Query 013539
Match_columns 441
No_of_seqs 117 out of 161
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 12:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uuj_A Platelet-activating fac 96.8 0.0013 4.3E-08 54.8 5.0 39 42-80 4-42 (88)
2 1vyh_C Platelet-activating fac 92.6 0.022 7.6E-07 52.8 0.0 36 43-78 3-38 (410)
3 2xtc_A F-box-like/WD repeat-co 69.1 5 0.00017 33.4 4.2 38 51-88 8-45 (90)
4 2d68_A FOP, FGFR1OP; alpha hel 54.5 18 0.00061 29.6 4.9 43 48-95 18-60 (82)
5 3fes_A ATP-dependent CLP endop 32.1 34 0.0011 28.3 3.3 38 64-101 82-119 (145)
6 3fh2_A Probable ATP-dependent 25.6 57 0.002 26.9 3.6 38 64-101 82-119 (146)
7 3on2_A Probable transcriptiona 25.5 1.4E+02 0.0047 23.5 5.7 53 47-99 13-66 (199)
8 1k6k_A ATP-dependent CLP prote 21.7 1.1E+02 0.0038 24.5 4.6 37 64-100 80-116 (143)
9 3him_A Probable transcriptiona 21.0 1.7E+02 0.0058 23.3 5.4 54 46-99 16-70 (211)
10 3r8r_A Transaldolase; pentose 19.7 27 0.00093 32.5 0.5 56 9-65 102-158 (212)
No 1
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=96.82 E-value=0.0013 Score=54.79 Aligned_cols=39 Identities=33% Similarity=0.555 Sum_probs=35.2
Q ss_pred cCChhHHHHHHHHHHHHHHhcChhHHHHHhhhhhccccC
Q 013539 42 ALKPEQKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIEKD 80 (441)
Q Consensus 42 a~~pe~k~ll~~siA~yLe~sGFskTlk~f~sEA~ie~~ 80 (441)
.|.+-|+.-||.||++||.++||+.++.+|+.|+.|..+
T Consensus 4 iLt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 4 VLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 467889999999999999999999999999999987643
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=92.56 E-value=0.022 Score=52.84 Aligned_cols=36 Identities=36% Similarity=0.593 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHHHHhcChhHHHHHhhhhhccc
Q 013539 43 LKPEQKVLLLRSVAGYLKSNGFCKTLKKFLSEAQIE 78 (441)
Q Consensus 43 ~~pe~k~ll~~siA~yLe~sGFskTlk~f~sEA~ie 78 (441)
|.+.|+..|++.||+||...||..+|..|+.|+.+.
T Consensus 3 ~~~~q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~ 38 (410)
T 1vyh_C 3 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELD 38 (410)
T ss_dssp ------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCC
Confidence 567789999999999999999999999999998764
No 3
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=69.13 E-value=5 Score=33.41 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcChhHHHHHhhhhhccccCCCCCCccc
Q 013539 51 LLRSVAGYLKSNGFCKTLKKFLSEAQIEKDDFSDCSLD 88 (441)
Q Consensus 51 l~~siA~yLe~sGFskTlk~f~sEA~ie~~~~~~s~vd 88 (441)
|.--|-+||+.+||.-|--.|+.|++|..-+.....|-
T Consensus 8 vN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~Vp 45 (90)
T 2xtc_A 8 VNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVP 45 (90)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCC
Confidence 44568899999999999999999999988765544444
No 4
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=54.50 E-value=18 Score=29.57 Aligned_cols=43 Identities=19% Similarity=0.090 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcChhHHHHHhhhhhccccCCCCCCcccHHHHHHh
Q 013539 48 KVLLLRSVAGYLKSNGFCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCK 95 (441)
Q Consensus 48 k~ll~~siA~yLe~sGFskTlk~f~sEA~ie~~~~~~s~vdLeEm~~k 95 (441)
=.++..=|..||+-.|+.=||.=|++|+.+.. -++|=++|+.+
T Consensus 18 GrLi~~LVrEyLef~~l~~TlsVf~pEs~l~~-----~~~~R~~La~e 60 (82)
T 2d68_A 18 GRLVASLVAEFLQFFNLDFTLAVFQPETSTLQ-----GLEGRENLARD 60 (82)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC--------CCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCcchHHhhhhccCCCC-----CCCCHHHHHHH
Confidence 35677889999999999999999999999963 34455555543
No 5
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=32.07 E-value=34 Score=28.34 Aligned_cols=38 Identities=8% Similarity=0.134 Sum_probs=34.4
Q ss_pred hhHHHHHhhhhhccccCCCCCCcccHHHHHHhhhhccC
Q 013539 64 FCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFETCD 101 (441)
Q Consensus 64 FskTlk~f~sEA~ie~~~~~~s~vdLeEm~~k~le~~~ 101 (441)
|+..|...+..|..++..|....|+.|+|+...|+..+
T Consensus 82 ~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~ 119 (145)
T 3fes_A 82 LSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGE 119 (145)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCC
Confidence 88899999999999999999999999999999998654
No 6
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=25.64 E-value=57 Score=26.87 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=33.4
Q ss_pred hhHHHHHhhhhhccccCCCCCCcccHHHHHHhhhhccC
Q 013539 64 FCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFETCD 101 (441)
Q Consensus 64 FskTlk~f~sEA~ie~~~~~~s~vdLeEm~~k~le~~~ 101 (441)
|+..|...+..|..++..|....|+.|+|+..+|+..+
T Consensus 82 ~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~ 119 (146)
T 3fh2_A 82 FTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGE 119 (146)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCC
Confidence 78888888888888888999999999999999997543
No 7
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=25.53 E-value=1.4e+02 Score=23.54 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhcChhH-HHHHhhhhhccccCCCCCCcccHHHHHHhhhhc
Q 013539 47 QKVLLLRSVAGYLKSNGFCK-TLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFET 99 (441)
Q Consensus 47 ~k~ll~~siA~yLe~sGFsk-Tlk~f~sEA~ie~~~~~~s~vdLeEm~~k~le~ 99 (441)
.|..|+.+-..-|...||.. |+...-.+|++-.+.+---=-|-++|+...++.
T Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~ 66 (199)
T 3on2_A 13 LRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPSKHFRDRQALLDALAES 66 (199)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CCCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHHHHhCCHHHHHHHHHHH
Confidence 47777777777778889997 999999999999999988888889888877764
No 8
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=21.73 E-value=1.1e+02 Score=24.55 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=34.2
Q ss_pred hhHHHHHhhhhhccccCCCCCCcccHHHHHHhhhhcc
Q 013539 64 FCKTLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFETC 100 (441)
Q Consensus 64 FskTlk~f~sEA~ie~~~~~~s~vdLeEm~~k~le~~ 100 (441)
|+..|...+..|..++-.+....|+.|+|+..+|+..
T Consensus 80 ~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~ 116 (143)
T 1k6k_A 80 PTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQ 116 (143)
T ss_dssp ECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCc
Confidence 8999999999999999999999999999999999743
No 9
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=20.95 E-value=1.7e+02 Score=23.28 Aligned_cols=54 Identities=4% Similarity=0.012 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHhcChhH-HHHHhhhhhccccCCCCCCcccHHHHHHhhhhc
Q 013539 46 EQKVLLLRSVAGYLKSNGFCK-TLKKFLSEAQIEKDDFSDCSLDLAHMCCKYFET 99 (441)
Q Consensus 46 e~k~ll~~siA~yLe~sGFsk-Tlk~f~sEA~ie~~~~~~s~vdLeEm~~k~le~ 99 (441)
+.|..|+.+...-|...||.. |+...-.+|++-.+.+---=-|-++|+...++.
T Consensus 16 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~ 70 (211)
T 3him_A 16 KAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLE 70 (211)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHHH
Confidence 447788888888888899997 999999999999999988888888888877764
No 10
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=19.69 E-value=27 Score=32.47 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=35.8
Q ss_pred ceeeCcceeeechhHHHhhccCCCccccccccccCCh-hHHHHHHHHHHHHHHhcChh
Q 013539 9 TISINPSLISFKPRQVLLAKANAEPSMNKSSTRALKP-EQKVLLLRSVAGYLKSNGFC 65 (441)
Q Consensus 9 ~~~~npsl~~F~PRQVlL~~~~~a~~M~~~~~~a~~p-e~k~ll~~siA~yLe~sGFs 65 (441)
-|.+|=|| +|.+.|.+|+..+-|.-+.---.+...- .-=..+++.|..|++..||.
T Consensus 102 GI~vn~Tl-ifS~~Qa~~Aa~AGa~yISPfvgRi~d~~~dG~~~v~~i~~~~~~~~~~ 158 (212)
T 3r8r_A 102 GIKTNVTL-IFNANQALLAARAGATYVSPFLGRLDDIGHNGLDLISEVKQIFDIHGLD 158 (212)
T ss_dssp TCCEEEEE-ECSHHHHHHHHHHTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHTCC
T ss_pred CCcEEEEE-eCCHHHHHHHHHcCCeEEEeccchhhhcCCChHHHHHHHHHHHHHcCCC
Confidence 46777775 6999999998877654432110111000 11467889999999999873
Done!