Query 013539
Match_columns 441
No_of_seqs 117 out of 161
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 04:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05022 SRP40_C: SRP40, C-ter 100.0 4.1E-33 9E-38 224.5 4.7 72 361-435 1-72 (72)
2 KOG2992 Nucleolar GTPase/ATPas 99.7 7.1E-18 1.5E-22 172.5 2.8 79 357-438 368-446 (446)
3 smart00667 LisH Lissencephaly 96.6 0.0031 6.7E-08 41.3 3.7 32 47-78 2-33 (34)
4 PF08513 LisH: LisH; InterPro 95.2 0.026 5.7E-07 38.1 3.4 26 50-75 2-27 (27)
5 PF09398 FOP_dimer: FOP N term 57.4 23 0.0005 30.0 4.8 43 48-95 18-60 (81)
6 PF06051 DUF928: Domain of Unk 50.2 7.7 0.00017 36.4 1.1 23 1-23 23-45 (189)
7 smart00576 BTP Bromodomain tra 50.1 12 0.00027 30.1 2.1 21 47-67 4-24 (77)
8 KOG0273 Beta-transducin family 48.3 9.6 0.00021 41.5 1.5 44 50-93 7-50 (524)
9 PF07524 Bromo_TP: Bromodomain 27.4 51 0.0011 26.3 2.2 21 47-67 4-24 (77)
10 PRK12655 fructose-6-phosphate 26.6 56 0.0012 31.7 2.8 56 9-65 103-159 (220)
11 PF12221 HflK_N: Bacterial mem 25.8 51 0.0011 25.0 1.8 17 84-100 18-34 (42)
12 PRK12656 fructose-6-phosphate 25.8 67 0.0015 31.3 3.1 53 9-65 105-161 (222)
13 PRK12558 glutamyl-tRNA synthet 25.8 1.4E+02 0.0029 32.1 5.6 77 17-103 207-297 (445)
14 cd00166 SAM Sterile alpha moti 25.1 82 0.0018 22.7 2.8 22 53-74 5-26 (63)
15 PRK01362 putative translaldola 23.2 77 0.0017 30.6 3.0 56 9-65 101-157 (214)
16 PF01726 LexA_DNA_bind: LexA D 23.0 79 0.0017 25.2 2.6 29 49-77 9-37 (65)
17 smart00454 SAM Sterile alpha m 22.6 99 0.0021 22.3 2.9 24 53-77 7-30 (68)
18 PRK12653 fructose-6-phosphate 20.6 92 0.002 30.2 3.0 55 9-64 103-158 (220)
No 1
>PF05022 SRP40_C: SRP40, C-terminal domain; InterPro: IPR007718 This presumed domain is found at the C terminus of the Saccharomyces cerevisiae SRP40 protein P32583 from SWISSPROT and its homologues. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.
Probab=99.97 E-value=4.1e-33 Score=224.49 Aligned_cols=72 Identities=65% Similarity=0.927 Sum_probs=69.7
Q ss_pred CCCccccCCcceeccccccCCcccccCCCCcchHHHHHhHhccccCCcccccccccccccccCceeecccceeeC
Q 013539 361 KAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKF 435 (441)
Q Consensus 361 ~PFqRV~~e~v~f~D~~L~DNSy~ak~Ga~d~yG~KA~edL~~tRGKgFRkEKnKKKRGSYrGG~ID~svnSiKF 435 (441)
.|||||++++|+|+|++|+||||+++. ++||+|||++|++||||+|||||||||||||+||+||++||||||
T Consensus 1 ~pF~RV~~~~v~~~d~~l~dNsy~~~~---~~~G~kA~~~L~~trGK~FrkEK~KkKRgsy~GG~Id~~v~SiKF 72 (72)
T PF05022_consen 1 KPFQRVDEEKVEFVDERLKDNSYEAKF---DGWGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGQIDTSVNSIKF 72 (72)
T ss_pred CCCcccChhheeecCcccccCCCcccc---ChHHHHHHhhhccccCCCccccccccccccccCCeecCccceeeC
Confidence 499999999999999999999999885 799999999999999999999999999999999999999999999
No 2
>KOG2992 consensus Nucleolar GTPase/ATPase p130 [Nuclear structure]
Probab=99.69 E-value=7.1e-18 Score=172.46 Aligned_cols=79 Identities=48% Similarity=0.699 Sum_probs=67.5
Q ss_pred CCCCCCCccccCCcceeccccccCCcccccCCCCcchHHHHHhHhccccCCcccccccccccccccCceeecccceeeCC
Q 013539 357 PKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFN 436 (441)
Q Consensus 357 ~k~~~PFqRV~~e~v~f~D~~L~DNSy~ak~Ga~d~yG~KA~edL~~tRGKgFRkEKnKKKRGSYrGG~ID~svnSiKFd 436 (441)
..+..|||||++.++.|+-.. |+|..+.|+.++||.+|+++|++|||++|||+|||||||+||||.|++.+++|+|+
T Consensus 368 ~t~~~~~r~~~~~kd~~~~~~---~~~~~~~~~~~~wG~~An~~l~~~rGk~fr~eKtkkkRgsy~gG~I~~~~~s~kF~ 444 (446)
T KOG2992|consen 368 ETKKSPFRRVDPVKDSRVEDI---LSDNKKDGAAGGWGKRANKDLGPGRGKDFRHEKTKKKRGSYRGGSITLDVNSIKFD 444 (446)
T ss_pred ccCCCCccccccccccccccc---cccccccccccccccccccccccccccccccccccccCccccCCcccccccccccC
Confidence 344569999987776654333 55655568889999999999999999999999999999999999999999999999
Q ss_pred CC
Q 013539 437 YS 438 (441)
Q Consensus 437 DS 438 (441)
++
T Consensus 445 ~~ 446 (446)
T KOG2992|consen 445 LS 446 (446)
T ss_pred CC
Confidence 75
No 3
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=96.61 E-value=0.0031 Score=41.27 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHhhhhhccc
Q 013539 47 QKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIE 78 (441)
Q Consensus 47 ~k~ll~~siA~yLe~sGFskTlk~f~sEA~ie 78 (441)
++..|++.|++||.+.||..|...|+.|++++
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 35678899999999999999999999999875
No 4
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=95.21 E-value=0.026 Score=38.08 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcChhHHHHHhhhhh
Q 013539 50 LLLRSVAGYLKSNGFCKTLKKFLSEA 75 (441)
Q Consensus 50 ll~~siA~yLe~sGFskTlk~f~sEA 75 (441)
.|.+-|..||..+||..|-..|+.||
T Consensus 2 ~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 2 ELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 47789999999999999999999986
No 5
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=57.35 E-value=23 Score=29.97 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcChhHHHHHhhhhhccccCCCCCCcccHHHHHHh
Q 013539 48 KVLLLRSVAGYLKSNGFCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCK 95 (441)
Q Consensus 48 k~ll~~siA~yLe~sGFskTlk~f~sEA~ie~~~~~~s~vdLeEm~~k 95 (441)
=.|+..=|..||+-.|+.=||.=|++|+.+-.. ++|-+.|+..
T Consensus 18 g~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~-----~~~R~~L~~e 60 (81)
T PF09398_consen 18 GRLINELIREYLEFNNLDYTLSVFQPESGQPEE-----PLDREFLARE 60 (81)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT---------HHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCccHHHHHhhccCCCCC-----cCCHHHHHHH
Confidence 357788899999999999999999999988653 4676666654
No 6
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=50.17 E-value=7.7 Score=36.38 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.0
Q ss_pred CcccccccceeeCcceeeechhH
Q 013539 1 MPKARALNTISINPSLISFKPRQ 23 (441)
Q Consensus 1 ~~~~~~~~~~~~npsl~~F~PRQ 23 (441)
||...+|.|++.+||+|.|+|-+
T Consensus 23 vP~~~~g~T~~~~PTf~~YvP~~ 45 (189)
T PF06051_consen 23 VPSSNVGLTVSEHPTFWFYVPYT 45 (189)
T ss_pred eCCCCcccccCCCCEEEEEecCC
Confidence 68889999999999999999964
No 7
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=50.08 E-value=12 Score=30.09 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhcChhHH
Q 013539 47 QKVLLLRSVAGYLKSNGFCKT 67 (441)
Q Consensus 47 ~k~ll~~siA~yLe~sGFskT 67 (441)
.+.+|..+||+.|...||.++
T Consensus 4 ~~~ll~~~Vaqil~~~Gf~~~ 24 (77)
T smart00576 4 AFALLRIAVAQILESAGFDSF 24 (77)
T ss_pred HHHHHHHHHHHHHHHcCcccc
Confidence 478999999999999999875
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=48.28 E-value=9.6 Score=41.46 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcChhHHHHHhhhhhccccCCCCCCcccHHHHH
Q 013539 50 LLLRSVAGYLKSNGFCKTLKKFLSEAQIEKDDFSDCSLDLAHMC 93 (441)
Q Consensus 50 ll~~siA~yLe~sGFskTlk~f~sEA~ie~~~~~~s~vdLeEm~ 93 (441)
-|..-|-+||+.+||+-|+=.|+-|++|..-+..++.|-+--|+
T Consensus 7 EvN~LV~RYLqE~G~~hsaftf~~Et~is~~n~~~~~vp~gaLi 50 (524)
T KOG0273|consen 7 EVNFLVWRYLQESGFSHSAFTFGIETGISQSNINGSLVPPGALI 50 (524)
T ss_pred HHHHHHHHHHHHcCcceeeEEeeecccccccCCCccccChHHHH
Confidence 35567889999999999999999999999988888666544433
No 9
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=27.40 E-value=51 Score=26.25 Aligned_cols=21 Identities=48% Similarity=0.574 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhcChhHH
Q 013539 47 QKVLLLRSVAGYLKSNGFCKT 67 (441)
Q Consensus 47 ~k~ll~~siA~yLe~sGFskT 67 (441)
.+.+|..+||+-|.+.||..+
T Consensus 4 ~~~~l~~~va~il~~~GF~~~ 24 (77)
T PF07524_consen 4 ARSLLRRSVAQILKHAGFDSA 24 (77)
T ss_pred HHHHHHHHHHHHHHHcCcccc
Confidence 488999999999999999643
No 10
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=26.62 E-value=56 Score=31.72 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=35.9
Q ss_pred ceeeCcceeeechhHHHhhccCCCccccccccccCChh-HHHHHHHHHHHHHHhcChh
Q 013539 9 TISINPSLISFKPRQVLLAKANAEPSMNKSSTRALKPE-QKVLLLRSVAGYLKSNGFC 65 (441)
Q Consensus 9 ~~~~npsl~~F~PRQVlL~~~~~a~~M~~~~~~a~~pe-~k~ll~~siA~yLe~sGFs 65 (441)
-|.+|-|+ .|.+.|.+|+..+.|.-.+---.+..... .=..+++.|.++++..||+
T Consensus 103 GI~vn~T~-vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~~~~~~~~~~~~ 159 (220)
T PRK12655 103 GIPTLGTA-VYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAPE 159 (220)
T ss_pred CCceeEeE-ecCHHHHHHHHHcCCeEEEeecchHhHcCCCHHHHHHHHHHHHHhcCCC
Confidence 47778776 79999999999887654432111110001 1356778888888877763
No 11
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=25.84 E-value=51 Score=24.99 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=14.3
Q ss_pred CCcccHHHHHHhhhhcc
Q 013539 84 DCSLDLAHMCCKYFETC 100 (441)
Q Consensus 84 ~s~vdLeEm~~k~le~~ 100 (441)
..|.||+||+.+|.+.-
T Consensus 18 ~gPPDLdel~r~l~~kl 34 (42)
T PF12221_consen 18 QGPPDLDELFRKLQDKL 34 (42)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 46999999999998743
No 12
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=25.77 E-value=67 Score=31.33 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=35.4
Q ss_pred ceeeCcceeeechhHHHhhccCCCccccccccc----cCChhHHHHHHHHHHHHHHhcChh
Q 013539 9 TISINPSLISFKPRQVLLAKANAEPSMNKSSTR----ALKPEQKVLLLRSVAGYLKSNGFC 65 (441)
Q Consensus 9 ~~~~npsl~~F~PRQVlL~~~~~a~~M~~~~~~----a~~pe~k~ll~~siA~yLe~sGFs 65 (441)
-|.+|-|+ +|.|.|++|+..+-|.-.+---.+ -..| ..+++.|+..++..|++
T Consensus 105 Gi~vn~T~-ifs~~Qa~~Aa~aGa~yvsPyvgRi~d~g~D~---~~~i~~i~~~~~~~~~~ 161 (222)
T PRK12656 105 GYHITATA-IYTVFQGLLAIEAGADYLAPYYNRMENLNIDS---NAVIGQLAEAIDRENSD 161 (222)
T ss_pred CCceEEee-eCCHHHHHHHHHCCCCEEecccchhhhcCCCH---HHHHHHHHHHHHhcCCC
Confidence 47788887 799999999998765433211111 1123 35778888888887774
No 13
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=25.76 E-value=1.4e+02 Score=32.15 Aligned_cols=77 Identities=9% Similarity=0.070 Sum_probs=46.3
Q ss_pred eeechhHHHhhccC--CCcccccc-----------ccccCChhHHHHHHHHHHHHHHhcChhHHHHHhhhhhccccCCCC
Q 013539 17 ISFKPRQVLLAKAN--AEPSMNKS-----------STRALKPEQKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIEKDDFS 83 (441)
Q Consensus 17 ~~F~PRQVlL~~~~--~a~~M~~~-----------~~~a~~pe~k~ll~~siA~yLe~sGFskTlk~f~sEA~ie~~~~~ 83 (441)
+.=+|+|++|-.+- +.|.+++. |++... .+|..|.+++=.|.+|..|+.-...-.++
T Consensus 207 l~~t~~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~--------~sv~~~r~~G~~Peai~n~la~lG~s~~~-- 276 (445)
T PRK12558 207 VTNTAVQIQIFEALGAKPPVFAHLSLLTGADGKGLSKRLGG--------LSIRSLREDGIEPMAIASLLARLGTSDPV-- 276 (445)
T ss_pred hhCCHHHHHHHHHhCCCCCeEEEcccccCCCcccccccCCC--------cCHHHHHHCCCCHHHHHHHHHHHcCCCCC--
Confidence 34579999998764 23444422 332211 46777776666677788877654433222
Q ss_pred CCcccHHHHHHhh-hhccCCC
Q 013539 84 DCSLDLAHMCCKY-FETCDNG 103 (441)
Q Consensus 84 ~s~vdLeEm~~k~-le~~~~~ 103 (441)
.--++++||+..| |+.-+.+
T Consensus 277 ~e~~~~~eli~~F~l~~~~~~ 297 (445)
T PRK12558 277 EPYTSMEELAESFDLSSFSRA 297 (445)
T ss_pred cccCCHHHHHHhCCHhhCCCc
Confidence 2236999999988 5554443
No 14
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=25.07 E-value=82 Score=22.69 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.2
Q ss_pred HHHHHHHHhcChhHHHHHhhhh
Q 013539 53 RSVAGYLKSNGFCKTLKKFLSE 74 (441)
Q Consensus 53 ~siA~yLe~sGFskTlk~f~sE 74 (441)
..|+.||.+.|++..+..|+.+
T Consensus 5 ~~V~~wL~~~~~~~y~~~f~~~ 26 (63)
T cd00166 5 EDVAEWLESLGLGQYADNFREN 26 (63)
T ss_pred HHHHHHHHHcChHHHHHHHHHc
Confidence 6799999999999998888654
No 15
>PRK01362 putative translaldolase; Provisional
Probab=23.21 E-value=77 Score=30.60 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=35.8
Q ss_pred ceeeCcceeeechhHHHhhccCCCccccccccccCChh-HHHHHHHHHHHHHHhcChh
Q 013539 9 TISINPSLISFKPRQVLLAKANAEPSMNKSSTRALKPE-QKVLLLRSVAGYLKSNGFC 65 (441)
Q Consensus 9 ~~~~npsl~~F~PRQVlL~~~~~a~~M~~~~~~a~~pe-~k~ll~~siA~yLe~sGFs 65 (441)
-|.+|-|+ .|.++|++++.++-|.-++---.+.-... .=..+++.+..++...|+.
T Consensus 101 Gi~v~~T~-vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~ 157 (214)
T PRK01362 101 GIKTNVTL-IFSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFD 157 (214)
T ss_pred CCceEEee-ecCHHHHHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCC
Confidence 46778776 79999999999886554432211111111 1356677888888888853
No 16
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=23.02 E-value=79 Score=25.20 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcChhHHHHHhhhhhcc
Q 013539 49 VLLLRSVAGYLKSNGFCKTLKKFLSEAQI 77 (441)
Q Consensus 49 ~ll~~siA~yLe~sGFskTlk~f~sEA~i 77 (441)
.-++.-|..|++..|||-|+..+...-.|
T Consensus 9 ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~ 37 (65)
T PF01726_consen 9 KEVLEFIREYIEENGYPPTVREIAEALGL 37 (65)
T ss_dssp HHHHHHHHHHHHHHSS---HHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhCC
Confidence 34568899999999999999999887766
No 17
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=22.59 E-value=99 Score=22.35 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=19.3
Q ss_pred HHHHHHHHhcChhHHHHHhhhhhcc
Q 013539 53 RSVAGYLKSNGFCKTLKKFLSEAQI 77 (441)
Q Consensus 53 ~siA~yLe~sGFskTlk~f~sEA~i 77 (441)
..|+.||...||+..+..|.. .+|
T Consensus 7 ~~v~~wL~~~g~~~y~~~f~~-~~i 30 (68)
T smart00454 7 ESVADWLESIGLEQYADNFRK-NGI 30 (68)
T ss_pred HHHHHHHHHCChHHHHHHHHH-CCC
Confidence 679999999999997777754 444
No 18
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=20.64 E-value=92 Score=30.20 Aligned_cols=55 Identities=13% Similarity=0.053 Sum_probs=33.5
Q ss_pred ceeeCcceeeechhHHHhhccCCCccccccccccCChh-HHHHHHHHHHHHHHhcCh
Q 013539 9 TISINPSLISFKPRQVLLAKANAEPSMNKSSTRALKPE-QKVLLLRSVAGYLKSNGF 64 (441)
Q Consensus 9 ~~~~npsl~~F~PRQVlL~~~~~a~~M~~~~~~a~~pe-~k~ll~~siA~yLe~sGF 64 (441)
-|.+|-|+ .|.+.|.+|+.++.|.-.+---.+..... .=..+++.|..+++..|+
T Consensus 103 GI~vn~T~-vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~ 158 (220)
T PRK12653 103 GIPTLGTA-VYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAP 158 (220)
T ss_pred CCCeeEEE-ecCHHHHHHHHhcCCcEEEeecChHhhcCCChHHHHHHHHHHHHhcCC
Confidence 36777776 79999999999876554432211110001 123466777777777666
Done!