Query 013534
Match_columns 441
No_of_seqs 258 out of 1307
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 12:23:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.5 8.3E-15 2.8E-19 119.7 5.7 74 18-94 7-81 (92)
2 3fl2_A E3 ubiquitin-protein li 99.5 1.9E-14 6.5E-19 124.2 6.6 76 18-97 46-121 (124)
3 1t1h_A Gspef-atpub14, armadill 99.5 3.7E-14 1.3E-18 112.5 4.6 71 19-94 3-73 (78)
4 2ckl_A Polycomb group ring fin 99.4 9.8E-14 3.4E-18 117.0 4.6 81 15-97 6-87 (108)
5 2kre_A Ubiquitin conjugation f 99.4 9.4E-14 3.2E-18 117.1 4.1 73 18-96 23-95 (100)
6 1z6u_A NP95-like ring finger p 99.4 4.1E-13 1.4E-17 120.6 8.4 75 18-96 72-146 (150)
7 2kr4_A Ubiquitin conjugation f 99.4 1.6E-13 5.6E-18 112.0 4.6 71 19-95 9-79 (85)
8 1wgm_A Ubiquitin conjugation f 99.4 2.4E-13 8.1E-18 114.2 5.5 71 19-95 17-88 (98)
9 2ckl_B Ubiquitin ligase protei 99.4 1.1E-13 3.8E-18 124.9 2.7 81 15-98 45-125 (165)
10 2yu4_A E3 SUMO-protein ligase 99.4 2.3E-13 8E-18 112.9 4.2 74 21-97 4-84 (94)
11 3lrq_A E3 ubiquitin-protein li 99.4 2.6E-13 8.9E-18 113.4 3.6 75 14-92 12-86 (100)
12 2y43_A E3 ubiquitin-protein li 99.3 5.2E-13 1.8E-17 110.7 5.2 75 17-96 15-89 (99)
13 1jm7_B BARD1, BRCA1-associated 99.3 5.6E-13 1.9E-17 114.1 3.9 72 16-94 14-85 (117)
14 3l11_A E3 ubiquitin-protein li 99.3 2.2E-13 7.6E-18 115.8 0.8 76 20-97 11-90 (115)
15 2egp_A Tripartite motif-contai 99.3 1.1E-13 3.9E-18 109.4 -1.9 66 18-87 6-76 (79)
16 2c2l_A CHIP, carboxy terminus 99.3 1E-12 3.5E-17 125.6 4.1 72 20-96 204-275 (281)
17 2yur_A Retinoblastoma-binding 99.3 1.7E-12 5.6E-17 102.6 4.2 54 17-71 8-62 (74)
18 2ecw_A Tripartite motif-contai 99.3 5E-13 1.7E-17 106.3 0.4 68 17-88 12-83 (85)
19 4ayc_A E3 ubiquitin-protein li 99.2 8.7E-13 3E-17 116.2 1.1 67 19-93 48-114 (138)
20 2ecv_A Tripartite motif-contai 99.2 6.7E-13 2.3E-17 105.6 -0.0 67 18-88 13-83 (85)
21 2f42_A STIP1 homology and U-bo 99.2 3.9E-12 1.3E-16 118.1 4.9 72 18-94 100-171 (179)
22 1jm7_A BRCA1, breast cancer ty 99.2 4.1E-12 1.4E-16 106.7 3.6 73 18-94 15-88 (112)
23 2djb_A Polycomb group ring fin 99.2 1.1E-11 3.9E-16 97.0 4.7 55 16-72 7-61 (72)
24 3htk_C E3 SUMO-protein ligase 99.2 5.4E-12 1.9E-16 123.2 3.3 73 17-92 174-248 (267)
25 2ct2_A Tripartite motif protei 99.2 4.4E-12 1.5E-16 101.9 2.1 56 16-72 7-67 (88)
26 2csy_A Zinc finger protein 183 99.2 1.1E-11 3.7E-16 99.1 4.3 61 18-85 9-69 (81)
27 2ysl_A Tripartite motif-contai 99.2 2.4E-11 8.3E-16 94.6 5.3 53 18-71 14-67 (73)
28 3hct_A TNF receptor-associated 99.1 1.2E-11 4.1E-16 106.0 3.3 71 18-93 12-82 (118)
29 2ecy_A TNF receptor-associated 99.1 2.7E-11 9.2E-16 93.2 4.0 52 18-71 9-60 (66)
30 2ysj_A Tripartite motif-contai 99.1 3E-11 1E-15 92.0 4.2 50 17-67 13-63 (63)
31 1rmd_A RAG1; V(D)J recombinati 99.1 4.5E-11 1.5E-15 101.7 4.2 70 19-92 18-87 (116)
32 3knv_A TNF receptor-associated 99.1 2.1E-11 7E-16 108.5 1.7 77 14-92 21-103 (141)
33 2ecj_A Tripartite motif-contai 99.1 7.8E-11 2.7E-15 87.6 4.1 50 17-67 8-58 (58)
34 3hcs_A TNF receptor-associated 99.0 7.8E-11 2.7E-15 106.6 3.1 71 18-93 12-82 (170)
35 2d8t_A Dactylidin, ring finger 99.0 1.4E-10 4.6E-15 90.6 3.3 48 21-71 12-59 (71)
36 1g25_A CDK-activating kinase a 99.0 2.3E-10 8E-15 87.6 3.7 47 23-71 2-53 (65)
37 3ng2_A RNF4, snurf, ring finge 99.0 3.2E-10 1.1E-14 87.6 4.2 48 22-72 8-62 (71)
38 2ea6_A Ring finger protein 4; 99.0 2.2E-10 7.4E-15 87.8 2.9 51 18-71 9-66 (69)
39 1e4u_A Transcriptional repress 98.9 2.1E-09 7.1E-14 86.7 5.5 51 20-72 7-61 (78)
40 2xeu_A Ring finger protein 4; 98.9 8.3E-10 2.8E-14 83.3 2.9 46 23-71 2-54 (64)
41 1bor_A Transcription factor PM 98.9 3.9E-10 1.3E-14 84.7 0.9 45 22-72 4-48 (56)
42 2ecn_A Ring finger protein 141 98.8 7.2E-10 2.5E-14 85.8 1.8 51 18-72 9-59 (70)
43 2ect_A Ring finger protein 126 98.8 1.4E-09 4.9E-14 85.8 3.5 52 18-72 9-63 (78)
44 4ic3_A E3 ubiquitin-protein li 98.8 1.2E-09 4.2E-14 86.4 2.2 48 17-71 17-65 (74)
45 1chc_A Equine herpes virus-1 r 98.8 1.7E-09 5.8E-14 83.1 2.7 49 22-72 3-51 (68)
46 1iym_A EL5; ring-H2 finger, ub 98.8 2.4E-09 8.3E-14 78.9 3.4 49 21-71 2-53 (55)
47 2ecm_A Ring finger and CHY zin 98.8 2.3E-09 8E-14 78.8 2.9 46 23-71 4-53 (55)
48 1v87_A Deltex protein 2; ring- 98.8 2.9E-09 1E-13 89.9 3.7 49 23-72 24-93 (114)
49 2kiz_A E3 ubiquitin-protein li 98.8 4E-09 1.4E-13 81.3 3.8 50 20-72 10-62 (69)
50 4ap4_A E3 ubiquitin ligase RNF 98.7 3.1E-09 1.1E-13 90.7 3.2 47 22-71 5-58 (133)
51 2ep4_A Ring finger protein 24; 98.7 4.9E-09 1.7E-13 81.9 3.4 52 19-72 10-63 (74)
52 2l0b_A E3 ubiquitin-protein li 98.7 4.9E-09 1.7E-13 85.9 3.4 48 21-71 37-87 (91)
53 1x4j_A Ring finger protein 38; 98.7 4.3E-09 1.5E-13 82.7 2.3 48 21-71 20-70 (75)
54 2ecg_A Baculoviral IAP repeat- 98.7 6.3E-09 2.1E-13 82.3 2.6 47 18-71 19-66 (75)
55 2yho_A E3 ubiquitin-protein li 98.6 7E-09 2.4E-13 83.5 0.8 48 18-72 12-60 (79)
56 2y1n_A E3 ubiquitin-protein li 98.5 3.4E-08 1.2E-12 101.3 4.4 51 20-72 328-378 (389)
57 2ecl_A Ring-box protein 2; RNF 98.5 6.5E-08 2.2E-12 77.7 3.9 47 23-71 14-74 (81)
58 4ap4_A E3 ubiquitin ligase RNF 98.4 8E-08 2.7E-12 81.8 2.7 47 22-71 70-123 (133)
59 2bay_A PRE-mRNA splicing facto 98.4 9.4E-08 3.2E-12 73.5 2.5 47 24-72 3-49 (61)
60 1wim_A KIAA0161 protein; ring 98.4 3.7E-08 1.3E-12 80.9 -0.4 48 23-70 4-61 (94)
61 3t6p_A Baculoviral IAP repeat- 98.3 7.5E-08 2.6E-12 97.4 1.1 48 17-71 288-336 (345)
62 3dpl_R Ring-box protein 1; ubi 98.3 3.6E-07 1.2E-11 77.7 3.9 47 23-71 36-99 (106)
63 2ea5_A Cell growth regulator w 98.1 8E-07 2.7E-11 69.5 2.5 44 22-72 13-57 (68)
64 2vje_A E3 ubiquitin-protein li 98.1 1.4E-06 4.7E-11 67.1 2.7 47 23-71 7-55 (64)
65 2vje_B MDM4 protein; proto-onc 98.0 2.2E-06 7.5E-11 65.8 2.7 47 23-71 6-54 (63)
66 4a0k_B E3 ubiquitin-protein li 98.0 1E-06 3.5E-11 76.4 0.1 46 24-71 48-110 (117)
67 2d8s_A Cellular modulator of i 97.9 7.3E-06 2.5E-10 66.2 3.6 49 22-71 13-68 (80)
68 2ct0_A Non-SMC element 1 homol 97.5 0.00012 4.1E-09 58.5 5.7 51 22-72 13-63 (74)
69 3vk6_A E3 ubiquitin-protein li 97.1 0.00027 9.2E-09 59.7 3.7 45 26-71 3-47 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 96.2 0.0025 8.5E-08 48.6 3.0 49 22-71 4-57 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 96.1 0.00086 2.9E-08 68.0 -0.1 51 22-72 306-372 (381)
72 3m62_A Ubiquitin conjugation f 96.1 0.0038 1.3E-07 70.4 4.9 75 18-98 885-960 (968)
73 2jun_A Midline-1; B-BOX, TRIM, 96.0 0.0025 8.5E-08 52.3 2.3 32 23-55 2-36 (101)
74 3nw0_A Non-structural maintena 94.5 0.045 1.5E-06 52.4 5.9 48 24-71 180-227 (238)
75 4fo9_A E3 SUMO-protein ligase 91.7 0.13 4.4E-06 52.3 4.3 71 19-92 210-282 (360)
76 3i2d_A E3 SUMO-protein ligase 91.7 0.12 4.3E-06 52.6 4.3 71 19-92 244-316 (371)
77 2cs3_A Protein C14ORF4, MY039 80.2 0.97 3.3E-05 36.8 2.6 68 22-93 13-87 (93)
78 1weo_A Cellulose synthase, cat 79.4 1.5 5.2E-05 36.2 3.5 45 24-71 16-68 (93)
79 2ko5_A Ring finger protein Z; 70.6 2.3 7.7E-05 35.5 2.4 51 17-71 21-71 (99)
80 4b3n_A Maltose-binding peripla 69.2 0.51 1.7E-05 50.0 -2.2 49 109-161 412-472 (602)
81 2vok_A 52 kDa RO protein; poly 64.6 0.62 2.1E-05 42.8 -2.3 51 108-161 10-64 (188)
82 3kb5_A Tripartite motif-contai 62.8 0.75 2.6E-05 42.3 -2.1 50 109-161 14-68 (193)
83 4gdk_A Ubiquitin-like protein 54.9 9.1 0.00031 31.3 3.3 59 347-406 15-74 (91)
84 3mjh_B Early endosome antigen 52.0 2.5 8.6E-05 28.8 -0.4 18 23-40 4-21 (34)
85 2wl1_A Pyrin, marenostrin; amy 49.3 3 0.0001 38.1 -0.5 50 109-161 15-68 (191)
86 1z60_A TFIIH basal transcripti 49.1 13 0.00044 28.2 3.1 41 25-67 16-58 (59)
87 2fbe_A Predicted: similar to R 46.4 3.5 0.00012 38.2 -0.6 50 109-161 12-65 (201)
88 3a9j_A Ubiquitin; protein comp 34.7 15 0.0005 27.1 1.5 44 356-401 15-58 (76)
89 2r2q_A Gamma-aminobutyric acid 34.6 30 0.001 28.9 3.5 57 348-405 40-96 (110)
90 2xqn_T Testin, TESS; metal-bin 34.4 22 0.00076 29.3 2.7 44 23-71 29-73 (126)
91 1eo6_A GATE-16, golgi-associat 34.1 29 0.00098 29.5 3.3 56 348-405 41-97 (117)
92 1m3v_A FLIN4, fusion of the LI 32.5 24 0.00083 29.3 2.6 47 23-72 31-80 (122)
93 1x61_A Thyroid receptor intera 29.9 39 0.0013 24.9 3.2 34 23-57 32-66 (72)
94 2rgt_A Fusion of LIM/homeobox 29.3 45 0.0016 29.1 4.0 44 23-71 32-75 (169)
95 3dbh_I NEDD8; cell cycle, acti 28.7 25 0.00085 26.8 1.9 46 355-402 26-71 (88)
96 2pv0_B DNA (cytosine-5)-methyl 28.1 19 0.00066 36.8 1.4 29 42-70 112-148 (386)
97 3uv9_A TRIM5alpha, tripartite 28.1 29 0.00099 31.4 2.5 39 109-161 14-52 (186)
98 2lbm_A Transcriptional regulat 28.0 61 0.0021 28.5 4.5 45 24-69 63-116 (142)
99 2cup_A Skeletal muscle LIM-pro 27.7 19 0.00064 28.5 1.0 46 22-71 31-76 (101)
100 3n3k_B Ubiquitin; hydrolase, p 27.7 19 0.00065 27.3 1.0 44 356-401 18-61 (85)
101 2o35_A Hypothetical protein DU 27.7 21 0.00071 30.0 1.3 13 46-58 42-54 (105)
102 2uyz_B Small ubiquitin-related 27.5 24 0.00083 26.5 1.6 46 355-402 17-62 (79)
103 3fyb_A Protein of unknown func 27.5 21 0.00072 29.9 1.3 13 46-58 41-53 (104)
104 3h9d_A ATG8, microtubule-assoc 27.3 33 0.0011 29.3 2.6 58 348-406 44-101 (119)
105 1ndd_A NEDD8, protein (ubiquit 27.2 26 0.00089 25.7 1.7 45 356-402 15-59 (76)
106 3mtn_B UBA80, ubcep1, ubiquiti 26.3 28 0.00094 26.3 1.7 45 356-402 18-62 (85)
107 4eew_A Large proline-rich prot 25.6 25 0.00085 27.1 1.4 44 356-401 32-75 (88)
108 2dzi_A Ubiquitin-like protein 24.8 31 0.001 25.8 1.7 44 356-401 22-65 (81)
109 1yx5_B Ubiquitin; proteasome, 24.3 30 0.001 27.4 1.7 42 360-402 18-59 (98)
110 2ct7_A Ring finger protein 31; 24.3 9.7 0.00033 30.3 -1.3 30 26-55 27-61 (86)
111 3w1s_C Ubiquitin-like protein 24.1 36 0.0012 27.8 2.1 56 347-406 18-74 (91)
112 2dar_A PDZ and LIM domain prot 23.8 43 0.0015 26.1 2.4 33 24-56 51-83 (90)
113 2l4z_A DNA endonuclease RBBP8, 23.6 46 0.0016 27.9 2.8 37 25-71 62-98 (123)
114 3phx_B Ubiquitin-like protein 23.3 33 0.0011 25.7 1.7 44 356-401 19-62 (79)
115 2jtn_A LIM domain-binding prot 23.3 44 0.0015 29.5 2.7 44 23-71 86-129 (182)
116 4hcn_B Polyubiquitin, ubiquiti 23.3 33 0.0011 27.3 1.7 45 355-401 36-80 (98)
117 3rui_B Autophagy-related prote 23.3 33 0.0011 29.3 1.8 58 347-406 42-100 (118)
118 1rut_X Flinc4, fusion protein 23.1 32 0.0011 30.7 1.8 47 22-71 30-79 (188)
119 2d8x_A Protein pinch; LIM doma 22.9 32 0.0011 25.3 1.5 35 23-57 30-64 (70)
120 4dwf_A HLA-B-associated transc 22.5 31 0.0011 26.7 1.4 45 356-402 20-64 (90)
121 1wyw_B Ubiquitin-like protein 22.0 35 0.0012 27.2 1.6 62 329-402 19-80 (97)
122 2zet_C Melanophilin; complex, 21.7 11 0.00037 33.6 -1.6 47 23-70 67-117 (153)
123 3v6c_B Ubiquitin; structural g 21.6 38 0.0013 26.4 1.7 45 355-401 31-75 (91)
124 2bwf_A Ubiquitin-like protein 21.3 39 0.0013 24.9 1.7 44 356-401 18-61 (77)
125 2cur_A Skeletal muscle LIM-pro 20.5 60 0.0021 23.7 2.6 35 23-57 30-64 (69)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.52 E-value=8.3e-15 Score=119.69 Aligned_cols=74 Identities=23% Similarity=0.572 Sum_probs=64.3
Q ss_pred hhcccccccccccccccccceecCC-CCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcC
Q 013534 18 RETIAACMTCPICNTLLRDATTISE-CLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP 94 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~-CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p 94 (441)
.+.+.+.+.|+||+++|.+|+++ + |||+||..||..|+...+...||.||..+ .....+.+|..|.++++.+..
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~--~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQND--VSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSS--CCTTSCEECHHHHHHHHHHHH
T ss_pred cccCCcCCCCCCCChhhcCceEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC--CCccccCcCHHHHHHHHHHHH
Confidence 45678889999999999999999 7 99999999999998765568999999886 345678999999999999954
No 2
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.50 E-value=1.9e-14 Score=124.18 Aligned_cols=76 Identities=25% Similarity=0.583 Sum_probs=65.6
Q ss_pred hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCch
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLKR 97 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~~ 97 (441)
.+.+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. ....||.||..+. ....+++|..|.++++.++|...
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~--~~~~~~~n~~l~~~i~~~~p~~~ 121 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRA-QVFSCPACRYDLG--RSYAMQVNQPLQTVLNQLFPGYG 121 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHT-TCCBCTTTCCBCC--TTCCCCCCHHHHHHHHHHSTTTT
T ss_pred HHhCccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhH-CcCCCCCCCccCC--CCCCCCCCHHHHHHHHHHccccc
Confidence 34567789999999999999999 89999999999999973 4568999999873 33578999999999999998754
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.45 E-value=3.7e-14 Score=112.46 Aligned_cols=71 Identities=21% Similarity=0.344 Sum_probs=61.5
Q ss_pred hcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcC
Q 013534 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP 94 (441)
Q Consensus 19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p 94 (441)
+.+.+.+.|+||+++|.+|+++ +|||+||+.||..|+.. +...||.|+..+ ....+.+|..|+++++.|..
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~---~~~~l~~n~~l~~~i~~~~~ 73 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDA-GHKTCPKSQETL---LHAGLTPNYVLKSLIALWCE 73 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTT-TCCBCTTTCCBC---SSCCCEECTTTHHHHHHHHH
T ss_pred cCCcccCCCCCccccccCCEEc-CCCCeecHHHHHHHHHH-CcCCCCCCcCCC---ChhhCccCHHHHHHHHHHHH
Confidence 3467789999999999999999 79999999999999974 467899999986 34578899999999998853
No 4
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.41 E-value=9.8e-14 Score=116.97 Aligned_cols=81 Identities=36% Similarity=0.766 Sum_probs=67.8
Q ss_pred hhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCC-cCCCCCCCChHHHHHHHHHc
Q 013534 15 KVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGC-VPLEKLRPDHTLQDVRAKIF 93 (441)
Q Consensus 15 ~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~-~~~~~lr~n~~L~~Lv~kl~ 93 (441)
.+..+.+.+.+.|+||+++|.+|+++.+|||+||..||..|+... ..||.|+..+.. .+...+..|..|.++++.++
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 6 RIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS--KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp CEEHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC--SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccchhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC--CcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 456677888999999999999999986899999999999999753 789999998742 12236789999999999998
Q ss_pred CCch
Q 013534 94 PLKR 97 (441)
Q Consensus 94 p~~~ 97 (441)
+...
T Consensus 84 ~~~~ 87 (108)
T 2ckl_A 84 PGLF 87 (108)
T ss_dssp TTHH
T ss_pred hhHH
Confidence 8554
No 5
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.41 E-value=9.4e-14 Score=117.09 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=63.5
Q ss_pred hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK 96 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~ 96 (441)
...+.+.|.||||+++|.+||++ +|||+||+.||..|+.. ...||.|+..+ ....+.+|..|+++++.|...+
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~--~~~cP~~~~~l---~~~~L~pn~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLN--SPTDPFNRQTL---TESMLEPVPELKEQIQAWMREK 95 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTS--CSBCSSSCCBC---CTTSSEECHHHHHHHHHHHHTT
T ss_pred hccCcHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHc--CCCCCCCCCCC---ChhhceECHHHHHHHHHHHHHh
Confidence 34567789999999999999999 79999999999999973 57899999986 3568999999999999996544
No 6
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.40 E-value=4.1e-13 Score=120.63 Aligned_cols=75 Identities=27% Similarity=0.633 Sum_probs=64.4
Q ss_pred hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK 96 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~ 96 (441)
.+.+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. ....||+||..+. ....+.+|..|+++++.|++..
T Consensus 72 ~~~l~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~--~~~~l~~n~~l~~lv~~~~p~~ 146 (150)
T 1z6u_A 72 LKKLEQSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKA-QVFSCPACRHDLG--QNYIMIPNEILQTLLDLFFPGY 146 (150)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHT-TCCBCTTTCCBCC--TTCCCCBCHHHHHHHHHHSTTT
T ss_pred HHhCccCCEeecCChhhcCCEEc-CCCCchhHHHHHHHHHh-CCCcCCCCCccCC--CCCCCCCCHHHHHHHHHHhhHh
Confidence 34567789999999999999999 89999999999999974 4568999999873 2337899999999999998754
No 7
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.39 E-value=1.6e-13 Score=112.01 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=61.8
Q ss_pred hcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCC
Q 013534 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPL 95 (441)
Q Consensus 19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~ 95 (441)
..+.+.|.||||+++|.+||++ +|||+||+.||..|+.. ...||.|+..+ ....+.+|..|+++++.|...
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~--~~~cP~~~~~l---~~~~l~pn~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLN--SPTDPFNRQML---TESMLEPVPELKEQIQAWMRE 79 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH--CSBCTTTCCBC---CGGGCEECHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeEC-CCCCEECHHHHHHHHhc--CCCCCCCcCCC---ChHhcchHHHHHHHHHHHHHH
Confidence 4466789999999999999999 79999999999999974 47899999986 345799999999999998543
No 8
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.39 E-value=2.4e-13 Score=114.22 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=62.2
Q ss_pred hcccccccccccccccccceecCCCC-CcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCC
Q 013534 19 ETIAACMTCPICNTLLRDATTISECL-HTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPL 95 (441)
Q Consensus 19 e~Lee~LtCpIClelf~dPvtLs~Cg-HtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~ 95 (441)
..+.++|.||||+++|.+||++ +|| |+||+.||..|+.. ...||.|+..+ ....+.+|..|+++++.|...
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~--~~~cP~~~~~l---~~~~L~pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLS--DQTDPFNRSPL---TMDQIRPNTELKEKIQRWLAE 88 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTT--SCBCTTTCSBC---CTTTSEECHHHHHHHHHHHHH
T ss_pred hcCcHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHh--CCCCCCCCCCC---ChhhceEcHHHHHHHHHHHHH
Confidence 4467789999999999999999 799 99999999999974 46899999986 356899999999999999543
No 9
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.37 E-value=1.1e-13 Score=124.91 Aligned_cols=81 Identities=32% Similarity=0.735 Sum_probs=63.2
Q ss_pred hhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcC
Q 013534 15 KVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP 94 (441)
Q Consensus 15 ~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p 94 (441)
.+..+.+.+.+.|+||+++|.+|+++.+|||+||..||..|+.. +...||+||..+. ....+.+|..|.+++..+++
T Consensus 45 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~--~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 45 VVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKLV--SKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp C----CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCC--SGGGEEECHHHHHHHHHHC-
T ss_pred ccchhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCC--CcccCCcCHHHHHHHHHHHc
Confidence 34556677889999999999999998789999999999999974 4578999999873 44568899999999999988
Q ss_pred Cchh
Q 013534 95 LKRR 98 (441)
Q Consensus 95 ~~~~ 98 (441)
....
T Consensus 122 ~~~~ 125 (165)
T 2ckl_B 122 SRDE 125 (165)
T ss_dssp ----
T ss_pred chhH
Confidence 6543
No 10
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.3e-13 Score=112.85 Aligned_cols=74 Identities=20% Similarity=0.364 Sum_probs=61.4
Q ss_pred ccccccccccccccccceecCCCCCcchHHHHHHhhccC----CCCCCCC--CCcc-CCCcCCCCCCCChHHHHHHHHHc
Q 013534 21 IAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDE----EIECCPV--CNID-LGCVPLEKLRPDHTLQDVRAKIF 93 (441)
Q Consensus 21 Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~----~~~~CP~--CR~~-l~~~~~~~lr~n~~L~~Lv~kl~ 93 (441)
..+.|.||||+++|.+||++..|||+||+.||..|+... ....||+ |+.. + ....|.+|..|.+++..+.
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l---~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDI---RKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCB---CGGGEEECHHHHHHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccccc---CHhhCcCCHHHHHHHHHHH
Confidence 356799999999999999993499999999999999753 2478999 9865 4 3467899999999999996
Q ss_pred CCch
Q 013534 94 PLKR 97 (441)
Q Consensus 94 p~~~ 97 (441)
....
T Consensus 81 ~~~~ 84 (94)
T 2yu4_A 81 KKRH 84 (94)
T ss_dssp TTCC
T ss_pred HHhc
Confidence 5544
No 11
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.35 E-value=2.6e-13 Score=113.42 Aligned_cols=75 Identities=28% Similarity=0.503 Sum_probs=61.8
Q ss_pred hhhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHH
Q 013534 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKI 92 (441)
Q Consensus 14 ~~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl 92 (441)
.....+.|.+.+.|+||+++|.+|+++..|||+||..||..|+... ...||.||..+ ....+..+..+.++++.+
T Consensus 12 ~~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~---~~~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 12 DEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPL---QLRELVNCRWAEEVTQQL 86 (100)
T ss_dssp HHHHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBC---CGGGCEECTTHHHHHHHH
T ss_pred cccccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcC---CHHHhHhhHHHHHHHHHH
Confidence 3446677888999999999999999933899999999999999753 36899999986 345677788888887776
No 12
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.35 E-value=5.2e-13 Score=110.69 Aligned_cols=75 Identities=24% Similarity=0.507 Sum_probs=63.5
Q ss_pred hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013534 17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK 96 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~ 96 (441)
..+.+.+.+.|+||++.|.+|+++.+|||+||..||..|+.. ...||.||..+. ...+.+|..|.++++.+....
T Consensus 15 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~---~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTVT---EPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp GGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCC---GGGCEECHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcCC---hhhCCcCHHHHHHHHHHHHHH
Confidence 455677889999999999999988679999999999999974 478999999863 356889999999999985443
No 13
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=5.6e-13 Score=114.11 Aligned_cols=72 Identities=24% Similarity=0.588 Sum_probs=62.4
Q ss_pred hhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcC
Q 013534 16 VKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP 94 (441)
Q Consensus 16 v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p 94 (441)
...+.|.+.+.|+||+++|.+|+++.+|||+||..||..|+. ..||+|+..+ ....+.+|..|.+++..+..
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~---~~~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPA---WIQDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp HHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBC---SCSSCCCCHHHHHHHHHHHH
T ss_pred HHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcC---ccccccccHHHHHHHHHHHH
Confidence 355667889999999999999999866999999999999986 5799999986 45678999999999998843
No 14
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.31 E-value=2.2e-13 Score=115.84 Aligned_cols=76 Identities=22% Similarity=0.521 Sum_probs=63.4
Q ss_pred cccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCC----cCCCCCCCChHHHHHHHHHcCC
Q 013534 20 TIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGC----VPLEKLRPDHTLQDVRAKIFPL 95 (441)
Q Consensus 20 ~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~----~~~~~lr~n~~L~~Lv~kl~p~ 95 (441)
.+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. +...||.||..+.. .....+..|..|.+++.++++.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCT-TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred CCCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhH-CcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 455679999999999999999 89999999999999864 45789999998641 1235677899999999999976
Q ss_pred ch
Q 013534 96 KR 97 (441)
Q Consensus 96 ~~ 97 (441)
..
T Consensus 89 ~~ 90 (115)
T 3l11_A 89 EC 90 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 15
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.29 E-value=1.1e-13 Score=109.37 Aligned_cols=66 Identities=32% Similarity=0.770 Sum_probs=53.0
Q ss_pred hhcccccccccccccccccceecCCCCCcchHHHHHHhhccC-----CCCCCCCCCccCCCcCCCCCCCChHHHH
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDE-----EIECCPVCNIDLGCVPLEKLRPDHTLQD 87 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~-----~~~~CP~CR~~l~~~~~~~lr~n~~L~~ 87 (441)
.+.+.+.+.|+||++.|.+|+++ +|||+||..||..|+... ....||.||..+. ...+++|..|++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~---~~~l~~n~~l~~ 76 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS---FEHLQANQHLAN 76 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC---SSGGGTCSSSCC
T ss_pred HhhcccCCCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC---HhhCCcCHHHHH
Confidence 34577889999999999999999 899999999999998752 2579999998863 345666665543
No 16
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.29 E-value=1e-12 Score=125.62 Aligned_cols=72 Identities=21% Similarity=0.240 Sum_probs=61.3
Q ss_pred cccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013534 20 TIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK 96 (441)
Q Consensus 20 ~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~ 96 (441)
.+...+.||||+++|.+||++ +|||+||+.||..|+... ...||+|+..+ ....+.+|..|.++++.|...+
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~-~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~---~~~~l~~n~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRV-GHFNPVTRSPL---TQEQLIPNLAMKEVIDAFISEN 275 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHHT-CSSCTTTCCCC---CGGGCEECHHHHHHHHHHHTTC
T ss_pred CCCcccCCcCcCCHhcCCeEC-CCCCEECHHHHHHHHHHC-CCCCcCCCCCC---chhcCcccHHHHHHHHHHHHHC
Confidence 345789999999999999999 799999999999999753 34599999986 3457899999999999996543
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.28 E-value=1.7e-12 Score=102.59 Aligned_cols=54 Identities=26% Similarity=0.740 Sum_probs=47.7
Q ss_pred hhhcccccccccccccccccceecCC-CCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 17 KRETIAACMTCPICNTLLRDATTISE-CLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~-CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
..+.+.+.+.|+||+++|.+|+++ + |||+||..||..|+...+...||+||..+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred ccccCCCCCCCcCCChHHhCCeEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 456678889999999999999999 7 99999999999999865557899999874
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.26 E-value=5e-13 Score=106.29 Aligned_cols=68 Identities=34% Similarity=0.806 Sum_probs=54.4
Q ss_pred hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccC----CCCCCCCCCccCCCcCCCCCCCChHHHHH
Q 013534 17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDE----EIECCPVCNIDLGCVPLEKLRPDHTLQDV 88 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~----~~~~CP~CR~~l~~~~~~~lr~n~~L~~L 88 (441)
..+.+.+.+.|+||++.|.+|+.+ +|||+||..||..|+... ....||.|+..+ ....+.+|..|+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~---~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY---PFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC---CTTCCEECSCCCSS
T ss_pred HHHhCccCCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC---CHHhCCcCHHHHHh
Confidence 345578889999999999999998 799999999999998763 268999999886 34456666655443
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.25 E-value=8.7e-13 Score=116.16 Aligned_cols=67 Identities=25% Similarity=0.621 Sum_probs=52.1
Q ss_pred hcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHc
Q 013534 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIF 93 (441)
Q Consensus 19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~ 93 (441)
+.+.++++|+||+++|.+|+++ +|||+||..||..|+.. ...||.||..+. ....+..+..++..++
T Consensus 48 ~~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~-----~~~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 48 DVLENELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKR--KIECPICRKDIK-----SKTYSLVLDNCINKMV 114 (138)
T ss_dssp HHHHHHSBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTT--CSBCTTTCCBCC-----CEEECHHHHHHHHHHH
T ss_pred HhccccCCCcccCcccCCceEC-CCCCCccHHHHHHHHHc--CCcCCCCCCcCC-----CCCCccchhHHHHHHH
Confidence 3456779999999999999999 89999999999999864 478999998763 2223455555555553
No 20
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.7e-13 Score=105.55 Aligned_cols=67 Identities=30% Similarity=0.768 Sum_probs=54.3
Q ss_pred hhcccccccccccccccccceecCCCCCcchHHHHHHhhcc----CCCCCCCCCCccCCCcCCCCCCCChHHHHH
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD----EEIECCPVCNIDLGCVPLEKLRPDHTLQDV 88 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~----~~~~~CP~CR~~l~~~~~~~lr~n~~L~~L 88 (441)
.+.+.+.+.|+||++.|.+|+.+ +|||+||..||..|+.. .+...||.||..+. ...+.+|..|+++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~---~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ---PENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC---SSSCCCSCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC---HHhcCccHHHHHh
Confidence 45578889999999999999999 89999999999999875 24689999998863 4566677665443
No 21
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.24 E-value=3.9e-12 Score=118.07 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=62.3
Q ss_pred hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcC
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP 94 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p 94 (441)
...+.+.|.||||+++|.+||++ +|||+||+.||..|+...+ ..||.|+..+ ....+.+|..|.+++..+..
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~-~tcP~t~~~l---~~~~L~pN~~Lk~~Ie~~~~ 171 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVG-HFDPVTRSPL---TQDQLIPNLAMKEVIDAFIQ 171 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTC-SBCTTTCCBC---CGGGCEECHHHHHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCC-CCCCCCcCCC---ChhhCcchHHHHHHHHHHHH
Confidence 45577899999999999999999 8999999999999997533 3799999986 34579999999999999853
No 22
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=4.1e-12 Score=106.74 Aligned_cols=73 Identities=21% Similarity=0.642 Sum_probs=58.4
Q ss_pred hhcccccccccccccccccceecCCCCCcchHHHHHHhhccC-CCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcC
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDE-EIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFP 94 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~-~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p 94 (441)
.+.+.+.+.|+||++.|.+|+++ +|||+||..||..|+... +...||.|+..+. ...+..|..+.++++.+..
T Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~---~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 15 INAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT---KRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC---TTTCBCCCSSSHHHHHHHH
T ss_pred HHhccCCCCCcccChhhcCeEEC-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC---HhhcCccHHHHHHHHHHHH
Confidence 34566789999999999999998 899999999999998753 3468999999863 4566667777777776654
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=96.99 Aligned_cols=55 Identities=42% Similarity=0.831 Sum_probs=48.0
Q ss_pred hhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013534 16 VKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 16 v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
...+.+.+.+.|+||++.|.+|+++.+|||+||..||..|+.. ...||+||..+.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 61 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVH 61 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccC
Confidence 3556678899999999999999998689999999999999964 478999998863
No 24
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.19 E-value=5.4e-12 Score=123.20 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=63.0
Q ss_pred hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCC--CCccCCCcCCCCCCCChHHHHHHHHH
Q 013534 17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPV--CNIDLGCVPLEKLRPDHTLQDVRAKI 92 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~--CR~~l~~~~~~~lr~n~~L~~Lv~kl 92 (441)
..+.....++||||+++|.+||++..|||+||+.||..|+...+...||+ |+..+ ....|++|..|.++++.+
T Consensus 174 ~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l---~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 174 QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV---SMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp CCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE---CGGGEEECHHHHHHHHHH
T ss_pred eecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcC---chhhCCcCHHHHHHHHHH
Confidence 33446788999999999999998657999999999999997655679999 99875 467899999999999887
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=4.4e-12 Score=101.93 Aligned_cols=56 Identities=23% Similarity=0.626 Sum_probs=48.1
Q ss_pred hhhhccccccccccccccccc----ceecCCCCCcchHHHHHHhhccC-CCCCCCCCCccCC
Q 013534 16 VKRETIAACMTCPICNTLLRD----ATTISECLHTFCRKCIYDKISDE-EIECCPVCNIDLG 72 (441)
Q Consensus 16 v~~e~Lee~LtCpIClelf~d----PvtLs~CgHtFC~~CI~~~l~~~-~~~~CP~CR~~l~ 72 (441)
...+.+.+.+.|+||++.|.+ |+.+ +|||+||..||..|+... ....||.||..+.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 7 GNLDALREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCCCCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cChhhccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 455677889999999999999 9999 899999999999998753 3478999998864
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=99.08 Aligned_cols=61 Identities=23% Similarity=0.600 Sum_probs=50.1
Q ss_pred hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHH
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTL 85 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L 85 (441)
.+.....+.|+||++.|.+|+++ +|||+||..||..|+.. ...||+||..+. ..+.++..|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~----~~~~~~~~l 69 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVT-KCRHYFCESCALEHFRA--TPRCYICDQPTG----GIFNPAKEL 69 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEEC-TTSCEEEHHHHHHHHHH--CSBCSSSCCBCC----SCCEECHHH
T ss_pred cccCCCCCCCcCCCchhcCeeEc-cCCCHhHHHHHHHHHHC--CCcCCCcCcccc----ccCCcHHHH
Confidence 34567789999999999999998 89999999999999964 468999998863 456666444
No 27
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.4e-11 Score=94.63 Aligned_cols=53 Identities=32% Similarity=0.730 Sum_probs=46.2
Q ss_pred hhcccccccccccccccccceecCCCCCcchHHHHHHhhcc-CCCCCCCCCCccC
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD-EEIECCPVCNIDL 71 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~-~~~~~CP~CR~~l 71 (441)
.+.+.+.+.|+||++.|.+|+++ +|||+||..||..|+.. .....||+||..+
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 45577889999999999999999 89999999999999863 2457899999876
No 28
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.15 E-value=1.2e-11 Score=105.95 Aligned_cols=71 Identities=32% Similarity=0.565 Sum_probs=58.8
Q ss_pred hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHc
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIF 93 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~ 93 (441)
.+.+.+.+.|+||+++|.+|+++ +|||+||..||..|+... ...||+||..+. ...+.++..+..++..+.
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~---~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDA-GHKCPVDNEILL---ENQLFPDNFAKREILSLM 82 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHH-CSBCTTTCCBCC---GGGCEECHHHHHHHHTSE
T ss_pred ccCCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhC-CCCCCCCCCCcC---HHhcccCHHHHHHHccce
Confidence 45678899999999999999999 799999999999998753 348999999863 345668888888777763
No 29
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.7e-11 Score=93.17 Aligned_cols=52 Identities=25% Similarity=0.613 Sum_probs=45.5
Q ss_pred hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.+.+.+.+.|+||++.+.+|+.+ .|||+||..||..|+. .....||+||..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLS-SSSPKCTACQESI 60 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCC-SSSCCCCHHHHHHHHT-TSSCCCTTTCCCC
T ss_pred hhcCCcCCCCCCCChHhcCeeEC-CCCCHHHHHHHHHHHH-hCcCCCCCCCcCC
Confidence 34567889999999999999998 8999999999999996 3457899999876
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3e-11 Score=91.96 Aligned_cols=50 Identities=34% Similarity=0.735 Sum_probs=43.3
Q ss_pred hhhcccccccccccccccccceecCCCCCcchHHHHHHhhcc-CCCCCCCCC
Q 013534 17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD-EEIECCPVC 67 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~-~~~~~CP~C 67 (441)
..+.+.+.+.|+||++.|.+|+++ +|||+||..||..|+.. .....||+|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345678889999999999999999 89999999999999973 245789998
No 31
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.09 E-value=4.5e-11 Score=101.70 Aligned_cols=70 Identities=23% Similarity=0.537 Sum_probs=54.0
Q ss_pred hcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHH
Q 013534 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKI 92 (441)
Q Consensus 19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl 92 (441)
+.+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. ....||.||..+... .-...+..+.+++..+
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~--~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVET-SCKHLFCRICILRCLKV-MGSYCPSCRYPCFPT--DLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCGG--GCBCCCHHHHHHHHHC
T ss_pred HhccCCCCCCCCCcHhcCcEEc-CCCCcccHHHHHHHHhH-CcCcCCCCCCCCCHh--hccccHHHHHHHHHHh
Confidence 3456679999999999999998 89999999999999975 246899999987421 2223466666666555
No 32
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.08 E-value=2.1e-11 Score=108.55 Aligned_cols=77 Identities=18% Similarity=0.373 Sum_probs=57.8
Q ss_pred hhhhhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCc------CCCCCCCChHHHH
Q 013534 14 VKVKRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCV------PLEKLRPDHTLQD 87 (441)
Q Consensus 14 ~~v~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~------~~~~lr~n~~L~~ 87 (441)
..+-.+.+++.+.|+||+++|.+|+++ .|||+||..||..|+.. +...||+||..+... ....+.++..+..
T Consensus 21 ~~~~~~~l~~~~~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~ 98 (141)
T 3knv_A 21 KTLLGTKLEAKYLCSACRNVLRRPFQA-QCGHRYCSFCLASILSS-GPQNCAACVHEGIYEEGISILESSSAFPDNAARR 98 (141)
T ss_dssp GGGTGGGCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHGGG-SCEECHHHHHTTCCCTTTTEECGGGCEECHHHHH
T ss_pred hhhhhccCCcCcCCCCCChhhcCcEEC-CCCCccCHHHHHHHHhc-CCCCCCCCCCcccccccccccchhhhcccHHHHH
Confidence 334456788999999999999999998 89999999999999874 446899999864211 1123446666666
Q ss_pred HHHHH
Q 013534 88 VRAKI 92 (441)
Q Consensus 88 Lv~kl 92 (441)
.+..+
T Consensus 99 ~i~~L 103 (141)
T 3knv_A 99 EVESL 103 (141)
T ss_dssp HHHTS
T ss_pred HHccc
Confidence 66555
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.8e-11 Score=87.62 Aligned_cols=50 Identities=36% Similarity=0.777 Sum_probs=42.9
Q ss_pred hhhcccccccccccccccccceecCCCCCcchHHHHHHhhcc-CCCCCCCCC
Q 013534 17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISD-EEIECCPVC 67 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~-~~~~~CP~C 67 (441)
..+.+.+.+.|+||++.|.+|+.+ +|||+||..||..|+.. .....||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCC-SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeC-CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345577889999999999999998 89999999999999763 345789998
No 34
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.02 E-value=7.8e-11 Score=106.58 Aligned_cols=71 Identities=32% Similarity=0.565 Sum_probs=58.2
Q ss_pred hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHc
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIF 93 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~ 93 (441)
.+.+.+.+.|+||+++|.+|+++ +|||+||..||..|+.. ....||.||..+. ...+.++..+.+++..+.
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~---~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRD-AGHKCPVDNEILL---ENQLFPDNFAKREILSLM 82 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHH-HCSBCTTTCCBCC---GGGCEECHHHHHHHHTSE
T ss_pred ccCCCCCCCCCCCChhhcCcEEC-CCCCHHHHHHHHHHHHh-CCCCCCCCccCcc---hhhhhhhHHHHHHHhhcc
Confidence 45688899999999999999998 89999999999999874 2348999998863 334667878877777663
No 35
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.4e-10 Score=90.57 Aligned_cols=48 Identities=21% Similarity=0.552 Sum_probs=42.8
Q ss_pred ccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 21 IAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 21 Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
..+.+.|+||++.|.+|+.+ +|||+||..||..|+... ..||+||..+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~ 59 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWLG--KRCALCRQEI 59 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTCS--SBCSSSCCBC
T ss_pred CCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHCC--CcCcCcCchh
Confidence 35678999999999999999 799999999999998743 7899999875
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=2.3e-10 Score=87.60 Aligned_cols=47 Identities=30% Similarity=0.641 Sum_probs=40.3
Q ss_pred cccccccccc-ccccce----ecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 23 ACMTCPICNT-LLRDAT----TISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpICle-lf~dPv----tLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
+++.|+||++ +|.+|+ .+ +|||+||..||..|+.. ....||.||..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~ 53 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVR-GAGNCPECGTPL 53 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEEC-TTCCCEEHHHHHHHHHT-TSSSCTTTCCCC
T ss_pred CCCcCCcCCCCccCCCccCeecC-CCCCHhHHHHHHHHHHc-CCCcCCCCCCcc
Confidence 3589999999 999994 55 89999999999999764 457899999886
No 37
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.97 E-value=3.2e-10 Score=87.59 Aligned_cols=48 Identities=29% Similarity=0.879 Sum_probs=42.0
Q ss_pred cccccccccccccccc-------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013534 22 AACMTCPICNTLLRDA-------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 22 ee~LtCpIClelf~dP-------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
.+.+.|+||++.|.+| +.+ +|||+||..||..|+... ..||+||..+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 62 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA--NTCPTCRKKIN 62 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcC--CCCCCCCCccC
Confidence 5679999999999998 677 899999999999998753 68999998863
No 38
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=2.2e-10 Score=87.78 Aligned_cols=51 Identities=27% Similarity=0.776 Sum_probs=43.9
Q ss_pred hhcccccccccccccccccc-------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 18 RETIAACMTCPICNTLLRDA-------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dP-------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.+.+.+.+.|+||++.|.+| +.+ +|||.||..||..|+.. ...||+||..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 66 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKI 66 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH--CSSCTTTCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc--CCCCCCCCCcc
Confidence 34567789999999999998 677 89999999999999875 46899999875
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.86 E-value=2.1e-09 Score=86.69 Aligned_cols=51 Identities=27% Similarity=0.558 Sum_probs=40.8
Q ss_pred cccccccccccccccc--cceecCC--CCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013534 20 TIAACMTCPICNTLLR--DATTISE--CLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 20 ~Lee~LtCpIClelf~--dPvtLs~--CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
.++++++||||++.+. +++.+ + |||+||+.|+..++.. ....||.||..+.
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~-p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFF-PCTCGYQICRFCWHRIRTD-ENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCC-SSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCS
T ss_pred ccccCCcCCccCccCcccccccc-ccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccC
Confidence 4677899999999874 34443 4 9999999999988754 5689999998863
No 40
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.86 E-value=8.3e-10 Score=83.28 Aligned_cols=46 Identities=33% Similarity=0.911 Sum_probs=40.4
Q ss_pred ccccccccccccccc-------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 23 ACMTCPICNTLLRDA-------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpIClelf~dP-------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
+.+.|+||++.|.+| +.+ +|||.||..||..|+.. ...||.||..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 54 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKI 54 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc--CCCCCCCCccC
Confidence 468999999999988 667 89999999999999875 46899999886
No 41
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=3.9e-10 Score=84.68 Aligned_cols=45 Identities=24% Similarity=0.651 Sum_probs=39.1
Q ss_pred cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013534 22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
.+.+.|+||++.|.+|+++ +|||+||..||.. ....||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEA-----SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSS-----SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEc-CCCCcccHHHHcc-----CCCCCCcCCcEee
Confidence 5679999999999999999 7999999999876 2367999998763
No 42
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=7.2e-10 Score=85.79 Aligned_cols=51 Identities=27% Similarity=0.670 Sum_probs=44.0
Q ss_pred hhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
.+.+.+.+.|+||++.+.+ +.+ +|||.||..||..|+. ....||+||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~-~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LIL-PCAHSFCQKCIDKWSD--RHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEE-TTTEEECHHHHHHSSC--CCSSCHHHHHCTT
T ss_pred hhcCCCCCCCeeCCcCccC-ccc-CCCCcccHHHHHHHHH--CcCcCCCcCCccc
Confidence 3456778999999999999 777 8999999999999986 4578999998763
No 43
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.83 E-value=1.4e-09 Score=85.80 Aligned_cols=52 Identities=27% Similarity=0.683 Sum_probs=42.7
Q ss_pred hhcccccccccccccccccc---eecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013534 18 RETIAACMTCPICNTLLRDA---TTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dP---vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
.+.+...+.|+||++.|.++ +.+ +|+|.||..||..|+.. ...||+||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 63 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQ--HDSCPVCRKSLT 63 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTT--TCSCTTTCCCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHc--CCcCcCcCCccC
Confidence 44567789999999999865 334 79999999999999964 368999998863
No 44
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.80 E-value=1.2e-09 Score=86.43 Aligned_cols=48 Identities=21% Similarity=0.512 Sum_probs=42.0
Q ss_pred hhhcccccccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013534 17 KRETIAACMTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
..+.+.+.+.|+||++.+.+|+++ +|||. ||..|+..| ..||+||..+
T Consensus 17 ~~~~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~CP~Cr~~i 65 (74)
T 4ic3_A 17 QLRRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV------DKCPMCYTVI 65 (74)
T ss_dssp HHHHHHHHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC------SBCTTTCCBC
T ss_pred HHhcCccCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC------ccCCCcCcCc
Confidence 344567789999999999999999 89999 999999876 5699999876
No 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.80 E-value=1.7e-09 Score=83.08 Aligned_cols=49 Identities=31% Similarity=0.720 Sum_probs=40.8
Q ss_pred cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013534 22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
.....|+||++.+.+|+.+.+|||.||..||..|+.. ...||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhH
Confidence 3467899999999998544489999999999999864 368999998763
No 46
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.79 E-value=2.4e-09 Score=78.87 Aligned_cols=49 Identities=24% Similarity=0.663 Sum_probs=41.3
Q ss_pred cccccccccccccccc---ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 21 IAACMTCPICNTLLRD---ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 21 Lee~LtCpIClelf~d---PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
+++...|+||++.|.+ ++.+..|||.||..||..|+.. ...||+||..+
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEe
Confidence 4567899999999987 7777349999999999999864 46899999764
No 47
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.78 E-value=2.3e-09 Score=78.83 Aligned_cols=46 Identities=26% Similarity=0.624 Sum_probs=39.2
Q ss_pred cccccccccccccc----ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 23 ACMTCPICNTLLRD----ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpIClelf~d----PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
....|+||++.|.+ ++.+ +|||.||..||..|+... ..||+||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKEG--YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHHT--CCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHcC--CcCCCCCCcC
Confidence 45789999999966 6666 899999999999999754 7899999765
No 48
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.77 E-value=2.9e-09 Score=89.87 Aligned_cols=49 Identities=27% Similarity=0.532 Sum_probs=40.1
Q ss_pred ccccccccccccccce------------------ecCCCCCcchHHHHHHhhcc---CCCCCCCCCCccCC
Q 013534 23 ACMTCPICNTLLRDAT------------------TISECLHTFCRKCIYDKISD---EEIECCPVCNIDLG 72 (441)
Q Consensus 23 e~LtCpIClelf~dPv------------------tLs~CgHtFC~~CI~~~l~~---~~~~~CP~CR~~l~ 72 (441)
.+..|+||++.|.+|. .+ +|+|.||..||..|+.. .....||+||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLT-KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEES-SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecC-CCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3469999999997765 44 89999999999999953 23578999998864
No 49
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.76 E-value=4e-09 Score=81.34 Aligned_cols=50 Identities=26% Similarity=0.733 Sum_probs=40.6
Q ss_pred cccccccccccccccc---cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013534 20 TIAACMTCPICNTLLR---DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 20 ~Lee~LtCpIClelf~---dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
.......|+||++.|. .++.+ +|||.||..||..|+... ..||+||..+.
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITN--KKCPICRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHC--SBCTTTCSBSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcC--CCCcCcCcccc
Confidence 3456789999999885 44566 899999999999998753 57999998763
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.75 E-value=3.1e-09 Score=90.69 Aligned_cols=47 Identities=30% Similarity=0.894 Sum_probs=41.8
Q ss_pred cccccccccccccccc-------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 22 AACMTCPICNTLLRDA-------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf~dP-------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.+.+.|+||++.|.+| +.+ +|||+||..||..|+... ..||+|+..+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~ 58 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA--NTCPTCRKKI 58 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTC--SBCTTTCCBC
T ss_pred CCCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhC--CCCCCCCCcC
Confidence 4579999999999999 788 899999999999999743 5899999886
No 51
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=4.9e-09 Score=81.91 Aligned_cols=52 Identities=23% Similarity=0.642 Sum_probs=42.1
Q ss_pred hcccccccccccccccccceec--CCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013534 19 ETIAACMTCPICNTLLRDATTI--SECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 19 e~Lee~LtCpIClelf~dPvtL--s~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
+.+.....|+||++.|.++..+ .+|+|.||..||..|+... ..||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~~ 63 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--KVCPLCNMPVL 63 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--SBCTTTCCBCS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--CcCCCcCcccc
Confidence 4456789999999999766433 2799999999999999753 58999998863
No 52
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.72 E-value=4.9e-09 Score=85.90 Aligned_cols=48 Identities=31% Similarity=0.700 Sum_probs=41.3
Q ss_pred cccccccccccccccc---ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 21 IAACMTCPICNTLLRD---ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 21 Lee~LtCpIClelf~d---PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
..+...|+||++.|.. ++.+ +|||.||..||..|+.. ...||+||..+
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~ 87 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQK--SGTCPVCRCMF 87 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTT--TCBCTTTCCBS
T ss_pred cCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHc--CCcCcCcCccC
Confidence 4567899999999877 7777 79999999999999964 46899999875
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=4.3e-09 Score=82.68 Aligned_cols=48 Identities=23% Similarity=0.609 Sum_probs=41.2
Q ss_pred ccccccccccccccccc---eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 21 IAACMTCPICNTLLRDA---TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 21 Lee~LtCpIClelf~dP---vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
..+...|+||++.|..+ +.+ +|+|.||..||..|+... ..||+||..+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~ 70 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKAN--RTCPICRADS 70 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHHC--SSCTTTCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHcC--CcCcCcCCcC
Confidence 45678999999999887 666 799999999999998753 6899999876
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=6.3e-09 Score=82.31 Aligned_cols=47 Identities=21% Similarity=0.512 Sum_probs=40.2
Q ss_pred hhcccccccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.+.+.+.+.|+||++.+.+|+.+ +|||. ||..|+... ..||+||..+
T Consensus 19 ~~~~~~~~~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~~------~~CP~Cr~~i 66 (75)
T 2ecg_A 19 LRRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV------DKCPMCYTVI 66 (75)
T ss_dssp HHHHHHHHSCSSSCSSCCCBCCS-SSCCCCBCHHHHHHC------SBCTTTCCBC
T ss_pred HHcCCCCCCCCcCCCCCCCEEEe-cCCCHHHHHHHhhCC------CCCccCCcee
Confidence 34456779999999999999999 89999 999999642 5699999876
No 55
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.60 E-value=7e-09 Score=83.49 Aligned_cols=48 Identities=27% Similarity=0.619 Sum_probs=41.0
Q ss_pred hhcccccccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccCC
Q 013534 18 RETIAACMTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
.+.+.+...|+||++.+.+++.+ +|||. ||..|+..+ ..||+||..+.
T Consensus 12 ~~~l~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~------~~CP~Cr~~i~ 60 (79)
T 2yho_A 12 LRKLKEAMLCMVCCEEEINSTFC-PCGHTVCCESCAAQL------QSCPVCRSRVE 60 (79)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTC------SBCTTTCCBCC
T ss_pred HHcCCCCCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhc------CcCCCCCchhh
Confidence 34556678999999999999999 89999 999999765 26999998864
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.55 E-value=3.4e-08 Score=101.32 Aligned_cols=51 Identities=24% Similarity=0.539 Sum_probs=43.5
Q ss_pred cccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013534 20 TIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 20 ~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
.......|+||++.+.+|+.+ +|||.||..||..|+.. ....||.||..+.
T Consensus 328 ~~~~~~~C~ICle~~~~pv~l-pCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 328 MGSTFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQES-EGQGCPFCRCEIK 378 (389)
T ss_dssp TTTSSSBCTTTSSSBCCEEEE-TTCCEECHHHHHHHHHH-TCSBCTTTCCBCC
T ss_pred hcCCCCCCCccCcCCCCeEEe-CCCChhhHHHHHHHHhc-CCCCCCCCCCccC
Confidence 344558999999999999999 89999999999999863 3468999998863
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=6.5e-08 Score=77.70 Aligned_cols=47 Identities=32% Similarity=0.757 Sum_probs=38.9
Q ss_pred cccccccccccccc--------------ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 23 ACMTCPICNTLLRD--------------ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpIClelf~d--------------PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
+...|+||++.|.+ ++.+..|+|.||..||..|+... ..||+||..+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~ 74 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--NRCPLCQQDW 74 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--CBCTTTCCBC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--CCCCCcCCCc
Confidence 45779999999976 55554699999999999999753 6899999875
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.42 E-value=8e-08 Score=81.84 Aligned_cols=47 Identities=30% Similarity=0.889 Sum_probs=41.3
Q ss_pred cccccccccccccccc-------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 22 AACMTCPICNTLLRDA-------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf~dP-------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.+.+.|+||++.|.++ +.+ +|||.||..||..|+.. ...||+||..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~ 123 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN--ANTCPTCRKKI 123 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH--CSBCTTTCCBC
T ss_pred CCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc--CCCCCCCCCcC
Confidence 4678999999999987 777 89999999999999975 46899999876
No 59
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.40 E-value=9.4e-08 Score=73.54 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=40.8
Q ss_pred cccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013534 24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
.|.||||+++|.+||.+..|||+||+.||..|+... ..||+++..+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~--~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC--CCCcCCcCCCC
Confidence 489999999999999985699999999999999754 45999998863
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=3.7e-08 Score=80.91 Aligned_cols=48 Identities=19% Similarity=0.468 Sum_probs=39.0
Q ss_pred ccccccccccccccceec--CCCCCcchHHHHHHhhccC---C---CCCCCC--CCcc
Q 013534 23 ACMTCPICNTLLRDATTI--SECLHTFCRKCIYDKISDE---E---IECCPV--CNID 70 (441)
Q Consensus 23 e~LtCpIClelf~dPvtL--s~CgHtFC~~CI~~~l~~~---~---~~~CP~--CR~~ 70 (441)
+.++|+||++.+..|..+ .+|||.||..||..++... + ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 468999999999988764 3699999999998887642 2 368999 9976
No 61
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.35 E-value=7.5e-08 Score=97.41 Aligned_cols=48 Identities=23% Similarity=0.531 Sum_probs=42.0
Q ss_pred hhhcccccccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013534 17 KRETIAACMTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
..+.+.+.+.|+||++.+.+|+.+ +|||. ||..|+..+ ..||+||..+
T Consensus 288 ~~~~l~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~------~~CP~CR~~i 336 (345)
T 3t6p_A 288 QLRRLQEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL------RKCPICRGII 336 (345)
T ss_dssp HHHHHHTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC------SBCTTTCCBC
T ss_pred HHHhCcCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC------CcCCCCCCCc
Confidence 345567889999999999999999 89999 999999866 4699999876
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.30 E-value=3.6e-07 Score=77.69 Aligned_cols=47 Identities=26% Similarity=0.547 Sum_probs=39.0
Q ss_pred ccccccccccccccc-----------------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 23 ACMTCPICNTLLRDA-----------------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpIClelf~dP-----------------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
+...|+||++.|.++ +.+.+|+|.|+..||..|+.. ...||+||..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcc
Confidence 457899999999866 444489999999999999974 57899999874
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=8e-07 Score=69.46 Aligned_cols=44 Identities=23% Similarity=0.626 Sum_probs=38.0
Q ss_pred cccccccccccccccceecCCCCCc-chHHHHHHhhccCCCCCCCCCCccCC
Q 013534 22 AACMTCPICNTLLRDATTISECLHT-FCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
.+...|+||++.+.+++.+ +|||. ||..|+.. ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~------~~~CP~CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLL-PCRHTCLCDGCVKY------FQQCPMCRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCCCCEET-TTTBCCSCTTHHHH------CSSCTTTCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEE-CCCChhhhHHHHhc------CCCCCCCCcchh
Confidence 3478999999999999999 89999 99999984 256999998763
No 64
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.08 E-value=1.4e-06 Score=67.11 Aligned_cols=47 Identities=23% Similarity=0.491 Sum_probs=39.5
Q ss_pred ccccccccccccccceec-CCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013534 23 ACMTCPICNTLLRDATTI-SECLHT-FCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpIClelf~dPvtL-s~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
+...|+||++.+.+++.+ .+|||. ||..|+..+... ...||+||..+
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i 55 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPI 55 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcch
Confidence 457899999999999864 279999 899999988863 36799999875
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.01 E-value=2.2e-06 Score=65.78 Aligned_cols=47 Identities=23% Similarity=0.550 Sum_probs=38.9
Q ss_pred ccccccccccccccceec-CCCCCc-chHHHHHHhhccCCCCCCCCCCccC
Q 013534 23 ACMTCPICNTLLRDATTI-SECLHT-FCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpIClelf~dPvtL-s~CgHt-FC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
....|+||++.+.+++.+ .+|||. ||..|+..+... ...||+||..+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i 54 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEI 54 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchh
Confidence 357899999999998754 369998 999999988754 36799999875
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.97 E-value=1e-06 Score=76.38 Aligned_cols=46 Identities=26% Similarity=0.558 Sum_probs=0.4
Q ss_pred cccccccccccccc-----------------eecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 24 CMTCPICNTLLRDA-----------------TTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClelf~dP-----------------vtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.-.|+||++.|.++ +.+.+|+|.||..||..|+.. ...||+||..+
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW 110 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCee
Confidence 36899999999763 333479999999999999975 47899999764
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=7.3e-06 Score=66.21 Aligned_cols=49 Identities=20% Similarity=0.580 Sum_probs=40.4
Q ss_pred ccccccccccccc--ccceecCCCC-----CcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 22 AACMTCPICNTLL--RDATTISECL-----HTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf--~dPvtLs~Cg-----HtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.+...|.||++-+ .+++.+ +|. |.|...||..|+.......||+|+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEEC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CCCCCCeEcCccccCCCeeEe-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 3457899999877 467766 896 999999999999865557899999886
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.53 E-value=0.00012 Score=58.52 Aligned_cols=51 Identities=24% Similarity=0.459 Sum_probs=41.2
Q ss_pred cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013534 22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
+..-.|.||..+|..-..-..|+|.|-..||.+|+.......||+|+..+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 345789999999975554446999999999999998655578999998753
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.13 E-value=0.00027 Score=59.67 Aligned_cols=45 Identities=22% Similarity=0.537 Sum_probs=35.9
Q ss_pred cccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 26 TCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 26 tCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.|++|.-.+..-..+.+|.|.||.+|+..|... +...||.|+..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhc-cCCCCcCcCCee
Confidence 689998877655555589999999999888753 457899999875
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.23 E-value=0.0025 Score=48.57 Aligned_cols=49 Identities=20% Similarity=0.440 Sum_probs=39.0
Q ss_pred cccccccccccccccceecCCCCC-----cchHHHHHHhhccCCCCCCCCCCccC
Q 013534 22 AACMTCPICNTLLRDATTISECLH-----TFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgH-----tFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
++...|.||+.-..++..+ +|.+ .|-..||..|+...+...||+|+..+
T Consensus 4 ~~~~~CrIC~~~~~~~l~~-PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEECSCCCCC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCEeEEeecCCCCceec-CcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 3457899999877777655 7654 78999999999865668999999875
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.14 E-value=0.00086 Score=68.04 Aligned_cols=51 Identities=20% Similarity=0.454 Sum_probs=38.5
Q ss_pred ccccccccccccccc----cee---cCCCCCcchHHHHHHhhccCC---------CCCCCCCCccCC
Q 013534 22 AACMTCPICNTLLRD----ATT---ISECLHTFCRKCIYDKISDEE---------IECCPVCNIDLG 72 (441)
Q Consensus 22 ee~LtCpIClelf~d----Pvt---Ls~CgHtFC~~CI~~~l~~~~---------~~~CP~CR~~l~ 72 (441)
+....|+||+.++.+ |.. ...|+|.|...||.+|+.... ...||.|+..+.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456789999999876 322 125999999999999996421 147999998864
No 72
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.11 E-value=0.0038 Score=70.37 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=63.1
Q ss_pred hhcccccccccccccccccceecCCCC-CcchHHHHHHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHcCCc
Q 013534 18 RETIAACMTCPICNTLLRDATTISECL-HTFCRKCIYDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIFPLK 96 (441)
Q Consensus 18 ~e~Lee~LtCpIClelf~dPvtLs~Cg-HtFC~~CI~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~p~~ 96 (441)
...+-++|.|||-++++.+||++ +.| +||-+.+|.+|+.. ..+||.=|.++. ...+.+|+.|+..|+.|...+
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~--~~tdP~Tr~~L~---~~~liPN~~Lk~~I~~w~~~~ 958 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLS--DSTDPFNRMPLK---LEDVTPNEELRQKILCFKKQK 958 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTT--CCBCTTTCCBCC---GGGCEECHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhc--CCCCCCCCCCCC---cccccccHHHHHHHHHHHHHH
Confidence 34567789999999999999999 787 69999999999975 468999998863 456889999999999997655
Q ss_pred hh
Q 013534 97 RR 98 (441)
Q Consensus 97 ~~ 98 (441)
.+
T Consensus 959 ~~ 960 (968)
T 3m62_A 959 KE 960 (968)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.04 E-value=0.0025 Score=52.30 Aligned_cols=32 Identities=22% Similarity=0.723 Sum_probs=27.7
Q ss_pred cccccccccc-cccccee--cCCCCCcchHHHHHHh
Q 013534 23 ACMTCPICNT-LLRDATT--ISECLHTFCRKCIYDK 55 (441)
Q Consensus 23 e~LtCpICle-lf~dPvt--Ls~CgHtFC~~CI~~~ 55 (441)
+++.|+||.+ ++.+|+. + .|+|+||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~-~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCV-TCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEET-TTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECC-cCChHHhHHHCHHH
Confidence 4689999996 5788988 7 79999999999873
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.54 E-value=0.045 Score=52.43 Aligned_cols=48 Identities=23% Similarity=0.484 Sum_probs=39.5
Q ss_pred cccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
...|.||.+++..-+.=..|+|.|-..|+..|+.......||.|+...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 577999999987655443499999999999999765667999999764
No 75
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=91.68 E-value=0.13 Score=52.32 Aligned_cols=71 Identities=18% Similarity=0.362 Sum_probs=54.8
Q ss_pred hcccccccccccccccccceecCCCCCcchHHHH--HHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHH
Q 013534 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCI--YDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKI 92 (441)
Q Consensus 19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI--~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl 92 (441)
..+.-.|.|||-...|..|+.-..|.|.-|++-. ...........||+|...+ ....|+.|..+.+++...
T Consensus 210 ~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~---~~~dL~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 210 TSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA---AYESLILDGLFMEILNDC 282 (360)
T ss_dssp CCEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC---CGGGEEEBHHHHHHHTTC
T ss_pred eeeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCccc---CHHHeEEcHHHHHHHHhC
Confidence 3455679999999999999999899999665543 3333334668999999884 567899999998887653
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.68 E-value=0.12 Score=52.58 Aligned_cols=71 Identities=24% Similarity=0.465 Sum_probs=54.4
Q ss_pred hcccccccccccccccccceecCCCCCcchHHHH--HHhhccCCCCCCCCCCccCCCcCCCCCCCChHHHHHHHHH
Q 013534 19 ETIAACMTCPICNTLLRDATTISECLHTFCRKCI--YDKISDEEIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKI 92 (441)
Q Consensus 19 e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI--~~~l~~~~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl 92 (441)
..+.-.|.|||-...|..|+.-..|.|.-|++-. ...........||+|...+ ....|+.|..+.+++...
T Consensus 244 ~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~---~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 244 TSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI---ALENLAISEFVDDILQNC 316 (371)
T ss_dssp CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC---CGGGEEEBHHHHHHHTTS
T ss_pred eeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc---CHHHeeEcHHHHHHHHhc
Confidence 3445679999999999999999899999776553 3333334679999999874 567888999888876543
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=80.18 E-value=0.97 Score=36.80 Aligned_cols=68 Identities=25% Similarity=0.453 Sum_probs=42.8
Q ss_pred cccccccccccccccceecCCC----CCcchHHHHHHhhccC---CCCCCCCCCccCCCcCCCCCCCChHHHHHHHHHc
Q 013534 22 AACMTCPICNTLLRDATTISEC----LHTFCRKCIYDKISDE---EIECCPVCNIDLGCVPLEKLRPDHTLQDVRAKIF 93 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~C----gHtFC~~CI~~~l~~~---~~~~CP~CR~~l~~~~~~~lr~n~~L~~Lv~kl~ 93 (441)
...+.|.+|.+-|.+.... .| +|.||..|-..+++.+ ....||.-..- .-...-.+-..++.-|..++
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kC---pL~gS~~PWAFmqgEIatIL 87 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKC---PLVGSNVPWAFMQGEIATIL 87 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCC---BCSSSSSBCCCCHHHHHHHH
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHhcCCCCcEECCCCCcc---ccCCCcCchHHHhhHHHHHh
Confidence 4568999999999887766 46 7999999998887653 23566654321 11122234444555555554
No 78
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.36 E-value=1.5 Score=36.21 Aligned_cols=45 Identities=31% Similarity=0.575 Sum_probs=33.0
Q ss_pred cccccccccc--------cccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 24 CMTCPICNTL--------LRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 24 ~LtCpIClel--------f~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.-+|.||.+- ++-+.. .|+...|+.|..- .+.++...||.|+..+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~--eC~FPvCrpCyEY-ErkeG~q~CpqCktrY 68 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACN--ECGFPACRPCYEY-ERREGTQNCPQCKTRY 68 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCS--SSCCCCCHHHHHH-HHHTSCSSCTTTCCCC
T ss_pred CCccccccCccccCCCCCEEEeee--ccCChhhHHHHHH-HHhccCccccccCCcc
Confidence 4689999987 333322 5898999999754 3445778999999775
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=70.56 E-value=2.3 Score=35.54 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=38.8
Q ss_pred hhhcccccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 17 KRETIAACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 17 ~~e~Lee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
....+-.-+.|..|..-.+.-|. ...|-+|..|+...+.. ...||+|...|
T Consensus 21 ~d~s~~G~~nCKsCWf~~k~LV~--C~dHYLCl~CLtlmL~~--SdrCpIC~~pL 71 (99)
T 2ko5_A 21 PDATHLGPQFCKSCWFENKGLVE--CNNHYLCLNCLTLLLSV--SNRCPICKMPL 71 (99)
T ss_dssp SSCCCSCCCCCCSSCSCCSSEEE--CSSCEEEHHHHHHTCSS--SSEETTTTEEC
T ss_pred CCccccCcccChhhccccCCeee--ecchhhHHHHHHHHHhh--ccCCcccCCcC
Confidence 44455667889999877775544 36788999999888864 46899999886
No 80
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=69.22 E-value=0.51 Score=49.98 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=32.8
Q ss_pred cccCccccCcccccceeccCCcccccccccccc--------hHHHHHH----HHhhcCCCCCCCC
Q 013534 109 VTLPVRRKERSLSSLVVSAPRVSAQTTMTRRRS--------NAAARKA----AALRGSNLSTDKP 161 (441)
Q Consensus 109 vtLd~krKetAlSsLvvs~d~~sv~~g~~~rr~--------~~~~~ra----~alr~~~~~~~~~ 161 (441)
+|||+ +||+ .|+||+|+++|+++...+.. ..+++|+ ..|..++|+.+++
T Consensus 412 vtldp---~ta~-~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~~~~VLg~~~f~sGrh 472 (602)
T 4b3n_A 412 VTLAT---NNIS-HAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNYCTGVLGSQSITSGKH 472 (602)
T ss_dssp CCEEC---CSCC-SCEECTTSSEEECCCC--------------------CCCCEEESSCBSSSEE
T ss_pred EEeCC---CCCC-ceeEecCCCEEEECCccccccCCCccCCCCCcccCCCCCEeccCCCCCCEEE
Confidence 99999 9998 59999999999998764432 1244554 4677788888776
No 81
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=64.57 E-value=0.62 Score=42.82 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=42.2
Q ss_pred ccccCccccCcccccceeccCCcccccccccccchHHHHHH----HHhhcCCCCCCCC
Q 013534 108 SVTLPVRRKERSLSSLVVSAPRVSAQTTMTRRRSNAAARKA----AALRGSNLSTDKP 161 (441)
Q Consensus 108 ~vtLd~krKetAlSsLvvs~d~~sv~~g~~~rr~~~~~~ra----~alr~~~~~~~~~ 161 (441)
.++||+ ++|++.|++|+|.+++.++...+..+..|+|+ .+|-.++|+.++.
T Consensus 10 ~vtLDp---~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrH 64 (188)
T 2vok_A 10 HITLDR---NTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKM 64 (188)
T ss_dssp CCCBCG---GGSCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSSSEE
T ss_pred ceEECC---ccCCCCeEECCCCCEEEECCccCCCCCCccceeeeccccccCcccCCCe
Confidence 389999 99999999999999999998888887777774 4566677776655
No 82
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=62.75 E-value=0.75 Score=42.25 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=41.6
Q ss_pred cccCccccCcccccceeccCCccccccccc-ccchHHHHHH----HHhhcCCCCCCCC
Q 013534 109 VTLPVRRKERSLSSLVVSAPRVSAQTTMTR-RRSNAAARKA----AALRGSNLSTDKP 161 (441)
Q Consensus 109 vtLd~krKetAlSsLvvs~d~~sv~~g~~~-rr~~~~~~ra----~alr~~~~~~~~~ 161 (441)
++||+ ++|++.|++|+|.+++.++... +..+.+|+|+ ..|..++|+.++.
T Consensus 14 vtLDp---~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrh 68 (193)
T 3kb5_A 14 LTFDP---SSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLSEGEH 68 (193)
T ss_dssp CCBCT---TTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCSSSCEEEBSCCBCSSEE
T ss_pred EEECC---CCCCCCEEECCCCCEEEECCcCCCCCCCCccccccccEEccCCcccCCCE
Confidence 89999 9999999999999999999887 7777777774 4666677776655
No 83
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=54.94 E-value=9.1 Score=31.29 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=46.7
Q ss_pred CCCCCCcceeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCc-cccCCCcchhHHHHH
Q 013534 347 PLPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQ-PVIPTLQLYNLVDLW 406 (441)
Q Consensus 347 ~lpqi~~~y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~-~~~~~~~l~~~~~~w 406 (441)
.+|+|-+.=.-| .+.++|+.+..+|-++|.|..|.-+-+.+.+. +..|..++.+|.+..
T Consensus 15 ~~P~l~k~KflV-p~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~ 74 (91)
T 4gdk_A 15 DTPIMKTKKWAV-ERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECF 74 (91)
T ss_dssp SSCCCSCCEEEE-ETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHH
T ss_pred CCCcccccEEEc-CCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHh
Confidence 477787765555 56889999999999999999999999998764 335567888887765
No 84
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=51.96 E-value=2.5 Score=28.80 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=13.6
Q ss_pred ccccccccccccccceec
Q 013534 23 ACMTCPICNTLLRDATTI 40 (441)
Q Consensus 23 e~LtCpIClelf~dPvtL 40 (441)
+.|+||+|+..|..+-.|
T Consensus 4 EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEEECTTTCCEESSHHHH
T ss_pred cccCCcHHHHHcCCHHHH
Confidence 358899998888777655
No 85
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=49.29 E-value=3 Score=38.14 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=40.9
Q ss_pred cccCccccCcccccceeccCCcccccccccccchHHHHHH----HHhhcCCCCCCCC
Q 013534 109 VTLPVRRKERSLSSLVVSAPRVSAQTTMTRRRSNAAARKA----AALRGSNLSTDKP 161 (441)
Q Consensus 109 vtLd~krKetAlSsLvvs~d~~sv~~g~~~rr~~~~~~ra----~alr~~~~~~~~~ 161 (441)
++||+ ++|++.|++|+|.+++.++...+..+..|+|+ .+|-..+|+.++.
T Consensus 15 ~tLDp---~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrH 68 (191)
T 2wl1_A 15 VILDA---ETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLSGRR 68 (191)
T ss_dssp CEECT---TTSCTTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBCSSEE
T ss_pred eEECC---ccCCCceEECCCCcEEEECCcCCCCCCCcccccccccccCcccccCCCE
Confidence 89999 99999999999999999998888777777774 3556667766655
No 86
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=49.13 E-value=13 Score=28.18 Aligned_cols=41 Identities=27% Similarity=0.682 Sum_probs=27.5
Q ss_pred ccccccccccccce--ecCCCCCcchHHHHHHhhccCCCCCCCCC
Q 013534 25 MTCPICNTLLRDAT--TISECLHTFCRKCIYDKISDEEIECCPVC 67 (441)
Q Consensus 25 LtCpIClelf~dPv--tLs~CgHtFC~~CI~~~l~~~~~~~CP~C 67 (441)
..|--|+..|.+.. .=..|.+.||.+|= .++ .+..-.||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fi-He~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFV-HDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH-HTT-TTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchh-HHH-HhhccCCcCC
Confidence 45888888775433 12269999999993 233 3455689988
No 87
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=46.44 E-value=3.5 Score=38.18 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=41.3
Q ss_pred cccCccccCcccccceeccCCcccccccccccchHHHHHH----HHhhcCCCCCCCC
Q 013534 109 VTLPVRRKERSLSSLVVSAPRVSAQTTMTRRRSNAAARKA----AALRGSNLSTDKP 161 (441)
Q Consensus 109 vtLd~krKetAlSsLvvs~d~~sv~~g~~~rr~~~~~~ra----~alr~~~~~~~~~ 161 (441)
++||+ ++|++.|++|+|.+++.++...+..+.+++|+ .+|-..+|+.++.
T Consensus 12 ~tLDp---~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrH 65 (201)
T 2fbe_A 12 MTFDV---DTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRH 65 (201)
T ss_dssp CCEET---TTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEE
T ss_pred EEECc---ccCCCceEECCCCcEEEECCccCCCCCCccceeeccceecCccccCCce
Confidence 89999 99999999999999999998888877777774 3566677776655
No 88
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=34.73 E-value=15 Score=27.07 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=34.0
Q ss_pred eeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchh
Q 013534 356 LRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 356 ~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~ 401 (441)
+.+ +.+.+|.-||..|..+.|+..+ +.-+.+.|+.+....+|.+
T Consensus 15 i~v-~~~~tv~~lK~~i~~~~~i~~~-~q~L~~~g~~L~d~~tL~~ 58 (76)
T 3a9j_A 15 LEV-EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSD 58 (76)
T ss_dssp EEC-CTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTCBTGG
T ss_pred EEE-CCCCcHHHHHHHHHHHHCcCHH-HeEEEECCeECCCCCcHHH
Confidence 444 3578999999999999999865 5578888988766666554
No 89
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=34.59 E-value=30 Score=28.92 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=43.1
Q ss_pred CCCCCcceeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhHHHH
Q 013534 348 LPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDL 405 (441)
Q Consensus 348 lpqi~~~y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~~~~ 405 (441)
+|.|-..=.-| .+.++|.-+..+|.+.|+|..+.-+-+.|.|.-..++.++.+|-+.
T Consensus 40 ~p~l~k~KflV-p~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~ 96 (110)
T 2r2q_A 40 VPDLDKRKYLV-PSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYED 96 (110)
T ss_dssp SCCCSCCEEEE-ETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHH
T ss_pred CCccceeEEEe-CCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHH
Confidence 66665433333 3478999999999999999999989999988766666677776664
No 90
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=34.40 E-value=22 Score=29.35 Aligned_cols=44 Identities=16% Similarity=0.453 Sum_probs=34.0
Q ss_pred cccccccccccccc-ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 23 ACMTCPICNTLLRD-ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpIClelf~d-PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
+.|.|..|...|.. +... .=|..||..|....+. ..|..|...+
T Consensus 29 ~CF~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~~~----~~C~~C~~~I 73 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVM-VNDKPVCKPCYVKNHA----VVCQGCHNAI 73 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEE-ETTEEEEHHHHHHHSC----CBCTTTCSBC
T ss_pred CCCCcCCCCCCCCcCEEEe-ECCEEechHHhCcCcC----ccCcccCCcC
Confidence 57999999998875 3333 5688899999877654 4699999876
No 91
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=34.10 E-value=29 Score=29.45 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=42.8
Q ss_pred CCCCCc-ceeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhHHHH
Q 013534 348 LPQISS-SYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDL 405 (441)
Q Consensus 348 lpqi~~-~y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~~~~ 405 (441)
+|.|-. .|| | .+.++|.-+..+|.+.|.|..+.-+-+.|.|.-..++.++.+|.+.
T Consensus 41 ~p~l~k~Kfl-V-p~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~ 97 (117)
T 1eo6_A 41 IVDIDKRKYL-V-PSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEK 97 (117)
T ss_dssp SCCCSCCEEE-E-ETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHH
T ss_pred CCcccceEEE-c-CCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHH
Confidence 666654 444 3 3488999999999999999999999898888755556666666654
No 92
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.49 E-value=24 Score=29.27 Aligned_cols=47 Identities=13% Similarity=0.238 Sum_probs=35.2
Q ss_pred ccccccccccccc---cceecCCCCCcchHHHHHHhhccCCCCCCCCCCccCC
Q 013534 23 ACMTCPICNTLLR---DATTISECLHTFCRKCIYDKISDEEIECCPVCNIDLG 72 (441)
Q Consensus 23 e~LtCpIClelf~---dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l~ 72 (441)
++|.|..|...|. ..... .=+..||..|....+... -.|-.|...+.
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~cy~~~f~~~--~~C~~C~~~I~ 80 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNS--GAGGSGGHMGS 80 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEE-ETTEEECHHHHHHHHCCC--CSSSCSSCCSC
T ss_pred hCCCcCCCCCcccccCCeEEE-ECCeeecHHHHHHHcCCC--CccccCCCCcC
Confidence 5799999999986 23444 467889999998877532 26999998763
No 93
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.92 E-value=39 Score=24.89 Aligned_cols=34 Identities=21% Similarity=0.607 Sum_probs=24.2
Q ss_pred ccccccccccccccc-eecCCCCCcchHHHHHHhhc
Q 013534 23 ACMTCPICNTLLRDA-TTISECLHTFCRKCIYDKIS 57 (441)
Q Consensus 23 e~LtCpIClelf~dP-vtLs~CgHtFC~~CI~~~l~ 57 (441)
++|.|..|...|..- ... .=+..||..|..+.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYA-VERRAYCEGCYVATLE 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEE-SSSCEEEHHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEe-eCCeEECHHHHHHHHc
Confidence 468888998877543 333 4577889999877664
No 94
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=29.30 E-value=45 Score=29.09 Aligned_cols=44 Identities=16% Similarity=0.630 Sum_probs=34.3
Q ss_pred ccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 23 ACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
++|.|..|...|..-... .=|..||..|....+. ..|..|...+
T Consensus 32 ~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f~----~~C~~C~~~I 75 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFG----TKCAACQLGI 75 (169)
T ss_dssp TTSBCTTTCCBCCSCCEE-SSSCEECHHHHHHHHS----CBCTTTCCBC
T ss_pred ccCccCCCCCcCCCCCcc-cCCeeeeccccccccc----cccccccccc
Confidence 689999999988654444 4688899999987765 4699998765
No 95
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=28.69 E-value=25 Score=26.83 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=36.6
Q ss_pred eeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhH
Q 013534 355 YLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNL 402 (441)
Q Consensus 355 y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~ 402 (441)
.|.|. .+.+|.-||..|..+.|+..+.+ -|.+.|+++....+|.++
T Consensus 26 ~~~v~-~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~ 71 (88)
T 3dbh_I 26 EIDIE-PTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQMNDEKTAADY 71 (88)
T ss_dssp EEEEC-TTCBHHHHHHHHHHHHCCCGGGC-CEEETTEECCTTSBGGGG
T ss_pred EEEEC-CCCCHHHHHHHHHHHHCcCHHHE-EEEECCeECCCCCcHHHc
Confidence 35554 68899999999999999986654 788899988777777654
No 96
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=28.11 E-value=19 Score=36.75 Aligned_cols=29 Identities=17% Similarity=0.556 Sum_probs=22.0
Q ss_pred CCCCcchHHHHHHhhcc--------CCCCCCCCCCcc
Q 013534 42 ECLHTFCRKCIYDKISD--------EEIECCPVCNID 70 (441)
Q Consensus 42 ~CgHtFC~~CI~~~l~~--------~~~~~CP~CR~~ 70 (441)
.|...||..||...+.. .....|=+|.-.
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 48889999999877643 245889999854
No 97
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=28.06 E-value=29 Score=31.37 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=29.7
Q ss_pred cccCccccCcccccceeccCCcccccccccccchHHHHHHHHhhcCCCCCCCC
Q 013534 109 VTLPVRRKERSLSSLVVSAPRVSAQTTMTRRRSNAAARKAAALRGSNLSTDKP 161 (441)
Q Consensus 109 vtLd~krKetAlSsLvvs~d~~sv~~g~~~rr~~~~~~ra~alr~~~~~~~~~ 161 (441)
+|||+ ++|+. |++|+|+++|+..... ..|-..+|+.++.
T Consensus 14 vTLDp---~TA~~-l~lSed~r~Vr~~~~~----------~VLG~~~ftsGrH 52 (186)
T 3uv9_A 14 VTLAT---NNISH-AVIAEDKRQVSSRAGT----------GVLGSQSITSGKH 52 (186)
T ss_dssp CCCCC---CSSCC-CEECTTSSCEECCCSS----------CEECSSCBCSSEE
T ss_pred eEeCC---CCcCC-ceECCCCCEEeecCCC----------cCcCCCCCCCCCE
Confidence 99999 99985 9999999999653221 3667777777666
No 98
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=27.99 E-value=61 Score=28.54 Aligned_cols=45 Identities=22% Similarity=0.498 Sum_probs=28.5
Q ss_pred cccccccccccccceecCCCCCcchHHHHHHhhc---------cCCCCCCCCCCc
Q 013534 24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKIS---------DEEIECCPVCNI 69 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~---------~~~~~~CP~CR~ 69 (441)
+..|.+|.+-=.=-.-- .|-..||..||...+. ..+...||.|..
T Consensus 63 ~d~C~vC~~GG~LlcCD-~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCD-FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECS-SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCC-CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45677775521100001 4888999999985542 346789999984
No 99
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=27.71 E-value=19 Score=28.53 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=32.6
Q ss_pred cccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 22 AACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.+.|.|..|...|........=+..||..|....+. ..|..|...+
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~----~~C~~C~~~I 76 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS----PKCKGCFKAI 76 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC----CBCSSSCCBC
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcC----CccccCCCcc
Confidence 357999999998865422224577899999765442 5699998775
No 100
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=27.71 E-value=19 Score=27.28 Aligned_cols=44 Identities=11% Similarity=0.232 Sum_probs=34.3
Q ss_pred eeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchh
Q 013534 356 LRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 356 ~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~ 401 (441)
|+| +.+.+|.-||..|..+.++..+.+ -|.+.|+++....+|.+
T Consensus 18 ~~v-~~~~tV~~lK~~i~~~~~ip~~~q-rL~~~g~~L~d~~tL~~ 61 (85)
T 3n3k_B 18 LEV-EPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSD 61 (85)
T ss_dssp EEC-CTTCBHHHHHHHHHHHHCCCGGGE-EEEETBEECCTTCBTTT
T ss_pred EEE-CCCCcHHHHHHHHHHHHCCCHHHE-EEEECCeECCCCCCHHH
Confidence 444 357899999999999999987654 67889988777666654
No 101
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=27.69 E-value=21 Score=30.02 Aligned_cols=13 Identities=31% Similarity=0.917 Sum_probs=11.6
Q ss_pred cchHHHHHHhhcc
Q 013534 46 TFCRKCIYDKISD 58 (441)
Q Consensus 46 tFC~~CI~~~l~~ 58 (441)
-||+.|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999875
No 102
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=27.54 E-value=24 Score=26.51 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=37.5
Q ss_pred eeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhH
Q 013534 355 YLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNL 402 (441)
Q Consensus 355 y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~ 402 (441)
.+.|. .+.+|.-|++.+..+.|+..+ +.-+...|+++....+|.++
T Consensus 17 ~~~v~-~~~tv~~lk~~i~~~~gi~~~-~qrL~~~G~~L~d~~tl~~~ 62 (79)
T 2uyz_B 17 HFKVK-MTTHLKKLKESYCQRQGVPMN-SLRFLFEGQRIADNHTPKEL 62 (79)
T ss_dssp EEEEE-TTSCTHHHHHHHHHHHTCCGG-GEEEEETTEECCTTCCHHHH
T ss_pred EEEEC-CCChHHHHHHHHHHHHCCCcc-cEEEEECCEEeCCCCCHHHc
Confidence 46665 578999999999999999876 55678899999988776654
No 103
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=27.50 E-value=21 Score=29.94 Aligned_cols=13 Identities=31% Similarity=0.953 Sum_probs=11.5
Q ss_pred cchHHHHHHhhcc
Q 013534 46 TFCRKCIYDKISD 58 (441)
Q Consensus 46 tFC~~CI~~~l~~ 58 (441)
.||+.|+..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999874
No 104
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=27.28 E-value=33 Score=29.29 Aligned_cols=58 Identities=10% Similarity=0.156 Sum_probs=45.1
Q ss_pred CCCCCcceeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhHHHHH
Q 013534 348 LPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLW 406 (441)
Q Consensus 348 lpqi~~~y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~~~~w 406 (441)
+|.|-+.-.- -...++|.-+..+|-+.|.|..+.-+-+.+.+....++.++.+|.+..
T Consensus 44 ~P~Ldk~Kfl-Vp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~ 101 (119)
T 3h9d_A 44 IGELDRCKFL-VPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKY 101 (119)
T ss_dssp CCCCSSCEEE-EETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHH
T ss_pred CCccCcceEE-cCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHc
Confidence 6777655432 366899999999999999999999899999887555567777776654
No 105
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=27.21 E-value=26 Score=25.67 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=34.8
Q ss_pred eeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhH
Q 013534 356 LRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNL 402 (441)
Q Consensus 356 ~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~ 402 (441)
+.+ +.+.+|.-||..|..+.|+..+ ..-+.+.|+++....+|.+.
T Consensus 15 ~~v-~~~~tv~~lK~~i~~~~~i~~~-~q~L~~~g~~L~d~~tL~~~ 59 (76)
T 1ndd_A 15 IDI-EPTDKVERIKERVEEKEGIPPQ-QQRLIYSGKQMNDEKTAADY 59 (76)
T ss_dssp EEC-CTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTSBGGGG
T ss_pred EEE-CCCChHHHHHHHHHHHHCcChH-HEEEEECCEECCCCCcHHHc
Confidence 444 3578999999999999999865 45678899988777666543
No 106
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=26.27 E-value=28 Score=26.26 Aligned_cols=45 Identities=11% Similarity=0.216 Sum_probs=35.4
Q ss_pred eeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhH
Q 013534 356 LRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNL 402 (441)
Q Consensus 356 ~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~ 402 (441)
++|. .+.+|.-||..|..+.++..+.+ -|.+.|+.+....+|.++
T Consensus 18 ~~v~-~~~tV~~lK~~i~~~~~i~~~~q-rL~~~g~~L~d~~tL~~~ 62 (85)
T 3mtn_B 18 LEVE-PSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY 62 (85)
T ss_dssp EEEC-TTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTGGG
T ss_pred EEEC-CCCCHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCCHHHc
Confidence 4553 57899999999999999987654 677899988777766653
No 107
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=25.62 E-value=25 Score=27.11 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=35.9
Q ss_pred eeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchh
Q 013534 356 LRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 356 ~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~ 401 (441)
+.| +.+.+|.-||..|..+.|+..+.+ -|.+.|+.+.-..+|.+
T Consensus 32 ~~v-~~~~tV~~lK~~i~~~~gip~~~q-rLi~~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 32 FIV-GAQMNVKEFKEHIAASVSIPSEKQ-RLIYQGRVLQDDKKLQE 75 (88)
T ss_dssp EEE-ETTCBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGG
T ss_pred EEE-CCCCCHHHHHHHHHHHhCCCHHHE-EEEECCEECCCCCcHHH
Confidence 555 467899999999999999988776 67889998877766654
No 108
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.78 E-value=31 Score=25.81 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=34.0
Q ss_pred eeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchh
Q 013534 356 LRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 356 ~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~ 401 (441)
+.+ +.+.+|.-||+.|..+.|+..+ ..-+.+.|+++....+|.+
T Consensus 22 ~~v-~~~~tV~~LK~~i~~~~~i~~~-~qrL~~~gk~L~d~~tL~~ 65 (81)
T 2dzi_A 22 LQV-PEDELVSTLKQLVSEKLNVPVR-QQRLLFKGKALADGKRLSD 65 (81)
T ss_dssp EEE-CSSCBHHHHHHHHHHHTCCCTT-TCEEEETTEECCTTSBGGG
T ss_pred EEE-CCCCcHHHHHHHHHHHHCcCHH-HEEEEECCeECCCCCcHHH
Confidence 454 4578999999999999999866 4457788988876666654
No 109
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=24.33 E-value=30 Score=27.36 Aligned_cols=42 Identities=10% Similarity=0.170 Sum_probs=33.6
Q ss_pred CCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhH
Q 013534 360 DRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNL 402 (441)
Q Consensus 360 d~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~ 402 (441)
+.+.+|.-||+.|..+.|+..+ ..-|.+.|+++....+|.++
T Consensus 18 ~~~~TV~~LK~~I~~~~gi~~~-~qrL~~~Gk~L~D~~tL~~~ 59 (98)
T 1yx5_B 18 EPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 59 (98)
T ss_dssp CTTCBHHHHHHHHHHHTCCCGG-GEEEEETTEECCTTSBTGGG
T ss_pred CCCCcHHHHHHHHHHHHCcChh-hEEEEECCEECCCCCCHHHc
Confidence 3468999999999999999876 45677899988777666543
No 110
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=24.29 E-value=9.7 Score=30.29 Aligned_cols=30 Identities=27% Similarity=0.550 Sum_probs=19.6
Q ss_pred cccccccccc-----cceecCCCCCcchHHHHHHh
Q 013534 26 TCPICNTLLR-----DATTISECLHTFCRKCIYDK 55 (441)
Q Consensus 26 tCpIClelf~-----dPvtLs~CgHtFC~~CI~~~ 55 (441)
-||-|...+. .+++=..|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3998877553 12333248899998887665
No 111
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=24.12 E-value=36 Score=27.75 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=35.3
Q ss_pred CCCCCCcceeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCc-cccCCCcchhHHHHH
Q 013534 347 PLPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQ-PVIPTLQLYNLVDLW 406 (441)
Q Consensus 347 ~lpqi~~~y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~-~~~~~~~l~~~~~~w 406 (441)
.+|+|-..=.-| .+.++|+.+.++|-++|+| .-+-+.+.+. ...|..++.+|.+..
T Consensus 18 ~~P~l~k~KflV-~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~f 74 (91)
T 3w1s_C 18 SIGQLKPSVCKI-SMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQF 74 (91)
T ss_dssp C-------EEEE-ETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHH
T ss_pred CCCcccccEEEc-CCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHh
Confidence 478887765555 4688999999999999999 3477777553 334456777777654
No 112
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.79 E-value=43 Score=26.07 Aligned_cols=33 Identities=15% Similarity=0.348 Sum_probs=16.1
Q ss_pred cccccccccccccceecCCCCCcchHHHHHHhh
Q 013534 24 CMTCPICNTLLRDATTISECLHTFCRKCIYDKI 56 (441)
Q Consensus 24 ~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l 56 (441)
+|.|..|...|..-.....=+..||..|....+
T Consensus 51 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 51 EFNCAHCKNTMAYIGFVEEKGALYCELCYEKFF 83 (90)
T ss_dssp TCBCSSSCCBCSSSCBEESSSCEECHHHHHHHT
T ss_pred CCccCCCCCCCCCCEeEeECCEEECHHHHHHHc
Confidence 456666655554321111345556666655444
No 113
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=23.61 E-value=46 Score=27.90 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=19.5
Q ss_pred ccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 25 MTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 25 LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
-.|.-|...+.....+..-+..|-..| |.|-.|+..|
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~C----------F~C~~C~~~L 98 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSRC----------LKCSSCQAQL 98 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETTT----------SBCTTTCCBG
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEcccc----------cCcCcCCCcc
Confidence 467777776655432213454554444 3455565554
No 114
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=23.35 E-value=33 Score=25.74 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=34.6
Q ss_pred eeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchh
Q 013534 356 LRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 356 ~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~ 401 (441)
+.| +.+.+|.-||..|..+.|+..+.+ -+.+.|+.+....+|.+
T Consensus 19 ~~v-~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~ 62 (79)
T 3phx_B 19 YEV-RLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGE 62 (79)
T ss_dssp EEE-CTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGG
T ss_pred EEE-CCcChHHHHHHHHHhhcCCCHHHE-EEEECCEECCCCCcHHH
Confidence 444 356799999999999999987654 67889998877666654
No 115
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=23.29 E-value=44 Score=29.54 Aligned_cols=44 Identities=16% Similarity=0.630 Sum_probs=32.2
Q ss_pred ccccccccccccccceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 23 ACMTCPICNTLLRDATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 23 e~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
++|.|..|...|..-... .=|..||..|....+. ..|..|...+
T Consensus 86 ~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f~----~kC~~C~~~I 129 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFG----TKCAACQLGI 129 (182)
T ss_dssp STTSCTTTCCCCSSCCEE-ETTEEECHHHHHHTTS----CCCTTTCCCC
T ss_pred ccCccCCCCCccCCCcee-ECCEeeecCccccccc----cccccCCCcc
Confidence 578999998877654333 3577899999877654 4699998765
No 116
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=23.28 E-value=33 Score=27.29 Aligned_cols=45 Identities=11% Similarity=0.224 Sum_probs=35.3
Q ss_pred eeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchh
Q 013534 355 YLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 355 y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~ 401 (441)
.|+| +.+.+|.-||+.|..+.|+..+.+ -|.+.|+.+....+|.+
T Consensus 36 ~l~v-~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~ 80 (98)
T 4hcn_B 36 TLEV-ESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSD 80 (98)
T ss_dssp EEEC-CTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBSGG
T ss_pred EEEE-CCCCcHHHHHHHHHHHhCCChhHE-EEEECCEECCCCCcHHH
Confidence 3555 457899999999999999887665 67789998877666654
No 117
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=23.27 E-value=33 Score=29.26 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=44.3
Q ss_pred CCCCCCcc-eeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhHHHHH
Q 013534 347 PLPQISSS-YLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNLVDLW 406 (441)
Q Consensus 347 ~lpqi~~~-y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~~~~w 406 (441)
.+|.|-+. || -...++|.-+..+|-++|.|..+.-+-+.+.+....++.++.+|.+..
T Consensus 42 ~~P~ldk~Kfl--Vp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~ 100 (118)
T 3rui_B 42 DIPEIDKRKYL--VPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEH 100 (118)
T ss_dssp CSCCCSCCEEE--EETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHH
T ss_pred CCCccccceEE--cCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHc
Confidence 47777654 55 467899999999999999999998888988775444556666666644
No 118
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=23.12 E-value=32 Score=30.71 Aligned_cols=47 Identities=19% Similarity=0.566 Sum_probs=35.3
Q ss_pred ccccccccccccccc---ceecCCCCCcchHHHHHHhhccCCCCCCCCCCccC
Q 013534 22 AACMTCPICNTLLRD---ATTISECLHTFCRKCIYDKISDEEIECCPVCNIDL 71 (441)
Q Consensus 22 ee~LtCpIClelf~d---PvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~l 71 (441)
.++|.|..|...|.. .... .=+..||..|....+... ..|..|...+
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~cy~~~~~~~--~~C~~C~~~I 79 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNS--GACSACGQSI 79 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEE-ETTEEECHHHHHHHHSCC--EECTTTCCEE
T ss_pred ccCcccCCCCcccccCCceEEE-eCCccccccccccccccC--CccccCCCcc
Confidence 358999999998875 4444 467889999998776421 2599999875
No 119
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.92 E-value=32 Score=25.27 Aligned_cols=35 Identities=23% Similarity=0.670 Sum_probs=23.0
Q ss_pred ccccccccccccccceecCCCCCcchHHHHHHhhc
Q 013534 23 ACMTCPICNTLLRDATTISECLHTFCRKCIYDKIS 57 (441)
Q Consensus 23 e~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~ 57 (441)
++|.|..|...|..-.....=+..||..|....+.
T Consensus 30 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred cCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 46888888877765322213566788888776654
No 120
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=22.54 E-value=31 Score=26.67 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=36.0
Q ss_pred eeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhH
Q 013534 356 LRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNL 402 (441)
Q Consensus 356 ~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~ 402 (441)
|.| +.+.+|.-||+.|..+.|+..+.+ -|.+.|+.+....+|.+.
T Consensus 20 ~~v-~~~~tV~~lK~~i~~~~gip~~~q-rLi~~Gk~L~d~~tL~~~ 64 (90)
T 4dwf_A 20 FIV-GAQMNVKEFKEHIAASVSIPSEKQ-RLIYQGRVLQDDKKLQEY 64 (90)
T ss_dssp EEE-ETTCBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGG
T ss_pred EEE-CCCCCHHHHHHHHHHHhCCCHHHE-EEEECCeECCCCCCHHHc
Confidence 455 357899999999999999987665 677899998877777653
No 121
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=21.97 E-value=35 Score=27.19 Aligned_cols=62 Identities=10% Similarity=0.166 Sum_probs=45.3
Q ss_pred CCCeeEEEeccccccCCCCCCCCCcceeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchhH
Q 013534 329 NGPIWFSLVASEDQRGSLPLPQISSSYLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYNL 402 (441)
Q Consensus 329 ~~~~wf~l~~~~~q~~~~~lpqi~~~y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~~ 402 (441)
...+.+.+.....+. -.|.|. .+.+|.-|++.+..+.|+..+ +.-+.+.|+.|....+|.++
T Consensus 19 ~~~m~I~Vk~~~g~~----------~~l~v~-~~~tv~~lK~~i~~~~gip~~-~qrLif~Gk~L~d~~tl~dy 80 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSE----------IHFKVK-MTTHLKKLKESYCQRQGVPMN-SLRFLFEGQRIADNHTPKEL 80 (97)
T ss_dssp CCEEEEEEECTTCCE----------EEEEEE-TTSCTHHHHHHHHHHHTCCGG-GEEEEETTEECCTTCCHHHH
T ss_pred CCcEEEEEEeCCCCE----------EEEEEC-CCCcHHHHHHHHHHHHCCChh-hEEEEECCeEcCCCCCHHHC
Confidence 345666666533221 247775 578999999999999999876 56688899999888776654
No 122
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.69 E-value=11 Score=33.65 Aligned_cols=47 Identities=21% Similarity=0.449 Sum_probs=32.6
Q ss_pred ccccccccccccc----cceecCCCCCcchHHHHHHhhccCCCCCCCCCCcc
Q 013534 23 ACMTCPICNTLLR----DATTISECLHTFCRKCIYDKISDEEIECCPVCNID 70 (441)
Q Consensus 23 e~LtCpIClelf~----dPvtLs~CgHtFC~~CI~~~l~~~~~~~CP~CR~~ 70 (441)
..-.|.+|..-|. ....-..|.|.+|..|-. +........|-+|...
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 4689999988652 333334699999999962 3344456888888753
No 123
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=21.61 E-value=38 Score=26.40 Aligned_cols=45 Identities=11% Similarity=0.213 Sum_probs=35.3
Q ss_pred eeeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchh
Q 013534 355 YLRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 355 y~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~ 401 (441)
.|+| +.+.+|.-||..|..+.|+..+.+ -|.+.|+.+....+|.+
T Consensus 31 ~l~v-~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~ 75 (91)
T 3v6c_B 31 TLEV-EPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSD 75 (91)
T ss_dssp EEEE-CTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBTGG
T ss_pred EEEE-CCCCCHHHHHHHHHhhhCCChhhE-EEEECCeECCCcCcHHH
Confidence 3565 468899999999999999987654 67788988776666554
No 124
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=21.31 E-value=39 Score=24.94 Aligned_cols=44 Identities=7% Similarity=0.080 Sum_probs=33.8
Q ss_pred eeeeCCCchHHHHHHHHHhhcCCCChhhHHHHhcCccccCCCcchh
Q 013534 356 LRIKDRNIPVSFIQKYLMMKLDLPSESEVEIKCMGQPVIPTLQLYN 401 (441)
Q Consensus 356 ~rikd~~~~~~~~~kyl~~kl~l~~e~eve~~c~g~~~~~~~~l~~ 401 (441)
+.| +.+.+|.-||..|..+.|+..+ +.-|.+.|+.+....+|.+
T Consensus 18 ~~v-~~~~tV~~LK~~i~~~~~i~~~-~qrL~~~gk~L~d~~tL~~ 61 (77)
T 2bwf_A 18 VNV-APESTVLQFKEAINKANGIPVA-NQRLIYSGKILKDDQTVES 61 (77)
T ss_dssp EEE-CTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTSBTGG
T ss_pred EEE-CCCCcHHHHHHHHHHHhCCCHH-HEEEEECCeEcCCCCCHHH
Confidence 444 4578999999999999999865 4567788988776666554
No 125
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.48 E-value=60 Score=23.65 Aligned_cols=35 Identities=20% Similarity=0.497 Sum_probs=24.3
Q ss_pred ccccccccccccccceecCCCCCcchHHHHHHhhc
Q 013534 23 ACMTCPICNTLLRDATTISECLHTFCRKCIYDKIS 57 (441)
Q Consensus 23 e~LtCpIClelf~dPvtLs~CgHtFC~~CI~~~l~ 57 (441)
+.|.|..|...|........=+..||..|....+.
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 46889999887754322224577899999877664
Done!