Query 013540
Match_columns 441
No_of_seqs 221 out of 642
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:53:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 2.3E-58 4.9E-63 485.8 38.2 334 96-435 147-528 (577)
2 PF04515 Choline_transpo: Plas 100.0 4.3E-54 9.4E-59 433.7 27.1 282 153-436 2-313 (334)
3 PF06570 DUF1129: Protein of u 71.4 30 0.00065 32.6 9.3 23 154-176 180-202 (206)
4 PF01690 PLRV_ORF5: Potato lea 57.5 8.2 0.00018 40.7 2.7 23 3-25 3-25 (465)
5 PF10110 GPDPase_memb: Membran 54.6 1.4E+02 0.0031 26.3 10.0 31 345-375 105-135 (149)
6 PF11190 DUF2976: Protein of u 51.6 24 0.00052 28.8 4.0 80 21-119 2-81 (87)
7 KOG2322 N-methyl-D-aspartate r 51.1 84 0.0018 30.4 8.2 13 1-13 1-13 (237)
8 PRK09752 adhesin; Provisional 49.7 16 0.00034 43.0 3.6 7 258-264 1064-1070(1250)
9 TIGR02220 phg_TIGR02220 phage 32.2 36 0.00078 27.1 2.1 33 336-375 2-34 (77)
10 PF01690 PLRV_ORF5: Potato lea 32.2 39 0.00086 35.8 3.0 24 8-31 4-27 (465)
11 PHA02844 putative transmembran 30.6 68 0.0015 25.3 3.3 25 96-120 49-73 (75)
12 cd03036 ArsC_like Arsenate Red 30.4 28 0.0006 29.3 1.3 24 351-374 2-25 (111)
13 PF13796 Sensor: Putative sens 25.3 3.8E+02 0.0083 24.2 8.1 32 96-127 143-174 (181)
14 PF06679 DUF1180: Protein of u 25.2 2.5E+02 0.0054 25.7 6.6 22 50-72 97-118 (163)
15 KOG2735 Phosphatidylserine syn 24.2 1.5E+02 0.0033 30.9 5.5 44 4-48 10-56 (466)
16 cd03027 GRX_DEP Glutaredoxin ( 24.1 43 0.00093 25.4 1.3 24 351-374 4-27 (73)
17 PRK13344 spxA transcriptional 23.8 45 0.00098 29.2 1.5 25 350-374 2-26 (132)
18 cd02977 ArsC_family Arsenate R 22.5 48 0.001 27.3 1.3 24 351-374 2-25 (105)
19 PRK12559 transcriptional regul 22.4 33 0.00072 30.0 0.4 25 350-374 2-26 (131)
20 PRK01655 spxA transcriptional 21.5 51 0.0011 28.7 1.4 25 350-374 2-26 (131)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-58 Score=485.77 Aligned_cols=334 Identities=31% Similarity=0.522 Sum_probs=283.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh-------h---------------h--h
Q 013540 96 DYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFWC-------D---------------Q--F 151 (441)
Q Consensus 96 ~~~~ll~~~~~ia~vls~~~l~llr~~~~~li~~~l~~~~~~~~~~~~~~~~~-------~---------------~--~ 151 (441)
.+|+.....+.++.+++.+++.++|++++.++|....++.+.+......+++. + + +
T Consensus 147 ~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~ 226 (577)
T KOG1362|consen 147 RSWYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTL 226 (577)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHH
Confidence 68888889999999999999999999999999987654444333333333321 0 0 1
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccceecc-----
Q 013540 152 --FWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASD----- 224 (441)
Q Consensus 152 --~~giv~~i~~~l~~~~~~~~r~RI~~a~~iL~~a~~~l~~~p~l~~v~~~~~il~~~~~~~w~~~~~g~~~~~----- 224 (441)
..||++.++.++.+++.+.+|+||+++++++|+++|++.+.|++.++|..+.++..+|..+|+.+..+....+
T Consensus 227 l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l~t~~~~~~g 306 (577)
T KOG1362|consen 227 LDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALFLVTSGPNSEG 306 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 3689999999999999999999999999999999999999999999999999999888899998766554443
Q ss_pred -----cCCCc---hHHHHHHHHHHHHHHHHHHhhccccceeeeeeeeecccCCCCCCCCCchHHHHHHHHHhhchhhHHh
Q 013540 225 -----MDDGG---RWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICY 296 (441)
Q Consensus 225 -----~~~~~---~~~l~~~~~f~~~Wt~~vi~~v~~~tvAg~va~WYF~~~~~~~~~p~~~v~~s~~ra~t~sfGSI~~ 296 (441)
.++++ .||++++.. ++|++||++|++|+++||++++|||++++ +++|..|+.+|++|+++||+||+|+
T Consensus 307 g~~~~~~~~~~~~~~~~~vv~~--l~Wt~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~ra~~yhlGSi~~ 382 (577)
T KOG1362|consen 307 GCACTYSGGSLRILFWLLVVGS--LIWTSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRRALRYHLGSICF 382 (577)
T ss_pred CceeeccCCcchhHhHHHHHHH--HHHHHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHHHHHHhccchhh
Confidence 12222 345554443 99999999999999999999999999875 6899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCC--c---chhHHHHHHHHHHHHHHHHHhcHhhHHHHHhcCCchhHHHHHHHHHHHhh
Q 013540 297 GSLFTAAIRTLRWEIRGIRSKIGN--N---ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST 371 (441)
Q Consensus 297 GSLIvaii~~lR~~l~~l~~~~~~--~---~~l~cc~~c~l~~le~~v~~~N~~Ayi~iAi~G~~F~~SAk~a~~L~~~n 371 (441)
|||++++++++|.++|++|++.|+ + +|++||++||+||+|++++|+|||||+|+|+|||+||+||||||+|++||
T Consensus 383 GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N 462 (577)
T KOG1362|consen 383 GSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN 462 (577)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH
Confidence 999999999999999999998764 3 58999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHHH-hhhhhhhhhhhhhhHHHHHHhcc--cchhhhHHHHHHH-HHHHHHHHHhh
Q 013540 372 GVEALVAYDCSGAVLLM-GTIVGGLITGTCAGAWTYTKWHD--RVVMVGSTAMLMG-MVLVSFLLTTR 435 (441)
Q Consensus 372 ~~~ali~~~li~~~l~l-g~~~v~~~~~l~~g~~~y~~~~~--~~~~~~~~af~ig-~~~~~~~~~~~ 435 (441)
+.+++++|.+++++++ ||+ .+.+++.+.|.+.+..+++ ++-++.+.+++|| |+++++++++-
T Consensus 463 -v~~vv~~d~vs~~llflgk~-l~~~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~ 528 (577)
T KOG1362|consen 463 -VLRVVDVDLVSDFLLFLGKL-LGAIGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVL 528 (577)
T ss_pred -HHHHhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999875 555 4444444455565556666 6778999999999 99999999864
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=4.3e-54 Score=433.69 Aligned_cols=282 Identities=27% Similarity=0.514 Sum_probs=247.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccceeccc-----C-
Q 013540 153 WGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDM-----D- 226 (441)
Q Consensus 153 ~giv~~i~~~l~~~~~~~~r~RI~~a~~iL~~a~~~l~~~p~l~~v~~~~~il~~~~~~~w~~~~~g~~~~~~-----~- 226 (441)
.++++++.+++.+++++++||||+++++++|+|++++++||+++++|++..++.++|.++|..+..+..+.+. +
T Consensus 2 ~~ii~~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~ 81 (334)
T PF04515_consen 2 FAIIFLILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCN 81 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 4788888999999999999999999999999999999999999999999999999999999987665443210 0
Q ss_pred ---------------CCchHHHHHHHHHHHHHHHHHHhhccccceeeeeeeeecccCCCCCCCCCchHHHHHHHHHhhch
Q 013540 227 ---------------DGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSL 291 (441)
Q Consensus 227 ---------------~~~~~~l~~~~~f~~~Wt~~vi~~v~~~tvAg~va~WYF~~~~~~~~~p~~~v~~s~~ra~t~sf 291 (441)
|+...++.+|++|+++|+++|++|++|+++||++++|||+++++ ++|+.|+.+|++|+++|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~--~~~~~~~~~s~~~~~~~~~ 159 (334)
T PF04515_consen 82 LPFSSGSISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKP--NMPKSPVLRSLKRALTYHF 159 (334)
T ss_pred CCcccccccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcc--cccchHHHHHHHHHHHHhH
Confidence 11345788999999999999999999999999999999998753 7899999999999999999
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHhhhcCCc-----chhHHHHHHHHHHHHHHHHHhcHhhHHHHHhcCCchhHHHHHHHH
Q 013540 292 GSICYGSLFTAAIRTLRWEIRGIRSKIGNN-----ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWE 366 (441)
Q Consensus 292 GSI~~GSLIvaii~~lR~~l~~l~~~~~~~-----~~l~cc~~c~l~~le~~v~~~N~~Ayi~iAi~G~~F~~SAk~a~~ 366 (441)
||+|+|||+++++|++|.++++++++.+++ +++.||++||++|+|+++||+|||||+|+|+||++||+||||+++
T Consensus 160 GSi~~gSlivaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak~~~~ 239 (334)
T PF04515_consen 160 GSICFGSLIVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAKRAFE 239 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 999999999999999999999999987653 478999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhHHHHHH----hcccchhhhHHHHHHHHHHHHHHHHhhh
Q 013540 367 LFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTK----WHDRVVMVGSTAMLMGMVLVSFLLTTRK 436 (441)
Q Consensus 367 L~~~n~~~ali~~~li~~~l~lg~~~v~~~~~l~~g~~~y~~----~~~~~~~~~~~af~ig~~~~~~~~~~~~ 436 (441)
|++||+.++..+|++.+.++++||+++++++++.+..+.... +.++...+.+.+|++||.+.++++++-.
T Consensus 240 L~~~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~f~~v~~ 313 (334)
T PF04515_consen 240 LIKRNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPALISFFIGYFISSIFMSVYS 313 (334)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988776665443333321 2234678999999999999999998754
No 3
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=71.41 E-value=30 Score=32.57 Aligned_cols=23 Identities=4% Similarity=0.128 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHH
Q 013540 154 GVAFATAAALQFLYVISVIDRLS 176 (441)
Q Consensus 154 giv~~i~~~l~~~~~~~~r~RI~ 176 (441)
..+..+++++.....+++|||-+
T Consensus 180 ~~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 180 PWVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455566666667778888754
No 4
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=57.47 E-value=8.2 Score=40.74 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 013540 3 DSPAPSSNSDPGSISAVDQTGGR 25 (441)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (441)
++|.|.|+|+|.+.+.|.|+.+|
T Consensus 3 ~~p~P~P~P~P~P~P~P~P~PeP 25 (465)
T PF01690_consen 3 DEPPPSPGPSPTPPPPPAPTPEP 25 (465)
T ss_pred CCCCCCCCCCCCCCCCCcccCCC
Confidence 45777777776555444444333
No 5
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=54.60 E-value=1.4e+02 Score=26.33 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=27.8
Q ss_pred hhHHHHHhcCCchhHHHHHHHHHHHhhhhhh
Q 013540 345 YAYVQIAVYGKGFNRSARDAWELFQSTGVEA 375 (441)
Q Consensus 345 ~Ayi~iAi~G~~F~~SAk~a~~L~~~n~~~a 375 (441)
++.-.+.+.++++.+|-|++|++.|+|.++.
T Consensus 105 f~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~ 135 (149)
T PF10110_consen 105 FVLPLIVLENKSFKEALKESWQLTKGRFWRI 135 (149)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCcHHHH
Confidence 5667889999999999999999999998874
No 6
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=51.61 E-value=24 Score=28.84 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=39.1
Q ss_pred CCCCCCccCCCCCCCccCCCCCccchHHHHHHHHHHHHHHHHHHHhhcccccccCCcccccccccccccccccccchHHH
Q 013540 21 QTGGRSRRSTDGSQTLLSESRHWRDVFWLGIFVIHLIGLGFLLSVLGLNRFKKTDRFNISRYTNQKVETKGELTEDYWPI 100 (441)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~D~~f~ilFl~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~~~~l 100 (441)
|+.++|.++ .+++.++.=+-.-+|..-..--++..++| +.++.-.+..|++- + + .+++|--
T Consensus 2 P~~e~Ps~g-~~~~~~~~i~~y~~d~~~l~gLv~~a~af-i~Va~~~i~~y~ei--------r-----~----gK~~W~~ 62 (87)
T PF11190_consen 2 PTVEPPSSG-GGGGIMETIKGYAKDGVLLLGLVLAAAAF-IVVAKAAISTYNEI--------R-----D----GKKTWGD 62 (87)
T ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--------H-----c----CcccHHH
Confidence 445556555 44444433334557765555445554454 24444333333211 1 0 1466776
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013540 101 YAVAGGVGALLGWMWLLLL 119 (441)
Q Consensus 101 l~~~~~ia~vls~~~l~ll 119 (441)
+....++++++-++-++++
T Consensus 63 fg~~~vVGvvLlv~viwLl 81 (87)
T PF11190_consen 63 FGATVVVGVVLLVFVIWLL 81 (87)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 7766666655544444443
No 7
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=51.15 E-value=84 Score=30.43 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCC
Q 013540 1 MSDSPAPSSNSDP 13 (441)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (441)
|++.|.|+|.+++
T Consensus 1 m~~pp~~~~~~~~ 13 (237)
T KOG2322|consen 1 MSGPPPPYPETSS 13 (237)
T ss_pred CCCCCCCCCCCCC
Confidence 7788888888886
No 8
>PRK09752 adhesin; Provisional
Probab=49.72 E-value=16 Score=42.96 Aligned_cols=7 Identities=14% Similarity=0.188 Sum_probs=3.0
Q ss_pred eeeeeee
Q 013540 258 GMVFLVL 264 (441)
Q Consensus 258 g~va~WY 264 (441)
|.++.||
T Consensus 1064 GlYaTWy 1070 (1250)
T PRK09752 1064 GLTSSWF 1070 (1250)
T ss_pred eeEEEEE
Confidence 3444444
No 9
>TIGR02220 phg_TIGR02220 phage conserved hypothetical protein, C-terminal domain. This model represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=32.17 E-value=36 Score=27.14 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=27.8
Q ss_pred HHHHHHhcHhhHHHHHhcCCchhHHHHHHHHHHHhhhhhh
Q 013540 336 ETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEA 375 (441)
Q Consensus 336 e~~v~~~N~~Ayi~iAi~G~~F~~SAk~a~~L~~~n~~~a 375 (441)
+.+++|+|+.+ |+.|-.+++.+.++++.|--+.
T Consensus 2 ~eii~yLN~kt-------g~~y~~~~k~~~~lI~aR~~eg 34 (77)
T TIGR02220 2 KEIIEYLNEKA-------GKSFKHTTAKHKKLIKARWNEG 34 (77)
T ss_pred hHHHHHHHHhc-------CcccccccHhHHHHHHHHHHcC
Confidence 56889999976 9999999999999999874443
No 10
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=32.17 E-value=39 Score=35.79 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCC
Q 013540 8 SSNSDPGSISAVDQTGGRSRRSTD 31 (441)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~ 31 (441)
+|+|+|+++++|.|+..|+..+++
T Consensus 4 ~p~P~P~P~P~P~P~P~P~PePtP 27 (465)
T PF01690_consen 4 EPPPSPGPSPTPPPPPAPTPEPTP 27 (465)
T ss_pred CCCCCCCCCCCCCCCCcccCCCcc
Confidence 455555555555554444444443
No 11
>PHA02844 putative transmembrane protein; Provisional
Probab=30.57 E-value=68 Score=25.33 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=13.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 013540 96 DYWPIYAVAGGVGALLGWMWLLLLG 120 (441)
Q Consensus 96 ~~~~ll~~~~~ia~vls~~~l~llr 120 (441)
..|.+..+..++.+++.+.||.+.|
T Consensus 49 ~~~ii~i~~v~~~~~~~flYLK~~~ 73 (75)
T PHA02844 49 KIWILTIIFVVFATFLTFLYLKAVP 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheec
Confidence 3344444445555666666666544
No 12
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=30.37 E-value=28 Score=29.34 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=22.2
Q ss_pred HhcCCchhHHHHHHHHHHHhhhhh
Q 013540 351 AVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 351 Ai~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
-|||.+-|..+|+|.+++++|+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~ 25 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEHGVD 25 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCc
Confidence 379999999999999999999987
No 13
>PF13796 Sensor: Putative sensor
Probab=25.35 E-value=3.8e+02 Score=24.20 Aligned_cols=32 Identities=31% Similarity=0.276 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 013540 96 DYWPIYAVAGGVGALLGWMWLLLLGSPANQML 127 (441)
Q Consensus 96 ~~~~ll~~~~~ia~vls~~~l~llr~~~~~li 127 (441)
++++--.....+++++-.+...+.+..++.--
T Consensus 143 ~s~~~al~~~~~Gl~~l~~~~~l~~~la~~~~ 174 (181)
T PF13796_consen 143 DSWPGALLAAVVGLVLLLVAPWLLRGLARLHA 174 (181)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554444445566666666666666555433
No 14
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=25.20 E-value=2.5e+02 Score=25.68 Aligned_cols=22 Identities=9% Similarity=0.333 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 013540 50 GIFVIHLIGLGFLLSVLGLNRFK 72 (441)
Q Consensus 50 ilFl~~l~~~~~~~~~~~~~~~~ 72 (441)
.++++..+.. +++.++.++.+.
T Consensus 97 ~~~Vl~g~s~-l~i~yfvir~~R 118 (163)
T PF06679_consen 97 ALYVLVGLSA-LAILYFVIRTFR 118 (163)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHh
Confidence 3444444333 355666666654
No 15
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=24.25 E-value=1.5e+02 Score=30.91 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCC--CCc-cCCCCCccchHH
Q 013540 4 SPAPSSNSDPGSISAVDQTGGRSRRSTDGS--QTL-LSESRHWRDVFW 48 (441)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~D~~f 48 (441)
.|||+..-++|++. .+|++++.+++++.. +-+ -.+.+.+.|+.-
T Consensus 10 ~~~~~t~~~~~~d~-~e~~~~r~~~r~e~~~~~~~~~~ne~~vdDit~ 56 (466)
T KOG2735|consen 10 DPAPTTEVPAGSDS-VEPNGARKLRRDELHEKMHFRMINERVVDDITT 56 (466)
T ss_pred CCCCCCcCCCCCcc-cCCCCccchhhhhhhhhhccCccceeeeccchh
Confidence 35555555556666 899999999999883 444 334455666543
No 16
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=24.14 E-value=43 Score=25.45 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=21.3
Q ss_pred HhcCCchhHHHHHHHHHHHhhhhh
Q 013540 351 AVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 351 Ai~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
-+|+++-|..++++.+++++++++
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~~gi~ 27 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLREKGLP 27 (73)
T ss_pred EEEecCCChhHHHHHHHHHHCCCc
Confidence 378999999999999999999886
No 17
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=23.78 E-value=45 Score=29.15 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=22.9
Q ss_pred HHhcCCchhHHHHHHHHHHHhhhhh
Q 013540 350 IAVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 350 iAi~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
+-|||.+-|..+|+|-+.+++|+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~ 26 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLS 26 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 3489999999999999999999987
No 18
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=22.52 E-value=48 Score=27.32 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=22.2
Q ss_pred HhcCCchhHHHHHHHHHHHhhhhh
Q 013540 351 AVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 351 Ai~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
-+||++-|..+|++-+.+++++++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~ 25 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEHGIE 25 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCC
Confidence 379999999999999999999976
No 19
>PRK12559 transcriptional regulator Spx; Provisional
Probab=22.40 E-value=33 Score=29.96 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.9
Q ss_pred HHhcCCchhHHHHHHHHHHHhhhhh
Q 013540 350 IAVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 350 iAi~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
+-+||.+-|..+|+|-+.++++|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~ 26 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQID 26 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCC
Confidence 4489999999999999999999987
No 20
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=21.52 E-value=51 Score=28.71 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=23.0
Q ss_pred HHhcCCchhHHHHHHHHHHHhhhhh
Q 013540 350 IAVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 350 iAi~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
+-+||++-|..+|++-+.+++||++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~ 26 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIP 26 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCC
Confidence 4589999999999999999999987
Done!