Query 013537
Match_columns 441
No_of_seqs 240 out of 654
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 12:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pla_A NOP5, PRE mRNA splicing 100.0 1.4E-99 5E-104 770.5 21.2 286 2-290 88-378 (388)
2 2nnw_A NOP5/NOP56 related prot 100.0 1.6E-94 5.4E-99 732.6 21.8 277 3-287 98-376 (376)
3 3icx_A PRE mRNA splicing prote 100.0 7.6E-93 2.6E-97 688.7 19.5 243 45-290 2-245 (255)
4 2ozb_B U4/U6 small nuclear rib 100.0 3.3E-90 1.1E-94 672.7 21.7 247 42-288 12-260 (260)
5 1nt2_B Conserved hypothetical 100.0 6.2E-73 2.1E-77 549.4 11.8 206 20-288 47-257 (258)
6 3id6_A NOP5, PRE mRNA splicing 100.0 1.5E-54 5.3E-59 423.5 16.0 172 1-172 87-263 (268)
7 3gqu_A NOP5P protein; RNA bind 100.0 4.1E-52 1.4E-56 380.8 4.7 134 154-290 17-150 (169)
8 4fbj_A CIF, hypothetical prote 50.5 6.3 0.00021 37.8 1.9 66 187-255 99-175 (261)
9 3swh_A MUNC13-1, protein UNC-1 43.9 1.1E+02 0.0038 30.5 9.9 149 54-202 85-261 (341)
10 2a1j_A DNA repair endonuclease 39.6 17 0.00057 27.5 2.4 41 178-218 12-56 (63)
11 1x2i_A HEF helicase/nuclease; 35.6 18 0.00063 27.0 2.1 35 178-212 22-59 (75)
12 2a1j_B DNA excision repair pro 34.4 34 0.0012 27.1 3.6 35 178-212 40-77 (91)
13 3oiq_A Cell division control p 32.9 6.7 0.00023 37.7 -0.9 118 67-184 78-229 (233)
14 1z00_A DNA excision repair pro 31.0 29 0.00098 27.3 2.6 42 178-219 27-73 (89)
15 3efy_A CIF (cell cycle inhibit 29.7 29 0.001 31.9 2.7 49 195-243 45-98 (195)
16 1kea_A Possible G-T mismatches 25.7 2.5E+02 0.0084 25.7 8.4 24 59-82 4-27 (221)
17 3mqm_A Probable histone-lysine 24.6 1.4E+02 0.0048 24.9 6.0 29 152-180 97-125 (126)
18 4f8c_A Cycle inhibiting factor 23.3 42 0.0014 32.3 2.7 49 195-243 139-192 (275)
No 1
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=100.00 E-value=1.4e-99 Score=770.47 Aligned_cols=286 Identities=39% Similarity=0.581 Sum_probs=278.2
Q ss_pred hhHHHHHhhHHHHhc--CCC--cCCchhhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013537 2 ELMRGVRSQLTELIS--GLA--VQDIQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGW 77 (441)
Q Consensus 2 el~R~iR~~~~~l~~--~l~--~~d~~~~~lgLshslsr~Klk~s~~k~D~mIvqai~LLddLDkEIn~~~mrvrEwY~~ 77 (441)
.++|+||+|+.+|+. |+. +.|+..|.+||+|++||+||+|+++++|+||||||+++|+||+|||+|||||||||||
T Consensus 88 ~~~~~iR~~~~~~~~~~g~~~~~~d~~~~~~~l~~~~sr~kvk~~~~k~D~~Ivqai~lld~iDkein~~~~rvrewY~~ 167 (388)
T 3pla_A 88 KVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSI 167 (388)
T ss_dssp HHHHHHHHTTTTHHHHTTSSSSSHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHhHhcCCCCChHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999996 566 7799999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccchhccCcHHHHHHHHHhcCCCCCCccccccc-CcHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 013537 78 HFPELTKIIQDNILYAKAVKFMGNRTNAAKLDFSEI-LPEEVEAGLKEAAMISMGTEVSDLDLLNIKELCNQVLSLAEYR 156 (441)
Q Consensus 78 hFPEL~siv~d~~~YakvV~~ignr~n~~~~dLsei-L~~e~~~~i~~aA~~SmG~~lse~Dl~~I~~lc~~vi~L~e~R 156 (441)
|||||++||+||++||++|+.||||.|++..+|+++ +|+++++.|.++|++|||++||++|+.+|..+|++|++|+++|
T Consensus 168 hFPEL~~iV~d~~~Yak~V~~ignr~~~~~~~l~~l~l~~~~~~~I~~aA~~SmG~~ls~~dl~~I~~~~~~v~~L~e~R 247 (388)
T 3pla_A 168 HFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIR 247 (388)
T ss_dssp TCGGGTTTCCCHHHHHHHHHHTCSGGGCCHHHHHTTTCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhcCCHHHHHHHHHHhcCcccCChhhHhhcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeeccccc
Q 013537 157 AQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVG 236 (441)
Q Consensus 157 ~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLktk~~tPK~GlIy~s~lV~ 236 (441)
++|.+||++||..||||||+|||+.||||||+|||||.+||+|||||||||||||+||+||+|+++||||||||||++||
T Consensus 248 ~~L~~Yl~srM~~iAPNLsaLvG~~vaArLIs~AGgL~~LAK~PAstIQiLGAeKalfr~Lkt~~~tPk~G~Iy~s~~V~ 327 (388)
T 3pla_A 248 RNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIH 327 (388)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSHHHHHTSCHHHHTTSSCHHHHHHHHHHTCCCCSCSGGGGSHHHH
T ss_pred HHHHHHHHHHHHhhCCcHHHHhccHHHHHHHHHcCCHHHHhhCChHHHHHhhhhhHHHHHhccCCCCCCeeEEecCHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccchhHHHhhhhHHHHHhhhccCCCCCchhcHHHHHHHHHHHHHhhcCc
Q 013537 237 QAAPKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARLRNLEGKE 290 (441)
Q Consensus 237 ~ap~k~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kLe~~~ 290 (441)
++||++||||+|+||+|||||||||+|+++ .+|.++|++|++||++|+++.
T Consensus 328 ~ap~~~rgKiaR~LAaK~aLAARiD~~~g~---~~G~~lreeie~ri~kl~e~~ 378 (388)
T 3pla_A 328 TSPRWQRGKIARALAAKLAIAARVDAFSGR---FIGDQLNEQLKKRIDEIKEKF 378 (388)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHTCCC---CCHHHHHHHHHHHHHHHHCC-
T ss_pred hCCHHHhHHHHHHHHHHHHHHHhhcccCCc---ccCHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999999853 579999999999999999864
No 2
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=100.00 E-value=1.6e-94 Score=732.58 Aligned_cols=277 Identities=37% Similarity=0.560 Sum_probs=258.1
Q ss_pred hHHHHHhhHHHHhcCCCcCCchhhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 013537 3 LMRGVRSQLTELISGLAVQDIQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPEL 82 (441)
Q Consensus 3 l~R~iR~~~~~l~~~l~~~d~~~~~lgLshslsr~Klk~s~~k~D~mIvqai~LLddLDkEIn~~~mrvrEwY~~hFPEL 82 (441)
+++.||.|+++|+ +.|+..|.+||+|++||+|++|+++++|+||||||+++|+||+|||+||||||||||||||||
T Consensus 98 ~~~~~R~~~~~l~----~~d~~~~~~~l~h~~sr~Kvk~~~~k~D~~Iiqai~llddlDkeIn~~~~rlrewY~~~FPEL 173 (376)
T 2nnw_A 98 AGERLRSNPEEFL----GENWFEEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPEL 173 (376)
T ss_dssp HHHHHHHCTHHHH----CSSHHHHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence 5788999999999 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccCcHHHHHHHHHhcCCCCCCccccccc-CcHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013537 83 TKIIQDNILYAKAVKFMGNRTNAAKLDFSEI-LPEEVEAGLKEAAMISMGTEVSDLDLLNIKELCNQVLSLAEYRAQLYD 161 (441)
Q Consensus 83 ~siv~d~~~YakvV~~ignr~n~~~~dLsei-L~~e~~~~i~~aA~~SmG~~lse~Dl~~I~~lc~~vi~L~e~R~~L~~ 161 (441)
++||+||.+|+++|+.|||+.+++..+|++| ||+++++.|.++|.+|||++|+++|+.+|..+|+++++|+++|++|.+
T Consensus 174 ~~lV~d~~~Y~k~V~~ig~~~~l~~~~L~~i~l~~~~~~~I~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~R~~l~~ 253 (376)
T 2nnw_A 174 DELLPKHPQYVAFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLED 253 (376)
T ss_dssp HHHCCSHHHHHHHHHHTCSGGGCCSHHHHHTTCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHhCCccccCHhhHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988899999 999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeeccccccCCcc
Q 013537 162 YLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPK 241 (441)
Q Consensus 162 YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLktk~~tPK~GlIy~s~lV~~ap~k 241 (441)
||++||..||||||+|||+.||||||+|||||.+||||||||||||||||+||+||+|+++||||||||||++||++||+
T Consensus 254 yl~~rM~~iAPNLsaLvG~~vaArLIs~AGgL~~LAK~PAstIQiLGAeKalf~~lkt~~~tPk~G~Iy~s~~V~~ap~~ 333 (376)
T 2nnw_A 254 YIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWW 333 (376)
T ss_dssp HHHHHHHHHCHHHHHHHCHHHHHHHHHHHTSHHHHHHSCHHHHHTTTCC-------------CCCCGGGGSHHHHTSCHH
T ss_pred HHHHHHHHhCCCHHHHhChHHHHHHHHHhCCHHHHhhCChHHHHHhccchhhHHHhccCCCCCCceEEeCCHhhccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHhhhhHHHHHhhhccCCCCCchh-cHHHHHHHHHHHHHhh
Q 013537 242 HKGKISRSLAAKTALAIRCDALGDDQDNSM-GLENRAKLEARLRNLE 287 (441)
Q Consensus 242 ~KgKiaR~LAaK~aLAARvDa~~~~~d~~~-G~~~Re~Ie~rl~kLe 287 (441)
+||||+|+||+|||||||||+|+ |.+ |.++|++|++||++|.
T Consensus 334 ~kgKiaR~LAaK~aLAARiD~~~----g~~~G~~lre~ie~rl~~ik 376 (376)
T 2nnw_A 334 QRGKIARALAGKLAIAARVDYFS----GEYIAEELKKELEARIREIK 376 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----CCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC----CcccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999995 355 9999999999999873
No 3
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.6e-93 Score=688.75 Aligned_cols=243 Identities=41% Similarity=0.639 Sum_probs=219.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhccCcHHHHHHHHHhcCCCCCCccccccc-CcHHHHHHHH
Q 013537 45 KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNILYAKAVKFMGNRTNAAKLDFSEI-LPEEVEAGLK 123 (441)
Q Consensus 45 k~D~mIvqai~LLddLDkEIn~~~mrvrEwY~~hFPEL~siv~d~~~YakvV~~ignr~n~~~~dLsei-L~~e~~~~i~ 123 (441)
++|+||||||++||+||+|||+||||||||||||||||++||+||++|+++|+.||||.|++..+|+++ +|+++++.|.
T Consensus 2 k~D~~Iiqai~lld~iDkein~~~~rvrewY~~~FPEL~~iv~d~~~Yak~V~~ig~~~~~~~~~l~~l~l~~~~~~~i~ 81 (255)
T 3icx_A 2 KRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRIL 81 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHCCCHHHHHHHHHHTCSGGGCCHHHHHTTTCCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcchHhhcCCHHHHHHHHHHHcCCCCCChhhHHHccCCHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchh
Q 013537 124 EAAMISMGTEVSDLDLLNIKELCNQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGST 203 (441)
Q Consensus 124 ~aA~~SmG~~lse~Dl~~I~~lc~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PASt 203 (441)
++|++|||++||++|+.+|..+|++|++|+++|++|.+||++||..||||||+|||+.||||||+|||||.+||||||||
T Consensus 82 ~aa~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG~~vaArLIs~AGgL~~LAk~PAst 161 (255)
T 3icx_A 82 DAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPAST 161 (255)
T ss_dssp HHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCHHHHHHHHHHHSSHHHHTTSCHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHhccHHHHHHHHHcCCHHHHhhCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhchhhhhhhhhhccCCCCCeeEEeeccccccCCccccchhHHHhhhhHHHHHhhhccCCCCCchhcHHHHHHHHHHH
Q 013537 204 VQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARL 283 (441)
Q Consensus 204 IQiLGAEKaLFraLktk~~tPK~GlIy~s~lV~~ap~k~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl 283 (441)
||||||||+||+||+|+++||||||||||++||++||++||||+|+||+||+||||||+|+++ .+|.++|++|++||
T Consensus 162 IqiLGAeKalfr~lkt~~~tPk~G~Iy~s~~V~~ap~~~rgkiaR~LAaK~aLAARiD~~~g~---~~G~~lre~ie~ri 238 (255)
T 3icx_A 162 IQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGR---FIGDQLNEQLKKRI 238 (255)
T ss_dssp HTTCC-------------------GGGGSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCc---ccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999853 57999999999999
Q ss_pred HHhhcCc
Q 013537 284 RNLEGKE 290 (441)
Q Consensus 284 ~kLe~~~ 290 (441)
++|+++.
T Consensus 239 ~kl~e~~ 245 (255)
T 3icx_A 239 DEIKEKF 245 (255)
T ss_dssp HHHHTTC
T ss_pred HHHhCcc
Confidence 9999864
No 4
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=100.00 E-value=3.3e-90 Score=672.69 Aligned_cols=247 Identities=27% Similarity=0.512 Sum_probs=230.9
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhccCcHHHHHHHHHhcCCCCCC--cccccccCcHHHH
Q 013537 42 SADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNILYAKAVKFMGNRTNAA--KLDFSEILPEEVE 119 (441)
Q Consensus 42 s~~k~D~mIvqai~LLddLDkEIn~~~mrvrEwY~~hFPEL~siv~d~~~YakvV~~ignr~n~~--~~dLseiL~~e~~ 119 (441)
..+..+.||||||+++|+||+|||+||||||||||||||||++||+||++|+++|+.|||+.++. ..+|++||+++++
T Consensus 12 e~~~eY~~Ivqa~~lld~idkein~~~~rlre~Y~~~FPEL~~lv~~~~~Y~~~V~~ig~~~~~~~~~~~L~~iL~~~~~ 91 (260)
T 2ozb_B 12 EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATI 91 (260)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCTTCTTGGGTSCHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHHHhcCHHHHHHHHHHhCCchhhccchHHHHHHcCHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999998875 4569999999999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcC
Q 013537 120 AGLKEAAMISMGTEVSDLDLLNIKELCNQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQ 199 (441)
Q Consensus 120 ~~i~~aA~~SmG~~lse~Dl~~I~~lc~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~ 199 (441)
+.|.++|.+|||++|+++|+.+|..+|++|++|+++|++|.+||++||..||||||+|||+.||||||+|||||.+||||
T Consensus 92 ~~i~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG~~vaArLI~~AGsL~~Lak~ 171 (260)
T 2ozb_B 92 MVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKM 171 (260)
T ss_dssp HHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTS
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcHHHHHHHHHhCCHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhchhhhhhhhhhccCCCCCeeEEeeccccccCCccccchhHHHhhhhHHHHHhhhccCCCCCchhcHHHHHHH
Q 013537 200 PGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKL 279 (441)
Q Consensus 200 PAStIQiLGAEKaLFraLktk~~tPK~GlIy~s~lV~~ap~k~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~I 279 (441)
||||||+|||||++|+||+|+++||||||||||++||++||++||||+|+||+||+||||||+|++++++.+|.++|++|
T Consensus 172 PastiqiLGaeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgk~~R~lA~K~alAaRiD~~~~~~~~~~G~~lr~~i 251 (260)
T 2ozb_B 172 PACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEI 251 (260)
T ss_dssp CHHHHTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHHHHHHHHHH
T ss_pred CcHHHHHhcccHHHHHhhccCCCCCCeeeEeCCHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 013537 280 EARLRNLEG 288 (441)
Q Consensus 280 e~rl~kLe~ 288 (441)
++||++|++
T Consensus 252 e~rl~~~~e 260 (260)
T 2ozb_B 252 ERKFDKWQE 260 (260)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhcC
Confidence 999999975
No 5
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1
Probab=100.00 E-value=6.2e-73 Score=549.43 Aligned_cols=206 Identities=25% Similarity=0.415 Sum_probs=181.6
Q ss_pred cCCchhhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhccCcHHHHHHHHHh
Q 013537 20 VQDIQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNILYAKAVKFM 99 (441)
Q Consensus 20 ~~d~~~~~lgLshslsr~Klk~s~~k~D~mIvqai~LLddLDkEIn~~~mrvrEwY~~hFPEL~siv~d~~~YakvV~~i 99 (441)
..|+..+.++|+|++||+||+|++++.|+||||||+++|+||++||+||||||||||| |
T Consensus 47 ~~~y~~~l~~~~~~~sr~kvk~~~~~~D~~Iiqai~lld~idkein~~~~rvrewY~~--~------------------- 105 (258)
T 1nt2_B 47 GKDYYRILRKTALAVSEKMVEKELRREDRYVVALVKALEEIDESINMLNEKLEDIRAV--K------------------- 105 (258)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHTT--C-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--C-------------------
Confidence 5788899999999999999999999999999999999999999999999999999998 0
Q ss_pred cCCCCCCcccccccCcHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhc
Q 013537 100 GNRTNAAKLDFSEILPEEVEAGLKEAAMISMGTEVSDLDLLNIKELCNQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVG 179 (441)
Q Consensus 100 gnr~n~~~~dLseiL~~e~~~~i~~aA~~SmG~~lse~Dl~~I~~lc~~vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG 179 (441)
+| +|++ .+|++|++|+++|++|.+||++||..||||||+|||
T Consensus 106 ----------------------------~S---~ise-------~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG 147 (258)
T 1nt2_B 106 ----------------------------ES---EITE-------KFEKKIRELRELRRDVEREIEEVMEKIAPNMTELVG 147 (258)
T ss_dssp ----------------------------CC---TTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHC
T ss_pred ----------------------------CC---cCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHhC
Confidence 12 3443 899999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhh---hcc--CCCCCeeEEeeccccccCCccccchhHHHhhhhH
Q 013537 180 ELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRAL---KTK--HATPKYGLIYHASLVGQAAPKHKGKISRSLAAKT 254 (441)
Q Consensus 180 ~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraL---ktk--~~tPK~GlIy~s~lV~~ap~k~KgKiaR~LAaK~ 254 (441)
+.||||||+|||||.+||+|||||||+|||||++|+|| +|+ ++||||||||||++||++||++||||+|+||+||
T Consensus 148 ~~vaArLI~~AGgL~~LAk~PAstIqiLGAeKalf~~l~~~~t~~~~~~pk~G~Iy~s~~V~~ap~~~rgK~aR~LAaK~ 227 (258)
T 1nt2_B 148 AKVAAKLLERAGSMERLVRLPASKIQVIGAEKSLYKAFARMKKGKKAKIPKHGIIFLHPFIRTLPKAKRGKMARFLAAKL 227 (258)
T ss_dssp HHHHHHHHHHHCSHHHHHTCCHHHHTTSSCC--------------------CCGGGGSHHHHTSCSSSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCCHHHHhhCCHHHHHHhccchHHHhhhhccccccCCCCCCcceEecCHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 998 8999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCchhcHHHHHHHHHHHHHhhc
Q 013537 255 ALAIRCDALGDDQDNSMGLENRAKLEARLRNLEG 288 (441)
Q Consensus 255 aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kLe~ 288 (441)
+||||||+|+ |.+|.++|++|++||++|++
T Consensus 228 aLAARiD~~~----g~~G~~lre~ie~rl~k~~e 257 (258)
T 1nt2_B 228 AIAAKIDYFR----GEIDESLYESIRRRYEELRR 257 (258)
T ss_dssp HHHHHHHHHT----CSCCTHHHHHHHHHHHHCC-
T ss_pred HHHHHHHhhC----CcccHHHHHHHHHHHHHHhh
Confidence 9999999995 57899999999999999976
No 6
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.5e-54 Score=423.48 Aligned_cols=172 Identities=34% Similarity=0.505 Sum_probs=163.9
Q ss_pred ChhHHHHHhhHHHHhc--CCC--cCCchhhhhhhhHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013537 1 MELMRGVRSQLTELIS--GLA--VQDIQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYG 76 (441)
Q Consensus 1 ~el~R~iR~~~~~l~~--~l~--~~d~~~~~lgLshslsr~Klk~s~~k~D~mIvqai~LLddLDkEIn~~~mrvrEwY~ 76 (441)
.+++|+||.|+.+|+. |+. +.|+..|++||+|+|||+||+|+++++|+||||||+|||+||+|||+|+||||||||
T Consensus 87 ~~~~~~iR~~~~~l~~~~G~~~~~~d~~~~~lgl~hs~sR~Klk~~~~k~D~mIIQai~llDdlDkeiN~~~mRvREWY~ 166 (268)
T 3id6_A 87 SKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYS 166 (268)
T ss_dssp CHHHHHHHHTTTHHHHHTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3689999999999996 666 789999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccchhccCcHHHHHHHHHhcCCCCCCccccccc-CcHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 013537 77 WHFPELTKIIQDNILYAKAVKFMGNRTNAAKLDFSEI-LPEEVEAGLKEAAMISMGTEVSDLDLLNIKELCNQVLSLAEY 155 (441)
Q Consensus 77 ~hFPEL~siv~d~~~YakvV~~ignr~n~~~~dLsei-L~~e~~~~i~~aA~~SmG~~lse~Dl~~I~~lc~~vi~L~e~ 155 (441)
||||||++||+||++||++|+.||||.|++..+|++| ||+++++.|.+||.+|||++||+.||.+|..+|++|++|++|
T Consensus 167 ~hFPEL~kiV~d~~~Yak~V~~ig~r~~l~~~~l~~i~l~~~~~~~I~~aA~~SmG~~ise~DL~~I~~~a~~v~~L~e~ 246 (268)
T 3id6_A 167 IHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNI 246 (268)
T ss_dssp TTCTTHHHHCCCHHHHHHHHHHHCSTTSCCHHHHGGGTCCHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccHHHhccCHHHHHHHHHHhCCcccCCcccHhhcCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccc
Q 013537 156 RAQLYDYLKSRMNTVAP 172 (441)
Q Consensus 156 R~~L~~YL~sRM~~IAP 172 (441)
|++|.+||++||..+|-
T Consensus 247 R~~L~~Yl~srM~~~~~ 263 (268)
T 3id6_A 247 RRNLNNYLEGVMKEVAH 263 (268)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999874
No 7
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=100.00 E-value=4.1e-52 Score=380.85 Aligned_cols=134 Identities=44% Similarity=0.641 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhccccccchhHHHhchHHHHHHHHhhchhhhhhcCCchhhhhhchhhhhhhhhhccCCCCCeeEEeecc
Q 013537 154 EYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHAS 233 (441)
Q Consensus 154 e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAEKaLFraLktk~~tPK~GlIy~s~ 233 (441)
..|.+|.+||++||..||||||+|||+.||||||+|||||.+||+|||||||+|||||++|+||+|+++||||||||||+
T Consensus 17 ~~~~~L~~Yl~srM~~iAPNLsaLvG~~vaArLI~~AGgL~~LAK~PAsnIqvLGAeKalf~~l~t~~~~pk~G~Iy~s~ 96 (169)
T 3gqu_A 17 IGAGGLEDYIDKAMDDVAPNLKALVGAKLGARLISLAGGLKELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYP 96 (169)
T ss_dssp ---CCHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHTSHHHHHTCCSHHHHTSCC----------------CCGGGGSH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHhChHHHHHHHHHhCCHHHHhhCCHHHHHHHhhhhHHHHHHhcCCCCCCCCEEEeCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccccchhHHHhhhhHHHHHhhhccCCCCCchhcHHHHHHHHHHHHHhhcCc
Q 013537 234 LVGQAAPKHKGKISRSLAAKTALAIRCDALGDDQDNSMGLENRAKLEARLRNLEGKE 290 (441)
Q Consensus 234 lV~~ap~k~KgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~Re~Ie~rl~kLe~~~ 290 (441)
||+++|+++||||+|+||+||+||||||+|+++ .+|..+|++|++||++|.+.-
T Consensus 97 lV~~~p~~~rgK~aR~LAaK~aLAARiD~~~g~---~~G~~lreeie~riekl~e~~ 150 (169)
T 3gqu_A 97 AINRSPWWQRGKIARALAGKLAIAARVDYFSGE---YIAEELKKELEARIKEIKEKY 150 (169)
T ss_dssp HHHTSCTTTHHHHHHHHHHHHHHHHHHHHHTCC---CCCTTHHHHHHHHHHHCCCSC
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHhhcccCCc---ccCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999853 579999999999999999754
No 8
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=50.50 E-value=6.3 Score=37.83 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=41.7
Q ss_pred HHhhchh------hhhhcCCchhhhhhchhh-hhhhh----hhccCCCCCeeEEeeccccccCCccccchhHHHhhhhHH
Q 013537 187 IAHGGSL------LNLAKQPGSTVQILGAEK-ALFRA----LKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLAAKTA 255 (441)
Q Consensus 187 Is~AGsL------~~LAK~PAStIQiLGAEK-aLFra----Lktk~~tPK~GlIy~s~lV~~ap~k~KgKiaR~LAaK~a 255 (441)
++.+|+| +.|+.+|||.=-|+=-.- .|-++ +-...+ +..||||||+|=+++-|.+| ++--+..+.+
T Consensus 99 ~~Qt~~l~~~~faE~l~~L~s~kNyV~~VNDgrLGH~flIDiPa~~~-~r~ayiyQSDLG~Galp~lr--~eDWm~~rg~ 175 (261)
T 4fbj_A 99 MAQTGKIDGNEFAESVDQLSSAKNYVALVNDRRLGHMFLIDIPSNDQ-ETVGYIYQSDLGQGALPPLK--IADWLNSRGK 175 (261)
T ss_dssp HHHHSCBCHHHHHHHGGGSCTTCEEEEEEEETTTTEEEEEEECCCSS-CCEEEEECCBCSCSSSCCBC--HHHHHHHGGG
T ss_pred hhhhcccchHHHHHHHhhhhcccCEEEEEcCCCcceeEEEecCCCCC-CcceEEEecccCCCCCccee--HHHHHhhcCC
Confidence 4677888 578899998754432221 22222 122223 88999999999999999875 4444444433
No 9
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=43.90 E-value=1.1e+02 Score=30.46 Aligned_cols=149 Identities=13% Similarity=0.022 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcc----chhccCcHHHHHHHHH-hcCCCCCCcc--cccccCcH--HHHHHHHH
Q 013537 54 IGLLDDLDKELNTYAMRVREWYGWHFPEL----TKIIQDNILYAKAVKF-MGNRTNAAKL--DFSEILPE--EVEAGLKE 124 (441)
Q Consensus 54 i~LLddLDkEIn~~~mrvrEwY~~hFPEL----~siv~d~~~YakvV~~-ignr~n~~~~--dLseiL~~--e~~~~i~~ 124 (441)
..++++|-+-+..|+..|+.-+..+...- -=++-||++|+|+... +-.......+ ++++++.+ .....+..
T Consensus 85 t~l~~~i~~~~~~Y~~~l~~~~~~~~~~e~~~~~Cv~lNNie~lR~~L~~l~~~l~~~~l~~~~~~~~~~lq~~l~~vl~ 164 (341)
T 3swh_A 85 RRFAKTISNVLLQYADIVSKDFASYCSKEKEKVPCILMNNTQQLRVQLEKMFEAMGGKELDAEASGTLKELQVKLNNVLD 164 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhcccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777788888877776544333221 2255589999998753 3322222211 12222221 11111222
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhccccccchhHHHhchHHHHHH
Q 013537 125 AAMISMGTEVSDLDLLNIKELCNQ------------------VLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARL 186 (441)
Q Consensus 125 aA~~SmG~~lse~Dl~~I~~lc~~------------------vi~L~e~R~~L~~YL~sRM~~IAPNLtaLVG~~vaArL 186 (441)
-+..+.|..+.+.=-..|..++.. -.+.++.-.-|.+||...+..++-+|.-=+-..|--.|
T Consensus 165 ~l~~~~~~~~~~~i~~~v~~m~~~l~~i~~~~~~~~~~~~~~~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~l 244 (341)
T 3swh_A 165 ELSHVFATSFQPHIEECVRQMGDILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKEL 244 (341)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHTCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333333222334443321 13345556677778887777766665544444433333
Q ss_pred HHh-hchhhhhhcCCch
Q 013537 187 IAH-GGSLLNLAKQPGS 202 (441)
Q Consensus 187 Is~-AGsL~~LAK~PAS 202 (441)
-.+ -.++..+.-+|..
T Consensus 245 W~~~l~~l~~~i~lP~~ 261 (341)
T 3swh_A 245 WKLVMNTMERTIVLPPE 261 (341)
T ss_dssp HHHHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHHcccch
Confidence 322 1245555556655
No 10
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=39.63 E-value=17 Score=27.53 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=33.3
Q ss_pred hchHHHHHHHHhhchhhhhhcCCchhh-hhhchhh-h--hhhhhh
Q 013537 178 VGELVGARLIAHGGSLLNLAKQPGSTV-QILGAEK-A--LFRALK 218 (441)
Q Consensus 178 VG~~vaArLIs~AGsL~~LAK~PAStI-QiLGAEK-a--LFraLk 218 (441)
||+--..+|+.|.||+.++...+--.| +++|.+. | +|..|.
T Consensus 12 IG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 12 VNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIH 56 (63)
T ss_dssp CCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHh
Confidence 688899999999999999999998777 5678655 3 466664
No 11
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=35.62 E-value=18 Score=26.95 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=26.5
Q ss_pred hchHHHHHHHHhhchhhhhhcCCchhhhh---hchhhh
Q 013537 178 VGELVGARLIAHGGSLLNLAKQPGSTVQI---LGAEKA 212 (441)
Q Consensus 178 VG~~vaArLIs~AGsL~~LAK~PAStIQi---LGAEKa 212 (441)
||+.++.+|+.+.|++.+|...+...+.- +|..++
T Consensus 22 iG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a 59 (75)
T 1x2i_A 22 VSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIA 59 (75)
T ss_dssp CCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHH
T ss_pred CCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHH
Confidence 68889999999999999988776655542 565544
No 12
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=34.43 E-value=34 Score=27.12 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=27.9
Q ss_pred hchHHHHHHHHhhchhhhhhcCCchhhhh---hchhhh
Q 013537 178 VGELVGARLIAHGGSLLNLAKQPGSTVQI---LGAEKA 212 (441)
Q Consensus 178 VG~~vaArLIs~AGsL~~LAK~PAStIQi---LGAEKa 212 (441)
||+..+.+|+.+.|++.+|...+...++- +|..++
T Consensus 40 IG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a 77 (91)
T 2a1j_B 40 VNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKA 77 (91)
T ss_dssp CCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHH
Confidence 68999999999999999998887766643 566554
No 13
>3oiq_A Cell division control protein 13; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae} PDB: 3oip_A 3nws_A 3nwt_A
Probab=32.87 E-value=6.7 Score=37.67 Aligned_cols=118 Identities=12% Similarity=0.260 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCCccch-------hccCcHHHHH--HHHHhc---CCCCCCcccccccCcHHHHHHHHHHHhhhc-CCC
Q 013537 67 YAMRVREWYGWHFPELTK-------IIQDNILYAK--AVKFMG---NRTNAAKLDFSEILPEEVEAGLKEAAMISM-GTE 133 (441)
Q Consensus 67 ~~mrvrEwY~~hFPEL~s-------iv~d~~~Yak--vV~~ig---nr~n~~~~dLseiL~~e~~~~i~~aA~~Sm-G~~ 133 (441)
....+..||+.-+|||.. .+-+.+.+=+ .|..-| ...+-..+-|.+|.|=++.+++..+.+.|. ++.
T Consensus 78 ~isLL~~~Fdidip~ld~~~~~~~~F~i~dIHl~kLCFv~Ck~~yvt~~~k~sl~LedIkPidl~s~~~~~~~~s~~~~~ 157 (233)
T 3oiq_A 78 TISLLCQYFDIELPDLDSDSGASPTVILRDIHLERLCFSSCKALYVSKHGNYTLFLEDIKPLDLVSVISTISTKSTNSSK 157 (233)
T ss_dssp HHHHHHHHTTCCCCC--------CCEEECCGGGTCCCEEEEEEEEEEETTEEEEEEEEEEECCHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCCchhcccccccCCCccHHHhhhheeeeEEEEEEEEecCCCceEEeeecccccHHHHHHHhhccCccccc
Confidence 334678899999999941 1222222111 111111 011112234777777777776666555333 344
Q ss_pred CCHHHH-------HHHHHHHHHHHHHHH-------------HHHHHHHHHHhccccccchhHHH-hchHHHH
Q 013537 134 VSDLDL-------LNIKELCNQVLSLAE-------------YRAQLYDYLKSRMNTVAPNLTAL-VGELVGA 184 (441)
Q Consensus 134 lse~Dl-------~~I~~lc~~vi~L~e-------------~R~~L~~YL~sRM~~IAPNLtaL-VG~~vaA 184 (441)
.+..+| ..|..+-+.++.+.. |-.++.+||+.|+..+.-+.-++ +-|+.+|
T Consensus 158 ~~~~~~~~~~~~~~ti~~If~NLI~l~~~~~~~FkF~kL~ny~~ef~~~iq~rq~~l~~~~~~~~~NPlF~~ 229 (233)
T 3oiq_A 158 HSSSELISECDLNNSLVDIFNNLIEMNRDEKNRFKFVKLIHYDIELKKFVQDQQKVLSQKSKAAAINPFFVP 229 (233)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHCSSSSCCGGGSTTCCHHHHHHHHHHHTTC---------------
T ss_pred cccchhhhhccchhHHHHHHHHHHHhccccCCCceEEeccCCcHHHHHHHHHHHHHHHHHhhhhccCCCccc
Confidence 444444 567777788887776 56899999999999988777443 6666665
No 14
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=30.96 E-value=29 Score=27.31 Aligned_cols=42 Identities=31% Similarity=0.426 Sum_probs=31.4
Q ss_pred hchHHHHHHHHhhchhhhhhcCCchhhhh---hchhhh--hhhhhhc
Q 013537 178 VGELVGARLIAHGGSLLNLAKQPGSTVQI---LGAEKA--LFRALKT 219 (441)
Q Consensus 178 VG~~vaArLIs~AGsL~~LAK~PAStIQi---LGAEKa--LFraLkt 219 (441)
||+..+-+|+.+.|++.+|...+...++- +|..++ +...|..
T Consensus 27 IG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 27 VNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp CCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998888776643 576655 3444443
No 15
>3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli}
Probab=29.66 E-value=29 Score=31.92 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=32.2
Q ss_pred hhhcCCchhhhhhchhh-hhh----hhhhccCCCCCeeEEeeccccccCCcccc
Q 013537 195 NLAKQPGSTVQILGAEK-ALF----RALKTKHATPKYGLIYHASLVGQAAPKHK 243 (441)
Q Consensus 195 ~LAK~PAStIQiLGAEK-aLF----raLktk~~tPK~GlIy~s~lV~~ap~k~K 243 (441)
.|+.||+|+=-|+=-.- .|- --+-...+.+.-||||||+|=+.+-|.+|
T Consensus 45 ~l~~l~s~knyV~~VNDgrLGH~fliDiP~~~n~~r~ayiyQSDLG~galp~lr 98 (195)
T 3efy_A 45 RLSCMPECKSFVLRVNDGALGHAYIVDIPKGENSCRPAFLYQSDLGEGVTRKLR 98 (195)
T ss_dssp HHHTCCTTSEEEEEEEETTTTEEEEEEECSCCSTTCEEEEECCBCSSSSSCCBC
T ss_pred HHhhhhcccCEEEEEcCCCcceeEEEecCCCCCCCcceEEEecccCCcccccee
Confidence 56778887644432221 121 22234457889999999999999988775
No 16
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=25.73 E-value=2.5e+02 Score=25.72 Aligned_cols=24 Identities=4% Similarity=0.191 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcc
Q 013537 59 DLDKELNTYAMRVREWYGWHFPEL 82 (441)
Q Consensus 59 dLDkEIn~~~mrvrEwY~~hFPEL 82 (441)
-++.++..+..+|.+||..+...+
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~~~ 27 (221)
T 1kea_A 4 ATNKKRKVFVSTILTFWNTDRRDF 27 (221)
T ss_dssp THHHHHHHHHHHHHHHHHHSCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhC
Confidence 356677889999999998874433
No 17
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=24.64 E-value=1.4e+02 Score=24.93 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhccccccchhHHHhch
Q 013537 152 LAEYRAQLYDYLKSRMNTVAPNLTALVGE 180 (441)
Q Consensus 152 L~e~R~~L~~YL~sRM~~IAPNLtaLVG~ 180 (441)
+...=..|..+...+|..+.|.|-.++|+
T Consensus 97 ~~~~A~~L~~~f~~~~~~~~~~l~~i~ge 125 (126)
T 3mqm_A 97 VGRDVCRLRKAYYNARHEASAQIDEIVGE 125 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34445678888899999999999999997
No 18
>4f8c_A Cycle inhibiting factor; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.95A {Yersinia pseudotuberculosis}
Probab=23.26 E-value=42 Score=32.35 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=32.3
Q ss_pred hhhcCCchhhhhhchhh-hhh----hhhhccCCCCCeeEEeeccccccCCcccc
Q 013537 195 NLAKQPGSTVQILGAEK-ALF----RALKTKHATPKYGLIYHASLVGQAAPKHK 243 (441)
Q Consensus 195 ~LAK~PAStIQiLGAEK-aLF----raLktk~~tPK~GlIy~s~lV~~ap~k~K 243 (441)
.|+.||+|.=-|+=-.- .|- --+-...+.+.-||||||+|=+.+-|.+|
T Consensus 139 ~l~~L~s~KnyV~~VNDgrLGH~flIDiPa~~n~~r~ayiyQSDLG~Galp~lr 192 (275)
T 4f8c_A 139 RLASLPAHKNFILRVNDGGLGHAYVIDFPATTNPSRDAFLYQSDLGEGVTREVR 192 (275)
T ss_dssp HHHTCCTTSEEEEEEEETTTTEEEEEEECCCSSSSCEEEEECCBCCCSSSCCBC
T ss_pred HHhhhhcccCEEEEEcCCCcceeEEEecCCCCCCCcceEEEecccCCCCCccee
Confidence 56778888644432211 121 12234457889999999999999998875
Done!