BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013535
(441 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 31/236 (13%)
Query: 103 SLRSSVGVMPTEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVV 160
L +V V+P E + + D PGLFS++ +A N+++A+I T +D A +
Sbjct: 711 GLTVAVEVLPDPERAVSEVLVATDDHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDI 770
Query: 161 HVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDD 220
G+AI+ +R++ + + + +VL G KA PP + R R L
Sbjct: 771 FTVQTLEGHAIEKEERIARLAKTVRDVLTGDLPLEKALRR-QPPRLPERTRHL------- 822
Query: 221 RDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVV 279
+ P+V V N K +TVI + +DRP L+ + LTD+ +
Sbjct: 823 ----------------TVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQI 866
Query: 280 FHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI----ERRASEGLE 331
V+T FY++ V G+ I A+ ++ + LEAAI R+ EG E
Sbjct: 867 SSARVSTYGERVVDSFYVKDVFGMKIVHRAKLAQIREALEAAITQTVPRKVEEGAE 922
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PPRV++DN TVI+++ ++ G L V + L DV + I A +S+ G +D F V
Sbjct: 825 PPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYV 884
Query: 74 IDCDGKKIRDKEVIDYIQQRLET 96
D G KI + + I++ LE
Sbjct: 885 KDVFGMKIVHRAKLAQIREALEA 907
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTG 380
+E+ DR G L +TR + ++ I A +ST G +V D+FYV DV G
Sbjct: 841 IEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVKDVFG 889
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 87/219 (39%), Gaps = 26/219 (11%)
Query: 107 SVGVMPTEEHTSIEFT--GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
+V P E E T D PGLFS++ LA ++V+A I T +D A
Sbjct: 744 TVEAYPIPERGVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQ 803
Query: 165 HSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYE 224
G + ++P +L + L+ L G D RK S R R +H
Sbjct: 804 DGEGCSFEEPHQLGRLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIH---------- 853
Query: 225 RVEKAVGRVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGM 283
P+V + N D +TVI + +DRP LL D+ L+ +
Sbjct: 854 -------------VPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAH 900
Query: 284 VNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322
+ T A FY+R + G+ I+ R+ + L A++
Sbjct: 901 ITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETLLASL 939
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 2 DDEYAKLIRRMN----PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKK 57
D + RRM PPRVVIDN TVI+V+ ++ G+L V L+ +L I
Sbjct: 839 DASHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISS 898
Query: 58 AYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102
A+I++ G +DVF V D G KI D + +++ L + AP
Sbjct: 899 AHITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETLLASLTSAP 943
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSI 391
+E+ DR GLL D+T SL I A I+T G + D FYV D+ G KI D +
Sbjct: 871 IEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFYVRDLLGM----KITDPV 926
Query: 392 RRQIGHTKLQVKRSTILAPKPPKETTT 418
R L R T+LA TT
Sbjct: 927 R-------LARLRETLLASLTSAPVTT 946
>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain
ymp) GN=glnD PE=3 SV=1
Length = 899
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
LEL DR GLL+ I RIF E LS++ A+I+T+G +V+D F+VTD P+ DP++
Sbjct: 817 LELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANNQPLSDPELCAR 876
Query: 391 IRRQI 395
++ I
Sbjct: 877 LQETI 881
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 29/194 (14%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + T I + + ++H + ++ +NL I A I+S + +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFTLDT 748
Query: 71 FNVIDCDGKKIRDK-------------------EVIDYIQQRLETDA---SFAPSLRSSV 108
+ V+D DG I D E IQ+R+ +FAP + ++
Sbjct: 749 YVVLDADGGSIGDNPARIKQIREGLIEALKNPDEYPTIIQRRVPRQLKHFAFAPQV--TI 806
Query: 109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
T +E T DRPGL + + + + ++ NA+I T +R V VTD +
Sbjct: 807 HNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTD-ANN 865
Query: 169 YAIKDPKRLSTIKE 182
+ DP+ + ++E
Sbjct: 866 QPLSDPELCARLQE 879
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
DEY +I+R P P+V I N+ T++++ + ++ G+L ++ ++ + +L
Sbjct: 781 DEYPTIIQRRVPRQLKHFAFAPQVTIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDL 840
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92
++ A I++ G DVF V D + + + D E+ +Q+
Sbjct: 841 SLQNAKIATLGERVEDVFFVTDANNQPLSDPELCARLQE 879
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 37/219 (16%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A ++ L+ N+ +A I T + +V + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFTLDTYVVLDADGGSIGD 761
Query: 174 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
P R+ I+E L L+ D++ P I+ R R+L F
Sbjct: 762 NPARIKQIREGLIEALKNPDEY---------PTIIQRRVPRQLKHFAF------------ 800
Query: 231 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
PQVT+ N ++ T++ + + DRP LL I + + + + T
Sbjct: 801 --------APQVTIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGE 852
Query: 290 EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASE 328
F++ + P+S + L+ I RR SE
Sbjct: 853 RVEDVFFVTDANNQPLSD----PELCARLQETIVRRLSE 887
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
LE+ DR GLL+ I RIF E LS++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 817 LEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 391 IRRQIGHTKLQVKRSTILAP 410
++ I +LQ +++ +P
Sbjct: 877 LQEAIVQ-QLQAGQASDASP 895
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF-MDV 70
P V+I T + T I + + ++H + ++ +NL I A I + F +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDT 748
Query: 71 FNVIDCDGKKIRD-----KEVIDYIQQRLETDASFAPSLR-------------SSVGVMP 112
+ V+D DG I D K++ D + + L + ++ V ++
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFNFPPQVTILN 808
Query: 113 TEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYA 170
+ T +E T DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 809 DAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQP 867
Query: 171 IKDPKRLSTIKELLFNVLRG 190
+ DP+ S ++E + L+
Sbjct: 868 LSDPQLCSRLQEAIVQQLQA 887
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 37/222 (16%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A ++ L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 174 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
P+R+ I++ L LR +D+ P I+ R R+L F
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDY---------PTIIQRRVPRQLKHFNFP----------- 801
Query: 231 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
PQVT+LN ++ T++ + + DRP LL I + + + + T
Sbjct: 802 ---------PQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGE 852
Query: 290 EAYQEFYIRHVDGLPISSEA----ERERVIQCLEAAIERRAS 327
F+I D P+S +E ++Q L+A AS
Sbjct: 853 RVEDVFFITDADNQPLSDPQLCSRLQEAIVQQLQAGQASDAS 894
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 46/79 (58%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP+V I N+ T++++ + ++ G+L ++ ++ + +L ++ A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 74 IDCDGKKIRDKEVIDYIQQ 92
D D + + D ++ +Q+
Sbjct: 861 TDADNQPLSDPQLCSRLQE 879
>sp|Q886P5|GLND_PSESM [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=glnD PE=3 SV=1
Length = 898
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
LEL DR GLL+ I +IF E LS++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNQPLSDPQLCSQ 875
Query: 391 IRRQI 395
++ I
Sbjct: 876 LQEAI 880
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 29/200 (14%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF-MDV 70
P V+I T + T I + + ++H + ++ +NL I A I + F +D
Sbjct: 688 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSQFTLDT 747
Query: 71 FNVIDCDGKKI-----RDKEVIDYIQQRLET-----------------DASFAPSLRSSV 108
+ V+D +G I R +++ D + + L +FAP + ++
Sbjct: 748 YIVLDHEGGSIGNNPERIQDIRDGLTEALRNPDDYPTIIKRRVPRQLKHFAFAPQV--TI 805
Query: 109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
T +E DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 806 HNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITD-ANN 864
Query: 169 YAIKDPKRLSTIKELLFNVL 188
+ DP+ S ++E + L
Sbjct: 865 QPLSDPQLCSQLQEAIVKQL 884
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVH-VTDHSTGYAIK 172
E T I D+ F+ A + L+ N+ +A I T + + + V DH G
Sbjct: 701 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDHEGGSIGN 760
Query: 173 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
+P+R+ I++ L LR DD+ P I+ R R+L F
Sbjct: 761 NPERIQDIRDGLTEALRNPDDY---------PTIIKRRVPRQLKHFAF------------ 799
Query: 231 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
PQVT+ N ++ TV+ + + DRP LL I + + + + T
Sbjct: 800 --------APQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGE 851
Query: 290 EAYQEFYIRHVDGLPIS 306
F+I + P+S
Sbjct: 852 RVEDVFFITDANNQPLS 868
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
D+Y +I+R P P+V I N+ TV+++ + ++ G+L ++ ++ + +L
Sbjct: 780 DDYPTIIKRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDL 839
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92
++ A I++ G DVF + D + + + D ++ +Q+
Sbjct: 840 SLQNAKIATLGERVEDVFFITDANNQPLSDPQLCSQLQE 878
>sp|Q48F57|GLND_PSE14 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=glnD PE=3 SV=1
Length = 898
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
LEL DR GLL+ I +IF E LS++ A+I+T+G +V+D F++TD +P+ DP++
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCSQ 875
Query: 391 IRRQI 395
++ I
Sbjct: 876 LQDAI 880
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 36/210 (17%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + T I + + ++H + ++ +NL I A I+S + +D
Sbjct: 688 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSKFTLDT 747
Query: 71 FNVIDCDGKKIRDK-EVIDYIQQRLETDA----------------------SFAPSLRSS 107
+ V+D +G I D E + I+ L T+A +FAP + +
Sbjct: 748 YIVLDNEGGSIGDNPERVQEIRNGL-TEALRNPDDYPTIIKRRVPRQLKHFAFAPQV--T 804
Query: 108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST 167
+ T +E DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 805 IHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITD-AN 863
Query: 168 GYAIKDPKRLST-----IKELLFNVLRGYD 192
+ + DP+ S +K+L N G+D
Sbjct: 864 NHPLSDPQLCSQLQDAIVKQLSVNSEPGHD 893
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
D+Y +I+R P P+V I N+ TV+++ + ++ G+L ++ ++ + +L
Sbjct: 780 DDYPTIIKRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDL 839
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQ----QRLETDASFAPSLRSSV 108
++ A I++ G DVF + D + + D ++ +Q ++L ++ LR S+
Sbjct: 840 SLQNAKIATLGERVEDVFFITDANNHPLSDPQLCSQLQDAIVKQLSVNSEPGHDLRISI 898
Score = 38.9 bits (89), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A + L+ N+ +A I T + + ++ + G +I D
Sbjct: 701 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSKFTLDTYIVLDNEGGSIGD 760
Query: 174 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
P+R+ I+ L LR DD+ P I+ R R+L F
Sbjct: 761 NPERVQEIRNGLTEALRNPDDY---------PTIIKRRVPRQLKHFAF------------ 799
Query: 231 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
PQVT+ N ++ TV+ + + DRP LL I + + + + T
Sbjct: 800 --------APQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGE 851
Query: 290 EAYQEFYIRHVDGLPIS 306
F+I + P+S
Sbjct: 852 RVEDVFFITDANNHPLS 868
>sp|Q4ZWT0|GLND_PSEU2 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=glnD PE=3 SV=1
Length = 898
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKII-- 388
LEL DR GLL+ I +IF E LS++ A+I+T+G +V+D F++TD +P+ DP++
Sbjct: 816 LELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCRQ 875
Query: 389 --DSIRRQI 395
D+I +Q+
Sbjct: 876 LQDAIVKQL 884
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVH-VTDHSTGYAIK 172
E T I D+ F+ A + L+ N+ +A I T + + + V DH G
Sbjct: 701 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSKFTLDTYIVLDHEGGSIGN 760
Query: 173 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
+P+R+ I+E L LR DD+ P I+ R R+L F
Sbjct: 761 NPERIQDIREGLTEALRNPDDY---------PTIIKRRVPRQLKHFAF------------ 799
Query: 231 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
PQVT+ N ++ TV+ + + DRP LL I + + + + T
Sbjct: 800 --------APQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGE 851
Query: 290 EAYQEFYIRHVDGLPIS 306
F+I + P+S
Sbjct: 852 RVEDVFFITDANNHPLS 868
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 31/188 (16%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + T I + + ++H + ++ +NL I A I+S + +D
Sbjct: 688 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSKFTLDT 747
Query: 71 FNVIDCDGKKI-RDKEVIDYIQQRLETDA----------------------SFAPSLRSS 107
+ V+D +G I + E I I++ L T+A +FAP + +
Sbjct: 748 YIVLDHEGGSIGNNPERIQDIREGL-TEALRNPDDYPTIIKRRVPRQLKHFAFAPQV--T 804
Query: 108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST 167
+ T +E DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 805 IHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITD-AN 863
Query: 168 GYAIKDPK 175
+ + DP+
Sbjct: 864 NHPLSDPQ 871
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 13/119 (10%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
D+Y +I+R P P+V I N+ TV+++ + ++ G+L ++ ++ + +L
Sbjct: 780 DDYPTIIKRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDL 839
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRD----KEVIDYIQQRLETDASFAPSLRSSV 108
++ A I++ G DVF + D + + D +++ D I ++L ++ LR S+
Sbjct: 840 SLQNAKIATLGERVEDVFFITDANNHPLSDPQLCRQLQDAIVKQLSVNSEPGNDLRISI 898
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
LE+ DR GLL+ I RIF E +S++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 817 LEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 391 IRRQIGHTKLQVKRSTILAP 410
++ I +LQ +++ +P
Sbjct: 877 LQEAIIQ-QLQAGQASEASP 895
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF-MDV 70
P V+I T + T I + + ++H + + +NL I A I + F +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFTLDT 748
Query: 71 FNVIDCDGKKIRD-----KEVIDYIQQRLETDASFAPSLR-------------SSVGVMP 112
+ V+D DG I D K++ D + + L T + ++ V ++
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRTPEDYPAIIQRRVPRQLKHFDFPPQVTILN 808
Query: 113 TEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYA 170
+ T +E T DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 809 DAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITD-ADNQP 867
Query: 171 IKDPKRLSTIKELLFNVLRG 190
+ DP+ S ++E + L+
Sbjct: 868 LSDPQLCSRLQEAIIQQLQA 887
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 37/222 (16%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A +A L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 174 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
P+R+ I++ L LR +D+ P I+ R R+L F
Sbjct: 762 NPQRVKQIRDGLTEALRTPEDY---------PAIIQRRVPRQLKHFDFP----------- 801
Query: 231 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
PQVT+LN ++ T++ + + DRP LL I + + + + T
Sbjct: 802 ---------PQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGE 852
Query: 290 EAYQEFYIRHVDGLPISSEA----ERERVIQCLEAAIERRAS 327
F+I D P+S +E +IQ L+A AS
Sbjct: 853 RVEDVFFITDADNQPLSDPQLCSRLQEAIIQQLQAGQASEAS 894
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 46/79 (58%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP+V I N+ T++++ + ++ G+L ++ ++ + ++ ++ A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFI 860
Query: 74 IDCDGKKIRDKEVIDYIQQ 92
D D + + D ++ +Q+
Sbjct: 861 TDADNQPLSDPQLCSRLQE 879
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PPRV+IDNN TVI+V+ ++ G+L + + L ++ L I A IS+ G +DVF V
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903
Query: 74 IDCDGKKIRDKEVIDYIQQRL 94
D G K+ + + I++RL
Sbjct: 904 KDVFGLKVTHENKLAQIRERL 924
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 30/208 (14%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPK 175
T + TD GLFS + LA ++V+A I+T N A V V D + G A +
Sbjct: 745 TEVTIFATDHHGLFSRLAGALAAAGADIVDARIFTMTNGMALDVFTVQDAAGGGAFESGD 804
Query: 176 RLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVED 235
+L+ + ++ VL G L P LH + +R R
Sbjct: 805 KLAKLSVMIEKVLSG---------QLKP---------LHDLT------KRKAPHASRTRV 840
Query: 236 KSSRPQVTV-LNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQE 294
P+V + N +TVI + +DRP LL+D+ LT++ + ++T +A
Sbjct: 841 FHVPPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDV 900
Query: 295 FYIRHVDGLPISSEAE----RERVIQCL 318
FY++ V GL ++ E + RER++ L
Sbjct: 901 FYVKDVFGLKVTHENKLAQIRERLLHAL 928
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPK 175
HT IE G DRPGL ++ L +L + +A+I T+ ++A V +V D G +
Sbjct: 857 HTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKD-VFGLKVTHEN 915
Query: 176 RLSTIKELLFNVL 188
+L+ I+E L + L
Sbjct: 916 KLAQIRERLLHAL 928
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTG 380
+E+ DR GLL D+TR +L I A+IST G K D FYV DV G
Sbjct: 860 IEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKDVFG 908
>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
GB-1) GN=glnD PE=3 SV=1
Length = 900
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
LE+ DR GLL+ + RIF E LS++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 391 IRRQIGHTKLQVKRSTILAP 410
++ I +LQ + + +P
Sbjct: 877 LQEAIVQ-QLQAGQGSDTSP 895
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF-MDV 70
P V+I T + T I + + ++H + ++ +NL I A I + F +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDT 748
Query: 71 FNVIDCDGKKIRD-----KEVIDYIQQRLETDASFAPSLR-------------SSVGVMP 112
+ V+D DG I D K++ D + + L + ++ V ++
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILN 808
Query: 113 TEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYA 170
+ T +E T DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 809 DAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQP 867
Query: 171 IKDPKRLSTIKELLFNVLRG 190
+ DP+ S ++E + L+
Sbjct: 868 LSDPQLCSRLQEAIVQQLQA 887
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A ++ L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 174 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
P+R+ I++ L LR +D+ P I+ R R+L F
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDY---------PTIIQRRVPRQLKHFDFP----------- 801
Query: 231 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
PQVT+LN ++ T++ + + DRP LL + + + + + T
Sbjct: 802 ---------PQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGE 852
Query: 290 EAYQEFYIRHVDGLPISSEA----ERERVIQCLEAA 321
F+I D P+S +E ++Q L+A
Sbjct: 853 RVEDVFFITDADNQPLSDPQLCSRLQEAIVQQLQAG 888
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 46/79 (58%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP+V I N+ T++++ + ++ G+L ++ ++ + +L ++ A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 74 IDCDGKKIRDKEVIDYIQQ 92
D D + + D ++ +Q+
Sbjct: 861 TDADNQPLSDPQLCSRLQE 879
>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1
Length = 908
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 61/260 (23%)
Query: 94 LETDASFAPSLRS----------SVGVMPTEEH--TSIEFTGTDRPGLFSEVCAVLADLH 141
+ET +FA LR + + P E+ T F D PG+FS + LA +
Sbjct: 683 VETHVTFAEMLRQLEHSGDPGGIEIRLDPDEDRDATRACFAMADHPGIFSRMAGALALVG 742
Query: 142 CNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPK-------RLSTIKELLFNVLRGYDDF 194
NVV+A +T D +VTD + I+D + RL + +++ L+G
Sbjct: 743 ANVVDARSYTTKDG-----YVTD---AFWIQDAEGHPYEAARLPRLSQMILKTLKGEVVA 794
Query: 195 RKAKTSLSPPGIMNRERRLH---QIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDY 251
R A S I RE+ + I FD+ + Y
Sbjct: 795 RDALKSRDK--IKKREKAFNVPTHITFDNEGSD-------------------------IY 827
Query: 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAER 311
T+I + ++DRP LL+D+ L + + ++ T + FY++ + GL SEA++
Sbjct: 828 TIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYVKDMFGLKYHSEAKQ 887
Query: 312 ERVIQCLEAAIERRASEGLE 331
+ LE + + +EG E
Sbjct: 888 ----RTLETKLRKAITEGAE 903
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTG 380
+E+ T DR GLL D+ R ++ I A I+T G +V D+FYV D+ G
Sbjct: 830 IEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYVKDMFG 878
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
P + DN T+I+VD+ ++ G+L + + L N+ I A I++ G +D F V
Sbjct: 814 PTHITFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYV 873
Query: 74 IDCDGKK 80
D G K
Sbjct: 874 KDMFGLK 880
>sp|Q88MI2|GLND_PSEPK [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
KT2440) GN=glnD PE=3 SV=1
Length = 900
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
LE+ DR GLL+ + RIF E LS++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 391 IRRQI 395
++ I
Sbjct: 877 LQEAI 881
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF-MDV 70
P V+I T + T I + + ++H + ++ +NL I A I + F +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDT 748
Query: 71 FNVIDCDGKKIRD-----KEVIDYIQQRLETDASFAPSLR-------------SSVGVMP 112
+ V+D DG I D K++ D + + L + ++ V ++
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILN 808
Query: 113 TEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYA 170
+ T +E T DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 809 DAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQP 867
Query: 171 IKDPKRLSTIKELLFNVLRG 190
+ DP+ S ++E + L+
Sbjct: 868 LSDPQLCSRLQEAIVQQLQA 887
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A ++ L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 174 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
P+R+ I++ L LR +D+ P I+ R R+L F
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDY---------PTIIQRRVPRQLKHFDFP----------- 801
Query: 231 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
PQVT+LN ++ T++ + + DRP LL + + + + + T
Sbjct: 802 ---------PQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGE 852
Query: 290 EAYQEFYIRHVDGLPISSEA----ERERVIQCLEAA 321
F+I D P+S +E ++Q L+A
Sbjct: 853 RVEDVFFITDADNQPLSDPQLCSRLQEAIVQQLQAG 888
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 46/79 (58%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP+V I N+ T++++ + ++ G+L ++ ++ + +L ++ A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 74 IDCDGKKIRDKEVIDYIQQ 92
D D + + D ++ +Q+
Sbjct: 861 TDADNQPLSDPQLCSRLQE 879
>sp|A5W852|GLND_PSEP1 [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain F1
/ ATCC 700007) GN=glnD PE=3 SV=1
Length = 900
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
LE+ DR GLL+ + RIF E LS++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876
Query: 391 IRRQI 395
++ I
Sbjct: 877 LQEAI 881
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF-MDV 70
P V+I T + T I + + ++H + ++ +NL I A I + F +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDT 748
Query: 71 FNVIDCDGKKIRD-----KEVIDYIQQRLETDASFAPSLR-------------SSVGVMP 112
+ V+D DG I D K++ D + + L + ++ V ++
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILN 808
Query: 113 TEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYA 170
+ T +E T DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 809 DAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQP 867
Query: 171 IKDPKRLSTIKELLFNVLRG 190
+ DP+ S ++E + L+
Sbjct: 868 LSDPQLCSRLQEAIVQQLQA 887
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A ++ L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 174 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
P+R+ I++ L LR +D+ P I+ R R+L F
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDY---------PTIIQRRVPRQLKHFDFP----------- 801
Query: 231 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
PQVT+LN ++ T++ + + DRP LL + + + + + T
Sbjct: 802 ---------PQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGE 852
Query: 290 EAYQEFYIRHVDGLPISSEA----ERERVIQCLEAA 321
F+I D P+S +E ++Q L+A
Sbjct: 853 RVEDVFFITDADNQPLSDPQLCSRLQEAIVQQLQAG 888
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 46/79 (58%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP+V I N+ T++++ + ++ G+L ++ ++ + +L ++ A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 74 IDCDGKKIRDKEVIDYIQQ 92
D D + + D ++ +Q+
Sbjct: 861 TDADNQPLSDPQLCSRLQE 879
>sp|Q4KHH8|GLND_PSEF5 [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=glnD PE=3 SV=1
Length = 900
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
LEL DR GLL+ I +IF E LS++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 817 LELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDAHNQPLSDPQLCSR 876
Query: 391 IRRQI 395
++ I
Sbjct: 877 LQDAI 881
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 28/186 (15%)
Query: 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF-MDVFNVIDCDGKKI-RDK 84
T I + + ++H + ++ +NL I A I + F +D + V+D DG+ I +
Sbjct: 704 GTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDNDGESIGNNP 763
Query: 85 EVIDYIQQRLETDA----------------------SFAPSLRSSVGVMPTEEHTSIEFT 122
+ ++ I++ L TDA +FAP + ++ T +E +
Sbjct: 764 QRVEQIRKGL-TDALRNPDDYPTIIQRRVPRQLKHFAFAPEV--TIHNDAQRPVTVLELS 820
Query: 123 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKE 182
DRPGL + + + + ++ NA+I T +R V +TD + + DP+ S +++
Sbjct: 821 APDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITD-AHNQPLSDPQLCSRLQD 879
Query: 183 LLFNVL 188
+ L
Sbjct: 880 AIVEQL 885
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
D+Y +I+R P P V I N+ TV+++ + ++ G+L ++ ++ + +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFAPEVTIHNDAQRPVTVLELSAPDRPGLLARIGKIFLEFDL 840
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQ 91
++ A I++ G DVF + D + + D ++ +Q
Sbjct: 841 SLQNAKIATLGERVEDVFFITDAHNQPLSDPQLCSRLQ 878
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 33/197 (16%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAI-K 172
E T I D+ F+ A + L+ N+ +A I T + + ++ + G +I
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDNDGESIGN 761
Query: 173 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
+P+R+ I++ L + LR DD+ P I+ R R+L F
Sbjct: 762 NPQRVEQIRKGLTDALRNPDDY---------PTIIQRRVPRQLKHFAF------------ 800
Query: 231 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
P+VT+ N ++ TV+ + + DRP LL I + + + + T
Sbjct: 801 --------APEVTIHNDAQRPVTVLELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGE 852
Query: 290 EAYQEFYIRHVDGLPIS 306
F+I P+S
Sbjct: 853 RVEDVFFITDAHNQPLS 869
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 338 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDSIRRQI 395
DR GLLS+IT + SL I A I+T G KV DTFYVTD+TG +D P I +IR ++
Sbjct: 855 DRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKIDSPARIATIRNRL 913
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS 178
IE G DRPGL SE+ L+DL ++ +A I T ++ +VTD TG I P R++
Sbjct: 849 IEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTD-LTGQKIDSPARIA 907
Query: 179 TIKELLFNVLRGYDDFRKAKT 199
TI+ L L G R K
Sbjct: 908 TIRNRLMATLEGIAPERGGKA 928
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PPR I N +VI+V+ +++ G+L ++ L+D++L I A+I++ G +D F V
Sbjct: 833 PPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYV 892
Query: 74 IDCDGKKIRDKEVIDYIQQRL 94
D G+KI I I+ RL
Sbjct: 893 TDLTGQKIDSPARIATIRNRL 913
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 89/239 (37%), Gaps = 29/239 (12%)
Query: 95 ETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 154
E DA+ L + V E T I D P L S + N+V+A+I+T D
Sbjct: 715 EADAA-GKKLATMVKTHQFEAVTEITVLAQDHPRLLSVIAGACVGAGGNIVDAQIFTTAD 773
Query: 155 RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLH 214
A + + +R + L+ +VL G S P I R +
Sbjct: 774 GRALDTILISREFDRDEDERRRAERVGRLIEDVLSG--------KSWLPEMIEKRTK--- 822
Query: 215 QIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTD 274
+ +V K R E +++ + ++VI + DRP LL +I TL+D
Sbjct: 823 -----PKRGAKVFKIPPRAEIRNT--------LSNRFSVIEVEGLDRPGLLSEITGTLSD 869
Query: 275 MQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAE----RERVIQCLEAAIERRASEG 329
+ + + T + FY+ + G I S A R R++ LE R +
Sbjct: 870 LSLDIASAHITTFGEKVIDTFYVTDLTGQKIDSPARIATIRNRLMATLEGIAPERGGKA 928
>sp|Q87MD6|GLND_VIBPA [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=glnD PE=3 SV=1
Length = 874
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 6 AKLIRRMNP--PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SS 62
A L+R +P P V+I T + V + ++ + V+ L+ N + A I +S
Sbjct: 668 AHLLRMDDPNKPLVLISKKATRGGTEVFVYTKDQPALFATVVAELDRRNFNVHDAQIMTS 727
Query: 63 DGGWFMDVFNVIDCDGKKI---RDKEVIDYIQQRLET------DASFAPS------LRSS 107
G +D F V+D G+ I R VI ++ LE P+ +++
Sbjct: 728 KDGHVIDTFMVLDQHGEAIDESRHAAVIKHLTHVLEAGRPTKIKTRRTPNKLQHFNVKTK 787
Query: 108 VGVMPTE--EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDH 165
V +PT+ +HT +EF D PGL ++V ADL+ N+ A+I T +RA + +T
Sbjct: 788 VDFLPTKGKKHTLMEFVALDTPGLLAKVGRTFADLNINLHGAKITTIGERAEDLFILTSE 847
Query: 166 STG 168
+ G
Sbjct: 848 AGG 850
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSI 391
+E D GLL+ + R F + ++++ A+I+TIG + +D F +T G + + + +
Sbjct: 801 MEFVALDTPGLLAKVGRTFADLNINLHGAKITTIGERAEDLFILTSEAGGRLSEEQQNEL 860
Query: 392 RRQI 395
R ++
Sbjct: 861 RDKL 864
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP V+I N+ TVI+V+ +++ G+L ++ VL+D++L I+ A I++ G +D F V
Sbjct: 825 PPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 884
Query: 74 IDCDGKKIRDKEVIDYIQQRLET 96
D G+KI ++ YI RL+
Sbjct: 885 ADLVGQKISNENRRAYITARLKA 907
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 338 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 383
DR GLLS+IT + + SL I+ A I+T G KV DTFYV D+ G +
Sbjct: 847 DRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVADLVGQKI 892
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T IE DRPGL SE+ AVL+DL ++ +A I T ++ +V D G I + R
Sbjct: 839 TVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVAD-LVGQKISNENR 897
Query: 177 LSTIKELLFNVLRGYDDFRKAKTSLSPPGIM 207
+ I L V+ G +D + + P GI+
Sbjct: 898 RAYITARLKAVMAGEEDEMRERM---PSGII 925
Score = 38.5 bits (88), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 240 PQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR 298
P V + N + +TVI + DRP LL +I L+D+ + + T + FY+
Sbjct: 826 PSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVA 885
Query: 299 HVDGLPISSEAERERVIQCLEAAI 322
+ G IS+E R + L+A +
Sbjct: 886 DLVGQKISNENRRAYITARLKAVM 909
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 172
++ +T IE +G DRPGL E+ ++ L+ N+ +A + T +RA V +VTD G I
Sbjct: 845 SDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQIN 903
Query: 173 DPKRLSTIKELLFNVLRG 190
P R S IK L +V+ G
Sbjct: 904 APTRQSAIKSALTHVMAG 921
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDS 390
+E+ DR GLL ++T + +L+I A ++T G + +D FYVTD+ G ++ P +
Sbjct: 851 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQINAPTRQSA 910
Query: 391 IRRQIGH 397
I+ + H
Sbjct: 911 IKSALTH 917
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V I+N TVI+V +++ G+L ++ ++ +NL I A++++ G DVF V
Sbjct: 836 PEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 895
Query: 75 DCDGKKI 81
D G +I
Sbjct: 896 DLLGAQI 902
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 85/212 (40%), Gaps = 45/212 (21%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVT-----DHSTGYA 170
T + D P L S + A N+V+A+I+T D RA + ++ D G
Sbjct: 739 TELTIFAADHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTISISREYDRDEDEG-- 796
Query: 171 IKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAV 230
+R + I E++ +VL G L P ++ R R ++
Sbjct: 797 ----RRATRIGEMIEDVLEG---------KLRLPEVVAR---------------RTVRSK 828
Query: 231 GR---VEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT 286
R +E P+VT+ N D YTVI + DRP LL+++ ++ + + V T
Sbjct: 829 ARPFVIE-----PEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVAT 883
Query: 287 GRTEAYQEFYIRHVDGLPISSEAERERVIQCL 318
A FY+ + G I++ + + L
Sbjct: 884 FGERARDVFYVTDLLGAQINAPTRQSAIKSAL 915
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 33/215 (15%)
Query: 112 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG--Y 169
P + T F D PG+FS + LA + NVV+A +T D A V S G Y
Sbjct: 736 PDRDATRACFALADHPGIFSRLAGALALVGANVVDARTYTTKDGYATAVFWIQDSEGSPY 795
Query: 170 AIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA 229
I RL + ++ L+G R+A DRD + +A
Sbjct: 796 EI---SRLPRLTSMIDKTLKGEVVAREA--------------------LKDRDKLKKREA 832
Query: 230 VGRVEDKSSRPQVTVLNIEKD--YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG 287
R P + E YT+I + ++DRP LL+D+ TL + ++ T
Sbjct: 833 QFRF------PTHIAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATY 886
Query: 288 RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322
+ FY++ + GL + + +E + + L AI
Sbjct: 887 GAQVVDSFYVKDMFGLKLHQKNRQETLEKKLRQAI 921
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTG 380
+E+ T DR GLL D+TR N++ I A I+T G +V D+FYV D+ G
Sbjct: 853 IEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVKDMFG 901
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
P + DN T+I+VD+ ++ G+L + + L N+ I A I++ G +D F V
Sbjct: 837 PTHIAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYV 896
Query: 74 IDCDGKKIRDKEVIDYIQQRL 94
D G K+ K + ++++L
Sbjct: 897 KDMFGLKLHQKNRQETLEKKL 917
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 80 KIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLAD 139
K+R + + R + +F+ S+ +E +T IE +G DRPGL E+ ++
Sbjct: 813 KLRLPDAVARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISK 872
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 192
L+ N+ +A + T +RA V +VTD G I P R + IK L ++L D
Sbjct: 873 LNLNIASAHVATFGERARDVFYVTD-LLGAQINAPTRQAAIKSALLHLLASED 924
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 38/208 (18%)
Query: 107 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVT-- 163
+VG P T + D P L S + A N+V+A+I+T D RA + ++
Sbjct: 729 NVGFDPARGVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISRE 788
Query: 164 ---DHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDD 220
D G +R + I E + VL G K L P + R R Q
Sbjct: 789 YERDEDEG------RRATRIGETIEQVLEG-------KLRL-PDAVARRTTRGKQ----- 829
Query: 221 RDYERVEKAVGRVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVV 279
KA S P+V++ N + YTVI + DRP LL+++ ++ + +
Sbjct: 830 ------HKAF------SVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNI 877
Query: 280 FHGMVNTGRTEAYQEFYIRHVDGLPISS 307
V T A FY+ + G I++
Sbjct: 878 ASAHVATFGERARDVFYVTDLLGAQINA 905
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD 384
+E+ DR GLL ++T + +L+I A ++T G + +D FYVTD+ G ++
Sbjct: 852 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQIN 904
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V I+N TVI+V +++ G+L ++ ++ +NL I A++++ G DVF V
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 75 DCDGKKI 81
D G +I
Sbjct: 897 DLLGAQI 903
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 172
++ HT IE +G DRPGL ++ A ++ L+ N+ +A + T +RA V +VTD G I
Sbjct: 846 SDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTD-LLGARIT 904
Query: 173 DPKRLSTIKELLFNVL 188
P R + IK L ++L
Sbjct: 905 APTRQAAIKRALIHLL 920
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 11 RMNP----PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGW 66
R+ P P+V+++N TVI+V +++ G+L Q+ ++ +NL I A++++ G
Sbjct: 829 RLRPFVVEPKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGER 888
Query: 67 FMDVFNVIDCDGKKI 81
DVF V D G +I
Sbjct: 889 ARDVFYVTDLLGARI 903
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDS 390
+E+ DR GLL +T + +L+I A ++T G + +D FYVTD+ G + P +
Sbjct: 852 IEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTDLLGARITAPTRQAA 911
Query: 391 IRRQIGH 397
I+R + H
Sbjct: 912 IKRALIH 918
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 81/218 (37%), Gaps = 30/218 (13%)
Query: 104 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
L +VG T + D P L S + A N+V+A+I+T D A
Sbjct: 726 LNINVGFDEARGVTELTIFAADHPWLLSIIAGACASAGANIVDAQIYTTTDGQALDTIAI 785
Query: 164 DHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDY 223
+ +R + I E++ V+ G L P ++ R
Sbjct: 786 SREYDRDEDEGRRAARIGEIIEQVIDG---------RLRLPDVVAR-------------- 822
Query: 224 ERVEKAVG--RVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVVF 280
+A G R+ P+V V N D +TVI + DRP LLF + ++ + +
Sbjct: 823 ----RAAGKTRLRPFVVEPKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIA 878
Query: 281 HGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCL 318
V T A FY+ + G I++ + + + L
Sbjct: 879 SAHVATFGERARDVFYVTDLLGARITAPTRQAAIKRAL 916
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 80 KIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLAD 139
K+R + + R + +F+ S+ +E +T IE +G DRPGL E+ ++
Sbjct: 813 KLRLPDAVARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISK 872
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188
L+ N+ +A + T +RA V +VTD G I P R + IK L ++L
Sbjct: 873 LNLNIASAHVATFGERARDVFYVTD-LLGAQINAPTRQAAIKSALLHLL 920
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 38/208 (18%)
Query: 107 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVT-- 163
+VG P T + D P L S + A N+V+A+I+T D RA + ++
Sbjct: 729 NVGFDPARGVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISRE 788
Query: 164 ---DHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDD 220
D G +R + I E + VL G K L P + R R Q
Sbjct: 789 YERDEDEG------RRATRIGETIEQVLEG-------KLRL-PDAVARRTTRGKQ----- 829
Query: 221 RDYERVEKAVGRVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVV 279
KA S P+V++ N + YTVI + DRP LL+++ ++ + +
Sbjct: 830 ------HKAF------SVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNI 877
Query: 280 FHGMVNTGRTEAYQEFYIRHVDGLPISS 307
V T A FY+ + G I++
Sbjct: 878 ASAHVATFGERARDVFYVTDLLGAQINA 905
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD 384
+E+ DR GLL ++T + +L+I A ++T G + +D FYVTD+ G ++
Sbjct: 852 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQIN 904
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V I+N TVI+V +++ G+L ++ ++ +NL I A++++ G DVF V
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 75 DCDGKKI 81
D G +I
Sbjct: 897 DLLGAQI 903
>sp|C3K5E4|GLND_PSEFS [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain SBW25) GN=glnD PE=3 SV=1
Length = 900
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKII-- 388
LEL DR GLL+ I IF E LS++ A+I+T+G +V+D F++TD P+ DP++
Sbjct: 817 LELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPELCRR 876
Query: 389 --DSIRRQIGHTK---LQVKRSTI 407
D+I +Q+ T+ +++ R TI
Sbjct: 877 LQDAIVQQLSVTQEPGVELTRLTI 900
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 31/188 (16%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + T I + + ++H + ++ +NL I A I+S + +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDT 748
Query: 71 FNVIDCDGKKIRDKEVI----------------DY---IQQRLETDA---SFAPSLR-SS 107
+ V+D +G+ I D V DY IQ+R+ +FAP + S+
Sbjct: 749 YIVLDTEGESIGDNPVRVKKIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFAPQVTISN 808
Query: 108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST 167
P T +E + DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 809 DAQRPV---TVLELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVFFITD-AD 864
Query: 168 GYAIKDPK 175
+ DP+
Sbjct: 865 NQPLSDPE 872
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 33/227 (14%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A + L+ N+ +A + T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDTYIVLDTEGESIGD 761
Query: 174 -PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
P R+ I+E L LR DD+ P I+ R R+L F
Sbjct: 762 NPVRVKKIREGLTEALRNPDDY---------PTIIQRRVPRQLKHFAF------------ 800
Query: 231 GRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
PQVT+ N ++ TV+ + + DRP LL I + + + + T
Sbjct: 801 --------APQVTISNDAQRPVTVLELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGE 852
Query: 290 EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCT 336
F+I D P+S R+ + + G+EL T
Sbjct: 853 RVEDVFFITDADNQPLSDPELCRRLQDAIVQQLSVTQEPGVELTRLT 899
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
D+Y +I+R P P+V I N+ TV+++ + ++ G+L ++ + + +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFAPQVTISNDAQRPVTVLELSAPDRPGLLARIGGIFLEFDL 840
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQ 91
++ A I++ G DVF + D D + + D E+ +Q
Sbjct: 841 SLQNAKIATLGERVEDVFFITDADNQPLSDPELCRRLQ 878
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDS 390
E+EL T D+ GLL+D++ +F E +LSI+ A+I+TIG K +D F +T+ G + +
Sbjct: 806 EMELFTLDKAGLLADVSLVFSELNLSIQNAKITTIGEKAQDFFILTNAKGEALSER---- 861
Query: 391 IRRQIGHTKLQVK 403
RQ KLQ +
Sbjct: 862 -ERQSLSEKLQAR 873
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 90/184 (48%), Gaps = 18/184 (9%)
Query: 17 VVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVID 75
V I N A T + + ++ + L+V+ + + L I A I +S G+ D F V +
Sbjct: 688 VKISNRFSAGGTEVFIYCKDRPNLFLKVVAAIGNKKLSIHDAQIITSLDGYAFDSFIVTE 747
Query: 76 CDG-------KKIRDKEVIDYIQ-------QRLETDASFAPSLRSSVGVMPTEE--HTSI 119
DG +++ +K +I+ + Q E ++++ V + TE+ HT +
Sbjct: 748 LDGSLLKFDRRRVLEKAIINSLNSNELTKLQGSENHKLQHFNVKTEVRFLNTEKTTHTEM 807
Query: 120 EFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLST 179
E D+ GL ++V V ++L+ ++ NA+I T ++A +T+ + G A+ + +R S
Sbjct: 808 ELFTLDKAGLLADVSLVFSELNLSIQNAKITTIGEKAQDFFILTN-AKGEALSERERQSL 866
Query: 180 IKEL 183
++L
Sbjct: 867 SEKL 870
>sp|P36223|GLND_AZOVI [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii GN=glnD
PE=3 SV=1
Length = 899
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
LE+ DR GLL+ I +IF + LS++ A+I+T+G +V+D F+VTD P+ DP++
Sbjct: 817 LEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHNQPLSDPELCAR 876
Query: 391 IRRQI------GHTKLQVKRSTI 407
++ I G + +Q R +I
Sbjct: 877 LQLAIAEQLADGDSYIQPSRISI 899
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 31/188 (16%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + AT I + + ++H + ++ +NL I A I+S + +D
Sbjct: 689 PLVLIKETTQREFEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDT 748
Query: 71 FNVIDCDGKKI-----RDKEV-----------IDY---IQQRLETDA---SFAPSLR-SS 107
+ V+D DG I R +E+ DY IQ+R+ +FAP + +
Sbjct: 749 YIVLDADGGSIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQN 808
Query: 108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST 167
+ P T +E DRPGL + + + D ++ NA+I T +R V VTD +
Sbjct: 809 DALRPV---TILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTD-AH 864
Query: 168 GYAIKDPK 175
+ DP+
Sbjct: 865 NQPLSDPE 872
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 4 EYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLV 54
+Y +I+R P P+V I N+ T++++ + ++ G+L ++ ++ D +L
Sbjct: 782 DYPTIIQRRVPRQLKHFAFAPQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLS 841
Query: 55 IKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQ-----QRLETDASFAPS 103
++ A I++ G DVF V D + + D E+ +Q Q + D+ PS
Sbjct: 842 LQNAKIATLGERVEDVFFVTDAHNQPLSDPELCARLQLAIAEQLADGDSYIQPS 895
>sp|C1DSU8|GLND_AZOVD [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii (strain
DJ / ATCC BAA-1303) GN=glnD PE=3 SV=1
Length = 899
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
LE+ DR GLL+ I +IF + LS++ A+I+T+G +V+D F+VTD P+ DP++
Sbjct: 817 LEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHNQPLSDPELCAR 876
Query: 391 IRRQI------GHTKLQVKRSTI 407
++ I G + +Q R +I
Sbjct: 877 LQLAIAEQLADGDSYIQPSRISI 899
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 31/188 (16%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + AT I + + ++H + ++ +NL I A I+S + +D
Sbjct: 689 PLVLIKETTQREFEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDT 748
Query: 71 FNVIDCDGKKI-----RDKEV-----------IDY---IQQRLETDA---SFAPSLR-SS 107
+ V+D DG I R +E+ DY IQ+R+ +FAP + +
Sbjct: 749 YIVLDADGGSIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQN 808
Query: 108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST 167
+ P T +E DRPGL + + + D ++ NA+I T +R V VTD +
Sbjct: 809 DALRPV---TILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTD-AH 864
Query: 168 GYAIKDPK 175
+ DP+
Sbjct: 865 NQPLSDPE 872
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 4 EYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLV 54
+Y +I+R P P+V I N+ T++++ + ++ G+L ++ ++ D +L
Sbjct: 782 DYPTIIQRRVPRQLKHFAFAPQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLS 841
Query: 55 IKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQ-----QRLETDASFAPS 103
++ A I++ G DVF V D + + D E+ +Q Q + D+ PS
Sbjct: 842 LQNAKIATLGERVEDVFFVTDAHNQPLSDPELCARLQLAIAEQLADGDSYIQPS 895
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 172
++ HT IE +G DRPGL ++ ++ L+ N+ +A + T +RA V +VTD G I
Sbjct: 844 SDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGARIT 902
Query: 173 DPKRLSTIKELLFNVL 188
P R + IK L ++L
Sbjct: 903 APTRQAAIKRALVHLL 918
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 10 RRMNP----PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGG 65
+R+ P P+V I+N T+I+V +++ G+L Q+ ++ +NL I A++++ G
Sbjct: 826 KRLRPFVVEPKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGE 885
Query: 66 WFMDVFNVIDCDGKKI 81
DVF V D G +I
Sbjct: 886 RARDVFYVTDLLGARI 901
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 77/204 (37%), Gaps = 29/204 (14%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T + D P L S + A N+V+A+I+T D A + +R
Sbjct: 738 TELTILAADHPWLLSIIAGACASAGANIVDAQIYTTTDGQALDTIAISREYERDEDEGRR 797
Query: 177 LSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVG-RVED 235
+ I E++ VL G L P +M +A G R+
Sbjct: 798 AARIAEIIEQVLEG---------RLRLPDVMP------------------SRAAGKRLRP 830
Query: 236 KSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQE 294
P+VT+ N D +T+I + DRP LLF + ++ + + V T A
Sbjct: 831 FVVEPKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDV 890
Query: 295 FYIRHVDGLPISSEAERERVIQCL 318
FY+ + G I++ + + + L
Sbjct: 891 FYVTDLLGARITAPTRQAAIKRAL 914
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDS 390
+E+ DR GLL +T + +L+I A ++T G + +D FYVTD+ G + P +
Sbjct: 850 IEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGARITAPTRQAA 909
Query: 391 IRRQIGH 397
I+R + H
Sbjct: 910 IKRALVH 916
>sp|Q7MIF8|GLND_VIBVY [Protein-PII] uridylyltransferase OS=Vibrio vulnificus (strain
YJ016) GN=glnD PE=3 SV=1
Length = 873
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 27/203 (13%)
Query: 8 LIRRMNP--PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDG 64
++R NP P V++ T + V + ++H + V+ L+ N + A I SS
Sbjct: 670 ILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVHDAQIMSSKD 729
Query: 65 GWFMDVFNVIDCDGKKI---RDKEVIDYIQQRLETDASFAPS---------------LRS 106
G+ +D F V+D G+ I K VI ++ L TD P+ +++
Sbjct: 730 GYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVL-TDGR--PTKVKTRRTPYKLQHFKVKT 786
Query: 107 SVGVMPTE--EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
V +PT+ + T +E D PGL + A AD+ N+ A+I T +RA + +T
Sbjct: 787 KVDFLPTKSKKRTLMELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTS 846
Query: 165 HSTGYAIKDPKRLSTIKELLFNV 187
+ G + + + L ++L+ N+
Sbjct: 847 ENGG-RLSEEQELQLREKLIHNI 868
Score = 32.0 bits (71), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSI 391
+EL D GLL+ F + ++ A+I+TIG + +D F +T G + + +
Sbjct: 801 MELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTSENGGRLSEEQELQL 860
Query: 392 RRQIGH 397
R ++ H
Sbjct: 861 REKLIH 866
>sp|Q3KHB4|GLND_PSEPF [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf0-1) GN=glnD PE=3 SV=1
Length = 900
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DP----K 386
LEL DR GLL+ + IF E LS++ A+I+T+G +V+D F++TD P+ DP +
Sbjct: 817 LELTAPDRPGLLARVGGIFLEFDLSLQNAKIATLGERVEDVFFITDAHNQPLSDPLLCSR 876
Query: 387 IIDSIRRQI 395
+ D+I Q+
Sbjct: 877 LQDAIVEQL 885
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 29/200 (14%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + T I + + ++H + ++ +NL I A I+S + +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDT 748
Query: 71 FNVIDCDG----------KKIRD------KEVIDY---IQQRLETDA---SFAPSLRSSV 108
+ V+D DG K+IRD + DY IQ+R+ +FAP + ++
Sbjct: 749 YIVLDTDGDSIGDNPVRVKQIRDGLTEALRNPADYPTIIQRRVPRQLKHFAFAPQV--TI 806
Query: 109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
T +E T DRPGL + V + + ++ NA+I T +R V +TD +
Sbjct: 807 HNDAQRPVTVLELTAPDRPGLLARVGGIFLEFDLSLQNAKIATLGERVEDVFFITD-AHN 865
Query: 169 YAIKDPKRLSTIKELLFNVL 188
+ DP S +++ + L
Sbjct: 866 QPLSDPLLCSRLQDAIVEQL 885
>sp|Q8DBG3|GLND_VIBVU [Protein-PII] uridylyltransferase OS=Vibrio vulnificus (strain
CMCP6) GN=glnD PE=3 SV=1
Length = 873
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 27/203 (13%)
Query: 8 LIRRMNP--PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDG 64
++R NP P V++ T + V + ++H + V+ L+ N + A I SS
Sbjct: 670 ILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVHDAQIMSSKD 729
Query: 65 GWFMDVFNVIDCDGKKI---RDKEVIDYIQQRLETDASFAPS---------------LRS 106
G+ +D F V+D G+ I K VI ++ L A P+ +++
Sbjct: 730 GYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVL---ADGRPTKVKTRRTPYKLQHFKVKT 786
Query: 107 SVGVMPTE--EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
V +PT+ + T +E D PGL + A AD+ N+ A+I T +RA + +T
Sbjct: 787 KVDFLPTKSKKRTLMELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTS 846
Query: 165 HSTGYAIKDPKRLSTIKELLFNV 187
+ G + + + L ++L+ N+
Sbjct: 847 ENGG-RLSEEQELQLREKLIHNI 868
Score = 32.3 bits (72), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSI 391
+EL D GLL+ F + ++ A+I+TIG + +D F +T G + + +
Sbjct: 801 MELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTSENGGRLSEEQELQL 860
Query: 392 RRQIGH 397
R ++ H
Sbjct: 861 REKLIH 866
>sp|A7N1X9|GLND_VIBHB [Protein-PII] uridylyltransferase OS=Vibrio harveyi (strain ATCC
BAA-1116 / BB120) GN=glnD PE=3 SV=1
Length = 874
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 18/172 (10%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNV 73
P V+I T + V S ++ + V+ L+ N + A I +S G+ +D F V
Sbjct: 679 PLVLISKKATRGGTEVFVYSPDQPALFATVVAELDRRNFNVHDAQIMTSKDGYVLDTFMV 738
Query: 74 IDCDGKKI---RDKEVIDYIQQRLE------TDASFAPS------LRSSVGVMPTE--EH 116
+D GK I R V +I LE P+ +++ V +PT+ +
Sbjct: 739 LDQHGKAIEEGRHSAVTKHITHVLEDGRPTKIKTRRTPNKLQHFNVKTKVDFLPTKSKKR 798
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
T +EF D PGL ++V ADL N+ A+I T +RA + +T + G
Sbjct: 799 TLMEFVALDTPGLLAKVGRTFADLGINLHAAKITTIGERAEDLFILTSEAGG 850
Score = 35.4 bits (80), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSI 391
+E D GLL+ + R F + +++ A+I+TIG + +D F +T G + + +
Sbjct: 801 MEFVALDTPGLLAKVGRTFADLGINLHAAKITTIGERAEDLFILTSEAGGRLSEEQQTEL 860
Query: 392 RRQI 395
R ++
Sbjct: 861 REKL 864
>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain
A1501) GN=glnD PE=3 SV=1
Length = 900
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDS 390
LE+ DR GLL+ + ++F + LS++ A+I+T+G +V+D F+VTD P+ DP++
Sbjct: 817 LEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTDADNQPLSDPQLCLR 876
Query: 391 IRRQI 395
+++ I
Sbjct: 877 LQQAI 881
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP+V I N+T T++++ + ++ G+L +V Q+ D +L ++ A I++ G DVF V
Sbjct: 801 PPQVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFV 860
Query: 74 IDCDGKKIRDKEVIDYIQQ 92
D D + + D ++ +QQ
Sbjct: 861 TDADNQPLSDPQLCLRLQQ 879
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 25/211 (11%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF-MDV 70
P V+I T + T I + + ++H + ++ +NL I A I + F +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARILTSSSQFTLDT 748
Query: 71 FNVIDCDGKKI-----RDKEV--------------IDYIQQRLETD-ASFAPSLRSSVGV 110
+ V++ DG I R +E+ + IQ+R+ FA + ++
Sbjct: 749 YIVLEADGSPIGNNPERIEEIRSGLIAALRNPDDYLTIIQRRVPRQLKHFAFPPQVTIHN 808
Query: 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYA 170
T +E DRPGL + V + D +V NA+I T +R V VTD +
Sbjct: 809 DTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTD-ADNQP 867
Query: 171 IKDPKRLSTIKELLFNVLRGYDDFRKAKTSL 201
+ DP+ +++ + L+ ++ + + +S+
Sbjct: 868 LSDPQLCLRLQQAIIKELQQENEQQPSPSSI 898
>sp|Q5NPH0|GLND_ZYMMO [Protein-PII] uridylyltransferase OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=glnD PE=3
SV=1
Length = 926
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 38/236 (16%)
Query: 63 DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFT 122
D WF + +VI + +QQ ++TD S S+ MP + T I
Sbjct: 695 DDYWFSERTDVIAAN------------MQQIIDTD-SKGQSISVRGHEMPAYDATMISLY 741
Query: 123 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKE 182
D PG F + + N+++A I T D A + +S G IK + L+ + +
Sbjct: 742 AIDHPGFFYRISGAIHATGGNILDARIHTTRDGMAMDNLLVQNSQGGMIKSGEHLNRMMQ 801
Query: 183 LLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQV 242
+ + + +L PP + R + H VE P V
Sbjct: 802 AIEDAATSHIRSSNKLAALRPP-LFWRGKAFH------------------VE-----PLV 837
Query: 243 TVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYI 297
+ N D +TVI + ++DRP LL D+ C L + + + + T A FY+
Sbjct: 838 FIDNQASDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYV 893
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V IDN TVI+V++ ++ +L + L + L I A+I++ G +DVF V
Sbjct: 835 PLVFIDNQASDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVS 894
Query: 75 DCDGKKIRDKEVIDYIQQRL 94
D KI ++ + I++RL
Sbjct: 895 DLFSHKITNQNRLKAIEKRL 914
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 34/168 (20%)
Query: 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSE 308
D T+I++ + D P + I + + ++T R A +++ G I S
Sbjct: 734 DATMISLYAIDHPGFFYRISGAIHATGGNILDARIHTTRDGMAMDNLLVQNSQGGMIKSG 793
Query: 309 AERERVIQCLEAA--------------------------------IERRASEGLE-LELC 335
R++Q +E A I+ +AS+ +E+
Sbjct: 794 EHLNRMMQAIEDAATSHIRSSNKLAALRPPLFWRGKAFHVEPLVFIDNQASDRFTVIEVN 853
Query: 336 TEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 383
+DR LL D+ L+I A I+T G + D FYV+D+ + +
Sbjct: 854 AQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVSDLFSHKI 901
>sp|Q9Z9H0|GLND_PSEAE [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=glnD
PE=3 SV=2
Length = 900
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKI 387
LE+ DR GLL+ I IF + LS++ A+I+T+G +V+D FY+TD P+ DP +
Sbjct: 817 LEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARNQPLADPDL 873
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + + I + + ++H + ++ +NL I+ A I+S + +D
Sbjct: 689 PLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDT 748
Query: 71 FNVIDCDGKKIRD----------------KEVIDY---IQQRLETDA---SFAPSLRSSV 108
+ V+D DG I + K DY IQ+R+ +FAP + S
Sbjct: 749 YIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTIST 808
Query: 109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
+ + + +E DRPGL + + + D +V NA+I T +R V ++TD +
Sbjct: 809 DAL--RQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITD-ARN 865
Query: 169 YAIKDP---KRLST 179
+ DP KRL
Sbjct: 866 QPLADPDLCKRLQA 879
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
D+Y +I+R P P+V I + +V++V + ++ G+L ++ + D +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDL 840
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94
++ A I++ G DVF + D + + D ++ +Q L
Sbjct: 841 SVQNAKIATLGERVEDVFYITDARNQPLADPDLCKRLQAAL 881
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAI-K 172
E + I D+ F+ A + L+ ++ +A I T + ++ + G +I
Sbjct: 702 ESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIGN 761
Query: 173 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
+P+R++ I+E L + L+ DD+ P I+ R R+L F
Sbjct: 762 NPERIAEIREGLIDALKNPDDY---------PTIIQRRVPRQLKHFAF------------ 800
Query: 231 GRVEDKSSRPQVTV-LNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
PQVT+ + + +V+ + + DRP LL I D V + + T
Sbjct: 801 --------APQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGE 852
Query: 290 EAYQEFYIRHVDGLPIS 306
FYI P++
Sbjct: 853 RVEDVFYITDARNQPLA 869
>sp|Q02RD0|GLND_PSEAB [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=glnD PE=3 SV=1
Length = 900
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKI 387
LE+ DR GLL+ I IF + LS++ A+I+T+G +V+D FY+TD P+ DP +
Sbjct: 817 LEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARNQPLADPDL 873
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + + I + + ++H + ++ +NL I+ A I+S + +D
Sbjct: 689 PLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDT 748
Query: 71 FNVIDCDGKKIRD----------------KEVIDY---IQQRLETDA---SFAPSLRSSV 108
+ V+D DG I + K DY IQ+R+ +FAP + S
Sbjct: 749 YIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTIST 808
Query: 109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
+ + + +E DRPGL + + + D +V NA+I T +R V ++TD +
Sbjct: 809 DAL--RQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITD-ARN 865
Query: 169 YAIKDP---KRLST 179
+ DP KRL
Sbjct: 866 QPLADPDLCKRLQA 879
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
D+Y +I+R P P+V I + +V++V + ++ G+L ++ + D +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDL 840
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94
++ A I++ G DVF + D + + D ++ +Q L
Sbjct: 841 SVQNAKIATLGERVEDVFYITDARNQPLADPDLCKRLQAAL 881
Score = 35.8 bits (81), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAI-K 172
E + I D+ F+ A + L+ ++ +A I T + ++ + G +I
Sbjct: 702 ESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIGN 761
Query: 173 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
+P+R++ I+E L + L+ DD+ P I+ R R+L F
Sbjct: 762 NPERIAEIREGLIDALKNPDDY---------PTIIQRRVPRQLKHFAF------------ 800
Query: 231 GRVEDKSSRPQVTV-LNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
PQVT+ + + +V+ + + DRP LL I D V + + T
Sbjct: 801 --------APQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGE 852
Query: 290 EAYQEFYIRHVDGLPIS 306
FYI P++
Sbjct: 853 RVEDVFYITDARNQPLA 869
>sp|B7V7F5|GLND_PSEA8 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
LESB58) GN=glnD PE=3 SV=1
Length = 900
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKI 387
LE+ DR GLL+ I IF + LS++ A+I+T+G +V+D FY+TD P+ DP +
Sbjct: 817 LEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARNQPLADPDL 873
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + + I + + ++H + ++ +NL I+ A I+S + +D
Sbjct: 689 PLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDT 748
Query: 71 FNVIDCDGKKIRD----------------KEVIDY---IQQRLETDA---SFAPSLRSSV 108
+ V+D DG I + K DY IQ+R+ +FAP + S
Sbjct: 749 YIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTIST 808
Query: 109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
+ + + +E DRPGL + + + D +V NA+I T +R V ++TD +
Sbjct: 809 DAL--RQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITD-ARN 865
Query: 169 YAIKDP---KRLST 179
+ DP KRL
Sbjct: 866 QPLADPDLCKRLQA 879
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
D+Y +I+R P P+V I + +V++V + ++ G+L ++ + D +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDL 840
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94
++ A I++ G DVF + D + + D ++ +Q L
Sbjct: 841 SVQNAKIATLGERVEDVFYITDARNQPLADPDLCKRLQAAL 881
Score = 35.8 bits (81), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAI-K 172
E + I D+ F+ A + L+ ++ +A I T + ++ + G +I
Sbjct: 702 ESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIGN 761
Query: 173 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
+P+R++ I+E L + L+ DD+ P I+ R R+L F
Sbjct: 762 NPERIAEIREGLIDALKNPDDY---------PTIIQRRVPRQLKHFAF------------ 800
Query: 231 GRVEDKSSRPQVTV-LNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
PQVT+ + + +V+ + + DRP LL I D V + + T
Sbjct: 801 --------APQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGE 852
Query: 290 EAYQEFYIRHVDGLPIS 306
FYI P++
Sbjct: 853 RVEDVFYITDARNQPLA 869
>sp|A6V1D0|GLND_PSEA7 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
PA7) GN=glnD PE=3 SV=1
Length = 900
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKI 387
LE+ DR GLL+ I IF + LS++ A+I+T+G +V+D FY+TD P+ DP +
Sbjct: 817 LEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARNQPLADPDL 873
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + + I + + ++H + ++ +NL I+ A I+S + +D
Sbjct: 689 PLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDT 748
Query: 71 FNVIDCDGKKIRD----------------KEVIDY---IQQRLETDA---SFAPSLRSSV 108
+ V+D DG I + K DY IQ+R+ +FAP + S
Sbjct: 749 YIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTIST 808
Query: 109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
+ + + +E DRPGL + + + D +V NA+I T +R V ++TD +
Sbjct: 809 DAL--RQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITD-ARN 865
Query: 169 YAIKDP---KRLST 179
+ DP KRL
Sbjct: 866 QPLADPDLCKRLQA 879
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
D+Y +I+R P P+V I + +V++V + ++ G+L ++ + D +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDL 840
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94
++ A I++ G DVF + D + + D ++ +Q L
Sbjct: 841 SVQNAKIATLGERVEDVFYITDARNQPLADPDLCKRLQAAL 881
Score = 35.8 bits (81), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAI-K 172
E + I D+ F+ A + L+ ++ +A I T + ++ + G +I
Sbjct: 702 ESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIGN 761
Query: 173 DPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRE--RRLHQIMFDDRDYERVEKAV 230
+P+R++ I+E L + L+ DD+ P I+ R R+L F
Sbjct: 762 NPERIAEIREGLIDALKNPDDY---------PTIIQRRVPRQLKHFAF------------ 800
Query: 231 GRVEDKSSRPQVTV-LNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT 289
PQVT+ + + +V+ + + DRP LL I D V + + T
Sbjct: 801 --------APQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGE 852
Query: 290 EAYQEFYIRHVDGLPIS 306
FYI P++
Sbjct: 853 RVEDVFYITDARNQPLA 869
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 172
++ +T IE +G DRPGL ++ ++ L+ N+ +A + T +RA V +VTD G I
Sbjct: 844 SDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQIT 902
Query: 173 DPKRLSTIKELLFNVLRGYDDFRK 196
P R + IK L ++L D K
Sbjct: 903 APTRQAAIKRALVHLLANGDAAEK 926
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 6 AKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGG 65
AKL + P V I+NN TVI+V +++ G+L Q+ ++ +NL I A++++ G
Sbjct: 826 AKLRAFVVEPEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGE 885
Query: 66 WFMDVFNVIDCDGKKI 81
DVF V D G +I
Sbjct: 886 RARDVFYVTDLLGAQI 901
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDS 390
+E+ DR GLL +T + +L+I A ++T G + +D FYVTD+ G + P +
Sbjct: 850 IEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQITAPTRQAA 909
Query: 391 IRRQIGH 397
I+R + H
Sbjct: 910 IKRALVH 916
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 83/219 (37%), Gaps = 36/219 (16%)
Query: 107 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVT-- 163
+VG T + D P L S + A N+V+A+I+T D RA + ++
Sbjct: 725 NVGFDEARAVTELTILAVDHPWLLSVIAGACASAGANIVDAQIYTTTDGRALDTISISRE 784
Query: 164 ---DHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDD 220
D G +R + I E + VL G +A + G + +L + +
Sbjct: 785 YDRDEDEG------RRATRIGETIEEVLEGKLRLPEAVARRASSG---SKAKLRAFVVE- 834
Query: 221 RDYERVEKAVGRVEDKSSRPQVTVLNIEKD-YTVITMRSKDRPKLLFDIVCTLTDMQYVV 279
P+V + N D YTVI + DRP LL+ + ++ + +
Sbjct: 835 -------------------PEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNI 875
Query: 280 FHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCL 318
V T A FY+ + G I++ + + + L
Sbjct: 876 ASAHVATFGERARDVFYVTDLLGAQITAPTRQAAIKRAL 914
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 338 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 383
DR GLLS++T + + SL I A I+T G KV DTFYVTD+ G+ +
Sbjct: 852 DRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKI 897
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V I N TVI+V+ +++ G+L +V VL+D++L I A+I++ G +D F V
Sbjct: 831 PEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 75 DCDGKKIRDKEVIDYIQQRLET 96
D G KI + I RL+
Sbjct: 891 DLVGSKITSENRQMNIAARLKA 912
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T IE G DR GL SEV AVL+DL ++ +A I T ++ +VTD G I R
Sbjct: 844 TVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTD-LVGSKITSENR 902
Query: 177 LSTIKELLFNVLRGYDDFRKAKTSLSPPGIM 207
I L VL G D + + P GI+
Sbjct: 903 QMNIAARLKAVLAGEVDEARERM---PSGII 930
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 85/216 (39%), Gaps = 26/216 (12%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T I D P L + + A N+V A+I T +D A + + A + +R
Sbjct: 733 TEITVLSPDHPRLLTVIAGACAAAGANIVGAQIHTTSDGRALDTILVNREFSVAEDETRR 792
Query: 177 LSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDK 236
++I +L+ +VL G P I +R R + R
Sbjct: 793 AASIGKLIEDVLSGRKKL--------PDVIASRTR-----------------SKKRSRAF 827
Query: 237 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEF 295
+ P+VT+ N + +TVI + DR LL ++ L+D+ + + T + F
Sbjct: 828 TVTPEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTF 887
Query: 296 YIRHVDGLPISSEAERERVIQCLEAAIERRASEGLE 331
Y+ + G I+SE + + L+A + E E
Sbjct: 888 YVTDLVGSKITSENRQMNIAARLKAVLAGEVDEARE 923
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 383
+E+ DR GLLS+IT + + SL I+ A I+T G KV DTFYVTD+ G +
Sbjct: 840 IEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDLVGQKI 891
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP V I N+ TVI+V+ +++ G+L ++ VL+D++L I+ A I++ G +D F V
Sbjct: 824 PPSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 883
Query: 74 IDCDGKKI 81
D G+KI
Sbjct: 884 TDLVGQKI 891
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 32/216 (14%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPK 175
T I D P L + + A N+V+A+I+T +D RA +HV+ T A + +
Sbjct: 727 TEITVLSPDHPRLLAVIAGACAAAGANIVDAQIFTTSDGRALDTIHVSREFTDDA-DELR 785
Query: 176 RLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVED 235
R +TI ++ +VL G +RL +++ +A R +
Sbjct: 786 RAATIGRMIEDVLSG-------------------RKRLPEVI--------ATRARNRKKS 818
Query: 236 KSS--RPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAY 292
K+ P V + N + +TVI + DRP LL +I L+D+ + + T +
Sbjct: 819 KAFVIPPSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVI 878
Query: 293 QEFYIRHVDGLPISSEAERERVIQCLEAAIERRASE 328
FY+ + G IS +++R + ++A + E
Sbjct: 879 DTFYVTDLVGQKISGDSKRANITARMKAVMAEEEDE 914
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T IE DRPGL SE+ AVL+DL ++ +A I T ++ +VTD D KR
Sbjct: 838 TVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDLVGQKISGDSKR 897
Query: 177 LSTIKELLFNVLRGYDDFRK---------AKTSLSPPG 205
+ + + D+ R+ A T+ +PP
Sbjct: 898 ANITARMKAVMAEEEDELRERMPSGIIAPAATARTPPA 935
>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis
(strain HTCC2594) GN=glnD PE=3 SV=1
Length = 919
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 34/182 (18%)
Query: 248 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTE-AYQEFYIRHVDGLPIS 306
E+ T++T+ + D P L + I + + ++T R A + ++ G P +
Sbjct: 723 ERGATLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFA 782
Query: 307 SEAERERVIQCLEAAIERR-------ASEGLE-------------------------LEL 334
E + R+ Q + AI R A L+ +E+
Sbjct: 783 EERQLARIEQAIADAIANRGELVPKLAKRPLKQTRAGAFDVRPRVLFDNDASGRFTVIEV 842
Query: 335 CTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV-DPKIIDSIRR 393
DR LL+ + R EN + ++ A I+ G + DTFYVTD+TG + D +D+IR+
Sbjct: 843 NARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDLTGAKITDESRMDTIRQ 902
Query: 394 QI 395
+
Sbjct: 903 AL 904
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
PRV+ DN+ TVI+V++ ++ +L ++ + L + ++++ A+I++ G D F V
Sbjct: 825 PRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVT 884
Query: 75 DCDGKKIRDKEVIDYIQQRLETDASFA 101
D G KI D+ +D I+Q L AS A
Sbjct: 885 DLTGAKITDESRMDTIRQALLDAASDA 911
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 23/183 (12%)
Query: 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVIDCDGKKIRDKE 85
AT++ V + + G+ ++ ++ I A I ++ GW +D + V D G+ ++
Sbjct: 726 ATLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFAEER 785
Query: 86 VIDYIQQRLETDASFAPSLRSSVGVMPTEE---------------------HTSIEFTGT 124
+ I+Q + + L + P ++ T IE
Sbjct: 786 QLARIEQAIADAIANRGELVPKLAKRPLKQTRAGAFDVRPRVLFDNDASGRFTVIEVNAR 845
Query: 125 DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELL 184
DR L + + L + V +A I + +RAA +VTD TG I D R+ TI++ L
Sbjct: 846 DRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTD-LTGAKITDESRMDTIRQAL 904
Query: 185 FNV 187
+
Sbjct: 905 LDA 907
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 33/217 (15%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T + D PGLF + + N+++A I T + A ++ G + ++
Sbjct: 727 TLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFAEERQ 786
Query: 177 LSTIKELLFNVL--RGYDDFRKAKTSL--SPPGIMNRERRLHQIMFDDRDYERVEKAVGR 232
L+ I++ + + + RG + AK L + G + R ++FD+
Sbjct: 787 LARIEQAIADAIANRGELVPKLAKRPLKQTRAGAFDVRPR---VLFDN------------ 831
Query: 233 VEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAY 292
D S R +TVI + ++DR LL + L + Q +V + A
Sbjct: 832 --DASGR-----------FTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAA 878
Query: 293 QEFYIRHVDGLPISSEAERERVIQC-LEAAIERRASE 328
FY+ + G I+ E+ + + Q L+AA + R +E
Sbjct: 879 DTFYVTDLTGAKITDESRMDTIRQALLDAASDARQAE 915
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 338 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 383
DR GLLS++T + + SL I A I+T G KV DTFYVTD+ G+ +
Sbjct: 852 DRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKI 897
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V I N TVI+V+ +++ G+L +V VL+D++L I A+I++ G +D F V
Sbjct: 831 PEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 75 DCDGKKIRDKEVIDYIQQRLET 96
D G KI + I RL+
Sbjct: 891 DLVGSKITSENRQMNIAARLKA 912
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T IE G DR GL SEV AVL+DL ++ +A I T ++ +VTD G I R
Sbjct: 844 TVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTD-LVGSKITSENR 902
Query: 177 LSTIKELLFNVLRGYDDFRKAKTSLSPPGIM 207
I L VL G D + + P GI+
Sbjct: 903 QMNIAARLKAVLAGEVDEARERM---PSGII 930
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 87/216 (40%), Gaps = 26/216 (12%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T I D P L + + A N+V A+I T +D A + + A + +R
Sbjct: 733 TEITVLSPDHPRLLTVIAGACAAAGANIVGAQIHTTSDGRALDTILVNREFSVAEDETRR 792
Query: 177 LSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDK 236
++I +L+ +VL G P I +R R V+K R
Sbjct: 793 AASIGKLIEDVLSGRKRL--------PEVIASRTR--------------VKK---RSRAF 827
Query: 237 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEF 295
+ P+VT+ N + +TVI + DR LL ++ L+D+ + + T + F
Sbjct: 828 TVTPEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTF 887
Query: 296 YIRHVDGLPISSEAERERVIQCLEAAIERRASEGLE 331
Y+ + G I+SE + + L+A + E E
Sbjct: 888 YVTDLVGSKITSENRQMNIAARLKAVLAGEVDEARE 923
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V I N+ TVI+++ +++ G+L +V VL D++L I A I++ G +D F VI
Sbjct: 826 PHVTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVI 885
Query: 75 DCDGKKIRDKEVIDYIQQRLETDASFAP 102
D G+KI ++ I RL+ S P
Sbjct: 886 DLVGQKITNENRQGSISVRLKAVMSEQP 913
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 383
+E+ DR+GLL+++T + + SL I A I+T G KV DTFYV D+ G +
Sbjct: 841 IEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVIDLVGQKI 892
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T IE DR GL +EV AVLADL ++ +A I T ++ +V D G I + R
Sbjct: 839 TVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVID-LVGQKITNENR 897
Query: 177 LSTIKELLFNVLRGYDDFRKAKTSLSPPGIM 207
+I L V+ D + + P GI+
Sbjct: 898 QGSISVRLKAVMSEQPDELREQM---PSGII 925
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V++DN +TV++ ++ G+L + + ++D L I A+I G +D F V+
Sbjct: 831 PAVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYVV 890
Query: 75 DCDGKKIRD 83
D DG+K+ D
Sbjct: 891 DADGRKLTD 899
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 63/167 (37%), Gaps = 37/167 (22%)
Query: 260 DRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERE--RVIQ 316
DRP+L D+ +T V V T R +A FY++ G P S R R+ +
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDASGQPFGSHDPRALARLAE 800
Query: 317 CLEAA-----------------------------IERRASE-GLELELCTEDRVGLLSDI 346
L A ++ ASE +E DR GLL+ +
Sbjct: 801 TLACAARGEPVAREPRKPQDLGRTAAFAITPAVMLDNEASETSTVVEASGRDRPGLLAAL 860
Query: 347 TRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRR 393
R + LSI A I G + D FYV D G K+ D+ +R
Sbjct: 861 ARTISDAGLSILSAHIDGYGERAVDAFYVVDADGR----KLTDARKR 903
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 30/190 (15%)
Query: 125 DRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTG-YAIKDPKRLSTIKE 182
DRP LF ++ + NV+ A ++T +A V +V D S + DP+ L+ + E
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDASGQPFGSHDPRALARLAE 800
Query: 183 LLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQV 242
L RG P + RE R Q + GR + P V
Sbjct: 801 TLACAARG-----------EP---VAREPRKPQDL-------------GRTAAFAITPAV 833
Query: 243 TVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVD 301
+ N + TV+ +DRP LL + T++D + ++ A FY+ D
Sbjct: 834 MLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYVVDAD 893
Query: 302 GLPISSEAER 311
G ++ +R
Sbjct: 894 GRKLTDARKR 903
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 22/144 (15%)
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKI--RDKEVIDYIQQRLETDASFAPSLR------ 105
V+ +S G +DVF V D G+ D + + + L A P R
Sbjct: 760 VMGARVFTSRAGQALDVFYVQDASGQPFGSHDPRALARLAETLACAARGEPVAREPRKPQ 819
Query: 106 -----SSVGVMP--------TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152
++ + P +E T +E +G DRPGL + + ++D ++++A I +
Sbjct: 820 DLGRTAAFAITPAVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHIDGY 879
Query: 153 NDRAAAVVHVTDHSTGYAIKDPKR 176
+RA +V D + G + D ++
Sbjct: 880 GERAVDAFYVVD-ADGRKLTDARK 902
>sp|A5UBF9|GLND_HAEIE [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
PittEE) GN=glnD PE=3 SV=1
Length = 863
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 328 EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKI 387
E E+EL D+ GLL+ +++IF E +L++ A+I+T+G K +D F +T+ G +D +
Sbjct: 791 EHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQQ 850
Query: 388 IDSIR----RQIG 396
+ +R R IG
Sbjct: 851 REILRNVLYRNIG 863
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 22/145 (15%)
Query: 60 ISSDGGWFMDVFNVIDCDGKKI---RDKEVIDYIQQRLETDA----SFAPSLRSSVGVMP 112
I++ G+ D F + + +G+ + R +E+ + L+++ S P+ + +
Sbjct: 720 ITTQDGYVFDSFIITELNGELVEFDRRRELEQALTLALQSEKLSALSITPNRQLQHFTVQ 779
Query: 113 TE---------EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
T+ EHT +E D+ GL ++V + ++L+ N++NA+I T ++A +T
Sbjct: 780 TDVRFLHENKKEHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKITTVGEKAEDFFILT 839
Query: 164 DHSTGYAIKDPKRLSTIKELLFNVL 188
+ G A+ +R E+L NVL
Sbjct: 840 NQ-FGQALDSQQR-----EILRNVL 858
>sp|A6WV84|GLND_OCHA4 [Protein-PII] uridylyltransferase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=glnD PE=3 SV=1
Length = 934
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T IE G DRPGL SE+ +++DL ++ +A I T ++ +VTD G+ I + R
Sbjct: 847 TVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKISNATR 905
Query: 177 LSTIKELLFNVLRG 190
I+ L VL G
Sbjct: 906 QGNIRRKLLGVLSG 919
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 338 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 383
DR GLLS++T + + SL I A I+T G KV D+FYVTD+ G+ +
Sbjct: 855 DRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKI 900
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
PRV I+N TVI+V+ +++ G+L ++ +++D++L I A+I++ G +D F V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DCDGKKIRDKEVIDYIQQRL 94
D G KI + I+++L
Sbjct: 894 DLVGHKISNATRQGNIRRKL 913
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 26/192 (13%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T I D P L S + A N+V+A+I+T D A + + +R
Sbjct: 736 TEITVLAPDHPRLLSIITGACAAAGANIVDAQIFTTGDGRALDTILISREFDTDDDERRR 795
Query: 177 LSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDK 236
+ +++ +VL G + P +R KA +VE
Sbjct: 796 AERVGKVIEDVLSGKAHLPDVLAKRTKP-------------------KRAAKAF-KVE-- 833
Query: 237 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEF 295
P+V + N + +TVI + DRP LL ++ ++D+ + + T + F
Sbjct: 834 ---PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSF 890
Query: 296 YIRHVDGLPISS 307
Y+ + G IS+
Sbjct: 891 YVTDLVGHKISN 902
>sp|Q9KPV0|GLND_VIBCH [Protein-PII] uridylyltransferase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=glnD PE=3
SV=2
Length = 876
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 18/168 (10%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNV 73
P V++ T + + + ++ + V+ L+ NL + A I +S G+ +D F V
Sbjct: 679 PLVLLSKKATRGGTEVFIYTKDQAALFATVVAELDRRNLNVHDAQIMASKDGYVLDTFMV 738
Query: 74 IDCDGKKI---RDKEVIDYIQQRLE------TDASFAP------SLRSSVGVMPTE--EH 116
+D +G+ I R + +I ++ LE A P +++ V +PT+ +
Sbjct: 739 LDQNGQAIEEDRHQALIRHLVHVLEDGRPTTQKARRIPRNLQHFKVKTQVDFLPTKSKKR 798
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
T +EF D PGL + V A A+L+ ++ A+I T +RA + +T+
Sbjct: 799 TLMEFVALDTPGLLATVGATFAELNLDLHAAKITTIGERAEDLFILTN 846
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 297 IRHV-----DGLPISSEAER-ERVIQCLEAAIE-----RRASEGLELELCTEDRVGLLSD 345
IRH+ DG P + +A R R +Q + + ++ + +E D GLL+
Sbjct: 755 IRHLVHVLEDGRPTTQKARRIPRNLQHFKVKTQVDFLPTKSKKRTLMEFVALDTPGLLAT 814
Query: 346 ITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQI 395
+ F E +L + A+I+TIG + +D F +T+ G ++ + +R ++
Sbjct: 815 VGATFAELNLDLHAAKITTIGERAEDLFILTNAQGTRLNEEEEQHLREKL 864
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 383
+E+ DR GLL+D+T + + SL I A I+T G KV DTFYVTD+ G V
Sbjct: 842 IEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVTDLFGQKV 893
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP V I N TVI+V+ +++ G+L + V+ D++L I A I++ G +D F V
Sbjct: 826 PPSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYV 885
Query: 74 IDCDGKKIRDKEVIDYIQQRLET 96
D G+K+ + I QRL+
Sbjct: 886 TDLFGQKVTNDNRQASIAQRLKA 908
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 92 QRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151
+R ++ + PS+ S G+ + + T IE DRPGL +++ AV+ADL ++ +A I T
Sbjct: 817 RRKKSAFTIPPSVTISNGL--SNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITT 874
Query: 152 HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD 193
++ +VTD G + + R ++I + L V+ +D
Sbjct: 875 FGEKVIDTFYVTD-LFGQKVTNDNRQASIAQRLKAVMSEQED 915
Score = 38.9 bits (89), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 240 PQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR 298
P VT+ N + +TVI + DRP LL D+ + D+ + + T + FY+
Sbjct: 827 PSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVT 886
Query: 299 HVDGLPISSEAERERVIQCLEAAIERRASE 328
+ G ++++ + + Q L+A + + E
Sbjct: 887 DLFGQKVTNDNRQASIAQRLKAVMSEQEDE 916
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 64/163 (39%), Gaps = 33/163 (20%)
Query: 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAER- 311
+ + +KDR L D+ ++ + V V T R +A FY++ V G P E R
Sbjct: 738 VVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRA 797
Query: 312 -ERVIQCLEAAIE--------RRASEGLE----------------------LELCTEDRV 340
R+ LEAA + RR SE +E DR
Sbjct: 798 LRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRP 857
Query: 341 GLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 383
GLL + + +++LSI+ A I G + D FYV G V
Sbjct: 858 GLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKV 900
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V IDN+ DATV++ ++ G+L + + L D L I+ A+I G +D F V
Sbjct: 834 PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ 893
Query: 75 DCDGKKIRD 83
+G K+ D
Sbjct: 894 TTEGGKVTD 902
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 73/200 (36%), Gaps = 38/200 (19%)
Query: 110 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG- 168
V P + DR GLF+++ ++ L NVV A ++T A V TG
Sbjct: 729 VRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGA 788
Query: 169 -YAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVE 227
+ ++P+ L + + L +G D VE
Sbjct: 789 PFGCENPRALRRLADALEAAGKG-------------------------------DALAVE 817
Query: 228 KAVGRVEDKSSR----PQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHG 282
G + +++ P VT+ N D TV+ +DRP LL + TL D +
Sbjct: 818 PRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSA 877
Query: 283 MVNTGRTEAYQEFYIRHVDG 302
++ A FY++ +G
Sbjct: 878 HIDGYGERAVDAFYVQTTEG 897
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 98 ASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAA 157
A+FA + ++ + + T +E +G DRPGL + LAD ++ +A I + +RA
Sbjct: 828 AAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAV 887
Query: 158 AVVHVTDHSTG 168
+V G
Sbjct: 888 DAFYVQTTEGG 898
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 64/163 (39%), Gaps = 33/163 (20%)
Query: 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAER- 311
+ + +KDR L D+ ++ + V V T R +A FY++ V G P E R
Sbjct: 738 VVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRA 797
Query: 312 -ERVIQCLEAAIE--------RRASEGLE----------------------LELCTEDRV 340
R+ LEAA + RR SE +E DR
Sbjct: 798 LRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRP 857
Query: 341 GLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPV 383
GLL + + +++LSI+ A I G + D FYV G V
Sbjct: 858 GLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKV 900
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V IDN+ DATV++ ++ G+L + + L D L I+ A+I G +D F V
Sbjct: 834 PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ 893
Query: 75 DCDGKKIRD 83
+G K+ D
Sbjct: 894 TTEGGKVTD 902
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 73/200 (36%), Gaps = 38/200 (19%)
Query: 110 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG- 168
V P + DR GLF+++ ++ L NVV A ++T A V TG
Sbjct: 729 VRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGA 788
Query: 169 -YAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVE 227
+ ++P+ L + + L +G D VE
Sbjct: 789 PFGCENPRALRRLADALEAAGKG-------------------------------DALAVE 817
Query: 228 KAVGRVEDKSSR----PQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHG 282
G + +++ P VT+ N D TV+ +DRP LL + TL D +
Sbjct: 818 PRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSA 877
Query: 283 MVNTGRTEAYQEFYIRHVDG 302
++ A FY++ +G
Sbjct: 878 HIDGYGERAVDAFYVQTTEG 897
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 98 ASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAA 157
A+FA + ++ + + T +E +G DRPGL + LAD ++ +A I + +RA
Sbjct: 828 AAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAV 887
Query: 158 AVVHVTDHSTG 168
+V G
Sbjct: 888 DAFYVQTTEGG 898
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,167,702
Number of Sequences: 539616
Number of extensions: 6651257
Number of successful extensions: 18535
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 17705
Number of HSP's gapped (non-prelim): 781
length of query: 441
length of database: 191,569,459
effective HSP length: 121
effective length of query: 320
effective length of database: 126,275,923
effective search space: 40408295360
effective search space used: 40408295360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)