Query 013540
Match_columns 441
No_of_seqs 221 out of 642
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:29:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f0i_A Arsenate reductase; str 22.6 34 0.0012 27.9 1.7 26 349-374 5-30 (119)
2 3rdw_A Putative arsenate reduc 21.4 37 0.0013 27.8 1.7 25 350-374 7-31 (121)
3 3fz4_A Putative arsenate reduc 20.7 31 0.0011 28.3 1.1 26 349-374 4-29 (120)
4 3l78_A Regulatory protein SPX; 19.7 21 0.00071 29.2 -0.2 25 350-374 2-26 (120)
5 3gkx_A Putative ARSC family re 19.0 37 0.0013 27.7 1.2 25 350-374 6-30 (120)
6 1rw1_A Conserved hypothetical 18.3 38 0.0013 27.2 1.1 24 351-374 3-26 (114)
7 2lqo_A Putative glutaredoxin R 18.1 30 0.001 27.0 0.4 25 350-374 6-30 (92)
8 2kok_A Arsenate reductase; bru 17.9 39 0.0013 27.5 1.1 25 350-374 7-31 (120)
9 1s3c_A Arsenate reductase; ARS 17.3 51 0.0018 27.8 1.7 25 350-374 4-28 (141)
10 1w8x_M Protein P30, protein P, 14.1 2.9E+02 0.01 20.1 4.8 22 3-24 4-25 (83)
No 1
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=22.58 E-value=34 Score=27.94 Aligned_cols=26 Identities=15% Similarity=0.432 Sum_probs=23.7
Q ss_pred HHHhcCCchhHHHHHHHHHHHhhhhh
Q 013540 349 QIAVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 349 ~iAi~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
++-+||++-|..+|++-++++++|++
T Consensus 5 ~i~iY~~p~C~~c~ka~~~L~~~gi~ 30 (119)
T 3f0i_A 5 SVVIYHNPKCSKSRETLALLENQGIA 30 (119)
T ss_dssp CCEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCc
Confidence 36689999999999999999999986
No 2
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=21.35 E-value=37 Score=27.85 Aligned_cols=25 Identities=16% Similarity=0.418 Sum_probs=23.0
Q ss_pred HHhcCCchhHHHHHHHHHHHhhhhh
Q 013540 350 IAVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 350 iAi~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
+-+||++-|..+|++-++++++|++
T Consensus 7 i~iY~~p~C~~c~ka~~~L~~~gi~ 31 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLALVEQQGIT 31 (121)
T ss_dssp CEEECCTTCHHHHHHHHHHHTTTCC
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCC
Confidence 5589999999999999999999976
No 3
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=20.65 E-value=31 Score=28.26 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=23.7
Q ss_pred HHHhcCCchhHHHHHHHHHHHhhhhh
Q 013540 349 QIAVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 349 ~iAi~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
++-+||.+-|..+|++-++++++|++
T Consensus 4 Mi~iY~~~~C~~c~ka~~~L~~~gi~ 29 (120)
T 3fz4_A 4 MLTFYEYPKCSTCRRAKAELDDLAWD 29 (120)
T ss_dssp SEEEEECSSCHHHHHHHHHHHHHTCC
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCc
Confidence 45689999999999999999999976
No 4
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=19.73 E-value=21 Score=29.25 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.7
Q ss_pred HHhcCCchhHHHHHHHHHHHhhhhh
Q 013540 350 IAVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 350 iAi~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
+-+||++-|..+|++-++++++|++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~ 26 (120)
T 3l78_A 2 VTLFLSPSCTSCRKARAWLNRHDVV 26 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 4589999999999999999999976
No 5
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=19.00 E-value=37 Score=27.74 Aligned_cols=25 Identities=8% Similarity=0.011 Sum_probs=23.1
Q ss_pred HHhcCCchhHHHHHHHHHHHhhhhh
Q 013540 350 IAVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 350 iAi~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
+-+||++-|..+|++-++++++|++
T Consensus 6 i~iY~~p~C~~c~ka~~~L~~~gi~ 30 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKKWLIENNIE 30 (120)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCChHHHHHHHHHHHcCCc
Confidence 5689999999999999999999976
No 6
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=18.26 E-value=38 Score=27.20 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=22.1
Q ss_pred HhcCCchhHHHHHHHHHHHhhhhh
Q 013540 351 AVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 351 Ai~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
-+||++-|..++++-++++++|++
T Consensus 3 ~iY~~~~C~~C~kak~~L~~~gi~ 26 (114)
T 1rw1_A 3 VLYGIKACDTMKKARTWLDEHKVA 26 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCC
T ss_pred EEEECCCChHHHHHHHHHHHCCCc
Confidence 479999999999999999999887
No 7
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=18.11 E-value=30 Score=26.98 Aligned_cols=25 Identities=4% Similarity=0.139 Sum_probs=20.6
Q ss_pred HHhcCCchhHHHHHHHHHHHhhhhh
Q 013540 350 IAVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 350 iAi~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
+-+|+++.|.-++++-+++++++++
T Consensus 6 I~vYs~~~Cp~C~~aK~~L~~~gi~ 30 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKTALTANRIA 30 (92)
T ss_dssp EEEEECTTCSSHHHHHHHHHHTTCC
T ss_pred EEEEcCCCCHhHHHHHHHHHhcCCc
Confidence 3478888888888888889999886
No 8
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=17.94 E-value=39 Score=27.45 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=23.1
Q ss_pred HHhcCCchhHHHHHHHHHHHhhhhh
Q 013540 350 IAVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 350 iAi~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
+-+||++-|..++++-++++++|++
T Consensus 7 i~iY~~~~C~~C~ka~~~L~~~gi~ 31 (120)
T 2kok_A 7 VTIYGIKNCDTMKKARIWLEDHGID 31 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCChHHHHHHHHHHHcCCc
Confidence 5589999999999999999999887
No 9
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=17.32 E-value=51 Score=27.77 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=23.1
Q ss_pred HHhcCCchhHHHHHHHHHHHhhhhh
Q 013540 350 IAVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 350 iAi~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
+-+||++-|..+|++-++++++|++
T Consensus 4 itiY~~p~C~~crkak~~L~~~gi~ 28 (141)
T 1s3c_A 4 ITIYHNPASGTSRNTLEMIRNSGTE 28 (141)
T ss_dssp CEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCChHHHHHHHHHHHcCCC
Confidence 4589999999999999999999887
No 10
>1w8x_M Protein P30, protein P, GPP; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=14.11 E-value=2.9e+02 Score=20.08 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 013540 3 DSPAPSSNSDPGSISAVDQTGG 24 (441)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ 24 (441)
..|-||.||-|-+-++||-.-.
T Consensus 4 npqfpyagpvpipgpaptetmp 25 (83)
T 1w8x_M 4 NPQFPYAGPVPIPGPAPTETMP 25 (83)
T ss_dssp CSSSCCCSSCCTTCCCCCCCCC
T ss_pred CCCCCcCCCCCCCCCCCccccc
Confidence 3567899988877766776543
Done!