Query 013540
Match_columns 441
No_of_seqs 221 out of 642
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 12:30:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013540.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013540hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 22.7 1.8E+02 0.013 24.8 9.1 53 145-215 22-75 (248)
2 d1rw1a_ c.47.1.12 (A:) Hypothe 18.9 17 0.0012 27.5 1.1 23 352-374 4-26 (114)
3 d1z3ea1 c.47.1.12 (A:1-114) Re 17.0 13 0.00093 28.3 -0.1 25 350-374 2-26 (114)
4 d1nm3a1 c.47.1.1 (A:166-239) C 15.9 23 0.0016 24.3 1.1 24 351-374 8-31 (74)
5 d1egoa_ c.47.1.1 (A:) Glutared 15.8 28 0.0021 24.5 1.6 23 351-373 4-26 (85)
6 d1r7ha_ c.47.1.1 (A:) Glutared 15.2 26 0.0019 23.9 1.2 24 351-374 4-27 (74)
7 d1j9ba_ c.47.1.12 (A:) Arsenat 11.9 42 0.003 26.2 1.7 24 351-374 3-26 (138)
8 d1h75a_ c.47.1.1 (A:) Glutared 11.7 37 0.0027 23.2 1.2 24 351-374 4-27 (76)
9 d2fcra_ c.23.5.1 (A:) Flavodox 9.8 50 0.0036 26.7 1.5 24 353-376 98-121 (173)
10 d1fova_ c.47.1.1 (A:) Glutared 8.7 53 0.0038 22.6 1.1 24 351-374 4-27 (82)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=22.71 E-value=1.8e+02 Score=24.82 Aligned_cols=53 Identities=6% Similarity=0.064 Sum_probs=26.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCchHHHH-HHHHHHHHHHHHHHHH
Q 013540 145 CFWCDQFFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVA-YVFMAVMLLWMGIWSF 215 (441)
Q Consensus 145 ~~~~~~~~~giv~~i~~~l~~~~~~~~r~RI~~a~~iL~~a~~~l~~~p~l~~v~-~~~~il~~~~~~~w~~ 215 (441)
.+..+.|.+++++++..++. .+.+..|| ..|.-++.| ++++++..+|-+++..
T Consensus 22 ~~~~~~~~~a~~~~~~~~~~--~~vy~s~r----------------~~p~kyi~PG~~~l~~Fvi~Pi~yT~ 75 (248)
T d2r6gf1 22 MYAQGEYLFAITTLILSSAG--LYIFANRK----------------AYAWRYVYPGMAGMGLFVLFPLVCTI 75 (248)
T ss_dssp HHGGGCHHHHHHHHHHHHHH--HHHHSSSC----------------CTTHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcchHHHHHHHHHHHHhe--EEEEEccC----------------ccceehhhhHHHHHHHHHHHhheeEE
Confidence 34456677776666554432 23333444 356666665 3344444444444443
No 2
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=18.93 E-value=17 Score=27.46 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=21.9
Q ss_pred hcCCchhHHHHHHHHHHHhhhhh
Q 013540 352 VYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 352 i~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
+||.+=|.++|+|.+.+++||++
T Consensus 4 iY~~p~Cs~srka~~~L~~~~i~ 26 (114)
T d1rw1a_ 4 LYGIKACDTMKKARTWLDEHKVA 26 (114)
T ss_dssp EEECSSCHHHHHHHHHHHHTTCC
T ss_pred EEECCCChHHHHHHHHHHHcCCC
Confidence 79999999999999999999987
No 3
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=17.01 E-value=13 Score=28.30 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.9
Q ss_pred HHhcCCchhHHHHHHHHHHHhhhhh
Q 013540 350 IAVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 350 iAi~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
+-+||.+=|.++|+|.+.+++|+++
T Consensus 2 i~ly~~~~C~~~rka~~~L~~~~i~ 26 (114)
T d1z3ea1 2 VTLYTSPSCTSCRKARAWLEEHEIP 26 (114)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCC
Confidence 3479999999999999999999997
No 4
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=15.91 E-value=23 Score=24.26 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=18.8
Q ss_pred HhcCCchhHHHHHHHHHHHhhhhh
Q 013540 351 AVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 351 Ai~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
-||+++.|.=++++-+++++++++
T Consensus 8 ~iYs~~~C~~C~~ak~lL~~~~i~ 31 (74)
T d1nm3a1 8 SIFTKPGCPFCAKAKQLLHDKGLS 31 (74)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTCC
T ss_pred EEEECCCCHHHHHHHHHHHHcCCC
Confidence 467777777777788889998875
No 5
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}
Probab=15.76 E-value=28 Score=24.46 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=17.0
Q ss_pred HhcCCchhHHHHHHHHHHHhhhh
Q 013540 351 AVYGKGFNRSARDAWELFQSTGV 373 (441)
Q Consensus 351 Ai~G~~F~~SAk~a~~L~~~n~~ 373 (441)
-||+++.|+-++++-+++++++.
T Consensus 4 viysk~~Cp~C~~aK~ll~~~~~ 26 (85)
T d1egoa_ 4 VIFGRSGCPYCVRAKDLAEKLSN 26 (85)
T ss_dssp EEECCTTSTHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHhHHHHHHHHHHcCC
Confidence 36777777777777788887654
No 6
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=15.22 E-value=26 Score=23.86 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=20.4
Q ss_pred HhcCCchhHHHHHHHHHHHhhhhh
Q 013540 351 AVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 351 Ai~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
-+|+++.|.-++++-+++++++++
T Consensus 4 ~iYt~~~C~~C~~ak~~L~~~~i~ 27 (74)
T d1r7ha_ 4 TLYTKPACVQCTATKKALDRAGLA 27 (74)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTCC
T ss_pred EEEeCCCChhHHHHHHHHHHcCCc
Confidence 478888888888888899999887
No 7
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=11.92 E-value=42 Score=26.16 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=22.2
Q ss_pred HhcCCchhHHHHHHHHHHHhhhhh
Q 013540 351 AVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 351 Ai~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
-+||.+=|..+|+|.++++.++++
T Consensus 3 ~iY~~p~Cs~srkal~~L~~~~i~ 26 (138)
T d1j9ba_ 3 TIYHNPACGTSRNTLEMIRNSGTE 26 (138)
T ss_dssp EEECCTTCHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCHHHHHHHHHHHHCCCC
Confidence 479999999999999999999986
No 8
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=11.74 E-value=37 Score=23.19 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=20.2
Q ss_pred HhcCCchhHHHHHHHHHHHhhhhh
Q 013540 351 AVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 351 Ai~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
-+|+++-|.-++++-+++.+++++
T Consensus 4 ~iYs~~~C~~C~~ak~~L~~~~i~ 27 (76)
T d1h75a_ 4 TIYTRNDCVQCHATKRAMENRGFD 27 (76)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTCC
T ss_pred EEEeCCCCccHHHHHHHHHhcCce
Confidence 378888888888888899999887
No 9
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
Probab=9.77 E-value=50 Score=26.66 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=21.4
Q ss_pred cCCchhHHHHHHHHHHHhhhhhhh
Q 013540 353 YGKGFNRSARDAWELFQSTGVEAL 376 (441)
Q Consensus 353 ~G~~F~~SAk~a~~L~~~n~~~al 376 (441)
|++.||+++|+-.+.++++|...|
T Consensus 98 y~~~F~~a~~~l~~~l~~~GA~~I 121 (173)
T d2fcra_ 98 YPDNFCDAIEEIHDCFAKQGAKPV 121 (173)
T ss_dssp CTTSTTTHHHHHHHHHHHTTCEEE
T ss_pred chhhHHHHHHHHHHHHHhCCCEEe
Confidence 678999999999999999998754
No 10
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}
Probab=8.65 E-value=53 Score=22.61 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=17.7
Q ss_pred HhcCCchhHHHHHHHHHHHhhhhh
Q 013540 351 AVYGKGFNRSARDAWELFQSTGVE 374 (441)
Q Consensus 351 Ai~G~~F~~SAk~a~~L~~~n~~~ 374 (441)
-||+++.|.=++++-++++++++.
T Consensus 4 ~iys~~~Cp~C~~ak~~L~~~~i~ 27 (82)
T d1fova_ 4 EIYTKETCPYCHRAKALLSSKGVS 27 (82)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTCC
T ss_pred EEEeCCCCHhHHHHHHHHHHcCCC
Confidence 367777777777777788888776
Done!