59.04 E-value=68 Score=25.67 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 013531 88 RIVSLQKELSSL 99 (441)
Q Consensus 88 ~I~~l~~ei~sL 99 (441)
.+...+.||++|
T Consensus 19 ~~~q~qaEl~sL 30 (78)
T 3iv1_A 19 EMDRAQAELNAL 30 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 344444444444
No 168
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=58.98 E-value=1.8e+02 Score=30.60 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 013531 82 IQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 82 i~ek~~~I~~l~~ei~sLq 100 (441)
+.+...+|...++.|+++|
T Consensus 358 lddArNEItsaeSaInslq 376 (602)
T 1cii_A 358 LLDARNKITSAESAVNSAR 376 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 169
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=58.60 E-value=37 Score=24.00 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 73 EVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 73 ~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
+++..+|..++-++++++.+.+.++.|
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555666666666665554
No 170
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=58.33 E-value=41 Score=26.56 Aligned_cols=56 Identities=29% Similarity=0.358 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013531 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (441)
Q Consensus 47 l~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~ 102 (441)
-++++.-+..|++.+.+.+++|..-.+.++-+-+..+.+...|=++--|=.-||.+
T Consensus 13 ~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~r 68 (75)
T 3a7o_A 13 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQK 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHH
Confidence 35566677777777777777777777777777777777777777776666666644
No 171
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=57.96 E-value=18 Score=28.25 Aligned_cols=13 Identities=15% Similarity=0.468 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 013531 82 IQDKSERIVSLQK 94 (441)
Q Consensus 82 i~ek~~~I~~l~~ 94 (441)
|.+++..+.+|+.
T Consensus 31 i~~LE~~v~~le~ 43 (70)
T 1gd2_E 31 LKALETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 172
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=57.90 E-value=44 Score=25.42 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHh
Q 013531 86 SERIVSLQKELSSL 99 (441)
Q Consensus 86 ~~~I~~l~~ei~sL 99 (441)
...+..+..++..+
T Consensus 26 ~~eve~~~~~lea~ 39 (65)
T 3m0d_C 26 NKEVEASHLALATS 39 (65)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 33334444444333
No 173
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=57.88 E-value=79 Score=26.09 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 150 EKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (441)
Q Consensus 150 EkkleELekklEeLek~~aEQk~qIeelE 178 (441)
+.++.+...+++.|....-..+.-+.+++
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555444444444444444443
No 174
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=57.87 E-value=47 Score=34.35 Aligned_cols=10 Identities=30% Similarity=0.338 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 013531 90 VSLQKELSSL 99 (441)
Q Consensus 90 ~~l~~ei~sL 99 (441)
.+++.+++.|
T Consensus 41 r~~~~~~~~l 50 (455)
T 2dq0_A 41 RTKLKEINRL 50 (455)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 175
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=57.62 E-value=92 Score=28.47 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 128 Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
.-...++.........+....++++++.++.++..|.
T Consensus 108 AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~ 144 (201)
T 3u0c_A 108 LTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELD 144 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333444444445555555556666666666655553
No 176
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=57.33 E-value=21 Score=34.08 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHhhh-hcchh
Q 013531 285 LKTKTIEACEATKT-AVTPH 303 (441)
Q Consensus 285 ~ktk~~p~~ea~r~-~~~ph 303 (441)
.+..|.++.+.+|. .+.|+
T Consensus 157 ~RRew~~Ifk~Lk~knlqpR 176 (233)
T 2yko_A 157 ARREWGPIFNILKEKNFQPR 176 (233)
T ss_dssp HHHHTHHHHHHHHHTTCCCE
T ss_pred HHHHHhHHHHHHHHcCCCcc
Confidence 34567777666543 34443
No 177
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=57.32 E-value=44 Score=26.76 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 139 KEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 139 ~eeLEark~eLEkkleELekklEeL 163 (441)
+.+++.+..+++.++..++..+++-
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s 39 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEA 39 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3333333333444444444333333
No 178
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=56.79 E-value=10 Score=40.41 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 149 AEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (441)
Q Consensus 149 LEkkleELekklEeLek~~aEQk~qIeel 177 (441)
++.++.+++..+..|..........-.++
T Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 438 (575)
T 2i1j_A 410 LEDEIRAKQEEVSRIQQEVELKDSETRRL 438 (575)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333333333
No 179
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=56.74 E-value=88 Score=26.27 Aligned_cols=41 Identities=5% Similarity=0.056 Sum_probs=23.6
Q ss_pred HHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 013531 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ 93 (441)
Q Consensus 53 ~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~ 93 (441)
++.+|...+..+..++..-...+......|.+..+.+..+.
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~ 42 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666655555555555555554444443
No 180
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=56.71 E-value=46 Score=31.95 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk 179 (441)
+..|+++.+.+..+++-|+-+++-...++.++..+++.|+....-.-.++..+|+
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEq 205 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQ 205 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555556666666666666666666666666666665555544444444443
No 181
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=56.63 E-value=1e+02 Score=26.95 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
.+|.+...+|..-|..++.+.-++|.+...-...+++|+.++.++.
T Consensus 61 ~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666666666665553
No 182
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=56.58 E-value=54 Score=33.00 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHH
Q 013531 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD 84 (441)
Q Consensus 47 l~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~e 84 (441)
...|+.+|..+++.|.++.+++..|.+++.+++..+..
T Consensus 304 ~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~ 341 (406)
T 4dyl_A 304 VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRN 341 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999988888877777777665543
No 183
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.54 E-value=61 Score=24.34 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=4.1
Q ss_pred HHHHHHHHh
Q 013531 51 KSKIRSLES 59 (441)
Q Consensus 51 ~~~i~~Les 59 (441)
+.++++.++
T Consensus 9 rNR~AA~rc 17 (63)
T 2wt7_A 9 RNKMAAAKC 17 (63)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 444444444
No 184
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.46 E-value=8.2 Score=28.63 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=25.2
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcchhH
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKGKDE 73 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~k~~ 73 (441)
..+.+.|+.+++.|+.++.++..++.+-..
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999998877766333
No 185
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=56.35 E-value=37 Score=36.16 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
.++..+..|+++....+.+-+.++.+..+++.....++.....-....+.|+....+....+..++...+
T Consensus 360 ~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~ 429 (575)
T 2i1j_A 360 EAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVE 429 (575)
T ss_dssp HHHHC-----------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433333334444454444444444444444443
No 186
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=56.34 E-value=20 Score=28.02 Aligned_cols=14 Identities=14% Similarity=0.465 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHh
Q 013531 86 SERIVSLQKELSSL 99 (441)
Q Consensus 86 ~~~I~~l~~ei~sL 99 (441)
+.-|.+|++.+..|
T Consensus 28 ~~~i~~LE~~v~~l 41 (70)
T 1gd2_E 28 EDHLKALETQVVTL 41 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 187
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=56.27 E-value=16 Score=35.38 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhh
Q 013531 87 ERIVSLQKELSSLQ 100 (441)
Q Consensus 87 ~~I~~l~~ei~sLq 100 (441)
..+.+|+.++.+|+
T Consensus 54 ~~l~eL~~ql~~L~ 67 (251)
T 3m9b_A 54 RDIHQLEARIDSLA 67 (251)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 34555666666665
No 188
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=55.75 E-value=63 Score=33.89 Aligned_cols=19 Identities=16% Similarity=-0.032 Sum_probs=8.2
Q ss_pred ccCCchHHHHHHHHHHHHH
Q 013531 228 AHGKPAMDVAIQKALEKKA 246 (441)
Q Consensus 228 ~hg~p~~~~~~~ka~~~~~ 246 (441)
-.|..+...+.+-+.+...
T Consensus 182 p~GarL~~aL~~~~~d~~~ 200 (485)
T 3qne_A 182 NYGVFLNQALINYGLSFLS 200 (485)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 189
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=55.67 E-value=35 Score=25.81 Aligned_cols=6 Identities=50% Similarity=0.689 Sum_probs=2.3
Q ss_pred HHHHHH
Q 013531 123 KQIDNL 128 (441)
Q Consensus 123 ~eVe~L 128 (441)
.++..|
T Consensus 51 ~E~~~L 56 (63)
T 1ci6_A 51 KEIQYL 56 (63)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 190
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=55.56 E-value=27 Score=35.74 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013531 160 LEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 160 lEeLek~~aEQk~qIeelEk~lk 182 (441)
...+.+.+.+.+.++.+++..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 73 GKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444
No 191
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=55.26 E-value=49 Score=23.39 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhhhchh
Q 013531 90 VSLQKELSSLQKKETL 105 (441)
Q Consensus 90 ~~l~~ei~sLq~~~~~ 105 (441)
+.+.+|++.|.++|-+
T Consensus 3 aalkselqalkkegfs 18 (48)
T 1g6u_A 3 AALKSELQALKKEGFS 18 (48)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4566677777666644
No 192
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=54.89 E-value=1.1e+02 Score=31.55 Aligned_cols=25 Identities=4% Similarity=0.234 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 75 VAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 75 l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
|..++..+.+.++.-.+-..-|..|
T Consensus 40 l~~L~~~l~~isn~Ts~~~~~v~~i 64 (411)
T 3ghg_C 40 LQSLEDILHQVENKTSEVKQLIKAI 64 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3334444444444333333333333
No 193
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=54.78 E-value=42 Score=29.14 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=15.2
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
..++.+|...+.+|+..+..+.+.+..
T Consensus 8 ~~~l~ql~~~~qql~~~~~~l~~~~~~ 34 (151)
T 2zdi_C 8 NKELEKLAYEYQVLQAQAQILAQNLEL 34 (151)
T ss_dssp TTHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665555444444
No 194
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=54.75 E-value=1.2e+02 Score=31.67 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013531 149 AEKKISDLSAKLEKLQK 165 (441)
Q Consensus 149 LEkkleELekklEeLek 165 (441)
|...++.+.++++.|+.
T Consensus 168 l~~~~~~~~~~i~~l~~ 184 (461)
T 3ghg_B 168 LRSILENLRSKIQKLES 184 (461)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444443
No 195
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.72 E-value=65 Score=24.16 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEA 144 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEa 144 (441)
.+.+|+.+++.|..+...+..++..|..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555444444444444443333
No 196
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=53.84 E-value=10 Score=23.88 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=13.0
Q ss_pred cchhHHHhhhHHHHHHHHhhhh
Q 013531 278 VEPHVQTLKTKTIEACEATKTA 299 (441)
Q Consensus 278 v~p~Ve~~ktk~~p~~ea~r~~ 299 (441)
+.|++|.+|.++..++++++..
T Consensus 3 ~~P~~e~ik~q~~~i~e~i~~a 24 (26)
T 1oef_A 3 FEPLVEDMQRQWAGLVEKVQAA 24 (26)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHHhh
Confidence 4566666666666666655443
No 197
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=53.78 E-value=70 Score=24.25 Aligned_cols=18 Identities=11% Similarity=0.267 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013531 79 EKAIQDKSERIVSLQKEL 96 (441)
Q Consensus 79 e~~i~ek~~~I~~l~~ei 96 (441)
|+.|.+++.++.++++=+
T Consensus 5 ~~~~~~le~kl~~lEnIv 22 (65)
T 3m0d_C 5 EKLLAELEGKLRVFENIV 22 (65)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 198
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=52.80 E-value=41 Score=23.86 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q 013531 87 ERIVSLQKELSSL 99 (441)
Q Consensus 87 ~~I~~l~~ei~sL 99 (441)
..+++|++|-.+|
T Consensus 10 nevaslenenetl 22 (49)
T 3he5_A 10 NEVASLENENETL 22 (49)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHH
Confidence 3333333333333
No 199
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=52.75 E-value=1.1e+02 Score=26.26 Aligned_cols=6 Identities=67% Similarity=0.960 Sum_probs=2.2
Q ss_pred HHHHHH
Q 013531 92 LQKELS 97 (441)
Q Consensus 92 l~~ei~ 97 (441)
|+.++.
T Consensus 30 Lq~qLT 35 (121)
T 3mq7_A 30 LQQELT 35 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 200
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=52.75 E-value=1.2e+02 Score=30.03 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=6.7
Q ss_pred HHHHHHhhhcccch
Q 013531 267 VKEQWVVFTTNVEP 280 (441)
Q Consensus 267 ~~~~w~~~~~~v~p 280 (441)
+.+.|+.+++.++-
T Consensus 316 a~~~W~~l~~~a~~ 329 (346)
T 2nrj_A 316 AKDSWKTLRTDAVT 329 (346)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH
Confidence 34445555554443
No 201
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=52.38 E-value=1e+02 Score=25.82 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIR 175 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIe 175 (441)
......=+..|...|..+...+..++...........+...+...+++..+.......
T Consensus 69 l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~~~~ 126 (150)
T 3ajw_A 69 WINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAAAL 126 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666667777777666666666666666666666666666655544443333
No 202
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=52.34 E-value=74 Score=27.56 Aligned_cols=28 Identities=4% Similarity=-0.038 Sum_probs=15.5
Q ss_pred HHHHHHHHhhHHHHhhhhcchhHHHHHH
Q 013531 51 KSKIRSLESHIDEKTQELKGKDEVVAQK 78 (441)
Q Consensus 51 ~~~i~~Les~i~~~~~~i~~k~~~l~~k 78 (441)
..++.+|...+..+..++..-...+.++
T Consensus 8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L 35 (151)
T 2zdi_C 8 NKELEKLAYEYQVLQAQAQILAQNLELL 35 (151)
T ss_dssp TTHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666555544444444
No 203
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=51.86 E-value=77 Score=24.87 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELe 157 (441)
.+..|+.++..++.++..+..+...|-.-+..++.+++...
T Consensus 13 ~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 13 LLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555444444444444443
No 204
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=51.77 E-value=43 Score=28.25 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 120 eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeL 163 (441)
+|.+.+.+|..-|..++.+.-++|.+...-+..+++|+.++.++
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 34555666666666666666666666666566666666666554
No 205
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=51.29 E-value=1.1e+02 Score=25.72 Aligned_cols=79 Identities=16% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhH---HHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHH
Q 013531 50 LKSKIRSLESHI---DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (441)
Q Consensus 50 l~~~i~~Les~i---~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe 126 (441)
+..+|+||..-. ...+..|...+..|..---.|.-....|..|.+.+.+|+ -|++..+...-.+..-++.+|.
T Consensus 18 ~~~~~sQLktTnDdvA~NTTdIaTnT~NIa~nT~NIATNTTNItNLtdsV~~L~----dDAed~~~~~~~~~~~~~~~~~ 93 (107)
T 2wps_A 18 IENEIARIKKLIEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSITTLM----KQIEDKIEEILSKIYHIENEIA 93 (107)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhhhhhhhhhhccchhhccchhhhccccchhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 013531 127 NLKKES 132 (441)
Q Consensus 127 ~Lkkei 132 (441)
.|++-+
T Consensus 94 ~~~~~~ 99 (107)
T 2wps_A 94 RIKKLI 99 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 206
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=51.29 E-value=38 Score=35.57 Aligned_cols=18 Identities=6% Similarity=-0.167 Sum_probs=10.4
Q ss_pred ccchHHHHHhhhhhhHHH
Q 013531 252 VQPHVETIKAKWIPAVKE 269 (441)
Q Consensus 252 ~~P~l~~~~~K~~pv~~~ 269 (441)
+-|....+...++.++.+
T Consensus 180 l~p~GarL~~aL~~~~~d 197 (485)
T 3qne_A 180 LRNYGVFLNQALINYGLS 197 (485)
T ss_dssp ECTHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHH
Confidence 456666666656555544
No 207
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=50.99 E-value=73 Score=23.61 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~e 136 (441)
..+|+.+++.|..+...+.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~ 42 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQ 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 208
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=50.60 E-value=2.1e+02 Score=28.78 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (441)
Q Consensus 114 a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek 165 (441)
-..+...|..++..|.....+++.++....+...+++++++.+.-.+-+|.+
T Consensus 203 ~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 203 IMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 3344445555555555555555555554444444555555555444444433
No 209
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=50.41 E-value=1e+02 Score=25.18 Aligned_cols=10 Identities=20% Similarity=-0.004 Sum_probs=1.2
Q ss_pred HHHHHHhhhh
Q 013531 93 QKELSSLQKK 102 (441)
Q Consensus 93 ~~ei~sLq~~ 102 (441)
++.|.+||+.
T Consensus 11 ~~~~~~Lq~~ 20 (95)
T 3mov_A 11 ENLYFQGQKE 20 (95)
T ss_dssp -------CCC
T ss_pred hhHHHHHHHH
Confidence 3455555533
No 210
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=50.24 E-value=1e+02 Score=25.53 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 013531 81 AIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 81 ~i~ek~~~I~~l~~ei~sLq 100 (441)
.-.+++..|..|..+|..|.
T Consensus 48 t~~eL~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555665554
No 211
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=50.23 E-value=73 Score=23.42 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 129 KKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (441)
Q Consensus 129 kkeie~~ek~~eeLEark~eLEkkleELekklE 161 (441)
+.++..+..+.+.|..-..+...++..|...++
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444333344434444444433
No 212
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=49.69 E-value=39 Score=28.48 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 120 eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeL 163 (441)
+|.+.+.+|..-|..++.+.-++|.+...-+..+++|+.++.++
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 45566666666666666666666666666666666666666555
No 213
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=48.82 E-value=60 Score=28.42 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELe 157 (441)
.+.+.+|-+.|..|+.+.=+++......+.+.+++..+++++.
T Consensus 64 ~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 64 QDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444445544555543
No 214
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=48.64 E-value=1e+02 Score=24.60 Aligned_cols=34 Identities=35% Similarity=0.357 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIE 148 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~e 148 (441)
-+|+++|..+-+-|+.+++....-+..++.+..+
T Consensus 36 I~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 36 IAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433333333
No 215
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=48.47 E-value=70 Score=25.93 Aligned_cols=38 Identities=32% Similarity=0.336 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 112 DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA 149 (441)
Q Consensus 112 ~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eL 149 (441)
.+...+..+++.++..|+.+-..+..+++.|..+...+
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444443333
No 216
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=48.13 E-value=1.1e+02 Score=24.70 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (441)
Q Consensus 127 ~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeel 177 (441)
.|-.++.++..++.++|+++..-|+++..-...+..|+.........+..+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL 73 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 444455555666666666666666555555555555555544444444433
No 217
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=48.10 E-value=52 Score=24.35 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELe 157 (441)
++..|..+-.-|++++++....+..||.+..++..-+..++
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 45555666666667777777777777766666555444443
No 218
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=47.78 E-value=17 Score=23.95 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=8.9
Q ss_pred hhHhHHHHHHHHHHHHhhHHH
Q 013531 43 LKIELDQLKSKIRSLESHIDE 63 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~ 63 (441)
+..|+..|+.+|+.|.=.|..
T Consensus 7 lkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 219
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=47.52 E-value=88 Score=23.54 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKES 132 (441)
Q Consensus 119 ~eLe~eVe~Lkkei 132 (441)
.+|+.+++.|+.+.
T Consensus 26 ~~le~~~~~L~~~N 39 (63)
T 1ci6_A 26 EALTGECKELEKKN 39 (63)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 220
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.43 E-value=31 Score=35.25 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 120 ELEKQIDNLKKESEKQQKEKEALEAR 145 (441)
Q Consensus 120 eLe~eVe~Lkkeie~~ek~~eeLEar 145 (441)
.|++++.+|++.++++..++..+..+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~ 32 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAE 32 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 221
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=46.98 E-value=1e+02 Score=24.21 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013531 116 ARADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 116 ~~~~eLe~eVe~Lkkeie~~e 136 (441)
.++.+++.+-..|+..+..++
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le 27 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEME 27 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 344444444444444444333
No 222
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=46.97 E-value=1.8e+02 Score=27.02 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (441)
Q Consensus 116 ~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~l 181 (441)
.++..|+++++.|+....++..+.+++-..+.+.|.. .+..--....+.+.+|.++++.+
T Consensus 139 ~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~------L~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 139 AKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETD------LYKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444455677777777777777777777666666653 11222233444455555555433
No 223
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=46.69 E-value=2.9e+02 Score=29.38 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 110 QVDKAHARADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 110 ~~~~a~~~~~eLe~eVe~Lkkeie~~e 136 (441)
.+....++...++.+...|+....+++
T Consensus 488 ~~~~~~~~~e~~~~~~~~l~~~~~~~~ 514 (592)
T 1f5n_A 488 EIEVERVKAESAQASAKMLHEMQRKNE 514 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555544433333
No 224
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=46.64 E-value=1.2e+02 Score=24.67 Aligned_cols=88 Identities=9% Similarity=0.152 Sum_probs=0.0
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhchhhHHhhHHHHHHHHH
Q 013531 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL--QKKETLNAAEQVDKAHARAD 119 (441)
Q Consensus 42 ~~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sL--q~~~~~~~~~~~~~a~~~~~ 119 (441)
....+...+-..|...=+.|..+.-+ +|...|..-+..+.|....|..|.-|+.++ . ...-..-++++.
T Consensus 5 ~YE~df~~~~~~i~~~l~~~~~~~ge--~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p-------~~~R~~~~~klr 75 (97)
T 3onj_A 5 SYESDFKTTLEQAKASLAEAPSQPLS--QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGD-------ASERATYKAKLR 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHH
Q ss_pred HHHHHHHH-HHHHHHHHHHH
Q 013531 120 ELEKQIDN-LKKESEKQQKE 138 (441)
Q Consensus 120 eLe~eVe~-Lkkeie~~ek~ 138 (441)
.-...++. |+.++.++..+
T Consensus 76 ~Yk~dl~~~lk~~lk~l~d~ 95 (97)
T 3onj_A 76 EWKKTIQSDIKRPLQSLVDS 95 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhhc
No 225
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=45.00 E-value=1.3e+02 Score=24.77 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKEALEA 144 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~eeLEa 144 (441)
+.++.+....++.|+.++-++..-+.+++.
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556666666677776666666666555543
No 226
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=44.91 E-value=27 Score=22.19 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=9.7
Q ss_pred hhHhHHHHHHHHHHHHhhHHH
Q 013531 43 LKIELDQLKSKIRSLESHIDE 63 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~ 63 (441)
+.-|-|.|..+|+.|..+|..
T Consensus 5 lefendaleqkiaalkqkias 25 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHH
Confidence 334444454555554444443
No 227
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=44.90 E-value=31 Score=23.32 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 77 QKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 77 ~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
++|+-++++-..+.+|++|++.|+
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445555555555666677776665
No 228
>3faj_A ORF131, putative uncharacterized protein; archaeal virus, extremophiles, bicaudavirus, structural PROT binding protein; 1.70A {Acidianus two-tailed virus}
Probab=44.76 E-value=25 Score=30.65 Aligned_cols=65 Identities=17% Similarity=0.014 Sum_probs=48.4
Q ss_pred hhHHHhhhHHHHHHHHhhhhcchhHHhh---hhhcchhHHHHhhhhhhHHHHHHhhcCcchHhHHHhh
Q 013531 280 PHVQTLKTKTIEACEATKTAVTPHIIRV---QEVVDPYFQEAKKFSKPYIDQVATVAKPHVDNVRVAL 344 (441)
Q Consensus 280 p~Ve~~ktk~~p~~ea~r~~~~phv~~v---k~~v~Py~~e~ke~~~py~~qa~~~skP~vdkv~~~~ 344 (441)
.+-|.++..+-.+++.+|++..|+=-+= ++.--|-..=++-|+.|-|||++.|...--.+|+.+-
T Consensus 66 sG~E~~keaIHeiIK~IreA~kPyr~~g~gf~~~pip~~via~v~s~~~~~~~~~~~~~~~~~~~~~~ 133 (151)
T 3faj_A 66 AGDERTKEAIHAIVKMISDAMKPYRNKGSGFQSQPIPGEVIAQVTSNPEYQQAKAFLASPATQVRNIE 133 (151)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHGGGC-------CEECCHHHHHHHHHCHHHHHHHHHHHSHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHHHHhcccccCCCCccCCCCcHHHHHHHhcChHHHHHHHHhcCcHHHhhhhH
Confidence 4556778888889999999999977644 3445566667999999999999999877777776653
No 229
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=44.57 E-value=1.9e+02 Score=26.52 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 119 ~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
.+|.+.+.+|..-|..++.+.-+++.+...-...+++|+.++.+|.
T Consensus 61 ~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 3455666666666666666666666666555555666666665553
No 230
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=44.42 E-value=2.2e+02 Score=27.25 Aligned_cols=13 Identities=8% Similarity=0.118 Sum_probs=6.2
Q ss_pred HHhhHHHHhhhhc
Q 013531 57 LESHIDEKTQELK 69 (441)
Q Consensus 57 Les~i~~~~~~i~ 69 (441)
.|+.|-...+.|.
T Consensus 80 FeAsLPiIne~i~ 92 (242)
T 3uux_B 80 FKSYLPIAELAIE 92 (242)
T ss_dssp HHHHHHHHGGGGC
T ss_pred cccccHHHHHHHH
Confidence 3444444444444
No 231
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=42.38 E-value=1.1e+02 Score=23.29 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=27.2
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL 105 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~ 105 (441)
--.|.=+++.-+..-|++|..+ =+.-...+..+.-||++|.+||.+++.
T Consensus 11 t~qeylevK~ALaaSeAkiQQL--------------mkVN~~ls~Elr~mQ~~lq~LQsen~~ 59 (63)
T 2w6a_A 11 TLQEYLELKKALATSEAKVQQL--------------MKVNSSLSDELRKLQREIHKLQAENLQ 59 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHH--------------HHHhHhhhHHHHHHHHHHHHHHhhhhh
Confidence 3455555666666666666554 233334455555566666666655443
No 232
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=42.23 E-value=1.4e+02 Score=31.30 Aligned_cols=27 Identities=7% Similarity=0.006 Sum_probs=10.9
Q ss_pred CCchHHHHHHHHHHHHHHh--cccccchH
Q 013531 230 GKPAMDVAIQKALEKKAQA--GKWVQPHV 256 (441)
Q Consensus 230 g~p~~~~~~~ka~~~~~~~--~~w~~P~l 256 (441)
|..+...+.+=+.+....+ ....+|+|
T Consensus 207 GarL~~aL~~f~~d~~~~~Gy~eV~~P~l 235 (484)
T 3lss_A 207 LVQLQVALVSYSLDFLVKRGYTPFYPPFF 235 (484)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEECCSE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEecCcc
Confidence 4444444444444433332 23344544
No 233
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.14 E-value=1.5e+02 Score=24.68 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 111 VDKAHARADELEKQIDNLKKESEKQQKEKE 140 (441)
Q Consensus 111 ~~~a~~~~~eLe~eVe~Lkkeie~~ek~~e 140 (441)
..+...++..|+.+.+.|+++++.++-+++
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444443
No 234
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=41.76 E-value=69 Score=25.05 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEARA 146 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark 146 (441)
+|-.-+..|..++..|+.+++.+..+...|+.+.
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555555555544444443
No 235
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=41.64 E-value=1.4e+02 Score=24.31 Aligned_cols=49 Identities=18% Similarity=0.392 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 50 l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
....|.+|+.-+...+.- .-....+..++.+++.+..|.+|...|...+
T Consensus 15 ~~~ql~~l~~~~~~~~~~--~~~~~~~El~~~l~el~e~l~DL~~SI~i~e 63 (95)
T 2c5k_T 15 TKEQLNRINNYITRHNTA--GDDDQEEEIQDILKDVEETIVDLDRSIIVMK 63 (95)
T ss_dssp HHHHHHHHHHHHHHTCCC----CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666543221 1135556677777777777777777777765
No 236
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=40.90 E-value=72 Score=23.16 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEAR 145 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEar 145 (441)
|+.-+..|+.+-..+++++..||..
T Consensus 22 lenivarlendnanlekdianlekd 46 (56)
T 3he4_A 22 LENIVARLENDNANLEKDIANLEKD 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHH
Confidence 4444444444444444444433333
No 237
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=40.60 E-value=3.2e+02 Score=28.00 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhhhhhhHHHhhhccCCh
Q 013531 183 EEMMRAKFEATSRSKELTEVHSAWLPP 209 (441)
Q Consensus 183 eei~k~k~E~~~kAk~l~e~h~~wlpp 209 (441)
+++.++..+.......-...||..||.
T Consensus 364 ~~L~~l~e~d~~~Re~F~~~~G~yLP~ 390 (413)
T 4hpq_C 364 TQLEQINTADLRERQMFLLENGNYLPE 390 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCh
Confidence 455555555555566677789999994
No 238
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=39.96 E-value=30 Score=25.95 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 73 EVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 73 ~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+.+.+++..+.+++....+|..+|..|+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443
No 239
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=39.81 E-value=63 Score=24.08 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 013531 119 DELEKQIDNL 128 (441)
Q Consensus 119 ~eLe~eVe~L 128 (441)
.+|+.+++.|
T Consensus 25 ~~Le~~v~~L 34 (62)
T 1jnm_A 25 ARLEEKVKTL 34 (62)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 240
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=39.73 E-value=33 Score=22.56 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHhhHHHHhh
Q 013531 46 ELDQLKSKIRSLESHIDEKTQ 66 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~ 66 (441)
|+..|+.+|+.|...|..+.=
T Consensus 3 eiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666555555433
No 241
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=39.49 E-value=41 Score=26.17 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (441)
Q Consensus 123 ~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek 165 (441)
..++++.+.+..-..++.+||...++.+..+.+|+..++....
T Consensus 11 ~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 11 ELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666676666666666666666666555543
No 242
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=39.38 E-value=2.1e+02 Score=25.56 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHHhhHHHH
Q 013531 45 IELDQLKSKIRSLESHIDEK 64 (441)
Q Consensus 45 ~el~~l~~~i~~Les~i~~~ 64 (441)
.-+++|+.+|..+.+.|...
T Consensus 20 ~Sl~qL~nrla~~~am~~sq 39 (158)
T 3tul_A 20 VSLSQLESRLAVWQAMIESQ 39 (158)
T ss_dssp HTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34677777777777766654
No 243
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=39.22 E-value=1.7e+02 Score=24.58 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK 152 (441)
Q Consensus 116 ~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkk 152 (441)
+++.+|+.++..|+..++.++++.+=.-.+..++|-.
T Consensus 18 ~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiL 54 (106)
T 4e61_A 18 ETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEIL 54 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444444444444444433
No 244
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=38.98 E-value=1.7e+02 Score=24.41 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013531 80 KAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 80 ~~i~ek~~~I~~l~~ei~sL 99 (441)
+-|+|.-..|-.+++++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~ri 25 (114)
T 2xzr_A 6 DKIEEILSKIYHIENEIARI 25 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHH
Confidence 33333333444444444433
No 245
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=38.64 E-value=85 Score=22.78 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~eeLEark~eLEkkleELe 157 (441)
-.+|+..+..++.+...||.....+|+-+..++
T Consensus 19 naklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544444443
No 246
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=38.59 E-value=1.7e+02 Score=30.61 Aligned_cols=17 Identities=0% Similarity=0.053 Sum_probs=7.7
Q ss_pred cchHHHHHhhhhhhHHH
Q 013531 253 QPHVETIKAKWIPAVKE 269 (441)
Q Consensus 253 ~P~l~~~~~K~~pv~~~ 269 (441)
-|....+...+..++.+
T Consensus 204 ~p~GarL~~aL~~f~~d 220 (484)
T 3lss_A 204 KGGLVQLQVALVSYSLD 220 (484)
T ss_dssp EHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 247
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=38.29 E-value=89 Score=24.64 Aligned_cols=42 Identities=17% Similarity=0.388 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekk 159 (441)
+.++...+..|..--.-.=++++.+|..-..+|..+..+..+
T Consensus 23 I~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~r 64 (72)
T 2xu6_A 23 IRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDR 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333334444443333333333444444333344333333333
No 248
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=37.79 E-value=1.2e+02 Score=22.25 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013531 120 ELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 120 eLe~eVe~Lkkeie~~e 136 (441)
-.+..|.+|+++|++++
T Consensus 9 fAERsV~KLek~ID~LE 25 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLE 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 249
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=37.58 E-value=77 Score=30.84 Aligned_cols=42 Identities=19% Similarity=0.418 Sum_probs=34.1
Q ss_pred hhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 59 s~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+++..+..+|..-+..+.+.|+.|++.-++|.+++.+|+.+.
T Consensus 216 ~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~ 257 (268)
T 2yo3_A 216 QKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIK 257 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666667777778888899999999999999999998774
No 250
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=37.38 E-value=97 Score=25.14 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEAR 145 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEar 145 (441)
|+.++..|+.++.+++.++..+.++
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544443
No 251
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=36.58 E-value=31 Score=25.51 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=20.4
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
...+++|..+|..||..|..+.+.|.+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445777888888888888888776664
No 252
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=36.52 E-value=17 Score=36.11 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 013531 78 KEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
+...+..++.+|..|++.|..|+
T Consensus 23 L~~~l~~~~~ki~~L~~~i~~l~ 45 (319)
T 1fzc_C 23 LQEIYNSNNQKIVNLKEKVAQLE 45 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 253
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=36.51 E-value=94 Score=31.34 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=4.6
Q ss_pred HHHHhhHHHHhh
Q 013531 55 RSLESHIDEKTQ 66 (441)
Q Consensus 55 ~~Les~i~~~~~ 66 (441)
..++.++.+++.
T Consensus 6 ~~~~~r~~el~~ 17 (354)
T 3d5a_X 6 DRLEEEYRELEA 17 (354)
T ss_dssp HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334443333
No 254
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=35.97 E-value=34 Score=33.04 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 136 QKEKEALEARAIEAEKKISDLSAKL 160 (441)
Q Consensus 136 ek~~eeLEark~eLEkkleELekkl 160 (441)
..+.+.|....+++..++..++.++
T Consensus 67 ~arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 67 AARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 255
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=35.39 E-value=1.2e+02 Score=27.92 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELe 157 (441)
.+.+.+|-+.|..|..+.=+++......+.+.++|..+++++.
T Consensus 64 ~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 64 QDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 3444455555555555544455444444444555555555553
No 256
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.38 E-value=1.6e+02 Score=23.80 Aligned_cols=45 Identities=31% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 136 QKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (441)
Q Consensus 136 ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~ 180 (441)
..+.+.|..-+..++.+++.-...++.+++.+...+.+|.++...
T Consensus 36 qkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 36 ARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 257
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=33.99 E-value=75 Score=25.09 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 114 AHARADELEKQIDNLKKESEKQQKEKEALE 143 (441)
Q Consensus 114 a~~~~~eLe~eVe~Lkkeie~~ek~~eeLE 143 (441)
|.+-+..|+.+...|..+++.+..+...|.
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 258
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=33.89 E-value=2.4e+02 Score=28.05 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=19.7
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhc
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELK 69 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~ 69 (441)
...||+.|+.+..+-+.+|.+-.+-+.
T Consensus 131 s~eEL~~Lk~Ef~HHqeKv~eY~~LLe 157 (323)
T 2p01_A 131 SGEELDKLWREFLHHKEKVHEYNVLLE 157 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888777655443
No 259
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=33.66 E-value=2.2e+02 Score=24.18 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 013531 167 NDEQKSKIRKTERALK 182 (441)
Q Consensus 167 ~aEQk~qIeelEk~lk 182 (441)
+..++.+|.++.+.+.
T Consensus 71 Vs~lq~KiaeLKrqLA 86 (113)
T 4fi5_A 71 AVSIQAKIDELKRQLA 86 (113)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 260
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=33.61 E-value=1.2e+02 Score=30.86 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013531 126 DNLKKESEKQQKEKEALEARAIE 148 (441)
Q Consensus 126 e~Lkkeie~~ek~~eeLEark~e 148 (441)
+.|+.+++.+.+++++++.+...
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~ 28 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQ 28 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333
No 261
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=33.51 E-value=4.6e+02 Score=27.85 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 138 EKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (441)
Q Consensus 138 ~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIee 176 (441)
.++.-.+++..++.+...++.+..+++.....|+...++
T Consensus 488 ~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e 526 (592)
T 1f5n_A 488 EIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQE 526 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444433333333
No 262
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.35 E-value=84 Score=22.34 Aligned_cols=6 Identities=17% Similarity=0.030 Sum_probs=2.1
Q ss_pred HHHHHH
Q 013531 131 ESEKQQ 136 (441)
Q Consensus 131 eie~~e 136 (441)
+|...+
T Consensus 17 EI~Kte 22 (42)
T 2l5g_B 17 EITMVE 22 (42)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 263
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=33.31 E-value=75 Score=24.94 Aligned_cols=47 Identities=26% Similarity=0.255 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 91 SLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKE 138 (441)
Q Consensus 91 ~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~ 138 (441)
.|.+.+..++ +......+-...+++....|..|++-|+.+|+.++..
T Consensus 19 el~~~L~~~~-k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERn 65 (71)
T 3bbp_D 19 ELVQKLSSTT-KSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERN 65 (71)
T ss_dssp -----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555554 3333445556677888888999999999999998764
No 264
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=32.73 E-value=2.6e+02 Score=24.72 Aligned_cols=88 Identities=9% Similarity=0.153 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhh---HHhhHHHHHHHHHHHHHH
Q 013531 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLN---AAEQVDKAHARADELEKQ 124 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~---~~~~~~~a~~~~~eLe~e 124 (441)
..|..+|.+|++.|...-.--.| +.--..=+..+.|....+.+|..=|......++.. .......|-++.+.|..+
T Consensus 14 adl~kri~qL~~ri~~n~~vQEG-e~P~edp~~Ll~El~~~~~~L~~Li~~IN~TN~~~~~~~~~tl~eaia~rd~L~~~ 92 (154)
T 3kdq_A 14 VEAQRRYSELNQLLLDVAKVQEG-DQPAENPHEILTELEELTTRINDLVRRINRTNSVTEFSEGMTLADALSVRDALLKK 92 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTEEETT-CCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEETTEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCeecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHH
Confidence 44677788888887765321111 11011123333333333333333333332222111 233445778888888888
Q ss_pred HHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQ 136 (441)
Q Consensus 125 Ve~Lkkeie~~e 136 (441)
+.-|+...+.-.
T Consensus 93 ~~~l~~~~~~a~ 104 (154)
T 3kdq_A 93 RTLYSDLADQLT 104 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 887776666543
No 265
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=32.70 E-value=2.2e+02 Score=23.91 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 123 ~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
+++...+.++.++..++..+......+++..+..=.++.+++
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333334444433
No 266
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=32.65 E-value=3e+02 Score=25.43 Aligned_cols=12 Identities=0% Similarity=0.064 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 013531 129 KKESEKQQKEKE 140 (441)
Q Consensus 129 kkeie~~ek~~e 140 (441)
+.++......+.
T Consensus 261 ~~el~~~~~~v~ 272 (322)
T 1u4q_A 261 ETDFTVHKDRVN 272 (322)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 267
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.44 E-value=59 Score=33.20 Aligned_cols=15 Identities=7% Similarity=-0.028 Sum_probs=6.3
Q ss_pred cchHHHHHhhhhhhH
Q 013531 253 QPHVETIKAKWIPAV 267 (441)
Q Consensus 253 ~P~l~~~~~K~~pv~ 267 (441)
-|.-..+...+..++
T Consensus 168 ~p~ga~l~~~L~~~~ 182 (425)
T 2dq3_A 168 AGWGARLERALINFM 182 (425)
T ss_dssp ETHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 344444444444443
No 268
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.43 E-value=1.1e+02 Score=21.68 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 013531 133 EKQQKEKEA 141 (441)
Q Consensus 133 e~~ek~~ee 141 (441)
++...+++.
T Consensus 12 ~kVdrEI~K 20 (42)
T 2l5g_B 12 DRVDREITM 20 (42)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 269
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.34 E-value=1.3e+02 Score=23.34 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhHHH
Q 013531 48 DQLKSKIRSLESHIDE 63 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~ 63 (441)
+.++..+..|.+-|-.
T Consensus 15 ~~in~~f~~Lr~lvP~ 30 (83)
T 1nkp_B 15 DHIKDSFHSLRDSVPS 30 (83)
T ss_dssp HHHHHHHHHHHTTSGG
T ss_pred HHHHHHHHHHHHHCCC
Confidence 4455555555555543
No 270
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=32.21 E-value=3.4e+02 Score=25.82 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 79 EKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALE 143 (441)
Q Consensus 79 e~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLE 143 (441)
++.|.+-+.++.-|-.+|..++..-+.. -++.--.-..+...|+-|+.++...+.+..++..|+
T Consensus 61 dddl~DIsdklgvLl~e~ge~e~~~a~~-~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kLk 124 (234)
T 3plt_A 61 DDDVSDVTDKLGVLIYELGELQDQFIDK-YDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLK 124 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5678888888888888888887443221 222222222344444444444444444444444443
No 271
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=31.87 E-value=1.8e+02 Score=23.05 Aligned_cols=33 Identities=33% Similarity=0.382 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEALEAR 145 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEar 145 (441)
+.-.+..+++..+..|+.+-..+..++..|..+
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555544444444444333
No 272
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=31.70 E-value=2e+02 Score=24.58 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=17.9
Q ss_pred CCCCchhHhHHHHHHHHHHHHhhHHH
Q 013531 38 VDSSPLKIELDQLKSKIRSLESHIDE 63 (441)
Q Consensus 38 ~~~~~~~~el~~l~~~i~~Les~i~~ 63 (441)
...+.+..||+.||..-+++-..=++
T Consensus 32 ~~sDPL~~ELeRLr~~~d~~~K~HE~ 57 (115)
T 3vem_A 32 VFNDPFLHELEKLRRESENSKKTFEE 57 (115)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999888888777443333
No 273
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=31.39 E-value=1.6e+02 Score=24.27 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhhhhch
Q 013531 86 SERIVSLQKELSSLQKKET 104 (441)
Q Consensus 86 ~~~I~~l~~ei~sLq~~~~ 104 (441)
.+.|.+.+..|+.+|+.+.
T Consensus 31 ~qvikEIs~Kv~~Iqn~~L 49 (92)
T 1x4t_A 31 RQIIGEISKKVAQIQNAGL 49 (92)
T ss_dssp HHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhhCCCC
Confidence 3445555556666666554
No 274
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=31.14 E-value=2.7e+02 Score=24.45 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhc
Q 013531 47 LDQLKSKIRSLESHIDEKTQELK 69 (441)
Q Consensus 47 l~~l~~~i~~Les~i~~~~~~i~ 69 (441)
+.+|...+..|+..+++...+++
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~ 35 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELE 35 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544443
No 275
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=31.04 E-value=4.9e+02 Score=27.37 Aligned_cols=85 Identities=24% Similarity=0.241 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 90 VSLQKELSSLQKKETLNAAEQVDKAHARADELE-KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (441)
Q Consensus 90 ~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe-~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~a 168 (441)
++-|.+++..|++. ..+.+|++.+.+-- +-+.+++..-..++.+.+.+..+-... .++.+.++++.++.++
T Consensus 5 a~yq~~la~yq~el-----arvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~a---ka~Ye~~l~kY~~dla 76 (497)
T 3iox_A 5 ADYQAKLTAYQTEL-----ARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADA---KADYEAKLAKYQADLA 76 (497)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 35677888887543 33455666544322 234444444444444444444333322 3455666777777777
Q ss_pred HHHHHHHHHHHHHH
Q 013531 169 EQKSKIRKTERALK 182 (441)
Q Consensus 169 EQk~qIeelEk~lk 182 (441)
..+....+.+..++
T Consensus 77 kY~~~~AeY~~kl~ 90 (497)
T 3iox_A 77 KYQKDLADYPVKLK 90 (497)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666666665
No 276
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=30.87 E-value=1.3e+02 Score=25.47 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=17.6
Q ss_pred HHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (441)
Q Consensus 56 ~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei 96 (441)
.-.+-+++.++++.--.+.|..+-+.+-..+-.|.+||..+
T Consensus 64 k~~~aldekekqlavaneiirslsdevmrneiritslqgdl 104 (142)
T 1pl5_A 64 KAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDL 104 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhHHHHHhhheeeeeeccch
Confidence 33444555555554444444444333333333344444333
No 277
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=30.30 E-value=53 Score=20.88 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhHHHHh
Q 013531 48 DQLKSKIRSLESHIDEKT 65 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~~~ 65 (441)
..|+.+|+.||-.|.+++
T Consensus 10 arlkqeiaaleyeiaale 27 (28)
T 3ra3_B 10 ARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 345666666666666554
No 278
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=30.03 E-value=2.6e+02 Score=23.85 Aligned_cols=10 Identities=40% Similarity=0.242 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 013531 123 KQIDNLKKES 132 (441)
Q Consensus 123 ~eVe~Lkkei 132 (441)
.+++.|..++
T Consensus 88 ~~~~~l~~~i 97 (142)
T 3gp4_A 88 KQRIELKNRI 97 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 279
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=29.30 E-value=1.1e+02 Score=31.05 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=4.6
Q ss_pred HHHHHhhHHHHhhh
Q 013531 54 IRSLESHIDEKTQE 67 (441)
Q Consensus 54 i~~Les~i~~~~~~ 67 (441)
+..++.++.+++.+
T Consensus 19 l~~~~~r~~el~~~ 32 (371)
T 1zbt_A 19 LQAVEDRYEELGEL 32 (371)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 280
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=29.27 E-value=2.8e+02 Score=23.98 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEAR 145 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEar 145 (441)
|-++.+.++.++......+..+...
T Consensus 144 ll~~h~~~~~el~~~~~~i~~l~~~ 168 (213)
T 1cun_A 144 LLKKHEAFETDFTVHKDRVNDVCAN 168 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333
No 281
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.10 E-value=64 Score=31.12 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=8.0
Q ss_pred hHhHHHHHHHHHHHHhhHH
Q 013531 44 KIELDQLKSKIRSLESHID 62 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~ 62 (441)
..++.++++.+.+++..+.
T Consensus 69 ~~~l~~~~a~l~~~~a~l~ 87 (369)
T 4dk0_A 69 INTLNTRKAALASYQAQLV 87 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 282
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=29.04 E-value=2.3e+02 Score=22.89 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 013531 83 QDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 83 ~ek~~~I~~l~~ei~sLq 100 (441)
.-++..-..|+.+|..++
T Consensus 26 R~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 26 RFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333444444555555554
No 283
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.03 E-value=2.2e+02 Score=22.67 Aligned_cols=30 Identities=27% Similarity=0.281 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQKEKEAL 142 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ek~~eeL 142 (441)
+|-.-+..|+.+...+..+++.+..+...|
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L 78 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQL 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333333
No 284
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=28.94 E-value=3e+02 Score=24.26 Aligned_cols=49 Identities=16% Similarity=-0.060 Sum_probs=22.7
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 013531 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ 93 (441)
Q Consensus 44 ~~el~~l~~~i~~Les~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~ 93 (441)
...++.|+..=..|...+..+...|.+- ..+.+.-..+.+...-|.+++
T Consensus 80 ~~~~~~l~~~W~~L~~~~~~R~~~L~~a-~~~~~F~~~~~e~~~Wl~ek~ 128 (218)
T 3edu_A 80 AEWKDGLNEMWADLLELIDTRMQLLAAS-YDLHRYFYTGAEILGLIDEKH 128 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666665555555442 223333333344444443333
No 285
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.65 E-value=1.7e+02 Score=21.37 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013531 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 71 k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
|..++.++|..+..++.....|..++..|+
T Consensus 20 Kk~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666666666666666666665
No 286
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=28.62 E-value=96 Score=19.54 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKE 138 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~ 138 (441)
+++|-++++.|++.++++.++
T Consensus 3 adelykeledlqerlrklrkk 23 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544443
No 287
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=28.57 E-value=83 Score=31.57 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 73 EVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 73 ~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~e 136 (441)
+.++..+..+.+.++.|..+...++ ....+.|...+..++++|++.+++.+....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 301 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIE---------KRPENKKAHNKRDNLQQQLDANEQKIEEGK 301 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---------hCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444441 112234556677777888888877666543
No 288
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=28.36 E-value=1.8e+02 Score=21.49 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 123 KQIDNLKKESEKQQKEKEALEARAIEAEKK 152 (441)
Q Consensus 123 ~eVe~Lkkeie~~ek~~eeLEark~eLEkk 152 (441)
.....+-.+++.++.-+..++........+
T Consensus 23 ~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~ 52 (65)
T 1gl2_D 23 QMGQEIGNELDEQNEIIDDLANLVENTDEK 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443333333
No 289
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=28.14 E-value=2.4e+02 Score=24.43 Aligned_cols=38 Identities=29% Similarity=0.424 Sum_probs=15.1
Q ss_pred HhhHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKE 95 (441)
Q Consensus 58 es~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~e 95 (441)
.+-+++.++++.--.+.|..+-+.+-..+-.|.+||..
T Consensus 90 ~~aldekekqlavaneiirslsdevmrneiritslqgd 127 (166)
T 1nyh_A 90 ASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGD 127 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhhheeeeeeccc
Confidence 44444444444443333333333333333333333333
No 290
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=28.09 E-value=48 Score=25.46 Aligned_cols=12 Identities=17% Similarity=0.551 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLK 129 (441)
Q Consensus 118 ~~eLe~eVe~Lk 129 (441)
+..|..++...+
T Consensus 14 I~~L~~~v~~~e 25 (64)
T 3t97_C 14 ITSLHREVEKVK 25 (64)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334443333
No 291
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=27.27 E-value=3.2e+02 Score=23.97 Aligned_cols=10 Identities=30% Similarity=0.318 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 013531 139 KEALEARAIE 148 (441)
Q Consensus 139 ~eeLEark~e 148 (441)
.+.++.+...
T Consensus 124 L~~ie~RL~~ 133 (175)
T 4abx_A 124 LDRVEARLSA 133 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 292
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=27.26 E-value=2.6e+02 Score=23.02 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 013531 79 EKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 79 e~~i~ek~~~I~~l~~ei~sLq 100 (441)
-..+...+..+..++..|+-|.
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lk 29 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLK 29 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 3344444555555555555553
No 293
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=26.97 E-value=60 Score=30.99 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhHHHH
Q 013531 50 LKSKIRSLESHIDEK 64 (441)
Q Consensus 50 l~~~i~~Les~i~~~ 64 (441)
++.++.++++.+...
T Consensus 67 ~~~~~~~~~a~l~~~ 81 (341)
T 3fpp_A 67 AENQIKEVEATLMEL 81 (341)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 294
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=26.94 E-value=1.8e+02 Score=21.14 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159 (441)
Q Consensus 123 ~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekk 159 (441)
.++.+|+...+.+..++..|+..-.+.|.++..|+..
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4566666666666666666665555555554444443
No 295
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.83 E-value=1.2e+02 Score=23.41 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhHH
Q 013531 50 LKSKIRSLESHID 62 (441)
Q Consensus 50 l~~~i~~Les~i~ 62 (441)
++..+..|.+.|-
T Consensus 27 in~~f~~Lr~lvP 39 (80)
T 1hlo_A 27 IKDSFHSLRDSVP 39 (80)
T ss_dssp HHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHCc
Confidence 4444444444444
No 296
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=26.63 E-value=1.5e+02 Score=23.30 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhHH
Q 013531 48 DQLKSKIRSLESHID 62 (441)
Q Consensus 48 ~~l~~~i~~Les~i~ 62 (441)
+.|+..+..|.+.|-
T Consensus 14 ~~lk~~f~~Lr~~vP 28 (80)
T 1nlw_A 14 AHLRLSLEKLKGLVP 28 (80)
T ss_dssp HHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHcC
Confidence 445555555555554
No 297
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=26.61 E-value=3e+02 Score=23.50 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=13.1
Q ss_pred CCchhHhHHHHHHHHHHHHhh
Q 013531 40 SSPLKIELDQLKSKIRSLESH 60 (441)
Q Consensus 40 ~~~~~~el~~l~~~i~~Les~ 60 (441)
+.....++.+|..++..|+..
T Consensus 4 a~~i~~~l~~Leae~q~L~~~ 24 (119)
T 3etw_A 4 AASLVGELQALDAEYQNLANQ 24 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 344556777777777777443
No 298
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=26.52 E-value=1.8e+02 Score=25.01 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhch
Q 013531 80 KAIQDKSERIVSLQKELSSLQKKET 104 (441)
Q Consensus 80 ~~i~ek~~~I~~l~~ei~sLq~~~~ 104 (441)
..|+.+++.+..+...++.+...|.
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~rgd 34 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSLVEA 34 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4455666666666666666665553
No 299
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=26.46 E-value=2.7e+02 Score=27.73 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQKEKEALE 143 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~eeLE 143 (441)
++.|+++++++++++++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 249 IKELNEERDILNKDLNKAL 267 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 300
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=25.89 E-value=2.6e+02 Score=22.54 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQQ 136 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~e 136 (441)
-|.+-+.+|.-++..+.++-+.++
T Consensus 66 qAraDL~~l~r~~av~g~E~RRIN 89 (90)
T 4b6x_A 66 HARADLADLQRRFAVLRNEDRRIN 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcc
Confidence 555555566666666666655543
No 301
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=25.65 E-value=2e+02 Score=21.59 Aligned_cols=38 Identities=26% Similarity=0.292 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (441)
Q Consensus 123 ~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekkl 160 (441)
.++.+|+.....+..++..|+..-.+.|.++..|++.+
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655555555555544444433
No 302
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=25.28 E-value=2.4e+02 Score=21.92 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 013531 46 ELDQLKSKIRSLESHIDEKTQELKGKD------EVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i~~k~------~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~ 103 (441)
+|.+....+..|.+=|.+.+..+.+-+ +.+...-+........|...+..|.++...|
T Consensus 3 ~L~~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g 66 (119)
T 3uun_A 3 NLDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLG 66 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455666666677666666655554321 2233333333344445555555555554333
No 303
>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A
Probab=25.26 E-value=37 Score=26.79 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=11.3
Q ss_pred chHhHHHhhcccHHHHHHHHHHHHH
Q 013531 336 HVDNVRVALKPYTKKVVRAYGKFLK 360 (441)
Q Consensus 336 ~vdkv~~~~~Py~e~v~~~~k~~~~ 360 (441)
|+++-..-+.|.+.++.+-+-.|++
T Consensus 41 YfektqeqltPlvkkagTdl~nFlS 65 (77)
T 2ou1_A 41 YFEKSKEQLTPLIKKAGTELVNFLS 65 (77)
T ss_dssp HHHHHHTTTSHHHHTHHHHTTC-CH
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHH
Confidence 3334444555555555444444443
No 304
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=25.08 E-value=5.7e+02 Score=26.16 Aligned_cols=159 Identities=11% Similarity=0.076 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHHHh------hHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhHHhhHHHHHH
Q 013531 43 LKIELDQLKSKIRSLES------HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHA 116 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les------~i~~~~~~i~~k~~~l~~ke~~i~ek~~~I~~l~~ei~sLq~~~~~~~~~~~~~a~~ 116 (441)
+..++.....+|..|.. .+..+++...+--+-....-..+..+-.-+.+...++.=+..+........-|.-..
T Consensus 47 lE~eI~a~~~~v~~l~~~a~~~~~~~~L~~~y~~L~~~a~~Rr~~Le~L~qFl~d~~ee~~Wi~EKe~~~~s~d~gd~l~ 126 (450)
T 3r6n_A 47 IHNSIGDYRWQLDKIKADLREKSAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDCEEEELLYDWSDKNT 126 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcChh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK----ISDLSAKLEKLQKINDEQKSKIRKTERALK--EEMMRAKF 190 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkk----leELekklEeLek~~aEQk~qIeelEk~lk--eei~k~k~ 190 (441)
.+..+...-+.|+.+++..+..+..+......+-.. ..+.+..++.|+..=+........-+..++ ........
T Consensus 127 dv~~l~~khq~l~~EL~~~e~~i~~v~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~QF~~ 206 (450)
T 3r6n_A 127 NIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFE 206 (450)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred hhhhhhhhHHH
Q 013531 191 EATSRSKELTE 201 (441)
Q Consensus 191 E~~~kAk~l~e 201 (441)
++.+-...|.+
T Consensus 207 Da~EaesWL~e 217 (450)
T 3r6n_A 207 EAQSTEAYLKG 217 (450)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 305
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=24.96 E-value=53 Score=28.35 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=10.0
Q ss_pred chhHhHHHHHHHHHHHHhhHHH
Q 013531 42 PLKIELDQLKSKIRSLESHIDE 63 (441)
Q Consensus 42 ~~~~el~~l~~~i~~Les~i~~ 63 (441)
+...+|..|..+|.+|+.++..
T Consensus 20 ~~~~~l~~L~~~~~~L~~~l~~ 41 (168)
T 1buu_A 20 AIEVKLANMEAEINTLKSKLEL 41 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 306
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=24.91 E-value=2.5e+02 Score=21.98 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013531 124 QIDNLKKESEKQQKEKE 140 (441)
Q Consensus 124 eVe~Lkkeie~~ek~~e 140 (441)
.|+.|.++.++++.+..
T Consensus 5 ~v~~l~~E~eel~~klk 21 (71)
T 1uix_A 5 DVANLANEKEELNNKLK 21 (71)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 307
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=24.71 E-value=2.7e+02 Score=25.51 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeL 163 (441)
|.+...+|..-|..++.+.-+++.....-...+++|+.++.+|
T Consensus 60 L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDL 102 (182)
T 1ytz_I 60 LQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDL 102 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444555555555555555555444444444444444444333
No 308
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=24.63 E-value=2.8e+02 Score=22.49 Aligned_cols=16 Identities=6% Similarity=0.320 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNL 128 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~L 128 (441)
.++..+.++++.|+.+
T Consensus 42 ~ie~~l~EA~ell~qM 57 (102)
T 1vcs_A 42 NVEKQLEEARELLEQM 57 (102)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 309
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=24.54 E-value=1.8e+02 Score=24.42 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleEL 156 (441)
.+.+|-+.|..|+.+.=+++.+....+-+.++|..++.++
T Consensus 50 ~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 50 KAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444444443
No 310
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=24.48 E-value=72 Score=24.47 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLe 164 (441)
|..|-.++...+..-..++....-++.+..+|+.-+..++
T Consensus 14 I~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E 53 (64)
T 3t97_C 14 ITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLE 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334444444444443333
No 311
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=24.42 E-value=2.2e+02 Score=21.26 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK 152 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkk 152 (441)
+..|.++|.+|+.+...+++-.++=..-+.++|..
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~ 46 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKL 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566888888777777666555433333334443
No 312
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=24.11 E-value=2.6e+02 Score=21.87 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEA 144 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEa 144 (441)
..+|..++++-+++|+.++.-+..+-+
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~ 31 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRS 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554444433
No 313
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=24.01 E-value=2.4e+02 Score=23.58 Aligned_cols=38 Identities=26% Similarity=0.209 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISD 155 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleE 155 (441)
+.+|-+.|..|+.+.=+++......+-+.++|..++.+
T Consensus 51 ~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (106)
T 1j1d_B 51 AKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIND 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 314
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=23.83 E-value=2.5e+02 Score=22.33 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (441)
Q Consensus 123 ~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELe 157 (441)
.....+-.+++.++..+..++.+...+..++...+
T Consensus 44 ~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n 78 (87)
T 1l4a_D 44 NMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEAN 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555544444444444333333
No 315
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=23.50 E-value=97 Score=23.20 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 013531 82 IQDKSERIVSLQKELSSLQKKE 103 (441)
Q Consensus 82 i~ek~~~I~~l~~ei~sLq~~~ 103 (441)
|+++.++-.+|...|..|-..|
T Consensus 27 ieelkkkweelkkkieelgggg 48 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEELGGGG 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCc
Confidence 5555566666777777775444
No 316
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.30 E-value=2.2e+02 Score=20.73 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013531 113 KAHARADELEKQIDNLKKESEKQ 135 (441)
Q Consensus 113 ~a~~~~~eLe~eVe~Lkkeie~~ 135 (441)
-|+..+.+|++.|+.|+.++...
T Consensus 9 fAERsV~KLek~ID~LEdeL~~e 31 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQ 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555554444433
No 317
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=23.14 E-value=4.3e+02 Score=24.08 Aligned_cols=7 Identities=29% Similarity=0.392 Sum_probs=2.9
Q ss_pred hhhhHHH
Q 013531 195 RSKELTE 201 (441)
Q Consensus 195 kAk~l~e 201 (441)
.+..|.+
T Consensus 143 eS~~l~~ 149 (192)
T 2p22_C 143 ESSQLET 149 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 318
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=23.14 E-value=2.7e+02 Score=21.77 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKEKEALE 143 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~~eeLE 143 (441)
|.+.|+.|.++.++++.+...++
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ 26 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAE 26 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 319
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=23.09 E-value=2.2e+02 Score=21.04 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhcc
Q 013531 46 ELDQLKSKIRSLESHIDEKTQELKG 70 (441)
Q Consensus 46 el~~l~~~i~~Les~i~~~~~~i~~ 70 (441)
+...|+.+-..|+.+++..+++|..
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lsk 35 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHH
Confidence 3444555555555555555555444
No 320
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.01 E-value=3.9e+02 Score=23.49 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 013531 82 IQDKSERIVSLQKELSSL 99 (441)
Q Consensus 82 i~ek~~~I~~l~~ei~sL 99 (441)
|-.+.+.|..| |+||
T Consensus 66 li~kakqIe~L---IdsL 80 (151)
T 1yke_B 66 IILKTRQINKL---IDSL 80 (151)
T ss_dssp HHHHHHHHHHH---HHHC
T ss_pred HHHHHHHHHHH---HHhC
Confidence 33344555544 4455
No 321
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.97 E-value=1.5e+02 Score=23.97 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=18.2
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhcch
Q 013531 43 LKIELDQLKSKIRSLESHIDEKTQELKGK 71 (441)
Q Consensus 43 ~~~el~~l~~~i~~Les~i~~~~~~i~~k 71 (441)
+..++..|+.++.+|+++|.+++.+++..
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~L~~~ 34 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAKLKNR 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44556666666666666666666666543
No 322
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=22.92 E-value=7.3e+02 Score=26.68 Aligned_cols=33 Identities=12% Similarity=0.398 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (441)
Q Consensus 149 LEkkleELekklEeLek~~aEQk~qIeelEk~l 181 (441)
+..+..++...-+.|.......+.++++.....
T Consensus 448 I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~~ 480 (863)
T 1sjj_A 448 VNARCQKICDQWDNLGALTQKRREALERTEKLL 480 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666655554443
No 323
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=22.84 E-value=2.8e+02 Score=21.80 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIR 175 (441)
Q Consensus 130 keie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIe 175 (441)
.+|+++..+++.|...+.-+=.+++.++..-..|+......+.+++
T Consensus 21 sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle 66 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLD 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444433
No 324
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.83 E-value=4.2e+02 Score=23.83 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013531 73 EVVAQKEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 73 ~~l~~ke~~i~ek~~~I~~l~~ei~sL 99 (441)
+.-.+..++.++--..+..+.+++...
T Consensus 71 EQq~ql~~I~~e~r~~~~~Lr~ql~ak 97 (175)
T 3lay_A 71 EQQATAQKIYDDYYTQTSALRQQLISK 97 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444333
No 325
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=22.73 E-value=2.5e+02 Score=21.58 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 115 HARADELEKQIDNLKKESEKQQKEKE 140 (441)
Q Consensus 115 ~~~~~eLe~eVe~Lkkeie~~ek~~e 140 (441)
.|+=.+|+-++++|..+++.++..+.
T Consensus 31 FAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 31 YAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666677777777777766665554
No 326
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=22.58 E-value=3.7e+02 Score=27.17 Aligned_cols=54 Identities=6% Similarity=0.083 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 013531 129 KKESEKQQKEKEALEARAIEAEKKISDLSAK--LEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 129 kkeie~~ek~~eeLEark~eLEkkleELekk--lEeLek~~aEQk~qIeelEk~lk 182 (441)
..+|.....++..+-.+..++.+++...+.. =..-+...+++...++++-+.+.
T Consensus 95 n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS~~v~ 150 (463)
T 2d4y_A 95 NIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVG 150 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHHHhhcC
Confidence 3444444444444444445555544433221 12333444444455555554443
No 327
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=22.56 E-value=3.7e+02 Score=23.14 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013531 78 KEKAIQDKSERIVSLQKELSSL 99 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sL 99 (441)
.|+.|....+.|..|+..+..+
T Consensus 33 ~~~~~~~~~~~ig~L~~~l~~~ 54 (125)
T 4g2k_A 33 IENEIARIKKLIGNLVSRLRRL 54 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566665555544
No 328
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=22.48 E-value=3.2e+02 Score=22.38 Aligned_cols=58 Identities=9% Similarity=0.124 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (441)
Q Consensus 125 Ve~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aEQk~qIeelEk~lk 182 (441)
+++-.+++.++++.+.+|..--.++...+.+....++.++...+.-....++..+.+.
T Consensus 16 i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~ 73 (109)
T 3hd7_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 73 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555555555555555555555555555555555444
No 329
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=22.33 E-value=2.2e+02 Score=20.44 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESEKQQKE 138 (441)
Q Consensus 121 Le~eVe~Lkkeie~~ek~ 138 (441)
+++.|+.|+..++.+..+
T Consensus 3 lEekv~~Le~~ld~LqTr 20 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTR 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444443333333333
No 330
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=22.09 E-value=78 Score=31.06 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013531 139 KEALEARAIEAEKKISDLSAKL 160 (441)
Q Consensus 139 ~eeLEark~eLEkkleELekkl 160 (441)
++.|+.+...++.+++++++.+
T Consensus 187 ie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 187 LESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333443333
No 331
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=21.97 E-value=2.8e+02 Score=21.51 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEe 162 (441)
++.|......+-.+++.++.-+..++........++.....++..
T Consensus 28 v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~ 72 (82)
T 2nps_D 28 IGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAK 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555555555554444444444444444433
No 332
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=21.65 E-value=2.8e+02 Score=24.28 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=36.6
Q ss_pred hHHHHHhhhhhhHHHHHHhhhc------cc-chhHHHhhhHHHHHHHHhhhhcchhHHhhhhhcchhHHHHhhhhhhHHH
Q 013531 255 HVETIKAKWIPAVKEQWVVFTT------NV-EPHVQTLKTKTIEACEATKTAVTPHIIRVQEVVDPYFQEAKKFSKPYID 327 (441)
Q Consensus 255 ~l~~~~~K~~pv~~~~w~~~~~------~v-~p~Ve~~ktk~~p~~ea~r~~~~phv~~vk~~v~Py~~e~ke~~~py~~ 327 (441)
|...+..|++.+|++.+..+-. ++ -|+++++.+-..-..+++...+-| ..++...+|-+..|++...-.|.
T Consensus 20 H~~eI~~KLv~Im~~r~~~~l~~Wd~k~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~--~~v~~Im~~Vf~~fk~~l~~~~~ 97 (141)
T 3n1e_A 20 HIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSPCFRNICKQMTKMHEAIFDLLPE--EQTQMLFLRINASYKLHLKKQLS 97 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCSSSSCHHHHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777664433 22 344455544444433333333333 34444455555555555555444
No 333
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=21.60 E-value=2.9e+02 Score=21.58 Aligned_cols=9 Identities=11% Similarity=0.161 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 013531 174 IRKTERALK 182 (441)
Q Consensus 174 IeelEk~lk 182 (441)
...+++.+.
T Consensus 41 ~~~lek~L~ 49 (71)
T 1s1c_X 41 KAAFEKNIN 49 (71)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 335555555
No 334
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.59 E-value=3.1e+02 Score=21.78 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhhHHHH
Q 013531 48 DQLKSKIRSLESHIDEK 64 (441)
Q Consensus 48 ~~l~~~i~~Les~i~~~ 64 (441)
+.|+..+..|.+.|=.+
T Consensus 19 ~~ln~~f~~Lr~~vP~~ 35 (88)
T 1nkp_A 19 NELKRSFFALRDQIPEL 35 (88)
T ss_dssp HHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHCCCC
Confidence 44666667776666554
No 335
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=21.59 E-value=3e+02 Score=21.68 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 127 NLKKESEKQQKEKEALEARAIEAEKKI 153 (441)
Q Consensus 127 ~Lkkeie~~ek~~eeLEark~eLEkkl 153 (441)
.+-.+++.++.-+..++........++
T Consensus 47 ~ig~Eld~Qn~~Ld~i~~~~D~~~~rl 73 (87)
T 1sfc_D 47 DMGNEIDTQNRQIDRIMEKADSNKTRI 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333444444444444443333333333
No 336
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=21.31 E-value=2.3e+02 Score=20.32 Aligned_cols=9 Identities=44% Similarity=0.593 Sum_probs=3.4
Q ss_pred HHHHHHHhh
Q 013531 92 LQKELSSLQ 100 (441)
Q Consensus 92 l~~ei~sLq 100 (441)
|++.++.||
T Consensus 10 Le~~ld~Lq 18 (46)
T 3swy_A 10 LGSSLDTLQ 18 (46)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 337
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=21.25 E-value=1.2e+02 Score=25.92 Aligned_cols=13 Identities=46% Similarity=0.588 Sum_probs=1.6
Q ss_pred HHHHHHHHHHHHH
Q 013531 121 LEKQIDNLKKESE 133 (441)
Q Consensus 121 Le~eVe~Lkkeie 133 (441)
|..+++.|+.+++
T Consensus 4 l~~~~~~l~~~~~ 16 (182)
T 3kqg_A 4 LNAQIPELKSDLE 16 (182)
T ss_dssp ---------CHHH
T ss_pred hhhhHHHHHHHHH
Confidence 3444444444333
No 338
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=21.05 E-value=6.8e+02 Score=25.58 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=29.9
Q ss_pred HHHHHHHHhhh-hchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 91 SLQKELSSLQK-KETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (441)
Q Consensus 91 ~l~~ei~sLq~-~~~~~~~~~~~~a~~~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLE 150 (441)
.|-+=++..|+ +|.-+ +++++.|..+|+..++.|.++++-+-+|-.....+.
T Consensus 505 alfsyfeeyqkgegkwd--------qakldqlknqvdgyeksikkqesaiyelhnqidalr 557 (761)
T 4fye_A 505 ALFSYFEEYQKGEGKWD--------QAKLDQLKNQVDGYEKSIKKQESAIYELHNQIDALR 557 (761)
T ss_dssp HHHHHHHHHHSCTTTCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCchh--------HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566664 22222 345677777777777777777666665555444433
No 339
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.86 E-value=1.6e+02 Score=21.51 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013531 118 ADELEKQIDNLKKESEKQ 135 (441)
Q Consensus 118 ~~eLe~eVe~Lkkeie~~ 135 (441)
+.+|+.+|..|+.+...+
T Consensus 24 ~~~LE~~v~~L~~eN~~L 41 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTL 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444443333333
No 340
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=20.57 E-value=4.7e+02 Score=23.57 Aligned_cols=53 Identities=25% Similarity=0.436 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE 169 (441)
Q Consensus 117 ~~~eLe~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELekklEeLek~~aE 169 (441)
+...|...++.|......++.++........+++.+++.+.-.+-.|.+..+.
T Consensus 97 N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~ 149 (170)
T 3l4q_C 97 NSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQ 149 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34445555555555555555555555555555666655555555555544443
No 341
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=20.46 E-value=3.1e+02 Score=21.44 Aligned_cols=7 Identities=29% Similarity=0.349 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 013531 176 KTERALK 182 (441)
Q Consensus 176 elEk~lk 182 (441)
.+++.+.
T Consensus 43 ~lek~L~ 49 (71)
T 1uix_A 43 QFEKQLL 49 (71)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 342
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=20.43 E-value=3.4e+02 Score=27.74 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 013531 78 KEKAIQDKSERIVSLQKELSSLQ 100 (441)
Q Consensus 78 ke~~i~ek~~~I~~l~~ei~sLq 100 (441)
-|+.|..-+..|-+|.+.|..|.
T Consensus 535 yeksikkqesaiyelhnqidalr 557 (761)
T 4fye_A 535 YEKSIKKQESAIYELHNQIDALR 557 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666665
No 343
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=20.37 E-value=8.2e+02 Score=26.28 Aligned_cols=25 Identities=8% Similarity=0.312 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 154 SDLSAKLEKLQKINDEQKSKIRKTE 178 (441)
Q Consensus 154 eELekklEeLek~~aEQk~qIeelE 178 (441)
..+...-++|.....+.+..+++..
T Consensus 574 ~~L~~rw~~L~~~~~~R~~~L~~~l 598 (863)
T 1sjj_A 574 QEINGKWEHVRQLVPRRDQALMEEH 598 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544
No 344
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=20.36 E-value=2.7e+02 Score=23.14 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013531 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSA 158 (441)
Q Consensus 122 e~eVe~Lkkeie~~ek~~eeLEark~eLEkkleELek 158 (441)
...++.|+.+|+.+..++-.|-+++..+-.++..+..
T Consensus 11 ~~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~ 47 (114)
T 3rmi_A 11 LSELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKA 47 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888887777766664
Done!