Query 013535
Match_columns 441
No_of_seqs 336 out of 2058
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 2.4E-27 5.2E-32 263.5 23.0 161 237-398 662-852 (854)
2 PRK05007 PII uridylyl-transfer 100.0 3.5E-27 7.5E-32 263.1 23.2 161 238-399 687-878 (884)
3 PRK01759 glnD PII uridylyl-tra 100.0 9.4E-27 2E-31 258.8 25.8 177 11-189 661-854 (854)
4 PRK05007 PII uridylyl-transfer 99.9 7.2E-26 1.6E-30 252.6 26.5 176 13-190 687-880 (884)
5 PRK00275 glnD PII uridylyl-tra 99.9 3E-25 6.6E-30 247.6 27.7 179 13-192 687-889 (895)
6 PRK00275 glnD PII uridylyl-tra 99.9 8.1E-25 1.8E-29 244.2 25.9 182 114-323 702-886 (895)
7 PRK04374 PII uridylyl-transfer 99.9 9.5E-25 2.1E-29 242.2 25.3 175 13-189 675-867 (869)
8 PRK03059 PII uridylyl-transfer 99.9 2.1E-24 4.5E-29 240.0 26.4 173 12-189 663-855 (856)
9 TIGR01693 UTase_glnD [Protein- 99.9 1.4E-24 2.9E-29 242.7 23.2 163 237-399 653-849 (850)
10 PRK03381 PII uridylyl-transfer 99.9 3.5E-24 7.5E-29 236.1 24.3 169 13-185 586-773 (774)
11 COG2844 GlnD UTP:GlnB (protein 99.9 1.9E-24 4.2E-29 228.9 19.3 163 237-400 669-862 (867)
12 PRK04374 PII uridylyl-transfer 99.9 1.1E-23 2.3E-28 233.9 25.8 180 111-322 685-866 (869)
13 TIGR01693 UTase_glnD [Protein- 99.9 2.5E-23 5.4E-28 232.6 26.0 185 111-322 663-849 (850)
14 PRK05092 PII uridylyl-transfer 99.9 2.4E-23 5.3E-28 234.2 25.9 179 13-192 718-918 (931)
15 PRK05092 PII uridylyl-transfer 99.9 5.5E-23 1.2E-27 231.3 27.3 189 109-323 725-915 (931)
16 PRK03059 PII uridylyl-transfer 99.9 4.1E-23 8.9E-28 229.6 25.9 181 110-322 672-854 (856)
17 COG2844 GlnD UTP:GlnB (protein 99.9 2.3E-23 4.9E-28 220.9 21.9 177 12-190 669-863 (867)
18 PRK03381 PII uridylyl-transfer 99.9 7.7E-23 1.7E-27 225.5 24.8 178 110-318 594-772 (774)
19 cd04895 ACT_ACR_1 ACT domain-c 99.8 2.7E-19 5.9E-24 138.7 10.5 69 329-397 1-70 (72)
20 cd04897 ACT_ACR_3 ACT domain-c 99.8 3.2E-19 6.9E-24 139.3 9.8 70 330-399 2-72 (75)
21 cd04896 ACT_ACR-like_3 ACT dom 99.8 4.1E-18 8.9E-23 133.1 9.4 70 330-400 1-73 (75)
22 cd04897 ACT_ACR_3 ACT domain-c 99.7 1.2E-17 2.6E-22 130.4 11.2 75 251-325 1-75 (75)
23 cd04895 ACT_ACR_1 ACT domain-c 99.7 7.4E-17 1.6E-21 125.1 10.5 69 116-185 1-69 (72)
24 PRK11589 gcvR glycine cleavage 99.7 5.8E-16 1.3E-20 142.9 13.5 140 249-396 6-163 (190)
25 cd04896 ACT_ACR-like_3 ACT dom 99.7 5.5E-16 1.2E-20 121.1 10.4 72 117-190 1-74 (75)
26 cd04925 ACT_ACR_2 ACT domain-c 99.6 4.4E-15 9.6E-20 116.6 11.2 73 117-190 1-74 (74)
27 PRK11589 gcvR glycine cleavage 99.6 3.5E-14 7.6E-19 131.0 15.3 152 24-190 5-168 (190)
28 cd04925 ACT_ACR_2 ACT domain-c 99.6 1.9E-14 4E-19 113.1 10.8 71 252-322 1-72 (74)
29 cd04900 ACT_UUR-like_1 ACT dom 99.6 1.7E-14 3.7E-19 112.9 10.6 70 252-321 2-72 (73)
30 cd04900 ACT_UUR-like_1 ACT dom 99.6 2.3E-14 5E-19 112.2 10.8 71 117-188 2-73 (73)
31 COG2716 GcvR Glycine cleavage 99.5 1.3E-14 2.9E-19 128.3 8.6 142 248-397 2-161 (176)
32 cd04927 ACT_ACR-like_2 Second 99.5 7.8E-14 1.7E-18 110.1 11.0 71 118-190 2-73 (76)
33 cd04927 ACT_ACR-like_2 Second 99.5 1.3E-13 2.8E-18 108.8 11.3 70 253-323 2-72 (76)
34 cd04928 ACT_TyrKc Uncharacteri 99.5 3.7E-13 8.1E-18 103.1 9.9 65 28-94 2-67 (68)
35 cd04928 ACT_TyrKc Uncharacteri 99.4 3.8E-12 8.3E-17 97.5 9.9 65 252-322 2-67 (68)
36 COG2716 GcvR Glycine cleavage 99.3 1E-11 2.2E-16 110.1 10.0 154 25-188 3-163 (176)
37 PRK00227 glnD PII uridylyl-tra 99.3 1.4E-11 3E-16 133.7 12.3 120 252-376 547-674 (693)
38 cd04926 ACT_ACR_4 C-terminal 99.3 3E-11 6.5E-16 94.3 10.4 67 252-319 2-68 (72)
39 cd04926 ACT_ACR_4 C-terminal 99.3 3.9E-11 8.4E-16 93.7 10.2 67 117-185 2-68 (72)
40 PRK00227 glnD PII uridylyl-tra 99.2 1.5E-10 3.2E-15 125.8 15.2 144 28-190 547-692 (693)
41 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 1.4E-10 3.1E-15 89.4 10.3 69 330-398 1-69 (70)
42 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 2.3E-10 5E-15 88.2 10.3 70 117-188 1-70 (70)
43 cd04873 ACT_UUR-ACR-like ACT d 98.9 2.3E-08 4.9E-13 76.6 10.3 70 117-188 1-70 (70)
44 cd04873 ACT_UUR-ACR-like ACT d 98.8 3.5E-08 7.6E-13 75.6 10.2 68 330-397 1-68 (70)
45 PF13740 ACT_6: ACT domain; PD 98.6 2.7E-07 5.9E-12 72.7 9.4 63 27-96 2-64 (76)
46 PF13740 ACT_6: ACT domain; PD 98.6 4E-07 8.6E-12 71.7 10.1 66 116-189 2-67 (76)
47 cd04893 ACT_GcvR_1 ACT domains 98.5 1.1E-06 2.4E-11 69.3 8.9 48 28-75 2-49 (77)
48 cd04894 ACT_ACR-like_1 ACT dom 98.4 7.7E-07 1.7E-11 65.7 7.0 59 28-86 1-59 (69)
49 COG4747 ACT domain-containing 98.4 7E-06 1.5E-10 68.6 12.1 114 28-164 4-118 (142)
50 cd04870 ACT_PSP_1 CT domains f 98.3 2.2E-06 4.9E-11 67.2 7.6 62 331-397 1-62 (75)
51 cd04870 ACT_PSP_1 CT domains f 98.3 3.2E-06 7E-11 66.3 8.3 49 30-78 2-50 (75)
52 PF01842 ACT: ACT domain; Int 98.3 8.9E-06 1.9E-10 61.3 10.0 61 117-186 1-63 (66)
53 COG4747 ACT domain-containing 98.3 3.3E-05 7.2E-10 64.6 13.5 111 252-375 4-116 (142)
54 PF01842 ACT: ACT domain; Int 98.2 1.3E-05 2.8E-10 60.3 10.1 61 252-320 1-63 (66)
55 cd04893 ACT_GcvR_1 ACT domains 98.2 8.9E-06 1.9E-10 64.2 9.1 63 117-187 2-64 (77)
56 cd04894 ACT_ACR-like_1 ACT dom 98.1 1.1E-05 2.5E-10 59.6 6.8 67 252-321 1-67 (69)
57 TIGR00655 PurU formyltetrahydr 98.1 0.0001 2.2E-09 72.5 15.3 116 29-151 2-119 (280)
58 cd04875 ACT_F4HF-DF N-terminal 98.1 7.1E-06 1.5E-10 64.0 5.4 65 331-397 1-65 (74)
59 cd04872 ACT_1ZPV ACT domain pr 98.0 1.5E-05 3.4E-10 64.4 7.3 49 28-76 2-50 (88)
60 PRK00194 hypothetical protein; 98.0 2E-05 4.4E-10 63.8 7.6 50 27-76 3-52 (90)
61 PRK07431 aspartate kinase; Pro 98.0 0.022 4.7E-07 62.1 33.3 258 34-361 278-554 (587)
62 PRK13010 purU formyltetrahydro 98.0 0.00015 3.3E-09 71.6 14.7 118 27-151 9-128 (289)
63 cd04869 ACT_GcvR_2 ACT domains 98.0 1.7E-05 3.7E-10 62.7 6.2 66 331-397 1-68 (81)
64 cd04869 ACT_GcvR_2 ACT domains 98.0 4.7E-05 1E-09 60.2 8.7 49 29-77 1-55 (81)
65 cd04875 ACT_F4HF-DF N-terminal 97.9 7.9E-05 1.7E-09 58.1 9.2 48 29-76 1-50 (74)
66 cd04872 ACT_1ZPV ACT domain pr 97.9 3.5E-05 7.7E-10 62.3 7.2 67 117-189 2-68 (88)
67 PRK06027 purU formyltetrahydro 97.8 0.00049 1.1E-08 68.0 14.1 118 26-151 5-124 (286)
68 PRK00194 hypothetical protein; 97.8 0.00011 2.3E-09 59.5 7.7 48 251-298 3-50 (90)
69 PF13291 ACT_4: ACT domain; PD 97.7 0.00035 7.5E-09 55.2 9.3 65 115-186 5-71 (80)
70 PRK13011 formyltetrahydrofolat 97.7 0.0014 3E-08 64.7 15.5 116 27-151 7-124 (286)
71 PF13291 ACT_4: ACT domain; PD 97.7 0.00034 7.4E-09 55.2 9.0 64 329-397 6-71 (80)
72 COG3830 ACT domain-containing 97.7 5.1E-05 1.1E-09 60.8 4.0 50 27-76 3-52 (90)
73 COG0788 PurU Formyltetrahydrof 97.5 0.00069 1.5E-08 64.8 10.6 66 26-92 6-73 (287)
74 PRK06027 purU formyltetrahydro 97.4 0.0048 1.1E-07 61.0 15.0 67 250-321 5-73 (286)
75 cd04887 ACT_MalLac-Enz ACT_Mal 97.4 0.0018 4E-08 49.9 9.6 61 119-186 2-63 (74)
76 PRK13010 purU formyltetrahydro 97.4 0.0041 8.9E-08 61.5 13.9 108 251-362 9-126 (289)
77 TIGR00655 PurU formyltetrahydr 97.3 0.0054 1.2E-07 60.4 14.6 105 253-362 2-117 (280)
78 cd04887 ACT_MalLac-Enz ACT_Mal 97.3 0.0024 5.3E-08 49.2 9.5 61 332-397 2-63 (74)
79 PRK13011 formyltetrahydrofolat 97.3 0.0084 1.8E-07 59.3 14.9 108 251-364 7-124 (286)
80 PRK06737 acetolactate synthase 97.2 0.0026 5.7E-08 50.0 8.5 67 330-402 3-70 (76)
81 COG3830 ACT domain-containing 97.2 0.00061 1.3E-08 54.7 4.6 48 251-298 3-50 (90)
82 cd04877 ACT_TyrR N-terminal AC 97.1 0.0024 5.1E-08 49.7 7.8 59 331-397 2-60 (74)
83 cd04878 ACT_AHAS N-terminal AC 97.1 0.0051 1.1E-07 46.4 9.1 62 331-397 2-64 (72)
84 PRK08178 acetolactate synthase 97.1 0.0037 8E-08 51.1 8.4 67 114-187 6-72 (96)
85 cd04886 ACT_ThrD-II-like C-ter 97.0 0.0068 1.5E-07 45.8 9.2 61 119-186 1-66 (73)
86 cd04877 ACT_TyrR N-terminal AC 97.0 0.0041 8.8E-08 48.4 7.8 59 118-186 2-60 (74)
87 PRK06737 acetolactate synthase 97.0 0.0052 1.1E-07 48.3 8.2 62 117-186 3-66 (76)
88 cd04889 ACT_PDH-BS-like C-term 97.0 0.0027 5.9E-08 46.4 6.3 46 332-377 1-47 (56)
89 cd04908 ACT_Bt0572_1 N-termina 97.0 0.0048 1E-07 46.8 7.8 44 330-375 2-45 (66)
90 CHL00100 ilvH acetohydroxyacid 96.9 0.0031 6.7E-08 57.6 7.7 64 330-397 3-66 (174)
91 cd04889 ACT_PDH-BS-like C-term 96.9 0.0029 6.3E-08 46.2 6.2 46 119-164 1-47 (56)
92 CHL00100 ilvH acetohydroxyacid 96.9 0.0059 1.3E-07 55.8 9.3 65 117-189 3-69 (174)
93 cd04886 ACT_ThrD-II-like C-ter 96.9 0.0072 1.6E-07 45.7 8.5 34 332-365 1-34 (73)
94 cd04909 ACT_PDH-BS C-terminal 96.9 0.0063 1.4E-07 46.3 8.1 47 330-376 2-50 (69)
95 PRK13562 acetolactate synthase 96.9 0.006 1.3E-07 48.7 7.8 64 117-187 3-68 (84)
96 cd04908 ACT_Bt0572_1 N-termina 96.9 0.0043 9.3E-08 47.1 6.8 45 117-163 2-46 (66)
97 PRK08178 acetolactate synthase 96.8 0.0069 1.5E-07 49.6 8.0 71 328-404 7-77 (96)
98 PRK13562 acetolactate synthase 96.8 0.0062 1.3E-07 48.6 7.3 65 330-397 3-67 (84)
99 cd04909 ACT_PDH-BS C-terminal 96.8 0.013 2.9E-07 44.5 9.0 61 117-186 2-64 (69)
100 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.7 0.011 2.5E-07 45.3 8.6 64 330-397 1-65 (79)
101 cd04888 ACT_PheB-BS C-terminal 96.7 0.011 2.5E-07 45.6 8.6 62 118-186 2-65 (76)
102 TIGR00119 acolac_sm acetolacta 96.7 0.01 2.2E-07 53.4 9.0 64 330-397 2-65 (157)
103 TIGR00119 acolac_sm acetolacta 96.7 0.013 2.8E-07 52.7 9.6 63 117-187 2-66 (157)
104 PRK11895 ilvH acetolactate syn 96.7 0.015 3.3E-07 52.4 9.8 63 117-187 3-67 (161)
105 cd04879 ACT_3PGDH-like ACT_3PG 96.6 0.014 3E-07 43.7 8.2 44 332-375 2-47 (71)
106 PRK11895 ilvH acetolactate syn 96.6 0.015 3.3E-07 52.4 9.5 68 330-403 3-71 (161)
107 PRK11152 ilvM acetolactate syn 96.5 0.015 3.3E-07 45.7 7.9 66 330-403 4-71 (76)
108 COG0788 PurU Formyltetrahydrof 96.5 0.011 2.4E-07 56.7 8.5 66 250-320 6-73 (287)
109 cd04905 ACT_CM-PDT C-terminal 96.5 0.018 3.9E-07 45.4 8.4 48 330-377 2-50 (80)
110 PRK11152 ilvM acetolactate syn 96.5 0.014 3.1E-07 45.8 7.6 61 117-186 4-66 (76)
111 cd04878 ACT_AHAS N-terminal AC 96.4 0.031 6.7E-07 42.0 9.0 61 118-186 2-64 (72)
112 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.4 0.022 4.8E-07 43.7 8.3 61 118-185 2-64 (79)
113 cd04903 ACT_LSD C-terminal ACT 96.4 0.021 4.6E-07 42.8 7.9 33 332-364 2-34 (71)
114 cd04882 ACT_Bt0572_2 C-termina 96.4 0.013 2.8E-07 43.7 6.4 36 331-366 1-36 (65)
115 cd04888 ACT_PheB-BS C-terminal 96.4 0.032 6.9E-07 43.0 8.8 64 29-97 2-66 (76)
116 cd04879 ACT_3PGDH-like ACT_3PG 96.3 0.024 5.3E-07 42.4 8.0 44 30-73 2-47 (71)
117 cd04874 ACT_Af1403 N-terminal 96.2 0.032 6.8E-07 42.1 8.2 46 118-163 2-48 (72)
118 cd04902 ACT_3PGDH-xct C-termin 96.2 0.025 5.3E-07 43.2 7.4 44 332-375 2-47 (73)
119 PRK07431 aspartate kinase; Pro 96.1 2.7 5.8E-05 45.9 28.5 191 25-283 346-554 (587)
120 cd04876 ACT_RelA-SpoT ACT dom 96.0 0.058 1.3E-06 39.3 8.6 61 332-397 1-62 (71)
121 cd04883 ACT_AcuB C-terminal AC 96.0 0.058 1.3E-06 41.1 8.6 47 28-74 2-50 (72)
122 cd04898 ACT_ACR-like_4 ACT dom 96.0 0.013 2.8E-07 45.3 4.7 71 119-190 3-76 (77)
123 cd04874 ACT_Af1403 N-terminal 96.0 0.044 9.6E-07 41.2 7.8 35 331-365 2-36 (72)
124 cd04901 ACT_3PGDH C-terminal A 95.9 0.011 2.3E-07 44.8 4.0 44 332-375 2-45 (69)
125 cd04902 ACT_3PGDH-xct C-termin 95.9 0.039 8.5E-07 42.0 7.2 46 30-75 2-49 (73)
126 cd04903 ACT_LSD C-terminal ACT 95.9 0.064 1.4E-06 40.1 8.3 44 30-73 2-47 (71)
127 cd04884 ACT_CBS C-terminal ACT 95.9 0.062 1.3E-06 41.3 8.2 34 119-152 2-35 (72)
128 cd04905 ACT_CM-PDT C-terminal 95.8 0.11 2.3E-06 40.9 9.7 48 117-164 2-50 (80)
129 PRK08577 hypothetical protein; 95.8 0.094 2E-06 45.9 10.2 70 111-186 51-122 (136)
130 cd04901 ACT_3PGDH C-terminal A 95.8 0.012 2.6E-07 44.5 3.9 44 30-73 2-45 (69)
131 PF13710 ACT_5: ACT domain; PD 95.7 0.044 9.5E-07 41.4 6.6 55 125-187 1-57 (63)
132 cd04882 ACT_Bt0572_2 C-termina 95.6 0.026 5.6E-07 42.0 5.2 35 119-153 2-36 (65)
133 cd04884 ACT_CBS C-terminal ACT 95.6 0.08 1.7E-06 40.6 8.0 34 332-365 2-35 (72)
134 PF13710 ACT_5: ACT domain; PD 95.6 0.06 1.3E-06 40.7 7.1 56 338-397 1-56 (63)
135 PRK08577 hypothetical protein; 95.6 0.18 3.9E-06 44.1 11.2 59 16-74 43-105 (136)
136 cd04876 ACT_RelA-SpoT ACT dom 95.6 0.12 2.7E-06 37.5 8.7 60 119-185 1-61 (71)
137 PRK04435 hypothetical protein; 95.6 0.14 3E-06 45.6 10.3 73 19-96 61-134 (147)
138 cd04880 ACT_AAAH-PDT-like ACT 95.4 0.12 2.5E-06 40.1 8.3 48 333-381 3-51 (75)
139 cd02116 ACT ACT domains are co 95.3 0.065 1.4E-06 37.0 6.2 35 332-366 1-35 (60)
140 TIGR00656 asp_kin_monofn aspar 95.2 0.75 1.6E-05 47.6 16.2 105 27-146 260-370 (401)
141 cd04898 ACT_ACR-like_4 ACT dom 95.2 0.022 4.7E-07 44.1 3.3 66 331-397 2-72 (77)
142 cd04883 ACT_AcuB C-terminal AC 95.1 0.098 2.1E-06 39.8 7.0 34 330-363 2-35 (72)
143 PRK07334 threonine dehydratase 95.0 0.16 3.4E-06 52.8 10.3 66 114-186 324-394 (403)
144 PRK04435 hypothetical protein; 95.0 0.22 4.8E-06 44.3 9.7 68 247-319 65-133 (147)
145 cd02116 ACT ACT domains are co 94.6 0.14 2.9E-06 35.3 6.2 35 119-153 1-35 (60)
146 PRK06635 aspartate kinase; Rev 94.4 0.95 2.1E-05 46.9 14.3 102 34-148 270-375 (404)
147 PRK06635 aspartate kinase; Rev 94.3 0.95 2.1E-05 46.8 14.1 103 250-361 261-375 (404)
148 cd04904 ACT_AAAH ACT domain of 94.2 0.22 4.9E-06 38.6 7.0 48 332-380 3-51 (74)
149 PRK07334 threonine dehydratase 94.1 0.33 7.2E-06 50.3 10.1 64 251-320 326-394 (403)
150 TIGR00719 sda_beta L-serine de 94.0 0.2 4.3E-06 47.2 7.6 59 327-389 146-206 (208)
151 TIGR00656 asp_kin_monofn aspar 94.0 1.1 2.4E-05 46.4 13.9 101 249-360 258-371 (401)
152 cd04931 ACT_PAH ACT domain of 94.0 0.28 6.1E-06 39.8 7.4 51 330-381 15-66 (90)
153 cd04871 ACT_PSP_2 ACT domains 93.9 0.039 8.5E-07 44.2 2.2 61 118-186 1-71 (84)
154 PRK06291 aspartate kinase; Pro 93.7 2.8 6.1E-05 44.4 16.5 107 27-148 321-433 (465)
155 cd04871 ACT_PSP_2 ACT domains 93.4 0.051 1.1E-06 43.5 2.1 61 331-397 1-71 (84)
156 PRK08210 aspartate kinase I; R 93.3 2.8 6.1E-05 43.4 15.4 99 26-146 270-372 (403)
157 PRK11899 prephenate dehydratas 93.3 0.37 7.9E-06 47.5 8.3 56 329-385 194-250 (279)
158 cd04885 ACT_ThrD-I Tandem C-te 93.3 0.51 1.1E-05 35.8 7.5 32 254-286 1-32 (68)
159 cd04885 ACT_ThrD-I Tandem C-te 93.3 0.53 1.2E-05 35.7 7.5 60 120-186 2-61 (68)
160 PRK10872 relA (p)ppGpp synthet 93.2 0.55 1.2E-05 52.3 10.4 64 251-320 666-731 (743)
161 PRK10872 relA (p)ppGpp synthet 93.2 0.5 1.1E-05 52.5 10.0 65 115-186 665-731 (743)
162 cd04880 ACT_AAAH-PDT-like ACT 93.0 1.1 2.4E-05 34.5 9.1 64 119-186 2-66 (75)
163 cd04929 ACT_TPH ACT domain of 93.0 0.51 1.1E-05 36.8 7.1 50 332-382 3-53 (74)
164 PRK11092 bifunctional (p)ppGpp 92.3 0.74 1.6E-05 51.2 9.9 65 115-186 625-690 (702)
165 COG1707 ACT domain-containing 92.2 0.48 1E-05 42.5 6.7 45 29-73 4-50 (218)
166 PRK11092 bifunctional (p)ppGpp 92.1 1 2.2E-05 50.1 10.6 65 250-320 625-690 (702)
167 COG2150 Predicted regulator of 91.9 0.18 4E-06 44.9 3.8 60 2-61 68-129 (167)
168 PRK10622 pheA bifunctional cho 91.9 0.61 1.3E-05 48.1 8.2 56 329-385 297-353 (386)
169 PRK06291 aspartate kinase; Pro 91.8 7.9 0.00017 41.0 16.7 102 249-361 319-433 (465)
170 PRK11790 D-3-phosphoglycerate 91.6 0.38 8.3E-06 50.0 6.3 60 329-392 338-397 (409)
171 cd04931 ACT_PAH ACT domain of 91.5 2.2 4.8E-05 34.6 9.4 70 115-189 13-83 (90)
172 TIGR00691 spoT_relA (p)ppGpp s 91.5 1 2.2E-05 50.0 9.9 65 115-186 609-674 (683)
173 PRK09034 aspartate kinase; Rev 91.4 7.2 0.00016 41.2 15.7 110 27-151 308-423 (454)
174 TIGR00691 spoT_relA (p)ppGpp s 91.3 1.5 3.1E-05 48.8 10.8 64 250-319 609-673 (683)
175 COG0077 PheA Prephenate dehydr 91.2 0.82 1.8E-05 44.9 7.8 55 329-384 194-249 (279)
176 PF13840 ACT_7: ACT domain ; P 90.9 0.95 2.1E-05 34.2 6.4 46 114-164 4-53 (65)
177 PRK08210 aspartate kinase I; R 90.8 3.4 7.4E-05 42.8 12.5 97 249-359 269-372 (403)
178 COG0527 LysC Aspartokinases [A 90.6 15 0.00033 38.7 17.1 108 25-148 305-418 (447)
179 PRK09034 aspartate kinase; Rev 90.6 13 0.00028 39.3 16.7 108 249-364 306-423 (454)
180 TIGR00719 sda_beta L-serine de 90.4 1.7 3.7E-05 40.8 9.0 47 27-73 148-196 (208)
181 cd04930 ACT_TH ACT domain of t 90.4 0.72 1.6E-05 39.2 5.8 53 329-382 41-94 (115)
182 PRK09436 thrA bifunctional asp 90.3 13 0.00027 42.4 17.3 113 26-149 314-432 (819)
183 COG0317 SpoT Guanosine polypho 90.0 1.5 3.3E-05 48.2 9.3 66 249-320 625-691 (701)
184 COG1707 ACT domain-containing 89.9 1.3 2.9E-05 39.8 7.2 47 118-164 4-52 (218)
185 PRK06382 threonine dehydratase 89.5 2.1 4.5E-05 44.5 9.6 68 112-186 326-398 (406)
186 PLN02551 aspartokinase 89.2 21 0.00046 38.4 17.1 113 26-151 365-482 (521)
187 PRK11790 D-3-phosphoglycerate 89.0 0.81 1.8E-05 47.6 6.1 48 26-73 337-384 (409)
188 COG0317 SpoT Guanosine polypho 89.0 1.9 4.1E-05 47.6 9.1 67 113-186 624-691 (701)
189 cd04904 ACT_AAAH ACT domain of 88.9 3 6.4E-05 32.3 7.9 46 119-164 3-49 (74)
190 PRK09436 thrA bifunctional asp 88.9 15 0.00033 41.8 16.6 102 249-361 313-431 (819)
191 PRK06349 homoserine dehydrogen 88.6 1.8 3.8E-05 45.4 8.3 65 329-397 348-412 (426)
192 PRK08818 prephenate dehydrogen 88.5 0.99 2.1E-05 46.3 6.2 49 329-378 295-344 (370)
193 PRK06545 prephenate dehydrogen 88.4 3.1 6.8E-05 42.4 9.9 49 329-377 290-338 (359)
194 TIGR00657 asp_kinases aspartat 88.1 8.4 0.00018 40.4 13.1 108 26-148 301-413 (441)
195 cd04906 ACT_ThrD-I_1 First of 87.9 4 8.6E-05 32.4 8.2 30 253-284 3-32 (85)
196 PF13840 ACT_7: ACT domain ; P 87.7 2.3 5E-05 32.1 6.3 34 250-283 5-42 (65)
197 cd04906 ACT_ThrD-I_1 First of 87.4 4.5 9.8E-05 32.1 8.3 60 118-186 3-64 (85)
198 PRK06545 prephenate dehydrogen 87.3 2.2 4.8E-05 43.5 8.0 52 113-164 287-338 (359)
199 PRK11899 prephenate dehydratas 87.0 4.1 8.9E-05 40.2 9.4 49 116-164 194-243 (279)
200 COG0440 IlvH Acetolactate synt 87.0 1.8 3.9E-05 39.0 6.2 70 330-405 5-75 (163)
201 COG0440 IlvH Acetolactate synt 86.9 2.4 5.2E-05 38.2 6.9 68 116-189 4-71 (163)
202 TIGR00657 asp_kinases aspartat 86.8 17 0.00036 38.2 14.5 102 249-361 300-413 (441)
203 PRK14630 hypothetical protein; 86.7 6.2 0.00013 34.9 9.4 87 260-352 6-95 (143)
204 KOG2663 Acetolactate synthase, 86.0 1.6 3.6E-05 41.7 5.7 38 114-151 75-112 (309)
205 PRK09181 aspartate kinase; Val 85.9 14 0.0003 39.3 13.3 102 249-361 327-436 (475)
206 PRK09181 aspartate kinase; Val 85.9 9.9 0.00021 40.4 12.2 105 26-149 328-437 (475)
207 cd04929 ACT_TPH ACT domain of 85.6 7.7 0.00017 30.1 8.5 46 119-164 3-49 (74)
208 PRK13581 D-3-phosphoglycerate 85.4 2.1 4.5E-05 46.1 6.9 61 329-393 452-514 (526)
209 PRK14646 hypothetical protein; 85.1 11 0.00023 33.9 10.3 90 263-356 8-102 (155)
210 PRK14636 hypothetical protein; 84.9 8.5 0.00018 35.3 9.7 78 261-340 4-86 (176)
211 COG2150 Predicted regulator of 84.7 2.2 4.7E-05 38.2 5.5 58 331-391 95-155 (167)
212 PRK12483 threonine dehydratase 84.6 36 0.00079 36.7 15.8 136 249-397 343-502 (521)
213 PRK14634 hypothetical protein; 84.5 12 0.00025 33.6 10.2 89 262-354 7-100 (155)
214 PRK06382 threonine dehydratase 84.4 6.5 0.00014 40.8 9.9 66 26-97 329-399 (406)
215 PRK08818 prephenate dehydrogen 84.4 2.4 5.3E-05 43.5 6.5 49 115-164 294-343 (370)
216 PRK08198 threonine dehydratase 83.8 8.4 0.00018 39.9 10.4 68 112-186 323-395 (404)
217 PLN02317 arogenate dehydratase 83.7 4.4 9.6E-05 41.7 8.0 55 329-384 283-352 (382)
218 TIGR01127 ilvA_1Cterm threonin 83.1 8.7 0.00019 39.4 10.2 67 113-186 302-373 (380)
219 TIGR01127 ilvA_1Cterm threonin 82.9 7.5 0.00016 39.9 9.5 35 250-284 304-338 (380)
220 PLN02551 aspartokinase 82.6 54 0.0012 35.3 16.1 103 249-361 364-479 (521)
221 KOG2663 Acetolactate synthase, 82.4 2.6 5.6E-05 40.4 5.3 64 251-321 77-142 (309)
222 PRK14645 hypothetical protein; 82.2 15 0.00033 32.8 10.0 90 261-354 8-102 (154)
223 PRK06349 homoserine dehydrogen 82.0 6.5 0.00014 41.2 8.8 52 113-164 345-396 (426)
224 TIGR01327 PGDH D-3-phosphoglyc 81.9 2.5 5.5E-05 45.5 5.8 61 329-393 451-513 (525)
225 cd04930 ACT_TH ACT domain of t 81.9 8.2 0.00018 32.8 7.8 49 116-164 41-90 (115)
226 PRK09224 threonine dehydratase 81.4 59 0.0013 34.9 15.9 108 249-363 326-456 (504)
227 COG0077 PheA Prephenate dehydr 81.3 8 0.00017 38.0 8.5 50 115-164 193-243 (279)
228 PRK09084 aspartate kinase III; 81.0 23 0.0005 37.3 12.5 103 26-142 305-413 (448)
229 PRK08198 threonine dehydratase 80.8 13 0.00028 38.5 10.4 37 249-285 325-361 (404)
230 cd04932 ACT_AKiii-LysC-EC_1 AC 80.2 14 0.00029 28.8 8.0 31 331-361 3-36 (75)
231 PLN02550 threonine dehydratase 79.9 48 0.001 36.3 14.7 134 250-397 416-572 (591)
232 COG0527 LysC Aspartokinases [A 79.5 46 0.001 35.1 14.0 112 249-375 305-428 (447)
233 cd04935 ACT_AKiii-DAPDC_1 ACT 79.4 10 0.00022 29.5 7.0 57 336-397 11-67 (75)
234 PRK14647 hypothetical protein; 77.3 28 0.0006 31.3 10.1 85 264-354 10-99 (159)
235 PRK14640 hypothetical protein; 76.9 28 0.00061 31.0 10.0 88 264-357 8-100 (152)
236 PRK14637 hypothetical protein; 76.8 28 0.00061 31.0 9.9 76 261-340 7-86 (151)
237 cd04913 ACT_AKii-LysC-BS-like_ 76.4 20 0.00043 26.5 7.9 27 123-149 9-35 (75)
238 PRK09224 threonine dehydratase 76.3 36 0.00078 36.5 12.4 117 26-150 327-456 (504)
239 PRK13581 D-3-phosphoglycerate 75.8 6.2 0.00013 42.5 6.5 59 28-91 453-513 (526)
240 PRK00092 ribosome maturation p 75.6 32 0.00069 30.6 10.1 73 264-340 9-86 (154)
241 cd04922 ACT_AKi-HSDH-ThrA_2 AC 75.4 18 0.00038 26.4 7.2 59 29-94 3-64 (66)
242 PRK14639 hypothetical protein; 75.3 27 0.00058 30.7 9.3 84 268-357 3-91 (140)
243 cd04937 ACT_AKi-DapG-BS_2 ACT 75.3 30 0.00066 25.5 8.5 28 118-145 3-33 (64)
244 cd04937 ACT_AKi-DapG-BS_2 ACT 74.6 16 0.00035 27.0 6.8 28 29-56 3-33 (64)
245 TIGR01327 PGDH D-3-phosphoglyc 74.2 5.7 0.00012 42.8 5.7 59 28-91 452-512 (525)
246 PRK10622 pheA bifunctional cho 74.1 19 0.00042 37.2 9.3 50 115-164 296-346 (386)
247 cd04922 ACT_AKi-HSDH-ThrA_2 AC 74.0 31 0.00068 25.0 8.8 32 118-149 3-37 (66)
248 PRK14631 hypothetical protein; 73.9 42 0.0009 30.7 10.4 88 264-355 10-118 (174)
249 PRK14633 hypothetical protein; 73.9 39 0.00086 30.0 10.1 86 264-355 6-95 (150)
250 PRK11898 prephenate dehydratas 73.7 12 0.00026 36.9 7.4 52 330-382 197-250 (283)
251 PRK09084 aspartate kinase III; 73.3 37 0.0008 35.8 11.4 100 248-355 303-413 (448)
252 PRK09466 metL bifunctional asp 73.0 1.8E+02 0.0039 33.3 17.6 104 26-147 316-425 (810)
253 cd04919 ACT_AK-Hom3_2 ACT doma 72.7 24 0.00052 25.8 7.3 45 29-75 3-50 (66)
254 PRK14638 hypothetical protein; 72.6 42 0.00092 29.8 10.0 86 264-354 10-100 (150)
255 PRK08961 bifunctional aspartat 72.4 46 0.00099 38.2 12.7 103 26-144 321-429 (861)
256 PRK14643 hypothetical protein; 71.2 49 0.0011 30.0 10.1 88 264-356 11-106 (164)
257 cd04919 ACT_AK-Hom3_2 ACT doma 71.1 38 0.00082 24.7 8.8 34 118-151 3-39 (66)
258 PRK10820 DNA-binding transcrip 70.7 12 0.00027 40.1 7.3 36 331-366 2-37 (520)
259 PRK08526 threonine dehydratase 70.2 77 0.0017 32.9 12.8 68 112-186 322-394 (403)
260 TIGR01270 Trp_5_monoox tryptop 69.4 8.3 0.00018 40.5 5.3 53 329-382 31-85 (464)
261 cd04890 ACT_AK-like_1 ACT doma 69.2 36 0.00077 24.7 7.5 37 337-377 11-47 (62)
262 PRK14632 hypothetical protein; 68.5 51 0.0011 30.0 9.8 85 264-354 10-98 (172)
263 COG3978 Acetolactate synthase 68.2 25 0.00054 27.8 6.4 47 329-375 3-51 (86)
264 PF05088 Bac_GDH: Bacterial NA 67.4 51 0.0011 40.0 11.9 86 10-95 470-562 (1528)
265 cd04892 ACT_AK-like_2 ACT doma 67.2 29 0.00062 24.6 6.6 32 29-60 2-36 (65)
266 PF05088 Bac_GDH: Bacterial NA 66.3 3.2E+02 0.0069 33.6 22.3 179 14-193 328-570 (1528)
267 cd04868 ACT_AK-like ACT domain 66.2 15 0.00031 25.6 4.8 32 331-362 2-36 (60)
268 PRK08961 bifunctional aspartat 65.6 62 0.0014 37.1 11.9 103 249-357 320-429 (861)
269 cd04913 ACT_AKii-LysC-BS-like_ 65.3 17 0.00036 26.9 5.2 27 336-362 9-35 (75)
270 COG3283 TyrR Transcriptional r 65.2 16 0.00035 37.4 6.2 59 331-397 2-60 (511)
271 PLN02550 threonine dehydratase 64.9 85 0.0018 34.4 12.2 113 28-148 418-543 (591)
272 cd04891 ACT_AK-LysC-DapG-like_ 64.8 10 0.00022 26.8 3.7 27 336-362 8-34 (61)
273 PRK12483 threonine dehydratase 64.8 2.1E+02 0.0045 30.9 20.2 121 112-274 341-463 (521)
274 cd04912 ACT_AKiii-LysC-EC-like 64.2 48 0.001 25.4 7.6 30 253-282 3-35 (75)
275 cd04924 ACT_AK-Arch_2 ACT doma 64.0 44 0.00096 24.1 7.2 45 29-75 3-50 (66)
276 cd04891 ACT_AK-LysC-DapG-like_ 63.9 25 0.00053 24.7 5.6 41 34-74 8-49 (61)
277 COG4492 PheB ACT domain-contai 63.9 27 0.00058 30.4 6.4 47 27-73 72-119 (150)
278 TIGR01124 ilvA_2Cterm threonin 63.5 2E+02 0.0043 30.9 14.5 106 249-362 323-451 (499)
279 PTZ00324 glutamate dehydrogena 62.8 60 0.0013 37.6 10.8 76 4-79 203-286 (1002)
280 COG0779 Uncharacterized protei 62.6 78 0.0017 28.3 9.5 75 263-341 9-88 (153)
281 cd04924 ACT_AK-Arch_2 ACT doma 61.9 58 0.0012 23.5 8.5 34 118-151 3-39 (66)
282 cd04916 ACT_AKiii-YclM-BS_2 AC 61.6 50 0.0011 23.9 7.1 32 29-60 3-37 (66)
283 TIGR01268 Phe4hydrox_tetr phen 61.5 25 0.00054 36.8 7.0 52 330-382 17-69 (436)
284 TIGR02079 THD1 threonine dehyd 61.3 1.4E+02 0.003 31.1 12.7 67 113-186 322-390 (409)
285 cd04932 ACT_AKiii-LysC-EC_1 AC 60.9 75 0.0016 24.5 8.7 44 117-164 2-48 (75)
286 PRK08526 threonine dehydratase 60.6 1.3E+02 0.0028 31.3 12.2 67 326-397 323-394 (403)
287 PRK09466 metL bifunctional asp 60.6 1.3E+02 0.0029 34.3 13.1 101 249-360 315-425 (810)
288 cd04912 ACT_AKiii-LysC-EC-like 60.2 75 0.0016 24.2 8.6 63 117-186 2-67 (75)
289 cd04918 ACT_AK1-AT_2 ACT domai 59.6 55 0.0012 24.2 7.0 34 29-62 3-38 (65)
290 COG2061 ACT-domain-containing 59.5 90 0.0019 27.9 9.0 32 251-282 5-36 (170)
291 cd04933 ACT_AK1-AT_1 ACT domai 59.1 44 0.00096 26.2 6.6 58 336-397 11-70 (78)
292 cd04868 ACT_AK-like ACT domain 58.6 18 0.00039 25.1 4.0 32 118-149 2-36 (60)
293 COG3978 Acetolactate synthase 58.4 74 0.0016 25.2 7.4 65 116-189 3-69 (86)
294 PF02576 DUF150: Uncharacteris 58.0 49 0.0011 28.9 7.4 66 268-337 2-70 (141)
295 COG4492 PheB ACT domain-contai 57.2 65 0.0014 28.1 7.6 49 250-298 71-120 (150)
296 PRK08841 aspartate kinase; Val 57.0 2.4E+02 0.0053 29.2 14.1 113 39-190 266-378 (392)
297 PLN02828 formyltetrahydrofolat 56.9 1.4E+02 0.0031 29.2 11.1 103 44-152 1-106 (268)
298 cd04936 ACT_AKii-LysC-BS-like_ 56.8 67 0.0014 22.8 7.0 30 30-59 3-35 (63)
299 PRK14644 hypothetical protein; 53.6 1.1E+02 0.0024 26.7 8.9 64 270-340 6-74 (136)
300 cd04934 ACT_AK-Hom3_1 CT domai 53.5 58 0.0013 25.1 6.3 54 337-397 12-65 (73)
301 cd04916 ACT_AKiii-YclM-BS_2 AC 52.9 84 0.0018 22.6 8.7 34 118-151 3-39 (66)
302 cd04921 ACT_AKi-HSDH-ThrA-like 52.6 85 0.0019 23.8 7.3 61 29-96 3-66 (80)
303 PRK08639 threonine dehydratase 52.2 89 0.0019 32.6 9.5 69 112-186 332-401 (420)
304 cd04890 ACT_AK-like_1 ACT doma 51.4 90 0.0019 22.5 7.2 37 124-164 11-47 (62)
305 PRK11898 prephenate dehydratas 51.1 98 0.0021 30.5 9.1 49 116-164 196-246 (283)
306 PRK14635 hypothetical protein; 50.9 1.1E+02 0.0024 27.5 8.7 93 260-357 4-102 (162)
307 cd04935 ACT_AKiii-DAPDC_1 ACT 50.9 1.1E+02 0.0024 23.5 7.6 56 124-186 12-67 (75)
308 TIGR02079 THD1 threonine dehyd 50.7 1E+02 0.0022 32.0 9.6 37 249-285 323-359 (409)
309 PRK08841 aspartate kinase; Val 49.6 79 0.0017 32.8 8.5 95 249-361 256-350 (392)
310 PRK14641 hypothetical protein; 49.2 1.5E+02 0.0033 27.0 9.3 76 273-354 20-104 (173)
311 cd04892 ACT_AK-like_2 ACT doma 49.0 91 0.002 21.8 8.2 32 118-149 2-36 (65)
312 PLN02317 arogenate dehydratase 47.9 1.3E+02 0.0028 31.1 9.6 49 116-164 283-346 (382)
313 TIGR01124 ilvA_2Cterm threonin 47.2 3E+02 0.0066 29.5 12.7 66 113-186 322-387 (499)
314 cd04920 ACT_AKiii-DAPDC_2 ACT 45.1 1.2E+02 0.0027 22.2 7.7 27 118-144 2-31 (63)
315 PRK08639 threonine dehydratase 44.6 1.4E+02 0.0031 31.0 9.6 38 248-285 333-370 (420)
316 TIGR01268 Phe4hydrox_tetr phen 44.1 1.4E+02 0.0029 31.5 9.1 66 116-186 16-82 (436)
317 cd04920 ACT_AKiii-DAPDC_2 ACT 42.9 1.1E+02 0.0024 22.5 6.3 28 29-56 2-32 (63)
318 cd04936 ACT_AKii-LysC-BS-like_ 42.5 1.2E+02 0.0026 21.4 7.9 31 118-148 2-35 (63)
319 cd04914 ACT_AKi-DapG-BS_1 ACT 41.9 44 0.00095 25.1 3.9 30 118-147 3-33 (67)
320 cd04923 ACT_AK-LysC-DapG-like_ 41.6 1.2E+02 0.0027 21.3 7.9 31 118-148 2-35 (63)
321 cd04914 ACT_AKi-DapG-BS_1 ACT 41.6 45 0.00098 25.0 4.0 43 29-75 3-46 (67)
322 cd04915 ACT_AK-Ectoine_2 ACT d 41.3 81 0.0018 23.5 5.4 31 29-59 4-36 (66)
323 cd04923 ACT_AK-LysC-DapG-like_ 39.8 68 0.0015 22.7 4.7 31 331-361 2-35 (63)
324 PF04083 Abhydro_lipase: Parti 39.8 82 0.0018 23.6 5.1 32 45-76 2-33 (63)
325 cd04921 ACT_AKi-HSDH-ThrA-like 38.3 1.7E+02 0.0038 22.0 8.8 34 117-150 2-38 (80)
326 TIGR01270 Trp_5_monoox tryptop 38.0 1.4E+02 0.0031 31.5 8.2 51 114-164 29-81 (464)
327 PRK14646 hypothetical protein; 36.7 3.1E+02 0.0067 24.5 9.4 73 342-416 9-86 (155)
328 PRK14634 hypothetical protein; 36.3 3E+02 0.0064 24.6 9.0 74 342-417 9-87 (155)
329 cd04934 ACT_AK-Hom3_1 CT domai 35.7 2E+02 0.0043 22.0 6.8 54 124-186 12-65 (73)
330 PTZ00324 glutamate dehydrogena 33.1 2.5E+02 0.0054 32.8 9.7 78 239-316 216-299 (1002)
331 PF01709 Transcrip_reg: Transc 32.6 1.3E+02 0.0029 28.7 6.6 101 27-150 92-196 (234)
332 PRK10820 DNA-binding transcrip 32.3 52 0.0011 35.4 4.1 35 118-152 2-36 (520)
333 PRK02001 hypothetical protein; 32.3 3.1E+02 0.0067 24.5 8.4 65 269-340 12-78 (152)
334 cd04918 ACT_AK1-AT_2 ACT domai 32.0 2.1E+02 0.0045 21.0 8.6 35 253-287 3-39 (65)
335 cd04933 ACT_AK1-AT_1 ACT domai 31.4 51 0.0011 25.9 2.9 37 124-164 12-48 (78)
336 COG3603 Uncharacterized conser 31.1 2.5E+02 0.0054 24.1 7.0 38 111-148 58-98 (128)
337 cd07247 SgaA_N_like N-terminal 29.9 2.1E+02 0.0046 22.7 6.6 51 25-81 60-110 (114)
338 PRK00907 hypothetical protein; 29.6 2.1E+02 0.0045 23.3 6.2 65 28-98 18-86 (92)
339 PRK14630 hypothetical protein; 28.6 3.9E+02 0.0084 23.5 8.3 42 36-78 6-48 (143)
340 PRK12331 oxaloacetate decarbox 26.7 7.8E+02 0.017 26.0 12.0 85 261-368 152-236 (448)
341 cd07247 SgaA_N_like N-terminal 26.5 2.3E+02 0.005 22.5 6.3 50 250-305 61-110 (114)
342 PRK14645 hypothetical protein; 26.2 4.7E+02 0.01 23.3 9.3 74 342-417 11-89 (154)
343 PRK00907 hypothetical protein; 25.8 3.3E+02 0.0071 22.2 6.7 63 116-185 17-83 (92)
344 cd07261 Glo_EDI_BRP_like_11 Th 24.8 1.6E+02 0.0034 23.6 5.0 52 26-81 59-110 (114)
345 PF04083 Abhydro_lipase: Parti 24.5 2.2E+02 0.0048 21.3 5.2 33 269-301 2-34 (63)
346 PRK14040 oxaloacetate decarbox 24.1 9.4E+02 0.02 26.4 12.0 87 260-369 152-238 (593)
347 PRK00092 ribosome maturation p 24.0 5E+02 0.011 22.9 9.4 90 40-142 9-99 (154)
348 PF02576 DUF150: Uncharacteris 23.7 4.2E+02 0.0091 22.9 7.7 54 346-402 2-55 (141)
349 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.7 6.3E+02 0.014 24.5 9.8 85 261-368 147-231 (275)
350 PRK14636 hypothetical protein; 23.1 5.8E+02 0.013 23.3 9.2 74 342-417 7-85 (176)
351 PRK05925 aspartate kinase; Pro 22.8 9E+02 0.02 25.4 16.5 101 28-146 301-404 (440)
352 COG2061 ACT-domain-containing 22.3 97 0.0021 27.8 3.2 124 27-164 5-138 (170)
353 PF01709 Transcrip_reg: Transc 21.7 3.6E+02 0.0079 25.8 7.4 111 240-363 79-196 (234)
354 cd07943 DRE_TIM_HOA 4-hydroxy- 21.0 7.4E+02 0.016 23.7 11.3 89 258-368 136-224 (263)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.4e-27 Score=263.54 Aligned_cols=161 Identities=24% Similarity=0.391 Sum_probs=145.4
Q ss_pred CCCCEEEEEc-CCCCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEccCCCCCCCHHHHHHH
Q 013535 237 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERV 314 (441)
Q Consensus 237 ~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~~~~~d~F~V~~~~g~~i~~~~~~~~l 314 (441)
..+|.|.+++ .+.++++|+|+++||||||++|+++|+.+|+||++|+|.| .+|+++|+|+|++.+|.++. ++++++|
T Consensus 662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~l 740 (854)
T PRK01759 662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQL 740 (854)
T ss_pred CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHHH
Confidence 3578899999 8899999999999999999999999999999999999998 58999999999999999885 4688999
Q ss_pred HHHHHHHHhh---------hc-------------------CCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC
Q 013535 315 IQCLEAAIER---------RA-------------------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 366 (441)
Q Consensus 315 ~~~L~~~L~~---------r~-------------------~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g 366 (441)
++.|.++|.. +. ...|+|||.|.|||||||+|+++|.++|++|++|||+|+|
T Consensus 741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g 820 (854)
T PRK01759 741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG 820 (854)
T ss_pred HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence 9999888731 00 0148999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEcCCCCCCChHHHHHHHHHhccc
Q 013535 367 GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHT 398 (441)
Q Consensus 367 ~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~ 398 (441)
++|+|+|||+|.+|.|++++.+++|+++|.++
T Consensus 821 erv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~ 852 (854)
T PRK01759 821 EKAEDFFILTNQQGQALDEEERKALKSRLLSN 852 (854)
T ss_pred ceEEEEEEEECCCCCcCChHHHHHHHHHHHHH
Confidence 99999999999999999876669999998874
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=3.5e-27 Score=263.08 Aligned_cols=161 Identities=24% Similarity=0.396 Sum_probs=146.7
Q ss_pred CCCEEEEEc-CCCCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEccCCCCCCCHHHHHHHH
Q 013535 238 SRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVI 315 (441)
Q Consensus 238 ~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~F~V~~~~g~~i~~~~~~~~l~ 315 (441)
.+|.|.+++ .+.++++|+|+++||||||++|+++|+.+|+||++|+|+|. +|+++|+|+|++.+|.++. ++++++|+
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~ 765 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR 765 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence 578899999 88899999999999999999999999999999999999998 5699999999999999885 46889999
Q ss_pred HHHHHHHhhh---------c--------------------CCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC
Q 013535 316 QCLEAAIERR---------A--------------------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 366 (441)
Q Consensus 316 ~~L~~~L~~r---------~--------------------~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g 366 (441)
+.|.++|..+ . +..|+|||.|.|||||||+|+++|.++|++|++|||+|+|
T Consensus 766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g 845 (884)
T PRK05007 766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG 845 (884)
T ss_pred HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence 9999887321 0 1147999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEcCCCCCCChHHHHHHHHHhcccc
Q 013535 367 GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTK 399 (441)
Q Consensus 367 ~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~ 399 (441)
++|+|+|||++.+|.|++++.+++|+++|..++
T Consensus 846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 846 ERVEDLFILATADRRALNEELQQELRQRLTEAL 878 (884)
T ss_pred ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999888899999998855
No 3
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=9.4e-27 Score=258.80 Aligned_cols=177 Identities=24% Similarity=0.337 Sum_probs=151.2
Q ss_pred hcCCCEEEEeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCch---HH
Q 013535 11 RMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK---EV 86 (441)
Q Consensus 11 ~~~~~~V~v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~---~~ 86 (441)
...+|.|.+++.++.++++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|.++.++ .+
T Consensus 661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l 740 (854)
T PRK01759 661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQL 740 (854)
T ss_pred cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHH
Confidence 3456889999999999999999999999999999999999999999999998 8999999999999999887542 24
Q ss_pred HHHHHHHhcccCCCCC-------------CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC
Q 013535 87 IDYIQQRLETDASFAP-------------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153 (441)
Q Consensus 87 ~~~L~~~L~~~~~~~~-------------~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~ 153 (441)
.+.|+++|.+...... ++.+.++++.+..+|+|+|.++||||||++|+++|.++|++|++|+|.|.|
T Consensus 741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g 820 (854)
T PRK01759 741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG 820 (854)
T ss_pred HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence 4666666665432110 122334457888999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535 154 DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (441)
Q Consensus 154 ~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (441)
++++|+|||++ ..|.++.++++ ++|+++|.++|.
T Consensus 821 erv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l~ 854 (854)
T PRK01759 821 EKAEDFFILTN-QQGQALDEEER-KALKSRLLSNLS 854 (854)
T ss_pred ceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhC
Confidence 99999999999 68999987666 999999988763
No 4
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=7.2e-26 Score=252.57 Aligned_cols=176 Identities=22% Similarity=0.313 Sum_probs=152.0
Q ss_pred CCCEEEEeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCch---HHHH
Q 013535 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK---EVID 88 (441)
Q Consensus 13 ~~~~V~v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~---~~~~ 88 (441)
.+|.|.+++.++.++++|+|+++|+||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+.+|.+++++ ++.+
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~ 766 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRK 766 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999997 6789999999999999887542 2456
Q ss_pred HHHHHhcccCCCC------C--------CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCC
Q 013535 89 YIQQRLETDASFA------P--------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 154 (441)
Q Consensus 89 ~L~~~L~~~~~~~------~--------~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~ 154 (441)
.|+++|.+..... + ++.+.++++.+..+|+|+|.+.||||||++|+++|.++|++|++|+|.|.|+
T Consensus 767 ~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~ge 846 (884)
T PRK05007 767 ALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGE 846 (884)
T ss_pred HHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCc
Confidence 6667776542111 0 1223344578899999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013535 155 RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (441)
Q Consensus 155 ~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (441)
+++|+|||++ ..|.+++ +++.+.|+++|.++|..
T Consensus 847 ra~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 847 RVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred eEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 9999999999 5889996 77889999999999865
No 5
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=3e-25 Score=247.59 Aligned_cols=179 Identities=22% Similarity=0.383 Sum_probs=151.1
Q ss_pred CCCEEEEeeCCC---CCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCc-hH--
Q 013535 13 NPPRVVIDNNTC---ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRD-KE-- 85 (441)
Q Consensus 13 ~~~~V~v~~~~~---~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~-~~-- 85 (441)
+.|.|.++..+. .++++|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|.+++|.++.. ++
T Consensus 687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~ 766 (895)
T PRK00275 687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI 766 (895)
T ss_pred CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence 467888888776 58999999999999999999999999999999999986 789999999999999887532 22
Q ss_pred --HHHHHHHHhcccCCCC-------------C--CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEE
Q 013535 86 --VIDYIQQRLETDASFA-------------P--SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAE 148 (441)
Q Consensus 86 --~~~~L~~~L~~~~~~~-------------~--~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~ 148 (441)
+.+.|.++|.+..... . ++.+.+.++++.+.|+|+|+++||||||++|+++|+.+|+||++|+
T Consensus 767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak 846 (895)
T PRK00275 767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK 846 (895)
T ss_pred HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence 4456666666543211 0 1122234477789999999999999999999999999999999999
Q ss_pred EEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 013535 149 IWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 192 (441)
Q Consensus 149 i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 192 (441)
|.|.++++.|+|||++ .+|.++.+++++++|+++|.++|.+..
T Consensus 847 I~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~~ 889 (895)
T PRK00275 847 IATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDARN 889 (895)
T ss_pred EEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999 588999888899999999999997654
No 6
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.93 E-value=8.1e-25 Score=244.18 Aligned_cols=182 Identities=25% Similarity=0.340 Sum_probs=156.7
Q ss_pred CCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEeCCCCCCCC-CHHHHHHHHHHHHHhhcCC
Q 013535 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIK-DPKRLSTIKELLFNVLRGY 191 (441)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~~~~g~~~~-~~~~~~~l~~~L~~~L~~~ 191 (441)
.+.++|.|+++||||||++||++|+.+|+||++|+|+|. +|.+.|+|+|.+ .+|.++. +++++++|++.|.++|.|+
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 489999999999999999999999999999999999875 788999999999 5788754 4689999999999999987
Q ss_pred CcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEecCCcchHHHHHH
Q 013535 192 DDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVC 270 (441)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i~~ 270 (441)
.+.. . .+.+|.... . ..+..+|.|.+++ .+.++|+|+|+++||||||++|++
T Consensus 781 ~~~~---~--------~~~~~~~~~------~----------~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~ 833 (895)
T PRK00275 781 DDYP---T--------IIQRRVPRQ------L----------KHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGR 833 (895)
T ss_pred Cccc---h--------hhhhhhhhh------c----------cCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHH
Confidence 5311 1 111221100 0 1235679999999 888999999999999999999999
Q ss_pred HHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh
Q 013535 271 TLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 323 (441)
Q Consensus 271 ~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~ 323 (441)
+|+.+|+||++|+|.|.+++++|+|||++.+|.++.++.++++|+++|.++|.
T Consensus 834 ~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~ 886 (895)
T PRK00275 834 IFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLD 886 (895)
T ss_pred HHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999888899999999998874
No 7
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=9.5e-25 Score=242.24 Aligned_cols=175 Identities=24% Similarity=0.317 Sum_probs=146.5
Q ss_pred CCCEEEEee-CCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCch-HHHHH
Q 013535 13 NPPRVVIDN-NTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK-EVIDY 89 (441)
Q Consensus 13 ~~~~V~v~~-~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~-~~~~~ 89 (441)
+.|.|.+.. .+..++++|+|+++|+||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|.+...+ ++.+.
T Consensus 675 ~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~ 754 (869)
T PRK04374 675 GQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAA 754 (869)
T ss_pred CCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHH
Confidence 467777765 67778999999999999999999999999999999999997 8899999999999887643222 35677
Q ss_pred HHHHhcccCCCC-------C--------CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCC
Q 013535 90 IQQRLETDASFA-------P--------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 154 (441)
Q Consensus 90 L~~~L~~~~~~~-------~--------~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~ 154 (441)
|+++|.+..... + ++.+.+.++.+.+.|+|+|.+.||||||++||++|+++|+||++|+|+|.++
T Consensus 755 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~ 834 (869)
T PRK04374 755 LRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGE 834 (869)
T ss_pred HHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCC
Confidence 788887743210 0 1112233467789999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535 155 RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (441)
Q Consensus 155 ~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (441)
++.|+|||++ .+|.++.++++ +.|+++|.++|.
T Consensus 835 ~a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 835 RAEDQFQITD-EHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred EEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence 9999999999 58888876666 999999998885
No 8
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=2.1e-24 Score=239.96 Aligned_cols=173 Identities=18% Similarity=0.295 Sum_probs=143.6
Q ss_pred cCCCEEEEeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCch----HH
Q 013535 12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK----EV 86 (441)
Q Consensus 12 ~~~~~V~v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~----~~ 86 (441)
.+.|.|.+...+..+.++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|. ..++ ++
T Consensus 663 ~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i 741 (856)
T PRK03059 663 TDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLV 741 (856)
T ss_pred CCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHH
Confidence 346888899999999999999999999999999999999999999999986 88999999999998776 3232 35
Q ss_pred HHHHHHHhcccCCCC-------C--------CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535 87 IDYIQQRLETDASFA-------P--------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (441)
Q Consensus 87 ~~~L~~~L~~~~~~~-------~--------~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T 151 (441)
.+.|+++|.+..... + ++.+.+.++++.+.|+|+|+++||||||++||++|+.+|+||++|+|+|
T Consensus 742 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T 821 (856)
T PRK03059 742 EHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT 821 (856)
T ss_pred HHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence 566677776643211 0 0111233467779999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535 152 HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (441)
Q Consensus 152 ~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (441)
.++++.|+|||++ .++.+++++++|++.|.++|.
T Consensus 822 ~~~~v~DvF~V~~----~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 822 LGERVEDTFLIDG----SGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred cCCEEEEEEEEcC----CCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999965 234578899999999988774
No 9
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.93 E-value=1.4e-24 Score=242.74 Aligned_cols=163 Identities=26% Similarity=0.347 Sum_probs=147.0
Q ss_pred CCCCEEEEEc-CCCCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEccCCCCCCCHHHHHHH
Q 013535 237 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERV 314 (441)
Q Consensus 237 ~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~~~~~d~F~V~~~~g~~i~~~~~~~~l 314 (441)
...|.|.+++ ...++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++.+|.++.+++++++|
T Consensus 653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i 732 (850)
T TIGR01693 653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQEL 732 (850)
T ss_pred CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHH
Confidence 3468899988 6689999999999999999999999999999999999995 5899999999999999999888789999
Q ss_pred HHHHHHHHhh-----------h-cC--------------------CceEEEEEeCCccchHHHHHHHHHHCCceEEEEEE
Q 013535 315 IQCLEAAIER-----------R-AS--------------------EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEI 362 (441)
Q Consensus 315 ~~~L~~~L~~-----------r-~~--------------------~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i 362 (441)
+..|.++|.. + .+ ..|+|+|.+.||||||++|+++|+++|+||++|+|
T Consensus 733 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i 812 (850)
T TIGR01693 733 LQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKI 812 (850)
T ss_pred HHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEE
Confidence 9999888731 0 00 14899999999999999999999999999999999
Q ss_pred EeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcccc
Q 013535 363 STIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTK 399 (441)
Q Consensus 363 ~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~ 399 (441)
+|+|++++|+|||++..|.|+++++++.|+++|.+++
T Consensus 813 ~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 813 TTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred EecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998888899999988754
No 10
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=3.5e-24 Score=236.12 Aligned_cols=169 Identities=20% Similarity=0.218 Sum_probs=143.6
Q ss_pred CCCEEEEeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHH
Q 013535 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (441)
Q Consensus 13 ~~~~V~v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~ 92 (441)
.+|.|.+++.. .+.++|+|+++||||||++||++|+.+||||++|+|+|.+|+++|+|+|.+++|.+...+++.+.|++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~ 664 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR 664 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence 67889999888 89999999999999999999999999999999999999999999999999988875544457788888
Q ss_pred HhcccCCC--C---C--C----------cceee--eecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC
Q 013535 93 RLETDASF--A---P--S----------LRSSV--GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153 (441)
Q Consensus 93 ~L~~~~~~--~---~--~----------~~~~v--~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~ 153 (441)
+|.+.... . . . .+..+ .++.+.+.|+|+|.++||||||++|+++|+++|+||++|+|.|.+
T Consensus 665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g 744 (774)
T PRK03381 665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG 744 (774)
T ss_pred HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 88875321 0 0 0 01122 336667899999999999999999999999999999999999999
Q ss_pred CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 013535 154 DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (441)
Q Consensus 154 ~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (441)
+++.|+|||++ .+|.++.++ .+.|+++|.
T Consensus 745 ~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 745 ADVVDVFYVTG-AAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence 99999999999 589999754 678877764
No 11
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.9e-24 Score=228.92 Aligned_cols=163 Identities=26% Similarity=0.392 Sum_probs=143.6
Q ss_pred CCCCEEEEEc-CCCCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEccCCCCCCCHHHHHHH
Q 013535 237 SSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERV 314 (441)
Q Consensus 237 ~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~F~V~~~~g~~i~~~~~~~~l 314 (441)
...|.|.+.+ ...+.++|+|+++|+|.||+.+++++...|+||++|+|+|+ +|+++|+|+|.+++|.++. +++...+
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~ 747 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL 747 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence 4678888888 77789999999999999999999999999999999999997 7899999999999999988 4577777
Q ss_pred HHHHHHHHhh---------hc----------C----------CceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee
Q 013535 315 IQCLEAAIER---------RA----------S----------EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI 365 (441)
Q Consensus 315 ~~~L~~~L~~---------r~----------~----------~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~ 365 (441)
+..|.+.+.. +. | +.++|||++.||||||++|+++|++++++|++|||+|.
T Consensus 748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~ 827 (867)
T COG2844 748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827 (867)
T ss_pred HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence 7777766531 10 1 14799999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEcCCCCCCChHHHHHHHHHhccccc
Q 013535 366 GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKL 400 (441)
Q Consensus 366 g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~~ 400 (441)
||+|+|+|||++..|.+++++..+.+.+.+.+++.
T Consensus 828 GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~ 862 (867)
T COG2844 828 GERVEDVFIVTDADGQALNAELRQSLLQRLLEALL 862 (867)
T ss_pred cccceeEEEEeccccccCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998777788787777554
No 12
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=1.1e-23 Score=233.88 Aligned_cols=180 Identities=22% Similarity=0.253 Sum_probs=152.0
Q ss_pred cCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (441)
Q Consensus 111 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (441)
.+..+.++|.|+++|+||||++||++|+.+|+||++|+|+| .+|.+.|+|+|.+ ..|.+ +++++++++.|.++|.
T Consensus 685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~-~~~~~---~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLP-QDTYA---DGDPQRLAAALRQVLA 760 (869)
T ss_pred ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeC-CCCCC---hHHHHHHHHHHHHHHc
Confidence 55668999999999999999999999999999999999998 5889999999999 45653 3568899999999999
Q ss_pred CCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEecCCcchHHHH
Q 013535 190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDI 268 (441)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i 268 (441)
|+.... .+. .++... +. ..+..+|.|.+++ .+.++|+|+|+++||||||++|
T Consensus 761 ~~~~~~----~~~-------~~~~~~---~~-------------~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~I 813 (869)
T PRK04374 761 GDLQKV----RPA-------RRAVPR---QL-------------RHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADV 813 (869)
T ss_pred CCCCcc----ccc-------cccCcc---cc-------------cCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHH
Confidence 865311 011 011100 00 1345789999999 8889999999999999999999
Q ss_pred HHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH
Q 013535 269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322 (441)
Q Consensus 269 ~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L 322 (441)
+++|+.+|+||++|+|+|.+++++|+|||++.+|.++.++++ +.|+++|.+.|
T Consensus 814 a~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l 866 (869)
T PRK04374 814 AHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRDALCACL 866 (869)
T ss_pred HHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence 999999999999999999999999999999999998877655 99999998776
No 13
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.92 E-value=2.5e-23 Score=232.60 Aligned_cols=185 Identities=26% Similarity=0.381 Sum_probs=157.2
Q ss_pred cCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEE-eeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW-THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (441)
Q Consensus 111 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~-T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (441)
....+.|+|+|+++||||||++||++|+.+|+||++|+|+ |.++++.|+|+|++ .+|.++.+++++++|++.|.++|.
T Consensus 663 ~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~~~L~ 741 (850)
T TIGR01693 663 TRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLVDVLA 741 (850)
T ss_pred cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHHHHHc
Confidence 4457999999999999999999999999999999999999 56899999999999 588888888889999999999998
Q ss_pred CCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEecCCcchHHHH
Q 013535 190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDI 268 (441)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i 268 (441)
+..... ..+. .|.. .. + +...+..+|.|.|+| .++.+|+|+|.|+|||||+++|
T Consensus 742 ~~~~~~---~~~~--------~~~~-~~---~----------~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i 796 (850)
T TIGR01693 742 GLAKDP---DTIS--------ARRA-RR---R----------RLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARV 796 (850)
T ss_pred CCCccc---cccc--------cccC-Cc---c----------cccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHH
Confidence 864211 0011 1100 00 0 001345789999999 9999999999999999999999
Q ss_pred HHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH
Q 013535 269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322 (441)
Q Consensus 269 ~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L 322 (441)
+++|+++|+||.+|+|.|.++++.|+|+|++..|.++.+ .+.+.|+++|.+.|
T Consensus 797 ~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 797 GRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred HHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987 68899999998764
No 14
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=2.4e-23 Score=234.19 Aligned_cols=179 Identities=25% Similarity=0.368 Sum_probs=151.3
Q ss_pred CCCEEEEeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchH----HH
Q 013535 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKE----VI 87 (441)
Q Consensus 13 ~~~~V~v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~----~~ 87 (441)
.++.|.+++.+..++++|+|+++|+||||++||++|+.+||||++|+|+| .+|+++|+|+|.+++|.++.+++ +.
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 45788899998889999999999999999999999999999999999997 88999999999998887765543 34
Q ss_pred HHHHHHhcccCCCC--------C---------CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEE
Q 013535 88 DYIQQRLETDASFA--------P---------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (441)
Q Consensus 88 ~~L~~~L~~~~~~~--------~---------~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~ 150 (441)
+.|++++.+...+. + ++.+.+.++++...|+|+|.++||||||++|+++|+++|+||++|+|.
T Consensus 798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~ 877 (931)
T PRK05092 798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA 877 (931)
T ss_pred HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence 45555554432110 0 011223446778899999999999999999999999999999999999
Q ss_pred eeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 013535 151 THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 192 (441)
Q Consensus 151 T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 192 (441)
|.++++.|+|+|++ .+|.++.+++++++|+++|.++|.++.
T Consensus 878 T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~~ 918 (931)
T PRK05092 878 TYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEGE 918 (931)
T ss_pred EcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999 589999888899999999999998754
No 15
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=5.5e-23 Score=231.32 Aligned_cols=189 Identities=27% Similarity=0.441 Sum_probs=160.6
Q ss_pred eecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535 109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (441)
Q Consensus 109 ~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (441)
...+..+.++|+|+++||||||++||++|+.+|+||++|+|+| .++.+.|+|+|++ .+|.++.+++++++|++.|..+
T Consensus 725 ~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~~~ 803 (931)
T PRK05092 725 RPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDA 803 (931)
T ss_pred EecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHH
Confidence 3456678999999999999999999999999999999999998 5788999999999 5788777788999999999999
Q ss_pred hcCCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEecCCcchHH
Q 013535 188 LRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLF 266 (441)
Q Consensus 188 L~~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~ 266 (441)
+.+...+. . .+.+|.... + . ...+..+|.|.++| .+.++|+|.|+++||||||+
T Consensus 804 l~~~~~~~---~--------~~~~r~~~~----~--~--------~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~ 858 (931)
T PRK05092 804 LSGEVRLP---E--------ALAKRTKPK----K--R--------ARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLY 858 (931)
T ss_pred HcCCCCCc---c--------ccccccCcc----c--c--------ccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHH
Confidence 98865311 0 111110000 0 0 01335679999999 88899999999999999999
Q ss_pred HHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh
Q 013535 267 DIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 323 (441)
Q Consensus 267 ~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~ 323 (441)
+|+++|+++|+||.+|+|.|.++++.|+|+|++.+|.++.++..++.|+++|.+.|.
T Consensus 859 ~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 859 DLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred HHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999888889999999998884
No 16
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=4.1e-23 Score=229.65 Aligned_cols=181 Identities=19% Similarity=0.279 Sum_probs=150.2
Q ss_pred ecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh
Q 013535 110 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (441)
Q Consensus 110 ~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (441)
..+..+.++|.|+++||||||++||++|+.+|+||++|+|+| .+|.+.|+|+|.+ ..|. ..+++++++|++.|.++|
T Consensus 672 ~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~-~~~~-~~~~~~~~~i~~~l~~~l 749 (856)
T PRK03059 672 LSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD-PEED-VHYRDIINLVEHELAERL 749 (856)
T ss_pred ecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC-CCCC-CChHHHHHHHHHHHHHHH
Confidence 356678999999999999999999999999999999999987 5789999999999 4555 556789999999999999
Q ss_pred cCCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEecCCcchHHH
Q 013535 189 RGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFD 267 (441)
Q Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~ 267 (441)
.|+.+.. . ...+|... + . ..+..+|.|.+++ .+.++|+|+|+++||||||++
T Consensus 750 ~~~~~~~-----~------~~~~~~~~---~---~----------~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~ 802 (856)
T PRK03059 750 AEQAPLP-----E------PSKGRLSR---Q---V----------KHFPITPRVDLRPDERGQYYILSVSANDRPGLLYA 802 (856)
T ss_pred cCCCCcc-----h------hhcccccc---c---c----------cCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHH
Confidence 9875311 0 01122100 0 0 1335678999999 888999999999999999999
Q ss_pred HHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH
Q 013535 268 IVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322 (441)
Q Consensus 268 i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L 322 (441)
|+++|+.+|+||++|+|+|.+|+++|+|||.+ .++.+++++++|+++|.+.|
T Consensus 803 Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~---~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 803 IARVLAEHRVSVHTAKINTLGERVEDTFLIDG---SGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred HHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC---CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999953 33556678999999998765
No 17
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.3e-23 Score=220.86 Aligned_cols=177 Identities=24% Similarity=0.358 Sum_probs=145.4
Q ss_pred cCCCEEEEeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchH---HH
Q 013535 12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKE---VI 87 (441)
Q Consensus 12 ~~~~~V~v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~---~~ 87 (441)
..+|.|.++.....+.++|+||++|+|.||+.+|+++...|+||++|+|+| .+|+++|+|+|++++|.++.... +.
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~ 748 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALR 748 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHH
Confidence 677999999999999999999999999999999999999999999999996 88999999999999998876432 23
Q ss_pred HHHHHHhcccCCCCC--------------CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC
Q 013535 88 DYIQQRLETDASFAP--------------SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153 (441)
Q Consensus 88 ~~L~~~L~~~~~~~~--------------~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~ 153 (441)
+.+.+++......++ ++.+.+.+..+...|+++|.+.||||||+.++++|+++|++|++|+|+|.|
T Consensus 749 ~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~G 828 (867)
T COG2844 749 GELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFG 828 (867)
T ss_pred HHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecccc
Confidence 444444433322111 111223336667899999999999999999999999999999999999999
Q ss_pred CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013535 154 DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (441)
Q Consensus 154 ~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (441)
++++|+|+|++ ..|.++. ++..+.+.+.|.+++..
T Consensus 829 ErveD~F~vt~-~~~~~l~-~~~~q~l~~~ll~al~~ 863 (867)
T COG2844 829 ERVEDVFIVTD-ADGQALN-AELRQSLLQRLLEALLP 863 (867)
T ss_pred ccceeEEEEec-cccccCC-HHHHHHHHHHHHHHhcc
Confidence 99999999999 5888884 55667777777666654
No 18
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=7.7e-23 Score=225.51 Aligned_cols=178 Identities=25% Similarity=0.280 Sum_probs=145.4
Q ss_pred ecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535 110 VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (441)
Q Consensus 110 ~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (441)
..+ .+.++|+|+++||||||++||++|+.+|+||++|+|+|.+|.+.|+|+|.+ ..|.+. .++++++.|.++|.
T Consensus 594 ~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~-~~~~~~----~~~~l~~~L~~~L~ 667 (774)
T PRK03381 594 PAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP-RFGSPP----DAALLRQDLRRALD 667 (774)
T ss_pred eCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcc----hHHHHHHHHHHHHc
Confidence 355 799999999999999999999999999999999999999999999999999 466543 25899999999999
Q ss_pred CCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEc-CCCCeEEEEEEecCCcchHHHH
Q 013535 190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLN-IEKDYTVITMRSKDRPKLLFDI 268 (441)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~-~~~~~t~I~V~~~DrpGLl~~i 268 (441)
++.+.. ..+. +|.....+ . . ...+..++.|.+++ .+.++++|+|+++||||||++|
T Consensus 668 ~~~~~~---~~~~--------~~~~~~~~--~--~--------~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~I 724 (774)
T PRK03381 668 GDLDVL---ARLA--------AREAAAAA--V--P--------VRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARL 724 (774)
T ss_pred CCCchh---hhhh--------cccccccc--c--c--------cccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHH
Confidence 854311 0111 11000000 0 0 01335678999999 8889999999999999999999
Q ss_pred HHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHH
Q 013535 269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCL 318 (441)
Q Consensus 269 ~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L 318 (441)
+++|+++|+||.+|+|.|.+++++|+|||++.+|.++.++ ++.|+++|
T Consensus 725 a~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 725 ARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAV 772 (774)
T ss_pred HHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence 9999999999999999999999999999999999998865 67777665
No 19
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.80 E-value=2.7e-19 Score=138.70 Aligned_cols=69 Identities=28% Similarity=0.434 Sum_probs=65.3
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCC-hHHHHHHHHHhcc
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDSIRRQIGH 397 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~-~~~~~~l~~~l~~ 397 (441)
.++|||.++|||||||+|+++|+++|++|++|+|+|+|++++|+|||+|.+|.|+. ++.++.|+++|..
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 37899999999999999999999999999999999999999999999999999996 6788999999875
No 20
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.80 E-value=3.2e-19 Score=139.31 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=66.0
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCC-hHHHHHHHHHhcccc
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD-PKIIDSIRRQIGHTK 399 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~-~~~~~~l~~~l~~~~ 399 (441)
++|||.++|||||||+|+++|.++|++|++|+|+|+|++++|+|||++.+|.|+. +++++.|+++|.+++
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al 72 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAI 72 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999996 668899999998744
No 21
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.75 E-value=4.1e-18 Score=133.06 Aligned_cols=70 Identities=24% Similarity=0.338 Sum_probs=64.7
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEE--eeCCeeEEEEEEEcCCCCCCC-hHHHHHHHHHhccccc
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEIS--TIGGKVKDTFYVTDVTGNPVD-PKIIDSIRRQIGHTKL 400 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~--T~g~~~~d~F~v~d~~g~~~~-~~~~~~l~~~l~~~~~ 400 (441)
|+|||.+.|||||||+|+++|+++|++|++|||+ |+|++++|+||| +.+|.+++ +++++.|+++|.++++
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999 999999999999 88898885 6788999999988554
No 22
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.75 E-value=1.2e-17 Score=130.44 Aligned_cols=75 Identities=65% Similarity=1.131 Sum_probs=71.7
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh
Q 013535 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR 325 (441)
Q Consensus 251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r 325 (441)
+|+|+|.|+||||||++|+++|+++|++|..|+|.|.++++.|+|||++.+|.|+.++.+++.|+++|.++|.||
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~ 75 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR 75 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999988654
No 23
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.71 E-value=7.4e-17 Score=125.12 Aligned_cols=69 Identities=28% Similarity=0.371 Sum_probs=65.6
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 013535 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (441)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (441)
+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|++++|+|||++ .+|.++.++++++.|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999999999999999 68999999999999998875
No 24
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.67 E-value=5.8e-16 Score=142.87 Aligned_cols=140 Identities=14% Similarity=0.138 Sum_probs=110.4
Q ss_pred CCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh-----
Q 013535 249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE----- 323 (441)
Q Consensus 249 ~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~----- 323 (441)
..+.+|++.|+||||++++++++|+++||||.+++....+|.+.-++.|. +.+ ...+.|+.+|...-.
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~~----~~~~~le~~L~~l~~~~~L~ 78 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GSW----NAITLIESTLPLKGAELDLL 78 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CCh----hHHHHHHHHHHhhhhhcCeE
Confidence 36789999999999999999999999999999999999999988888873 333 467778887754321
Q ss_pred ---hhc--------CCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCC--eeEEEEEEEcCCCCCCChHHHHH
Q 013535 324 ---RRA--------SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG--KVKDTFYVTDVTGNPVDPKIIDS 390 (441)
Q Consensus 324 ---~r~--------~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~--~~~d~F~v~d~~g~~~~~~~~~~ 390 (441)
++. +.++.++|.+.|||||+++||++|+++|+||.+.+..|+++ ...+.|.+.-.-..|.+ ..++.
T Consensus 79 i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~-~~~~~ 157 (190)
T PRK11589 79 IVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS-QDAAN 157 (190)
T ss_pred EEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC-CCHHH
Confidence 111 11489999999999999999999999999999999999986 67788887655455533 22444
Q ss_pred HHHHhc
Q 013535 391 IRRQIG 396 (441)
Q Consensus 391 l~~~l~ 396 (441)
|+++|.
T Consensus 158 L~~~l~ 163 (190)
T PRK11589 158 IEQAFK 163 (190)
T ss_pred HHHHHH
Confidence 555444
No 25
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.67 E-value=5.5e-16 Score=121.12 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=67.6
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEE--eeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW--THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~--T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (441)
|+|+|.++||||||++|+++|+++|++|++|+|. |.|++++|+||| + ..|.++.++++++.|+++|.++|..
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999999 999999999999 6 4788899999999999999998864
No 26
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.62 E-value=4.4e-15 Score=116.63 Aligned_cols=73 Identities=66% Similarity=0.996 Sum_probs=68.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhhcC
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST-GYAIKDPKRLSTIKELLFNVLRG 190 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~-g~~~~~~~~~~~l~~~L~~~L~~ 190 (441)
|+|+|.++||||||++||++|+++|+||++|+++|.++++.|+|+|++ .+ +.++.++++++++++.|.++|.|
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d-~~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD-EETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc-CcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999999999999999999999 46 77788889999999999998864
No 27
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.58 E-value=3.5e-14 Score=131.03 Aligned_cols=152 Identities=13% Similarity=0.127 Sum_probs=109.1
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535 24 CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS 103 (441)
Q Consensus 24 ~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~ 103 (441)
...+++|+++|+||||++++++++|+++||||+++++...+|.|.-++.|..+ |.....|+..|...... ..
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~-------~~~~~~le~~L~~l~~~-~~ 76 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS-------WNAITLIESTLPLKGAE-LD 76 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC-------hhHHHHHHHHHHhhhhh-cC
Confidence 34678999999999999999999999999999999999999988878887332 34556667666554310 01
Q ss_pred cceee---ee---cCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCC------eEEEEEEEEeCCCCCCC
Q 013535 104 LRSSV---GV---MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND------RAAAVVHVTDHSTGYAI 171 (441)
Q Consensus 104 ~~~~v---~~---~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~------~~~dvF~V~~~~~g~~~ 171 (441)
....+ .. ......+.++|+|.||||+++.+|++|+++|+||.+.+..|.+. .....|.+.-| .+.
T Consensus 77 L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP-~~~-- 153 (190)
T PRK11589 77 LLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP-ASQ-- 153 (190)
T ss_pred eEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC-CCC--
Confidence 11111 11 11112589999999999999999999999999999999888764 23444455442 222
Q ss_pred CCHHHHHHHHHHHHHhhcC
Q 013535 172 KDPKRLSTIKELLFNVLRG 190 (441)
Q Consensus 172 ~~~~~~~~l~~~L~~~L~~ 190 (441)
..+.++.+|.+....
T Consensus 154 ----~~~~L~~~l~~l~~e 168 (190)
T PRK11589 154 ----DAANIEQAFKALCTE 168 (190)
T ss_pred ----CHHHHHHHHHHHHHH
Confidence 246777777664443
No 28
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.58 E-value=1.9e-14 Score=113.10 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=66.7
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccC-CCCCCCHHHHHHHHHHHHHHH
Q 013535 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVD-GLPISSEAERERVIQCLEAAI 322 (441)
Q Consensus 252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~-g~~i~~~~~~~~l~~~L~~~L 322 (441)
|+|+|+++||||||++++++|+++||||++|++.|.++++.|+|+|++++ |.++.+++++++|++.|.+.|
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999988 888888889999999998765
No 29
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.58 E-value=1.7e-14 Score=112.92 Aligned_cols=70 Identities=26% Similarity=0.365 Sum_probs=65.4
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH
Q 013535 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA 321 (441)
Q Consensus 252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~ 321 (441)
++|+|+++||||||++++++|+.+|+||++|+|.|. +|+++|+|+|++.+|.++.+++++++|++.|.+.
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhh
Confidence 689999999999999999999999999999999998 6899999999999999887778999999998765
No 30
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=2.3e-14 Score=112.22 Aligned_cols=71 Identities=34% Similarity=0.524 Sum_probs=65.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (441)
+.|+|+++||||||+++|++|+.+|+||++|+|+|. ++++.|+|+|++ ..+.++.++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence 689999999999999999999999999999999998 689999999999 57888877889999999998764
No 31
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.55 E-value=1.3e-14 Score=128.34 Aligned_cols=142 Identities=17% Similarity=0.179 Sum_probs=115.1
Q ss_pred CCCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH-----H
Q 013535 248 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA-----I 322 (441)
Q Consensus 248 ~~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~-----L 322 (441)
..++.+|+++++||||+...+++...++||||.++|+...|+.+.-+..|. |.| +...+|+++|... |
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs~----dav~~le~~l~~l~~~~~L 74 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GSW----DAVTLLEATLPLLGAELDL 74 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eCH----HHHHHHHHHhhcccccCCe
Confidence 356899999999999999999999999999999999999999887666654 444 6788888888532 1
Q ss_pred ----hhh-------cCCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCe--eEEEEEEEcCCCCCCChHHHH
Q 013535 323 ----ERR-------ASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK--VKDTFYVTDVTGNPVDPKIID 389 (441)
Q Consensus 323 ----~~r-------~~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~--~~d~F~v~d~~g~~~~~~~~~ 389 (441)
.+. .+.++.++|.+.|||||+.++|++|.++|+||++....|+... ..-.|.+.-.-+.|.+ ..++
T Consensus 75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~-~~i~ 153 (176)
T COG2716 75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN-LSIS 153 (176)
T ss_pred EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc-CcHH
Confidence 111 1236899999999999999999999999999999999998654 6668988666667765 4556
Q ss_pred HHHHHhcc
Q 013535 390 SIRRQIGH 397 (441)
Q Consensus 390 ~l~~~l~~ 397 (441)
.|+++|++
T Consensus 154 ~l~~~f~a 161 (176)
T COG2716 154 ALRDAFEA 161 (176)
T ss_pred HHHHHHHH
Confidence 77776664
No 32
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.53 E-value=7.8e-14 Score=110.12 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=64.5
Q ss_pred EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013535 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (441)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (441)
.++|+++||||||+++|++|+++|+||++|+|.| .++++.|+|+|+++ .+. ..+++++++++++|.++|..
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999997 79999999999994 555 55678999999999998875
No 33
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.52 E-value=1.3e-13 Score=108.84 Aligned_cols=70 Identities=21% Similarity=0.352 Sum_probs=63.4
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh
Q 013535 253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT-GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE 323 (441)
Q Consensus 253 ~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~ 323 (441)
+++|+++||||||++++++|+++|+||++|+|.| .+|+++|+|+|++++|. ..+++++++|+++|.+.|.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLG 72 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHc
Confidence 5899999999999999999999999999999997 58999999999998777 5556789999999988764
No 34
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.47 E-value=3.7e-13 Score=103.11 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=55.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHh
Q 013535 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94 (441)
Q Consensus 28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L 94 (441)
.+|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|.+.+|.. ...+.+.++++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~--~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE--TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc--hHHHHHHHHHhh
Confidence 58999999999999999999999999999999996 889999999999988752 123445555554
No 35
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.38 E-value=3.8e-12 Score=97.54 Aligned_cols=65 Identities=20% Similarity=0.199 Sum_probs=55.2
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH
Q 013535 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI 322 (441)
Q Consensus 252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L 322 (441)
.+|.|+++||||||++++++|+.+|+||++|+|.|+ +|+++|+|+|.+.+|.- .+.|+++|+++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~------~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE------TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc------hHHHHHHHHHhh
Confidence 478999999999999999999999999999999987 78999999999988762 334555555443
No 36
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.31 E-value=1e-11 Score=110.10 Aligned_cols=154 Identities=12% Similarity=0.160 Sum_probs=113.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCC---CC
Q 013535 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS---FA 101 (441)
Q Consensus 25 ~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~---~~ 101 (441)
.+++.|++++.|+||+...+|++..++||||+++++...++.+..+..+..+ |+....|+.+|....+ +.
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs-------~dav~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS-------WDAVTLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC-------HHHHHHHHHHhhcccccCCeE
Confidence 4578999999999999999999999999999999999988887766555333 7778888988866543 11
Q ss_pred CCccee-eee-cCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHH
Q 013535 102 PSLRSS-VGV-MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRL 177 (441)
Q Consensus 102 ~~~~~~-v~~-~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~~~dvF~V~~~~~g~~~~~~~~~ 177 (441)
..+.+. ... ......+.+.|.+.||||++.++|.+|..+|+||++....|. .+.-.-.|.+.- .-.-|. .-..
T Consensus 76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa--~~~i 152 (176)
T COG2716 76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPA--NLSI 152 (176)
T ss_pred EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCC--cCcH
Confidence 111111 011 355678999999999999999999999999999999988885 333445565544 222333 2245
Q ss_pred HHHHHHHHHhh
Q 013535 178 STIKELLFNVL 188 (441)
Q Consensus 178 ~~l~~~L~~~L 188 (441)
..|++++.+..
T Consensus 153 ~~l~~~f~al~ 163 (176)
T COG2716 153 SALRDAFEALC 163 (176)
T ss_pred HHHHHHHHHHH
Confidence 67777776533
No 37
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.30 E-value=1.4e-11 Score=133.69 Aligned_cols=120 Identities=16% Similarity=0.158 Sum_probs=102.7
Q ss_pred EEEEEEe-cCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh--hh-cC
Q 013535 252 TVITMRS-KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE--RR-AS 327 (441)
Q Consensus 252 t~I~V~~-~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~--~r-~~ 327 (441)
-.++|.. +|++|+|.+++++|+.+|++|++|++.+ +|.++..|.|....|.+.++....+.++.++...+. .. .|
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT 625 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence 4678887 9999999999999999999999999999 888899999999999998776555556555543332 11 12
Q ss_pred C----ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEE
Q 013535 328 E----GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVT 376 (441)
Q Consensus 328 ~----~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~ 376 (441)
+ ++++||++.||||+|+.|+++|. .|.+|+++|.|..++|.||+.
T Consensus 626 ~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 626 ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 2 57999999999999999999999 899999999999999999996
No 38
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.29 E-value=3e-11 Score=94.29 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=61.5
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHH
Q 013535 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLE 319 (441)
Q Consensus 252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~ 319 (441)
+.|+|+++||||+|++++++|+++|+||.+|++.|.+++++|+|+|.+++|.++ +++++++|+++|.
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999889999999999998877 5568888888775
No 39
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.27 E-value=3.9e-11 Score=93.67 Aligned_cols=67 Identities=34% Similarity=0.495 Sum_probs=60.5
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (441)
+.|+|.++|+||+|++|+++|+++|+||++|+++|.++.+.|+|+|++ .++.++ +++++++++++|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~-~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC-CCCCcC-CHHHHHHHHHHhc
Confidence 689999999999999999999999999999999998889999999999 477777 6778888887764
No 40
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.22 E-value=1.5e-10 Score=125.77 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=119.8
Q ss_pred EEEEEEc-cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCC-CCcc
Q 013535 28 TVIKVDS-VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA-PSLR 105 (441)
Q Consensus 28 ~~v~V~~-~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~-~~~~ 105 (441)
-.++|.. +|++|++.+++++|+.+|++|.+|++.+ +|.++..|.|....|.+..+..+.+.+..++.+..+.. +.++
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT 625 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence 4777776 9999999999999999999999999999 88888999999888888777778888888888877532 2233
Q ss_pred eeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 013535 106 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (441)
Q Consensus 106 ~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (441)
+.+.+. ++++|.+.||+|+|+.++++|. +|..|++.|.|..++|+|++.+ +. ...++++++.
T Consensus 626 ~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~---~~------~r~~~~~~~~ 687 (693)
T PRK00227 626 ATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP---GF------DRATVERDVT 687 (693)
T ss_pred ceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC---cc------cHHHHHHHHH
Confidence 333332 8999999999999999999999 8999999999999999999985 11 1377888888
Q ss_pred HhhcC
Q 013535 186 NVLRG 190 (441)
Q Consensus 186 ~~L~~ 190 (441)
.+|.+
T Consensus 688 ~~~~~ 692 (693)
T PRK00227 688 RVLAG 692 (693)
T ss_pred HHHhc
Confidence 77764
No 41
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.21 E-value=1.4e-10 Score=89.41 Aligned_cols=69 Identities=43% Similarity=0.771 Sum_probs=63.4
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhccc
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHT 398 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~ 398 (441)
|.++|.+.||||+|++|+++|+++|++|.++++.|.++.+.|+|++++..|.|.+++.+++|++.|..+
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999999889999999999999987667888899988763
No 42
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.18 E-value=2.3e-10 Score=88.19 Aligned_cols=70 Identities=41% Similarity=0.609 Sum_probs=63.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (441)
|.+.|.++|+||+|++|+++|+.+|+||.++++.|.++.+.|.|++++ ..+.+. +.+++++|++.|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999998889999999999 577774 6789999999987754
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.87 E-value=2.3e-08 Score=76.63 Aligned_cols=70 Identities=43% Similarity=0.649 Sum_probs=60.7
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (441)
+.|.|.++|+||+|++++++|+++|++|.++++.+.++...++|++.+ ..+.+. ++++++++++.|..++
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~-~~~~~~-~~~~~~~l~~~l~~~~ 70 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPERIARLEEALEDAL 70 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence 368899999999999999999999999999999998778999999998 455554 5678999999987653
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.84 E-value=3.5e-08 Score=75.57 Aligned_cols=68 Identities=41% Similarity=0.686 Sum_probs=60.2
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
+.|.|.+.|+||+|++|+.+|+++|++|.++++.|.++...+.|++.+.++.+.++++++.|++.|..
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~ 68 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALED 68 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence 36889999999999999999999999999999999888999999999887777666677888887754
No 45
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.62 E-value=2.7e-07 Score=72.67 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=50.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcc
Q 013535 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (441)
Q Consensus 27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~ 96 (441)
+..|+++|+||||+++.++++|+++||||.+.++.+.+|.+.-.+.|.-+ |...+.|+++|..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~ 64 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEE 64 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHH
Confidence 46899999999999999999999999999999999999998888888655 3345666666654
No 46
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.61 E-value=4e-07 Score=71.72 Aligned_cols=66 Identities=24% Similarity=0.388 Sum_probs=55.8
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (441)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (441)
..+|++.|+||||+++.++++|+++|+||.+.+..+.++.+...+.|.-+ ++..++++++|.+...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999998872 4567889999887543
No 47
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.46 E-value=1.1e-06 Score=69.33 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=43.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013535 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVID 75 (441)
Q Consensus 28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~ 75 (441)
+.|++.|+||||+.+++++.|+++|+||++++.+..+|+++-...+..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~ 49 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG 49 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe
Confidence 689999999999999999999999999999999998888876666643
No 48
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.45 E-value=7.7e-07 Score=65.73 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=51.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHH
Q 013535 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEV 86 (441)
Q Consensus 28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~ 86 (441)
++|+|.|||+.||-.++|+++.+.|++|..++++|++.|++.+|+|.......-..|..
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~l 59 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDL 59 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHH
Confidence 47999999999999999999999999999999999999999999997654333345654
No 49
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.38 E-value=7e-06 Score=68.59 Aligned_cols=114 Identities=25% Similarity=0.267 Sum_probs=83.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCccee
Q 013535 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSS 107 (441)
Q Consensus 28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~~ 107 (441)
-+|.|...|+||-++..+..|.++|+||..-.|.-.+.+-+...+|..++ .. ..+|.+..- .+
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d-------~A----~~~Lee~gF-----~V- 66 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPD-------EA----HSVLEEAGF-----TV- 66 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChH-------HH----HHHHHHCCc-----EE-
Confidence 37899999999999999999999999999766654555545556663332 22 345544331 01
Q ss_pred eeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEe
Q 013535 108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (441)
Q Consensus 108 v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~ 164 (441)
...-++-|...|+||-|+.|+++|.++++|+..+..+++. ..+.-+|.+.|
T Consensus 67 ------r~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 67 ------RETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred ------EeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 1345678889999999999999999999999999999864 44555555433
No 50
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.32 E-value=2.2e-06 Score=67.16 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=47.6
Q ss_pred EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
+++|.++||||++++|+++|+++|+||...+-++++++-.-.|.+.-+.+. ..+.|+++|..
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~-----~~~~l~~~l~~ 62 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA-----DSEALLKDLLF 62 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC-----CHHHHHHHHHH
Confidence 478999999999999999999999999999999998776666666544332 23455555443
No 51
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.31 E-value=3.2e-06 Score=66.26 Aligned_cols=49 Identities=18% Similarity=0.078 Sum_probs=44.0
Q ss_pred EEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCC
Q 013535 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDG 78 (441)
Q Consensus 30 v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g 78 (441)
|+|.++||||+.++++++|+++|+||.+.+..+.++.+.-.+.+..+.+
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~ 50 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS 50 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence 7899999999999999999999999999998887888887888876654
No 52
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.29 E-value=8.9e-06 Score=61.28 Aligned_cols=61 Identities=26% Similarity=0.348 Sum_probs=47.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCC--eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND--RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~--~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
|.|.+.++||||+|++++.+|+++|+||..+.+.+.++ .....+...+ ....+++.+.|.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence 57889999999999999999999999999999999876 3334444333 2344666666655
No 53
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.27 E-value=3.3e-05 Score=64.62 Aligned_cols=111 Identities=15% Similarity=0.112 Sum_probs=83.5
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH-HhhhcCCce
Q 013535 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA-IERRASEGL 330 (441)
Q Consensus 252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~-L~~r~~~~~ 330 (441)
-+|+|+..++||-|+.++..|.+.|+||..-.|.-+++.-+-.+.|.++ +.-.+.|+++ + .....-
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~gF--~Vr~~d 70 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEAGF--TVRETD 70 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHCCc--EEEeee
Confidence 3689999999999999999999999999999998888766666666432 1122334331 0 011245
Q ss_pred EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC-CeeEEEEEE
Q 013535 331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYV 375 (441)
Q Consensus 331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g-~~~~d~F~v 375 (441)
++-|...|+||=|..|+.+|.++++|+.++..-+.- +.+.-.|.+
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ 116 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV 116 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh
Confidence 888999999999999999999999999999876543 445555544
No 54
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.24 E-value=1.3e-05 Score=60.34 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=46.9
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCC--eEEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 013535 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT--EAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (441)
Q Consensus 252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~--~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~ 320 (441)
+.|.|.++||||+|++++++|+++|+||..+...+.++ .....+.+.+ ....+.+.++|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD--------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE--------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC--------CCCHHHHHHHHHc
Confidence 46899999999999999999999999999999999865 4444444433 2355566666654
No 55
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.23 E-value=8.9e-06 Score=64.18 Aligned_cols=63 Identities=21% Similarity=0.380 Sum_probs=51.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (441)
.+|++.|+||||+.+.|+++|+++|+||.+.+.++.+++......+..+ . ...+.+++.|...
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~----~----~~~~~l~~~l~~~ 64 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS----W----DAIAKLEAALPGL 64 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec----c----ccHHHHHHHHHHH
Confidence 6789999999999999999999999999999999988887666655541 1 1247777777763
No 56
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.11 E-value=1.1e-05 Score=59.63 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=57.4
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH
Q 013535 252 TVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA 321 (441)
Q Consensus 252 t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~ 321 (441)
++|+|.|||+.||=.++++++.+.|++|..+.++|.|.++.-+|+|....... +-+++.|+.+|..+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~---~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSI---KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCC---cccHHHHHHHHHhc
Confidence 47999999999999999999999999999999999999999999998644321 24788888887653
No 57
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=98.09 E-value=0.0001 Score=72.49 Aligned_cols=116 Identities=8% Similarity=0.095 Sum_probs=74.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCcce
Q 013535 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS 106 (441)
Q Consensus 29 ~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~--~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~ 106 (441)
.|+|.|+|+||+.+.+++.|+++|+||++.+.+.+ .|+|+-.+.+..+ +...+.+++.+.+..++..... ...
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~~----l~i 76 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKFE----MTW 76 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhC----CEE
Confidence 58999999999999999999999999999999984 4777767776443 2223333444444442333332 112
Q ss_pred eeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535 107 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (441)
Q Consensus 107 ~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T 151 (441)
.+.. ......|-|.+.-+-.-|..+......-.+++.=+-+.+
T Consensus 77 ~l~~--~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vis 119 (280)
T TIGR00655 77 ELIL--ADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVIS 119 (280)
T ss_pred EEec--CCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEE
Confidence 2222 122334555555556677777777777767655555554
No 58
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.06 E-value=7.1e-06 Score=64.03 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=45.6
Q ss_pred EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
+|++.++||||++++|+++|+++|+||...+..+... ...|++.-.-..|-.+...++|+++|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPD--SGRFFMRVEFELEGFDLSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCC--CCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 4789999999999999999999999999999887422 2357775432223111134566665554
No 59
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.05 E-value=1.5e-05 Score=64.36 Aligned_cols=49 Identities=24% Similarity=0.263 Sum_probs=43.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 013535 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC 76 (441)
Q Consensus 28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~ 76 (441)
..|++.|+|+||++++++++|+++|+||.+.+.++.++.+.-.+.+..+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~ 50 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS 50 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence 4789999999999999999999999999999998877877767777544
No 60
>PRK00194 hypothetical protein; Validated
Probab=98.02 E-value=2e-05 Score=63.82 Aligned_cols=50 Identities=26% Similarity=0.290 Sum_probs=43.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 013535 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC 76 (441)
Q Consensus 27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~ 76 (441)
...|+|.|+|+||++++++++|+++|+||.+.+..+.+|.+.-.+.+..+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~ 52 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS 52 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec
Confidence 57899999999999999999999999999999988878877766666443
No 61
>PRK07431 aspartate kinase; Provisional
Probab=98.02 E-value=0.022 Score=62.07 Aligned_cols=258 Identities=13% Similarity=0.180 Sum_probs=149.7
Q ss_pred ccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCcceeeeecC
Q 013535 34 SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMP 112 (441)
Q Consensus 34 ~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~~v~~~~ 112 (441)
.++.+|+++++...|+++|+||.--.... ..+..-..|.+...+- .+..+.|+ .+..... ...+. .
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~-~l~~~~~-----~~~i~--~ 344 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAE-AIAPALG-----GAEVL--V 344 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHH-HHHHHcC-----CCcEE--E
Confidence 57889999999999999999999665443 2333333567633221 11222222 2222111 01122 2
Q ss_pred CCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535 113 TEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (441)
Q Consensus 113 ~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (441)
..+...|.+.|. +.||+++++..+|++.|++|.... +. ...-.|.|.. +..++..+.|++.+.
T Consensus 345 ~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS--e~~Is~vv~~----------~d~~~av~~Lh~~f~ 410 (587)
T PRK07431 345 ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS--EVKVSCVIDA----------EDGDKALRAVCEAFE 410 (587)
T ss_pred eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC--CCEEEEEEcH----------HHHHHHHHHHHHHhc
Confidence 357788888885 799999999999999999997665 21 1222333322 234556666666664
Q ss_pred CCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEE-EecCCcchHHHH
Q 013535 190 GYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITM-RSKDRPKLLFDI 268 (441)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~t~I~V-~~~DrpGLl~~i 268 (441)
-+.. . ..+. +. . . +....+.-.+. ...+...|++ ..++.+|+++++
T Consensus 411 ~~~~-~---~~~~------------~~----~-~-----------~~~~~~v~gIa-~~~~~~~i~l~~~~~~~g~~a~i 457 (587)
T PRK07431 411 LEDS-Q---IEIN------------PT----A-S-----------GQDEPEVRGVA-LDRNQAQLAIRNVPDRPGMAASI 457 (587)
T ss_pred cCCc-c---cccC------------cc----c-c-----------CCCCCcEEEEE-ccCCEEEEEECCCCCCccHHHHH
Confidence 4321 0 0011 00 0 0 01112211111 2334555555 467889999999
Q ss_pred HHHHHhCCceEEEEEEEec-C--CeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhc--------CCceEEEEEeC
Q 013535 269 VCTLTDMQYVVFHGMVNTG-R--TEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA--------SEGLELELCTE 337 (441)
Q Consensus 269 ~~~L~~~glnI~~A~i~t~-~--~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~--------~~~~~ieV~~~ 337 (441)
...|+++|++|..-..... + |..--.|.+.. ....++.+.+++ +.+.. ..-..|.|.+.
T Consensus 458 f~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~---------~~~~~~~~~l~~-l~~~~~~~~i~~~~~va~VSvVG~ 527 (587)
T PRK07431 458 FGALAEANISVDMIVQSQRCRSDGTRDISFTVPK---------EDREAAQKVLRE-LAKQLPGAEVEDGPAIAKVSIVGA 527 (587)
T ss_pred HHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH---------HHHHHHHHHHHH-HHHhcCCceEEEeCCeEEEEEECC
Confidence 9999999999986533211 1 22333355432 122233333322 22111 22457888886
Q ss_pred ---CccchHHHHHHHHHHCCceEEEEE
Q 013535 338 ---DRVGLLSDITRIFRENSLSIKRAE 361 (441)
Q Consensus 338 ---DrpGLL~~It~~l~~~~v~I~~A~ 361 (441)
.+||+++++.++|.+.|++|....
T Consensus 528 gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 528 GMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred CccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 889999999999999999997666
No 62
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=98.00 E-value=0.00015 Score=71.56 Aligned_cols=118 Identities=8% Similarity=0.034 Sum_probs=70.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEE--ecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCc
Q 013535 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS--SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL 104 (441)
Q Consensus 27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~--t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~ 104 (441)
..+|+|.|+||||+.++++++|+++|+||++.+.+ +..|.++-.+.+.+.....++..++.+.+.+ +..... .
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~-l~~~l~----l 83 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQP-VAEKFD----M 83 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHH-HHHHhC----C
Confidence 46899999999999999999999999999999997 3334444343333221112222333344433 222221 1
Q ss_pred ceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535 105 RSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (441)
Q Consensus 105 ~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T 151 (441)
...+.+ ......|-|...-+..-|..+........++..=+-+.+
T Consensus 84 ~~~i~~--~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vis 128 (289)
T PRK13010 84 QWAIHP--DGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIIS 128 (289)
T ss_pred eEEEec--CCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEE
Confidence 222222 223334555555556677777777777777665555555
No 63
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.98 E-value=1.7e-05 Score=62.75 Aligned_cols=66 Identities=17% Similarity=0.339 Sum_probs=47.4
Q ss_pred EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCe--eEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK--VKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~--~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
++.+.++||||++++|+++|+++|+||.+.+..|.+.. ....|+++-....|- ....++|+++|..
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHH
Confidence 47899999999999999999999999999999998733 445666544323331 1224555555544
No 64
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.97 E-value=4.7e-05 Score=60.19 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=41.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecC------CEEEEEEEEEcCC
Q 013535 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG------GWFMDVFNVIDCD 77 (441)
Q Consensus 29 ~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~------g~~~d~f~V~~~~ 77 (441)
.|+|.|+|+||+.++|++.|+++|+||.+.+..+.+ +.+.-.+.+..+.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~ 55 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA 55 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC
Confidence 378999999999999999999999999999998754 5666666665553
No 65
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.94 E-value=7.9e-05 Score=58.06 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=38.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcC
Q 013535 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDC 76 (441)
Q Consensus 29 ~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~ 76 (441)
.|+|.|+||||++++++++|+++|+||.+.+.++ ..+.+.-.+.+..+
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~ 50 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE 50 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC
Confidence 4789999999999999999999999999999986 33454444454333
No 66
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.92 E-value=3.5e-05 Score=62.25 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=53.2
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (441)
..+++.|+|+||+++.|+++|+++|+||.+.+..+.++...-.+.+.-+ +... ..+.+++.|.....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~~----~~~~L~~~l~~l~~ 68 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESNL----DFAELQEELEELGK 68 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCCC----CHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999988877777777652 1111 24778888776443
No 67
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.78 E-value=0.00049 Score=67.98 Aligned_cols=118 Identities=13% Similarity=0.122 Sum_probs=69.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS 103 (441)
Q Consensus 26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~ 103 (441)
....|+|.|+||||+.+.++++|+++|+||.+.+.++ .+|.+.-.+.+.. +..+.+ ...|+++|..... .
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~~----~~~L~~~L~~l~~---~ 76 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIFN----LETLRADFAALAE---E 76 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCCC----HHHHHHHHHHHHH---H
Confidence 4578999999999999999999999999999999998 7787666666643 111111 2334444433211 0
Q ss_pred cceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535 104 LRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (441)
Q Consensus 104 ~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T 151 (441)
....+..........|-|.+.-+-.-|..+........++..=+-+.|
T Consensus 77 l~l~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK06027 77 FEMDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVIS 124 (286)
T ss_pred hCCEEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEE
Confidence 011122211112233444444445556666666666555555444444
No 68
>PRK00194 hypothetical protein; Validated
Probab=97.77 E-value=0.00011 Score=59.54 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=42.0
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEE
Q 013535 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR 298 (441)
Q Consensus 251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~ 298 (441)
..+++|.|+||||+++++++.|+++|+||.+.+..+.++.+.-.+.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~ 50 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence 568999999999999999999999999999999888877766555554
No 69
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.69 E-value=0.00035 Score=55.18 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=50.4
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
-.+.|.|.+.||||+|++|+.++++.|+||.+..+.+. ++.+.-.|.+.-. +.++++++.+.|++
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHCT
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHHC
Confidence 45788999999999999999999999999999999994 5677777777552 45677777766643
No 70
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.68 E-value=0.0014 Score=64.74 Aligned_cols=116 Identities=8% Similarity=0.013 Sum_probs=72.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCc
Q 013535 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL 104 (441)
Q Consensus 27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~ 104 (441)
...|+|.|+||||+.+++|++|+++|+||.+.+.++ .++.+.-.+.+..+.+. +...+.+.|++ ++.... .
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~--~~~~L~~~L~~-l~~~l~----l 79 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL--DEDALRAGFAP-IAARFG----M 79 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC--CHHHHHHHHHH-HHHHhC----c
Confidence 468999999999999999999999999999999985 55677666666545432 22334344443 333322 1
Q ss_pred ceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535 105 RSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (441)
Q Consensus 105 ~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T 151 (441)
...+.+.. ....|-|.+.-+-.-|..+........++.+=+-+.+
T Consensus 80 ~i~i~~~~--~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK13011 80 QWELHDPA--ARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS 124 (286)
T ss_pred EEEEeecc--cCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence 12222211 2224444444466667777777777766655555555
No 71
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.67 E-value=0.00034 Score=55.24 Aligned_cols=64 Identities=31% Similarity=0.457 Sum_probs=49.4
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
++.|+|.+.||||+|++|++++++.|+||.++++.+. ++.+.-.|.+.-. +.+++..|-+.|.+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-----d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-----DLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-----SHHHHHHHHHHHCT
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-----CHHHHHHHHHHHHC
Confidence 4678999999999999999999999999999999985 5667777766433 23677777777765
No 72
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.66 E-value=5.1e-05 Score=60.80 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=42.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 013535 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC 76 (441)
Q Consensus 27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~ 76 (441)
...|||.+.||||+.+.++++|+++|.||++-+..-.+|++.-.+.|..+
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~ 52 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS 52 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC
Confidence 35899999999999999999999999999988877788887766666433
No 73
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.00069 Score=64.83 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=48.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCchHHHHHHHH
Q 013535 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (441)
Q Consensus 26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~ 92 (441)
...++++.|||++|++++|++.|+++||||.+++.++ ..|+|+-.... ..++.+.+.+.+++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f-~~~~~~~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEF-EGEGGPLDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEE-ecCCCcccHHHHHHHHHH
Confidence 4579999999999999999999999999999999997 34777644333 233443433444444443
No 74
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.40 E-value=0.0048 Score=60.96 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=50.3
Q ss_pred CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH
Q 013535 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT--GRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA 321 (441)
Q Consensus 250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t--~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~ 321 (441)
...+|+|.|+||||+.++++++|+++|+||.+.+..+ .+|.+.-.+.+.- +..+ ...+.|+++|++.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~----~~~~~L~~~L~~l 73 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLI----FNLETLRADFAAL 73 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCC----CCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999 6776554444432 1111 1256777777654
No 75
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.39 E-value=0.0018 Score=49.94 Aligned_cols=61 Identities=13% Similarity=0.252 Sum_probs=47.7
Q ss_pred EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
|.|.+.|+||+|++|+.++++.|+||.+....+. .+.+...|.+.- .+.++++++.+.|+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-------~~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-------PSEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-------CCHHHHHHHHHHHhc
Confidence 6789999999999999999999999999888765 356666665544 135677777777654
No 76
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.35 E-value=0.0041 Score=61.51 Aligned_cols=108 Identities=10% Similarity=0.082 Sum_probs=63.6
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEE--ecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh-----
Q 013535 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN--TGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE----- 323 (441)
Q Consensus 251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~--t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~----- 323 (441)
..+|+|.|+||||+.+.+++.|+++|+||.+.+.+ +..+.+.-.+.+.+...... ..+.|+++|.+.-.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l~ 84 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAA----SVDTFRQEFQPVAEKFDMQ 84 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCC----CHHHHHHHHHHHHHHhCCe
Confidence 45799999999999999999999999999999987 33343333322332211111 24566666654321
Q ss_pred ---hhcCCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEE
Q 013535 324 ---RRASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEI 362 (441)
Q Consensus 324 ---~r~~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i 362 (441)
+...+...|-|-+--+..-|.+|......-.++.+-.-+
T Consensus 85 ~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~v 126 (289)
T PRK13010 85 WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGI 126 (289)
T ss_pred EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEE
Confidence 111222333333333444566666666665555443333
No 77
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.35 E-value=0.0054 Score=60.42 Aligned_cols=105 Identities=10% Similarity=0.116 Sum_probs=68.4
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh------
Q 013535 253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER------ 324 (441)
Q Consensus 253 ~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~------ 324 (441)
+|+|.|+||||+.+.+++.|+++|+||.+.+.+.. .|++.-.+.+.-+.. .. ..+.|+++|.+.+..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~-~~----~~~~l~~~l~~~~~~~~~l~i 76 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-RL----EESSLLAAFKSALAEKFEMTW 76 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC-CC----CHHHHHHHHHHHHHHHhCCEE
Confidence 58999999999999999999999999999998885 366665555543321 11 245666666552211
Q ss_pred ---hcCCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEE
Q 013535 325 ---RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEI 362 (441)
Q Consensus 325 ---r~~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i 362 (441)
...+...|-|-+--+---|.+|......-.++++-+-+
T Consensus 77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v 117 (280)
T TIGR00655 77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV 117 (280)
T ss_pred EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence 11122334444444455678888887776665544443
No 78
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.32 E-value=0.0024 Score=49.24 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=46.5
Q ss_pred EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC-CeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g-~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
+.|.+.||||+|++|+.++++.|+||.+....+.. +.+.-.|-+.-. +.++++.+.+.|..
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-----~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-----SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-----CHHHHHHHHHHHhc
Confidence 68999999999999999999999999999887753 555555655322 23566666666665
No 79
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.26 E-value=0.0084 Score=59.27 Aligned_cols=108 Identities=9% Similarity=0.106 Sum_probs=69.0
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh----
Q 013535 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER---- 324 (441)
Q Consensus 251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~---- 324 (441)
..+|+|.|+||||+.+++++.|+++|+||.+.+..+. ++.+.-.+.+..+.+. ..+.|+++|++....
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~ 80 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQ 80 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcE
Confidence 4579999999999999999999999999999998864 3555545555433332 255666666554221
Q ss_pred ----hcCCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEe
Q 013535 325 ----RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST 364 (441)
Q Consensus 325 ----r~~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T 364 (441)
...+...|-|-+--+.--|..|..++..-.++.+-+-+-|
T Consensus 81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK13011 81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS 124 (286)
T ss_pred EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence 1112223333333355567777777776666554444433
No 80
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.21 E-value=0.0026 Score=49.96 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=48.5
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEe-eCCeeEEEEEEEcCCCCCCChHHHHHHHHHhccccccc
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEIST-IGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQV 402 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T-~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~~~~ 402 (441)
+.+.+...|+||+|++|+.+|+..|.||.+..+.- .......+-.+... ++..+++|...|.+ +.++
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~-----~~~~i~qi~kQL~K-LidV 70 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC-----TENEATLLVSQLKK-LINV 70 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC-----CHHHHHHHHHHHhC-CcCE
Confidence 57899999999999999999999999999999873 33333333333222 24567788888877 4433
No 81
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.16 E-value=0.00061 Score=54.69 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=40.4
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEE
Q 013535 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIR 298 (441)
Q Consensus 251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~ 298 (441)
..+|+|.++||||+.+.++++|+++|+||.+-.-.-.+|++.-.+.|.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~ 50 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence 468999999999999999999999999999876655677776666654
No 82
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.15 E-value=0.0024 Score=49.73 Aligned_cols=59 Identities=20% Similarity=0.439 Sum_probs=43.8
Q ss_pred EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
.++|.+.||+|+|++|+.++++.|+||.+..+.+. +. .+++-. .. +.+++..|-++|..
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~----i~l~i~-v~--~~~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR----IYLNFP-TI--EFEKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce----EEEEeE-ec--CHHHHHHHHHHHhC
Confidence 47899999999999999999999999999998775 22 333211 11 23566777777765
No 83
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.09 E-value=0.0051 Score=46.37 Aligned_cols=62 Identities=19% Similarity=0.386 Sum_probs=44.9
Q ss_pred EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee-CCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~-g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
.+.+.+.|+||+|.+|+.+|+++|++|.+....+. ++.....++..+. + + +.++.+.+.|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG---D-D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC---C-H-HHHHHHHHHHhC
Confidence 57889999999999999999999999999998775 3333333323232 1 3 456677777665
No 84
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.07 E-value=0.0037 Score=51.12 Aligned_cols=67 Identities=19% Similarity=0.314 Sum_probs=48.3
Q ss_pred CCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (441)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (441)
.....|.+...|+||+|++|+++|+..|.||.+..+......-.--+.+.-. + ++.++++.+.|.+.
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-----~~~i~Qi~kQL~KL 72 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-----DQRLEQMISQIEKL 72 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-----chHHHHHHHHHhCC
Confidence 4567799999999999999999999999999999876543322222233221 1 24678888887653
No 85
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.02 E-value=0.0068 Score=45.82 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=42.8
Q ss_pred EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-----CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-----NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-----~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
+.|..+|+||+|++|+.+|+++|+||.+...... .+.....|.+.. .+.++++.+.+.|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-------RGAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 3577899999999999999999999998876653 233444444433 134556677666654
No 86
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.99 E-value=0.0041 Score=48.38 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=43.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
.|.|.+.||+|+|++|+.++++.|+||.+..+.+. +. ..|.+.- .+.++++.+.+.|..
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v-------~~~~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPT-------IEFEKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEe-------cCHHHHHHHHHHHhC
Confidence 47899999999999999999999999999998775 33 2232222 235566777666654
No 87
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.98 E-value=0.0052 Score=48.29 Aligned_cols=62 Identities=5% Similarity=0.097 Sum_probs=45.3
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCC-eE-EEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RA-AAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~-~~-~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
..|.+...|+||.|++|+++|+..|+||.+..+.-..+ .. .-++.+.. ++...++|.+.|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~--------~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC--------TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhC
Confidence 46899999999999999999999999999988774332 22 22333222 24566777777765
No 88
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.97 E-value=0.0027 Score=46.37 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=38.5
Q ss_pred EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC-CeeEEEEEEEc
Q 013535 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTD 377 (441)
Q Consensus 332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g-~~~~d~F~v~d 377 (441)
+++...|+||.|.+++..|.++|+||.+..+...+ +.+.-.|-+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46789999999999999999999999999988765 56666666633
No 89
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.0048 Score=46.80 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=37.3
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEE
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV 375 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v 375 (441)
+.+.|...|+||.|++|+..|.++|+||.+..+...++. ..|.+
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl 45 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL 45 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence 357889999999999999999999999999998776553 45555
No 90
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.94 E-value=0.0031 Score=57.58 Aligned_cols=64 Identities=20% Similarity=0.348 Sum_probs=44.9
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
+.+.|.+.|+||+|++|+.+|+++|+||.+..+..........+.+.-+ + ++..+++|+++|.+
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~-~---~~~~ieqL~kQL~K 66 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP-G---DDRTIEQLTKQLYK 66 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE-C---CHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999996532222224444322 1 12235666666655
No 91
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.94 E-value=0.0029 Score=46.19 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=39.0
Q ss_pred EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEe
Q 013535 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (441)
Q Consensus 119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~ 164 (441)
+.+..+|+||.|++++.+|.++|+||.+..+...+ +.....|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 45788999999999999999999999999988765 66777776644
No 92
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.92 E-value=0.0059 Score=55.77 Aligned_cols=65 Identities=11% Similarity=0.275 Sum_probs=47.9
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (441)
..+.+.+.|+||+|++|+++|+++|+||.+-.+.+. .+...-++.+.. ++...++|.+.|.+...
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLid 69 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHhH
Confidence 578999999999999999999999999999999762 333333333321 12336888888877544
No 93
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.91 E-value=0.0072 Score=45.67 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=30.0
Q ss_pred EEEEeCCccchHHHHHHHHHHCCceEEEEEEEee
Q 013535 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTI 365 (441)
Q Consensus 332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~ 365 (441)
+.|..+|+||+|++|+++|+++|+||.+......
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 4678899999999999999999999998876543
No 94
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.90 E-value=0.0063 Score=46.32 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=37.5
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC--CeeEEEEEEE
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYVT 376 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g--~~~~d~F~v~ 376 (441)
+.+.|..+|+||.|++|++.|+++|+||.+....... ....-.|.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 4678999999999999999999999999998876652 2344455553
No 95
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.87 E-value=0.006 Score=48.67 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=47.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCe--EEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR--AAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~--~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (441)
..|.+...|+||.|++|+++|++.|+||.+-.+...... ...++.+.. | |+..++++.+.|.+.
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~Kl 68 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQQ 68 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhCC
Confidence 468899999999999999999999999999998764333 223333321 2 356678888887653
No 96
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.86 E-value=0.0043 Score=47.06 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=37.6
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEE
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~ 163 (441)
..+.|..+|+||.|++++.+|+++|+||.+..+...++. .++.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 467889999999999999999999999999998776553 445443
No 97
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.82 E-value=0.0069 Score=49.57 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=52.1
Q ss_pred CceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhccccccccc
Q 013535 328 EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKR 404 (441)
Q Consensus 328 ~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~~~~~~ 404 (441)
...+|.+...|+||+|++|+..|+..|.||++..+.-......-.+.+.-. + +..++++.+.|.+ +.++-.
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~----~~~i~Qi~kQL~K-LidVik 77 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D----DQRLEQMISQIEK-LEDVLK 77 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C----chHHHHHHHHHhC-CcCEEE
Confidence 357899999999999999999999999999999987554443333333222 1 3577888888887 444333
No 98
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.79 E-value=0.0062 Score=48.59 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=47.5
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
.++.+...|+||+|++|+..|...|+||.+..+........-.+-+.-..| ++..++++.+.|.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~K 67 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhC
Confidence 468889999999999999999999999999998754444333333322112 24566788888877
No 99
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.78 E-value=0.013 Score=44.47 Aligned_cols=61 Identities=21% Similarity=0.283 Sum_probs=43.8
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-C-eEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-D-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~-~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
..+.+..+|+||.|++++..|+++|+||.+....... + .....+.+.. ++..+++.+.|.+
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~---------~~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKT---------QEDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECC---------HHHHHHHHHHHHH
Confidence 4678899999999999999999999999988877652 2 3333444432 1234566666654
No 100
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.75 E-value=0.011 Score=45.32 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=43.6
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCC-eeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~-~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
+.+.|.+.|+||+|.+|++.|+++|+||.+....+..+ ......+++.. .+..++.++-+.|.+
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~----~~~~~l~~~i~~L~~ 65 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE----TSEAALNAALAEIEA 65 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc----CCHHHHHHHHHHHHc
Confidence 45889999999999999999999999999998765432 22223333322 133455555555554
No 101
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.75 E-value=0.011 Score=45.58 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=46.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHH-HHHHHHHHHHH
Q 013535 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPK-RLSTIKELLFN 186 (441)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~~~~g~~~~~~~-~~~~l~~~L~~ 186 (441)
.+.+.+.|+||+|++|+.+|+++|+||......+. ++.+.-.|.+... +.+ .++++.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence 57899999999999999999999999999876553 3555666666441 233 66777777654
No 102
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.70 E-value=0.01 Score=53.35 Aligned_cols=64 Identities=19% Similarity=0.372 Sum_probs=48.1
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
+++.|...|+||.|++|+..|+++|+||.+..+........-.+.+.- +| ++..+++|.++|.+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V-~~---d~~~i~qi~kQl~K 65 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV-VG---DDKVLEQITKQLNK 65 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE-EC---CHHHHHHHHHHHhc
Confidence 578999999999999999999999999999988766533333333321 12 34667888888887
No 103
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.69 E-value=0.013 Score=52.66 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=47.8
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~--~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (441)
..+++...|+||.|++|+++|+++|+||.+..+.... +...-++.|.. ++...+++.+.|.+.
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kl 66 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKL 66 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcC
Confidence 4688999999999999999999999999999887654 33344444422 245678888887653
No 104
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.65 E-value=0.015 Score=52.38 Aligned_cols=63 Identities=13% Similarity=0.247 Sum_probs=48.0
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~--~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (441)
..+++...|+||.|++|+++|+++|+||.+..+.... +...-++.+.. ++..++++.+.|.+.
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KL 67 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKL 67 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999998877643 33444444432 345678888887653
No 105
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.63 E-value=0.014 Score=43.71 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=36.9
Q ss_pred EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC--CeeEEEEEE
Q 013535 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG--GKVKDTFYV 375 (441)
Q Consensus 332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g--~~~~d~F~v 375 (441)
+.|.+.|+||+|++|+++|+++|+||.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67899999999999999999999999999987764 444445555
No 106
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.60 E-value=0.015 Score=52.41 Aligned_cols=68 Identities=19% Similarity=0.344 Sum_probs=48.9
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEE-EcCCCCCCChHHHHHHHHHhcccccccc
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV-TDVTGNPVDPKIIDSIRRQIGHTKLQVK 403 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v-~d~~g~~~~~~~~~~l~~~l~~~~~~~~ 403 (441)
+++.|...|+||.|++|+..|+++|+||.+..+....+...-.+.+ .+. ++..++++...|.+ +.++-
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~-----~~~~i~qi~kQl~K-LidV~ 71 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG-----DEQVIEQITKQLNK-LIDVL 71 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC-----CHHHHHHHHHHHhc-cccEE
Confidence 5789999999999999999999999999999876554232222222 222 34667788888877 44333
No 107
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.55 E-value=0.015 Score=45.67 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=48.0
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee-CCeeEE-EEEEEcCCCCCCChHHHHHHHHHhcccccccc
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKD-TFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVK 403 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~-g~~~~d-~F~v~d~~g~~~~~~~~~~l~~~l~~~~~~~~ 403 (441)
+.+.+...|+||.|++|+..|+..|.||.+..+.-. .+.... ++-+ . ++..+++|.+.|.+ +.++.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~------~~~~i~ql~kQL~K-L~dV~ 71 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A------SERPIDLLSSQLNK-LVDVA 71 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C------CCchHHHHHHHHhc-CcCeE
Confidence 578999999999999999999999999999998753 222333 3333 2 23456677777776 44443
No 108
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.54 E-value=0.011 Score=56.74 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=46.5
Q ss_pred CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 013535 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (441)
Q Consensus 250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~ 320 (441)
...++++.|||++|+.++|++.|+..|+||.++.-++. .|++.-.-.... .+.+. ..+.|++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~-~~~~~----~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG-EGGPL----DREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec-CCCcc----cHHHHHHHHHH
Confidence 35789999999999999999999999999999998864 355443222222 22222 34556666654
No 109
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.52 E-value=0.018 Score=45.40 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=38.6
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCC-eeEEEEEEEc
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTD 377 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~-~~~d~F~v~d 377 (441)
+.+.+...|+||.|++|...|+++|+||.+......+. ...=.|||.-
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 35677889999999999999999999999998666543 3455787743
No 110
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.51 E-value=0.014 Score=45.85 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=46.1
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
..+.+...|+||.|++++++|+..|.||.+-.+... ++...-++.+.+ +..++.|.+.|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---------~~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---------ERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---------CchHHHHHHHHhc
Confidence 578999999999999999999999999999998763 333444454422 2345777777755
No 111
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.42 E-value=0.031 Score=41.97 Aligned_cols=61 Identities=13% Similarity=0.247 Sum_probs=44.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-C-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-N-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~-~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
.+.+.+.|+||+|++|+.+|+++|++|.+....+. + +.+.-.|.+.. .+ ..++.+.+.|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-------DD-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-------CH-HHHHHHHHHHhC
Confidence 46788999999999999999999999999998775 3 33444444432 12 455666666653
No 112
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.42 E-value=0.022 Score=43.65 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=43.2
Q ss_pred EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 013535 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (441)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~--~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (441)
.|.+.+.|+||++++++.+|+++|+||.+....+.. +.+.-.+.+.. .+...++.+.+.|.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~-------~~~~~l~~~i~~L~ 64 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE-------TSEAALNAALAEIE 64 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc-------CCHHHHHHHHHHHH
Confidence 478889999999999999999999999999876542 33433443322 13455566666554
No 113
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.39 E-value=0.021 Score=42.83 Aligned_cols=33 Identities=18% Similarity=0.428 Sum_probs=30.5
Q ss_pred EEEEeCCccchHHHHHHHHHHCCceEEEEEEEe
Q 013535 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEIST 364 (441)
Q Consensus 332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T 364 (441)
+.+.+.|+||.|.+|++.|+++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 678999999999999999999999999998765
No 114
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.36 E-value=0.013 Score=43.70 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=31.6
Q ss_pred EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC
Q 013535 331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 366 (441)
Q Consensus 331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g 366 (441)
++.|..+|+||-|++++..|+++|+||.+.......
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 367889999999999999999999999988875544
No 115
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.35 E-value=0.032 Score=43.02 Aligned_cols=64 Identities=13% Similarity=0.071 Sum_probs=47.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhccc
Q 013535 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (441)
Q Consensus 29 ~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~ 97 (441)
.+.|.++|+||++++|++.++++|.||......+ .+|++--.|.+...+. +..++.|.+.|...
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~-----~~~l~~l~~~L~~i 66 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM-----NGDIDELLEELREI 66 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch-----HHHHHHHHHHHhcC
Confidence 5789999999999999999999999999887755 3466665677643321 22456666666553
No 116
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.35 E-value=0.024 Score=42.37 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=38.0
Q ss_pred EEEEccCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEE
Q 013535 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNV 73 (441)
Q Consensus 30 v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~--~g~~~d~f~V 73 (441)
+.|.++|++|++++++.+|+++|+||.+...... ++...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 5788999999999999999999999999998764 3677666766
No 117
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.25 E-value=0.032 Score=42.07 Aligned_cols=46 Identities=15% Similarity=0.411 Sum_probs=36.5
Q ss_pred EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEE
Q 013535 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVT 163 (441)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~ 163 (441)
.+.+.++|+||.|++++..|+++|+||.+....+.+ +...-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~ 48 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence 578899999999999999999999999988877653 3444444443
No 118
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.21 E-value=0.025 Score=43.19 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=34.7
Q ss_pred EEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEEEEE
Q 013535 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYV 375 (441)
Q Consensus 332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~F~v 375 (441)
+-+...|+||.+++|++.|+++|+||.+...... ++.+.=.|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 4568999999999999999999999999887553 3445444444
No 119
>PRK07431 aspartate kinase; Provisional
Probab=96.15 E-value=2.7 Score=45.88 Aligned_cols=191 Identities=14% Similarity=0.178 Sum_probs=114.8
Q ss_pred CCeEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCC--
Q 013535 25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS-- 99 (441)
Q Consensus 25 ~~~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~-- 99 (441)
.+...|.|.+. +.+|+.+++..+|++.|+||.... ..+..+ +|.|...+. ++..+.|.+.+.....
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~---sSe~~I-s~vv~~~d~-----~~av~~Lh~~f~~~~~~~ 416 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS---TSEVKV-SCVIDAEDG-----DKALRAVCEAFELEDSQI 416 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE---cCCCEE-EEEEcHHHH-----HHHHHHHHHHhccCCccc
Confidence 35678888875 789999999999999999997444 233223 355533221 3456777777744322
Q ss_pred -CCCC----cceee-eecCCCCeEEEEEE-eCCCcchHHHHHHHHHhcCCeEEEEEEEe-eC--CeEEEEEEEEeCCCCC
Q 013535 100 -FAPS----LRSSV-GVMPTEEHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNAEIWT-HN--DRAAAVVHVTDHSTGY 169 (441)
Q Consensus 100 -~~~~----~~~~v-~~~~~~~~t~i~v~-~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-~~--~~~~dvF~V~~~~~g~ 169 (441)
+.|. ....+ ......+...|++. .++.+|+++++...|+++|++|..-.... .+ +...-.|.+..
T Consensus 417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----- 491 (587)
T PRK07431 417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----- 491 (587)
T ss_pred ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence 1111 00111 12334566666665 46889999999999999999998775432 12 12333444433
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCcccccccccCCCCcccccccchhcccccchhhhhhhhccccCCCCCCCEEEEEcCCC
Q 013535 170 AIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEK 249 (441)
Q Consensus 170 ~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~l~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~ 249 (441)
+...++...+.+ |..... .-.+.+ ..
T Consensus 492 -----~~~~~~~~~l~~-l~~~~~---------------------------------------------~~~i~~---~~ 517 (587)
T PRK07431 492 -----EDREAAQKVLRE-LAKQLP---------------------------------------------GAEVED---GP 517 (587)
T ss_pred -----HHHHHHHHHHHH-HHHhcC---------------------------------------------CceEEE---eC
Confidence 112222222222 221110 001111 12
Q ss_pred CeEEEEEEec---CCcchHHHHHHHHHhCCceEEEEE
Q 013535 250 DYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGM 283 (441)
Q Consensus 250 ~~t~I~V~~~---DrpGLl~~i~~~L~~~glnI~~A~ 283 (441)
+...|.|.+. .+||+++++..+|++.|++|....
T Consensus 518 ~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 518 AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 4567788775 789999999999999999996543
No 120
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.04 E-value=0.058 Score=39.33 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=43.3
Q ss_pred EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCe-eEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~-~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
+.|.+.|+||++.+|+..|.+++++|.+..+...++. ..-.|.+... +......+.+.|..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 62 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ 62 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 4678999999999999999999999999998876633 2223333222 23455666666654
No 121
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.00 E-value=0.058 Score=41.13 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=38.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 013535 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVI 74 (441)
Q Consensus 28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~ 74 (441)
+.+.+..+|+||.+++++..|+++|+||.+....- ..+...-.|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 57899999999999999999999999999876653 345666556663
No 122
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.00 E-value=0.013 Score=45.32 Aligned_cols=71 Identities=23% Similarity=0.300 Sum_probs=51.2
Q ss_pred EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee--CCe-EEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013535 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (441)
Q Consensus 119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~-~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (441)
|++.|+-||-.|+++|-+|..+|+-|.+|.|.-+ +++ .+-...+.+ ..+..+.......++...+...|.|
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~-e~~~~~~~~~~r~~i~drv~~~lmg 76 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLL-EHDRLKLGGRQRSKVVDRVTKTLMG 76 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeec-CCCccccchHHHHHHHHHHHHHHhc
Confidence 6788999999999999999999999999999753 333 443333333 2344455555567777777777654
No 123
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.98 E-value=0.044 Score=41.25 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=31.8
Q ss_pred EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee
Q 013535 331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI 365 (441)
Q Consensus 331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~ 365 (441)
.+.+...|+||.|++|++.|++++++|.+....+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 47789999999999999999999999998887665
No 124
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.90 E-value=0.011 Score=44.80 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=34.6
Q ss_pred EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEE
Q 013535 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV 375 (441)
Q Consensus 332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v 375 (441)
+-+.+.|+||+|.+|+..|.+.|+||.+....+.++.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 45689999999999999999999999988766555444444443
No 125
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.88 E-value=0.039 Score=42.05 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=37.4
Q ss_pred EEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEc
Q 013535 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVID 75 (441)
Q Consensus 30 v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~ 75 (441)
+.+..+|+||.++++++.|+++|+||.+..... .++...-.|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 567899999999999999999999999887754 4566666666633
No 126
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.86 E-value=0.064 Score=40.13 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=35.3
Q ss_pred EEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEE
Q 013535 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNV 73 (441)
Q Consensus 30 v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~-~g~~~d~f~V 73 (441)
+.+.++|+||.+++++..|+++|+||....... . ++...-.+.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 567899999999999999999999999887765 2 4555544544
No 127
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.85 E-value=0.062 Score=41.28 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=30.3
Q ss_pred EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee
Q 013535 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (441)
Q Consensus 119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~ 152 (441)
+.+.-+|+||-|++++..|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6778899999999999999999999998876554
No 128
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.83 E-value=0.11 Score=40.89 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=39.4
Q ss_pred EEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEe
Q 013535 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (441)
Q Consensus 117 t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~ 164 (441)
+.+.+..+|+||.|+++...|+++|+||.+-...... +...-.|+|.-
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 4567778999999999999999999999999876653 45666788865
No 129
>PRK08577 hypothetical protein; Provisional
Probab=95.82 E-value=0.094 Score=45.88 Aligned_cols=70 Identities=23% Similarity=0.345 Sum_probs=49.0
Q ss_pred cCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 111 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~--~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
.+....+.+.+.+.|+||+|++|+.+|+++|+||.+....+.. +.+.-.|.+.-+ .. +..++.+.+.|.+
T Consensus 51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~--~~----~~~l~~l~~~L~~ 122 (136)
T PRK08577 51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLS--KS----DIDLEELEEELKK 122 (136)
T ss_pred CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeC--Cc----hhhHHHHHHHHHc
Confidence 3445689999999999999999999999999999998877743 333334433321 11 1345666666543
No 130
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.79 E-value=0.012 Score=44.52 Aligned_cols=44 Identities=25% Similarity=0.303 Sum_probs=36.3
Q ss_pred EEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEE
Q 013535 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73 (441)
Q Consensus 30 v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V 73 (441)
+++.+.|+||++++++..|+++|+||......+.+|.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 67899999999999999999999999877655555776655555
No 131
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.71 E-value=0.044 Score=41.42 Aligned_cols=55 Identities=11% Similarity=0.253 Sum_probs=38.7
Q ss_pred CCcchHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHh
Q 013535 125 DRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (441)
Q Consensus 125 DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (441)
|+||.|.+|+++|...|+||.+..+... ++...-.+.+.. + +...+.|.+.|.+.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~------~~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--D------DREIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--C------chhHHHHHHHHhcc
Confidence 7899999999999999999999999883 444444554433 1 23456777777653
No 132
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.64 E-value=0.026 Score=41.99 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=30.9
Q ss_pred EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC
Q 013535 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153 (441)
Q Consensus 119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~ 153 (441)
+.+.-+|+||-|++++.+|+++|+||.+...+...
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 67888999999999999999999999988865543
No 133
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.63 E-value=0.08 Score=40.64 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=30.5
Q ss_pred EEEEeCCccchHHHHHHHHHHCCceEEEEEEEee
Q 013535 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTI 365 (441)
Q Consensus 332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~ 365 (441)
+.+..+|+||-|++++..|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6788999999999999999999999999876554
No 134
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.63 E-value=0.06 Score=40.65 Aligned_cols=56 Identities=18% Similarity=0.385 Sum_probs=37.0
Q ss_pred CccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 338 DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 338 DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
|+||.|.+|+..|...|+||.+..+........-.+.++- .|. +...++|...|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v-~~~---~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV-SGD---DREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE-ES----CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE-eeC---chhHHHHHHHHhc
Confidence 7899999999999999999999999874333222222321 121 2345667777776
No 135
>PRK08577 hypothetical protein; Provisional
Probab=95.61 E-value=0.18 Score=44.07 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=44.2
Q ss_pred EEEEeeCCCC--CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEEE
Q 013535 16 RVVIDNNTCA--DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNVI 74 (441)
Q Consensus 16 ~V~v~~~~~~--~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~-~g~~~d~f~V~ 74 (441)
.+.+.+.... ....+.|.+.|+||++++++++|+++|+||.+....+ . ++.+...|.+.
T Consensus 43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve 105 (136)
T PRK08577 43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD 105 (136)
T ss_pred EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence 4444444333 4678999999999999999999999999999888765 3 45555445553
No 136
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.58 E-value=0.12 Score=37.53 Aligned_cols=60 Identities=25% Similarity=0.402 Sum_probs=42.6
Q ss_pred EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 013535 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (441)
Q Consensus 119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (441)
|.+.+.|+||.+..++..|.+++++|.+..+...+ +.....|.+..+ +...++.+.+.|.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~ 61 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-------DLEHLARIMRKLR 61 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 45778999999999999999999999999887755 334444544431 2334555555543
No 137
>PRK04435 hypothetical protein; Provisional
Probab=95.55 E-value=0.14 Score=45.57 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=52.1
Q ss_pred EeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcc
Q 013535 19 IDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (441)
Q Consensus 19 v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~ 96 (441)
+..........+.+.++|+||++++|+.+++++|+||....... .+|.+--.|.+...+. ...++.|.+.|..
T Consensus 61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~~ 134 (147)
T PRK04435 61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLRN 134 (147)
T ss_pred ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHHc
Confidence 33334456679999999999999999999999999999887765 4576666676644321 1234555555554
No 138
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.43 E-value=0.12 Score=40.09 Aligned_cols=48 Identities=19% Similarity=0.382 Sum_probs=37.3
Q ss_pred EEEeCCccchHHHHHHHHHHCCceEEEEEEEee-CCeeEEEEEEEcCCCC
Q 013535 333 ELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKDTFYVTDVTGN 381 (441)
Q Consensus 333 eV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~-g~~~~d~F~v~d~~g~ 381 (441)
-+...|+||-|++|...|+++|+||.+....-. +....=.|||.- .|.
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~-~~~ 51 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF-EGH 51 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE-ECC
Confidence 345579999999999999999999999976544 345667888843 353
No 139
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.34 E-value=0.065 Score=37.04 Aligned_cols=35 Identities=31% Similarity=0.509 Sum_probs=31.6
Q ss_pred EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC
Q 013535 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 366 (441)
Q Consensus 332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g 366 (441)
|.+.+.|+||++++|+..|.++|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999987654
No 140
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=95.24 E-value=0.75 Score=47.55 Aligned_cols=105 Identities=18% Similarity=0.281 Sum_probs=68.1
Q ss_pred eEEEEEE---ccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535 27 ATVIKVD---SVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS 103 (441)
Q Consensus 27 ~~~v~V~---~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~ 103 (441)
...|+|. ..+++|.++++..+|+++|+||.-..... ... --.|.|...+. ++..+.|.+.+....
T Consensus 260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~-s~~-~Is~~V~~~d~-----~~a~~~L~~~~~~~~----- 327 (401)
T TIGR00656 260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP-SET-SISLTVDETDA-----DEAVRALKDQSGAAG----- 327 (401)
T ss_pred EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC-CCc-eEEEEEeHHHH-----HHHHHHHHHHHHhcC-----
Confidence 4467777 57889999999999999999997443221 121 22466632211 223344444331111
Q ss_pred cceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEE
Q 013535 104 LRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVN 146 (441)
Q Consensus 104 ~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~ 146 (441)
...+ ....+...|.+.|. ++||+++++..+|++.|+||..
T Consensus 328 -~~~i--~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 328 -LDRV--EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred -CceE--EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 0011 22457788888885 7899999999999999999985
No 141
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.20 E-value=0.022 Score=44.14 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=46.9
Q ss_pred EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEE--EEEEcCCCCCCC-hHHHHHHHHHhcc
Q 013535 331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDT--FYVTDVTGNPVD-PKIIDSIRRQIGH 397 (441)
Q Consensus 331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~--F~v~d~~g~~~~-~~~~~~l~~~l~~ 397 (441)
-||+++.-||-.+||+|-+|..+++.|.+|.|.-+ +++..-+ |.+.+. +..++ +....++.+.+..
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~~~~~r~~i~drv~~ 72 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKLGGRQRSKVVDRVTK 72 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-CccccchHHHHHHHHHHHH
Confidence 37899999999999999999999999999999754 5665554 444444 33343 3334555554444
No 142
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.10 E-value=0.098 Score=39.82 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=30.7
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEE
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEIS 363 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~ 363 (441)
..+.+..+|+||.|..+++.|+++|+||.+....
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~ 35 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY 35 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence 4678899999999999999999999999988654
No 143
>PRK07334 threonine dehydratase; Provisional
Probab=95.03 E-value=0.16 Score=52.76 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=51.5
Q ss_pred CCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-----CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-----NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-----~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
.-...|.|.+.||||+|++|+.+|++.++||.+....+. ++.+.-.|.|.- .+.++++++.+.|++
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA 394 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 446899999999999999999999999999999998764 344444454433 245677888888765
No 144
>PRK04435 hypothetical protein; Provisional
Probab=94.98 E-value=0.22 Score=44.28 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=49.2
Q ss_pred CCCCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHH
Q 013535 247 IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERERVIQCLE 319 (441)
Q Consensus 247 ~~~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~ 319 (441)
..+..+.+.+.+.|+||+|++++.+|+..|+||........ +|.+.-.|.|...+. ...++.|.+.|+
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~ 133 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLR 133 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHH
Confidence 44567789999999999999999999999999998876554 465655566543211 125556655554
No 145
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.65 E-value=0.14 Score=35.35 Aligned_cols=35 Identities=37% Similarity=0.615 Sum_probs=31.4
Q ss_pred EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC
Q 013535 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153 (441)
Q Consensus 119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~ 153 (441)
|.+.++|+||++++++.+|+.+|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46789999999999999999999999999987653
No 146
>PRK06635 aspartate kinase; Reviewed
Probab=94.38 E-value=0.95 Score=46.87 Aligned_cols=102 Identities=18% Similarity=0.277 Sum_probs=66.9
Q ss_pred ccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCcceeeeecC
Q 013535 34 SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMP 112 (441)
Q Consensus 34 ~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~~v~~~~ 112 (441)
..++||.++++..+|+++|+||.-...+. .+|..--.|.|...+. ++..+.|.+ +...... ..+ ..
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~~-----~~i--~~ 336 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIGA-----ESV--TY 336 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcCc-----ceE--EE
Confidence 56789999999999999999999654443 3334554566633211 122333333 1111110 011 12
Q ss_pred CCCeEEEEEEe---CCCcchHHHHHHHHHhcCCeEEEEE
Q 013535 113 TEEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAE 148 (441)
Q Consensus 113 ~~~~t~i~v~~---~DrpGLl~~i~~~L~~~g~~I~~A~ 148 (441)
..+...+.+.+ ++.||.++++..+|+++|+||....
T Consensus 337 ~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 337 DDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred cCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 35677888876 6899999999999999999998753
No 147
>PRK06635 aspartate kinase; Reviewed
Probab=94.31 E-value=0.95 Score=46.84 Aligned_cols=103 Identities=16% Similarity=0.229 Sum_probs=67.9
Q ss_pred CeEEEEEE-ecCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH---Hhh
Q 013535 250 DYTVITMR-SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEAA---IER 324 (441)
Q Consensus 250 ~~t~I~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~---L~~ 324 (441)
+...|+|. ..++||.++++..+|++.|+||......... |...-.|.|.. +..+...+.|.+. +.-
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~---------~~~~~a~~~L~~~~~~~~~ 331 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR---------DDLEKALELLEEVKDEIGA 331 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH---------HHHHHHHHHHHHHHHHcCc
Confidence 34445554 5678999999999999999999964333222 24444566542 2333344444442 110
Q ss_pred h----cCCceEEEEEe---CCccchHHHHHHHHHHCCceEEEEE
Q 013535 325 R----ASEGLELELCT---EDRVGLLSDITRIFRENSLSIKRAE 361 (441)
Q Consensus 325 r----~~~~~~ieV~~---~DrpGLL~~It~~l~~~~v~I~~A~ 361 (441)
. ......+.|.+ .|+||++++|.++|++.|+||....
T Consensus 332 ~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 332 ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 0 11245688866 5999999999999999999998853
No 148
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=94.16 E-value=0.22 Score=38.64 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=37.5
Q ss_pred EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCC-eeEEEEEEEcCCC
Q 013535 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGG-KVKDTFYVTDVTG 380 (441)
Q Consensus 332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~-~~~d~F~v~d~~g 380 (441)
+-+...|+||-|+++...|+++|||+.+.+...... ..+=.|||. -+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd-~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVD-CEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEE-EEc
Confidence 445568999999999999999999999988765543 455688884 345
No 149
>PRK07334 threonine dehydratase; Provisional
Probab=94.05 E-value=0.33 Score=50.32 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=48.1
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec-----CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 013535 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-----RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (441)
Q Consensus 251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-----~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~ 320 (441)
.+.|.|.+.||+|+|++|+.+|++.++||.+.+..+. ++.+.-.|.|. +.+.+.++.|...|++
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~------V~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE------TRDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999998765 35544444443 1233466777766654
No 150
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=94.04 E-value=0.2 Score=47.21 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=44.2
Q ss_pred CCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEEEEEEcCCCCCCChHHHH
Q 013535 327 SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIID 389 (441)
Q Consensus 327 ~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~F~v~d~~g~~~~~~~~~ 389 (441)
++.+.+-+.-.||||.+..|+..|.+++|||..+++... |+.+.=..-+ ..+++++.++
T Consensus 146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v----D~~v~~~vl~ 206 (208)
T TIGR00719 146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI----DKNIDDHIKD 206 (208)
T ss_pred CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe----CCCCCHHHHh
Confidence 446788889999999999999999999999999999875 4444433333 4455545444
No 151
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.04 E-value=1.1 Score=46.37 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=67.2
Q ss_pred CCeEEEEEE---ecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh
Q 013535 249 KDYTVITMR---SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR 325 (441)
Q Consensus 249 ~~~t~I~V~---~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r 325 (441)
.+...|+|. ..+++|+++++..+|++.|++|..-...... .--+|.|.. +..+++.+.|.+.+...
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~---------~d~~~a~~~L~~~~~~~ 326 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE---------TDADEAVRALKDQSGAA 326 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH---------HHHHHHHHHHHHHHHhc
Confidence 356678887 6789999999999999999999744221111 222355532 23344444454433111
Q ss_pred -------cCCceEEEEEeC---CccchHHHHHHHHHHCCceEEEE
Q 013535 326 -------ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRA 360 (441)
Q Consensus 326 -------~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A 360 (441)
...-..|.|.+. ++||+++++.++|.+.|+||...
T Consensus 327 ~~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i 371 (401)
T TIGR00656 327 GLDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI 371 (401)
T ss_pred CCceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence 122456677775 79999999999999999999853
No 152
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.00 E-value=0.28 Score=39.82 Aligned_cols=51 Identities=20% Similarity=0.438 Sum_probs=40.2
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC-CeeEEEEEEEcCCCC
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGN 381 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g-~~~~d~F~v~d~~g~ 381 (441)
+.|-+...|+||-|+++-..|+++|||+.+....-.. ..-.=.|||. -+|.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD-ieg~ 66 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN-LDKK 66 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC
Confidence 5566677999999999999999999999999877554 3355588884 3454
No 153
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.89 E-value=0.039 Score=44.18 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=44.3
Q ss_pred EEEEEeCC-CcchHHHHHHHHHhcCCeEEEEEEEee---------CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 118 SIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEIWTH---------NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 118 ~i~v~~~D-rpGLl~~i~~~L~~~g~~I~~A~i~T~---------~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
.|+|.|+| ..|+++.+|.+|+++|+||.+-+-.+. .......|.|+.+ +. + .+.++++|.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~~-~---~~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----PA-D---LEALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----CC-C---HHHHHHHHHH
Confidence 37899999 999999999999999999976554321 1245667777652 22 2 3677777765
No 154
>PRK06291 aspartate kinase; Provisional
Probab=93.73 E-value=2.8 Score=44.39 Aligned_cols=107 Identities=11% Similarity=0.182 Sum_probs=70.5
Q ss_pred eEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535 27 ATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS 103 (441)
Q Consensus 27 ~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~ 103 (441)
...|+|.+. +.+|+.+++.++|+++|+||.-....+... --.|.|...+. ++..+.|.+.+.....
T Consensus 321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~--sIsf~V~~~d~-----~~av~~L~~~~~~~~~---- 389 (465)
T PRK06291 321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSES--NISLVVDEADL-----EKALKALRREFGEGLV---- 389 (465)
T ss_pred EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCc--eEEEEEeHHHH-----HHHHHHHHHHHHHhcC----
Confidence 456777654 689999999999999999998654433221 12355633211 2334555555543110
Q ss_pred cceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEEE
Q 013535 104 LRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE 148 (441)
Q Consensus 104 ~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~ 148 (441)
..+. ...+...|.+.|. +++|+.+++..+|+..|+||..-.
T Consensus 390 --~~i~--~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is 433 (465)
T PRK06291 390 --RDVT--FDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS 433 (465)
T ss_pred --cceE--EeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence 0111 2346778888885 799999999999999999998444
No 155
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.44 E-value=0.051 Score=43.52 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=41.8
Q ss_pred EEEEEeCC-ccchHHHHHHHHHHCCceEEEEEEEe-----eC----CeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 331 ELELCTED-RVGLLSDITRIFRENSLSIKRAEIST-----IG----GKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 331 ~ieV~~~D-rpGLL~~It~~l~~~~v~I~~A~i~T-----~g----~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
+|+|.+.| ++|++++||++|+++|+||...+--+ .+ ....-.|.++ |.+. ..+.|+++|.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~---~~~~---~~~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR---GQPA---DLEALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe---CCCC---CHHHHHHHHHH
Confidence 47899999 99999999999999999997655421 11 2344466664 3332 34566666654
No 156
>PRK08210 aspartate kinase I; Reviewed
Probab=93.30 E-value=2.8 Score=43.42 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=65.6
Q ss_pred CeEEEEEEccCC-CcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCc
Q 013535 26 DATVIKVDSVNK-HGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL 104 (441)
Q Consensus 26 ~~~~v~V~~~Dr-pGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~ 104 (441)
+...|+|...+. +|.+++++..|+++|+||.-...+.. . -.|.+... ..+.+.+.|.... .
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~--~--is~~v~~~---------~~~~a~~~l~~~~-----~ 331 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT--E--VVFTVSDE---------DSEKAKEILENLG-----L 331 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc--e--EEEEEcHH---------HHHHHHHHHHHhC-----C
Confidence 345667766555 99999999999999999996644322 1 23555321 1122233333321 0
Q ss_pred ceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEE
Q 013535 105 RSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVN 146 (441)
Q Consensus 105 ~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~ 146 (441)
.+. ...+...|.|.|. ++||+++++..+|++.|+||..
T Consensus 332 --~v~--~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 332 --KPS--VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred --cEE--EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 111 1346777888875 8999999999999999999974
No 157
>PRK11899 prephenate dehydratase; Provisional
Probab=93.28 E-value=0.37 Score=47.52 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=43.7
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC-CeeEEEEEEEcCCCCCCCh
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGNPVDP 385 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g-~~~~d~F~v~d~~g~~~~~ 385 (441)
.+.|-+...|+||.|+++...|+++|||+.+....-.+ ....=.||| |..|..-++
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d~ 250 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPEDR 250 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCCH
Confidence 45566666899999999999999999999999987554 446668888 555765443
No 158
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.27 E-value=0.51 Score=35.82 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=27.3
Q ss_pred EEEEecCCcchHHHHHHHHHhCCceEEEEEEEe
Q 013535 254 ITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNT 286 (441)
Q Consensus 254 I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t 286 (441)
+.|.-|||||-|.+++..++. |.||..-+-..
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~ 32 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRN 32 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc
Confidence 357889999999999999999 99998765544
No 159
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.26 E-value=0.53 Score=35.72 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=39.9
Q ss_pred EEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 120 EFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 120 ~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
.+.-+|+||-|..++.+++. |.||...+=.-.+.....++..-. ..+++..+++.+.|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie------~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQ------VPDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 56789999999999999999 999987754432212222222212 1135677888887765
No 160
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.23 E-value=0.55 Score=52.27 Aligned_cols=64 Identities=23% Similarity=0.223 Sum_probs=48.9
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 013535 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG--RTEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (441)
Q Consensus 251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~ 320 (441)
.+.|.|.+.||+|+|++|+.+++..++||.+.++.+. ++.+.-.|.|. +.+-..++.|...|..
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie------V~~~~~L~~l~~~L~~ 731 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE------IYNLQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE------ECCHHHHHHHHHHHhc
Confidence 4588999999999999999999999999999999875 46655555543 2233466777666653
No 161
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.19 E-value=0.5 Score=52.54 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=50.8
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
-...|.|.+.||+|+|++|+.+++..++||.+..+.+. ++.+...|.|.- .+.+++.+|.+.|..
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~~ 731 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLNQ 731 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHhc
Confidence 45688999999999999999999999999999998775 355555555543 245677888777654
No 162
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.03 E-value=1.1 Score=34.51 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=43.4
Q ss_pred EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
+.+..+|+||-|+++..+|+++|+||.+-...... ....-.|+|.- .+. . ++...+.+...|.+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~--~~~-~-~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF--EGH-I-DDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ECC-C-CCHHHHHHHHHHHH
Confidence 34455899999999999999999999998766543 35666777765 232 2 23344555555543
No 163
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.96 E-value=0.51 Score=36.82 Aligned_cols=50 Identities=14% Similarity=0.239 Sum_probs=38.8
Q ss_pred EEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC-CeeEEEEEEEcCCCCC
Q 013535 332 LELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGNP 382 (441)
Q Consensus 332 ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g-~~~~d~F~v~d~~g~~ 382 (441)
+-+...|+||-|+++-..|+.+|+|+.+.+..... ...+=.|||. -+|..
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id-~e~~~ 53 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVD-CECDQ 53 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcCH
Confidence 44556899999999999999999999999877653 4456688884 34543
No 164
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.33 E-value=0.74 Score=51.15 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=50.5
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
-...|.|.+.||+|+|++|+.+++..++||.+..+.+.+ +.+...|.+.- .+.+++.+|-..|..
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIRV 690 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence 466889999999999999999999999999999987764 44455555543 235677777777653
No 165
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=92.24 E-value=0.48 Score=42.54 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=37.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCC-EEEEEEEE
Q 013535 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGG-WFMDVFNV 73 (441)
Q Consensus 29 ~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g-~~~d~f~V 73 (441)
-+.+.+.|+||.+.++++.++++|.||..|+.+. .+| ..+.-|.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi 50 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI 50 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence 4778899999999999999999999999999987 445 45533444
No 166
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.08 E-value=1 Score=50.07 Aligned_cols=65 Identities=3% Similarity=-0.042 Sum_probs=48.7
Q ss_pred CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 013535 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (441)
Q Consensus 250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~ 320 (441)
..+.|.|.+.||+|+|++|+.+++..++||.+.+..+.+ +.+.-.|.|. +.+-..++.|...|..
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT------ARDRVHLANIMRKIRV 690 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE------ECCHHHHHHHHHHHhC
Confidence 345888999999999999999999999999999987765 4544444443 2223467777666653
No 167
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=91.94 E-value=0.18 Score=44.87 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=43.1
Q ss_pred ChHHHHHHHhcCCC--EEEEeeCCCCCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEE
Q 013535 2 DDEYAKLIRRMNPP--RVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS 61 (441)
Q Consensus 2 ~~~~~~~~~~~~~~--~V~v~~~~~~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~ 61 (441)
||++-.+.++..+- ...+....+-+..++.....+.||+++.+++.++++||+|.++-..
T Consensus 68 d~~L~~if~nl~P~a~l~~vA~~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~ 129 (167)
T COG2150 68 DEELRRIFENLEPVASLADVAPLLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISE 129 (167)
T ss_pred CHHHHHHHHhccchhhHHHHHHhcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence 56666667766652 2234344445556666767889999999999999999999977543
No 168
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=91.93 E-value=0.61 Score=48.14 Aligned_cols=56 Identities=23% Similarity=0.383 Sum_probs=43.9
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEe-eCCeeEEEEEEEcCCCCCCCh
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEIST-IGGKVKDTFYVTDVTGNPVDP 385 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T-~g~~~~d~F~v~d~~g~~~~~ 385 (441)
.+.+-+...|+||.|+++-..|+.+|||+.+....- .+...+=.||| |..|..-++
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d~ 353 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRSA 353 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCCH
Confidence 455556678999999999999999999999999874 45557778988 555765443
No 169
>PRK06291 aspartate kinase; Provisional
Probab=91.84 E-value=7.9 Score=40.99 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=68.6
Q ss_pred CCeEEEEEEec---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013535 249 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER- 324 (441)
Q Consensus 249 ~~~t~I~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~- 324 (441)
++...|+|.+. +.+|+++++..+|++.|++|......+.. .--.|.|.. ...++....|.+.+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~---------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDE---------ADLEKALKALRREFGEG 387 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeH---------HHHHHHHHHHHHHHHHh
Confidence 45667888764 68999999999999999999764332222 222355443 2233334445444332
Q ss_pred h------cCCceEEEEEeC---CccchHHHHHHHHHHCCceEEEEE
Q 013535 325 R------ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAE 361 (441)
Q Consensus 325 r------~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A~ 361 (441)
. ...-.+|.|.+. +++|++.++..+|.+.|+||.-..
T Consensus 388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is 433 (465)
T PRK06291 388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS 433 (465)
T ss_pred cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence 1 122457888876 799999999999999999998544
No 170
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.56 E-value=0.38 Score=50.02 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=48.1
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHH
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIR 392 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~ 392 (441)
++.|-+.-.|+||.++.|+..|+++|+||.+.+..+.|+.+.-+|-+ ++ +++++.+++|+
T Consensus 338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~ 397 (409)
T PRK11790 338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALK 397 (409)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHH
Confidence 47888899999999999999999999999999999889666665544 33 44555556665
No 171
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.50 E-value=2.2 Score=34.62 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=49.4
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (441)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (441)
..+.+.+..+|+||-|+++-..|+.+|+|+..-..... +....=.|||.- .|. . + ..+..+-..|.+.|.
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~-~-~-~~~~~~l~~L~~~~~ 83 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK-S-A-PALDPIIKSLRNDIG 83 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC-C-C-HHHHHHHHHHHHHhC
Confidence 45677777799999999999999999999998887664 344667888865 343 2 2 344444455555443
No 172
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=91.48 E-value=1 Score=49.97 Aligned_cols=65 Identities=22% Similarity=0.230 Sum_probs=50.3
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
-.+.|.|.+.||+|+|++|+.+++..++||.+..+.+.. +.+...|.|.- .+..++.+|-..|..
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIKT 674 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence 467889999999999999999999999999999988763 44444454433 235677777777654
No 173
>PRK09034 aspartate kinase; Reviewed
Probab=91.36 E-value=7.2 Score=41.17 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=68.6
Q ss_pred eEEEEEEc---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535 27 ATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS 103 (441)
Q Consensus 27 ~~~v~V~~---~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~ 103 (441)
.+.|++.+ ++++|+.+++...|+++|+||.-. +.+. .--.|.|...+-. ...+..+.+.|......
T Consensus 308 i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~-~sis~~v~~~~~~----~a~~~~l~~el~~~~~~--- 376 (454)
T PRK09034 308 FTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGI-DDLSIIIRERQLT----PKKEDEILAEIKQELNP--- 376 (454)
T ss_pred EEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCC-cEEEEEEeHHHhh----HHHHHHHHHHHHHhhCC---
Confidence 34556653 678999999999999999999854 2222 2234666443211 01112333333322210
Q ss_pred cceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535 104 LRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWT 151 (441)
Q Consensus 104 ~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~i~T 151 (441)
..+. ...+...|.+.|. +.||+++++..+|+++|+||......+
T Consensus 377 --~~I~--~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 377 --DELE--IEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred --ceEE--EeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 0111 2357788888763 789999999999999999998765433
No 174
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=91.30 E-value=1.5 Score=48.81 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=47.8
Q ss_pred CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEccCCCCCCCHHHHHHHHHHHH
Q 013535 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLE 319 (441)
Q Consensus 250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~ 319 (441)
..+.|.|.+.||+|+|++|+.+++..+.||.+.++.+.. +.+.-.|.|. +.+-..+..|...|.
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~ii~~L~ 673 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE------IKNYKHLLKIMLKIK 673 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE------ECCHHHHHHHHHHHh
Confidence 345889999999999999999999999999999998774 5544344442 223346666666664
No 175
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=91.19 E-value=0.82 Score=44.87 Aligned_cols=55 Identities=18% Similarity=0.366 Sum_probs=44.6
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee-CCeeEEEEEEEcCCCCCCC
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKDTFYVTDVTGNPVD 384 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~-g~~~~d~F~v~d~~g~~~~ 384 (441)
.+.+-+..+|+||-|+++-..|+.+|||+.+....-. +....=.||| |-.|..-+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~ 249 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDD 249 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCc
Confidence 5777788889999999999999999999999998754 4556668888 55566544
No 176
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=90.94 E-value=0.95 Score=34.20 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=35.8
Q ss_pred CCeEEEEEEeC----CCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEe
Q 013535 114 EEHTSIEFTGT----DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (441)
Q Consensus 114 ~~~t~i~v~~~----DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~ 164 (441)
.+...|+|.++ |.||+++.+...|++.|+||.... | ...+.+.|..
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~ 53 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE 53 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence 45677888887 799999999999999999998877 4 2356666654
No 177
>PRK08210 aspartate kinase I; Reviewed
Probab=90.78 E-value=3.4 Score=42.80 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=65.4
Q ss_pred CCeEEEEEEecCC-cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--h
Q 013535 249 KDYTVITMRSKDR-PKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--R 325 (441)
Q Consensus 249 ~~~t~I~V~~~Dr-pGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~--r 325 (441)
.+...|+|...+. +|.++++...|++.|+||...... ... -+|.+.. +..+++.+.|.+. .. .
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~--~~~--is~~v~~---------~~~~~a~~~l~~~-~~~v~ 334 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF--PTE--VVFTVSD---------EDSEKAKEILENL-GLKPS 334 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec--Cce--EEEEEcH---------HHHHHHHHHHHHh-CCcEE
Confidence 3556777776665 999999999999999999876333 222 2355432 2333444444431 10 0
Q ss_pred -cCCceEEEEEeC---CccchHHHHHHHHHHCCceEEE
Q 013535 326 -ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKR 359 (441)
Q Consensus 326 -~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~ 359 (441)
...-..|.|.+. ++||++.++.++|.+.|+||..
T Consensus 335 ~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 335 VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 122456777775 8999999999999999999974
No 178
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=90.61 E-value=15 Score=38.69 Aligned_cols=108 Identities=16% Similarity=0.211 Sum_probs=70.3
Q ss_pred CCeEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCC
Q 013535 25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA 101 (441)
Q Consensus 25 ~~~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~ 101 (441)
.+...|+|.+. +++|..+++.+.|+++|+||.--........ ..|.+...+. +...+.|++.......
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-- 375 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-- 375 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence 34556666643 3459999999999999999974433322222 4577643321 2344455544433221
Q ss_pred CCcceeeeecCCCCeEEEEEEe---CCCcchHHHHHHHHHhcCCeEEEEE
Q 013535 102 PSLRSSVGVMPTEEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAE 148 (441)
Q Consensus 102 ~~~~~~v~~~~~~~~t~i~v~~---~DrpGLl~~i~~~L~~~g~~I~~A~ 148 (441)
++. ...+...|.++| ...||..+++..+|++.|+||....
T Consensus 376 -----~v~--~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 376 -----EVE--VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred -----eEE--eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 112 234666777776 4778999999999999999999887
No 179
>PRK09034 aspartate kinase; Reviewed
Probab=90.60 E-value=13 Score=39.27 Aligned_cols=108 Identities=14% Similarity=0.196 Sum_probs=68.0
Q ss_pred CCeEEEEEEe---cCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh
Q 013535 249 KDYTVITMRS---KDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR 325 (441)
Q Consensus 249 ~~~t~I~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r 325 (441)
.+.+.|++.. .+++|+++++...|+++|+||.-. + .+..--+|.|.+.+ +.. ..+..+.+.|...+...
T Consensus 306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~-ss~~sis~~v~~~~---~~~-a~~~~l~~el~~~~~~~ 377 (454)
T PRK09034 306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---P-SGIDDLSIIIRERQ---LTP-KKEDEILAEIKQELNPD 377 (454)
T ss_pred CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---c-CCCcEEEEEEeHHH---hhH-HHHHHHHHHHHHhhCCc
Confidence 3456777764 678999999999999999999874 2 22222346665421 000 01123333333222100
Q ss_pred ----cCCceEEEEEeC---CccchHHHHHHHHHHCCceEEEEEEEe
Q 013535 326 ----ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEIST 364 (441)
Q Consensus 326 ----~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A~i~T 364 (441)
...-..|.+.+. ++||+++++..+|.+.|+||....-.+
T Consensus 378 ~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 378 ELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred eEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 012457888653 889999999999999999998775433
No 180
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=90.39 E-value=1.7 Score=40.85 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=39.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 013535 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV 73 (441)
Q Consensus 27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V 73 (441)
...+.+.-.|+||...+++..|.++|+||...++.. .+|.++-+..|
T Consensus 148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 345566679999999999999999999999999986 56788865555
No 181
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.37 E-value=0.72 Score=39.23 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=41.2
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCe-eEEEEEEEcCCCCC
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-VKDTFYVTDVTGNP 382 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~-~~d~F~v~d~~g~~ 382 (441)
.+.+-+...|+||-|++|-..|+.+|||+.+.+....... ..=.||| |.+|..
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~ 94 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR 94 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence 4566667799999999999999999999999987766544 4457878 434543
No 182
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=90.29 E-value=13 Score=42.44 Aligned_cols=113 Identities=16% Similarity=0.220 Sum_probs=72.5
Q ss_pred CeEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCC
Q 013535 26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (441)
Q Consensus 26 ~~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~ 102 (441)
+...|+|.+. +++|+.+++..+|+++|+||.-....+ +... ..|.|...+. ++..+.|.+.+.......
T Consensus 314 dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~s-Isf~V~~~d~-----~~av~~L~~~f~~el~~~- 385 (819)
T PRK09436 314 NMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEYS-ISFCVPQSDA-----AKAKRALEEEFALELKEG- 385 (819)
T ss_pred CEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCce-EEEEEeHHHH-----HHHHHHHHHHHHHHhccC-
Confidence 4557788754 679999999999999999997554332 2222 2466644221 223444555443222100
Q ss_pred CcceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEEEE
Q 013535 103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEI 149 (441)
Q Consensus 103 ~~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~i 149 (441)
....+ ....+...|.+.|. ++||+++++..+|.+.|+||+...-
T Consensus 386 -~~~~i--~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isq 432 (819)
T PRK09436 386 -LLEPL--EVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQ 432 (819)
T ss_pred -CcceE--EEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 00011 22357888888886 7899999999999999999986543
No 183
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=90.00 E-value=1.5 Score=48.24 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=48.0
Q ss_pred CCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHH
Q 013535 249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEA 320 (441)
Q Consensus 249 ~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~ 320 (441)
...+.|.|.+.||+|+|.+++.+|+..+.||......+.++ .+.-.|.+. +.+-..+..|...|..
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~l~~ 691 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLARLKQ 691 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHHHhc
Confidence 45578999999999999999999999999999999888644 333333332 2223456666666643
No 184
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=89.89 E-value=1.3 Score=39.76 Aligned_cols=47 Identities=15% Similarity=0.421 Sum_probs=37.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCC--eEEEEEEEEe
Q 013535 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND--RAAAVVHVTD 164 (441)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~--~~~dvF~V~~ 164 (441)
-+.+.+.++||.|.++++.++++|.||..|+.+..++ ...-.|.+.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg 52 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG 52 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence 3678899999999999999999999999999887543 4555555533
No 185
>PRK06382 threonine dehydratase; Provisional
Probab=89.49 E-value=2.1 Score=44.51 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=50.1
Q ss_pred CCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-----eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 112 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-----HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 112 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-----~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
.....+.+.|.-+|+||-|++++.+|.++|+||.+..... ..+...-+|.|... +++..+.|.+.|.+
T Consensus 326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE 398 (406)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999998876541 13445556666441 24455677777765
No 186
>PLN02551 aspartokinase
Probab=89.17 E-value=21 Score=38.41 Aligned_cols=113 Identities=13% Similarity=0.143 Sum_probs=68.4
Q ss_pred CeEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCC
Q 013535 26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (441)
Q Consensus 26 ~~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~ 102 (441)
+.+.|+|.+. +.+|.++++...|+++|++|.-.. +.. .-..|.+...+... .+.+.+.+.+.+.+...+
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe--~sIs~~v~~~~~~~--~~~i~~~l~~l~~el~~~-- 436 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSE--VSISLTLDPSKLWS--RELIQQELDHLVEELEKI-- 436 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccC--CEEEEEEehhHhhh--hhhHHHHHHHHHHHhhcC--
Confidence 3456777654 689999999999999999998542 222 12246664332110 011111222222221110
Q ss_pred CcceeeeecCCCCeEEEEEEeC--CCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535 103 SLRSSVGVMPTEEHTSIEFTGT--DRPGLFSEVCAVLADLHCNVVNAEIWT 151 (441)
Q Consensus 103 ~~~~~v~~~~~~~~t~i~v~~~--DrpGLl~~i~~~L~~~g~~I~~A~i~T 151 (441)
..+. ...+...|.|+|. ..||+++++-.+|+..|+||......+
T Consensus 437 ---~~V~--v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga 482 (521)
T PLN02551 437 ---AVVN--LLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA 482 (521)
T ss_pred ---CeEE--EeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence 1122 2357777888864 689999999999999999998765433
No 187
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.99 E-value=0.81 Score=47.63 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=42.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEE
Q 013535 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73 (441)
Q Consensus 26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V 73 (441)
....|.+.-+|+||.+++|+.+|+++|+||..-+..+.++.++-+|.+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~ 384 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV 384 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence 556888899999999999999999999999988888888888866655
No 188
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=88.98 E-value=1.9 Score=47.56 Aligned_cols=67 Identities=25% Similarity=0.327 Sum_probs=49.9
Q ss_pred CCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCe-EEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 113 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~-~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
..-...|.|.+.||+|+|++|+.+|+..++||.+....+..++ +.-.|.+.- .+-.++.+|-..|..
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v-------~n~~~L~~i~~~l~~ 691 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV-------KNLNHLGRVLARLKQ 691 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE-------CcHHHHHHHHHHHhc
Confidence 4567889999999999999999999999999999998886433 333343322 234567777666643
No 189
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=88.89 E-value=3 Score=32.26 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=36.7
Q ss_pred EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEe
Q 013535 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (441)
Q Consensus 119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~ 164 (441)
+.+..+|+||-|+++-..|+.+|+|+..-...... ....=.|+|.-
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 44555899999999999999999999988776643 44666788765
No 190
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=88.88 E-value=15 Score=41.79 Aligned_cols=102 Identities=7% Similarity=0.101 Sum_probs=68.9
Q ss_pred CCeEEEEEEec---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013535 249 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER- 324 (441)
Q Consensus 249 ~~~t~I~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~- 324 (441)
.+.+.|+|.+. ++||+++++..+|++.|++|......+ .+ .--+|.|.. ...+.....|.+.+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se-~sIsf~V~~---------~d~~~av~~L~~~f~~e 381 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SE-YSISFCVPQ---------SDAAKAKRALEEEFALE 381 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CC-ceEEEEEeH---------HHHHHHHHHHHHHHHHH
Confidence 46678888765 689999999999999999996543332 22 222455543 2333334444443321
Q ss_pred ----hc------CCceEEEEEeC---CccchHHHHHHHHHHCCceEEEEE
Q 013535 325 ----RA------SEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAE 361 (441)
Q Consensus 325 ----r~------~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A~ 361 (441)
.. ..-.+|.|.+. ++||++.++..+|.+.|+||....
T Consensus 382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 11 22457888876 789999999999999999998664
No 191
>PRK06349 homoserine dehydrogenase; Provisional
Probab=88.57 E-value=1.8 Score=45.37 Aligned_cols=65 Identities=28% Similarity=0.349 Sum_probs=47.0
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
.|.|.+...|+||.|++|+.+|.++++||.+..-....+.....+++++.. +...+.++.++|.+
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L~~ 412 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAIEA 412 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHHhc
Confidence 578999999999999999999999999999887554333455677776542 23344444455544
No 192
>PRK08818 prephenate dehydrogenase; Provisional
Probab=88.47 E-value=0.99 Score=46.32 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=38.2
Q ss_pred ceEEEEEeC-CccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcC
Q 013535 329 GLELELCTE-DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDV 378 (441)
Q Consensus 329 ~~~ieV~~~-DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~ 378 (441)
.+.+.+.-+ |+||.|++|+..|+.+||||.+.++ .......-.|||.-.
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~ 344 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE 344 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence 456777776 9999999999999999999999999 333333334998544
No 193
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.42 E-value=3.1 Score=42.39 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=41.7
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEc
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD 377 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d 377 (441)
.+.|.|.-+||||-|+.|+..|.+.||||.+.+|.-..+....++.++.
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~ 338 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF 338 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence 4789999999999999999999999999999999766666555665543
No 194
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=88.07 E-value=8.4 Score=40.43 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=66.5
Q ss_pred CeEEEEEEccCC--CcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 013535 26 DATVIKVDSVNK--HGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS 103 (441)
Q Consensus 26 ~~~~v~V~~~Dr--pGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~ 103 (441)
+...|+|.+.+- +|.++++...|+++|+||.-....+.. .. ..|.|...+. ++..+.|.. +.....
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~~-----~~a~~~L~~-~~~~~~---- 368 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKEDA-----DQAKTLLKS-ELNLSA---- 368 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHHH-----HHHHHHHHH-HHHhcC----
Confidence 344566665333 799999999999999999865433322 11 2456643221 112222222 111110
Q ss_pred cceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEEE
Q 013535 104 LRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE 148 (441)
Q Consensus 104 ~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~ 148 (441)
...+ ....+...|.+.|. +.||+++++..+|+..|+||....
T Consensus 369 -~~~I--~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 369 -LSSV--EVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred -cceE--EEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 0112 23457788888764 789999999999999999997765
No 195
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.90 E-value=4 Score=32.44 Aligned_cols=30 Identities=7% Similarity=0.027 Sum_probs=24.7
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCceEEEEEE
Q 013535 253 VITMRSKDRPKLLFDIVCTLTDMQYVVFHGMV 284 (441)
Q Consensus 253 ~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i 284 (441)
++.|.-||+||=|.+++.+|+ +.||.+..-
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y 32 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNY 32 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEE
Confidence 578899999999999999999 667765433
No 196
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=87.66 E-value=2.3 Score=32.07 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=28.8
Q ss_pred CeEEEEEEec----CCcchHHHHHHHHHhCCceEEEEE
Q 013535 250 DYTVITMRSK----DRPKLLFDIVCTLTDMQYVVFHGM 283 (441)
Q Consensus 250 ~~t~I~V~~~----DrpGLl~~i~~~L~~~glnI~~A~ 283 (441)
+...|+|.++ |.||+.++++..|++.|+||....
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 4567888888 799999999999999999997655
No 197
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.41 E-value=4.5 Score=32.10 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=37.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCC-HHHHHHHHHHHHH
Q 013535 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKD-PKRLSTIKELLFN 186 (441)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-~~~~~~dvF~V~~~~~g~~~~~-~~~~~~l~~~L~~ 186 (441)
++.+.-+|+||-|++++.+|+ +.||....-.. ..+.+.-.+.+.. .+ ++..+++.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~-------~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSV-------ANGAEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEe-------CCcHHHHHHHHHHHHH
Confidence 467888999999999999999 55665333322 2233333333332 13 4566788777765
No 198
>PRK06545 prephenate dehydrogenase; Validated
Probab=87.32 E-value=2.2 Score=43.48 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=42.9
Q ss_pred CCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEe
Q 013535 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (441)
Q Consensus 113 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~ 164 (441)
-...+.+.|.-+|+||-++.++..|...|+||.+.+|.-..+....++.++-
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~ 338 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF 338 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence 3578999999999999999999999999999999999765555555555544
No 199
>PRK11899 prephenate dehydratase; Provisional
Probab=87.05 E-value=4.1 Score=40.15 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=41.3
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEe
Q 013535 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTD 164 (441)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~ 164 (441)
.|.|.+..+|+||.|+++-.+|+.+|+|+.+-..... ++.+.=.|||.-
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~ 243 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI 243 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence 5777777799999999999999999999999888765 445667888866
No 200
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=86.99 E-value=1.8 Score=38.97 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=48.3
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEE-eeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcccccccccc
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEIS-TIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRS 405 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~-T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~~~~~~~ 405 (441)
.++.+.-.|.||.|.+++..|++.|+||.+..+. |..+....+=.++.. ++...+++.+.|.+ +.++.++
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-----~~~~~EQi~kQL~k-LidV~kV 75 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-----DEQVLEQIIKQLNK-LIDVLKV 75 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-----CcchHHHHHHHHHh-hccceeE
Confidence 4677888899999999999999999999999986 443334444444332 23456667666665 4444333
No 201
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=86.94 E-value=2.4 Score=38.18 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=47.1
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (441)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (441)
...+.+.-.|.||.|+++++.|++.|+||.+-.+......-..-..+.- .| |+...+++...|.+...
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv--~g----~~~~~EQi~kQL~kLid 71 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV--SG----DEQVLEQIIKQLNKLID 71 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE--cC----CcchHHHHHHHHHhhcc
Confidence 4567788899999999999999999999999988754322232222222 12 23456788888776544
No 202
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=86.83 E-value=17 Score=38.16 Aligned_cols=102 Identities=14% Similarity=0.174 Sum_probs=64.5
Q ss_pred CCeEEEEEEecCC--cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhc
Q 013535 249 KDYTVITMRSKDR--PKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA 326 (441)
Q Consensus 249 ~~~t~I~V~~~Dr--pGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~ 326 (441)
.+...|+|.+.+- +|+++++..+|++.|++|......+. + .--.|.|... ..++..+.|........
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s-e-~sIs~~I~~~---------~~~~a~~~L~~~~~~~~ 368 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS-E-TSISFTVDKE---------DADQAKTLLKSELNLSA 368 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-C-ceEEEEEEHH---------HHHHHHHHHHHHHHhcC
Confidence 3456677766443 79999999999999999976542222 2 1123554431 22222222322111111
Q ss_pred -------CCceEEEEEeC---CccchHHHHHHHHHHCCceEEEEE
Q 013535 327 -------SEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAE 361 (441)
Q Consensus 327 -------~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A~ 361 (441)
..-..|.|.+. ++||++++|.++|++.|+||....
T Consensus 369 ~~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 369 LSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred cceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 22457888653 889999999999999999998775
No 203
>PRK14630 hypothetical protein; Provisional
Probab=86.73 E-value=6.2 Score=34.91 Aligned_cols=87 Identities=10% Similarity=0.027 Sum_probs=59.2
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhcCCceEEEEEeC-
Q 013535 260 DRPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTE- 337 (441)
Q Consensus 260 DrpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~~~~~~ieV~~~- 337 (441)
|..-+-..+..++..+|+.+.+......++ +.+ .+++....|-. -+.++.+-+.+...|....+..|.+||+++
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~gV~---idDC~~vSr~i~~~ld~~i~~~Y~LEVSSPG 81 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKI-QIVLYKKDSFG---VDTLCDLHKMILLILEAVLKYNFSLEISTPG 81 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCCCC---HHHHHHHHHHHHHHhcccCCCCeEEEEeCCC
Confidence 444556677888999999999999887654 555 44444444522 357888888887777665577999999975
Q ss_pred -CccchHHHHHHHHHH
Q 013535 338 -DRVGLLSDITRIFRE 352 (441)
Q Consensus 338 -DrpGLL~~It~~l~~ 352 (441)
||| |.....+-.-
T Consensus 82 ldRp--L~~~~df~r~ 95 (143)
T PRK14630 82 INRK--IKSDREFKIF 95 (143)
T ss_pred CCCc--CCCHHHHHHh
Confidence 555 3333333333
No 204
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=86.03 E-value=1.6 Score=41.75 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=33.8
Q ss_pred CCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (441)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T 151 (441)
....+|.+.-.|-||.+++|+++|+..|.||.+.-+--
T Consensus 75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~ 112 (309)
T KOG2663|consen 75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL 112 (309)
T ss_pred ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence 35678888899999999999999999999999987754
No 205
>PRK09181 aspartate kinase; Validated
Probab=85.93 E-value=14 Score=39.32 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=68.9
Q ss_pred CCeEEEEEEec---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh-
Q 013535 249 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER- 324 (441)
Q Consensus 249 ~~~t~I~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~- 324 (441)
.+.+.|+|.+. +.+|+.+++...|++.|++|. .+.+.. .--+|.|.+. ...++++.+.|.+.+..
T Consensus 327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~-------~~~~~~~~~~L~~~~~~~ 395 (475)
T PRK09181 327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS-------LKTLKRVIAELEKRYPNA 395 (475)
T ss_pred CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC-------hHHHHHHHHHHHHhcCCc
Confidence 35677788544 789999999999999999997 233332 2223555431 12344555555543321
Q ss_pred h--cCCceEEEEEeCC--ccchHHHHHHHHHHCCceEEEEE
Q 013535 325 R--ASEGLELELCTED--RVGLLSDITRIFRENSLSIKRAE 361 (441)
Q Consensus 325 r--~~~~~~ieV~~~D--rpGLL~~It~~l~~~~v~I~~A~ 361 (441)
. ...-.+|.|.+.. +||+.+++..+|.+.||||....
T Consensus 396 ~i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~ 436 (475)
T PRK09181 396 EVTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH 436 (475)
T ss_pred eEEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence 0 1335678887764 89999999999999999998765
No 206
>PRK09181 aspartate kinase; Validated
Probab=85.88 E-value=9.9 Score=40.41 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=66.4
Q ss_pred CeEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCC
Q 013535 26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (441)
Q Consensus 26 ~~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~ 102 (441)
+.+.|+|.+. +.+|+.+++.+.|+++|+||. -+.+.. .-..|.+... . . ..+.+.+.|......
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~--~----~-~~~~~~~~L~~~~~~-- 394 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS--L----K-TLKRVIAELEKRYPN-- 394 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC--h----H-HHHHHHHHHHHhcCC--
Confidence 4556676543 689999999999999999998 222322 1224555332 1 1 112223333322210
Q ss_pred CcceeeeecCCCCeEEEEEEeCC--CcchHHHHHHHHHhcCCeEEEEEE
Q 013535 103 SLRSSVGVMPTEEHTSIEFTGTD--RPGLFSEVCAVLADLHCNVVNAEI 149 (441)
Q Consensus 103 ~~~~~v~~~~~~~~t~i~v~~~D--rpGLl~~i~~~L~~~g~~I~~A~i 149 (441)
..+. ..+...|.++|.. +||+.+++..+|++.|+||..-..
T Consensus 395 ---~~i~---~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q 437 (475)
T PRK09181 395 ---AEVT---VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ 437 (475)
T ss_pred ---ceEE---ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence 0122 2567888888854 899999999999999999976543
No 207
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.60 E-value=7.7 Score=30.14 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=37.1
Q ss_pred EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEe
Q 013535 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTD 164 (441)
Q Consensus 119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~ 164 (441)
+.+..+|+||-|+++-..|+.+|+|+..-..... +..+.=.|||.-
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 4455589999999999999999999998887664 345667788865
No 208
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.44 E-value=2.1 Score=46.14 Aligned_cols=61 Identities=21% Similarity=0.462 Sum_probs=44.9
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEEEEEEcCCCCCCChHHHHHHHH
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRR 393 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~F~v~d~~g~~~~~~~~~~l~~ 393 (441)
.+.+=+.-.|+||.+..|+..|.+++|||...++... |+.+.=++-+ ..+++++.+++|++
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~----D~~v~~~~l~~i~~ 514 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV----DDPVPEEVLEELRA 514 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC----CCCCCHHHHHHHhc
Confidence 4566667799999999999999999999999998764 3444433433 44566666677664
No 209
>PRK14646 hypothetical protein; Provisional
Probab=85.14 E-value=11 Score=33.88 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=61.3
Q ss_pred chHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--hcCCceEEEEEeC--
Q 013535 263 KLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTE-- 337 (441)
Q Consensus 263 GLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~--r~~~~~~ieV~~~-- 337 (441)
-+...+..++..+|+.+.+......++ +++ ..+|..++|..++ -+.++.+-..|.+.|.. ..+..|.+||+++
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~L-rV~IDk~~g~gVt-ldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGl 85 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVI-KIIIKKTNGDDIS-LDDCALFNTPASEEIENSNLLNCSYVLEISSQGV 85 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEE-EEEEECCCCCCcc-HHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCC
Confidence 355667788999999999999998865 555 4444443343333 35788888888888863 4568999999975
Q ss_pred CccchHHHHHHHHHHCCce
Q 013535 338 DRVGLLSDITRIFRENSLS 356 (441)
Q Consensus 338 DrpGLL~~It~~l~~~~v~ 356 (441)
||| |...-.+-.-.|=.
T Consensus 86 dRp--L~~~~df~r~~G~~ 102 (155)
T PRK14646 86 SDE--LTSERDFKTFKGFP 102 (155)
T ss_pred CCc--CCCHHHHHHhCCCE
Confidence 454 55555554444433
No 210
>PRK14636 hypothetical protein; Provisional
Probab=84.86 E-value=8.5 Score=35.29 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=55.2
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--hcCCceEEEEEeC
Q 013535 261 RPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTE 337 (441)
Q Consensus 261 rpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~--r~~~~~~ieV~~~ 337 (441)
.+-+...+..++..+|+.+.+..+...++ +++ ..+|..++|..++ -+.++.+-..|...|.. ..+..|.+||+++
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~l-rV~ID~~~~ggV~-lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSP 81 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTL-QIMAERPDTRQLV-IEDCAALSRRLSDVFDELDPIEDAYRLEVSSP 81 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEE-EEEEECCCCCCcC-HHHHHHHHHHHHHHhccCcCCCCCeEEEEeCC
Confidence 34456667788999999999999888765 545 4444444332233 35888888899888863 3567899999975
Q ss_pred --Ccc
Q 013535 338 --DRV 340 (441)
Q Consensus 338 --Drp 340 (441)
|||
T Consensus 82 GldRp 86 (176)
T PRK14636 82 GIDRP 86 (176)
T ss_pred CCCCC
Confidence 565
No 211
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=84.70 E-value=2.2 Score=38.20 Aligned_cols=58 Identities=16% Similarity=0.330 Sum_probs=37.6
Q ss_pred EEEEEe--CCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEE-EEEEcCCCCCCChHHHHHH
Q 013535 331 ELELCT--EDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDT-FYVTDVTGNPVDPKIIDSI 391 (441)
Q Consensus 331 ~ieV~~--~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~-F~v~d~~g~~~~~~~~~~l 391 (441)
++|+.. .+.||+++.++..++++||+|+.+... ..+-.++. .||- ..+|+....+.+|
T Consensus 95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~-dpe~~~e~~l~IV--te~~iP~~li~el 155 (167)
T COG2150 95 VIEIYPEDARYPGILAGVASLIAKRGISIRQIISE-DPELQEEPKLTIV--TERPIPGDLIDEL 155 (167)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC-CcccCCCceEEEE--EeccCCHHHHHHH
Confidence 566554 678999999999999999999998743 33333332 3332 2345544444444
No 212
>PRK12483 threonine dehydratase; Reviewed
Probab=84.61 E-value=36 Score=36.65 Aligned_cols=136 Identities=12% Similarity=0.100 Sum_probs=83.6
Q ss_pred CCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHH-HHHHHHHHHH-Hh---
Q 013535 249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAER-ERVIQCLEAA-IE--- 323 (441)
Q Consensus 249 ~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~-~~l~~~L~~~-L~--- 323 (441)
.....+.|.-+||||-|.+++..|... ||.+..-......-..++......+. +.. +.|.++|++. +.
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~-----~~~~~~i~~~l~~~g~~~~d 415 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPR-----HDPRAQLLASLRAQGFPVLD 415 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCCh-----hhhHHHHHHHHHHCCCCeEE
Confidence 456789999999999999999999988 88776554433222333333332221 233 6777777543 10
Q ss_pred -----------h-----hcC---CceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCC
Q 013535 324 -----------R-----RAS---EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD 384 (441)
Q Consensus 324 -----------~-----r~~---~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~ 384 (441)
| +.+ +--++.|.=+.|||=|.++++.|.. ..||...+=.-.|+....+|. |..+.
T Consensus 416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~-~~niTeF~YR~~~~~~a~v~v-----gi~~~ 489 (521)
T PRK12483 416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGP-RWNISLFHYRNHGAADGRVLA-----GLQVP 489 (521)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCC-CcceeeeeecCCCCCceEEEE-----EEeeC
Confidence 0 111 2347889999999999999999985 245555553333555555653 22122
Q ss_pred hHHHHHHHHHhcc
Q 013535 385 PKIIDSIRRQIGH 397 (441)
Q Consensus 385 ~~~~~~l~~~l~~ 397 (441)
+++.+++.+.|.+
T Consensus 490 ~~~~~~~~~~l~~ 502 (521)
T PRK12483 490 EDERAALDAALAA 502 (521)
T ss_pred hhHHHHHHHHHHH
Confidence 3455677776655
No 213
>PRK14634 hypothetical protein; Provisional
Probab=84.47 E-value=12 Score=33.65 Aligned_cols=89 Identities=19% Similarity=0.105 Sum_probs=60.2
Q ss_pred cchHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--hcCCceEEEEEeC-
Q 013535 262 PKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTE- 337 (441)
Q Consensus 262 pGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~--r~~~~~~ieV~~~- 337 (441)
..+...+..++..+|+.+.+..+...++ +++ ..+|...+|..++ -+.++.+-..|...|.. ..+..|.+||+++
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~l-rV~ID~~~g~~v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 84 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTL-QVQIRRSSGSDVS-LDDCAGFSGPMGEALEASQLLTEAYVLEISSPG 84 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEE-EEEEECCCCCccc-HHHHHHHHHHHHHHhcccccCCCCeEEEEeCCC
Confidence 3455566788899999999999988764 555 4444545564343 25788888889888863 3467899999975
Q ss_pred -CccchHHHHHHHHHHCC
Q 013535 338 -DRVGLLSDITRIFRENS 354 (441)
Q Consensus 338 -DrpGLL~~It~~l~~~~ 354 (441)
||| |...-.+-.-.|
T Consensus 85 ldRp--L~~~~~f~r~~G 100 (155)
T PRK14634 85 IGDQ--LSSDRDFQTFRG 100 (155)
T ss_pred CCCc--CCCHHHHHHhCC
Confidence 555 444444444434
No 214
>PRK06382 threonine dehydratase; Provisional
Probab=84.42 E-value=6.5 Score=40.84 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=46.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEE----e-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhccc
Q 013535 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS----S-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (441)
Q Consensus 26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~----t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~ 97 (441)
..+.+.|..+|+||-|++++..|.++|+||.+.... . ..+...-.|.|... + ++..+.|.+.|...
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-~-----~~~~~~v~~~L~~~ 399 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-G-----QDHLDRILNALREM 399 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-C-----HHHHHHHHHHHHHC
Confidence 457899999999999999999999999999977664 1 23555555666433 1 22334556666543
No 215
>PRK08818 prephenate dehydrogenase; Provisional
Probab=84.37 E-value=2.4 Score=43.48 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=39.1
Q ss_pred CeEEEEEEeC-CCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEe
Q 013535 115 EHTSIEFTGT-DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (441)
Q Consensus 115 ~~t~i~v~~~-DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~ 164 (441)
..+.+.+.-+ |+||.|++|..+|+.+|+||.+-.+ .......-.|+|.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence 5677777776 9999999999999999999999998 43333444488765
No 216
>PRK08198 threonine dehydratase; Provisional
Probab=83.82 E-value=8.4 Score=39.88 Aligned_cols=68 Identities=16% Similarity=0.324 Sum_probs=47.2
Q ss_pred CCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-----CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 112 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-----NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 112 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-----~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
.......+.|.-+|+||-|+++...++++|.||.+....-. .+.+.-.+.+.- .+++..+.|.+.|++
T Consensus 323 ~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~-------~~~~~~~~l~~~L~~ 395 (404)
T PRK08198 323 AAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET-------RGPEHIEEILDALRD 395 (404)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999998876532 122222222211 135566777777654
No 217
>PLN02317 arogenate dehydratase
Probab=83.73 E-value=4.4 Score=41.66 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=41.5
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCe---------------eEEEEEEEcCCCCCCC
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK---------------VKDTFYVTDVTGNPVD 384 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~---------------~~d~F~v~d~~g~~~~ 384 (441)
.+.|-+.-.|+||.|+++-.+|+.+|||+.+.+..-...+ -.=.||| |-+|..-+
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d 352 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMAD 352 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCC
Confidence 3566667789999999999999999999999987654433 2448888 44465433
No 218
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=83.15 E-value=8.7 Score=39.36 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=46.9
Q ss_pred CCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-----eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-----HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 113 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-----~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
......+.|.-+|+||.|++++..++++|.||.+..-.. ..+.+.-.+.+.. . +++..+.|.+.|.+
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet--~-----~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLET--R-----GKEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEe--C-----CHHHHHHHHHHHHH
Confidence 345668999999999999999999999999999875442 1234444444433 1 24555677777654
No 219
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=82.86 E-value=7.5 Score=39.86 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=30.9
Q ss_pred CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEE
Q 013535 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMV 284 (441)
Q Consensus 250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i 284 (441)
....+.|..+|+||.|.+++..+++.|.||.+-.-
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~ 338 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDH 338 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEe
Confidence 34478999999999999999999999999987643
No 220
>PLN02551 aspartokinase
Probab=82.62 E-value=54 Score=35.31 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=65.6
Q ss_pred CCeEEEEEEec---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHH---HH
Q 013535 249 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEA---AI 322 (441)
Q Consensus 249 ~~~t~I~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~---~L 322 (441)
.+.+.|+|.+. +.+|+++++...|+++|++|.-. .+.. .--+|.|...+-. ..+.+++.+.+ .|
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~~~------~~~~i~~~l~~l~~el 433 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSKLW------SRELIQQELDHLVEEL 433 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhHhh------hhhhHHHHHHHHHHHh
Confidence 45677888655 68999999999999999999865 2322 2223555432111 11122222222 12
Q ss_pred hh--h---cCCceEEEEEeC--CccchHHHHHHHHHHCCceEEEEE
Q 013535 323 ER--R---ASEGLELELCTE--DRVGLLSDITRIFRENSLSIKRAE 361 (441)
Q Consensus 323 ~~--r---~~~~~~ieV~~~--DrpGLL~~It~~l~~~~v~I~~A~ 361 (441)
.. . ...-.+|.|.+. .+||+++++-.+|.+.||||....
T Consensus 434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs 479 (521)
T PLN02551 434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS 479 (521)
T ss_pred hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE
Confidence 21 0 122356666654 689999999999999999998766
No 221
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=82.39 E-value=2.6 Score=40.45 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=45.0
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEE--EEEEEccCCCCCCCHHHHHHHHHHHHHH
Q 013535 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQ--EFYIRHVDGLPISSEAERERVIQCLEAA 321 (441)
Q Consensus 251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d--~F~V~~~~g~~i~~~~~~~~l~~~L~~~ 321 (441)
..+|.+...|.||.+.+|+++|+..|+||.+--+.-....++- +..++-.+ .-+++.++.|++.
T Consensus 77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd-------~VveQa~rQiedl 142 (309)
T KOG2663|consen 77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD-------GVVEQARRQIEDL 142 (309)
T ss_pred ceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH-------HHHHHHHHHHHHh
Confidence 4568999999999999999999999999998877655444443 34443221 2455555555543
No 222
>PRK14645 hypothetical protein; Provisional
Probab=82.20 E-value=15 Score=32.83 Aligned_cols=90 Identities=22% Similarity=0.227 Sum_probs=60.7
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh--cCCceEEEEEeC
Q 013535 261 RPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE 337 (441)
Q Consensus 261 rpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r--~~~~~~ieV~~~ 337 (441)
...+-..+..++..+|+.+.+..+...++ +++- .+|...+|..++- +.++.+-..|...|... .+..|.+||+++
T Consensus 8 ~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilr-V~ID~~~~~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSP 85 (154)
T PRK14645 8 NPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVL-VRIDRKDEQPVTV-EDLERASRALEAELDRLDPIEGEYRLEVESP 85 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEECCCCCCcCH-HHHHHHHHHHHHHhcccccCCCceEEEEeCC
Confidence 33456667889999999999999988764 5554 4444333433432 57888888888888643 467899999975
Q ss_pred --CccchHHHHHHHHHHCC
Q 013535 338 --DRVGLLSDITRIFRENS 354 (441)
Q Consensus 338 --DrpGLL~~It~~l~~~~ 354 (441)
||| |...-.+-.-.|
T Consensus 86 GldRp--L~~~~df~r~~G 102 (154)
T PRK14645 86 GPKRP--LFTARHFERFAG 102 (154)
T ss_pred CCCCC--CCCHHHHHHhCC
Confidence 555 444444444444
No 223
>PRK06349 homoserine dehydrogenase; Provisional
Probab=82.03 E-value=6.5 Score=41.15 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=40.9
Q ss_pred CCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEe
Q 013535 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (441)
Q Consensus 113 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~ 164 (441)
....+.|.+...|+||.|++|+++|.++|+||.+.......+....++.+++
T Consensus 345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 3456889999999999999999999999999998765543334445566666
No 224
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=81.94 E-value=2.5 Score=45.45 Aligned_cols=61 Identities=16% Similarity=0.415 Sum_probs=44.9
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEEEEEEcCCCCCCChHHHHHHHH
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYVTDVTGNPVDPKIIDSIRR 393 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~F~v~d~~g~~~~~~~~~~l~~ 393 (441)
.+.+-+.-.|+||.+..|+..|.+++|||...++... |+.+.=.+.+ ..+++++.+++|++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~----D~~v~~~~l~~i~~ 513 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL----DQPVPDEVLEEIKA 513 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc----CCCCCHHHHHHHhc
Confidence 4556666789999999999999999999999998754 4444433333 44566667777764
No 225
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.89 E-value=8.2 Score=32.78 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=39.1
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEEEEEEEEe
Q 013535 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (441)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~dvF~V~~ 164 (441)
.+.+.+..+|+||-|+++-..|+.+|+|+..-...... ....=.|+|.-
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 56677777999999999999999999999988877653 34555777755
No 226
>PRK09224 threonine dehydratase; Reviewed
Probab=81.43 E-value=59 Score=34.87 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=71.9
Q ss_pred CCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH-H-----
Q 013535 249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA-I----- 322 (441)
Q Consensus 249 ~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~-L----- 322 (441)
.....+.|.-|||||-|.+++..|. +.||..-+-.-.+..-..+|+.....+. +...+.|.+.|++. +
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l 399 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL 399 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence 3466889999999999999999999 6788775544333222334443332221 11266777777543 1
Q ss_pred h---------h-----hcC---CceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEE
Q 013535 323 E---------R-----RAS---EGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS 363 (441)
Q Consensus 323 ~---------~-----r~~---~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~ 363 (441)
. | +.+ .--...+.=+.|||-|-+....|. -+-||...+=.
T Consensus 400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 0 1 111 134788999999999999999666 77899988864
No 227
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=81.33 E-value=8 Score=38.04 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=41.8
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEe
Q 013535 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTD 164 (441)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~ 164 (441)
..|.|.+..+|+||.|+++-++|+.+|+|...-..... .+.+.=.|||.-
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~ 243 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI 243 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence 57888888889999999999999999999988877654 445667788765
No 228
>PRK09084 aspartate kinase III; Validated
Probab=81.03 E-value=23 Score=37.33 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=62.3
Q ss_pred CeEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCC
Q 013535 26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (441)
Q Consensus 26 ~~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~ 102 (441)
+...|+|.+. +.+|.++++...|+++|+||.-... +. .-..|.+...+-.........+.+.+.|...
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s-se---~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~----- 375 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT-SE---VSVSLTLDTTGSTSTGDTLLTQALLTELSQL----- 375 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec-cC---cEEEEEEechhhhhhhhHHHHHHHHHHHhcC-----
Confidence 4456777654 6899999999999999999985532 12 1234666432211000001223333333221
Q ss_pred CcceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCC
Q 013535 103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHC 142 (441)
Q Consensus 103 ~~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~ 142 (441)
..+.. ..+...|.+.|. ++||+++++..+|+..++
T Consensus 376 ---~~i~~--~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 376 ---CRVEV--EEGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred ---CeEEE--ECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 11222 457788888886 789999999999987533
No 229
>PRK08198 threonine dehydratase; Provisional
Probab=80.81 E-value=13 Score=38.52 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=32.8
Q ss_pred CCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEE
Q 013535 249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN 285 (441)
Q Consensus 249 ~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 285 (441)
.....+.|.-+|+||-|.++...+++.|.||.+....
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 4456899999999999999999999999999987654
No 230
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.25 E-value=14 Score=28.75 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=26.3
Q ss_pred EEEEE---eCCccchHHHHHHHHHHCCceEEEEE
Q 013535 331 ELELC---TEDRVGLLSDITRIFRENSLSIKRAE 361 (441)
Q Consensus 331 ~ieV~---~~DrpGLL~~It~~l~~~~v~I~~A~ 361 (441)
.|+|. ..++||++++|..+|+++|+||....
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~ 36 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT 36 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe
Confidence 45552 46889999999999999999999874
No 231
>PLN02550 threonine dehydratase
Probab=79.92 E-value=48 Score=36.26 Aligned_cols=134 Identities=18% Similarity=0.209 Sum_probs=83.2
Q ss_pred CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH------H
Q 013535 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEAA------I 322 (441)
Q Consensus 250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~------L 322 (441)
....+.|.-+||||-|.+++..|... ||.+..-.... +.+. +++..... .++..+.|.++|++. |
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~~-----~~~~~~~i~~~l~~~g~~~~~l 487 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEAL-VLYSVGVH-----TEQELQALKKRMESAQLRTVNL 487 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceE-EEEEEEeC-----CHHHHHHHHHHHHHCCCCeEeC
Confidence 44678999999999999999999986 88766544432 2222 22222211 235677777777643 1
Q ss_pred h---------h-----hc--CCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChH
Q 013535 323 E---------R-----RA--SEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPK 386 (441)
Q Consensus 323 ~---------~-----r~--~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~ 386 (441)
. | |. .+--.+.+.=+.|||-|.++...|.. +-||...+=...|+....+|. |..+.++
T Consensus 488 ~~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~YR~~~~~~a~vlv-----Gi~v~~~ 561 (591)
T PLN02550 488 TSNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSP-RWNISLFHYRGQGETGANVLV-----GIQVPPE 561 (591)
T ss_pred CCChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEeecCCCCCccEEE-----EEeeCHH
Confidence 0 0 11 11246788899999999999997774 346666664444555555553 2222235
Q ss_pred HHHHHHHHhcc
Q 013535 387 IIDSIRRQIGH 397 (441)
Q Consensus 387 ~~~~l~~~l~~ 397 (441)
+.+.+.+.|.+
T Consensus 562 e~~~l~~~l~~ 572 (591)
T PLN02550 562 EMQEFKSRANA 572 (591)
T ss_pred HHHHHHHHHHH
Confidence 66777777765
No 232
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=79.48 E-value=46 Score=35.12 Aligned_cols=112 Identities=12% Similarity=0.111 Sum_probs=69.5
Q ss_pred CCeEEEEEEecC---CcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh
Q 013535 249 KDYTVITMRSKD---RPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR 325 (441)
Q Consensus 249 ~~~t~I~V~~~D---rpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r 325 (441)
.+.+.|+|.+.. .+|.++++...|++.|+||.--........ -+|.|... ...+....|.+.....
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~---------~~~~a~~~l~~~~~~~ 373 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPES---------DAPRALRALLEEKLEL 373 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchh---------hHHHHHHHHHHHHhhh
Confidence 456677775543 459999999999999999965322222222 34665432 2223333333332211
Q ss_pred c------CCceEEEEEeC---CccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEE
Q 013535 326 A------SEGLELELCTE---DRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYV 375 (441)
Q Consensus 326 ~------~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v 375 (441)
. ..-..|.+.+. ..||+.+++..+|++.++||.... .....=+|.|
T Consensus 374 ~~~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----sSe~~Is~vV 428 (447)
T COG0527 374 LAEVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----SSEISISFVV 428 (447)
T ss_pred cceEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----cCCceEEEEE
Confidence 1 11345666654 679999999999999999999887 2223445656
No 233
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.40 E-value=10 Score=29.49 Aligned_cols=57 Identities=21% Similarity=0.401 Sum_probs=37.0
Q ss_pred eCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 336 TEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 336 ~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
..+.||++++|.++|+++|+||.... + ++ ..=.|-+.... .-++++.+++|.++|.+
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~-~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDP-NGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcc-cccchHHHHHHHHHHHh
Confidence 35789999999999999999999884 2 33 22344443322 11333356677776665
No 234
>PRK14647 hypothetical protein; Provisional
Probab=77.32 E-value=28 Score=31.32 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh--cCCceEEEEEeC--C
Q 013535 264 LLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE--D 338 (441)
Q Consensus 264 Ll~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r--~~~~~~ieV~~~--D 338 (441)
+-..+..++..+|+.+.+..+...++ +++- .+|....|-. -+.++.+-..|...|... .++.|.+||+++ |
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lr-V~ID~~~gvs---lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~ 85 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLR-LFIDKEGGVN---LDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLD 85 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEE-EEEeCCCCCC---HHHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCC
Confidence 33445678899999999999998765 5554 4443333422 357888888998888643 467899999976 5
Q ss_pred ccchHHHHHHHHHHCC
Q 013535 339 RVGLLSDITRIFRENS 354 (441)
Q Consensus 339 rpGLL~~It~~l~~~~ 354 (441)
|| |...-.+-.-.|
T Consensus 86 Rp--L~~~~~f~r~~G 99 (159)
T PRK14647 86 RP--LKKEADYERYAG 99 (159)
T ss_pred Cc--CCCHHHHHHhCC
Confidence 55 444444444434
No 235
>PRK14640 hypothetical protein; Provisional
Probab=76.87 E-value=28 Score=31.04 Aligned_cols=88 Identities=15% Similarity=0.159 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--hcCCceEEEEEeC--C
Q 013535 264 LLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTE--D 338 (441)
Q Consensus 264 Ll~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~--r~~~~~~ieV~~~--D 338 (441)
+...+...+..+|+.+.+......++ +.+ ..+|...+| + .-+.++.+-.+|...|.. ..+..|.+||+++ |
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~l-rV~ID~~~g--v-~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~ 83 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTL-RVYIDGENG--V-SVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLD 83 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEE-EEEEECCCC--C-CHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 44456678899999999999988764 555 344443444 3 235889999999888863 3467899999975 5
Q ss_pred ccchHHHHHHHHHHCCceE
Q 013535 339 RVGLLSDITRIFRENSLSI 357 (441)
Q Consensus 339 rpGLL~~It~~l~~~~v~I 357 (441)
|| |...-.+-.-.|-.|
T Consensus 84 Rp--L~~~~~f~r~~G~~v 100 (152)
T PRK14640 84 RP--LFKVAQFEKYVGQEA 100 (152)
T ss_pred Cc--CCCHHHHHHhCCCeE
Confidence 55 555555555555433
No 236
>PRK14637 hypothetical protein; Provisional
Probab=76.83 E-value=28 Score=31.04 Aligned_cols=76 Identities=12% Similarity=0.109 Sum_probs=54.6
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhc-CCceEEEEEeC-
Q 013535 261 RPKLLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRA-SEGLELELCTE- 337 (441)
Q Consensus 261 rpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~-~~~~~ieV~~~- 337 (441)
--|-...+..++..+|+.+.+..+...++ +.+-+|. ....| + .-+.++.+-+.|...|..-. +..|.+||+++
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~I-D~~~g--V-~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPG 82 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVI-YSAGG--V-GLDDCARVHRILVPRLEALGGVRDVFLEVSSPG 82 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEE-ECCCC--C-CHHHHHHHHHHHHHHhcccccccCcEEEEeCCC
Confidence 35777888899999999999999998865 5554444 33333 2 23578888888887775432 35789999975
Q ss_pred -Ccc
Q 013535 338 -DRV 340 (441)
Q Consensus 338 -Drp 340 (441)
|||
T Consensus 83 ldRp 86 (151)
T PRK14637 83 IERV 86 (151)
T ss_pred CCCC
Confidence 565
No 237
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=76.44 E-value=20 Score=26.54 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.7
Q ss_pred eCCCcchHHHHHHHHHhcCCeEEEEEE
Q 013535 123 GTDRPGLFSEVCAVLADLHCNVVNAEI 149 (441)
Q Consensus 123 ~~DrpGLl~~i~~~L~~~g~~I~~A~i 149 (441)
.+|.||.++++...|+++|++|.....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 378999999999999999999985543
No 238
>PRK09224 threonine dehydratase; Reviewed
Probab=76.30 E-value=36 Score=36.48 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=70.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCC----C
Q 013535 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS----F 100 (441)
Q Consensus 26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~----~ 100 (441)
.-..+.|.-|||||-|.+++..|. +.||.+-.-.. ..+.+- +|+.....+. +.-.+.|.+.|....- +
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~-V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l 399 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAH-IFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL 399 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEE-EEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence 346888999999999999999999 68888755432 222222 2332232221 1114556666655321 1
Q ss_pred CCCc--cee----eee--cCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEE
Q 013535 101 APSL--RSS----VGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (441)
Q Consensus 101 ~~~~--~~~----v~~--~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~ 150 (441)
.... +.. |.- ....+-..+.+.-|.|||-|.+...+|. -+.||...+=.
T Consensus 400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 0000 000 110 1123456788889999999999999777 77888877764
No 239
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=75.82 E-value=6.2 Score=42.52 Aligned_cols=59 Identities=19% Similarity=0.356 Sum_probs=42.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCchHHHHHHH
Q 013535 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQ 91 (441)
Q Consensus 28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~ 91 (441)
..+.+.-.|+||..+.++..|+++|+||...++.. .+|.++-++.+.. +++ ++.++.|+
T Consensus 453 ~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~----~v~-~~~l~~i~ 513 (526)
T PRK13581 453 HMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD----PVP-EEVLEELR 513 (526)
T ss_pred eEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC----CCC-HHHHHHHh
Confidence 44455669999999999999999999999988875 5677775555422 122 44555555
No 240
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=75.64 E-value=32 Score=30.64 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh--cCCceEEEEEeC--C
Q 013535 264 LLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE--D 338 (441)
Q Consensus 264 Ll~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r--~~~~~~ieV~~~--D 338 (441)
+-..+..++..+|+.+.+..+...++ ..+-+ +|....| + +-+.++.+-..+...|... .+..|.+||+++ |
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V-~Id~~~g--v-~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~ 84 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRI-YIDKEGG--I-DLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLD 84 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEE-EEECCCC--C-CHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCC
Confidence 34455788899999999999998765 44443 3333334 2 3358888888888888643 457899999975 5
Q ss_pred cc
Q 013535 339 RV 340 (441)
Q Consensus 339 rp 340 (441)
||
T Consensus 85 Rp 86 (154)
T PRK00092 85 RP 86 (154)
T ss_pred Cc
Confidence 55
No 241
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=75.40 E-value=18 Score=26.41 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=36.5
Q ss_pred EEEEEc---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHh
Q 013535 29 VIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94 (441)
Q Consensus 29 ~v~V~~---~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L 94 (441)
.|.+.| ++.+|+++++..+|++.|++|.-....+ .+ .--.|.|...+. ++..+.|.+.|
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~-s~-~~is~~v~~~~~-----~~~~~~lh~~~ 64 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS-SE-RNISAVIDEDDA-----TKALRAVHERF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-cc-cEEEEEEeHHHH-----HHHHHHHHHHH
Confidence 355555 5789999999999999999997554433 22 222366643221 23445555544
No 242
>PRK14639 hypothetical protein; Provisional
Probab=75.34 E-value=27 Score=30.73 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=56.1
Q ss_pred HHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--hcCCceEEEEEeC--Cccch
Q 013535 268 IVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTE--DRVGL 342 (441)
Q Consensus 268 i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~--r~~~~~~ieV~~~--DrpGL 342 (441)
+-.++..+|+.+.+......++ +++ ..+|....| ++ -+.++.+-+.|.+.|.. ..+..|.+||+++ |||
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~g--v~-iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~Rp-- 76 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIY-RVYITKEGG--VN-LDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERK-- 76 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEE-EEEEeCCCC--CC-HHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCc--
Confidence 3457889999999999998865 445 444443334 32 35889999999888864 3467899999975 555
Q ss_pred HHHHHHHHHHCCceE
Q 013535 343 LSDITRIFRENSLSI 357 (441)
Q Consensus 343 L~~It~~l~~~~v~I 357 (441)
|...-.+-.-.|-.|
T Consensus 77 L~~~~~f~r~~G~~v 91 (140)
T PRK14639 77 LSKIEHFAKSIGELV 91 (140)
T ss_pred CCCHHHHHHhCCCEE
Confidence 444444444444333
No 243
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=75.34 E-value=30 Score=25.50 Aligned_cols=28 Identities=14% Similarity=0.470 Sum_probs=24.9
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhcCCeEE
Q 013535 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVV 145 (441)
Q Consensus 118 ~i~v~~~---DrpGLl~~i~~~L~~~g~~I~ 145 (441)
.|.+.|. +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 5677775 789999999999999999996
No 244
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=74.59 E-value=16 Score=26.99 Aligned_cols=28 Identities=11% Similarity=0.271 Sum_probs=24.3
Q ss_pred EEEEEcc---CCCcHHHHHHHHHHhCCceEE
Q 013535 29 VIKVDSV---NKHGILLQVIQVLNDVNLVIK 56 (441)
Q Consensus 29 ~v~V~~~---DrpGLf~~i~~~L~~~glnI~ 56 (441)
.|.+.+. +.||+++++..+|++.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4666664 789999999999999999996
No 245
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=74.20 E-value=5.7 Score=42.75 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=42.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCchHHHHHHH
Q 013535 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQ 91 (441)
Q Consensus 28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~ 91 (441)
..+.+.-.|+||....++..|.++++||...++.. .+|.++-++.+.. +++ ++.++.|+
T Consensus 452 ~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~----~v~-~~~l~~i~ 512 (525)
T TIGR01327 452 IMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ----PVP-DEVLEEIK 512 (525)
T ss_pred cEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC----CCC-HHHHHHHh
Confidence 34455669999999999999999999999888875 5678885555522 222 34555555
No 246
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=74.05 E-value=19 Score=37.16 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=41.6
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEe
Q 013535 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTD 164 (441)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~ 164 (441)
..|.+.+..+|+||.|+++-..|+.+|+|+..-..... ++.+.=.|||.-
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~ 346 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV 346 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence 36667777789999999999999999999999888754 455777888866
No 247
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=73.96 E-value=31 Score=25.03 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=26.8
Q ss_pred EEEEEe---CCCcchHHHHHHHHHhcCCeEEEEEE
Q 013535 118 SIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEI 149 (441)
Q Consensus 118 ~i~v~~---~DrpGLl~~i~~~L~~~g~~I~~A~i 149 (441)
.|.+.| .+.||+++++..+|++.|++|.....
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 466666 48899999999999999999977644
No 248
>PRK14631 hypothetical protein; Provisional
Probab=73.93 E-value=42 Score=30.71 Aligned_cols=88 Identities=15% Similarity=0.085 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEcc----------------CCCCCCCHHHHHHHHHHHHHHHhh--
Q 013535 264 LLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHV----------------DGLPISSEAERERVIQCLEAAIER-- 324 (441)
Q Consensus 264 Ll~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~----------------~g~~i~~~~~~~~l~~~L~~~L~~-- 324 (441)
+...+.-++..+|+.+.+..+...++ +++-+|. ..+ .+..++ -+.++.+-..|...|..
T Consensus 10 i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~I-D~~~~~~~~~~~~~~~~~~~~~gvt-iddC~~vSr~is~~LD~~d 87 (174)
T PRK14631 10 LTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYI-DRLVEENAEPVINEDGEVEQGRGIG-VEDCVRVTQQVGAMLDVHD 87 (174)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEE-ecCcccccccccccccccccCCCcC-HHHHHHHHHHHHHHhcccc
Confidence 44556678899999999999998765 5554444 322 111222 35788888888888863
Q ss_pred hcCCceEEEEEeC--CccchHHHHHHHHHHCCc
Q 013535 325 RASEGLELELCTE--DRVGLLSDITRIFRENSL 355 (441)
Q Consensus 325 r~~~~~~ieV~~~--DrpGLL~~It~~l~~~~v 355 (441)
..+..|.+||+++ ||| |.....+-.-.|=
T Consensus 88 ~i~~~Y~LEVSSPGldRp--L~~~~df~r~~G~ 118 (174)
T PRK14631 88 PISGEYALEVSSPGWDRP--FFQLEQLQGYIGQ 118 (174)
T ss_pred cCCCCeEEEEeCCCCCCc--CCCHHHHHHhCCC
Confidence 3567899999976 555 5555555555453
No 249
>PRK14633 hypothetical protein; Provisional
Probab=73.89 E-value=39 Score=30.03 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--hcCCceEEEEEeC--Cc
Q 013535 264 LLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTE--DR 339 (441)
Q Consensus 264 Ll~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~--r~~~~~~ieV~~~--Dr 339 (441)
+-..+..++..+|+.+.+......+++.+-+ +|...+|-. -+.++.+-.+|...|.. ..++.|.+||+++ ||
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~lrV-~ID~~~Gv~---lddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR 81 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTIRI-FIDHENGVS---VDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR 81 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEE-EEeCCCCCC---HHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC
Confidence 3445667899999999999998876665544 434344422 35888898899888863 3467899999975 55
Q ss_pred cchHHHHHHHHHHCCc
Q 013535 340 VGLLSDITRIFRENSL 355 (441)
Q Consensus 340 pGLL~~It~~l~~~~v 355 (441)
| |...-.+-.-.|=
T Consensus 82 p--L~~~~~f~r~~G~ 95 (150)
T PRK14633 82 Q--IFNIIQAQALVGF 95 (150)
T ss_pred C--CCCHHHHHHhCCC
Confidence 5 5555555555443
No 250
>PRK11898 prephenate dehydratase; Provisional
Probab=73.72 E-value=12 Score=36.94 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=38.4
Q ss_pred eEEEEEeC-CccchHHHHHHHHHHCCceEEEEEEEeeC-CeeEEEEEEEcCCCCC
Q 013535 330 LELELCTE-DRVGLLSDITRIFRENSLSIKRAEISTIG-GKVKDTFYVTDVTGNP 382 (441)
Q Consensus 330 ~~ieV~~~-DrpGLL~~It~~l~~~~v~I~~A~i~T~g-~~~~d~F~v~d~~g~~ 382 (441)
+.+-+.-. |+||-|+++-..|+++|||+.+.+..-.. ..-.=.||| |-+|..
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~ 250 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHI 250 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEEccC
Confidence 44445554 46999999999999999999999877543 335568888 445654
No 251
>PRK09084 aspartate kinase III; Validated
Probab=73.27 E-value=37 Score=35.81 Aligned_cols=100 Identities=12% Similarity=0.131 Sum_probs=61.6
Q ss_pred CCCeEEEEEEec---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Q 013535 248 EKDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER 324 (441)
Q Consensus 248 ~~~~t~I~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~ 324 (441)
..+...|+|.+. +.+|.++++...|++.|+||.--. +.. .--+|.|...+-.. .....+...+.+.+..
T Consensus 303 ~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse--~sIs~~i~~~~~~~----~~~~~~~~~l~~el~~ 374 (448)
T PRK09084 303 RRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE--VSVSLTLDTTGSTS----TGDTLLTQALLTELSQ 374 (448)
T ss_pred eCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC--cEEEEEEechhhhh----hhhHHHHHHHHHHHhc
Confidence 345677888654 689999999999999999998654 222 22346654321110 0111222223222321
Q ss_pred --h---cCCceEEEEEeC---CccchHHHHHHHHHHCCc
Q 013535 325 --R---ASEGLELELCTE---DRVGLLSDITRIFRENSL 355 (441)
Q Consensus 325 --r---~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v 355 (441)
+ ...-..|.|.+. ++||+++++..+|.+.++
T Consensus 375 ~~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 375 LCRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred CCeEEEECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 1 123467888876 799999999999987433
No 252
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=72.97 E-value=1.8e+02 Score=33.28 Aligned_cols=104 Identities=14% Similarity=0.104 Sum_probs=65.6
Q ss_pred CeEEEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCC
Q 013535 26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (441)
Q Consensus 26 ~~~~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~ 102 (441)
+...|+|.+. +.+|..+++..+|+++|+||.--...+. +. ...|.+... ..+.+.+.|.....
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~-sis~~i~~~---------~~~~~~~~l~~~~~--- 381 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQ-LLQLAYTSE---------VADSALKLLDDAAL--- 381 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-Cc-EEEEEEeHH---------HHHHHHHHHHhhcC---
Confidence 4456677665 7788999999999999999975443322 22 223444321 11122222322110
Q ss_pred CcceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEE
Q 013535 103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNA 147 (441)
Q Consensus 103 ~~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A 147 (441)
. .++.. ..+...|.++|. .++|+.+++..+|++.|+++..-
T Consensus 382 ~--~~i~v--~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 382 P--GELKL--REGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred C--CcEEE--eCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 0 11222 357888999984 68999999999999999999544
No 253
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.70 E-value=24 Score=25.83 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=30.6
Q ss_pred EEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013535 29 VIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVID 75 (441)
Q Consensus 29 ~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~ 75 (441)
.|.+.+. +++|..+++.++|++.|++|.-....+ .+. --.|.+..
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~-s~~-~isf~v~~ 50 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA-SEI-NISCVIDE 50 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC-ccc-eEEEEEeH
Confidence 3555554 679999999999999999997554433 222 22366643
No 254
>PRK14638 hypothetical protein; Provisional
Probab=72.61 E-value=42 Score=29.85 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh--cCCceEEEEEeC--C
Q 013535 264 LLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE--D 338 (441)
Q Consensus 264 Ll~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r--~~~~~~ieV~~~--D 338 (441)
+-..+..++..+|+.+.+......++ +.+-+ +|...+|. ++ -+.++.+-..|...|... .+..|.+||+++ |
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV-~ID~~~G~-v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 86 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRI-IIDNPVGY-VS-VRDCELFSREIERFLDREDLIEHSYTLEVSSPGLD 86 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEE-EEECCCCC-cC-HHHHHHHHHHHHHHhccccccCCceEEEEeCCCCC
Confidence 33456678899999999999988764 55544 44433442 32 258888888898888633 467899999975 5
Q ss_pred ccchHHHHHHHHHHCC
Q 013535 339 RVGLLSDITRIFRENS 354 (441)
Q Consensus 339 rpGLL~~It~~l~~~~ 354 (441)
|| |...-..-.-.|
T Consensus 87 Rp--L~~~~~f~r~~G 100 (150)
T PRK14638 87 RP--LRGPKDYVRFTG 100 (150)
T ss_pred CC--CCCHHHHHHhCC
Confidence 65 444444444444
No 255
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=72.39 E-value=46 Score=38.20 Aligned_cols=103 Identities=11% Similarity=0.166 Sum_probs=63.2
Q ss_pred CeEEEEEE---ccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCC
Q 013535 26 DATVIKVD---SVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (441)
Q Consensus 26 ~~~~v~V~---~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~ 102 (441)
+...|+|. ..+.+|..+++.+.|+++|+||.-. .+. .. -.+|.+.+.+. ....+.++.+.+.|....
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~ss-e~-sis~~i~~~~~--~~~~~~~~~l~~~l~~~~---- 390 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSS-ET-NVTVSLDPSEN--LVNTDVLAALSADLSQIC---- 390 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcC-CC-EEEEEEccccc--cchHHHHHHHHHHHhhcC----
Confidence 34566664 3468999999999999999999643 222 21 12355533221 001123344444443211
Q ss_pred CcceeeeecCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeE
Q 013535 103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNV 144 (441)
Q Consensus 103 ~~~~~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I 144 (441)
.+.. ..+...|.|+|. ++||+.+++..+|++.|+++
T Consensus 391 ----~i~~--~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 391 ----RVKI--IVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred ----cEEE--eCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 1222 246688899985 88999999999999987655
No 256
>PRK14643 hypothetical protein; Provisional
Probab=71.23 E-value=49 Score=29.96 Aligned_cols=88 Identities=8% Similarity=0.056 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEEc---cCCCCCCCHHHHHHHHHHHHHHHhh--hcCCceEEEEEeC
Q 013535 264 LLFDIVCTLTDMQYVVFHGMVNTGRT-EAYQEFYIRH---VDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTE 337 (441)
Q Consensus 264 Ll~~i~~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~---~~g~~i~~~~~~~~l~~~L~~~L~~--r~~~~~~ieV~~~ 337 (441)
+-..+..++..+|+.+.+......++ +++ ..+|.+ .+|. ++ -+.++.+-+.|.+.|.. ..+..|.+||+++
T Consensus 11 l~~l~~p~~~~~G~eL~die~~~~~~~~~l-rV~Id~~~~~~gg-vt-ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSP 87 (164)
T PRK14643 11 INELVNKELEVLNLKVYEINNLKEFENDMI-QILVEDILQANKP-LD-FDILIKANDLVSNKIDQFIKTSEKYLLEISSS 87 (164)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEE-EEEEecCCCcCCC-cC-HHHHHHHHHHHHHHhCccCCCCCCeEEEecCC
Confidence 34445677889999999999999865 544 455543 2332 32 35788888888888863 3567999999975
Q ss_pred --CccchHHHHHHHHHHCCce
Q 013535 338 --DRVGLLSDITRIFRENSLS 356 (441)
Q Consensus 338 --DrpGLL~~It~~l~~~~v~ 356 (441)
||| |...-.+-.-.|-.
T Consensus 88 GleRp--L~~~~df~r~~G~~ 106 (164)
T PRK14643 88 GIEKQ--IRSQEELVKALNQW 106 (164)
T ss_pred CCCCC--CCCHHHHHHhcCCe
Confidence 444 55444444444443
No 257
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.09 E-value=38 Score=24.72 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=27.7
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWT 151 (441)
Q Consensus 118 ~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~i~T 151 (441)
.|.+.|. ++||+++++..+|++.|+++......+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4666665 789999999999999999998765443
No 258
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=70.69 E-value=12 Score=40.14 Aligned_cols=36 Identities=33% Similarity=0.599 Sum_probs=33.2
Q ss_pred EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeC
Q 013535 331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIG 366 (441)
Q Consensus 331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g 366 (441)
.++|.+.||.|+..+|...|..+++|+...+|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 489999999999999999999999999999997653
No 259
>PRK08526 threonine dehydratase; Provisional
Probab=70.24 E-value=77 Score=32.91 Aligned_cols=68 Identities=16% Similarity=0.293 Sum_probs=48.8
Q ss_pred CCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-----CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 112 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-----DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 112 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-----~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
.......+.+.-+|+||-|++++..+.+.|.||....-.... +.+.-.+.+.- .++++.++|.+.|.+
T Consensus 322 ~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 322 KSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET-------KGKEHQEEIRKILTE 394 (403)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 345778899999999999999999999999999987654421 22332233322 146777888888765
No 260
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=69.43 E-value=8.3 Score=40.54 Aligned_cols=53 Identities=21% Similarity=0.161 Sum_probs=40.3
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCee-E-EEEEEEcCCCCC
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKV-K-DTFYVTDVTGNP 382 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~-~-d~F~v~d~~g~~ 382 (441)
.+.|-++..|+||-|+++-+.|+.+|||+.+.+..-..... . =.|||.- +|..
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~-Eg~~ 85 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV-ELFH 85 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE-EcCH
Confidence 45666677899999999999999999999998876554443 3 4788843 3443
No 261
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=69.22 E-value=36 Score=24.68 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=28.5
Q ss_pred CCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEc
Q 013535 337 EDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTD 377 (441)
Q Consensus 337 ~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d 377 (441)
.++||+.++|-++|.++|+++.... | ++ ..=.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence 4779999999999999999999873 3 33 344676644
No 262
>PRK14632 hypothetical protein; Provisional
Probab=68.53 E-value=51 Score=30.03 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--hcCCceEEEEEeC--Cc
Q 013535 264 LLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTE--DR 339 (441)
Q Consensus 264 Ll~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~--r~~~~~~ieV~~~--Dr 339 (441)
+-..+..++..+|+.+.+..+...+++.+-+ +|....|- .-+.++.+-..|...|.. ..+..|.+||+++ ||
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~lrV-~ID~~~GV---~ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 85 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTVVRL-FVDGPEGV---TIDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLER 85 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEE-EEECCCCC---CHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 3344567888999999999987533455543 43333342 235788898899888863 3467899999975 55
Q ss_pred cchHHHHHHHHHHCC
Q 013535 340 VGLLSDITRIFRENS 354 (441)
Q Consensus 340 pGLL~~It~~l~~~~ 354 (441)
| |...-.+-.-.|
T Consensus 86 p--L~~~~~f~r~iG 98 (172)
T PRK14632 86 P--FFRAEQMSPYVG 98 (172)
T ss_pred c--CCCHHHHHHhCC
Confidence 5 444444444434
No 263
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=68.19 E-value=25 Score=27.82 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=41.2
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee--CCeeEEEEEE
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI--GGKVKDTFYV 375 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~--g~~~~d~F~v 375 (441)
.|.+++.+.++|+.|.+|-++-...|..+-....++. ++++.-.|-|
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 4789999999999999999999999999999998876 6676666655
No 264
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=67.37 E-value=51 Score=40.05 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=60.8
Q ss_pred HhcCCCEEEEeeCCC--CCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe---cC--CEEEEEEEEEcCCCCCCC
Q 013535 10 RRMNPPRVVIDNNTC--ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS---DG--GWFMDVFNVIDCDGKKIR 82 (441)
Q Consensus 10 ~~~~~~~V~v~~~~~--~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t---~~--g~~~d~f~V~~~~g~~~~ 82 (441)
...++..+.+..... .+.+.+.+|.+.++..++++.-+|..+|+.|++.+-+. .+ ...+..|.+..+.+....
T Consensus 470 ~~~~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~ 549 (1528)
T PF05088_consen 470 SGEGPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALD 549 (1528)
T ss_pred cCCCCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCcccc
Confidence 333445665554433 35789999999999999999999999999999997764 22 356667888777665444
Q ss_pred chHHHHHHHHHhc
Q 013535 83 DKEVIDYIQQRLE 95 (441)
Q Consensus 83 ~~~~~~~L~~~L~ 95 (441)
..+..+.+++++.
T Consensus 550 ~~~~~~~~~~a~~ 562 (1528)
T PF05088_consen 550 LDDIRERFEEAFE 562 (1528)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555655554
No 265
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=67.20 E-value=29 Score=24.59 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=25.5
Q ss_pred EEEEEcc---CCCcHHHHHHHHHHhCCceEEEEEE
Q 013535 29 VIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYI 60 (441)
Q Consensus 29 ~v~V~~~---DrpGLf~~i~~~L~~~glnI~~A~i 60 (441)
.|++.+. +.+|+.+++...|++.+.++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 3556544 7899999999999999999975543
No 266
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=66.31 E-value=3.2e+02 Score=33.60 Aligned_cols=179 Identities=13% Similarity=0.099 Sum_probs=113.8
Q ss_pred CCEEEEeeCCCCCeEEEEEEccCC---CcHHHHHHHHHHhC-CceEEEEEEE-ecCCEEEEEEEEEcCCCCC--CCchHH
Q 013535 14 PPRVVIDNNTCADATVIKVDSVNK---HGILLQVIQVLNDV-NLVIKKAYIS-SDGGWFMDVFNVIDCDGKK--IRDKEV 86 (441)
Q Consensus 14 ~~~V~v~~~~~~~~~~v~V~~~Dr---pGLf~~i~~~L~~~-glnI~~A~i~-t~~g~~~d~f~V~~~~g~~--~~~~~~ 86 (441)
...+.++......+.-+.||.|-. .-+-.+|-..|.+. +....+-+.. +.+..+-.-|++....+.. +...++
T Consensus 328 rvRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~d~~~l 407 (1528)
T PF05088_consen 328 RVRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDIDVEAL 407 (1528)
T ss_pred ceeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCCCHHHH
Confidence 356677788788888888887632 23667777777654 4455444443 4666666667776655543 222233
Q ss_pred HHHHHH-----------HhcccC-C-------------CC--------C---------------Ccceeeee----cCCC
Q 013535 87 IDYIQQ-----------RLETDA-S-------------FA--------P---------------SLRSSVGV----MPTE 114 (441)
Q Consensus 87 ~~~L~~-----------~L~~~~-~-------------~~--------~---------------~~~~~v~~----~~~~ 114 (441)
.+.|.+ +|.... . ++ | ..+..+.+ ....
T Consensus 408 e~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~ 487 (1528)
T PF05088_consen 408 EARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGP 487 (1528)
T ss_pred HHHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCC
Confidence 333322 221110 0 00 0 00112222 3345
Q ss_pred CeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee---C--CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH---N--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (441)
Q Consensus 115 ~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~---~--~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (441)
+...+.++.+..+..|+++.-+|..+|+.|.+.+-+.. + ..+.--|++.. ..+..+...+..+.+++++.++..
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~-~~~~~~~~~~~~~~~~~a~~~v~~ 566 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQY-PDGDALDLDDIRERFEEAFEAVWN 566 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEec-CCCccccHHHHHHHHHHHHHHHhc
Confidence 67999999999999999999999999999999887663 1 23677888888 355545555677888899988887
Q ss_pred CCCc
Q 013535 190 GYDD 193 (441)
Q Consensus 190 ~~~~ 193 (441)
|...
T Consensus 567 g~~e 570 (1528)
T PF05088_consen 567 GRAE 570 (1528)
T ss_pred CCCC
Confidence 7653
No 267
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=66.21 E-value=15 Score=25.60 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=26.3
Q ss_pred EEEEEeCC---ccchHHHHHHHHHHCCceEEEEEE
Q 013535 331 ELELCTED---RVGLLSDITRIFRENSLSIKRAEI 362 (441)
Q Consensus 331 ~ieV~~~D---rpGLL~~It~~l~~~~v~I~~A~i 362 (441)
.|+|.+.+ .+|.++++.++|.+++++|.....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 35566555 899999999999999999987754
No 268
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=65.65 E-value=62 Score=37.13 Aligned_cols=103 Identities=8% Similarity=0.044 Sum_probs=62.8
Q ss_pred CCeEEEEEE---ecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHh-h
Q 013535 249 KDYTVITMR---SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIE-R 324 (441)
Q Consensus 249 ~~~t~I~V~---~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~-~ 324 (441)
.+.+.|+|. ..+.+|+++++...|++.|++|.-- .+.. .--+|.+.+.+. ......++.+...|...-. .
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse--~sis~~i~~~~~--~~~~~~~~~l~~~l~~~~~i~ 393 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSE--TNVTVSLDPSEN--LVNTDVLAALSADLSQICRVK 393 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCC--CEEEEEEccccc--cchHHHHHHHHHHHhhcCcEE
Confidence 456778885 4468999999999999999999644 2322 222345443221 1011233344333332000 0
Q ss_pred hcCCceEEEEEeC---CccchHHHHHHHHHHCCceE
Q 013535 325 RASEGLELELCTE---DRVGLLSDITRIFRENSLSI 357 (441)
Q Consensus 325 r~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I 357 (441)
-...-.+|.|.+. .+||+++++..+|.+.||++
T Consensus 394 ~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 394 IIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred EeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 0123467888876 88999999999999977655
No 269
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=65.28 E-value=17 Score=26.94 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=23.8
Q ss_pred eCCccchHHHHHHHHHHCCceEEEEEE
Q 013535 336 TEDRVGLLSDITRIFRENSLSIKRAEI 362 (441)
Q Consensus 336 ~~DrpGLL~~It~~l~~~~v~I~~A~i 362 (441)
..|+||.++++.+.|.+.|++|.....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 468999999999999999999986653
No 270
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=65.21 E-value=16 Score=37.36 Aligned_cols=59 Identities=22% Similarity=0.399 Sum_probs=43.5
Q ss_pred EEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 331 ELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 331 ~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
.++|.+.||.||..++-..|...+||+...+|.-. ..-|+-.++ ++.+..++|+.++..
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~-----~~IYln~p~---l~~~~fs~L~aei~~ 60 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-----GRIYLNFPE---LEFESFSSLMAEIRR 60 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCC-----CeEEEeccc---cCHHHHHHHHHHHhc
Confidence 47999999999999999999999999999998322 234553332 233556666666664
No 271
>PLN02550 threonine dehydratase
Probab=64.90 E-value=85 Score=34.39 Aligned_cols=113 Identities=12% Similarity=0.195 Sum_probs=67.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCC----CCC
Q 013535 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS----FAP 102 (441)
Q Consensus 28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~----~~~ 102 (441)
..+.|.-+||||-|.+++.+|... ||.+..-.. ..+.+--.+.| ...+ ++..+.|.+.|....- +..
T Consensus 418 ~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~i-e~~~-----~~~~~~i~~~l~~~g~~~~~l~~ 489 (591)
T PLN02550 418 AVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSV-GVHT-----EQELQALKKRMESAQLRTVNLTS 489 (591)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEE-EeCC-----HHHHHHHHHHHHHCCCCeEeCCC
Confidence 578899999999999999999986 888765533 22332222333 2222 3455666667765431 111
Q ss_pred C------cceee-eecCCCCeEEEEEEeCCCcchHHHHHHHHHhc-CCeEEEEE
Q 013535 103 S------LRSSV-GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADL-HCNVVNAE 148 (441)
Q Consensus 103 ~------~~~~v-~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~-g~~I~~A~ 148 (441)
. .+.-+ +-..-..--.+.+.-|.|||-|...+.+|... +++-.+=+
T Consensus 490 ~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR 543 (591)
T PLN02550 490 NDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYR 543 (591)
T ss_pred ChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEee
Confidence 0 01001 00111345567888899999999999988852 44443333
No 272
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.81 E-value=10 Score=26.78 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=24.3
Q ss_pred eCCccchHHHHHHHHHHCCceEEEEEE
Q 013535 336 TEDRVGLLSDITRIFRENSLSIKRAEI 362 (441)
Q Consensus 336 ~~DrpGLL~~It~~l~~~~v~I~~A~i 362 (441)
..|.||.+.++.+.|.++|++|.....
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 478899999999999999999988765
No 273
>PRK12483 threonine dehydratase; Reviewed
Probab=64.75 E-value=2.1e+02 Score=30.91 Aligned_cols=121 Identities=18% Similarity=0.284 Sum_probs=69.2
Q ss_pred CCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHH-HHHHHHHHHhhcC
Q 013535 112 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRL-STIKELLFNVLRG 190 (441)
Q Consensus 112 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~-~~l~~~L~~~L~~ 190 (441)
.+.....+.|.-+||||-|.+++.+|... ||....-...+.+-..++.... ..+++.. ++|.+.|.+ .|
T Consensus 341 ~~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie------~~~~~~~~~~i~~~l~~--~g 410 (521)
T PRK12483 341 GEQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQ------THPRHDPRAQLLASLRA--QG 410 (521)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEE------eCChhhhHHHHHHHHHH--CC
Confidence 34577888999999999999999999988 7776554432222222332222 1124454 777777765 33
Q ss_pred CCcccccccccCCCCcccccc-cchhcccccchhhhhhhhccccCCCCCCCEEEEEcCCCCeEEEEEEecCCcchHHHHH
Q 013535 191 YDDFRKAKTSLSPPGIMNRER-RLHQIMFDDRDYERVEKAVGRVEDKSSRPQVTVLNIEKDYTVITMRSKDRPKLLFDIV 269 (441)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~-rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~t~I~V~~~DrpGLl~~i~ 269 (441)
... ..+. . ..+.+ +++ .| .+||. +.+ ..--.+.|.-|.|||-|.+++
T Consensus 411 ~~~-----~dls-d--ne~~k~h~r-~~-----------~g~~~------~~~------~~E~~~~v~iPE~pGa~~~f~ 458 (521)
T PRK12483 411 FPV-----LDLT-D--DELAKLHIR-HM-----------VGGRA------PLA------HDERLFRFEFPERPGALMKFL 458 (521)
T ss_pred CCe-----EECC-C--CHHHHHHHH-hc-----------cCCCC------CCC------CceEEEEEEcCCCCcHHHHHH
Confidence 221 1122 0 01111 111 00 12222 110 123467888999999999999
Q ss_pred HHHHh
Q 013535 270 CTLTD 274 (441)
Q Consensus 270 ~~L~~ 274 (441)
..|..
T Consensus 459 ~~l~~ 463 (521)
T PRK12483 459 SRLGP 463 (521)
T ss_pred HHhCC
Confidence 99985
No 274
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=64.24 E-value=48 Score=25.36 Aligned_cols=30 Identities=7% Similarity=0.005 Sum_probs=24.3
Q ss_pred EEEEE---ecCCcchHHHHHHHHHhCCceEEEE
Q 013535 253 VITMR---SKDRPKLLFDIVCTLTDMQYVVFHG 282 (441)
Q Consensus 253 ~I~V~---~~DrpGLl~~i~~~L~~~glnI~~A 282 (441)
.|++. ..+.+|+++++..+|++.|++|..-
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i 35 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI 35 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 45553 3678999999999999999999544
No 275
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.02 E-value=44 Score=24.13 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=30.2
Q ss_pred EEEEEc---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013535 29 VIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVID 75 (441)
Q Consensus 29 ~v~V~~---~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~ 75 (441)
.|.+.+ ++.+|+.+++...|++.|++|.-....+.+ .. -.|.+..
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~-~~-isf~i~~ 50 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE-YN-ISFVVAE 50 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc-ce-EEEEEeH
Confidence 455555 477899999999999999999755443322 11 2366644
No 276
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.91 E-value=25 Score=24.70 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=29.7
Q ss_pred ccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEE
Q 013535 34 SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVI 74 (441)
Q Consensus 34 ~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~ 74 (441)
.+|.+|.++++.+.|+++|++|....... ..|..--+|.+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 58889999999999999999997655432 223333346663
No 277
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=63.90 E-value=27 Score=30.44 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=38.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEE
Q 013535 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNV 73 (441)
Q Consensus 27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V 73 (441)
-.-+.++..||.|.++++..++++.+|||+.....- .+|.+--+..+
T Consensus 72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi 119 (150)
T COG4492 72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSI 119 (150)
T ss_pred EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEE
Confidence 356788899999999999999999999999887764 66766544444
No 278
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=63.48 E-value=2e+02 Score=30.88 Aligned_cols=106 Identities=11% Similarity=0.124 Sum_probs=69.1
Q ss_pred CCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHH-H-----
Q 013535 249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAA-I----- 322 (441)
Q Consensus 249 ~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~-L----- 322 (441)
.....+.|.-|||||-|.+++.+|.. .||..-+-.-.+..-..+|+..... +++..+.|.+.|++. +
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~-----~~~~~~~l~~~L~~~Gy~~~dl 395 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLS-----NPQERQEILARLNDGGYSVVDL 395 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeC-----CHHHHHHHHHHHHHcCCCeEEC
Confidence 45678899999999999999999997 4777665544332223344433322 225677788777643 1
Q ss_pred h---------h-----hcCC---ceEEEEEeCCccchHHHHHHHHHHCCceEEEEEE
Q 013535 323 E---------R-----RASE---GLELELCTEDRVGLLSDITRIFRENSLSIKRAEI 362 (441)
Q Consensus 323 ~---------~-----r~~~---~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i 362 (441)
. | +.+. --+..+.=+-|||-|-+.-.+| .-+-||...+=
T Consensus 396 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l-~~~~~It~f~Y 451 (499)
T TIGR01124 396 TDDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTL-QGYWNISLFHY 451 (499)
T ss_pred CCCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhc-CCCCceeeEEE
Confidence 0 0 1122 2378888999999888876633 33458888875
No 279
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=62.85 E-value=60 Score=37.58 Aligned_cols=76 Identities=8% Similarity=0.093 Sum_probs=55.6
Q ss_pred HHHHHHHhcCC---CEEEEeeCCCC-CeEEEEE---EccCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEc
Q 013535 4 EYAKLIRRMNP---PRVVIDNNTCA-DATVIKV---DSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVID 75 (441)
Q Consensus 4 ~~~~~~~~~~~---~~V~v~~~~~~-~~~~v~V---~~~DrpGLf~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~V~~ 75 (441)
.|..++.+... |.+.+...... ....+.+ -.+...|+|..++..+..+||.+..+.+-+ .+|..+.+|+|..
T Consensus 203 ~y~~~~~~~~~~~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~ 282 (1002)
T PTZ00324 203 IIQELLNRQVSSVGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRG 282 (1002)
T ss_pred HHHHHHHHHHhcCCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEec
Confidence 46666655443 77777766532 3334444 356677899999999999999999999987 6888888999976
Q ss_pred CCCC
Q 013535 76 CDGK 79 (441)
Q Consensus 76 ~~g~ 79 (441)
..+.
T Consensus 283 ~~~~ 286 (1002)
T PTZ00324 283 LTAD 286 (1002)
T ss_pred CCCC
Confidence 5443
No 280
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.57 E-value=78 Score=28.35 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=54.0
Q ss_pred chHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh--cCCceEEEEEeC--
Q 013535 263 KLLFDIVCTLTDMQYVVFHGMVNTGR-TEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--ASEGLELELCTE-- 337 (441)
Q Consensus 263 GLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r--~~~~~~ieV~~~-- 337 (441)
.+..-+-..+..+|+.+.+..+...+ ++++-+|. ... |. + +-+.++.+-+++...|... .+..|.+||+++
T Consensus 9 ~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~i-d~~-g~-v-~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGl 84 (153)
T COG0779 9 KVTELIEPVVESLGFELVDVEFVKEGRDSVLRIYI-DKE-GG-V-TLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGL 84 (153)
T ss_pred HHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEe-CCC-CC-C-CHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCC
Confidence 34555667889999999999999987 56665554 222 32 2 2257888888888888743 356899999975
Q ss_pred Cccc
Q 013535 338 DRVG 341 (441)
Q Consensus 338 DrpG 341 (441)
|||=
T Consensus 85 dRpL 88 (153)
T COG0779 85 DRPL 88 (153)
T ss_pred CCCc
Confidence 6774
No 281
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.87 E-value=58 Score=23.50 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=27.5
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWT 151 (441)
Q Consensus 118 ~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~i~T 151 (441)
.|.+.|. +.+|+++++...|++.|++|......+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5666664 778999999999999999997765433
No 282
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.58 E-value=50 Score=23.91 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=25.6
Q ss_pred EEEEEc---cCCCcHHHHHHHHHHhCCceEEEEEE
Q 013535 29 VIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYI 60 (441)
Q Consensus 29 ~v~V~~---~DrpGLf~~i~~~L~~~glnI~~A~i 60 (441)
.|.+.+ ++.+|+.+++...|++.|+++.-...
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 355555 37799999999999999999985544
No 283
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=61.45 E-value=25 Score=36.82 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=40.2
Q ss_pred eEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEee-CCeeEEEEEEEcCCCCC
Q 013535 330 LELELCTEDRVGLLSDITRIFRENSLSIKRAEISTI-GGKVKDTFYVTDVTGNP 382 (441)
Q Consensus 330 ~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~-g~~~~d~F~v~d~~g~~ 382 (441)
+.|-++..|+||-|+++-+.|+++|||+.+.+..-. +...+=.|||.- +|..
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~-eg~~ 69 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF-DEAS 69 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE-ecCc
Confidence 566677799999999999999999999999887644 333455888853 3544
No 284
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=61.34 E-value=1.4e+02 Score=31.05 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=44.6
Q ss_pred CCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEE-eeC-CeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW-THN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 113 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~-T~~-~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
+.....+.+.-+||||-|.+++..+...+.||...+-. ..+ +...-.+-+.- .+++..+++.+.|.+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~-------~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIEL-------NDKEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 45778899999999999999999777777799865544 222 22222222222 135677888888765
No 285
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.90 E-value=75 Score=24.51 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=32.0
Q ss_pred EEEEE--E-eCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEe
Q 013535 117 TSIEF--T-GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (441)
Q Consensus 117 t~i~v--~-~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~ 164 (441)
+.|+| . .++.||++++|-.+|+++|+||..-. + ++ ..-.|.|..
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~ 48 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN 48 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec
Confidence 34566 2 47889999999999999999998774 2 22 444566554
No 286
>PRK08526 threonine dehydratase; Provisional
Probab=60.63 E-value=1.3e+02 Score=31.32 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=47.4
Q ss_pred cCCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEEeeCCe-----eEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 326 ASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEISTIGGK-----VKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 326 ~~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~-----~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
..+...+.|.-+||||-|.+++..+.+.+.||....-...... +.=.+-+.-. ++++.++|.+.|.+
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~-----~~~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK-----GKEHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 3456889999999999999999999999999998876543222 2212222211 34677788887765
No 287
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=60.59 E-value=1.3e+02 Score=34.30 Aligned_cols=101 Identities=9% Similarity=0.022 Sum_probs=65.1
Q ss_pred CCeEEEEEEec---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHH-hh
Q 013535 249 KDYTVITMRSK---DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAI-ER 324 (441)
Q Consensus 249 ~~~t~I~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L-~~ 324 (441)
.+.+.|+|.+. +.+|.++++..+|++.|++|.--...+ .+. .-.|.+.. ...+.+.+.|++.. ..
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~-s~~-sis~~i~~---------~~~~~~~~~l~~~~~~~ 383 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHP-DRQ-LLQLAYTS---------EVADSALKLLDDAALPG 383 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecC-CCc-EEEEEEeH---------HHHHHHHHHHHhhcCCC
Confidence 35667788765 788999999999999999986543222 222 22344331 12333344443321 00
Q ss_pred h---cCCceEEEEEeC---CccchHHHHHHHHHHCCceEEEE
Q 013535 325 R---ASEGLELELCTE---DRVGLLSDITRIFRENSLSIKRA 360 (441)
Q Consensus 325 r---~~~~~~ieV~~~---DrpGLL~~It~~l~~~~v~I~~A 360 (441)
+ ...-.+|.|.+. .+||+..++..+|.+.+|++.+.
T Consensus 384 ~i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 384 ELKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred cEEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 1 122456888875 68999999999999999999554
No 288
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=60.15 E-value=75 Score=24.24 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=39.4
Q ss_pred EEEEEEe---CCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 117 TSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 117 t~i~v~~---~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
+.|++.+ .+.||+++++..+|+++|+++..-. +.+ ..-.|.|.. .....+...+..+.+.|.+
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~--~~is~~v~~---~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSE--VSVSLTLDP---TKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCC--cEEEEEEEc---hhhccchHHHHHHHHHHHh
Confidence 3566643 5789999999999999999996553 322 334455544 1222222355666666665
No 289
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.64 E-value=55 Score=24.21 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=25.4
Q ss_pred EEEEEcc--CCCcHHHHHHHHHHhCCceEEEEEEEe
Q 013535 29 VIKVDSV--NKHGILLQVIQVLNDVNLVIKKAYISS 62 (441)
Q Consensus 29 ~v~V~~~--DrpGLf~~i~~~L~~~glnI~~A~i~t 62 (441)
.|.+.+. ..+|+++++..+|++.|++|.-....+
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3455544 458999999999999999998544433
No 290
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=59.47 E-value=90 Score=27.94 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=28.3
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceEEEE
Q 013535 251 YTVITMRSKDRPKLLFDIVCTLTDMQYVVFHG 282 (441)
Q Consensus 251 ~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A 282 (441)
...+.|.-+|+||-|..+.+=|+..|.||..-
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItI 36 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITI 36 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEE
Confidence 45678999999999999999999999999753
No 291
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.12 E-value=44 Score=26.20 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=36.0
Q ss_pred eCCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCC--hHHHHHHHHHhcc
Q 013535 336 TEDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVD--PKIIDSIRRQIGH 397 (441)
Q Consensus 336 ~~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~--~~~~~~l~~~l~~ 397 (441)
..+.||++++|-++|+++|+||.-.. + ++ ..=.|-+...+...+. .+.+.+|+++|++
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~sd~~~~~~~~~~l~~~~~~~~~ 70 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDPSKLWSRELIQQELDHVVEELEK 70 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence 35789999999999999999999874 2 33 3335555433221111 1244455555554
No 292
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=58.56 E-value=18 Score=25.10 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=25.9
Q ss_pred EEEEEeCC---CcchHHHHHHHHHhcCCeEEEEEE
Q 013535 118 SIEFTGTD---RPGLFSEVCAVLADLHCNVVNAEI 149 (441)
Q Consensus 118 ~i~v~~~D---rpGLl~~i~~~L~~~g~~I~~A~i 149 (441)
.|++.+.+ .+|.++++..+|+++|++|.....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 35566554 899999999999999999976643
No 293
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=58.42 E-value=74 Score=25.21 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=49.8
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 013535 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (441)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~--~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (441)
.+.+++.+.++|+.|.++-++-.-.|+.|-....++. ++.+.--|.|.. ..++ +.|...|++...
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s---~R~~------~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS---DRSV------DLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC---CCCh------HHHHHHHHHHcc
Confidence 5789999999999999999999999999988888775 566766676644 2333 556666665433
No 294
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=58.03 E-value=49 Score=28.89 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=39.8
Q ss_pred HHHHHHhCCceEEEEEEEecCCe-EEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--hcCCceEEEEEeC
Q 013535 268 IVCTLTDMQYVVFHGMVNTGRTE-AYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTE 337 (441)
Q Consensus 268 i~~~L~~~glnI~~A~i~t~~~~-~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~--r~~~~~~ieV~~~ 337 (441)
+...+..+|+.+.+..+...++. .+-+|. .. ++. ++ -+.++.+-..+...|.. ..+..|.+||+++
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~i-d~-~~g-v~-lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSP 70 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFI-DK-DGG-VS-LDDCEKVSRAISALLDAEDPIPEDYTLEVSSP 70 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEE-E--SS-----HHHHHHHHHHHGGGTTTS----S-EEEEEE--
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEE-Ee-CCC-CC-HHHHHHHHHHHHHHHccccccCcceEEEEeCC
Confidence 35678899999999999998764 444443 33 333 32 35777777777777754 3467899999975
No 295
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=57.16 E-value=65 Score=28.10 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=39.2
Q ss_pred CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEE
Q 013535 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIR 298 (441)
Q Consensus 250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~F~V~ 298 (441)
.-..+.+.-.||.|.|+++..++++.++||..-+-..- .|++--+..+.
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~ 120 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSID 120 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEE
Confidence 44568899999999999999999999999998766553 67776555543
No 296
>PRK08841 aspartate kinase; Validated
Probab=57.03 E-value=2.4e+02 Score=29.15 Aligned_cols=113 Identities=11% Similarity=0.218 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCcceeeeecCCCCeEE
Q 013535 39 GILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTS 118 (441)
Q Consensus 39 GLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~~v~~~~~~~~t~ 118 (441)
+..+++.+.|+++|+++.--. +...-+ .|.+.. ...+.++..+.. .+.. ..+...
T Consensus 266 ~~~~~i~~~l~~~~i~v~~i~--~~~~~~--~~~v~~---------~~~~~~~~~~~~----------~i~~--~~~~a~ 320 (392)
T PRK08841 266 ESLPSLTKQCQMLGIEVWNVI--EEADRA--QIVIKQ---------DACAKLKLVFDD----------KIRN--SESVSL 320 (392)
T ss_pred chHHHHHHHHHHcCCCEEEEE--ecCCcE--EEEECH---------HHHHHHHHhCcc----------cEEE--eCCEEE
Confidence 357899999999999887432 222111 244421 112222222211 0111 357788
Q ss_pred EEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 013535 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (441)
Q Consensus 119 i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (441)
|.++|...||+.+++..+|.+.|+||.... + ++ ..-.|.| + .+..++..+.|++.+.-
T Consensus 321 vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~--~-s~-~~is~vv-~---------~~~~~~av~~lH~~f~~ 378 (392)
T PRK08841 321 LTLVGLEANGMVEHACNLLAQNGIDVRQCS--T-EP-QSSMLVL-D---------PANVDRAANILHKTYVT 378 (392)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCCEEEEE--C-CC-cEEEEEE-e---------HHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999995544 2 22 3333433 3 23346666777766654
No 297
>PLN02828 formyltetrahydrofolate deformylase
Probab=56.88 E-value=1.4e+02 Score=29.25 Aligned_cols=103 Identities=11% Similarity=0.014 Sum_probs=56.0
Q ss_pred HHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCcce-eeeecCCCCeEEEE
Q 013535 44 VIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS-SVGVMPTEEHTSIE 120 (441)
Q Consensus 44 i~~~L~~~glnI~~A~i~t--~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~-~v~~~~~~~~t~i~ 120 (441)
+++.|+++|+||.+++.++ ..|.|+....+. .++...+.+++.+.+.. +..... +.- .+..........|-
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~-~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~ria 74 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFI-FDPVKWPRAQMDEDFQE-ISKHFK----ALKSVVRVPGLDPKYKIA 74 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEE-eCCCCCCHHHHHHHHHH-HHHhcC----CcceEEEEccCCCCcEEE
Confidence 4789999999999999997 446776554443 22322222223333322 222221 100 12221122234455
Q ss_pred EEeCCCcchHHHHHHHHHhcCCeEEEEEEEee
Q 013535 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (441)
Q Consensus 121 v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~ 152 (441)
|...-...-|.++......-.+++.=+-+.|.
T Consensus 75 vlvSg~g~nl~~ll~~~~~g~l~~eI~~ViSn 106 (268)
T PLN02828 75 VLASKQDHCLIDLLHRWQDGRLPVDITCVISN 106 (268)
T ss_pred EEEcCCChhHHHHHHhhhcCCCCceEEEEEeC
Confidence 55555666777777777777777666666664
No 298
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=56.76 E-value=67 Score=22.79 Aligned_cols=30 Identities=10% Similarity=0.268 Sum_probs=24.0
Q ss_pred EEEEc---cCCCcHHHHHHHHHHhCCceEEEEE
Q 013535 30 IKVDS---VNKHGILLQVIQVLNDVNLVIKKAY 59 (441)
Q Consensus 30 v~V~~---~DrpGLf~~i~~~L~~~glnI~~A~ 59 (441)
|++.+ ++.+|+++++.+.|++.|+++.-..
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 45543 5679999999999999999996443
No 299
>PRK14644 hypothetical protein; Provisional
Probab=53.63 E-value=1.1e+02 Score=26.71 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=47.5
Q ss_pred HHHHhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhh--hcCCceEEEEEeC--Ccc
Q 013535 270 CTLTDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIER--RASEGLELELCTE--DRV 340 (441)
Q Consensus 270 ~~L~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~--r~~~~~~ieV~~~--Drp 340 (441)
.++..+|+.+.+......++ +++-+|. |.. +-+.++.+-..|.+.|.. ..+..|.+||+++ |||
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~I--dk~-----~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRp 74 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVIL--NSR-----DLKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMD 74 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEEE--CCC-----CHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCC
Confidence 46788999999999998865 5554444 221 235788888888888863 3467899999965 888
No 300
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=53.48 E-value=58 Score=25.05 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=34.9
Q ss_pred CCccchHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcc
Q 013535 337 EDRVGLLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGH 397 (441)
Q Consensus 337 ~DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~ 397 (441)
.-.||++++|-+.|+++|+||.... + ++ ..=.|-+.. . .+.++.+++|.+.|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~--~-s~-~~isftv~~--~-~~~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIS--T-SE-VHVSMALHM--E-NAEDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeh--h-hcChHHHHHHHHHHHH
Confidence 3559999999999999999999874 2 33 222444422 2 2222355677776665
No 301
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.92 E-value=84 Score=22.63 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=27.7
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhcCCeEEEEEEEe
Q 013535 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWT 151 (441)
Q Consensus 118 ~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~i~T 151 (441)
.|.+.|. +.||+++++...|++.|+++......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4666764 789999999999999999998775433
No 302
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=52.62 E-value=85 Score=23.82 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=37.2
Q ss_pred EEEEE---ccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcc
Q 013535 29 VIKVD---SVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (441)
Q Consensus 29 ~v~V~---~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~ 96 (441)
.|++. ..+.+|+.+++..+|++.|++|.-....+.+. . -.|.+...+. .+..+.|.+.+..
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~-~-isf~v~~~d~-----~~~~~~l~~~~~~ 66 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEH-S-ISFVVDESDA-----DKALEALEEEFAL 66 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCcc-e-EEEEEeHHHH-----HHHHHHHHHHHHh
Confidence 45564 34778999999999999999998554433222 1 2356643221 2334556665533
No 303
>PRK08639 threonine dehydratase; Validated
Probab=52.22 E-value=89 Score=32.58 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=45.5
Q ss_pred CCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEe-eCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 112 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 112 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T-~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
.+.....+.+.-+||||-|.+++..+...+.||...+=.- .+.....++ +.-+ ..++++.+++.+.|.+
T Consensus 332 ~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~-v~iE-----~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 332 YEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVL-VGIE-----LKDAEDYDGLIERMEA 401 (420)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEE-EEEE-----eCCHHHHHHHHHHHHH
Confidence 4567889999999999999999996666666998875432 111111222 2221 1135677888888766
No 304
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=51.36 E-value=90 Score=22.47 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=27.9
Q ss_pred CCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEe
Q 013535 124 TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (441)
Q Consensus 124 ~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~ 164 (441)
.+++|+.+++-.+|+++|+++..-. | +. ..-.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence 4789999999999999999998773 3 22 334566654
No 305
>PRK11898 prephenate dehydratase; Provisional
Probab=51.07 E-value=98 Score=30.52 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=37.8
Q ss_pred eEEEEEEeCC-CcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEe
Q 013535 116 HTSIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTD 164 (441)
Q Consensus 116 ~t~i~v~~~D-rpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~ 164 (441)
.+.+.+.-++ +||.|+++-..|+.+|+|+..-..... +..+.=.|||.-
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~ 246 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV 246 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE
Confidence 4556556554 699999999999999999998887664 344666788865
No 306
>PRK14635 hypothetical protein; Provisional
Probab=50.90 E-value=1.1e+02 Score=27.47 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=56.6
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEcc---CCCCCCCHHHHHHHHHHHHHHHhhh-cCCceEEEEE
Q 013535 260 DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHV---DGLPISSEAERERVIQCLEAAIERR-ASEGLELELC 335 (441)
Q Consensus 260 DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~---~g~~i~~~~~~~~l~~~L~~~L~~r-~~~~~~ieV~ 335 (441)
+..-+-..+...+. .|+.+.+..+...++.-+-..+|... +|. + .-+.++.+-+.+.+.|... ....|.+||+
T Consensus 4 ~~~~i~~l~~~~~~-~g~el~dve~~~~~~~~~lrV~ID~~~~~~~g-v-~lddC~~vSr~is~~LD~~d~~~~Y~LEVS 80 (162)
T PRK14635 4 SEEEISEILDRVLA-LPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGS-V-SLLECEQVSRKLKEELERISPDLDFTLKVS 80 (162)
T ss_pred cHHHHHHHHHHHHC-CCCEEEEEEEEecCCCcEEEEEEecCCCCCCC-c-CHHHHHHHHHHHHHHhCCCCCCCCeEEEEc
Confidence 33344444555664 69999999999887643323444321 222 2 2357888888898888742 2358999999
Q ss_pred eC--CccchHHHHHHHHHHCCceE
Q 013535 336 TE--DRVGLLSDITRIFRENSLSI 357 (441)
Q Consensus 336 ~~--DrpGLL~~It~~l~~~~v~I 357 (441)
++ ||| |..--..-.-.|-.+
T Consensus 81 SPGldRp--L~~~~~~~r~~G~~v 102 (162)
T PRK14635 81 SAGAERK--LRLPEDLDRFRGIPV 102 (162)
T ss_pred CCCCCCc--CCCHHHHHHhCCCEE
Confidence 75 555 444444444445444
No 307
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.85 E-value=1.1e+02 Score=23.54 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=37.7
Q ss_pred CCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 124 TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 124 ~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
++.||+++++-.+|+++|+||..-. + +. ..-.|.|.. .. ..+. .+.+++|.+.|.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~-~~-~~~~-~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDP-DP-NGLD-PDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeC-cc-cccc-hHHHHHHHHHHHh
Confidence 5789999999999999999998774 2 22 334555554 11 1132 2356777777765
No 308
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=50.69 E-value=1e+02 Score=32.02 Aligned_cols=37 Identities=11% Similarity=-0.024 Sum_probs=31.0
Q ss_pred CCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEE
Q 013535 249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN 285 (441)
Q Consensus 249 ~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 285 (441)
.....+.|.-|||||-|.+++..+...+.||..-+-.
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 5667899999999999999999777777799965544
No 309
>PRK08841 aspartate kinase; Validated
Probab=49.65 E-value=79 Score=32.75 Aligned_cols=95 Identities=14% Similarity=0.252 Sum_probs=59.2
Q ss_pred CCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q 013535 249 KDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASE 328 (441)
Q Consensus 249 ~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~~~ 328 (441)
.+.+.|++.+ +.+.++...|+++|+++..-. +....+ .|.|.. ..++.++..+.+.+ .....
T Consensus 256 ~~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~--~~~~~~--~~~v~~---------~~~~~~~~~~~~~i-~~~~~ 317 (392)
T PRK08841 256 RDLALIEVES----ESLPSLTKQCQMLGIEVWNVI--EEADRA--QIVIKQ---------DACAKLKLVFDDKI-RNSES 317 (392)
T ss_pred CCeEEEEecc----chHHHHHHHHHHcCCCEEEEE--ecCCcE--EEEECH---------HHHHHHHHhCcccE-EEeCC
Confidence 4566777754 357899999999999887442 222111 244421 22333321111100 01123
Q ss_pred ceEEEEEeCCccchHHHHHHHHHHCCceEEEEE
Q 013535 329 GLELELCTEDRVGLLSDITRIFRENSLSIKRAE 361 (441)
Q Consensus 329 ~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~ 361 (441)
-..|.+.+...||+.+++.++|.+.|+||....
T Consensus 318 ~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~ 350 (392)
T PRK08841 318 VSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS 350 (392)
T ss_pred EEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 467999999999999999999999999995544
No 310
>PRK14641 hypothetical protein; Provisional
Probab=49.25 E-value=1.5e+02 Score=27.01 Aligned_cols=76 Identities=9% Similarity=0.024 Sum_probs=49.4
Q ss_pred HhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhh--c----CCceEEEEEeC--CccchH
Q 013535 273 TDMQYVVFHGMVNTGRT-EAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERR--A----SEGLELELCTE--DRVGLL 343 (441)
Q Consensus 273 ~~~glnI~~A~i~t~~~-~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r--~----~~~~~ieV~~~--DrpGLL 343 (441)
..+|+.+.+..+...++ +.+-+ +| |.+|. + .-+.++.+-..|.+.|... . ...|.+||+++ ||| |
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lrV-~I-D~~~g-v-~lDdC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSSPGldRp--L 93 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIEV-LL-DADTG-I-RIDQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGLGEP--I 93 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEEE-EE-eCCCC-C-CHHHHHHHHHHHHHHhCcccccccCCCCCeEEEEeCCCCCCc--C
Confidence 48999999999988764 55544 33 33333 2 2358888888998888643 2 25899999975 555 4
Q ss_pred HHHHHHHHHCC
Q 013535 344 SDITRIFRENS 354 (441)
Q Consensus 344 ~~It~~l~~~~ 354 (441)
...-.+-.-.|
T Consensus 94 ~~~~~f~r~~G 104 (173)
T PRK14641 94 ILPRQYGRHVG 104 (173)
T ss_pred CCHHHHHHhCC
Confidence 44444444444
No 311
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=48.98 E-value=91 Score=21.84 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=26.2
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhcCCeEEEEEE
Q 013535 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEI 149 (441)
Q Consensus 118 ~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~i 149 (441)
.|++.+. +.+|+++++...|+++++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566554 8899999999999999999976643
No 312
>PLN02317 arogenate dehydratase
Probab=47.90 E-value=1.3e+02 Score=31.10 Aligned_cols=49 Identities=27% Similarity=0.259 Sum_probs=39.2
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCe---------------EEEEEEEEe
Q 013535 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR---------------AAAVVHVTD 164 (441)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~---------------~~dvF~V~~ 164 (441)
.|.|.+.-+|+||.|+++-.+|+.+|+|+..-........ +.=.|||.-
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~ 346 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDF 346 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEE
Confidence 5777777799999999999999999999998876654332 455788865
No 313
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=47.19 E-value=3e+02 Score=29.46 Aligned_cols=66 Identities=17% Similarity=0.323 Sum_probs=43.7
Q ss_pred CCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 113 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
+.....+.|.-+||||-|.+++.+|.. .||...+=.-.+....-+|.... +.+++..++|.+.|.+
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie------~~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQ------LSNPQERQEILARLND 387 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 456788889999999999999999997 46655543322222233332222 1135677888888866
No 314
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.12 E-value=1.2e+02 Score=22.24 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=22.5
Q ss_pred EEEEEeC---CCcchHHHHHHHHHhcCCeE
Q 013535 118 SIEFTGT---DRPGLFSEVCAVLADLHCNV 144 (441)
Q Consensus 118 ~i~v~~~---DrpGLl~~i~~~L~~~g~~I 144 (441)
.|.++|. +.||+++++..+|.+.|+++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4677775 67999999999999987776
No 315
>PRK08639 threonine dehydratase; Validated
Probab=44.59 E-value=1.4e+02 Score=31.02 Aligned_cols=38 Identities=11% Similarity=-0.074 Sum_probs=31.2
Q ss_pred CCCeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEE
Q 013535 248 EKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVN 285 (441)
Q Consensus 248 ~~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~ 285 (441)
+.....+.+.-|||||-|.+++..+...+.||..-+-.
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 35667899999999999999999777777799876544
No 316
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=44.07 E-value=1.4e+02 Score=31.49 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=46.3
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee-CCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~-~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
.+.|.+..+|+||-|+++-.+|+.+|+|+..-..... .....=.|+|.- .|.. + ..+..+-+.|..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~--eg~~--~-~~v~~aL~~Lk~ 82 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF--DEAS--D-RKLEGVIEHLRQ 82 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE--ecCc--c-HHHHHHHHHHHH
Confidence 5777777799999999999999999999988776653 334556788866 2432 2 334444444444
No 317
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.94 E-value=1.1e+02 Score=22.47 Aligned_cols=28 Identities=7% Similarity=0.033 Sum_probs=22.1
Q ss_pred EEEEEcc---CCCcHHHHHHHHHHhCCceEE
Q 013535 29 VIKVDSV---NKHGILLQVIQVLNDVNLVIK 56 (441)
Q Consensus 29 ~v~V~~~---DrpGLf~~i~~~L~~~glnI~ 56 (441)
.|.+.+. +.+|+.+++..+|.+.|+++.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE
Confidence 3556664 679999999999999877763
No 318
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=42.53 E-value=1.2e+02 Score=21.39 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=25.4
Q ss_pred EEEEEe---CCCcchHHHHHHHHHhcCCeEEEEE
Q 013535 118 SIEFTG---TDRPGLFSEVCAVLADLHCNVVNAE 148 (441)
Q Consensus 118 ~i~v~~---~DrpGLl~~i~~~L~~~g~~I~~A~ 148 (441)
.|++.+ .+.||+++++...|++.|+++....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 355654 4779999999999999999997665
No 319
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=41.86 E-value=44 Score=25.12 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=25.5
Q ss_pred EEEEEe-CCCcchHHHHHHHHHhcCCeEEEE
Q 013535 118 SIEFTG-TDRPGLFSEVCAVLADLHCNVVNA 147 (441)
Q Consensus 118 ~i~v~~-~DrpGLl~~i~~~L~~~g~~I~~A 147 (441)
.|+|.+ ++.||.+++|-+.|+++|+||.--
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 455665 466999999999999999999888
No 320
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.63 E-value=1.2e+02 Score=21.30 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=25.4
Q ss_pred EEEEEe---CCCcchHHHHHHHHHhcCCeEEEEE
Q 013535 118 SIEFTG---TDRPGLFSEVCAVLADLHCNVVNAE 148 (441)
Q Consensus 118 ~i~v~~---~DrpGLl~~i~~~L~~~g~~I~~A~ 148 (441)
.|++.+ .+.||+++++...|+++|+++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 355654 4779999999999999999997765
No 321
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=41.61 E-value=45 Score=25.04 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=30.2
Q ss_pred EEEEE-ccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 013535 29 VIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVID 75 (441)
Q Consensus 29 ~v~V~-~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~ 75 (441)
.|+|. .++.||..+++.+.|+++|+||-=-..+ ... -+|.+..
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~-~~~---isFtv~~ 46 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS-PEE---VIFTVDG 46 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec-CCC---EEEEEch
Confidence 45566 4566999999999999999999865322 222 3477643
No 322
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=41.32 E-value=81 Score=23.51 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=24.3
Q ss_pred EEEEEcc--CCCcHHHHHHHHHHhCCceEEEEE
Q 013535 29 VIKVDSV--NKHGILLQVIQVLNDVNLVIKKAY 59 (441)
Q Consensus 29 ~v~V~~~--DrpGLf~~i~~~L~~~glnI~~A~ 59 (441)
.|.+.+. .++|+.+++..+|++.|+++.-..
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~ 36 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAH 36 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEE
Confidence 4566654 258999999999999999998443
No 323
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.84 E-value=68 Score=22.75 Aligned_cols=31 Identities=10% Similarity=0.295 Sum_probs=25.5
Q ss_pred EEEEEe---CCccchHHHHHHHHHHCCceEEEEE
Q 013535 331 ELELCT---EDRVGLLSDITRIFRENSLSIKRAE 361 (441)
Q Consensus 331 ~ieV~~---~DrpGLL~~It~~l~~~~v~I~~A~ 361 (441)
.|.|.+ .+.||++.++...|.+.++++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 355654 3679999999999999999997775
No 324
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=39.77 E-value=82 Score=23.64 Aligned_cols=32 Identities=3% Similarity=0.238 Sum_probs=23.2
Q ss_pred HHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 013535 45 IQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC 76 (441)
Q Consensus 45 ~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~ 76 (441)
...+..+|..+..=.+.|.|||.+..+.+...
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~ 33 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPG 33 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SB
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCC
Confidence 45678899999999999999999999998543
No 325
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=38.28 E-value=1.7e+02 Score=22.03 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=27.0
Q ss_pred EEEEEEe---CCCcchHHHHHHHHHhcCCeEEEEEEE
Q 013535 117 TSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIW 150 (441)
Q Consensus 117 t~i~v~~---~DrpGLl~~i~~~L~~~g~~I~~A~i~ 150 (441)
+.|++.+ .+.+|+++++..+|+++|+++......
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 3466654 478999999999999999999776543
No 326
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=37.98 E-value=1.4e+02 Score=31.53 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=39.7
Q ss_pred CCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEeeC-CeEE-EEEEEEe
Q 013535 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAA-AVVHVTD 164 (441)
Q Consensus 114 ~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~-~~~~-dvF~V~~ 164 (441)
...+.|.+..+|+||-|+++-.+|+.+|+|+..-...... .... -.|+|.-
T Consensus 29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 4567777777999999999999999999999887766543 3344 5677765
No 327
>PRK14646 hypothetical protein; Provisional
Probab=36.67 E-value=3.1e+02 Score=24.46 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcccccccccccCCCC-----CCCCCC
Q 013535 342 LLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAP-----KPPKET 416 (441)
Q Consensus 342 LL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~~~~ 416 (441)
+...+..++.++|+.+........|....=..||....|..++=...+.+.+++.. +|++.+ .++.. ||||.+
T Consensus 9 i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~-~LD~~D-~i~~~Y~LEVSSPGld 86 (155)
T PRK14646 9 LEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASE-EIENSN-LLNCSYVLEISSQGVS 86 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHH-HhCcCC-CCCCCeEEEEcCCCCC
Confidence 44567778899999999999998877665567784444555665567777777777 665433 22222 788854
No 328
>PRK14634 hypothetical protein; Provisional
Probab=36.26 E-value=3e+02 Score=24.60 Aligned_cols=74 Identities=9% Similarity=0.087 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcccccccccccCCCC-----CCCCCC
Q 013535 342 LLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAP-----KPPKET 416 (441)
Q Consensus 342 LL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~~~~ 416 (441)
+-.-+..++.++|+.+....+...|....=..||....|..++=..++.+.+++.. +|++.+. ++.+ ||||.+
T Consensus 9 i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~-~LD~~d~-i~~~Y~LEVSSPGld 86 (155)
T PRK14634 9 LETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGE-ALEASQL-LTEAYVLEISSPGIG 86 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHH-Hhccccc-CCCCeEEEEeCCCCC
Confidence 33455667889999999999988876655566685556655665677888888877 6665432 2222 788854
Q ss_pred C
Q 013535 417 T 417 (441)
Q Consensus 417 ~ 417 (441)
.
T Consensus 87 R 87 (155)
T PRK14634 87 D 87 (155)
T ss_pred C
Confidence 3
No 329
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=35.69 E-value=2e+02 Score=22.03 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=36.0
Q ss_pred CCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Q 013535 124 TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (441)
Q Consensus 124 ~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (441)
...||+++++-.+|+++|+||.--- + ++ ..-.|.+.. ..+. .+.++.|.+.|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~--~-s~-~~isftv~~----~~~~-~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIS--T-SE-VHVSMALHM----ENAE-DTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeh----hhcC-hHHHHHHHHHHHH
Confidence 3568999999999999999998764 2 22 333455543 2232 2366777777765
No 330
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=33.06 E-value=2.5e+02 Score=32.75 Aligned_cols=78 Identities=13% Similarity=0.005 Sum_probs=54.8
Q ss_pred CCEEEEEc-C-CCCeEEEEE---EecCCcchHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEEccCCCCCCCHHHHH
Q 013535 239 RPQVTVLN-I-EKDYTVITM---RSKDRPKLLFDIVCTLTDMQYVVFHGMVNTG-RTEAYQEFYIRHVDGLPISSEAERE 312 (441)
Q Consensus 239 ~~~V~v~~-~-~~~~t~I~V---~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~F~V~~~~g~~i~~~~~~~ 312 (441)
-|.+.+.. . +.....+.+ ..+...|+|..++..+..+|+.+..+.+.+. +|..+-+|||+...+....+...++
T Consensus 216 g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~~~~~~~ 295 (1002)
T PTZ00324 216 GPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNPDLSIED 295 (1002)
T ss_pred CCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCCCcccccHHH
Confidence 36666666 4 323333444 5677889999999999999999999999998 6778889999987665322222344
Q ss_pred HHHH
Q 013535 313 RVIQ 316 (441)
Q Consensus 313 ~l~~ 316 (441)
.++.
T Consensus 296 ~~~~ 299 (1002)
T PTZ00324 296 RASL 299 (1002)
T ss_pred HHHh
Confidence 4443
No 331
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=32.62 E-value=1.3e+02 Score=28.72 Aligned_cols=101 Identities=16% Similarity=0.220 Sum_probs=59.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHhCCceEEE----EEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCC
Q 013535 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKK----AYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (441)
Q Consensus 27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~----A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~ 102 (441)
...|.+.+.|+......|-.+|..+|.++-. ..+|...|.+ .+... + .. ..+.++.+|.....
T Consensus 92 aiive~lTDN~nRt~~~ir~~~~K~gg~l~~~gsv~~~F~~kG~i----~~~~~-~--~~---~d~~~e~aIe~Gae--- 158 (234)
T PF01709_consen 92 AIIVECLTDNKNRTVSDIRSIFKKNGGSLGPSGSVSFMFERKGVI----EVSKK-D--LD---EDELMEDAIEAGAE--- 158 (234)
T ss_dssp EEEEEEEES-HHHHHHHHHHHHHTTT-EEE-TTSSGGGEEEEEEE----EEEHC-C--S----HHHHHHHHHHHTES---
T ss_pred EEEEEEeCCCHhHHHHHHHHHHHHcCceeCCCCcceeeeeeeEEE----EEEeC-C--CC---hHHHHHHHHhCCCc---
Confidence 3578888999999999999999999998775 3334444433 33221 1 11 12333444433221
Q ss_pred CcceeeeecCCCCeEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEE
Q 013535 103 SLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (441)
Q Consensus 103 ~~~~~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~ 150 (441)
-|. .+.+. +.++| .|.-|..+...|...|+.|.++.+.
T Consensus 159 ----Dve--~~d~~--~~~~c--~p~~~~~v~~~L~~~g~~i~~~e~~ 196 (234)
T PF01709_consen 159 ----DVE--EDDGE--FEFIC--DPSDLSAVKKALEKKGYEIESAELE 196 (234)
T ss_dssp ----EEE--ECTSE--EEEEE--EGGGHHHHHHHHHHTT---SEEEEE
T ss_pred ----Eee--ecCCe--EEEEE--CHHHHHHHHHHHHHcCCCeeEEEEE
Confidence 011 12233 44444 4788999999999999999988875
No 332
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=32.28 E-value=52 Score=35.39 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=32.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee
Q 013535 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (441)
Q Consensus 118 ~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~ 152 (441)
.++|.+.||.|+..+|...|..+++|+....|...
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~ 36 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI 36 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC
Confidence 47899999999999999999999999999999764
No 333
>PRK02001 hypothetical protein; Validated
Probab=32.26 E-value=3.1e+02 Score=24.47 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=43.7
Q ss_pred HHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhcCCceEEEEEeC--Ccc
Q 013535 269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTE--DRV 340 (441)
Q Consensus 269 ~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~~~~~~ieV~~~--Drp 340 (441)
..++..+|+.+.+..+... ..+-+ +| |.++. + .-+.++.+-..|...|... ...|.+||+++ |||
T Consensus 12 e~~~~~~g~eLvdv~~~~~--~~lrV-~I-D~~~G-v-~lddC~~vSr~is~~LD~~-d~~Y~LEVSSPGldRp 78 (152)
T PRK02001 12 EELLEGPELFLVDLTISPD--NKIVV-EI-DGDEG-V-WIEDCVELSRAIEHNLDRE-EEDFELEVGSAGLTSP 78 (152)
T ss_pred HhhhhhcCcEEEEEEEEcC--CEEEE-EE-ECCCC-C-CHHHHHHHHHHHHHHhcCC-CCCeEEEEeCCCCCCc
Confidence 3567789999999988753 22333 33 33332 2 2358888988898888643 47899999975 555
No 334
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.98 E-value=2.1e+02 Score=21.03 Aligned_cols=35 Identities=11% Similarity=-0.012 Sum_probs=26.0
Q ss_pred EEEEEec--CCcchHHHHHHHHHhCCceEEEEEEEec
Q 013535 253 VITMRSK--DRPKLLFDIVCTLTDMQYVVFHGMVNTG 287 (441)
Q Consensus 253 ~I~V~~~--DrpGLl~~i~~~L~~~glnI~~A~i~t~ 287 (441)
.|.+.+. ..+|++.++..+|++.|++|......+.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 3455554 4689999999999999999976544443
No 335
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.39 E-value=51 Score=25.87 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=28.1
Q ss_pred CCCcchHHHHHHHHHhcCCeEEEEEEEeeCCeEEEEEEEEe
Q 013535 124 TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (441)
Q Consensus 124 ~DrpGLl~~i~~~L~~~g~~I~~A~i~T~~~~~~dvF~V~~ 164 (441)
++.||.+++|-.+|+++|+||.--. + ++ ..-.|.|..
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~ 48 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDP 48 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEh
Confidence 6889999999999999999998773 3 22 334555544
No 336
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=31.08 E-value=2.5e+02 Score=24.13 Aligned_cols=38 Identities=16% Similarity=0.310 Sum_probs=30.5
Q ss_pred cCCCCeEEEEEEeC---CCcchHHHHHHHHHhcCCeEEEEE
Q 013535 111 MPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE 148 (441)
Q Consensus 111 ~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~g~~I~~A~ 148 (441)
+.+.+...+.+.++ |-+|+|+.|.+.|+++|+.|.--.
T Consensus 58 ~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavS 98 (128)
T COG3603 58 QIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVS 98 (128)
T ss_pred EecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEE
Confidence 34556667777665 899999999999999999997654
No 337
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=29.85 E-value=2.1e+02 Score=22.71 Aligned_cols=51 Identities=6% Similarity=-0.085 Sum_probs=36.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 013535 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (441)
Q Consensus 25 ~~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~ 81 (441)
.....+.+...| +......|...|++|...-....++. ..|++.||+|+.+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 455677888887 67777888899999986644333222 3588889999854
No 338
>PRK00907 hypothetical protein; Provisional
Probab=29.56 E-value=2.1e+02 Score=23.29 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=46.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEE----ecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccC
Q 013535 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS----SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDA 98 (441)
Q Consensus 28 ~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~----t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~ 98 (441)
.-+.|.|.+++++-..|..++..+.-+.-...+. +.|.|..-++.|... + .+.++.|-+.|....
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at-s-----~eQld~iY~~L~~~~ 86 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE-S-----REQYDAAHQALRDHP 86 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC-C-----HHHHHHHHHHHhhCC
Confidence 6789999999999999999999998777666664 345565555555332 2 345677777776543
No 339
>PRK14630 hypothetical protein; Provisional
Probab=28.57 E-value=3.9e+02 Score=23.50 Aligned_cols=42 Identities=7% Similarity=0.094 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCC
Q 013535 36 NKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDG 78 (441)
Q Consensus 36 DrpGLf~~i~~~L~~~glnI~~A~i~t~-~g~~~d~f~V~~~~g 78 (441)
|..-+...+..++..+|+.+.+...... +++.+-+| +..+.|
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~-Id~~~g 48 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIV-LYKKDS 48 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEE-EECCCC
Confidence 4445777888999999999999998764 45666444 433445
No 340
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=26.69 E-value=7.8e+02 Score=26.01 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=61.1
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhcCCceEEEEEeCCcc
Q 013535 261 RPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRV 340 (441)
Q Consensus 261 rpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~~~~~~ieV~~~Drp 340 (441)
.+..+.+++..+.++|++. +.+.|..|.. .+....++..+|.+.+ ...|++.+.|-.
T Consensus 152 ~~~~~~~~a~~l~~~Gad~---------------I~i~Dt~G~l--~P~~v~~lv~alk~~~------~~pi~~H~Hnt~ 208 (448)
T PRK12331 152 TIDYFVKLAKEMQEMGADS---------------ICIKDMAGIL--TPYVAYELVKRIKEAV------TVPLEVHTHATS 208 (448)
T ss_pred CHHHHHHHHHHHHHcCCCE---------------EEEcCCCCCC--CHHHHHHHHHHHHHhc------CCeEEEEecCCC
Confidence 3467788888888888754 5667766653 2345666666665432 257999999999
Q ss_pred chHHHHHHHHHHCCceEEEEEEEeeCCe
Q 013535 341 GLLSDITRIFRENSLSIKRAEISTIGGK 368 (441)
Q Consensus 341 GLL~~It~~l~~~~v~I~~A~i~T~g~~ 368 (441)
|+=-.=+-+-.+.|+++..+.+.-.|++
T Consensus 209 GlA~AN~laAieaGad~vD~sv~glg~g 236 (448)
T PRK12331 209 GIAEMTYLKAIEAGADIIDTAISPFAGG 236 (448)
T ss_pred CcHHHHHHHHHHcCCCEEEeeccccCCC
Confidence 9865555555689999999999988776
No 341
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=26.46 E-value=2.3e+02 Score=22.46 Aligned_cols=50 Identities=6% Similarity=-0.073 Sum_probs=35.6
Q ss_pred CeEEEEEEecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCC
Q 013535 250 DYTVITMRSKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPI 305 (441)
Q Consensus 250 ~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i 305 (441)
....+.+...| +......|..+|+++........++. ..|++.|++|..+
T Consensus 61 ~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 61 PGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 45567778888 66777888899999887644333222 4699999999864
No 342
>PRK14645 hypothetical protein; Provisional
Probab=26.22 E-value=4.7e+02 Score=23.31 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcccccccccccCCCC-----CCCCCC
Q 013535 342 LLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAP-----KPPKET 416 (441)
Q Consensus 342 LL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~~~~ 416 (441)
+-..+..++.++|+.+...++...|..-.=..||....|..++=..++++.+++.. +|++.+. ++.. ||||.+
T Consensus 11 i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~-~LD~~d~-i~~~Y~LEVSSPGld 88 (154)
T PRK14645 11 LQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEA-ELDRLDP-IEGEYRLEVESPGPK 88 (154)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHH-Hhccccc-CCCceEEEEeCCCCC
Confidence 44556778899999999999987775544455574334556665677788888877 5554332 2122 788754
Q ss_pred C
Q 013535 417 T 417 (441)
Q Consensus 417 ~ 417 (441)
-
T Consensus 89 R 89 (154)
T PRK14645 89 R 89 (154)
T ss_pred C
Confidence 3
No 343
>PRK00907 hypothetical protein; Provisional
Probab=25.77 E-value=3.3e+02 Score=22.16 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=44.8
Q ss_pred eEEEEEEeCCCcchHHHHHHHHHhcCCeEEEEEEEee---CCe-EEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Q 013535 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH---NDR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (441)
Q Consensus 116 ~t~i~v~~~DrpGLl~~i~~~L~~~g~~I~~A~i~T~---~~~-~~dvF~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (441)
.+.|-|.|.+++++...|..++..+.-......+... +|+ ..-.+.|.-. +.++++.|=++|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at-------s~eQld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE-------SREQYDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 5889999999999999999999999887777776542 344 3445555441 2456666655553
No 344
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=24.82 E-value=1.6e+02 Score=23.56 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=34.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 013535 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (441)
Q Consensus 26 ~~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~ 81 (441)
+...+.+...|...+ ..+...+..+|.+|...-.....|+ .+++.||+|+.+
T Consensus 59 ~~~~~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPdGn~i 110 (114)
T cd07261 59 GGSELAFMVDDGAAV-DALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPDGHRL 110 (114)
T ss_pred CceEEEEEcCCHHHH-HHHHHHHHHCCCeEecCccccCCcc---EEEEECCCCCEE
Confidence 445677777764444 5666677789999986433333354 367889999854
No 345
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=24.48 E-value=2.2e+02 Score=21.28 Aligned_cols=33 Identities=12% Similarity=-0.107 Sum_probs=24.0
Q ss_pred HHHHHhCCceEEEEEEEecCCeEEEEEEEEccC
Q 013535 269 VCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVD 301 (441)
Q Consensus 269 ~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~ 301 (441)
...+...|+.+..=.+.|.||+++..|.+....
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 345778999999999999999999999987655
No 346
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=24.12 E-value=9.4e+02 Score=26.45 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=65.8
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhcCCceEEEEEeCCc
Q 013535 260 DRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDR 339 (441)
Q Consensus 260 DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~~~~~~ieV~~~Dr 339 (441)
+-+..+.++++.+.++|+++ +++.|..|.. .+....+|..+|.+.+ ...|++.+.|.
T Consensus 152 ~~~~~~~~~a~~l~~~Gad~---------------i~i~Dt~G~l--~P~~~~~lv~~lk~~~------~~pi~~H~Hnt 208 (593)
T PRK14040 152 HTLQTWVDLAKQLEDMGVDS---------------LCIKDMAGLL--KPYAAYELVSRIKKRV------DVPLHLHCHAT 208 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCE---------------EEECCCCCCc--CHHHHHHHHHHHHHhc------CCeEEEEECCC
Confidence 44678888888888888754 5667777753 2346666666665543 25699999999
Q ss_pred cchHHHHHHHHHHCCceEEEEEEEeeCCee
Q 013535 340 VGLLSDITRIFRENSLSIKRAEISTIGGKV 369 (441)
Q Consensus 340 pGLL~~It~~l~~~~v~I~~A~i~T~g~~~ 369 (441)
.|+=..=+-+-.+.|+++....++-.|+++
T Consensus 209 ~GlA~An~laAieAGa~~vD~ai~glG~~~ 238 (593)
T PRK14040 209 TGLSTATLLKAIEAGIDGVDTAISSMSMTY 238 (593)
T ss_pred CchHHHHHHHHHHcCCCEEEeccccccccc
Confidence 999777677777999999999999999874
No 347
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=23.99 E-value=5e+02 Score=22.89 Aligned_cols=90 Identities=6% Similarity=0.033 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCcceeeeecCCCCeEE
Q 013535 40 ILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTS 118 (441)
Q Consensus 40 Lf~~i~~~L~~~glnI~~A~i~t~-~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~~v~~~~~~~~t~ 118 (441)
+-..+..++..+|+.+.+..+... ++..+-+ .|..+.| ++ -+.++.+-+.+...++.. ++-.+.+.
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V-~Id~~~g--v~-iddc~~~Sr~is~~LD~~---------d~i~~~Y~ 75 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRI-YIDKEGG--ID-LDDCEEVSRQISAVLDVE---------DPIPGAYT 75 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEE-EEECCCC--CC-HHHHHHHHHHHHHHhccc---------cCCCCCeE
Confidence 556678889999999999999874 4555544 3422334 22 223444444444333210 01224567
Q ss_pred EEEEeCCCcchHHHHHHHHHhcCC
Q 013535 119 IEFTGTDRPGLFSEVCAVLADLHC 142 (441)
Q Consensus 119 i~v~~~DrpGLl~~i~~~L~~~g~ 142 (441)
++|.+|.----|...-..-...|-
T Consensus 76 LEVSSPGi~RpL~~~~~f~r~~G~ 99 (154)
T PRK00092 76 LEVSSPGLDRPLKKARDFRRFIGR 99 (154)
T ss_pred EEEeCCCCCCcCCCHHHHHHhCCC
Confidence 777776444444444444444443
No 348
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=23.71 E-value=4.2e+02 Score=22.90 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=36.5
Q ss_pred HHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhccccccc
Q 013535 346 ITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQV 402 (441)
Q Consensus 346 It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~~~~ 402 (441)
|...+.++|+.+...++...+....=..+|.. ++. ++=..++++.+++.. .|++
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~-~~g-v~lddc~~~sr~i~~-~LD~ 55 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDK-DGG-VSLDDCEKVSRAISA-LLDA 55 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE--SS----HHHHHHHHHHHGG-GTTT
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEe-CCC-CCHHHHHHHHHHHHH-HHcc
Confidence 45678899999999999999877555555643 344 665678888888888 6665
No 349
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.66 E-value=6.3e+02 Score=24.51 Aligned_cols=85 Identities=21% Similarity=0.282 Sum_probs=58.9
Q ss_pred CcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhcCCceEEEEEeCCcc
Q 013535 261 RPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTEDRV 340 (441)
Q Consensus 261 rpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~~~~~~ieV~~~Drp 340 (441)
-+..+.+++..+.+.|.+ .+++.|..|... |.....+-..|.+.+ + ..+++.+.|..
T Consensus 147 ~~~~~~~~~~~~~~~Ga~---------------~i~l~DT~G~~~--P~~v~~lv~~l~~~~----~--~~l~~H~Hnd~ 203 (275)
T cd07937 147 TLEYYVKLAKELEDMGAD---------------SICIKDMAGLLT--PYAAYELVKALKKEV----G--LPIHLHTHDTS 203 (275)
T ss_pred CHHHHHHHHHHHHHcCCC---------------EEEEcCCCCCCC--HHHHHHHHHHHHHhC----C--CeEEEEecCCC
Confidence 345666666666666654 366677777642 345555555554432 2 57999999999
Q ss_pred chHHHHHHHHHHCCceEEEEEEEeeCCe
Q 013535 341 GLLSDITRIFRENSLSIKRAEISTIGGK 368 (441)
Q Consensus 341 GLL~~It~~l~~~~v~I~~A~i~T~g~~ 368 (441)
|+=..=+-+-.+.|+++..+.+.-.|++
T Consensus 204 GlA~aN~laA~~aGa~~vd~sv~GlG~~ 231 (275)
T cd07937 204 GLAVATYLAAAEAGVDIVDTAISPLSGG 231 (275)
T ss_pred ChHHHHHHHHHHhCCCEEEEecccccCC
Confidence 9966666666688999999999989987
No 350
>PRK14636 hypothetical protein; Provisional
Probab=23.09 E-value=5.8e+02 Score=23.27 Aligned_cols=74 Identities=9% Similarity=0.013 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHCCceEEEEEEEeeCCeeEEEEEEEcCCCCCCChHHHHHHHHHhcccccccccccCCCC-----CCCCCC
Q 013535 342 LLSDITRIFRENSLSIKRAEISTIGGKVKDTFYVTDVTGNPVDPKIIDSIRRQIGHTKLQVKRSTILAP-----KPPKET 416 (441)
Q Consensus 342 LL~~It~~l~~~~v~I~~A~i~T~g~~~~d~F~v~d~~g~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~~~~ 416 (441)
+-..+..++.++|+.+....+...+....=..||....|..++=..++.+.+++.. +|++.+ .++-. ||||.+
T Consensus 7 i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~-~LD~~d-~i~~~Y~LEVSSPGld 84 (176)
T PRK14636 7 LTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSD-VFDELD-PIEDAYRLEVSSPGID 84 (176)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHH-HhccCc-CCCCCeEEEEeCCCCC
Confidence 45567778899999999999887776655556675444445665567788887777 555422 12222 788754
Q ss_pred C
Q 013535 417 T 417 (441)
Q Consensus 417 ~ 417 (441)
.
T Consensus 85 R 85 (176)
T PRK14636 85 R 85 (176)
T ss_pred C
Confidence 3
No 351
>PRK05925 aspartate kinase; Provisional
Probab=22.84 E-value=9e+02 Score=25.41 Aligned_cols=101 Identities=16% Similarity=0.074 Sum_probs=60.9
Q ss_pred EEEEEEcc-CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCCCCcce
Q 013535 28 TVIKVDSV-NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS 106 (441)
Q Consensus 28 ~~v~V~~~-DrpGLf~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~ 106 (441)
+.|++.+. ...|.++++.+.|+++|++|.-.. ++.. --.|.+...+. . ....+.|...+....
T Consensus 301 ~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i~-s~~~---sis~~i~~~~~---~-~~~~~~l~~~l~~~~-------- 364 (440)
T PRK05925 301 ALWSVDYNSLGLVRLEDVLGILRSLGIVPGLVM-AQNL---GVYFTIDDDDI---S-EEYPQHLTDALSAFG-------- 364 (440)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCCcEEEEe-ccCC---EEEEEEechhc---c-HHHHHHHHHHhcCCc--------
Confidence 34555422 246778999999999999996331 1222 22356643221 1 123333433333211
Q ss_pred eeeecCCCCeEEEEEEeC--CCcchHHHHHHHHHhcCCeEEE
Q 013535 107 SVGVMPTEEHTSIEFTGT--DRPGLFSEVCAVLADLHCNVVN 146 (441)
Q Consensus 107 ~v~~~~~~~~t~i~v~~~--DrpGLl~~i~~~L~~~g~~I~~ 146 (441)
.+. ...+...|.|+|. -.+|+++++..+|++.|+||..
T Consensus 365 ~i~--~~~~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~ 404 (440)
T PRK05925 365 TVS--CEGPLALITMIGAKLASWKVVRTFTEKLRGYQTPVFC 404 (440)
T ss_pred eEE--EECCEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEE
Confidence 122 2347778888875 2378999999999999999965
No 352
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=22.27 E-value=97 Score=27.75 Aligned_cols=124 Identities=18% Similarity=0.161 Sum_probs=65.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHhCCceEEEEEEEec---CCE--EEEEEEEEcCCCCCCCchHHHHHHHHHhcccCCCC
Q 013535 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD---GGW--FMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA 101 (441)
Q Consensus 27 ~~~v~V~~~DrpGLf~~i~~~L~~~glnI~~A~i~t~---~g~--~~d~f~V~~~~g~~~~~~~~~~~L~~~L~~~~~~~ 101 (441)
...+-|..+|+||-+.++.+=|+..|.||...-=... ++. +-.+|.+.. +...+.+.+.++...-
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~--------~~~~~~i~~~~e~~Gi-- 74 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDR--------EDKDAKIIRLLEEEGI-- 74 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecc--------cHHHHHHHHHHHhCCc--
Confidence 3567788999999999999999999999995432222 222 222233311 1233444445533221
Q ss_pred CCcceeeee--cCCCCeEEEEEEeCCCc-chHHHHHHHHHhcCCeEEEEEEEee--CCeEEEEEEEEe
Q 013535 102 PSLRSSVGV--MPTEEHTSIEFTGTDRP-GLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTD 164 (441)
Q Consensus 102 ~~~~~~v~~--~~~~~~t~i~v~~~Drp-GLl~~i~~~L~~~g~~I~~A~i~T~--~~~~~dvF~V~~ 164 (441)
..+.+ ......+.+.+.|.=-. ++=-.|-++=+..|..+.+..+.-. .+.....+.+.-
T Consensus 75 ----~I~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a 138 (170)
T COG2061 75 ----IIIRFDGARLREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIA 138 (170)
T ss_pred ----EEEEecCcCcceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEE
Confidence 11122 22234455555554333 3334444444555566777666543 333334444433
No 353
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=21.67 E-value=3.6e+02 Score=25.76 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=62.4
Q ss_pred CEEEEEc--CCCCeEEEEEEecCCcchHHHHHHHHHhCCceEEE----EEEEecCCeEEEEEEEEccCCCCCCCHHHHHH
Q 013535 240 PQVTVLN--IEKDYTVITMRSKDRPKLLFDIVCTLTDMQYVVFH----GMVNTGRTEAYQEFYIRHVDGLPISSEAERER 313 (441)
Q Consensus 240 ~~V~v~~--~~~~~t~I~V~~~DrpGLl~~i~~~L~~~glnI~~----A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~ 313 (441)
-.+.++. +.+-..+|++.+.++.....+|-.+|...|.++.. ..++..-|. +.+.. .+. + .-+.
T Consensus 79 ~~~~yEg~gP~Gvaiive~lTDN~nRt~~~ir~~~~K~gg~l~~~gsv~~~F~~kG~----i~~~~-~~~---~--~d~~ 148 (234)
T PF01709_consen 79 EEITYEGYGPGGVAIIVECLTDNKNRTVSDIRSIFKKNGGSLGPSGSVSFMFERKGV----IEVSK-KDL---D--EDEL 148 (234)
T ss_dssp EEEEEEEEETTTEEEEEEEEES-HHHHHHHHHHHHHTTT-EEE-TTSSGGGEEEEEE----EEEEH-CCS------HHHH
T ss_pred eEEEEEEEcCCCcEEEEEEeCCCHhHHHHHHHHHHHHcCceeCCCCcceeeeeeeEE----EEEEe-CCC---C--hHHH
Confidence 3456665 66677899999999999999999999999997654 111111121 22322 111 1 1122
Q ss_pred HHHHHHHHHhh-hcCCceEEEEEeCCccchHHHHHHHHHHCCceEEEEEEE
Q 013535 314 VIQCLEAAIER-RASEGLELELCTEDRVGLLSDITRIFRENSLSIKRAEIS 363 (441)
Q Consensus 314 l~~~L~~~L~~-r~~~~~~ieV~~~DrpGLL~~It~~l~~~~v~I~~A~i~ 363 (441)
++.+|+.-... ...+.. +++.+. |.-+..|...|.+.|+.|.++.+.
T Consensus 149 ~e~aIe~GaeDve~~d~~-~~~~c~--p~~~~~v~~~L~~~g~~i~~~e~~ 196 (234)
T PF01709_consen 149 MEDAIEAGAEDVEEDDGE-FEFICD--PSDLSAVKKALEKKGYEIESAELE 196 (234)
T ss_dssp HHHHHHHTESEEEECTSE-EEEEEE--GGGHHHHHHHHHHTT---SEEEEE
T ss_pred HHHHHhCCCcEeeecCCe-EEEEEC--HHHHHHHHHHHHHcCCCeeEEEEE
Confidence 22233311100 011222 444443 888999999999999999988865
No 354
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=21.00 E-value=7.4e+02 Score=23.71 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=63.2
Q ss_pred ecCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHhhhcCCceEEEEEeC
Q 013535 258 SKDRPKLLFDIVCTLTDMQYVVFHGMVNTGRTEAYQEFYIRHVDGLPISSEAERERVIQCLEAAIERRASEGLELELCTE 337 (441)
Q Consensus 258 ~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~F~V~~~~g~~i~~~~~~~~l~~~L~~~L~~r~~~~~~ieV~~~ 337 (441)
+.-.|..+.+++..+.+.|.+. +++.|..|.. .|....++-+.+.+.+ +. ..+++.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~G~d~---------------i~l~DT~G~~--~P~~v~~lv~~l~~~~----~~-~~l~~H~H 193 (263)
T cd07943 136 HMASPEELAEQAKLMESYGADC---------------VYVTDSAGAM--LPDDVRERVRALREAL----DP-TPVGFHGH 193 (263)
T ss_pred cCCCHHHHHHHHHHHHHcCCCE---------------EEEcCCCCCc--CHHHHHHHHHHHHHhC----CC-ceEEEEec
Confidence 4456678888888888887654 5667777753 2345555555555432 22 47999999
Q ss_pred CccchHHHHHHHHHHCCceEEEEEEEeeCCe
Q 013535 338 DRVGLLSDITRIFRENSLSIKRAEISTIGGK 368 (441)
Q Consensus 338 DrpGLL~~It~~l~~~~v~I~~A~i~T~g~~ 368 (441)
|..|+=..=+-+-.+.|+++..+.+.-.|++
T Consensus 194 n~~GlA~AN~laAi~aGa~~vd~s~~GlG~~ 224 (263)
T cd07943 194 NNLGLAVANSLAAVEAGATRIDGSLAGLGAG 224 (263)
T ss_pred CCcchHHHHHHHHHHhCCCEEEeecccccCC
Confidence 9999865555555578999999999888887
Done!