BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013539
         (441 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2P01|A Chain A, The Structure Of Receptor-Associated Protein(Rap)
 pdb|2P03|A Chain A, The Structure Of Receptor-Associated Protein(Rap)
          Length = 323

 Score = 30.4 bits (67), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 63  GFCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFETCDNGSTVSSKKVQDSQKDGDSK 121
            F + LK F  EA+IEK +     L++AH   ++ E+  +G  VS  + + +  +G +K
Sbjct: 242 AFREELKHF--EAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTK 298


>pdb|2FTU|A Chain A, Solution Structure Of Domain 3 Of Rap
          Length = 118

 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 63  GFCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFETCDNGSTVSSKKVQDSQKDGDSK 121
            F + LK F  EA+IEK +     L++AH   ++ E+  +G  VS  + + +  +G +K
Sbjct: 37  AFREELKHF--EAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTK 93


>pdb|2FCW|A Chain A, Structure Of A Complex Between The Pair Of The Ldl
           Receptor Ligand-Binding Modules 3-4 And The Receptor
           Associated Protein (Rap)
          Length = 109

 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 63  GFCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFETCDNGSTVSSKKVQDSQKDGDSK 121
            F + LK F  EA+IEK +     L++AH   ++ E+  +G  VS  + + +  +G +K
Sbjct: 28  AFREELKHF--EAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTK 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.303    0.122    0.321 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,066,570
Number of Sequences: 62578
Number of extensions: 416796
Number of successful extensions: 762
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 47
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 53 (25.0 bits)