Query 013537
Match_columns 441
No_of_seqs 240 out of 654
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 04:51:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2572 Ribosome biogenesis pr 100.0 1E-117 2E-122 895.1 24.1 324 1-330 111-434 (498)
2 KOG2573 Ribosome biogenesis pr 100.0 2E-104 5E-109 798.5 22.6 291 1-291 120-415 (498)
3 COG1498 SIK1 Protein implicate 100.0 9.2E-93 2E-97 719.6 26.7 286 2-292 71-359 (395)
4 PRK14552 C/D box methylation g 100.0 6.4E-90 1.4E-94 708.6 26.4 284 1-287 88-376 (414)
5 KOG2574 mRNA splicing factor P 100.0 1.5E-69 3.3E-74 549.0 11.5 265 47-316 94-360 (492)
6 PF01798 Nop: Putative snoRNA 100.0 1.3E-56 2.8E-61 407.0 8.8 149 141-289 1-150 (150)
7 PF08060 NOSIC: NOSIC (NUC001) 99.9 1.8E-23 3.9E-28 159.9 6.5 53 49-101 1-53 (53)
8 KOG2014 SMT3/SUMO-activating c 70.0 8.7 0.00019 39.9 5.5 72 119-191 229-304 (331)
9 KOG2572 Ribosome biogenesis pr 65.9 2.4 5.3E-05 45.3 0.7 35 153-187 199-233 (498)
10 PF04286 DUF445: Protein of un 51.4 1.1E+02 0.0024 30.5 9.6 40 147-186 283-322 (367)
11 PF10436 BCDHK_Adom3: Mitochon 49.3 36 0.00078 31.7 5.3 39 65-103 52-95 (164)
12 KOG2573 Ribosome biogenesis pr 42.0 15 0.00033 39.5 1.8 17 240-256 277-293 (498)
13 PF04001 Vhr1: Transcription f 33.1 79 0.0017 27.5 4.4 63 28-91 6-82 (95)
14 cd07631 BAR_APPL1 The Bin/Amph 29.8 1.3E+02 0.0028 29.9 5.9 70 20-90 32-104 (215)
15 PF05918 API5: Apoptosis inhib 28.8 1.9E+02 0.0041 32.5 7.6 36 141-176 131-170 (556)
16 KOG2199 Signal transducing ada 28.4 45 0.00097 36.0 2.7 62 133-195 20-81 (462)
17 KOG1086 Cytosolic sorting prot 27.7 58 0.0013 35.7 3.4 33 134-190 21-53 (594)
18 PRK07117 acyl carrier protein; 26.8 2.5E+02 0.0055 23.1 6.4 27 120-146 43-69 (79)
19 TIGR03738 PRTRC_C PRTRC system 26.8 37 0.0008 27.9 1.3 18 69-86 26-43 (66)
20 PF00790 VHS: VHS domain; Int 25.8 1.8E+02 0.0039 26.0 5.7 58 133-191 17-74 (140)
21 COG5103 CDC39 Cell division co 25.5 1.8E+02 0.004 35.9 7.0 50 150-199 1113-1175(2005)
22 PF05103 DivIVA: DivIVA protei 24.8 39 0.00085 29.3 1.3 43 32-74 9-51 (131)
23 PF11887 DUF3407: Protein of u 24.2 2.3E+02 0.005 28.4 6.8 86 10-96 2-89 (267)
24 PRK09772 transcriptional antit 21.9 7.3E+02 0.016 24.6 9.7 119 19-150 91-217 (278)
25 PF05190 MutS_IV: MutS family 20.9 1.8E+02 0.0039 23.2 4.4 36 46-83 2-37 (92)
26 PLN02914 hexokinase 20.4 2.2E+02 0.0048 31.4 6.2 66 127-192 378-488 (490)
27 cd03568 VHS_STAM VHS domain fa 20.4 95 0.0021 28.4 2.9 95 134-252 13-107 (144)
28 PF10444 Nbl1_Borealin_N: Nbl1 20.2 1.3E+02 0.0029 23.4 3.3 24 55-78 5-28 (59)
No 1
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-117 Score=895.13 Aligned_cols=324 Identities=76% Similarity=1.087 Sum_probs=310.8
Q ss_pred ChhHHHHHhhHHHHhcCCCcCCchhhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 013537 1 MELMRGVRSQLTELISGLAVQDIQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFP 80 (441)
Q Consensus 1 ~el~R~iR~~~~~l~~~l~~~d~~~~~lgLshslsr~Klk~s~~k~D~mIvqai~LLddLDkEIn~~~mrvrEwY~~hFP 80 (441)
+||+||||+|+++||+|+.++||.+|+|||+|+++||||+|+||+|||||||||+||||||+|||+|+||||||||||||
T Consensus 111 ~el~RgiRs~l~el~~g~~~~dl~~msLglaHslar~Klkfs~dKvDtmIiQaisLLDDLDkeLNtY~mRvrEwYGwHFP 190 (498)
T KOG2572|consen 111 MELLRGIRSQLTELISGLNDSDLAAMSLGLAHSLARYKLKFSPDKVDTMIIQAISLLDDLDKELNTYAMRVKEWYGWHFP 190 (498)
T ss_pred HHHHHHHHHHHHHHhccCChhhhhHHHHHHHHHHHhhhcccCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhccCcHHHHHHHHHhcCCCCCCcccccccCcHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013537 81 ELTKIIQDNILYAKAVKFMGNRTNAAKLDFSEILPEEVEAGLKEAAMISMGTEVSDLDLLNIKELCNQVLSLAEYRAQLY 160 (441)
Q Consensus 81 EL~siv~d~~~YakvV~~ignr~n~~~~dLseiL~~e~~~~i~~aA~~SmG~~lse~Dl~~I~~lc~~vi~L~e~R~~L~ 160 (441)
||.+||+||+.|+++|+.||+|.|+.+.||++|||++++..+..+|.+|||++|++.|+.+|..+|+||+++.+||.||+
T Consensus 191 EL~kii~dn~~Yak~vk~mG~r~~~a~~d~sEil~eeiE~~~k~aAeiSMgteis~~Dl~nI~~l~dqVle~aeyR~qL~ 270 (498)
T KOG2572|consen 191 ELAKIIQDNYAYAKLVKAMGVRCNAASLDFSEILPEEIEAELKEAAEISMGTEISDSDLLNIKELCDQVLELAEYRDQLI 270 (498)
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhhhcccHHhhchHHHHHHHHhhhhhhhcccccHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeeccccccCCc
Q 013537 161 DYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAP 240 (441)
Q Consensus 161 ~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLktk~~tPK~GlIy~s~lV~~ap~ 240 (441)
+||++||..||||||+|||++||||||+|||||.||||+|+||||||||||||||+|+|+++||+||+||||+||+|+||
T Consensus 271 dylknrM~~iAPnLTaLvGElVGaRlIshaGSL~nLaK~p~StIQilGAEKALFrALKtk~~TPKYGLIyhasLVgQa~p 350 (498)
T KOG2572|consen 271 DYLKNRMRTIAPNLTALVGELVGARLISHAGSLFNLAKAPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLVGQASP 350 (498)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhHHHHhhCChhHHHHHhhHHHHHHHHhcccCCCCCcceeccchhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHhhhhHHHHHhhhccCCCCCchhcHHHHHHHHHHHHHhhcCccccccCCCCCCCchhhccccccCCCCcccc
Q 013537 241 KHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARLRNLEGKELSRAAGSAKGKPKLEVYDKDRKKGPGAMIT 320 (441)
Q Consensus 241 k~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kLe~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 320 (441)
+++|||+|+||||++||+|+|+|+++.++.+|.+.|.+||+||+.|+++.+++.++.+++.+....|..... ..
T Consensus 351 KnKGKIaR~LAaK~alA~R~Dalge~~~~~iGve~R~klE~rlr~lE~r~l~~~s~~~k~~~K~~~ye~~~~------~~ 424 (498)
T KOG2572|consen 351 KNKGKIARSLAAKTALAARIDALGEESTNEIGVENRAKLEKRLRSLEGRDLQESSILKKPLAKKEKYEGRSE------TT 424 (498)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhhhccCcccccccccchhHHHHhccccc------cC
Confidence 999999999999999999999999999999999999999999999999999998888888888887763211 23
Q ss_pred cccccCCCcC
Q 013537 321 AAKTYNPAAD 330 (441)
Q Consensus 321 ~~~~~~~~~d 330 (441)
.+.+|++..|
T Consensus 425 ~adt~~~~~~ 434 (498)
T KOG2572|consen 425 SADTYNTIRD 434 (498)
T ss_pred cccccccccc
Confidence 4455555555
No 2
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-104 Score=798.45 Aligned_cols=291 Identities=55% Similarity=0.849 Sum_probs=281.7
Q ss_pred ChhHHHHHhhHHHHhcCCCcCCchhhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 013537 1 MELMRGVRSQLTELISGLAVQDIQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFP 80 (441)
Q Consensus 1 ~el~R~iR~~~~~l~~~l~~~d~~~~~lgLshslsr~Klk~s~~k~D~mIvqai~LLddLDkEIn~~~mrvrEwY~~hFP 80 (441)
+||+||+|.||+.|+.+|++-|+..++|||+|+|||.|++|+++++|+||||+|.|||+||++||+|+||||||||||||
T Consensus 120 ~ellRGvR~hf~kl~K~L~~~d~~kaqLGLghsYSRaKVkfnV~R~DnmvIqaI~lLDqlDKDINtfaMRirEwYswhFP 199 (498)
T KOG2573|consen 120 QELLRGVRKHFDKLMKGLDPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIALLDQLDKDINTFAMRIREWYSWHFP 199 (498)
T ss_pred HHHHHHHHHHHHHHHccCCCccHHHHHhcccchhhhhheeecccccchHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhccCcHHHHHHHHHhcCCCCCCccc---ccccC--cHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013537 81 ELTKIIQDNILYAKAVKFMGNRTNAAKLD---FSEIL--PEEVEAGLKEAAMISMGTEVSDLDLLNIKELCNQVLSLAEY 155 (441)
Q Consensus 81 EL~siv~d~~~YakvV~~ignr~n~~~~d---LseiL--~~e~~~~i~~aA~~SmG~~lse~Dl~~I~~lc~~vi~L~e~ 155 (441)
||.+||+||..||++|+.|+++..++... +-++| ..+....|+.|+.+|||++||+.||.||..|+++|.+|.+|
T Consensus 200 EL~kiv~DNy~ya~~~~~i~dk~~l~ed~~~~~~e~l~~d~~ka~~Iiea~k~SMG~diS~~Dl~Ni~~fa~rV~~l~ey 279 (498)
T KOG2573|consen 200 ELVKIVPDNYKYAKVVKFIVDKEKLNEDGLHELLEDLGVDSEKAQEIIEAAKNSMGQDISPADLENIRKFAERVSDLAEY 279 (498)
T ss_pred HHHHhccchHHHHHHHHHHhchhhccccchhHHHHHhcCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887654 33344 36789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeecccc
Q 013537 156 RAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLV 235 (441)
Q Consensus 156 R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLktk~~tPK~GlIy~s~lV 235 (441)
|++|++||.++|+.|||||++|+|+.||||||+|||||+||||+||||||||||||||||+|+|+++||||||||||+||
T Consensus 280 Rk~L~~YL~~KMs~vAPnLa~LIGe~vgARLIShAGsLtNLaK~PASTvQIlGAEKALFRALKtrgnTPKYGLIyhSsfi 359 (498)
T KOG2573|consen 280 RKQLSDYLKDKMSSVAPNLAALIGEVVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIYHSSFI 359 (498)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHhccccchhhhCcchHHHHhhhHHHHHHHHHhcCCCCCceeEeecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccchhHHHhhhhHHHHHhhhccCCCCCchhcHHHHHHHHHHHHHhhcCcc
Q 013537 236 GQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARLRNLEGKEL 291 (441)
Q Consensus 236 ~~ap~k~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kLe~~~~ 291 (441)
+.|..+++|+|+|+||+||+||+|||||++.+++.||..+|++||+||+.++.|..
T Consensus 360 grA~akNKGRISRyLAnKCSIAsrIDcFse~pts~fGe~Lr~qVEeRL~fy~tg~~ 415 (498)
T KOG2573|consen 360 GRAGAKNKGRISRYLANKCSIASRIDCFSEDPTSVFGEKLREQVEERLEFYETGEA 415 (498)
T ss_pred hhhhccccchHHHHHHhhccHHHhhhhcccCCchHHHHHHHHHHHHHHHhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999998754
No 3
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-93 Score=719.60 Aligned_cols=286 Identities=51% Similarity=0.780 Sum_probs=275.5
Q ss_pred hhHHHHHhhHHHHhcCCCcCCchhhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 013537 2 ELMRGVRSQLTELISGLAVQDIQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPE 81 (441)
Q Consensus 2 el~R~iR~~~~~l~~~l~~~d~~~~~lgLshslsr~Klk~s~~k~D~mIvqai~LLddLDkEIn~~~mrvrEwY~~hFPE 81 (441)
.+.++++.++.+|..+. +.|+..|.++++|.++|.++++++++.|+||||||++|||||++||.|+|||||||||||||
T Consensus 71 ~~r~~~~~~~~~l~~~~-~~d~~~~~~~~~~~~sr~kv~~~~~~~D~~iiqai~~lddiDk~iN~~~~RlrEWY~~hFPE 149 (395)
T COG1498 71 DLRENAEEALGELSSSD-EDDYYRMLLGLGHELSRIKVREEVDKEDKLIIQAIEALDDIDKEINLLAMRLREWYGWHFPE 149 (395)
T ss_pred HHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 46788999999998876 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccCcHHHHHHHHHhcCCCCCCcc---cccccCcHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 013537 82 LTKIIQDNILYAKAVKFMGNRTNAAKL---DFSEILPEEVEAGLKEAAMISMGTEVSDLDLLNIKELCNQVLSLAEYRAQ 158 (441)
Q Consensus 82 L~siv~d~~~YakvV~~ignr~n~~~~---dLseiL~~e~~~~i~~aA~~SmG~~lse~Dl~~I~~lc~~vi~L~e~R~~ 158 (441)
|++||+||.+||++|..+|+|.+++.. +|..++|. ..+.|..+|..|||+++++.|+.+|..+|+.|.+|.++|.+
T Consensus 150 L~~lv~~~~~Y~~~V~~~g~~~~~~~~~~~~l~~~~~~-~~~~i~~aA~~SmG~~~~~~Di~~i~~~ae~i~~L~~~R~~ 228 (395)
T COG1498 150 LSSLVPDNEQYAKLVSALGNRENINKESLKDLGFALPD-IAIKIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQ 228 (395)
T ss_pred hhhhcccHHHHHHHHHHHcchhccchhhHHHHhhhcch-HHHHHHHHhhcccccCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 56666777 88899999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeeccccccC
Q 013537 159 LYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQA 238 (441)
Q Consensus 159 L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLktk~~tPK~GlIy~s~lV~~a 238 (441)
|.+||+++|+.||||||+|||++||||||+|||||.+||+|||||||+||||||||+||+++++|||||+||||++|+++
T Consensus 229 l~~Yi~~~M~~vAPNlt~LVG~~lgARLIs~AGgL~~LAk~PASTIQvLGAEKALFraL~~~~~~PK~GvIy~~p~I~~s 308 (395)
T COG1498 229 LEEYIESKMSEIAPNLTALVGPVLGARLISHAGGLTRLAKMPASTIQVLGAEKALFRALKTGAKTPKYGVIYQSPLIQKS 308 (395)
T ss_pred HHHHHHHHHHHhCccHHHHHhHHHHHHHHHHhcCHHHHHhCccchhhhhhhhHHHHHHHhCCCCCCCceeEeeChhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchhHHHhhhhHHHHHhhhccCCCCCchhcHHHHHHHHHHHHHhhcCccc
Q 013537 239 APKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARLRNLEGKELS 292 (441)
Q Consensus 239 p~k~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kLe~~~~~ 292 (441)
|+|+||||||+||||||||||||+|++.+++ ..||++|++||++|.+++..
T Consensus 309 p~~~rGkiAR~LAaK~AIAARiD~~s~~~~~---~~lr~ele~Ri~~i~~~~~~ 359 (395)
T COG1498 309 PPWQRGKIARALAAKLAIAARIDAFSGEPDG---ISLREELEKRIEKLKEKPPK 359 (395)
T ss_pred CHHHhhHHHHHHHHHHHHHHHHHhccCCCCh---HHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999886 89999999999999987643
No 4
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=100.00 E-value=6.4e-90 Score=708.60 Aligned_cols=284 Identities=41% Similarity=0.616 Sum_probs=276.1
Q ss_pred ChhHHHHHhhHHHHhcCC----CcCCchhhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013537 1 MELMRGVRSQLTELISGL----AVQDIQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYG 76 (441)
Q Consensus 1 ~el~R~iR~~~~~l~~~l----~~~d~~~~~lgLshslsr~Klk~s~~k~D~mIvqai~LLddLDkEIn~~~mrvrEwY~ 76 (441)
++++||||.|+++++.++ .+.|+..|.+||+|++||++|+|++++.|+||||||.++|+||++||.||||||+||+
T Consensus 88 ~~~~r~iR~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~sr~klk~~~~~~D~~iiqai~~ld~ldk~in~~~~RLrewY~ 167 (414)
T PRK14552 88 NKIGEFLRENLPELGVEYGFFEDEEEFYEKLHEWSVELTRRKLRSAAQKRDKLAIQAIRAIDDIDKTINLFSERLREWYS 167 (414)
T ss_pred HHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHhHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999754 5889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccchhccCcHHHHHHHHHhcCCCCCCccccccc-CcHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013537 77 WHFPELTKIIQDNILYAKAVKFMGNRTNAAKLDFSEI-LPEEVEAGLKEAAMISMGTEVSDLDLLNIKELCNQVLSLAEY 155 (441)
Q Consensus 77 ~hFPEL~siv~d~~~YakvV~~ignr~n~~~~dLsei-L~~e~~~~i~~aA~~SmG~~lse~Dl~~I~~lc~~vi~L~e~ 155 (441)
||||||++||+|+.+|+++|+.++++.++...+|.++ +++++++.|.++|..|||+++++.|+.+|..+|++|++|+++
T Consensus 168 ~~FPEL~~iv~d~~~Y~~iV~~i~~~~~i~~~~l~~i~l~~eka~~I~~aA~~S~G~~lse~dl~~I~~~a~~I~~L~e~ 247 (414)
T PRK14552 168 LHFPELDELVKKHEEYVKLVSELGDRENYTREKLKKLGLPENKARKIAEAAKKSMGADLSEFDLEAIKKLANEILDLYKL 247 (414)
T ss_pred hhCcCHHhhcCChHHHHHHHHHcCChhhhhhhHHHhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988889998 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeecccc
Q 013537 156 RAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLV 235 (441)
Q Consensus 156 R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLktk~~tPK~GlIy~s~lV 235 (441)
|++|.+||+++|..||||||+|||+++|||||+|||||.+||+|||||||||||||+||+||+|++.||||||||||++|
T Consensus 248 R~~L~~yI~~~M~~iAPNLtaLVG~~lAArLIa~AGsL~~Lak~PastIqiLGAeKalf~~l~t~~~~pk~G~Iy~~~~V 327 (414)
T PRK14552 248 REELEDYLETVMKEVAPNLTALVGPSLGARLISLAGGLEELAKMPASTIQVLGAEKALFRHLRTGAKPPKHGVIFQYPAI 327 (414)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhHHHHHHHHHhCCHHHHhhCCchHHHHhchhhHHHHHhccCCCCCCceEEEcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccchhHHHhhhhHHHHHhhhccCCCCCchhcHHHHHHHHHHHHHhh
Q 013537 236 GQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARLRNLE 287 (441)
Q Consensus 236 ~~ap~k~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kLe 287 (441)
|++|+++||||+|+||||||||||||+|++ +.+|..+|++|++||++|.
T Consensus 328 ~~~p~~~rgkiaR~lA~K~alAARiD~~~~---~~~G~~l~~~l~~ri~~i~ 376 (414)
T PRK14552 328 HGSPWWQRGKIARALAAKLAIAARVDYFSG---RYIGDELKEELNKRIEEIK 376 (414)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHhhhcCC---ccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986 4799999999999999764
No 5
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification]
Probab=100.00 E-value=1.5e-69 Score=549.04 Aligned_cols=265 Identities=29% Similarity=0.478 Sum_probs=251.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhccCcHHHHHHHHHhcCCCCCCcccccc--cCcHHHHHHHHH
Q 013537 47 DTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNILYAKAVKFMGNRTNAAKLDFSE--ILPEEVEAGLKE 124 (441)
Q Consensus 47 D~mIvqai~LLddLDkEIn~~~mrvrEwY~~hFPEL~siv~d~~~YakvV~~ignr~n~~~~dLse--iL~~e~~~~i~~ 124 (441)
=.+||.|+.+..+||+||+.+|.|||+||+.+||||++||++|++|+++|+.|||..|...+++.. |||..++|+|.+
T Consensus 94 ykLIVd~n~iavdI~nEI~ivH~FikdkY~~RFpELeSLVp~~ldY~~~Vk~LgNelD~~~~~l~~~~~L~~atIMVvsv 173 (492)
T KOG2574|consen 94 YKLIVDCNQIAVDIENEIVIVHNFIKDKYSKRFPELESLVPNPLDYAKVVKELGNELDLKKVDLELQAILPSATIMVVSV 173 (492)
T ss_pred eeeeechhhhhhhhhhhHHHHHHHHHHHHHhhhhhhHhhccCHHHHHHHHHHHhhhHHHHHhhhhhhccCccceEEEEEE
Confidence 357999999999999999999999999999999999999999999999999999998887777665 999999999999
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhh
Q 013537 125 AAMISMGTEVSDLDLLNIKELCNQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTV 204 (441)
Q Consensus 125 aA~~SmG~~lse~Dl~~I~~lc~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStI 204 (441)
+|++|.|..++++.+..|.++|+++++|...|..|.+||++||+.||||||+|||+.++|+||++||||.+|++||||||
T Consensus 174 TasTT~G~~Lp~d~~~~v~eAc~~a~~L~~~k~ki~eyVeSrms~IAPNLs~ivGs~taA~Lig~AGGls~Lsk~PaCNv 253 (492)
T KOG2574|consen 174 TASTTQGNKLPEDELEQVLEACEMAEQLNKLKEKIYEYVESRMSFIAPNLSAIVGSTTAAKLIGIAGGLSELSKMPACNV 253 (492)
T ss_pred EeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHhhhcHHHHHHHHHhhcCchhhccCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhhhhhhhhccCCCCCeeEEeeccccccCCccccchhHHHhhhhHHHHHhhhccCCCCCchhcHHHHHHHHHHHH
Q 013537 205 QILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARLR 284 (441)
Q Consensus 205 QiLGAEKaLFraLktk~~tPK~GlIy~s~lV~~ap~k~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~ 284 (441)
|+||+.|.+..+|+|-...|+|||||+|++||..||++|+|++|||||||+||||||+++++++|.+|.+||++|+.+|+
T Consensus 254 ~vlGk~kk~l~gfst~~~~~~~Gyly~s~ivQk~Ppdl~~ka~Rl~aAKvtLAARVDa~he~~~g~~g~~~k~evekK~e 333 (492)
T KOG2574|consen 254 QVLGKQKKTLIGFSTTSSLPHTGYLYASDIVQKTPPDLRKKAARLVAAKVTLAARVDAGHESPNGELGHEFKAEVEKKIE 333 (492)
T ss_pred hhhhccchhccccccccccCccceeeHHhHhhhcCccHHHHHHHHHHHHHHHHHHhhccccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCccccccCCCCCCCchhhccccccCCCC
Q 013537 285 NLEGKELSRAAGSAKGKPKLEVYDKDRKKGPG 316 (441)
Q Consensus 285 kLe~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 316 (441)
+|.++|.. ..+++.|.|.+.++|+|.|
T Consensus 334 Kl~EpPpv-----k~~KaLP~P~d~pkKkRgG 360 (492)
T KOG2574|consen 334 KLQEPPPV-----KQTKALPIPLDGPKKKRGG 360 (492)
T ss_pred hhcCCCCC-----CcCCCCCCCCccchhhccc
Confidence 99998753 2355667777777777663
No 6
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins. The function of the domain is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Proteins have been implicated in an expanding variety of functions during pre-mRNA splicing. Molecular cloning has identified genes encoding spliceosomal proteins that potentially act as novel RNA helicases, GTPases, or protein isomerases. Novel protein-protein and protein-RNA interactions that are required for functional spliceosome formation have also been described. Finally, growing evidence suggests that proteins may contribute directly to the spliceosome's active sites [].; PDB: 3GQX_B 3GQU_A 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E 3SIU_B 3SIV_H ....
Probab=100.00 E-value=1.3e-56 Score=406.99 Aligned_cols=149 Identities=55% Similarity=0.866 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhcc
Q 013537 141 NIKELCNQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTK 220 (441)
Q Consensus 141 ~I~~lc~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLktk 220 (441)
||.++|++|++|+++|+.|.+||++||..||||||+|||+.||||||++||||.+||+|||||||+|||||++|++|+++
T Consensus 1 ~I~~~~~~~~~L~~~r~~l~~yi~~rm~~iAPNLsaLvG~~vaA~Li~~aGgL~~Lak~Pasniq~lGaeK~~~~~l~~~ 80 (150)
T PF01798_consen 1 NILSACDEVISLSEYRKELLEYIESRMSEIAPNLSALVGSSVAARLISHAGGLENLAKMPASNIQVLGAEKALFRGLKTK 80 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTS-HHHHTTSTCHHHHHHHHCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCchHHHHHCcHHHHHHHHHcccHHHHHhCCHhhHHHHHhHHHHhHHhccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEeeccccccCCccccchhHHHhhhhHHHHHhhhccCCCCCch-hcHHHHHHHHHHHHHhhcC
Q 013537 221 HATPKYGLIYHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNS-MGLENRAKLEARLRNLEGK 289 (441)
Q Consensus 221 ~~tPK~GlIy~s~lV~~ap~k~KgKiaR~LAaK~aLAARvDa~~~~~d~~-~G~~~Re~Ie~rl~kLe~~ 289 (441)
+.||||||||||++|+++||++||||+|+||+||+||||||+|+++++++ ||..||++|++||++|+++
T Consensus 81 ~~~pk~G~i~~~~~V~~~p~~~r~k~~R~lA~K~aLAARiD~~~~~~~~~~~G~~~re~i~~ki~k~~e~ 150 (150)
T PF01798_consen 81 AKTPKYGYIYQSDLVQKAPPKLRGKAARMLAAKCALAARIDAFSESPDGSAFGKKLREEIEKKIEKLQEK 150 (150)
T ss_dssp -SSTSSSGGGGSHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCeeEEecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999995 9999999999999999873
No 7
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=99.89 E-value=1.8e-23 Score=159.91 Aligned_cols=53 Identities=60% Similarity=1.089 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhccCcHHHHHHHHHhcC
Q 013537 49 MIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNILYAKAVKFMGN 101 (441)
Q Consensus 49 mIvqai~LLddLDkEIn~~~mrvrEwY~~hFPEL~siv~d~~~YakvV~~ign 101 (441)
||||||+++++||+|||.+|||+|||||||||||+++|+||.+||++|+.|||
T Consensus 1 ~Ii~~~~l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~~~~Y~~vV~~i~n 53 (53)
T PF08060_consen 1 LIIQANELLDDIDKEINLLHMRLREWYSWHFPELESLVPNPIDYAKVVKIIGN 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-SHHHHHHHHHHTTS
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHcCCHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999997
No 8
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=69.97 E-value=8.7 Score=39.89 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=55.0
Q ss_pred HHHHHHHHhhhcCC---CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhc
Q 013537 119 EAGLKEAAMISMGT---EVSDLDLLNIKELCNQVLS-LAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGG 191 (441)
Q Consensus 119 ~~~i~~aA~~SmG~---~lse~Dl~~I~~lc~~vi~-L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AG 191 (441)
.+.+...-.+|-|. +.+++|+..+..+-+.++. +.-.-.++.+|+..--..+|| .||+||..||...|-.-+
T Consensus 229 ll~v~l~f~~s~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~P-v~AvVGGivaQevIk~is 304 (331)
T KOG2014|consen 229 LLPVLLKFRTSEGRDPGETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAP-VCAVVGGILAQEVIKAIS 304 (331)
T ss_pred hHHHHHHHHHhcCCCCccccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCc-hhhhhhhHhHHHHHHHhh
Confidence 34444555556555 4669999988887777776 666677777999999999999 999999999988876443
No 9
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=65.92 E-value=2.4 Score=45.26 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhccccccchhHHHhchHHHHHHH
Q 013537 153 AEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLI 187 (441)
Q Consensus 153 ~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLI 187 (441)
+-.-..+..++-.|....--+++.++++.+-+.|=
T Consensus 199 n~~Yak~vk~mG~r~~~a~~d~sEil~eeiE~~~k 233 (498)
T KOG2572|consen 199 NYAYAKLVKAMGVRCNAASLDFSEILPEEIEAELK 233 (498)
T ss_pred hHHHHHHHHHHhHhhhhhcccHHhhchHHHHHHHH
Confidence 33344566677777777778888888888877765
No 10
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=51.37 E-value=1.1e+02 Score=30.48 Aligned_cols=40 Identities=15% Similarity=0.360 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHH
Q 013537 147 NQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARL 186 (441)
Q Consensus 147 ~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArL 186 (441)
+.+..-.+.+..|..||...+..+..+....||.+|.-+|
T Consensus 283 ~~l~~~~~l~~~i~~~i~~~l~~~v~~~~~~i~~~V~~~l 322 (367)
T PF04286_consen 283 DKLKEDPELREKINRFIENLLERIVESNHIDIGEIVEEKL 322 (367)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443446778888888888888888877777777766554
No 11
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=49.28 E-value=36 Score=31.71 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhccCCccchh-----ccCcHHHHHHHHHhcCCC
Q 013537 65 NTYAMRVREWYGWHFPELTKI-----IQDNILYAKAVKFMGNRT 103 (441)
Q Consensus 65 n~~~mrvrEwY~~hFPEL~si-----v~d~~~YakvV~~ignr~ 103 (441)
|-....|++||-+-|-+|-+. ..++..|+.++..|-++.
T Consensus 52 ~p~i~~V~~~Y~~sF~~L~~~~~~~~~~~~~~F~~~l~~i~~~H 95 (164)
T PF10436_consen 52 NPSIQQVYEWYLQSFEELRSFPPPKTLEDNEKFTELLERILDRH 95 (164)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSTTTSCCHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 556789999999999988875 225778888888887765
No 12
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=41.98 E-value=15 Score=39.54 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=10.2
Q ss_pred ccccchhHHHhhhhHHH
Q 013537 240 PKHKGKISRSLAAKTAL 256 (441)
Q Consensus 240 ~k~KgKiaR~LAaK~aL 256 (441)
..+|.+..-+|..|.+.
T Consensus 277 ~eyRk~L~~YL~~KMs~ 293 (498)
T KOG2573|consen 277 AEYRKQLSDYLKDKMSS 293 (498)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35666666666666553
No 13
>PF04001 Vhr1: Transcription factor Vhr1; InterPro: IPR007147 This is a family of proteins of unknown function found in yeast.
Probab=33.11 E-value=79 Score=27.46 Aligned_cols=63 Identities=21% Similarity=0.426 Sum_probs=38.4
Q ss_pred hhhhHHHHHHHhhcCccch-hHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhc---cCCccchhccCcHH
Q 013537 28 LGLSHSLSRYKLKFSADKV-DTMIIQAIGLLD----------DLDKELNTYAMRVREWYGW---HFPELTKIIQDNIL 91 (441)
Q Consensus 28 lgLshslsr~Klk~s~~k~-D~mIvqai~LLd----------dLDkEIn~~~mrvrEwY~~---hFPEL~siv~d~~~ 91 (441)
+|..|++ |.+|.|.-++. -.+.-.-..|+| +=|.+|..++.-||.=||. .++|+++||+..++
T Consensus 6 ~g~Th~I-R~~LnF~De~~WK~FSsRRLELId~~~Ls~~KASEQd~~I~~iA~iLR~Ef~Yp~~~~~~FeKLV~aavQ 82 (95)
T PF04001_consen 6 NGTTHKI-REQLNFHDERKWKRFSSRRLELIDKFDLSSRKASEQDDNIRQIAEILRTEFGYPESYSSEFEKLVTAAVQ 82 (95)
T ss_pred CchhHHH-HHHhCCccHHHHHHHHHHHHHHHHHcCcccchhhhhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHH
Confidence 5666655 66777665443 223333333444 3467899999999988774 35666777665444
No 14
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=29.81 E-value=1.3e+02 Score=29.89 Aligned_cols=70 Identities=14% Similarity=0.264 Sum_probs=55.2
Q ss_pred cCCchhhhhhhhHHHHHHH-hhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCccchhccCcH
Q 013537 20 VQDIQPMSLGLSHSLSRYK-LKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWY--GWHFPELTKIIQDNI 90 (441)
Q Consensus 20 ~~d~~~~~lgLshslsr~K-lk~s~~k~D~mIvqai~LLddLDkEIn~~~mrvrEwY--~~hFPEL~siv~d~~ 90 (441)
..+|+...-.+|++|.-|+ ..|..-.-|.+|..++.-.-..=.||+.+|+++.+-- ...+| |...+.+.+
T Consensus 32 ~~~ls~a~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~L~~q~~~sl~~p-L~~F~kedL 104 (215)
T cd07631 32 QNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFP-ITQFKERDL 104 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4578888888999999998 6677777899999999998888889999999998863 34555 555555444
No 15
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=28.79 E-value=1.9e+02 Score=32.52 Aligned_cols=36 Identities=17% Similarity=0.407 Sum_probs=27.6
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhccccccchhHH
Q 013537 141 NIKELCNQVL----SLAEYRAQLYDYLKSRMNTVAPNLTA 176 (441)
Q Consensus 141 ~I~~lc~~vi----~L~e~R~~L~~YL~sRM~~IAPNLta 176 (441)
.+..++++|. .-...|..+..||..+|..+.|++..
T Consensus 131 tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~ 170 (556)
T PF05918_consen 131 TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLT 170 (556)
T ss_dssp HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS-
T ss_pred HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhh
Confidence 4677888887 44557999999999999999888766
No 16
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=28.38 E-value=45 Score=36.02 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhh
Q 013537 133 EVSDLDLLNIKELCNQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLN 195 (441)
Q Consensus 133 ~lse~Dl~~I~~lc~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~ 195 (441)
.++-++|..|+.+||.|-+-.+--..-..+|..||..--||+--+.=++++| +.+-.|....
T Consensus 20 ~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda-~~~NCg~~~r 81 (462)
T KOG2199|consen 20 KNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDA-CVANCGKRFR 81 (462)
T ss_pred ccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHH-HHHhcchHHH
Confidence 3566899999999999988878878888999999999999998777666665 4555555443
No 17
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.72 E-value=58 Score=35.69 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhh
Q 013537 134 VSDLDLLNIKELCNQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHG 190 (441)
Q Consensus 134 lse~Dl~~I~~lc~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~A 190 (441)
++++||..|..||++|- ...-|+.+|-||++|-
T Consensus 21 ~~eedw~ai~~fceqin------------------------kdp~gp~lAv~LlaHK 53 (594)
T KOG1086|consen 21 NDEEDWKAIDGFCEQIN------------------------KDPEGPLLAVRLLAHK 53 (594)
T ss_pred chHHHHHHHHHHHHHHh------------------------cCCCCchhHHHHHHhh
Confidence 48899999999999884 2456999999999984
No 18
>PRK07117 acyl carrier protein; Validated
Probab=26.82 E-value=2.5e+02 Score=23.10 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=20.8
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 013537 120 AGLKEAAMISMGTEVSDLDLLNIKELC 146 (441)
Q Consensus 120 ~~i~~aA~~SmG~~lse~Dl~~I~~lc 146 (441)
..+..+.....|.+|+++++..|..+-
T Consensus 43 veiv~~led~f~i~I~~~~~~~i~Tv~ 69 (79)
T PRK07117 43 AEIVIMTLESLSLKIPLVEFAGAKNIG 69 (79)
T ss_pred HHHHHHHHHHHCCccCHHHHHhcCCHH
Confidence 445667788899999999988765554
No 19
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=26.76 E-value=37 Score=27.87 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=15.1
Q ss_pred HHHHHHHhccCCccchhc
Q 013537 69 MRVREWYGWHFPELTKII 86 (441)
Q Consensus 69 mrvrEwY~~hFPEL~siv 86 (441)
..||+.|+..||||.+-.
T Consensus 26 e~V~dfYs~~YPeLttA~ 43 (66)
T TIGR03738 26 EQVRDFYSAQYPELLNAE 43 (66)
T ss_pred HHHHHHHhccCchheeee
Confidence 468999999999998643
No 20
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=25.84 E-value=1.8e+02 Score=26.00 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhc
Q 013537 133 EVSDLDLLNIKELCNQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGG 191 (441)
Q Consensus 133 ~lse~Dl~~I~~lc~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AG 191 (441)
.+.++||..|+.+||.|-.-...-.....-|..|+..=-||...+.=. |.--|+...|
T Consensus 17 ~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~-lld~lvkNcg 74 (140)
T PF00790_consen 17 SLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALT-LLDALVKNCG 74 (140)
T ss_dssp TSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHH-HHHHHHHHSH
T ss_pred CCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHcCC
Confidence 456679999999999998776666777777899999966776555433 3334555555
No 21
>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
Probab=25.46 E-value=1.8e+02 Score=35.92 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhccccccchhHHHhch-------------HHHHHHHHhhchhhhhhcC
Q 013537 150 LSLAEYRAQLYDYLKSRMNTVAPNLTALVGE-------------LVGARLIAHGGSLLNLAKQ 199 (441)
Q Consensus 150 i~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~-------------~vaArLIs~AGsL~~LAK~ 199 (441)
+.+...+.-|..-+.+-|..+|||||.+... -||.+||..||.=..-+.+
T Consensus 1113 La~vT~~EPlk~~i~~n~rs~a~~l~sv~~~~ae~vd~~~~eN~~va~~lIe~a~~~k~~~~i 1175 (2005)
T COG5103 1113 LALVTAQEPLKACISGNVRSYAMKLCSVLDFSAEKVDKIAMENQDVACRLIERAGVSKVSESI 1175 (2005)
T ss_pred HHHHHhHhhHHHHHhccHHHHHHHHhhhhhchHHHHHHHHHhchhHHHHHHHHhhhhhhHHHH
Confidence 4566778889999999999999999995443 5788999999965544333
No 22
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=24.81 E-value=39 Score=29.27 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=33.8
Q ss_pred HHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013537 32 HSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREW 74 (441)
Q Consensus 32 hslsr~Klk~s~~k~D~mIvqai~LLddLDkEIn~~~mrvrEw 74 (441)
|.+++-.-.|+|+.||.+|-+...-++.|..++..+-..+.++
T Consensus 9 ~~F~~~~rGYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l 51 (131)
T PF05103_consen 9 KEFKKSMRGYDPDEVDDFLDELAEELERLQRENAELKEEIEEL 51 (131)
T ss_dssp ----EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CccCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444434578999999999999999999999999999988754
No 23
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=24.20 E-value=2.3e+02 Score=28.38 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=56.6
Q ss_pred hHHHHhcCCCcCCchhhhhhhhHHHHH--HHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhcc
Q 013537 10 QLTELISGLAVQDIQPMSLGLSHSLSR--YKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQ 87 (441)
Q Consensus 10 ~~~~l~~~l~~~d~~~~~lgLshslsr--~Klk~s~~k~D~mIvqai~LLddLDkEIn~~~mrvrEwY~~hFPEL~siv~ 87 (441)
++..|+..+++.+|+...-.|+..+.- .+|.-.-+..+.++-+.+.-+++|...|..+. .+-+-|+-.=|+|..++.
T Consensus 2 ~L~~ll~~vdP~kLn~tL~ala~Al~GrG~~lg~~l~~l~~~l~~ln~~~~~l~~~l~~l~-~v~~~~a~aapdL~~~l~ 80 (267)
T PF11887_consen 2 NLTPLLDAVDPAKLNATLSALATALDGRGEQLGETLDDLNTLLATLNPRLPQLREDLRNLA-DVADTYADAAPDLLDALD 80 (267)
T ss_pred chHHHHHhCCHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHHhhhHHHHHHH
Confidence 677888889999998887777766642 23444445556666666666666666655554 455678888888888876
Q ss_pred CcHHHHHHH
Q 013537 88 DNILYAKAV 96 (441)
Q Consensus 88 d~~~YakvV 96 (441)
+-..-.++|
T Consensus 81 ~~~~~s~tL 89 (267)
T PF11887_consen 81 NLTTTSRTL 89 (267)
T ss_pred HHHHHHHHH
Confidence 644444333
No 24
>PRK09772 transcriptional antiterminator BglG; Provisional
Probab=21.87 E-value=7.3e+02 Score=24.60 Aligned_cols=119 Identities=7% Similarity=0.072 Sum_probs=55.5
Q ss_pred CcCCchhhhhhhhHHHHHHHhhcCccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCccchhccCcHHHHHHHH
Q 013537 19 AVQDIQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLL-DDLDKELNTYAMRVREWYGWHFPELTKIIQDNILYAKAVK 97 (441)
Q Consensus 19 ~~~d~~~~~lgLshslsr~Klk~s~~k~D~mIvqai~LL-ddLDkEIn~~~mrvrEwY~~hFPEL~siv~d~~~YakvV~ 97 (441)
.+..+..+..=|...+.|.+-....+ +.+..-+..+ ...=.-...+..++.+.|++.|||=+- .|+-+ -
T Consensus 91 ~d~~~~~L~~Hl~~ai~R~~~g~~i~---n~l~~~i~~~yp~ey~ia~~~~~~i~~~~~i~lp~~E~------~yIal-h 160 (278)
T PRK09772 91 QDSIYISLTDHCQFAIKRFQQNVLLP---NPLLWDIQRLYPKEFQLGEEALTIIDKRLGVQLPKDEV------GFIAM-H 160 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH------HHHHH-H
Confidence 33455555555666777776433222 1111111111 111122345677888899999996552 23322 1
Q ss_pred HhcCCCCCCcccccccC-cHHHHHHHHHHHhhhcCCCCCHHH------HHHHHHHHHHHH
Q 013537 98 FMGNRTNAAKLDFSEIL-PEEVEAGLKEAAMISMGTEVSDLD------LLNIKELCNQVL 150 (441)
Q Consensus 98 ~ignr~n~~~~dLseiL-~~e~~~~i~~aA~~SmG~~lse~D------l~~I~~lc~~vi 150 (441)
+++.+.+. +..+.. -.+++..+.......+|.+|+++. +.++..++.++.
T Consensus 161 i~~a~~~~---~~~~~~~~~~li~~il~~i~~~~~~~~~~ds~~y~rl~~HLk~~~~R~~ 217 (278)
T PRK09772 161 LVSAQMSG---NMEDVAGVTQLMREMLQLIKFQFSLNYQEESLSYQRLVTHLKFLSWRIL 217 (278)
T ss_pred HHHHhccc---chhHHHHHHHHHHHHHHHHHHHhCCccCCCCccHHHHHHHHHHHHHHHH
Confidence 12221111 111111 013344444455667787777653 335556665554
No 25
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=20.95 E-value=1.8e+02 Score=23.16 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc
Q 013537 46 VDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELT 83 (441)
Q Consensus 46 ~D~mIvqai~LLddLDkEIn~~~mrvrEwY~~hFPEL~ 83 (441)
+|..+-.+-..++++..+|+.+...++.-|++ |.|.
T Consensus 2 ~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~--~~lk 37 (92)
T PF05190_consen 2 FDEELDELREEYEEIEEELEELLEEIRKKLGI--PSLK 37 (92)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---TTBE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CcEE
Confidence 46778888999999999999999999999998 6665
No 26
>PLN02914 hexokinase
Probab=20.44 E-value=2.2e+02 Score=31.37 Aligned_cols=66 Identities=23% Similarity=0.377 Sum_probs=41.1
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHH----------------HH-------------------------HHHHHHHHHHHh
Q 013537 127 MISMGTEVSDLDLLNIKELCNQVLS----------------LA-------------------------EYRAQLYDYLKS 165 (441)
Q Consensus 127 ~~SmG~~lse~Dl~~I~~lc~~vi~----------------L~-------------------------e~R~~L~~YL~s 165 (441)
....|.+.+.+|...|..+|+.|.. +. .||+.+.+||..
T Consensus 378 ~~~~~~~~~~~d~~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGSv~~~~p~f~~~l~~~l~e 457 (490)
T PLN02914 378 YDVLGVEASLSARRRVVEVCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGKRTVVAMDGGLYEKYPQYRRYMQDAVTE 457 (490)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCceEEEEEeCchhhcCccHHHHHHHHHHH
Confidence 3446777888999989888877652 11 155566666654
Q ss_pred ccc-cccchhHHHh---chHHHHHHHHhhch
Q 013537 166 RMN-TVAPNLTALV---GELVGARLIAHGGS 192 (441)
Q Consensus 166 RM~-~IAPNLtaLV---G~~vaArLIs~AGs 192 (441)
-+. ..+.++...+ |+-+||-||+...|
T Consensus 458 llg~~~~~~i~i~~a~DGSGvGAAl~AA~~s 488 (490)
T PLN02914 458 LLGLELSKNIAIEHTKDGSGIGAALLAATNS 488 (490)
T ss_pred HhCcccCCcEEEEEccCchHHHHHHHHHHhh
Confidence 331 1122444444 88888888886654
No 27
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=20.40 E-value=95 Score=28.41 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhh
Q 013537 134 VSDLDLLNIKELCNQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKAL 213 (441)
Q Consensus 134 lse~Dl~~I~~lc~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaL 213 (441)
++++||..|+++||.|-+=...=......|..||..=-||..-+-=.++- -|+.-.|.-. +.-=+.+.+
T Consensus 13 l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe-~~vkNCG~~f----------h~evask~F 81 (144)
T cd03568 13 LTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLD-ACAENCGKRF----------HQEVASRDF 81 (144)
T ss_pred CCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHCCHHH----------HHHHhhHHH
Confidence 56779999999999997766666777788899998866665544322222 3444455322 211134444
Q ss_pred hhhhhccCCCCCeeEEeeccccccCCccccchhHHHhhh
Q 013537 214 FRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLAA 252 (441)
Q Consensus 214 FraLktk~~tPK~GlIy~s~lV~~ap~k~KgKiaR~LAa 252 (441)
...|..-...+ .++..+.+|..++-+
T Consensus 82 l~eL~kl~~~~-------------~~~~Vk~kil~li~~ 107 (144)
T cd03568 82 TQELKKLINDR-------------VHPTVKEKLREVVKQ 107 (144)
T ss_pred HHHHHHHhccc-------------CCHHHHHHHHHHHHH
Confidence 44443221111 456777787777644
No 28
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=20.23 E-value=1.3e+02 Score=23.41 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 013537 55 GLLDDLDKELNTYAMRVREWYGWH 78 (441)
Q Consensus 55 ~LLddLDkEIn~~~mrvrEwY~~h 78 (441)
.+|+++|.|+..-..++|.||...
T Consensus 5 ~~l~~fd~Ev~~r~~~lr~~~~~~ 28 (59)
T PF10444_consen 5 AFLQNFDLEVEERIRRLRAQYENL 28 (59)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999998654
Done!