BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013541
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RKG|A Chain A, Structural And Functional Characterization Of The Yeast
Mg2+ Channel Mrs2
Length = 261
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 35/176 (19%)
Query: 94 TILGREKAIVVNLEQIRCIITADEVLLLNSLDSY------VLQYVVELQRRLTAAGVNEV 147
TI+ + IV+NL I+ +I D+V + ++ + VL Y +L+ +L++ N
Sbjct: 64 TIMCKPNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMY--DLESKLSSTKNNSQ 121
Query: 148 WQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLL 207
+ R +++F N ALE + L SQ +L
Sbjct: 122 FYEH--------RALESIFINV--------MSALETDFK-----LHSQIC------IQIL 154
Query: 208 DELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKS 263
++L ++++ L L + L ++ +RD +++L+++D D+A MYLT KKS
Sbjct: 155 NDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS 210
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 321 STTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQL 372
S D+ +LEML+E Y+ D + + SL + I TE+ +NI LD RN L
Sbjct: 210 SPKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL 261
>pdb|4EV6|A Chain A, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
pdb|4EV6|B Chain B, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
pdb|4EV6|C Chain C, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
pdb|4EV6|D Chain D, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
pdb|4EV6|E Chain E, The Complete Structure Of Cora Magnesium Transporter From
Methanocaldococcus Jannaschii
Length = 339
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 361 INIQLDNVR-NQLIQFELLLTTATFVVAIFGVVAGIFGMNFA-IPFFDEPAAFKWVLIIT 418
I + L+N++ NQ+++ +LT T + A+ + GI+GMNF+ +P + P F W+++
Sbjct: 266 ITLSLENIKMNQIMK---ILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGF-WLVM-- 319
Query: 419 GVCGIIIFCAFVWFFK 434
++I FV+ F+
Sbjct: 320 -ALMVVIIMIFVYIFR 334
>pdb|2BBJ|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2BBJ|F Chain F, Crystal Structure Of The Cora Mg2+ Transporter
pdb|2HN2|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|C Chain C, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
pdb|2HN2|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter Homologue
From T. Maritima In Complex With Divalent Cations
Length = 354
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 339 VIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGM 398
V D T+ +++ + D +++ L +V N+ + +LT + +AGI+GM
Sbjct: 257 VYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGIYGM 316
Query: 399 NFA-IPFFDEPAAFKWVLIITGVCGIIIFCAF 429
NF +P + VL + GV +I+ F
Sbjct: 317 NFEYMPELRWKWGYPVVLAVMGVIAVIMVVYF 348
>pdb|2IUB|A Chain A, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|B Chain B, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|C Chain C, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|D Chain D, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|E Chain E, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|F Chain F, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|G Chain G, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|H Chain H, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|I Chain I, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution.
pdb|2IUB|J Chain J, Crystal Structure Of A Divalent Metal Ion Transporter Cora
At 2.9 A Resolution
Length = 363
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 339 VIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGM 398
V D T+ +++ + D +++ L +V N+ + +LT + +AGI+GM
Sbjct: 266 VYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGIYGM 325
Query: 399 NFA-IPFFDEPAAFKWVLIITGVCGIIIFCAF 429
NF +P + VL + GV +I+ F
Sbjct: 326 NFEYMPELRWKWGYPVVLAVMGVIAVIMVVYF 357
>pdb|4EEB|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EEB|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Absence
pdb|4EED|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Presence
pdb|4EED|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Presence
Length = 330
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 339 VIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGM 398
V D T+ +++ + D +++ L +V N+ + +LT + +AGI+GM
Sbjct: 233 VYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGIYGM 292
Query: 399 NFA-IPFFDEPAAFKWVLIITGVCGIIIFCAF 429
NF +P + VL + GV +I+ F
Sbjct: 293 NFEYMPELRWKWGYPVVLAVMGVIAVIMVVYF 324
>pdb|3VH0|A Chain A, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|B Chain B, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|C Chain C, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|D Chain D, Crystal Structure Of E. Coli Ynce Complexed With Dna
Length = 353
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 337 FVVIDSTLNKLTSLKEYIDDTED--FINIQLDNVR 369
+ ID+ NK+ S K+ +DD ++ FINI LD R
Sbjct: 208 LITIDTADNKILSRKKLLDDGKEHFFINISLDTAR 242
>pdb|3VGZ|A Chain A, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|B Chain B, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|C Chain C, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|D Chain D, Crystal Structure Of E. Coli Ynce
Length = 353
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 337 FVVIDSTLNKLTSLKEYIDDTED--FINIQLDNVR 369
+ ID+ NK+ S K+ +DD ++ FINI LD R
Sbjct: 208 LITIDTADNKILSRKKLLDDGKEHFFINISLDTAR 242
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 17/98 (17%)
Query: 153 DTNRRRS-RNFDNVFGNTSPDYLPFEFRAL-------EVALEAACTFLD--SQAAELEIE 202
+TNRRR+ + N+ +P+ + E RA+ E LEA + D + AELE+
Sbjct: 560 ETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPLEADLSGEDLRERIAELELA 619
Query: 203 AYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVR 240
+ L+ ER RL+ + AL R+Q VR
Sbjct: 620 MW-------QAAEALDFERAARLRDEIRALEARLQGVR 650
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 17/98 (17%)
Query: 153 DTNRRRS-RNFDNVFGNTSPDYLPFEFRAL-------EVALEAACTFLD--SQAAELEIE 202
+TNRRR+ + N+ +P+ + E RA+ E LEA + D + AELE+
Sbjct: 561 ETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPLEADLSGEDLRERIAELELA 620
Query: 203 AYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVR 240
+ L+ ER RL+ + AL R+Q VR
Sbjct: 621 MW-------QAAEALDFERAARLRDEIRALEARLQGVR 651
>pdb|1U6I|A Chain A, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|B Chain B, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|C Chain C, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|D Chain D, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|E Chain E, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|F Chain F, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|G Chain G, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|H Chain H, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|I Chain I, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|J Chain J, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|K Chain K, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|L Chain L, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6J|A Chain A, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|B Chain B, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|C Chain C, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|D Chain D, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|E Chain E, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|F Chain F, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|G Chain G, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|H Chain H, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|I Chain I, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|J Chain J, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|K Chain K, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|L Chain L, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|3IQE|A Chain A, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|B Chain B, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|C Chain C, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|D Chain D, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|E Chain E, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|F Chain F, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQF|A Chain A, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|B Chain B, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|C Chain C, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|D Chain D, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|E Chain E, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|F Chain F, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|G Chain G, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|H Chain H, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|I Chain I, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|J Chain J, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|K Chain K, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|L Chain L, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQZ|A Chain A, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|B Chain B, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|C Chain C, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|D Chain D, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|E Chain E, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|F Chain F, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
Length = 283
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 303 EKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTE 358
E+ + I S HE MR + D ELE +A + K+ S +++++D E
Sbjct: 228 ERYVPIVASAHEMMRKAAELADEARELEKSNDAVLRTPHAPDGKVLSKRKFMEDPE 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,794,656
Number of Sequences: 62578
Number of extensions: 386376
Number of successful extensions: 889
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 20
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)