Query 013541
Match_columns 441
No_of_seqs 257 out of 1642
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 7.3E-81 1.6E-85 621.1 39.2 360 40-441 55-414 (414)
2 COG0598 CorA Mg2+ and Co2+ tra 100.0 8.3E-34 1.8E-38 286.0 25.8 263 50-439 33-322 (322)
3 TIGR00383 corA magnesium Mg(2+ 100.0 8.4E-32 1.8E-36 270.3 30.1 281 45-439 22-318 (318)
4 PRK09546 zntB zinc transporter 100.0 5.7E-32 1.2E-36 272.8 28.2 271 48-439 35-324 (324)
5 PRK11085 magnesium/nickel/coba 100.0 4.2E-27 9.2E-32 235.8 28.1 278 49-439 25-316 (316)
6 PF01544 CorA: CorA-like Mg2+ 100.0 4.9E-26 1.1E-30 223.9 28.7 272 48-435 2-292 (292)
7 PRK11085 magnesium/nickel/coba 95.3 3.3 7.2E-05 42.1 20.4 98 338-438 214-312 (316)
8 PF01544 CorA: CorA-like Mg2+ 95.0 0.62 1.3E-05 45.5 14.2 46 344-389 198-244 (292)
9 PRK09546 zntB zinc transporter 95.0 1.9 4E-05 43.7 18.0 67 342-409 226-293 (324)
10 PF10267 Tmemb_cc2: Predicted 95.0 1.5 3.3E-05 45.8 17.2 31 376-411 345-375 (395)
11 COG0598 CorA Mg2+ and Co2+ tra 93.9 3.4 7.4E-05 41.9 17.0 76 347-424 236-314 (322)
12 TIGR00383 corA magnesium Mg(2+ 92.1 5.8 0.00012 39.8 15.4 68 341-409 219-287 (318)
13 PF03904 DUF334: Domain of unk 84.6 40 0.00087 32.6 17.9 30 364-393 139-168 (230)
14 PF07332 DUF1469: Protein of u 83.4 14 0.0003 31.6 10.1 56 345-401 7-62 (121)
15 PF02656 DUF202: Domain of unk 76.8 18 0.00039 28.1 7.8 15 424-438 59-73 (73)
16 PF10272 Tmpp129: Putative tra 76.6 4.6 9.9E-05 41.8 5.4 47 358-404 18-64 (358)
17 PRK15348 type III secretion sy 72.8 4.1 8.8E-05 40.1 3.8 43 394-436 200-248 (249)
18 PF07798 DUF1640: Protein of u 69.8 93 0.002 28.7 17.3 31 361-396 143-173 (177)
19 COG1459 PulF Type II secretory 69.4 40 0.00087 35.4 10.5 34 219-252 57-90 (397)
20 PF05478 Prominin: Prominin; 68.4 2.3E+02 0.0049 32.7 21.3 26 380-405 424-450 (806)
21 PF06127 DUF962: Protein of un 64.7 45 0.00097 27.7 7.9 36 356-394 3-38 (95)
22 PF11286 DUF3087: Protein of u 63.9 23 0.00049 32.7 6.4 51 381-439 26-76 (165)
23 COG5130 YIP3 Prenylated rab ac 63.5 33 0.00071 30.9 7.1 27 374-400 67-99 (169)
24 PF11026 DUF2721: Protein of u 63.2 1.1E+02 0.0023 27.0 11.1 70 330-399 13-92 (130)
25 PF07889 DUF1664: Protein of u 62.7 71 0.0015 28.2 9.1 65 178-246 38-115 (126)
26 COG1196 Smc Chromosome segrega 62.5 3.3E+02 0.0072 32.7 17.6 7 392-398 514-520 (1163)
27 KOG1666 V-SNARE [Intracellular 60.9 1.6E+02 0.0035 28.3 19.3 48 189-240 38-92 (220)
28 PF05360 YiaAB: yiaA/B two hel 60.6 17 0.00037 27.0 4.2 41 379-423 4-44 (53)
29 PF01102 Glycophorin_A: Glycop 60.3 19 0.00042 31.5 5.1 30 407-436 63-92 (122)
30 PF13273 DUF4064: Protein of u 60.1 15 0.00033 30.5 4.4 26 375-400 4-29 (100)
31 TIGR01167 LPXTG_anchor LPXTG-m 57.8 17 0.00036 23.9 3.4 9 429-437 25-33 (34)
32 PF04341 DUF485: Protein of un 57.4 93 0.002 25.5 8.6 63 366-436 11-77 (91)
33 TIGR02230 ATPase_gene1 F0F1-AT 55.8 42 0.00091 28.4 6.2 29 373-401 39-67 (100)
34 PF06210 DUF1003: Protein of u 54.7 32 0.00069 29.5 5.4 33 381-413 3-37 (108)
35 PF05377 FlaC_arch: Flagella a 54.6 47 0.001 25.0 5.6 39 208-247 3-41 (55)
36 PRK11644 sensory histidine kin 53.9 45 0.00097 35.8 7.8 55 378-441 112-167 (495)
37 PF05597 Phasin: Poly(hydroxya 53.2 1.6E+02 0.0034 26.2 9.7 68 180-247 58-129 (132)
38 PHA03231 glycoprotein BALF4; P 52.5 25 0.00054 40.2 5.7 22 191-212 435-456 (829)
39 PF04156 IncA: IncA protein; 52.2 21 0.00045 33.1 4.3 57 378-436 6-63 (191)
40 KOG3899 Uncharacterized conser 51.9 24 0.00052 35.4 4.8 78 358-439 34-123 (381)
41 PF02060 ISK_Channel: Slow vol 51.9 18 0.00038 31.9 3.4 49 389-437 14-70 (129)
42 PF11118 DUF2627: Protein of u 51.2 21 0.00046 28.6 3.5 47 391-437 14-67 (77)
43 PF09753 Use1: Membrane fusion 50.5 2.5E+02 0.0054 27.3 12.7 21 218-238 51-71 (251)
44 KOG3684 Ca2+-activated K+ chan 49.6 1.2E+02 0.0026 32.5 9.7 40 217-256 386-425 (489)
45 PF10577 UPF0560: Uncharacteri 49.2 16 0.00036 41.2 3.6 32 408-439 271-303 (807)
46 PTZ00370 STEVOR; Provisional 48.2 50 0.0011 33.1 6.4 15 238-252 110-124 (296)
47 PF10754 DUF2569: Protein of u 47.8 46 0.00099 29.9 5.7 13 428-440 73-85 (149)
48 PF11669 WBP-1: WW domain-bind 46.8 19 0.0004 30.5 2.8 11 409-419 22-32 (102)
49 PF10856 DUF2678: Protein of u 46.2 19 0.00042 31.2 2.8 52 378-436 33-85 (118)
50 PF12761 End3: Actin cytoskele 46.1 2.7E+02 0.0058 26.5 11.3 23 223-245 99-121 (195)
51 COG5487 Small integral membran 45.9 92 0.002 23.1 5.8 18 382-399 4-21 (54)
52 PTZ00382 Variant-specific surf 44.8 5.1 0.00011 33.6 -0.9 9 429-437 87-95 (96)
53 PF13140 DUF3980: Domain of un 44.7 64 0.0014 25.8 5.2 54 379-432 14-74 (87)
54 KOG3208 SNARE protein GS28 [In 44.6 3E+02 0.0066 26.7 18.1 49 334-382 142-196 (231)
55 PF01618 MotA_ExbB: MotA/TolQ/ 44.4 2.2E+02 0.0047 24.9 10.4 7 429-435 119-125 (139)
56 PF02439 Adeno_E3_CR2: Adenovi 44.2 46 0.00099 23.2 3.8 23 415-437 10-32 (38)
57 PF14235 DUF4337: Domain of un 43.5 2.6E+02 0.0056 25.5 11.4 36 327-362 69-104 (157)
58 PF14654 Epiglycanin_C: Mucin, 43.3 38 0.00083 28.5 4.0 29 407-435 16-44 (106)
59 TIGR02132 phaR_Bmeg polyhydrox 42.8 1.6E+02 0.0035 27.6 8.3 57 187-248 79-135 (189)
60 TIGR03647 Na_symport_sm probab 42.3 90 0.0019 25.1 5.9 31 402-435 35-65 (77)
61 PRK02935 hypothetical protein; 41.8 2.2E+02 0.0047 24.4 8.3 6 429-434 55-60 (110)
62 PF10224 DUF2205: Predicted co 41.5 1E+02 0.0022 25.1 6.1 42 218-260 21-62 (80)
63 PF11137 DUF2909: Protein of u 40.9 1.2E+02 0.0026 23.5 6.1 59 377-439 2-60 (63)
64 PF05478 Prominin: Prominin; 40.1 6.4E+02 0.014 29.1 21.4 11 325-335 321-331 (806)
65 PF10003 DUF2244: Integral mem 39.3 94 0.002 27.6 6.3 28 410-437 34-61 (140)
66 PF06570 DUF1129: Protein of u 39.1 96 0.0021 29.2 6.7 36 385-422 89-124 (206)
67 PF10112 Halogen_Hydrol: 5-bro 38.9 63 0.0014 30.2 5.4 21 379-399 10-30 (199)
68 PF13042 DUF3902: Protein of u 38.9 72 0.0016 29.0 5.3 65 371-436 61-125 (161)
69 PF13829 DUF4191: Domain of un 38.5 86 0.0019 30.4 6.2 24 408-435 51-74 (224)
70 KOG2662 Magnesium transporters 38.2 3E+02 0.0065 29.1 10.4 87 334-424 300-394 (414)
71 KOG3850 Predicted membrane pro 37.9 5.1E+02 0.011 27.3 19.8 27 377-408 395-421 (455)
72 PRK10881 putative hydrogenase 37.6 1.3E+02 0.0029 31.3 8.1 32 379-415 25-59 (394)
73 PF05461 ApoL: Apolipoprotein 37.3 2.7E+02 0.0058 28.4 9.9 33 327-359 58-90 (313)
74 PF06570 DUF1129: Protein of u 37.3 93 0.002 29.4 6.3 8 429-436 193-200 (206)
75 PF13937 DUF4212: Domain of un 37.1 1.2E+02 0.0026 24.6 6.0 23 402-424 39-61 (81)
76 PRK13182 racA polar chromosome 36.2 2.2E+02 0.0047 26.5 8.3 29 218-246 116-144 (175)
77 PF11368 DUF3169: Protein of u 35.4 1.1E+02 0.0023 29.8 6.6 6 370-375 6-11 (248)
78 PF12263 DUF3611: Protein of u 35.4 1.1E+02 0.0025 28.6 6.4 56 375-437 24-81 (183)
79 KOG3433 Protein involved in me 35.0 3.3E+02 0.0072 25.7 9.1 80 173-253 68-149 (203)
80 PF10805 DUF2730: Protein of u 34.5 2.4E+02 0.0051 23.9 7.7 39 208-246 52-91 (106)
81 PF07787 DUF1625: Protein of u 33.9 1.1E+02 0.0025 29.6 6.5 39 369-407 178-217 (248)
82 PF04799 Fzo_mitofusin: fzo-li 33.8 3.1E+02 0.0068 25.5 8.8 25 222-246 139-163 (171)
83 PF08173 YbgT_YccB: Membrane b 33.3 78 0.0017 20.6 3.4 19 410-428 3-21 (28)
84 PF11023 DUF2614: Protein of u 32.8 2.8E+02 0.006 24.1 7.7 6 429-434 54-59 (114)
85 PF11970 Git3_C: G protein-cou 32.8 1E+02 0.0022 24.6 4.9 67 369-438 4-74 (76)
86 COG3462 Predicted membrane pro 32.8 2.9E+02 0.0063 23.8 7.7 15 409-423 47-61 (117)
87 PF06609 TRI12: Fungal trichot 32.7 49 0.0011 36.8 4.0 50 366-420 159-208 (599)
88 TIGR02796 tolQ TolQ protein. T 31.8 2.4E+02 0.0052 26.9 8.2 30 369-398 115-144 (215)
89 PRK02870 heat shock protein Ht 31.7 1.8E+02 0.0039 29.9 7.7 29 369-397 19-47 (336)
90 PRK15122 magnesium-transportin 31.5 58 0.0013 37.9 4.6 9 431-439 894-903 (903)
91 TIGR02120 GspF general secreti 30.4 3.6E+02 0.0079 27.8 10.0 10 133-142 23-32 (399)
92 PRK00247 putative inner membra 30.2 1.5E+02 0.0033 31.5 7.0 19 379-397 226-245 (429)
93 PF04226 Transgly_assoc: Trans 30.1 1.1E+02 0.0023 22.2 4.2 11 388-398 10-20 (48)
94 PF06196 DUF997: Protein of un 30.0 3E+02 0.0065 22.2 8.0 26 378-403 8-33 (80)
95 PF14163 SieB: Superinfection 29.8 1.4E+02 0.003 26.6 5.9 43 376-423 4-46 (151)
96 KOG1853 LIS1-interacting prote 29.8 5.7E+02 0.012 25.4 16.0 74 180-253 45-124 (333)
97 PF01031 Dynamin_M: Dynamin ce 29.4 4.2E+02 0.0092 26.1 9.9 79 169-249 185-268 (295)
98 TIGR01010 BexC_CtrB_KpsE polys 29.3 6.2E+02 0.013 25.7 16.9 25 186-210 169-193 (362)
99 PF04971 Lysis_S: Lysis protei 28.8 54 0.0012 25.8 2.5 54 379-437 5-59 (68)
100 KOG3691 Exocyst complex subuni 28.6 1E+03 0.022 27.9 16.3 34 219-252 95-128 (982)
101 PF09788 Tmemb_55A: Transmembr 28.5 37 0.00079 33.4 1.9 28 407-434 225-252 (256)
102 PRK10189 MATE family multidrug 28.5 1.5E+02 0.0033 31.6 6.8 15 426-440 452-466 (478)
103 PRK14749 hypothetical protein; 28.0 1.5E+02 0.0032 19.6 3.9 23 409-431 2-24 (30)
104 PRK14584 hmsS hemin storage sy 27.7 1.6E+02 0.0034 27.0 5.7 24 375-398 17-40 (153)
105 PRK10517 magnesium-transportin 27.7 2E+02 0.0042 33.7 8.0 65 369-438 834-901 (902)
106 TIGR01834 PHA_synth_III_E poly 27.7 3.8E+02 0.0082 27.5 9.0 30 219-248 288-317 (320)
107 KOG2678 Predicted membrane pro 27.3 79 0.0017 30.6 3.9 25 410-434 214-238 (244)
108 TIGR02106 cyd_oper_ybgT cyd op 27.3 1.1E+02 0.0025 20.2 3.4 16 410-425 3-18 (30)
109 PF05915 DUF872: Eukaryotic pr 27.2 3.5E+02 0.0077 23.3 7.6 9 379-387 50-58 (115)
110 KOG4343 bZIP transcription fac 27.1 1.1E+02 0.0025 33.2 5.4 78 322-404 300-382 (655)
111 TIGR01478 STEVOR variant surfa 27.0 75 0.0016 31.9 3.8 14 239-252 112-125 (295)
112 PF13127 DUF3955: Protein of u 26.4 2.3E+02 0.005 21.8 5.7 16 393-408 21-37 (63)
113 PF09990 DUF2231: Predicted me 26.2 2.3E+02 0.005 23.4 6.3 24 378-401 7-30 (104)
114 PF07332 DUF1469: Protein of u 26.0 2.6E+02 0.0056 23.6 6.7 18 378-395 46-63 (121)
115 PF08580 KAR9: Yeast cortical 26.0 1E+03 0.022 27.1 15.2 128 185-379 6-146 (683)
116 PF05591 DUF770: Protein of un 25.7 1.1E+02 0.0024 28.0 4.4 39 218-256 110-151 (157)
117 PF04995 CcmD: Heme exporter p 25.7 1E+02 0.0022 22.0 3.4 11 428-438 22-32 (46)
118 TIGR03141 cytochro_ccmD heme e 25.6 88 0.0019 22.3 3.0 6 408-413 3-8 (45)
119 PF15003 HAUS2: HAUS augmin-li 25.4 5.9E+02 0.013 25.5 9.6 25 192-216 131-155 (277)
120 PF12325 TMF_TATA_bd: TATA ele 25.4 4.5E+02 0.0099 22.9 9.2 38 220-257 68-112 (120)
121 PF11857 DUF3377: Domain of un 25.4 42 0.00092 26.8 1.4 23 415-437 36-58 (74)
122 TIGR00353 nrfE c-type cytochro 25.2 1.4E+02 0.003 33.1 5.9 23 379-401 219-241 (576)
123 PF04012 PspA_IM30: PspA/IM30 25.1 5.8E+02 0.013 24.0 16.1 41 222-262 53-94 (221)
124 TIGR03358 VI_chp_5 type VI sec 24.7 1.3E+02 0.0027 27.7 4.6 38 218-255 111-151 (159)
125 PF11177 DUF2964: Protein of u 24.6 2.9E+02 0.0063 21.4 5.8 26 377-402 8-33 (62)
126 PF05393 Hum_adeno_E3A: Human 24.4 99 0.0022 25.6 3.4 12 412-423 37-48 (94)
127 PF06645 SPC12: Microsomal sig 24.3 1E+02 0.0022 24.6 3.5 52 377-436 11-62 (76)
128 PF12669 P12: Virus attachment 23.7 74 0.0016 24.1 2.5 11 426-436 14-24 (58)
129 PRK03072 heat shock protein Ht 23.7 5.3E+02 0.011 25.7 9.3 26 358-383 128-153 (288)
130 PF11821 DUF3341: Protein of u 23.5 2.8E+02 0.0061 25.7 6.7 28 396-423 79-107 (173)
131 PF06103 DUF948: Bacterial pro 23.4 3.9E+02 0.0085 21.4 9.1 19 179-197 11-29 (90)
132 PF14283 DUF4366: Domain of un 23.2 22 0.00047 34.3 -0.7 32 402-437 153-184 (218)
133 cd03569 VHS_Hrs_Vps27p VHS dom 22.7 3.1E+02 0.0068 24.3 6.7 25 173-197 57-81 (142)
134 PF11945 WASH_WAHD: WAHD domai 22.6 3.9E+02 0.0084 27.1 8.0 36 218-253 41-76 (297)
135 COG0534 NorM Na+-driven multid 22.5 2.3E+02 0.0049 30.1 6.8 50 379-439 395-446 (455)
136 PF14316 DUF4381: Domain of un 22.3 1.3E+02 0.0028 26.7 4.2 9 409-417 21-29 (146)
137 PF04048 Sec8_exocyst: Sec8 ex 21.9 5.6E+02 0.012 22.6 8.7 11 249-259 105-115 (142)
138 PF06770 Arif-1: Actin-rearran 21.7 1.6E+02 0.0036 27.9 4.8 20 379-398 40-59 (196)
139 KOG2861 Uncharacterized conser 21.5 3.8E+02 0.0082 28.3 7.9 54 342-398 337-390 (399)
140 KOG3176 Predicted alpha-helica 21.4 7.5E+02 0.016 23.9 9.6 75 169-251 40-114 (223)
141 PRK07668 hypothetical protein; 21.4 8E+02 0.017 24.2 10.1 25 326-350 24-48 (254)
142 smart00288 VHS Domain present 21.3 4.1E+02 0.0089 23.1 7.1 25 173-197 53-77 (133)
143 PRK10369 heme lyase subunit Nr 21.2 1.9E+02 0.0042 31.9 6.0 29 379-407 273-302 (571)
144 PF11712 Vma12: Endoplasmic re 21.0 5.8E+02 0.013 22.5 11.4 10 390-399 92-101 (142)
145 PF10805 DUF2730: Protein of u 21.0 4.6E+02 0.01 22.1 7.1 53 192-249 47-101 (106)
146 PHA00645 hypothetical protein 21.0 1.8E+02 0.0039 24.8 4.4 37 382-419 17-53 (125)
147 PRK11403 hypothetical protein; 21.0 2.3E+02 0.0051 24.5 5.1 43 376-422 4-46 (113)
148 PRK10573 type IV pilin biogene 20.9 9.3E+02 0.02 24.8 12.1 10 133-142 29-38 (399)
149 COG4241 Predicted membrane pro 20.8 4.4E+02 0.0096 26.8 7.8 46 372-417 169-221 (314)
150 PF10191 COG7: Golgi complex c 20.7 1.3E+03 0.028 26.5 12.6 31 218-248 68-98 (766)
151 PF00335 Tetraspannin: Tetrasp 20.6 33 0.00072 31.0 0.0 19 379-397 9-27 (221)
152 PF05377 FlaC_arch: Flagella a 20.5 1.9E+02 0.0042 21.8 4.0 33 224-256 11-43 (55)
153 PF14800 DUF4481: Domain of un 20.5 2.7E+02 0.0058 28.2 6.3 9 389-397 75-83 (308)
154 PF04102 SlyX: SlyX; InterPro 20.3 4E+02 0.0086 20.6 6.1 24 223-246 28-51 (69)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-81 Score=621.05 Aligned_cols=360 Identities=60% Similarity=0.861 Sum_probs=316.8
Q ss_pred ccceecCCCcceEEEEecCCCeeEEEechhhhhhhcCCCchhhhccCCCCCCCceEeecCCeeEeeccceeeeEecCeEE
Q 013541 40 LGLKKRGQGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVL 119 (441)
Q Consensus 40 ~~~~~~~~~~~~W~~id~~g~~~~~e~~k~~l~~~~gL~~RDLr~ld~~~~~ps~Il~R~~aIlvnle~i~aII~~d~vL 119 (441)
.+.++++.++++|++||..|+++..+++|+.|+++.||+|||||.+||+++||++|++||+|||+|+||||||||+|+|+
T Consensus 55 ~~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVl 134 (414)
T KOG2662|consen 55 SVSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVL 134 (414)
T ss_pred ccccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhhee
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCchhhhHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 013541 120 LLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAEL 199 (441)
Q Consensus 120 lf~~~~~~~~~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~L~~~~~~L 199 (441)
+|++.++ +.++.+++++|+.........|-. +.. ..++.+||||||||+||+++|+.|++++.+|
T Consensus 135 l~d~~~~-v~~~~~el~~~l~~~~~~~~~q~s------------~~~--~~~~~lPFEFrALE~aLe~~~s~L~~~~~~L 199 (414)
T KOG2662|consen 135 LLDSLDP-VIPYNEELQRRLPVELESRGNQLS------------SDG--GSKDELPFEFRALEVALEAACSFLDSRLSEL 199 (414)
T ss_pred Eeccccc-cchHHHHHHHHhcccccccccccC------------CCC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 889999999999766432211111 111 1157899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhhhhhhhcccccCcccccccc
Q 013541 200 EIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYR 279 (441)
Q Consensus 200 e~~~~~~Ld~L~~~i~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~m~Lt~k~~~~~~s~~~~~~~~~~~ 279 (441)
|..++|+||+|+.++++.+|++|+.+|++|++|.++|++|||+|++|||||+||++||||+|..+.+
T Consensus 200 e~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~------------- 266 (414)
T KOG2662|consen 200 ETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQAS------------- 266 (414)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhcc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999986532
Q ss_pred CCCccccCCCCCCCCCCCCchhhhhhhhhhhhccccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013541 280 SNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTED 359 (441)
Q Consensus 280 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~rd~~d~~~~~~~~~~~~eelE~LLE~Y~~~id~~~~~~~~l~~~i~~~e~ 359 (441)
.+.+.|.+|+......+. +-+. ..+.. +..+++||+|||||+||+|+|+++++++++++|+++|||
T Consensus 267 ----~~~~~~~sp~~~~~~~r~-~~~~-----~~s~~----~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd 332 (414)
T KOG2662|consen 267 ----SPESAPTSPTIKAGISRA-KSNR-----ASSTV----RGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTED 332 (414)
T ss_pred ----ccccCCCCccccCCccch-hhcc-----cchhc----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 133445554433322220 0000 00001 226789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q 013541 360 FINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRRLM 439 (441)
Q Consensus 360 ~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk~wl 439 (441)
+|+|+||++||++|+++++||+.|++++.+++|+|+||||++.++++.+|+|+|+++++++.|+++|++.++|+|+||++
T Consensus 333 ~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~~l~~~~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL~ 412 (414)
T KOG2662|consen 333 IINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPSSLEEDHYAFKWVVGITFTLCIVLFVVILGYAKLKRLL 412 (414)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 013541 440 PL 441 (441)
Q Consensus 440 ~~ 441 (441)
++
T Consensus 413 ~~ 414 (414)
T KOG2662|consen 413 GL 414 (414)
T ss_pred CC
Confidence 64
No 2
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-34 Score=285.98 Aligned_cols=263 Identities=18% Similarity=0.300 Sum_probs=201.5
Q ss_pred ceEEEEecCCCeeEEEechhhhhhhcCCCchhhhc-cCCCCCCCceEeecCCee--E-----------e-eccceeeeEe
Q 013541 50 RSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRL-LDPLFVYPSTILGREKAI--V-----------V-NLEQIRCIIT 114 (441)
Q Consensus 50 ~~W~~id~~g~~~~~e~~k~~l~~~~gL~~RDLr~-ld~~~~~ps~Il~R~~aI--l-----------v-nle~i~aII~ 114 (441)
..|+.++..++.+. ..|.+.+|||+..+++ +|.. ..+++...++.. + . ..++++.|++
T Consensus 33 ~~Widl~~p~~~e~-----~~l~~~~~l~~~~~ed~~~~~--~r~r~e~~d~~~~i~~~~~~~~~~~~~~~~~~v~~i~~ 105 (322)
T COG0598 33 FVWIDLVEPDDEEL-----EWLAKTFGLHPLALEDLLDAE--QRPKVERYDDYLFIVLRDVNLEEEEDKAETEPVSIIVG 105 (322)
T ss_pred eEEEECCCCCHHHH-----HHHHHhcCCCcchHHHHhCcc--cCCceEeeCCEEEEEEEeeccccccccccceeEEEEEe
Confidence 66999998777664 3888999999999998 5543 223444444321 1 1 3788999999
Q ss_pred cCeEEEeecCCchhhhHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 013541 115 ADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDS 194 (441)
Q Consensus 115 ~d~vLlf~~~~~~~~~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~L~~ 194 (441)
.+.+++++..+. +.++.++.|+..... ...+++++-|. .++.
T Consensus 106 ~~~liT~r~~~~---~~~~~vr~r~~~~~~----------------------~~~~~~~l~~~-------------lld~ 147 (322)
T COG0598 106 KRRLITIRHRPL---PAFDRVRERLEKGTL----------------------LTRGADELLYA-------------LLDA 147 (322)
T ss_pred CCEEEEEecCCC---ccHHHHHHHHhcccc----------------------ccCCHHHHHHH-------------HHHH
Confidence 999999998543 567889888876311 12334444444 4444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhhhhh
Q 013541 195 QAAELEIEAYPLLDELTSKIST-----------LNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKS 263 (441)
Q Consensus 195 ~~~~Le~~~~~~Ld~L~~~i~~-----------~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~m~Lt~k~~ 263 (441)
.++ .+.++|++++++++. ..+++|..+++.+..+++.+.+.++++..+...+.+.. +
T Consensus 148 i~d----~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~----~---- 215 (322)
T COG0598 148 IVD----NYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWL----S---- 215 (322)
T ss_pred HHH----hhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccC----C----
Confidence 444 455555544443322 36899999999999999999999999999998775421 0
Q ss_pred hhcccccCccccccccCCCccccCCCCCCCCCCCCchhhhhhhhhhhhccccccCCCCCcccHHHHHHHHHHHHHHHHHH
Q 013541 264 RMEASFYGDQSVLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDST 343 (441)
Q Consensus 264 ~~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~rd~~d~~~~~~~~~~~~eelE~LLE~Y~~~id~~ 343 (441)
++...|++|+++ ++
T Consensus 216 ---------------------------------------~~~~~~l~dv~~---------------------------~~ 229 (322)
T COG0598 216 ---------------------------------------EEDREYLRDVLD---------------------------HL 229 (322)
T ss_pred ---------------------------------------HHHHHHHHHHHH---------------------------HH
Confidence 444556666654 45
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-CCCCCCCchhHHHHHHHHHHH
Q 013541 344 LNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFA-IPFFDEPAAFKWVLIITGVCG 422 (441)
Q Consensus 344 ~~~~~~l~~~i~~~e~~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifGMN~~-~p~~~~~~~f~~v~~~~~~~~ 422 (441)
.+..+.+..+.+.+..+.+.+++..+|++|++|++||++|++|+|+|+|||+|||||+ ||+.+|+||||+++++|+++|
T Consensus 230 ~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~ 309 (322)
T COG0598 230 TQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLA 309 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHH
Confidence 5666666778888888999999999999999999999999999999999999999999 999999999999999999888
Q ss_pred HHHHHHHHHHHHhcCcC
Q 013541 423 IIIFCAFVWFFKYRRLM 439 (441)
Q Consensus 423 ~~~~~~~~~~frrk~wl 439 (441)
++ ++||||||||+
T Consensus 310 ~~----~~~~frrk~Wl 322 (322)
T COG0598 310 LL----LYLYFRRKGWL 322 (322)
T ss_pred HH----HHHHHHhcCcC
Confidence 87 89999999997
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=100.00 E-value=8.4e-32 Score=270.28 Aligned_cols=281 Identities=18% Similarity=0.237 Sum_probs=198.3
Q ss_pred cCCCcceEEEEecCCCeeEEEechhhhhhhcCCCchhhhc-cCCCCCCCceEeecCCe-------------eEeecccee
Q 013541 45 RGQGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRL-LDPLFVYPSTILGREKA-------------IVVNLEQIR 110 (441)
Q Consensus 45 ~~~~~~~W~~id~~g~~~~~e~~k~~l~~~~gL~~RDLr~-ld~~~~~ps~Il~R~~a-------------Ilvnle~i~ 110 (441)
...++..|+.+.+..+.+.+ ..+++.+|+|+.++++ +|+. +.| ++...++. -.+..+++.
T Consensus 22 ~~~~~~~Widl~~p~~~e~~----~~l~~~~~l~~~~~ed~~~~~-~~~-k~e~~~~~~~i~~~~~~~~~~~~~~~~~l~ 95 (318)
T TIGR00383 22 QELNTVLWIDLIEPTDEETL----AKLGQFFAIHPLALEDILNSP-QRP-KVEEDEDHLFIISFFLNEDEDDTFETEQVS 95 (318)
T ss_pred CCCCceEEEEccCCCcHHHH----HHHHHHcCcCcchHHHhhCCC-CCC-cEEEECCEEEEEEEeeeccCCCcceeEEEE
Confidence 34567789998776666633 4899999999999997 5653 111 22222211 124567899
Q ss_pred eeEecCeEEEeecCCchhhhHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHH
Q 013541 111 CIITADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACT 190 (441)
Q Consensus 111 aII~~d~vLlf~~~~~~~~~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~ 190 (441)
++++.+.++++.+.+. +.++.+++++...... ...+ |. .+|-.+|+.++.
T Consensus 96 ~~l~~~~liTv~~~~~---~~~~~~~~~~~~~~~~---------------------~~~~----~~--~ll~~il~~ivd 145 (318)
T TIGR00383 96 FILGKNLLFTIHEREL---PAFDSIRERIRTSQKV---------------------FEKG----AD--YLLYDIFDAIID 145 (318)
T ss_pred EEEECCEEEEEEcCCC---CcHHHHHHHHHhCchh---------------------hhCC----HH--HHHHHHHHHHHh
Confidence 9999999999987643 4677777777543210 0011 22 245556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHHHhhhhhhhhhcccc
Q 013541 191 FLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDG-DMAEMYLTEKKSRMEASF 269 (441)
Q Consensus 191 ~L~~~~~~Le~~~~~~Ld~L~~~i~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~-dm~~m~Lt~k~~~~~~s~ 269 (441)
.+...++.++.+...+-+++.+.-....++++..+|+++..+++.+.+.+++++.+.+.+. ... +
T Consensus 146 ~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~----~---------- 211 (318)
T TIGR00383 146 SYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQ----T---------- 211 (318)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC----C----------
Confidence 6666666555554333333322223356899999999999999999999999999987542 110 0
Q ss_pred cCccccccccCCCccccCCCCCCCCCCCCchhhhhhhhhhhhccccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 270 YGDQSVLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTS 349 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~rd~~d~~~~~~~~~~~~eelE~LLE~Y~~~id~~~~~~~~ 349 (441)
++...+++|.++ ++.+..+.
T Consensus 212 ---------------------------------~~~~~~~~dv~~---------------------------~~~~l~~~ 231 (318)
T TIGR00383 212 ---------------------------------EEVREYLRDIYD---------------------------HILSLLEM 231 (318)
T ss_pred ---------------------------------HHHHHHHHHHHH---------------------------HHHHHHHH
Confidence 223344555443 33344445
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-CCCCCCCchhHHHHHHHHHHHHHHHHH
Q 013541 350 LKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFA-IPFFDEPAAFKWVLIITGVCGIIIFCA 428 (441)
Q Consensus 350 l~~~i~~~e~~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifGMN~~-~p~~~~~~~f~~v~~~~~~~~~~~~~~ 428 (441)
++.+.+.++.+++.+++...|++|++|++||++|++|+|+|||||+|||||+ ||+.+|+||||+++++|++++++
T Consensus 232 ~~~~~e~l~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~---- 307 (318)
T TIGR00383 232 IETYRELLSSLMDLYLSLVNNKMNEIMKILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALG---- 307 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHH----
Confidence 5566667777888888888888888888999999999999999999999999 99999999999999999988876
Q ss_pred HHHHHHhcCcC
Q 013541 429 FVWFFKYRRLM 439 (441)
Q Consensus 429 ~~~~frrk~wl 439 (441)
+++|||||||+
T Consensus 308 ~~~~fkrk~Wl 318 (318)
T TIGR00383 308 PLIYFRRKGWL 318 (318)
T ss_pred HHHHHHHcCCC
Confidence 89999999997
No 4
>PRK09546 zntB zinc transporter; Reviewed
Probab=100.00 E-value=5.7e-32 Score=272.79 Aligned_cols=271 Identities=14% Similarity=0.130 Sum_probs=187.2
Q ss_pred CcceEEEEecCCCeeEEEechhhhhhhcCCCchhhhc-cCCCCCCCceEeecCCeeE--------------eeccceeee
Q 013541 48 GLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRL-LDPLFVYPSTILGREKAIV--------------VNLEQIRCI 112 (441)
Q Consensus 48 ~~~~W~~id~~g~~~~~e~~k~~l~~~~gL~~RDLr~-ld~~~~~ps~Il~R~~aIl--------------vnle~i~aI 112 (441)
+...|+.++.....+ . ..|.+ ++.++..+++ +.... ..|++...++.+. ....++.++
T Consensus 35 ~~~~Wi~l~~~~~~e-~----~~L~~-~~~~~~~~~d~l~~~~-~rpk~e~~~~~~~iil~~~~~~~~~~~~~~~~l~~~ 107 (324)
T PRK09546 35 AHPCWLHLDYTHPDS-A----QWLAT-TPLLPDNVRDALAGES-TRPRVSRLGEGTLITLRCINGNTDERPDQLVAMRVY 107 (324)
T ss_pred CCCEEEEeCCCChhH-H----HHHHh-cCCCCHHHHHHHhCCC-CCCcEEEECCEEEEEEEeccCCCCCChhheEEEEEE
Confidence 456799997543332 2 35554 4677777775 54321 2234544443332 123458999
Q ss_pred EecCeEEEeecCCchhhhHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHHH
Q 013541 113 ITADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFL 192 (441)
Q Consensus 113 I~~d~vLlf~~~~~~~~~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~L 192 (441)
++.|+++++...+. ++++.+++++..... ..+ |.+ .+-.+|+.++..+
T Consensus 108 l~~~~lITv~~~~~---~~~~~~~~~~~~~~~-----------------------~~~----~~~--ll~~lld~ivd~~ 155 (324)
T PRK09546 108 ITDRLIVSTRHRKV---LALDDVVSDLQEGTG-----------------------PTD----CGG--WLVDVCDALTDHA 155 (324)
T ss_pred EeCCEEEEEecCCc---ccHHHHHHHHHhCCC-----------------------CCC----HHH--HHHHHHHHHHHHH
Confidence 99999999987643 478888888765321 011 222 3344555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh-h--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhhhhhhhcccc
Q 013541 193 DSQAAELEIEAYPLLDELTSKIS-T--LNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASF 269 (441)
Q Consensus 193 ~~~~~~Le~~~~~~Ld~L~~~i~-~--~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~m~Lt~k~~~~~~s~ 269 (441)
...++.+++. ++++++++- . ..+++|..+|+++..+++.+.|.++++.+|.+.+... ++
T Consensus 156 ~~~l~~i~~~----ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~----~~---------- 217 (324)
T PRK09546 156 SEFIEELHDK----IIDLEDNLLDQQIPPRGELALLRKQLIVMRRYMAPQRDVFARLASERLPW----MS---------- 217 (324)
T ss_pred HHHHHHHHHH----HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cC----------
Confidence 5555544434 344444331 1 2457999999999999999999999999998654221 01
Q ss_pred cCccccccccCCCccccCCCCCCCCCCCCchhhhhhhhhhhhccccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 270 YGDQSVLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTS 349 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~rd~~d~~~~~~~~~~~~eelE~LLE~Y~~~id~~~~~~~~ 349 (441)
++...|++|.+| ++.+.++.
T Consensus 218 ---------------------------------~~~~~~l~Dv~d---------------------------~~~~~~~~ 237 (324)
T PRK09546 218 ---------------------------------DDDRRRMQDIAD---------------------------RLGRGLDD 237 (324)
T ss_pred ---------------------------------hHHHHHHHHHHH---------------------------HHHHHHHH
Confidence 334456676655 33444455
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-CCCCCCCchhHHHHHHHHHHHHHHHHH
Q 013541 350 LKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFA-IPFFDEPAAFKWVLIITGVCGIIIFCA 428 (441)
Q Consensus 350 l~~~i~~~e~~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifGMN~~-~p~~~~~~~f~~v~~~~~~~~~~~~~~ 428 (441)
+..+++.+..+.+.+.+..+|++|+.|++||++|++|+|+|||||+|||||+ ||+.+|+||||+++++|++++++
T Consensus 238 l~~~~~~~~~l~d~~~s~~s~~~N~~m~~Ltilt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~---- 313 (324)
T PRK09546 238 LDACIARTAVLADEIASVMAEAMNRRTYTMSLMAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGG---- 313 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHH----
Confidence 5566677777778888888888888888899999999999999999999998 99999999999999999887776
Q ss_pred HHHHHHhcCcC
Q 013541 429 FVWFFKYRRLM 439 (441)
Q Consensus 429 ~~~~frrk~wl 439 (441)
++|||||||||
T Consensus 314 ~~~~fkrk~Wl 324 (324)
T PRK09546 314 VAWWLKRSKWL 324 (324)
T ss_pred HHHHHHhcccC
Confidence 89999999997
No 5
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=99.96 E-value=4.2e-27 Score=235.79 Aligned_cols=278 Identities=12% Similarity=0.150 Sum_probs=181.5
Q ss_pred cceEEEEecCCCeeEEEechhhhhhhcCCC---chhhhccCCC--C-CCCce------EeecCCeeEeeccceeeeEecC
Q 013541 49 LRSWIRVDVSGNSQIIEVDKFSMMRRCDLP---ARDLRLLDPL--F-VYPST------ILGREKAIVVNLEQIRCIITAD 116 (441)
Q Consensus 49 ~~~W~~id~~g~~~~~e~~k~~l~~~~gL~---~RDLr~ld~~--~-~~ps~------Il~R~~aIlvnle~i~aII~~d 116 (441)
..-|+.+..-...+ . ..+.+.+|++ ..|++.+..+ + .++.. .+.+...--...+.+.+|++.+
T Consensus 25 ~~vWiDl~~Pt~eE-~----~~v~~~~gl~~pt~~~~eeIe~ssR~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fil~~~ 99 (316)
T PRK11085 25 DAVWIDLVEPDDDE-R----LRVQSELGQSLATRPELEDIEASARFFEDEDGLHIHSFFFFEDAEDHAGNSTVAFTIRDG 99 (316)
T ss_pred CCEEEEcCCCCHHH-H----HHHHHHhCCCCCChhhHHHHhhCceEEEECCeEEEEEEEEecCCCCCccceeEEEEEECC
Confidence 56799986653333 2 4788899999 8888876654 1 11211 1122110012567889999999
Q ss_pred eEEEeecCCchhhhHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 013541 117 EVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQA 196 (441)
Q Consensus 117 ~vLlf~~~~~~~~~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~L~~~~ 196 (441)
.++++...+. +.|..+++|+..+.. ...++.++.+. .||++.+.....++..-
T Consensus 100 ~LvTvr~~~~---~~f~~~~~r~~~~~~----------------------~~~~~~~vl~~--Lld~iVd~~ad~lE~~~ 152 (316)
T PRK11085 100 RLFTLREREL---PAFRLYRMRARSQTL----------------------VDGNAYELLLD--LFETKIEQLADEIENIY 152 (316)
T ss_pred EEEEEecCCc---chHHHHHHHHHhCCc----------------------ccCCHHHHHHH--HHHHHHHHhHHHHHHHH
Confidence 9999998765 367888888854311 01123334444 47777777776666665
Q ss_pred HHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhhhhhhhcccccCcccc
Q 013541 197 AELEIEAYPLLDELT-SKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSV 275 (441)
Q Consensus 197 ~~Le~~~~~~Ld~L~-~~i~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~m~Lt~k~~~~~~s~~~~~~~ 275 (441)
.+++.-...+++.-. +.+ ...+++|.++++.+..++..+.++++++..+.... ...
T Consensus 153 ~~ld~ls~~if~~~~~~~~-~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~-~~~--------------------- 209 (316)
T PRK11085 153 SDLEKLSRVIMEGHQGDEY-DEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKA-RLP--------------------- 209 (316)
T ss_pred HHHHHHHHHhccCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCC---------------------
Confidence 554444444432100 011 12356677777777777777777777777666421 000
Q ss_pred ccccCCCccccCCCCCCCCCCCCchhhhhhhhhhhhccccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 276 LGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYID 355 (441)
Q Consensus 276 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~rd~~d~~~~~~~~~~~~eelE~LLE~Y~~~id~~~~~~~~l~~~i~ 355 (441)
. +..+ .+..++++++.+....+. +.+
T Consensus 210 ---------------------------~-----------------------~~~~-~~~~~~~Di~~l~~~~~~---~~~ 235 (316)
T PRK11085 210 ---------------------------G-----------------------GQLE-QAREILRDIESLLPHNES---LFQ 235 (316)
T ss_pred ---------------------------h-----------------------hHHH-HHHHHHHHHHHHHHHHHH---HHH
Confidence 0 0000 112334444444444444 444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 356 DTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFA-IPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFK 434 (441)
Q Consensus 356 ~~e~~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifGMN~~-~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~~fr 434 (441)
.+..+.+.+++...|++|++|++||++|++|+|+|+|||+|||||+ ||+.+|+||||+++++|++++++ ++||||
T Consensus 236 ~~~~l~d~~~~~i~~~~N~~mk~lTv~s~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~~~~~~~----~~~~f~ 311 (316)
T PRK11085 236 KVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIILMILAGLA----PYLYFK 311 (316)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHHHHHHHHH----HHHHHH
Confidence 5566677777777788888888899999999999999999999999 99999999999999999888876 899999
Q ss_pred hcCcC
Q 013541 435 YRRLM 439 (441)
Q Consensus 435 rk~wl 439 (441)
||||+
T Consensus 312 rk~Wl 316 (316)
T PRK11085 312 RKNWL 316 (316)
T ss_pred HcccC
Confidence 99997
No 6
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=99.95 E-value=4.9e-26 Score=223.95 Aligned_cols=272 Identities=21% Similarity=0.308 Sum_probs=180.5
Q ss_pred CcceEEEEecCCCeeEEEechhhhhhhcCCCchhhhc-cCCCCCCCceEeecCCeeEe--------------eccceeee
Q 013541 48 GLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRL-LDPLFVYPSTILGREKAIVV--------------NLEQIRCI 112 (441)
Q Consensus 48 ~~~~W~~id~~g~~~~~e~~k~~l~~~~gL~~RDLr~-ld~~~~~ps~Il~R~~aIlv--------------nle~i~aI 112 (441)
++..|+.+.+..+.+. ..|.+++|+|+..+++ +++. ..+++...++++.+ ...++.++
T Consensus 2 ~~~~Wi~~~~~~~~~~-----~~l~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 74 (292)
T PF01544_consen 2 DGFVWIDLSGPDDEEL-----EWLAEEFGLHPLTIEDALDPE--ERPRIEVFDDYLFIVLRAPEYEEEDDIDEESPLSFI 74 (292)
T ss_dssp SS-EEEEEETTTCHHH-----HHHHHTTTS-HHHHHHHCCTS--SSSEEEEETTEEEEEEEEEEESTTCCECCEEEEEEE
T ss_pred CccEEEEEeCCCHHHH-----HHHHHHhCcCHhHHHHHhCCC--cCCEEEEECCeEEEEEEEcchhhcccccccceEEEE
Confidence 4578999999887643 4899999999999996 6654 23345544443321 12267999
Q ss_pred EecCeEEEeecCCchhhhHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHHH
Q 013541 113 ITADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFL 192 (441)
Q Consensus 113 I~~d~vLlf~~~~~~~~~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~L 192 (441)
++.+.++++...+. ++++.+.+++.... ........++..++..++..+
T Consensus 75 ~~~~~lit~~~~~~---~~~~~~~~~~~~~~----------------------------~~~~~~~~ll~~il~~~~~~~ 123 (292)
T PF01544_consen 75 LGDNFLITVHRDPL---PFIDELRERLESRN----------------------------ERPSSPEDLLYAILDEIVDDY 123 (292)
T ss_dssp EETTEEEEEESSSS---HCHHHHHHHHHSTT----------------------------CSCSSHHHHHHHHHHHHHHHH
T ss_pred EecceEEEEECCCC---hHHHHHHHHhhccC----------------------------CCCCCHHHHHHHHHHHHHHHH
Confidence 99999999998753 56788888887111 012334457888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhHHHhhhhhhhhhcccccC
Q 013541 193 DSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMD-DDGDMAEMYLTEKKSRMEASFYG 271 (441)
Q Consensus 193 ~~~~~~Le~~~~~~Ld~L~~~i~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLd-dD~dm~~m~Lt~k~~~~~~s~~~ 271 (441)
...++.++.....+-+.+.+.-....+.++..+|+.+..+++.+.+.++++.+++. ++.... +
T Consensus 124 ~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~----~------------ 187 (292)
T PF01544_consen 124 FEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFI----S------------ 187 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTS----H------------
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhh----h------------
Confidence 88888666664433333333334456789999999999999999999999988877 221110 0
Q ss_pred ccccccccCCCccccCCCCCCCCCCCCchhhhhhhhhhhhccccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 272 DQSVLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLK 351 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~rd~~d~~~~~~~~~~~~eelE~LLE~Y~~~id~~~~~~~~l~ 351 (441)
++. ...++....++..+.+.++.++
T Consensus 188 -------------------------------~~~------------------------~~~~~~~~~~~~~~~~~~~~~~ 212 (292)
T PF01544_consen 188 -------------------------------DED------------------------KEYLRDLLDRIERLLERAESLR 212 (292)
T ss_dssp -------------------------------CHH------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------hhH------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1123333334445555555555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-CCCCCCCchhHHH--HHHHHHHHHHHHHH
Q 013541 352 EYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFA-IPFFDEPAAFKWV--LIITGVCGIIIFCA 428 (441)
Q Consensus 352 ~~i~~~e~~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifGMN~~-~p~~~~~~~f~~v--~~~~~~~~~~~~~~ 428 (441)
+..+.+. +.+.+...+++|+.|++||++|++|+|+|||||+|||||. ||+.+|+|||+++ +++|++++++
T Consensus 213 ~~~~~l~---~~~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~fGMN~~~~p~~~~~~g~~~~~~~~~~~~~~~~---- 285 (292)
T PF01544_consen 213 ERLESLQ---DLYQSKLSNRQNRVMKVLTIVTAIFLPLTFITGIFGMNFKGMPELDWPYGYFFVIILGLMILVAIL---- 285 (292)
T ss_dssp HHHHHHH---HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-SS---SSSSSS-SHHH--HHHHHHHHHH----
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCccCCccHHHHHHHHHHHHHHHHH----
Confidence 5555444 4455555555555556699999999999999999999999 9999999988777 5555554444
Q ss_pred HHHHHHh
Q 013541 429 FVWFFKY 435 (441)
Q Consensus 429 ~~~~frr 435 (441)
++|||||
T Consensus 286 ~~~~~kR 292 (292)
T PF01544_consen 286 LYWWFKR 292 (292)
T ss_dssp HHCCTTS
T ss_pred HHHheeC
Confidence 7888886
No 7
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=95.27 E-value=3.3 Score=42.08 Aligned_cols=98 Identities=12% Similarity=0.061 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCchhHHHHH
Q 013541 338 VVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQL-IQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLI 416 (441)
Q Consensus 338 ~~id~~~~~~~~l~~~i~~~e~~i~i~L~~~~N~l-~~~~l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~ 416 (441)
.++..+.+.++.+.++.+...+.++..++...+.+ ++.+.++-++|++-+++...+=+.|+ +.|.+..-|..-| -++
T Consensus 214 ~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~lTv~s~if~pptliagi-yGMNf~~mP~~~~-~~g 291 (316)
T PRK11085 214 EQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASS-YGMNFEFMPELKW-SFG 291 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-cccccCCCCCCCC-cHH
Confidence 45667778888888999888999888888888775 58889999999999999999999998 6788776664332 222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc
Q 013541 417 ITGVCGIIIFCAFVWFFKYRRL 438 (441)
Q Consensus 417 ~~~~~~~~~~~~~~~~frrk~w 438 (441)
..++++ ++.++.++.+..-||
T Consensus 292 ~~~~l~-~~~~~~~~~~~~f~r 312 (316)
T PRK11085 292 YPGAII-LMILAGLAPYLYFKR 312 (316)
T ss_pred HHHHHH-HHHHHHHHHHHHHHH
Confidence 222222 223346667666554
No 8
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=95.04 E-value=0.62 Score=45.53 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 013541 344 LNKLTSLKEYIDDTEDFINIQLDNVRNQL-IQFELLLTTATFVVAIF 389 (441)
Q Consensus 344 ~~~~~~l~~~i~~~e~~i~i~L~~~~N~l-~~~~l~LTi~t~i~~p~ 389 (441)
...++.+.+.++.+.+.++...+...|.+ ++.+..+..+|.+-+..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~if 244 (292)
T PF01544_consen 198 LDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMKVLTIVTAIF 244 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444333333 23444444444433333
No 9
>PRK09546 zntB zinc transporter; Reviewed
Probab=95.03 E-value=1.9 Score=43.71 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCc
Q 013541 342 STLNKLTSLKEYIDDTEDFINIQLDNVRNQL-IQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPA 409 (441)
Q Consensus 342 ~~~~~~~~l~~~i~~~e~~i~i~L~~~~N~l-~~~~l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~ 409 (441)
.+...+..+.+.++...+..+...+...+.+ ++++.++-++|++-+...-.+=+-|. +.|.+..-|.
T Consensus 226 Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~~m~~Ltilt~IflPlT~IaGi-yGMNf~~mPe 293 (324)
T PRK09546 226 DIADRLGRGLDDLDACIARTAVLADEIASVMAEAMNRRTYTMSLMAMVFLPTTFLTGL-FGVNLGGIPG 293 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccccCCCCC
Confidence 4555555555555555544445555444443 34445555566666555555666666 5566655554
No 10
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=94.97 E-value=1.5 Score=45.76 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCchh
Q 013541 376 ELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAF 411 (441)
Q Consensus 376 ~l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~~f 411 (441)
+++||++++++...+.++ ||.+|+..+++-.
T Consensus 345 nllL~l~~vlLv~vSt~~-----~~~~Pl~~tR~r~ 375 (395)
T PF10267_consen 345 NLLLTLLTVLLVFVSTVA-----NCPLPLTRTRLRT 375 (395)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCcHHhhccHHH
Confidence 556777777766665555 4679999988554
No 11
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=93.94 E-value=3.4 Score=41.88 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=46.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cc-ccCC-CCCCCCCchhHHHHHHHHHHHH
Q 013541 347 LTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGI-FG-MNFA-IPFFDEPAAFKWVLIITGVCGI 423 (441)
Q Consensus 347 ~~~l~~~i~~~e~~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaGi-fG-MN~~-~p~~~~~~~f~~v~~~~~~~~~ 423 (441)
++.+++.+..+.+.....+++++|++|++.-++|++-+..+..|-+.|. |+ |=.- .|. .-+.++.++++.+++..
T Consensus 236 ~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~--Gy~~~l~~m~~~~~~~~ 313 (322)
T COG0598 236 LEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPY--GYPIALILMLLLALLLY 313 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcc--cHHHHHHHHHHHHHHHH
Confidence 3344455555566667777888888888888888777777777777765 44 6432 444 33444555555555444
Q ss_pred H
Q 013541 424 I 424 (441)
Q Consensus 424 ~ 424 (441)
+
T Consensus 314 ~ 314 (322)
T COG0598 314 L 314 (322)
T ss_pred H
Confidence 4
No 12
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=92.11 E-value=5.8 Score=39.77 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCc
Q 013541 341 DSTLNKLTSLKEYIDDTEDFINIQLDNVRNQL-IQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPA 409 (441)
Q Consensus 341 d~~~~~~~~l~~~i~~~e~~i~i~L~~~~N~l-~~~~l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~ 409 (441)
..+...++.+.+.++...+.++..++...+.+ ++++..+-.+|++-++.+-.+=+-|. +.|.+..-|.
T Consensus 219 ~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~t~IaGi-yGMNf~~mP~ 287 (318)
T TIGR00383 219 RDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKILTVVSTIFIPLTFIAGI-YGMNFKFMPE 287 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCcccCcc
Confidence 45666666666666666666666666555444 46666666666666666666666666 5565554443
No 13
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=84.62 E-value=40 Score=32.61 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 364 QLDNVRNQLIQFELLLTTATFVVAIFGVVA 393 (441)
Q Consensus 364 ~L~~~~N~l~~~~l~LTi~t~i~~p~t~Ia 393 (441)
..+..+++...+..-++.+-++|+..++|.
T Consensus 139 ~~E~y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 139 SHEKYQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334455555555555777777776666655
No 14
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=83.43 E-value=14 Score=31.59 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 013541 345 NKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFA 401 (441)
Q Consensus 345 ~~~~~l~~~i~~~e~~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifGMN~~ 401 (441)
+..+.+.++.++--++....+..+..++... ..+.+++.++...+++...++..+-
T Consensus 7 ~l~~~~~~lv~~~i~La~~E~~~~~~~~~~~-~~~~~~a~vl~~~~l~~l~~al~~~ 62 (121)
T PF07332_consen 7 DLVDDLSTLVRTRIELAKAELREKARRLGRG-LALLVLAAVLALLALLFLLVALVFA 62 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666665543 4445555555555555555555544
No 15
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=76.76 E-value=18 Score=28.14 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhcCc
Q 013541 424 IIFCAFVWFFKYRRL 438 (441)
Q Consensus 424 ~~~~~~~~~frrk~w 438 (441)
+++.+.+-|++++||
T Consensus 59 ~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 59 TLIYGIYRYRRRRRW 73 (73)
T ss_pred HHHHHHHHHHHHHhC
Confidence 444556788899888
No 16
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=76.62 E-value=4.6 Score=41.75 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 013541 358 EDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPF 404 (441)
Q Consensus 358 e~~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifGMN~~~p~ 404 (441)
+++....|.+......+--+.-|++++.+-+.-..+=+.||++-++.
T Consensus 18 ~~lfs~~LgsE~~~FV~YHikRT~~tllvHs~LPlgY~~~~~~~~~~ 64 (358)
T PF10272_consen 18 QNLFSSWLGSEDYDFVQYHIKRTSATLLVHSCLPLGYFIGMCFFAPE 64 (358)
T ss_pred HHHHHHhhCccccchHHHHHhHhHHHHHHHHHHHHHHHhheeEeecc
Confidence 56667777777766666667777777777766666667888875443
No 17
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=72.77 E-value=4.1 Score=40.07 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=23.7
Q ss_pred hhccccCCCCCCC----C--CchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013541 394 GIFGMNFAIPFFD----E--PAAFKWVLIITGVCGIIIFCAFVWFFKYR 436 (441)
Q Consensus 394 GifGMN~~~p~~~----~--~~~f~~v~~~~~~~~~~~~~~~~~~frrk 436 (441)
.|||||+..+..+ | .|+||.++++++++-+++.++.++|.+||
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (249)
T PRK15348 200 TFWIMDVINANKGKVVKWLMKYPYQLMLSLTGLLLGVGILIGYFCLRRR 248 (249)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4899999844433 2 24666666666544333334444444444
No 18
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=69.78 E-value=93 Score=28.70 Aligned_cols=31 Identities=6% Similarity=0.329 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013541 361 INIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIF 396 (441)
Q Consensus 361 i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaGif 396 (441)
+...+.+.++.+++. +++++++.++++.|+|
T Consensus 143 lr~~iE~~K~~~lr~-----~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 143 LRTEIESLKWDTLRW-----LVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 344445566666665 2344455555555554
No 19
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.39 E-value=40 Score=35.42 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Q 013541 219 LERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGD 252 (441)
Q Consensus 219 Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~d 252 (441)
-+++-.+.++|..+-+.=-|+.++++-+.+..+.
T Consensus 57 ~~~l~~f~~qLa~Ll~aG~pL~~aL~~l~~q~~~ 90 (397)
T COG1459 57 KKDLALFTRQLATLLKAGLPLYEALEILADQAPN 90 (397)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhCCC
Confidence 3455666666777777767777777766665544
No 20
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=68.43 E-value=2.3e+02 Score=32.67 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhccccCC-CCCC
Q 013541 380 TTATFVVAIFGVVAGIFGMNFA-IPFF 405 (441)
Q Consensus 380 Ti~t~i~~p~t~IaGifGMN~~-~p~~ 405 (441)
-++-+++...+++.|++|-.=. .|..
T Consensus 424 llLIv~~~~lGLl~G~~G~~~~~~p~~ 450 (806)
T PF05478_consen 424 LLLIVLCLLLGLLCGCCGYRRRADPTD 450 (806)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCCcc
Confidence 3334455668889999996544 5543
No 21
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=64.67 E-value=45 Score=27.67 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013541 356 DTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAG 394 (441)
Q Consensus 356 ~~e~~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaG 394 (441)
+.++....|.+..+|..|+. +=++.+-.+..+++..
T Consensus 3 ~~~~~~~~Y~~~H~~~~n~~---lH~igvp~~~~~~~~~ 38 (95)
T PF06127_consen 3 SLEEFFAFYLSYHRNPINRA---LHFIGVPLIIFSLLLL 38 (95)
T ss_pred CHHHHHHHHHHHcCCHhhHH---HHHHHHHHHHHHHHHH
Confidence 45778888999999999987 4444444444444333
No 22
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=63.90 E-value=23 Score=32.67 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q 013541 381 TATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRRLM 439 (441)
Q Consensus 381 i~t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk~wl 439 (441)
.+...++.++....+|| .++..-|+|=+++.++ ++++.++.+..+|.+-|+
T Consensus 26 lai~sl~~s~llI~lFg-------~~~~~nf~~NllGVil-~~~~~~~~l~~~k~~p~m 76 (165)
T PF11286_consen 26 LAILSLAFSQLLIALFG-------GESGGNFHWNLLGVIL-GLLLTSALLRQLKTHPFM 76 (165)
T ss_pred HHHHHHHHHHHHHHHcC-------CCCCCceeeeHHHHHH-HHHHHHHHHHHHccChHH
Confidence 33444455677888999 1222233332222222 222333356688888775
No 23
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=63.51 E-value=33 Score=30.89 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=18.4
Q ss_pred HHHHHHHHHH------HHHHHHHHHHhhccccC
Q 013541 374 QFELLLTTAT------FVVAIFGVVAGIFGMNF 400 (441)
Q Consensus 374 ~~~l~LTi~t------~i~~p~t~IaGifGMN~ 400 (441)
.+.-+||+.+ +++.++..++|+||.|=
T Consensus 67 aiia~l~iy~ll~nllLlivIgivvaGvygi~k 99 (169)
T COG5130 67 AIIAILTIYYLLYNLLLLIVIGIVVAGVYGIRK 99 (169)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhheeeehhh
Confidence 3333455554 45677888999999984
No 24
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=63.20 E-value=1.1e+02 Score=26.95 Aligned_cols=70 Identities=13% Similarity=0.273 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcccc
Q 013541 330 EMLLEAYFVVIDSTLNKLTSLKEYIDDTE--D----FINIQLDNVRNQLIQFELLLTTATFVVAIFG----VVAGIFGMN 399 (441)
Q Consensus 330 E~LLE~Y~~~id~~~~~~~~l~~~i~~~e--~----~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t----~IaGifGMN 399 (441)
-.++-.|-.+...+.+++..+.+..+... + .-++..=.+|-++++-...+.+++.++...+ |+.+++++|
T Consensus 13 g~ll~~~tnRl~ri~dR~R~L~~~~~~~~~~~~~~~~~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~ 92 (130)
T PF11026_consen 13 GLLLLVLTNRLARIVDRIRQLHDELRDAPDEEERRLRRELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSID 92 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34566666666677767666666554321 1 2344444566666776666776666655544 444555555
No 25
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.65 E-value=71 Score=28.16 Aligned_cols=65 Identities=15% Similarity=0.245 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 178 FRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTL-------------NLERVRRLKSRLVALTRRVQKVRDEIE 244 (441)
Q Consensus 178 ~raLE~~L~~~~~~L~~~~~~Le~~~~~~Ld~L~~~i~~~-------------~Le~l~~lK~~L~~l~~~v~~vre~l~ 244 (441)
-|-|.-+...+...|+..-+ ....+=+.|+.+|+.. .-+.+-.++..+..+...+..++.++.
T Consensus 38 rr~m~~A~~~v~kql~~vs~----~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~ 113 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSE----SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVE 113 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444444444444444444 4333344444444332 123344445555555555555555554
Q ss_pred HH
Q 013541 245 QL 246 (441)
Q Consensus 245 ~L 246 (441)
.|
T Consensus 114 ~L 115 (126)
T PF07889_consen 114 GL 115 (126)
T ss_pred HH
Confidence 44
No 26
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=62.54 E-value=3.3e+02 Score=32.74 Aligned_cols=7 Identities=29% Similarity=1.004 Sum_probs=4.7
Q ss_pred HHhhccc
Q 013541 392 VAGIFGM 398 (441)
Q Consensus 392 IaGifGM 398 (441)
+.|+||-
T Consensus 514 ~~Gv~G~ 520 (1163)
T COG1196 514 LPGVYGP 520 (1163)
T ss_pred CCCccch
Confidence 6677773
No 27
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.89 E-value=1.6e+02 Score=28.33 Aligned_cols=48 Identities=29% Similarity=0.429 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHHHHHHHHHHH
Q 013541 189 CTFLDSQAAELEIEAYPLLDELTSKIST-------LNLERVRRLKSRLVALTRRVQKVR 240 (441)
Q Consensus 189 ~~~L~~~~~~Le~~~~~~Ld~L~~~i~~-------~~Le~l~~lK~~L~~l~~~v~~vr 240 (441)
|+.++...+ ++..+|++++-.+.. .-+.+|+..|+.|..|++-++...
T Consensus 38 l~~i~~~le----Ea~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~ 92 (220)
T KOG1666|consen 38 LSEIDSKLE----EANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTT 92 (220)
T ss_pred HHHHHHhHH----HHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555 666667766554432 346889999999999998887765
No 28
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=60.56 E-value=17 Score=26.96 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHHHHHH
Q 013541 379 LTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGI 423 (441)
Q Consensus 379 LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~~~~ 423 (441)
.+-++++++...+..|+| |. |..-|..||+.+..++++.+.
T Consensus 4 ~~~~~f~i~~~~~~iGl~--~~--~~~l~~KGy~~~~~l~~l~s~ 44 (53)
T PF05360_consen 4 QSWISFGISIVLMLIGLW--NA--PLDLSEKGYYAMGLLFLLFSA 44 (53)
T ss_pred HHHHHHHHHHHHHHHHHH--hC--CCCHHHHHHHHHHHHHHHHHH
Confidence 567788888889999999 53 344577899987776655544
No 29
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=60.31 E-value=19 Score=31.52 Aligned_cols=30 Identities=20% Similarity=0.115 Sum_probs=14.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013541 407 EPAAFKWVLIITGVCGIIIFCAFVWFFKYR 436 (441)
Q Consensus 407 ~~~~f~~v~~~~~~~~~~~~~~~~~~frrk 436 (441)
.+.-.++++++|+.+.++++++.|+..|++
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566677766655444433333333333
No 30
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=60.12 E-value=15 Score=30.45 Aligned_cols=26 Identities=19% Similarity=0.032 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccC
Q 013541 375 FELLLTTATFVVAIFGVVAGIFGMNF 400 (441)
Q Consensus 375 ~~l~LTi~t~i~~p~t~IaGifGMN~ 400 (441)
.+++|++++.++.....+.+++...+
T Consensus 4 ~E~iL~~Ig~il~il~~~~~l~~~~~ 29 (100)
T PF13273_consen 4 AEKILGWIGGILGILFGFFGLLIGFF 29 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888776655444444433
No 31
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=57.79 E-value=17 Score=23.86 Aligned_cols=9 Identities=11% Similarity=0.058 Sum_probs=4.5
Q ss_pred HHHHHHhcC
Q 013541 429 FVWFFKYRR 437 (441)
Q Consensus 429 ~~~~frrk~ 437 (441)
.+++.|||+
T Consensus 25 ~~~~~~rk~ 33 (34)
T TIGR01167 25 GLLLRKRKK 33 (34)
T ss_pred HHHheeccc
Confidence 455555553
No 32
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=57.37 E-value=93 Score=25.52 Aligned_cols=63 Identities=13% Similarity=-0.055 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccCCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013541 366 DNVRNQLIQFELLLTTATFVVAIFGVVAGIFG---MNFAIP-FFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYR 436 (441)
Q Consensus 366 ~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifG---MN~~~p-~~~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk 436 (441)
-..|+++.-. ++++.+++-.+-.+..-|- |+-+.. + ..++|+++.++..+++.+ ..++|.++-
T Consensus 11 ~r~r~r~~~~---l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G-~~t~g~~~g~~~~~~~~~----l~~~Yv~~A 77 (91)
T PF04341_consen 11 VRRRRRLAWP---LSAIFLVLYFGFVLLSAFAPELMATPVFPG-SLTLGIVLGLGQIVFAWV----LTWLYVRRA 77 (91)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHCHHHHcCcccCC-CcCHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3455555544 5554444443333333333 444433 3 566677655554433333 256666654
No 33
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=55.78 E-value=42 Score=28.41 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 013541 373 IQFELLLTTATFVVAIFGVVAGIFGMNFA 401 (441)
Q Consensus 373 ~~~~l~LTi~t~i~~p~t~IaGifGMN~~ 401 (441)
.+-.-+++++...++.+++++.+.|.=++
T Consensus 39 ~~~l~~~g~IG~~~v~pil~G~~lG~WLD 67 (100)
T TIGR02230 39 WEGLGMFGLIGWSVAIPTLLGVAVGIWLD 67 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334588999999999999999999765
No 34
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.70 E-value=32 Score=29.49 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCC--CCCchhHH
Q 013541 381 TATFVVAIFGVVAGIFGMNFAIPFF--DEPAAFKW 413 (441)
Q Consensus 381 i~t~i~~p~t~IaGifGMN~~~p~~--~~~~~f~~ 413 (441)
.++++++-..+++++.+.|.-.+.. -.||.|.+
T Consensus 3 S~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFil 37 (108)
T PF06210_consen 3 SWTFIIIFTVFLAVWILLNILAPPRPAFDPYPFIL 37 (108)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccCCCCCccHHH
Confidence 4677888899999999999874432 24555543
No 35
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=54.58 E-value=47 Score=25.02 Aligned_cols=39 Identities=18% Similarity=0.469 Sum_probs=19.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 208 DELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLM 247 (441)
Q Consensus 208 d~L~~~i~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LL 247 (441)
++|+.++....-. +-.+|++...++..+..+.+-+.+++
T Consensus 3 ~elEn~~~~~~~~-i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 3 DELENELPRIESS-INTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544433221 44555566666665555555555444
No 36
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=53.91 E-value=45 Score=35.84 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH-HHHhcCcCCC
Q 013541 378 LLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVW-FFKYRRLMPL 441 (441)
Q Consensus 378 ~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~-~frrk~wl~~ 441 (441)
+++++++.....++..|.|+-. +..++...+++.+.+.-++..+| |.++++|++|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~g~~~~~p~~~l~~~~~~~~~~~~l 167 (495)
T PRK11644 112 QGAALTAAALLQSLPWLWHGKE---------GWNALLLTLTGGLTLAPTCLLFWHYLAQNTWLPL 167 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---------hHHHHHHHHhchHHHHHHHHHHHHHHhhcccccC
Confidence 3555555555555666666542 34666666666666666665665 8899999876
No 37
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=53.15 E-value=1.6e+02 Score=26.21 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 013541 180 ALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRL----KSRLVALTRRVQKVRDEIEQLM 247 (441)
Q Consensus 180 aLE~~L~~~~~~L~~~~~~Le~~~~~~Ld~L~~~i~~~~Le~l~~l----K~~L~~l~~~v~~vre~l~~LL 247 (441)
.+|..+..+...+...++.+-..+....+.++..++...-.-|.+| |+.+..|+.+|..+...+++|-
T Consensus 58 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 58 KAEEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555566666666777777777766655433333333 7777777777777777777664
No 38
>PHA03231 glycoprotein BALF4; Provisional
Probab=52.49 E-value=25 Score=40.22 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 013541 191 FLDSQAAELEIEAYPLLDELTS 212 (441)
Q Consensus 191 ~L~~~~~~Le~~~~~~Ld~L~~ 212 (441)
.|+--.|.|...+-.+|.+|.+
T Consensus 435 QLQFaYD~Lr~~IN~~L~~ia~ 456 (829)
T PHA03231 435 QLQFAYDHLRDHINDMLGRLAE 456 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777654
No 39
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=52.17 E-value=21 Score=33.06 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCchhHHHHHH-HHHHHHHHHHHHHHHHHhc
Q 013541 378 LLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLII-TGVCGIIIFCAFVWFFKYR 436 (441)
Q Consensus 378 ~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~-~~~~~~~~~~~~~~~frrk 436 (441)
+++++..+++..-+++|+-|-=+..+.. ...|...+++ +++++++++++.+.++-++
T Consensus 6 i~~i~~iilgilli~~gI~~Lv~~~~~l--~~~~s~~lg~~~lAlg~vL~~~g~~~~~~~ 63 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAALVLFISGL--GALISFILGIALLALGVVLLSLGLLCLLSK 63 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3555555555555555555532222211 1233333333 2333555555566555544
No 40
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.94 E-value=24 Score=35.39 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccCCCCCCC---------CCchhHHHHHHHHHHHHHH
Q 013541 358 EDFINIQLDNVRNQLIQFELLLTTAT---FVVAIFGVVAGIFGMNFAIPFFD---------EPAAFKWVLIITGVCGIII 425 (441)
Q Consensus 358 e~~i~i~L~~~~N~l~~~~l~LTi~t---~i~~p~t~IaGifGMN~~~p~~~---------~~~~f~~v~~~~~~~~~~~ 425 (441)
++++.+.|.+..-.....-..=|.++ -.|.| .+-+-|||+.+.... .|+.++.++. ..+++.+.
T Consensus 34 ~~Lft~~lgse~~dFV~yh~RRta~~l~~hS~lP---~~Yfv~~~L~~S~~~t~~~~Av~~~p~~W~t~l~-~av~a~~~ 109 (381)
T KOG3899|consen 34 FDLFTILLGSEQHDFVEYHARRTAFFLAFHSFLP---AAYFVHGNLLMSAADTRRFPAVLDYPWMWFTVLF-VAVIANGY 109 (381)
T ss_pred HHHHHHHhCcchhhhhHHHHHHHHHHHHHHHhcc---HHHHHhhhhhhhhhhhhcchhhhcChHHHHHHHH-HHHHhcch
Confidence 44555555554444444444334433 34455 455669999865543 3444433333 33445566
Q ss_pred HHHHHHHHHhcCcC
Q 013541 426 FCAFVWFFKYRRLM 439 (441)
Q Consensus 426 ~~~~~~~frrk~wl 439 (441)
+++++.+..++||-
T Consensus 110 ~cilI~~whq~~W~ 123 (381)
T KOG3899|consen 110 YCILIKDWHQKKWP 123 (381)
T ss_pred heeeehhhhhhcCC
Confidence 77788899899994
No 41
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=51.92 E-value=18 Score=31.86 Aligned_cols=49 Identities=10% Similarity=0.297 Sum_probs=31.6
Q ss_pred HHHHHhhccccCC-CCC-----C--CCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013541 389 FGVVAGIFGMNFA-IPF-----F--DEPAAFKWVLIITGVCGIIIFCAFVWFFKYRR 437 (441)
Q Consensus 389 ~t~IaGifGMN~~-~p~-----~--~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk~ 437 (441)
..++=+...+|=. .|. . +..+.|++++++|+..+++++.+|+-|.|-||
T Consensus 14 ~~l~q~~~~~~~nsS~la~~~~~s~~~~~~~lYIL~vmgfFgff~~gImlsyvRSKK 70 (129)
T PF02060_consen 14 SKLWQETVQQSSNSSPLASRSPSSSDDDNEYLYILVVMGFFGFFTVGIMLSYVRSKK 70 (129)
T ss_dssp HHHHHHHHHT--TTSSGGGS-S--TT-SSTT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcccccCCCCCCCCceeehHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666533 332 1 23456888888888888888889999999876
No 42
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=51.20 E-value=21 Score=28.64 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=22.5
Q ss_pred HHHhhccccCC----CCCCCCCchhHHH---HHHHHHHHHHHHHHHHHHHHhcC
Q 013541 391 VVAGIFGMNFA----IPFFDEPAAFKWV---LIITGVCGIIIFCAFVWFFKYRR 437 (441)
Q Consensus 391 ~IaGifGMN~~----~p~~~~~~~f~~v---~~~~~~~~~~~~~~~~~~frrk~ 437 (441)
.+.+.||.-+- ......|+.++|. .++...+..+.|++-++++|-||
T Consensus 14 g~~a~yGiklMRD~~F~~~~~p~~~lwlqfl~G~~lf~~G~~Fi~GfI~~RDRK 67 (77)
T PF11118_consen 14 GILAAYGIKLMRDTVFGILFSPFPSLWLQFLAGLLLFAIGVGFIAGFILHRDRK 67 (77)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhHhheeecc
Confidence 34555665431 2233345555553 22333333445666677776554
No 43
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=50.53 E-value=2.5e+02 Score=27.32 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 013541 218 NLERVRRLKSRLVALTRRVQK 238 (441)
Q Consensus 218 ~Le~l~~lK~~L~~l~~~v~~ 238 (441)
.-+.|..+.+++..|+..+..
T Consensus 51 s~e~l~eY~~ri~~Lk~l~~~ 71 (251)
T PF09753_consen 51 SKEVLNEYSERIDFLKGLIEA 71 (251)
T ss_pred CHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666555543
No 44
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=49.64 E-value=1.2e+02 Score=32.48 Aligned_cols=40 Identities=13% Similarity=0.314 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHH
Q 013541 217 LNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEM 256 (441)
Q Consensus 217 ~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~m 256 (441)
.+-.++|...++...--...++||-...++.|+.+++.+|
T Consensus 386 ~~~~rlR~hQRkfL~AI~~fR~Vk~~qRkl~e~~nsl~d~ 425 (489)
T KOG3684|consen 386 GDQARLRKHQRKFLQAIHQFRSVKWEQRKLSEQANSLVDL 425 (489)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 3567788887777666666777888888888877766544
No 45
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=49.21 E-value=16 Score=41.24 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=23.9
Q ss_pred CchhH-HHHHHHHHHHHHHHHHHHHHHHhcCcC
Q 013541 408 PAAFK-WVLIITGVCGIIIFCAFVWFFKYRRLM 439 (441)
Q Consensus 408 ~~~f~-~v~~~~~~~~~~~~~~~~~~frrk~wl 439 (441)
+..|. .++++++++.+++++++++|||||.|-
T Consensus 271 HT~fLl~ILG~~~livl~lL~vLl~yCrrkc~~ 303 (807)
T PF10577_consen 271 HTVFLLAILGGTALIVLILLCVLLCYCRRKCLK 303 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 33553 356667778888889999999999774
No 46
>PTZ00370 STEVOR; Provisional
Probab=48.21 E-value=50 Score=33.15 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCch
Q 013541 238 KVRDEIEQLMDDDGD 252 (441)
Q Consensus 238 ~vre~l~~LLddD~d 252 (441)
.+-+-++++..|+.+
T Consensus 110 el~e~~ee~fg~~~~ 124 (296)
T PTZ00370 110 ELLETYEEMFGDESD 124 (296)
T ss_pred HHHHHHHHHhcCccc
Confidence 456678888888888
No 47
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=47.83 E-value=46 Score=29.87 Aligned_cols=13 Identities=38% Similarity=0.738 Sum_probs=8.3
Q ss_pred HHHHHHHhcCcCC
Q 013541 428 AFVWFFKYRRLMP 440 (441)
Q Consensus 428 ~~~~~frrk~wl~ 440 (441)
..+.|||||+-++
T Consensus 73 ~~~lffkr~~~~P 85 (149)
T PF10754_consen 73 LLYLFFKRKRRFP 85 (149)
T ss_pred HHHHHHHccchhH
Confidence 3456788877553
No 48
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=46.77 E-value=19 Score=30.53 Aligned_cols=11 Identities=18% Similarity=0.018 Sum_probs=4.9
Q ss_pred chhHHHHHHHH
Q 013541 409 AAFKWVLIITG 419 (441)
Q Consensus 409 ~~f~~v~~~~~ 419 (441)
|.||.++++++
T Consensus 22 w~FWlv~~lii 32 (102)
T PF11669_consen 22 WYFWLVWVLII 32 (102)
T ss_pred HHHHHHHHHHH
Confidence 34554444433
No 49
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=46.19 E-value=19 Score=31.19 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhhccccCC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013541 378 LLTTATFVVAIFGVVAGIFGMNFA-IPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYR 436 (441)
Q Consensus 378 ~LTi~t~i~~p~t~IaGifGMN~~-~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk 436 (441)
++.++|.++...|+|.|++ |. .|. +--+-|+.+.++.+.++.+ .+++|+|+-
T Consensus 33 iiG~vT~l~VLvtii~afv---f~~~~p-~p~~iffavcI~l~~~s~~---lLI~WYR~g 85 (118)
T PF10856_consen 33 IIGAVTSLFVLVTIISAFV---FPQDPP-KPLHIFFAVCILLICISAI---LLIFWYRQG 85 (118)
T ss_pred ehHHHHHHHHHHHHhheEE---ecCCCC-CceEEehHHHHHHHHHHHH---hheeehhcC
Confidence 4778888888888887765 33 221 1123444444444433333 255555543
No 50
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=46.15 E-value=2.7e+02 Score=26.47 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013541 223 RRLKSRLVALTRRVQKVRDEIEQ 245 (441)
Q Consensus 223 ~~lK~~L~~l~~~v~~vre~l~~ 245 (441)
-+||++|..|...+..+..+.+.
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666655555555543
No 51
>COG5487 Small integral membrane protein [Function unknown]
Probab=45.88 E-value=92 Score=23.09 Aligned_cols=18 Identities=17% Similarity=0.543 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhcccc
Q 013541 382 ATFVVAIFGVVAGIFGMN 399 (441)
Q Consensus 382 ~t~i~~p~t~IaGifGMN 399 (441)
++.+|...++|+|.+|.-
T Consensus 4 waliFlvialIa~~lGFg 21 (54)
T COG5487 4 WALIFLVIALIAGALGFG 21 (54)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 578899999999999863
No 52
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=44.79 E-value=5.1 Score=33.55 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=4.6
Q ss_pred HHHHHHhcC
Q 013541 429 FVWFFKYRR 437 (441)
Q Consensus 429 ~~~~frrk~ 437 (441)
.|||++|||
T Consensus 87 ~w~f~~r~k 95 (96)
T PTZ00382 87 CWWFVCRGK 95 (96)
T ss_pred hheeEEeec
Confidence 455555554
No 53
>PF13140 DUF3980: Domain of unknown function (DUF3980)
Probab=44.70 E-value=64 Score=25.77 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhccccCC-CCCCCC------CchhHHHHHHHHHHHHHHHHHHHHH
Q 013541 379 LTTATFVVAIFGVVAGIFGMNFA-IPFFDE------PAAFKWVLIITGVCGIIIFCAFVWF 432 (441)
Q Consensus 379 LTi~t~i~~p~t~IaGifGMN~~-~p~~~~------~~~f~~v~~~~~~~~~~~~~~~~~~ 432 (441)
|-+++++....+.+++++--.+- .|+.+. ..+--++..+.+.-++++|++.|.|
T Consensus 14 lkimsviyli~sil~afs~~sli~~~gf~~is~s~sg~a~g~~~lgsifqsvlvf~giwvf 74 (87)
T PF13140_consen 14 LKIMSVIYLIVSILMAFSAGSLIHNPGFGEISISGSGGAIGIIILGSIFQSVLVFCGIWVF 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCCeeEeecCCceeeeeehHHHHHHHHHHHHHHHH
Confidence 66667777777777777765554 444331 1122223333444456666665554
No 54
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.59 E-value=3e+02 Score=26.65 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH---H---HHHHHHHHHHHHHHHHHHHHH
Q 013541 334 EAYFVVIDSTLNKLTSLKEYIDDTEDF---I---NIQLDNVRNQLIQFELLLTTA 382 (441)
Q Consensus 334 E~Y~~~id~~~~~~~~l~~~i~~~e~~---i---~i~L~~~~N~l~~~~l~LTi~ 382 (441)
|.|.++-+++-+....+.+.+....+. + ...+....|+++.+-..+-.+
T Consensus 142 e~~lkE~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~I 196 (231)
T KOG3208|consen 142 EMYLKEHDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAI 196 (231)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchH
Confidence 344444444444444444444333222 2 334556666666654444333
No 55
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=44.43 E-value=2.2e+02 Score=24.93 Aligned_cols=7 Identities=29% Similarity=0.515 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 013541 429 FVWFFKY 435 (441)
Q Consensus 429 ~~~~frr 435 (441)
++.++++
T Consensus 119 ~~~~l~~ 125 (139)
T PF01618_consen 119 FYNYLKR 125 (139)
T ss_pred HHHHHHH
Confidence 3444443
No 56
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=44.17 E-value=46 Score=23.16 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 013541 415 LIITGVCGIIIFCAFVWFFKYRR 437 (441)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~frrk~ 437 (441)
.++.+.+++++++.+++.+.+||
T Consensus 10 v~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 10 VAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444444455555666677766
No 57
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=43.49 E-value=2.6e+02 Score=25.51 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013541 327 EELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFIN 362 (441)
Q Consensus 327 eelE~LLE~Y~~~id~~~~~~~~l~~~i~~~e~~i~ 362 (441)
+.++.-.+.|-.+.+.+....+.+....+..+...+
T Consensus 69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d 104 (157)
T PF14235_consen 69 AAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESD 104 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445556667777777777776666666555554433
No 58
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=43.28 E-value=38 Score=28.48 Aligned_cols=29 Identities=10% Similarity=0.275 Sum_probs=21.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 013541 407 EPAAFKWVLIITGVCGIIIFCAFVWFFKY 435 (441)
Q Consensus 407 ~~~~f~~v~~~~~~~~~~~~~~~~~~frr 435 (441)
.||..+.+....+++++.+|++++++.|+
T Consensus 16 ~PWeIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 16 KPWEIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46666777777777888888888888755
No 59
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=42.76 E-value=1.6e+02 Score=27.57 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 013541 187 AACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMD 248 (441)
Q Consensus 187 ~~~~~L~~~~~~Le~~~~~~Ld~L~~~i~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLd 248 (441)
+.+..|+..++.||.-+....|.++. .++.-..+|++++.++.++..+-+-+.++|.
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~~-----q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~ 135 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELEA-----QQEQAPALKKDVTKLKQDIKSLDKKLDKILE 135 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhCchHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666555544444444432 2445556777777777777777766666654
No 60
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=42.32 E-value=90 Score=25.13 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=19.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 013541 402 IPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKY 435 (441)
Q Consensus 402 ~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~~frr 435 (441)
......|.+||..--++.++-+++ .++|.++
T Consensus 35 ~~~~GfPlgfw~aaQGsi~~fviL---i~~Ya~~ 65 (77)
T TIGR03647 35 FTFFGFPLGFWFAQQGSIYVFVVL---IFVYAWR 65 (77)
T ss_pred CeeCCCChHHHHHHhhHHHHHHHH---HHHHHHH
Confidence 346679999998776665544442 4455444
No 61
>PRK02935 hypothetical protein; Provisional
Probab=41.84 E-value=2.2e+02 Score=24.42 Aligned_cols=6 Identities=33% Similarity=0.401 Sum_probs=2.9
Q ss_pred HHHHHH
Q 013541 429 FVWFFK 434 (441)
Q Consensus 429 ~~~~fr 434 (441)
..+|||
T Consensus 55 ~vvYFw 60 (110)
T PRK02935 55 TVVYFW 60 (110)
T ss_pred HHHHHH
Confidence 445554
No 62
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=41.49 E-value=1e+02 Score=25.06 Aligned_cols=42 Identities=26% Similarity=0.533 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhh
Q 013541 218 NLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTE 260 (441)
Q Consensus 218 ~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~m~Lt~ 260 (441)
-+.++..++..|..|..+|..|+++-+.| +.+.++...|+..
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL-~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKL-ESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 35678889999999999999999999887 4567777888875
No 63
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=40.86 E-value=1.2e+02 Score=23.50 Aligned_cols=59 Identities=7% Similarity=-0.021 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q 013541 377 LLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRRLM 439 (441)
Q Consensus 377 l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk~wl 439 (441)
+.+-++.++++..++-.|.|-|-=+ ...+.+...+..+=+...+.+. +.+.+..+-+|+
T Consensus 2 Ki~iv~lll~ii~sL~saL~~l~kd-~~~~~rm~~~L~~RV~lS~~l~---~lil~~~~~G~i 60 (63)
T PF11137_consen 2 KILIVLLLLAIIASLFSALFFLVKD-KGSSKRMVKALGRRVGLSALLF---LLILIALYTGWI 60 (63)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhC-CCCCchHHHHHHHHHHHHHHHH---HHHHHHHHhCCC
Confidence 3467788899999999999999543 3344444444433333332222 245555566776
No 64
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=40.09 E-value=6.4e+02 Score=29.07 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=5.2
Q ss_pred cHHHHHHHHHH
Q 013541 325 SVEELEMLLEA 335 (441)
Q Consensus 325 ~~eelE~LLE~ 335 (441)
.++.++.++++
T Consensus 321 ~l~~l~~v~~~ 331 (806)
T PF05478_consen 321 QLNNLEEVIKT 331 (806)
T ss_pred HHHHHHHHHhc
Confidence 34555554443
No 65
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=39.26 E-value=94 Score=27.57 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013541 410 AFKWVLIITGVCGIIIFCAFVWFFKYRR 437 (441)
Q Consensus 410 ~f~~v~~~~~~~~~~~~~~~~~~frrk~ 437 (441)
|.|.++.++++-.++++.++++++|+.+
T Consensus 34 GaW~Vl~F~glev~~l~~a~~~~~r~~~ 61 (140)
T PF10003_consen 34 GAWPVLPFAGLEVLALWYAFRRNYRHAR 61 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 5577777766655566666777776543
No 66
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=39.09 E-value=96 Score=29.25 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHHHHH
Q 013541 385 VVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCG 422 (441)
Q Consensus 385 i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~~~ 422 (441)
.++..+++.|+.++ -.|.....+|+..++++.++++
T Consensus 89 ~~~if~~~~gi~~~--f~~~~~~~~gi~tli~~~i~~G 124 (206)
T PF06570_consen 89 FFGIFSLLFGIMGF--FSPKNSNQYGIITLILVSIVGG 124 (206)
T ss_pred HHHHHHHHHHHHHH--HhhcccccccHHHHHHHHHHHH
Confidence 34444444444432 1333333346554444443333
No 67
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=38.95 E-value=63 Score=30.23 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 013541 379 LTTATFVVAIFGVVAGIFGMN 399 (441)
Q Consensus 379 LTi~t~i~~p~t~IaGifGMN 399 (441)
-+++++.++..++++++||.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (199)
T PF10112_consen 10 RWILGVLIAAITFLVSFFGFD 30 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 346666777777788888776
No 68
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=38.93 E-value=72 Score=28.97 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013541 371 QLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYR 436 (441)
Q Consensus 371 ~l~~~~l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk 436 (441)
+..++-+.-+++|+.++...++.|++=+++. |+.-+-..|||+..+..-+..++..+.+.+-++|
T Consensus 61 ~~~k~l~kt~~iSF~~avLGiifgI~~qll~-~WslsiM~wYWll~LlLyl~tiisLViLVf~n~k 125 (161)
T PF13042_consen 61 KFSKVLIKTNVISFNFAVLGIIFGIIHQLLG-KWSLSIMMWYWLLILLLYLITIISLVILVFVNRK 125 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3444445588999999999999999988753 2222333455554433322222223344554444
No 69
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=38.45 E-value=86 Score=30.39 Aligned_cols=24 Identities=4% Similarity=-0.202 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 013541 408 PAAFKWVLIITGVCGIIIFCAFVWFFKY 435 (441)
Q Consensus 408 ~~~f~~v~~~~~~~~~~~~~~~~~~frr 435 (441)
++.||.++++++.+.+. |+++-||
T Consensus 51 ~~~~~~i~gi~~g~l~a----m~vl~rr 74 (224)
T PF13829_consen 51 SWWYWLIIGILLGLLAA----MIVLSRR 74 (224)
T ss_pred cHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 35666666666544333 5655554
No 70
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=38.16 E-value=3e+02 Score=29.06 Aligned_cols=87 Identities=10% Similarity=0.171 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---CCCCCCC
Q 013541 334 EAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNV----RNQLIQFELLLTTATFVVAIFGVVAGIFGMN---FAIPFFD 406 (441)
Q Consensus 334 E~Y~~~id~~~~~~~~l~~~i~~~e~~i~i~L~~~----~N~l~~~~l~LTi~t~i~~p~t~IaGifGMN---~~~p~~~ 406 (441)
|.-.+-++.....++.+....+.+.++|+-.=|.. .|+-|+ |--+-+.+..+||..++|++= |.|....
T Consensus 300 eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~----LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~ 375 (414)
T KOG2662|consen 300 EELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNE----LIQLELLLTIGTFCLSVFSVVAGIFGMNLPS 375 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 34557777888888888888888888886655543 366666 455677788899999999883 3355543
Q ss_pred -CCchhHHHHHHHHHHHHH
Q 013541 407 -EPAAFKWVLIITGVCGII 424 (441)
Q Consensus 407 -~~~~f~~v~~~~~~~~~~ 424 (441)
+...-|.++.++++.+++
T Consensus 376 ~l~~~~~~F~~vv~~~~~~ 394 (414)
T KOG2662|consen 376 SLEEDHYAFKWVVGITFTL 394 (414)
T ss_pred hhccCCChhhhhHHHHHHH
Confidence 444556666665544443
No 71
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=37.92 E-value=5.1e+02 Score=27.29 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 013541 377 LLLTTATFVVAIFGVVAGIFGMNFAIPFFDEP 408 (441)
Q Consensus 377 l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~ 408 (441)
.+|.++++++...+-|+ |+..|+..+.
T Consensus 395 iiLalm~VlLvfVSTIa-----~~v~PLmkSR 421 (455)
T KOG3850|consen 395 IILALMTVLLVFVSTIA-----NCVSPLMKSR 421 (455)
T ss_pred HHHHHHHHHHHHHHHHH-----hhccHHhhhh
Confidence 34555555444444443 6667776655
No 72
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=37.61 E-value=1.3e+02 Score=31.29 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhh---ccccCCCCCCCCCchhHHHH
Q 013541 379 LTTATFVVAIFGVVAGI---FGMNFAIPFFDEPAAFKWVL 415 (441)
Q Consensus 379 LTi~t~i~~p~t~IaGi---fGMN~~~p~~~~~~~f~~v~ 415 (441)
+.++.+....--++.|+ .|||=+ .+||+|++.
T Consensus 25 l~~~g~~~~~~~~~~Glg~vtg~~~~-----~~WGl~I~~ 59 (394)
T PRK10881 25 LIVICMLLIVKRFVFGLGSVSNLNGG-----YPWGIWIAF 59 (394)
T ss_pred HHHHHHHHHHHHHHhcchhhcCCCCC-----CCchHHHHH
Confidence 44444444555566664 777743 446766553
No 73
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=37.30 E-value=2.7e+02 Score=28.37 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013541 327 EELEMLLEAYFVVIDSTLNKLTSLKEYIDDTED 359 (441)
Q Consensus 327 eelE~LLE~Y~~~id~~~~~~~~l~~~i~~~e~ 359 (441)
++-+..|+.|-+.-..+.+.+..|++..|..+.
T Consensus 58 ~~~~~FL~~Fp~~k~~Le~~I~kL~~lAd~idk 90 (313)
T PF05461_consen 58 QDRERFLKEFPQLKEELEEHIRKLRALADEIDK 90 (313)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666555555555555554444443
No 74
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.25 E-value=93 Score=29.36 Aligned_cols=8 Identities=13% Similarity=0.604 Sum_probs=5.5
Q ss_pred HHHHHHhc
Q 013541 429 FVWFFKYR 436 (441)
Q Consensus 429 ~~~~frrk 436 (441)
..+|+|||
T Consensus 193 ~~~~lkkk 200 (206)
T PF06570_consen 193 LRFYLKKK 200 (206)
T ss_pred HHHHHHHH
Confidence 56777776
No 75
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=37.09 E-value=1.2e+02 Score=24.62 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=15.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHH
Q 013541 402 IPFFDEPAAFKWVLIITGVCGII 424 (441)
Q Consensus 402 ~p~~~~~~~f~~v~~~~~~~~~~ 424 (441)
+.....|.|||..--+++++-++
T Consensus 39 ~~~~GfPlgfw~aaQGsi~~fvi 61 (81)
T PF13937_consen 39 ITFGGFPLGFWFAAQGSIIVFVI 61 (81)
T ss_pred CeeCCCChHHHHHHHhHHHHHHH
Confidence 33566899999877666554443
No 76
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=36.24 E-value=2.2e+02 Score=26.53 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 218 NLERVRRLKSRLVALTRRVQKVRDEIEQL 246 (441)
Q Consensus 218 ~Le~l~~lK~~L~~l~~~v~~vre~l~~L 246 (441)
.--+|.+.++++-++..+++.+-..|.++
T Consensus 116 vsYqll~hr~e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 116 VSYQLLQHRREMEEMLERLQKLEARLKKL 144 (175)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999998888874
No 77
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=35.39 E-value=1.1e+02 Score=29.81 Aligned_cols=6 Identities=17% Similarity=0.910 Sum_probs=3.1
Q ss_pred HHHHHH
Q 013541 370 NQLIQF 375 (441)
Q Consensus 370 N~l~~~ 375 (441)
++..+.
T Consensus 6 ~~~~~~ 11 (248)
T PF11368_consen 6 KRILRF 11 (248)
T ss_pred HHHHHH
Confidence 345555
No 78
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=35.36 E-value=1.1e+02 Score=28.63 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013541 375 FELLLTTATFVVAIFGVVAGIFGMNFAIPF--FDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRR 437 (441)
Q Consensus 375 ~~l~LTi~t~i~~p~t~IaGifGMN~~~p~--~~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk~ 437 (441)
+.++|++++.+....++ +++=+...|. .....++|+.+++.++.++. .+|-||..|
T Consensus 24 ~QlvLgvVs~~iL~F~~---~~~~~~~~~~~~~G~~~gl~~a~~gl~~l~~s----i~~~fry~R 81 (183)
T PF12263_consen 24 IQLVLGVVSAVILLFAN---LFSGRATSPNRNPGLGIGLFLAICGLVALFFS----IFWSFRYTR 81 (183)
T ss_pred HHHHHHHHHHHHHHHHh---hccccCCCCCcCCCcchHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 34568888877766654 2344443333 22345666665555444443 566666543
No 79
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=35.03 E-value=3.3e+02 Score=25.68 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=56.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013541 173 YLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTS-KISTLNLERVR-RLKSRLVALTRRVQKVRDEIEQLMDDD 250 (441)
Q Consensus 173 ~LPFE~raLE~~L~~~~~~L~~~~~~Le~~~~~~Ld~L~~-~i~~~~Le~l~-~lK~~L~~l~~~v~~vre~l~~LLddD 250 (441)
|-.|.-.|+ +...++|+.|++.++...+....+-+.++. +.....-+... ++++.++.++...+.+|..+..+-+.|
T Consensus 68 ywsfps~a~-~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~d 146 (203)
T KOG3433|consen 68 YWSFPSEAI-CDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETD 146 (203)
T ss_pred ccccchHHH-HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 455554444 457788889999988777776665555543 23333333444 889999999999999999999998888
Q ss_pred chh
Q 013541 251 GDM 253 (441)
Q Consensus 251 ~dm 253 (441)
...
T Consensus 147 pqv 149 (203)
T KOG3433|consen 147 PQV 149 (203)
T ss_pred HHH
Confidence 765
No 80
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.53 E-value=2.4e+02 Score=23.88 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=22.4
Q ss_pred HHHhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 208 DELTSKISTL-NLERVRRLKSRLVALTRRVQKVRDEIEQL 246 (441)
Q Consensus 208 d~L~~~i~~~-~Le~l~~lK~~L~~l~~~v~~vre~l~~L 246 (441)
+.++.++... .-+.++.|+-++.++++.++.+...+..+
T Consensus 52 ~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 52 QALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444332 23556777777777777766666666554
No 81
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=33.91 E-value=1.1e+02 Score=29.64 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-CCCCCC
Q 013541 369 RNQLIQFELLLTTATFVVAIFGVVAGIFGMNFA-IPFFDE 407 (441)
Q Consensus 369 ~N~l~~~~l~LTi~t~i~~p~t~IaGifGMN~~-~p~~~~ 407 (441)
.|.++...+.+.-+-++|+-..+++++.+-=+. +|....
T Consensus 178 ~n~~~tW~lR~~G~llmf~G~~~~~~~l~~l~~~~P~lg~ 217 (248)
T PF07787_consen 178 ANNTLTWILRFIGWLLMFIGFFLLFSPLYTLVDWIPLLGN 217 (248)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeec
Confidence 344443333344444444445555555544333 666553
No 82
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=33.81 E-value=3.1e+02 Score=25.49 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 222 VRRLKSRLVALTRRVQKVRDEIEQL 246 (441)
Q Consensus 222 l~~lK~~L~~l~~~v~~vre~l~~L 246 (441)
+-.+.+++..|+.++.-+...|+.+
T Consensus 139 le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 139 LEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555544
No 83
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=33.25 E-value=78 Score=20.58 Aligned_cols=19 Identities=32% Similarity=0.593 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 013541 410 AFKWVLIITGVCGIIIFCA 428 (441)
Q Consensus 410 ~f~~v~~~~~~~~~~~~~~ 428 (441)
-|-|++|+..++++.++.+
T Consensus 3 YfaWilG~~lA~~~~i~~a 21 (28)
T PF08173_consen 3 YFAWILGVLLACAFGILNA 21 (28)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4556666666555554333
No 84
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=32.80 E-value=2.8e+02 Score=24.06 Aligned_cols=6 Identities=17% Similarity=0.219 Sum_probs=2.8
Q ss_pred HHHHHH
Q 013541 429 FVWFFK 434 (441)
Q Consensus 429 ~~~~fr 434 (441)
..+||+
T Consensus 54 ~~VYfw 59 (114)
T PF11023_consen 54 TAVYFW 59 (114)
T ss_pred HHHHHH
Confidence 444543
No 85
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=32.76 E-value=1e+02 Score=24.60 Aligned_cols=67 Identities=12% Similarity=0.063 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHhcCc
Q 013541 369 RNQLIQFELLLTTATF---VVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGI-IIFCAFVWFFKYRRL 438 (441)
Q Consensus 369 ~N~l~~~~l~LTi~t~---i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~~~~-~~~~~~~~~frrk~w 438 (441)
|+++.+..+.+-+--+ ++-..-++++.++.|-+ ......||...+..+..+. +..=.+++.+++|.|
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~---~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw 74 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYE---IGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPW 74 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCchHHHHHHHHHHHccCHHHhhheeeecccC
Confidence 4444444444444333 33333456666666521 2223334443333332222 122234556666766
No 86
>COG3462 Predicted membrane protein [Function unknown]
Probab=32.75 E-value=2.9e+02 Score=23.83 Aligned_cols=15 Identities=7% Similarity=-0.077 Sum_probs=6.7
Q ss_pred chhHHHHHHHHHHHH
Q 013541 409 AAFKWVLIITGVCGI 423 (441)
Q Consensus 409 ~~f~~v~~~~~~~~~ 423 (441)
||.|++.-++.++++
T Consensus 47 yGm~lImpI~~~vvl 61 (117)
T COG3462 47 YGMWLIMPIFWAVVL 61 (117)
T ss_pred hhhHHHHHHHHHHHH
Confidence 454544444444433
No 87
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=32.71 E-value=49 Score=36.76 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHHH
Q 013541 366 DNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGV 420 (441)
Q Consensus 366 ~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~ 420 (441)
...++|.+. +.+.+..+++.+++++.++-.+.. ...|.|.||+..+...+
T Consensus 159 ~p~k~R~~~----~~~~~~~~i~~~~~~~~ia~~~~~-~~~WRw~~~~~~i~~~i 208 (599)
T PF06609_consen 159 VPNKWRGLG----LAIASIPFIITTWISPLIAQLFAA-HSGWRWIFYIFIIWSGI 208 (599)
T ss_pred cccchhhhH----hHHHHHHHHhhhcccHHHHHHhcc-CCCcchHHHHHHHHHHH
Confidence 345677554 455566667777777788776642 34799999877654443
No 88
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=31.79 E-value=2.4e+02 Score=26.88 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013541 369 RNQLIQFELLLTTATFVVAIFGVVAGIFGM 398 (441)
Q Consensus 369 ~N~l~~~~l~LTi~t~i~~p~t~IaGifGM 398 (441)
..++-+-...|+.++.+.=...+++-++||
T Consensus 115 ~~~le~~l~~L~ti~~~aPllGLLGTV~Gm 144 (215)
T TIGR02796 115 SEKLESGLPFLATIGSTSPFIGLFGTVWGI 144 (215)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444433355555544445555666666
No 89
>PRK02870 heat shock protein HtpX; Provisional
Probab=31.71 E-value=1.8e+02 Score=29.92 Aligned_cols=29 Identities=24% Similarity=0.103 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013541 369 RNQLIQFELLLTTATFVVAIFGVVAGIFG 397 (441)
Q Consensus 369 ~N~l~~~~l~LTi~t~i~~p~t~IaGifG 397 (441)
+|++--..++.+.+.+.+..+.+++|+||
T Consensus 19 ~n~~kt~~l~~~~~~l~~~~g~~~~~~~~ 47 (336)
T PRK02870 19 RNRLKTRAVIATYLAIFLFIGLLVDAIRI 47 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34443333334444444455667777787
No 90
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=31.48 E-value=58 Score=37.95 Aligned_cols=9 Identities=0% Similarity=0.445 Sum_probs=5.7
Q ss_pred HHHHh-cCcC
Q 013541 431 WFFKY-RRLM 439 (441)
Q Consensus 431 ~~frr-k~wl 439 (441)
+|+|+ |+|+
T Consensus 894 ~~~r~~~~~~ 903 (903)
T PRK15122 894 FYIRRFGQWF 903 (903)
T ss_pred HHhhhccccC
Confidence 45554 7886
No 91
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=30.40 E-value=3.6e+02 Score=27.80 Aligned_cols=10 Identities=10% Similarity=0.029 Sum_probs=4.4
Q ss_pred HHHHHHHhhc
Q 013541 133 VELQRRLTAA 142 (441)
Q Consensus 133 ~~L~~rL~~~ 142 (441)
++..++|+..
T Consensus 23 ~~a~~~L~~~ 32 (399)
T TIGR02120 23 RAARLQLRER 32 (399)
T ss_pred HHHHHHHHHC
Confidence 3444455443
No 92
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=30.18 E-value=1.5e+02 Score=31.53 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=10.1
Q ss_pred HHHHHHHHHHH-HHHHhhcc
Q 013541 379 LTTATFVVAIF-GVVAGIFG 397 (441)
Q Consensus 379 LTi~t~i~~p~-t~IaGifG 397 (441)
+..+.++++|. -++.|++|
T Consensus 226 ~m~~m~~~~Pim~~~~g~~~ 245 (429)
T PRK00247 226 FLIVMAILAPIFPLSLGLTG 245 (429)
T ss_pred HHHHHHHHhHHHHHHHHHhc
Confidence 34444455553 34567776
No 93
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=30.14 E-value=1.1e+02 Score=22.23 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=6.7
Q ss_pred HHHHHHhhccc
Q 013541 388 IFGVVAGIFGM 398 (441)
Q Consensus 388 p~t~IaGifGM 398 (441)
.+.++++.+|+
T Consensus 10 vGg~l~~~lg~ 20 (48)
T PF04226_consen 10 VGGWLFGLLGI 20 (48)
T ss_pred HHHHHHHHhcc
Confidence 45566666666
No 94
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=29.96 E-value=3e+02 Score=22.24 Aligned_cols=26 Identities=8% Similarity=-0.120 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCC
Q 013541 378 LLTTATFVVAIFGVVAGIFGMNFAIP 403 (441)
Q Consensus 378 ~LTi~t~i~~p~t~IaGifGMN~~~p 403 (441)
..|++.+++-..-.+.+-||..-.-+
T Consensus 8 ~~tl~l~l~yf~~W~~~ay~~~~~~~ 33 (80)
T PF06196_consen 8 RWTLGLTLIYFAWWYGFAYGLGNGDG 33 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 35666666666667778888875544
No 95
>PF14163 SieB: Superinfection exclusion protein B
Probab=29.85 E-value=1.4e+02 Score=26.60 Aligned_cols=43 Identities=9% Similarity=-0.089 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHHHHHH
Q 013541 376 ELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGI 423 (441)
Q Consensus 376 ~l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~~~~ 423 (441)
++.+...+.+|+|-+++..+ |++-+ ...|++|+.+++.++++.
T Consensus 4 ~l~i~~~~llf~P~~~~~~l---~l~~~--~~~y~~~i~~~fl~s~s~ 46 (151)
T PF14163_consen 4 WLIIFSGLLLFLPESLLEWL---NLDKF--EIKYQPWIGLIFLFSVSY 46 (151)
T ss_pred HHHHHHHHHHHCCHHHHHHh---CcchH--HHhcchHHHHHHHHHHHH
Confidence 34566677788888877654 33222 233555544444443333
No 96
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=29.81 E-value=5.7e+02 Score=25.43 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Q 013541 180 ALEVALEAACTFLDSQAAELEIEAYPLLDELT---SKISTL---NLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDM 253 (441)
Q Consensus 180 aLE~~L~~~~~~L~~~~~~Le~~~~~~Ld~L~---~~i~~~---~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm 253 (441)
-+|+-|++-...++...+.++......--+++ ++.+.. .-..+-.|.+.+.+.+.....+|+-|.+|-.-.+|+
T Consensus 45 E~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 45 EIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 35666666666666666655555443322222 122111 123445666677777777777777777776666565
No 97
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=29.36 E-value=4.2e+02 Score=26.14 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=47.5
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q 013541 169 TSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLV-----ALTRRVQKVRDEI 243 (441)
Q Consensus 169 ~~~~~LPFE~raLE~~L~~~~~~L~~~~~~Le~~~~~~Ld~L~~~i~~~~Le~l~~lK~~L~-----~l~~~v~~vre~l 243 (441)
..|..+||. ++|.++...++.++.-....-..++..|..+-.++-...+.+--.|++++. .+.+...+.++.+
T Consensus 185 elp~f~p~~--afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i 262 (295)
T PF01031_consen 185 ELPGFVPES--AFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLKEAIKEAVQQLLEECREPAKEMI 262 (295)
T ss_dssp SSS-SCCHH--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677776 888888888877777777666666666666655544334444334444432 2344455566666
Q ss_pred HHHHcC
Q 013541 244 EQLMDD 249 (441)
Q Consensus 244 ~~LLdd 249 (441)
+++++.
T Consensus 263 ~~li~~ 268 (295)
T PF01031_consen 263 ENLIDM 268 (295)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666653
No 98
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=29.35 E-value=6.2e+02 Score=25.74 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 186 EAACTFLDSQAAELEIEAYPLLDEL 210 (441)
Q Consensus 186 ~~~~~~L~~~~~~Le~~~~~~Ld~L 210 (441)
..++..++.++..++..+..+-.+|
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l 193 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAEL 193 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777776666655544444
No 99
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=28.76 E-value=54 Score=25.79 Aligned_cols=54 Identities=15% Similarity=0.051 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhccc-cCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013541 379 LTTATFVVAIFGVVAGIFGM-NFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRR 437 (441)
Q Consensus 379 LTi~t~i~~p~t~IaGifGM-N~~~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk~ 437 (441)
-|-++=..+.+++..++++. |.-.| ..|++..+++.. +++ ++..+.=+|||+|+
T Consensus 5 ~tg~aYgtSag~~~~wl~~lld~~sp---~qW~aIGvi~gi-~~~-~lt~ltN~YFK~k~ 59 (68)
T PF04971_consen 5 TTGAAYGTSAGSAGYWLLQLLDQFSP---SQWAAIGVIGGI-FFG-LLTYLTNLYFKIKE 59 (68)
T ss_pred hhhhccccchhhHHHHHHHHHhccCc---ccchhHHHHHHH-HHH-HHHHHhHhhhhhhH
Confidence 44444444455565666654 32233 345544333322 122 23334578888764
No 100
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.61 E-value=1e+03 Score=27.93 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Q 013541 219 LERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGD 252 (441)
Q Consensus 219 Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~d 252 (441)
-+|++.+|+.|-.-+..++.=|+.|.++..+...
T Consensus 95 rerI~~vK~~L~~~k~ll~~~rdeLqklw~~~~q 128 (982)
T KOG3691|consen 95 RERIHNVKNNLEACKELLNTRRDELQKLWAENSQ 128 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 5788888888888888888888888888776543
No 101
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=28.55 E-value=37 Score=33.44 Aligned_cols=28 Identities=4% Similarity=-0.026 Sum_probs=16.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 407 EPAAFKWVLIITGVCGIIIFCAFVWFFK 434 (441)
Q Consensus 407 ~~~~f~~v~~~~~~~~~~~~~~~~~~fr 434 (441)
...|.|++|++.+++++++++=.++|++
T Consensus 225 ~~~giY~~wv~~~l~a~~~~~rs~yy~~ 252 (256)
T PF09788_consen 225 TYGGIYVSWVGLFLIALICLIRSIYYCC 252 (256)
T ss_pred hcCcEeHHHHHHHHHHHHHHHHhheeEE
Confidence 3346667777777666665555555543
No 102
>PRK10189 MATE family multidrug exporter; Provisional
Probab=28.49 E-value=1.5e+02 Score=31.57 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCcCC
Q 013541 426 FCAFVWFFKYRRLMP 440 (441)
Q Consensus 426 ~~~~~~~frrk~wl~ 440 (441)
.+.++++||+.||..
T Consensus 452 ~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 452 GVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHcCcccc
Confidence 334788999999964
No 103
>PRK14749 hypothetical protein; Provisional
Probab=27.98 E-value=1.5e+02 Score=19.58 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=13.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 013541 409 AAFKWVLIITGVCGIIIFCAFVW 431 (441)
Q Consensus 409 ~~f~~v~~~~~~~~~~~~~~~~~ 431 (441)
|-|-|++|+.++++..+.-++++
T Consensus 2 WYfaWiLG~~lAc~f~ilna~w~ 24 (30)
T PRK14749 2 WYLLWFVGILLMCSLSTLVLVWL 24 (30)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777766666554444443
No 104
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=27.75 E-value=1.6e+02 Score=26.95 Aligned_cols=24 Identities=25% Similarity=0.539 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 013541 375 FELLLTTATFVVAIFGVVAGIFGM 398 (441)
Q Consensus 375 ~~l~LTi~t~i~~p~t~IaGifGM 398 (441)
++..||+++=+....-+..|+.+|
T Consensus 17 iD~~lT~~aW~gfi~l~~~~~~~~ 40 (153)
T PRK14584 17 IDIILTALAWFGFLFLLVRGLLEM 40 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688888777777888999999
No 105
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=27.68 E-value=2e+02 Score=33.68 Aligned_cols=65 Identities=12% Similarity=0.191 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 013541 369 RNQLIQFELLLTTA---TFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRRL 438 (441)
Q Consensus 369 ~N~l~~~~l~LTi~---t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk~w 438 (441)
+|+.......++++ ..++.|.+.+.++|||. ++|. ..+.|.+++.+..+++.-+.=.+|+||-||
T Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~l~~----~~~~~~~~~~~~~~~~~e~~K~~~~~~~~~ 901 (902)
T PRK10517 834 QSRAAWPLMIMTLIVMAVGIALPFSPLASYLQLQ-ALPL----SYFPWLVAILAGYMTLTQLVKGFYSRRYGW 901 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCc-CCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45544443333333 33445555678888886 2331 122222222222223333334678888776
No 106
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=27.68 E-value=3.8e+02 Score=27.47 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 013541 219 LERVRRLKSRLVALTRRVQKVRDEIEQLMD 248 (441)
Q Consensus 219 Le~l~~lK~~L~~l~~~v~~vre~l~~LLd 248 (441)
-..|..+-++|.+|+++++.++..|.++..
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 356777888888889999998888887754
No 107
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=27.31 E-value=79 Score=30.62 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 410 AFKWVLIITGVCGIIIFCAFVWFFK 434 (441)
Q Consensus 410 ~f~~v~~~~~~~~~~~~~~~~~~fr 434 (441)
+++|+.+.|+++.++.|+.|+++.+
T Consensus 214 ~s~wf~~~miI~v~~sFVsMiliiq 238 (244)
T KOG2678|consen 214 LSYWFYITMIIFVILSFVSMILIIQ 238 (244)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455545555555556666666554
No 108
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=27.27 E-value=1.1e+02 Score=20.15 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHH
Q 013541 410 AFKWVLIITGVCGIII 425 (441)
Q Consensus 410 ~f~~v~~~~~~~~~~~ 425 (441)
-|-|++|+..++++.+
T Consensus 3 YfaWilG~~lA~~~~v 18 (30)
T TIGR02106 3 YFAWILGTLLACAFGV 18 (30)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3556666655555443
No 109
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=27.22 E-value=3.5e+02 Score=23.35 Aligned_cols=9 Identities=22% Similarity=0.036 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 013541 379 LTTATFVVA 387 (441)
Q Consensus 379 LTi~t~i~~ 387 (441)
|.++.++++
T Consensus 50 Lli~G~~li 58 (115)
T PF05915_consen 50 LLIFGTVLI 58 (115)
T ss_pred HHHHHHHHH
Confidence 444443333
No 110
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=27.11 E-value=1.1e+02 Score=33.20 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=49.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 013541 322 TTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFI-NIQL--DNVRNQLIQFELLLTTATFVVAIFGVVAGIFG- 397 (441)
Q Consensus 322 ~~~~~eelE~LLE~Y~~~id~~~~~~~~l~~~i~~~e~~i-~i~L--~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifG- 397 (441)
..+..+-+|+-|.+..++.+.+...=.+|+..++.+..-= ...+ -..+|+=. .-.+.+|+..+.||.-.||
T Consensus 300 KKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk-----~Rkvvaimv~maFi~f~~~~ 374 (655)
T KOG4343|consen 300 KKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKK-----KRKVVAIMVVMAFIIFNYGS 374 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCccccccc-----chhhhhHHHHHHHHHHhccC
Confidence 4567788899999999998888877777777666553310 0011 11223322 2355667777788888888
Q ss_pred -ccCCCCC
Q 013541 398 -MNFAIPF 404 (441)
Q Consensus 398 -MN~~~p~ 404 (441)
||+..+.
T Consensus 375 p~ni~nnl 382 (655)
T KOG4343|consen 375 PMNILNNL 382 (655)
T ss_pred cccccCCc
Confidence 8887444
No 111
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=26.96 E-value=75 Score=31.88 Aligned_cols=14 Identities=14% Similarity=0.496 Sum_probs=10.3
Q ss_pred HHHHHHHHHcCCch
Q 013541 239 VRDEIEQLMDDDGD 252 (441)
Q Consensus 239 vre~l~~LLddD~d 252 (441)
+-+-++++..|+.+
T Consensus 112 l~e~~~~~fg~e~~ 125 (295)
T TIGR01478 112 LLEKYEEMFGDESH 125 (295)
T ss_pred HHHHHHHHhCCccc
Confidence 45667777788888
No 112
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=26.44 E-value=2.3e+02 Score=21.79 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=9.0
Q ss_pred HhhccccCC-CCCCCCC
Q 013541 393 AGIFGMNFA-IPFFDEP 408 (441)
Q Consensus 393 aGifGMN~~-~p~~~~~ 408 (441)
.+..|=-++ .+..+.|
T Consensus 21 ~~~~~syVd~~G~L~Ep 37 (63)
T PF13127_consen 21 FNIIGSYVDEDGVLHEP 37 (63)
T ss_pred HhcccceECCCCeEecc
Confidence 344444444 6667777
No 113
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=26.19 E-value=2.3e+02 Score=23.39 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhhccccCC
Q 013541 378 LLTTATFVVAIFGVVAGIFGMNFA 401 (441)
Q Consensus 378 ~LTi~t~i~~p~t~IaGifGMN~~ 401 (441)
.+-++.+++++++.++|+.-+..-
T Consensus 7 wll~~G~l~~~~A~~~G~~d~~~~ 30 (104)
T PF09990_consen 7 WLLVLGLLGAIVAVLTGFVDLLTV 30 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466778888888888888877654
No 114
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=26.04 E-value=2.6e+02 Score=23.64 Aligned_cols=18 Identities=11% Similarity=0.312 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 013541 378 LLTTATFVVAIFGVVAGI 395 (441)
Q Consensus 378 ~LTi~t~i~~p~t~IaGi 395 (441)
++.+++.++...+++.++
T Consensus 46 vl~~~~l~~l~~al~~~l 63 (121)
T PF07332_consen 46 VLALLALLFLLVALVFAL 63 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555544444443
No 115
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=25.97 E-value=1e+03 Score=27.06 Aligned_cols=128 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHH
Q 013541 185 LEAACTFLDSQAAELEI---EAYPLLDELTSKISTL------NLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAE 255 (441)
Q Consensus 185 L~~~~~~L~~~~~~Le~---~~~~~Ld~L~~~i~~~------~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~ 255 (441)
|......+......|+. .+....+.+...+... .-+.|..|++.|..+...+..+-+.|+......+|.
T Consensus 6 l~qlt~i~~~~~~~L~~~i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~~v~~ie~~-- 83 (683)
T PF08580_consen 6 LSQLTSILLPIALYLSESIPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEVYVSAIEDL-- 83 (683)
T ss_pred HHHHHhcccchHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccccc--
Q ss_pred HhhhhhhhhhcccccCccccccccCCCccccCCCCCCCCCCCCchhhhhhhhhhhhccccccCCCCCcccHHH-HHHHHH
Q 013541 256 MYLTEKKSRMEASFYGDQSVLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEE-LEMLLE 334 (441)
Q Consensus 256 m~Lt~k~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~rd~~d~~~~~~~~~~~~ee-lE~LLE 334 (441)
....++.+ ++.+.|
T Consensus 84 -----------------------------------------------------------------q~r~di~~~~~dl~e 98 (683)
T PF08580_consen 84 -----------------------------------------------------------------QLREDIANSLFDLIE 98 (683)
T ss_pred -----------------------------------------------------------------cccccccccHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHH
Q 013541 335 AYFVVIDSTLNKLTSLKEYIDDT---EDFINIQLDNVRNQLIQFELLL 379 (441)
Q Consensus 335 ~Y~~~id~~~~~~~~l~~~i~~~---e~~i~i~L~~~~N~l~~~~l~L 379 (441)
..-+-...+-..+..+++++|.. +|+++..|+...+.+-.....+
T Consensus 99 ~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~v 146 (683)
T PF08580_consen 99 EVSQMELDVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLV 146 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
No 116
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=25.73 E-value=1.1e+02 Score=28.03 Aligned_cols=39 Identities=15% Similarity=0.394 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCchhHHH
Q 013541 218 NLERVRRLKSRLVALTRRV---QKVRDEIEQLMDDDGDMAEM 256 (441)
Q Consensus 218 ~Le~l~~lK~~L~~l~~~v---~~vre~l~~LLddD~dm~~m 256 (441)
.|.+|..+|++|..|++.+ ..+|+.|++++.|.+.+..+
T Consensus 110 ~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~l 151 (157)
T PF05591_consen 110 ELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEKL 151 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHHH
Confidence 5778899999999999886 56899999999988777543
No 117
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=25.69 E-value=1e+02 Score=22.01 Aligned_cols=11 Identities=27% Similarity=0.199 Sum_probs=5.2
Q ss_pred HHHHHHHhcCc
Q 013541 428 AFVWFFKYRRL 438 (441)
Q Consensus 428 ~~~~~frrk~w 438 (441)
+.+.+.++|++
T Consensus 22 ~~~~~~~~r~~ 32 (46)
T PF04995_consen 22 IVWSLRRRRRL 32 (46)
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 118
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=25.58 E-value=88 Score=22.28 Aligned_cols=6 Identities=33% Similarity=0.052 Sum_probs=3.0
Q ss_pred CchhHH
Q 013541 408 PAAFKW 413 (441)
Q Consensus 408 ~~~f~~ 413 (441)
.||||+
T Consensus 3 gy~~yV 8 (45)
T TIGR03141 3 GYAFYV 8 (45)
T ss_pred CccHHH
Confidence 355554
No 119
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=25.44 E-value=5.9e+02 Score=25.54 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 013541 192 LDSQAAELEIEAYPLLDELTSKIST 216 (441)
Q Consensus 192 L~~~~~~Le~~~~~~Ld~L~~~i~~ 216 (441)
+...+.+|-..+...++.|+..+++
T Consensus 131 yHr~vVeLL~laa~fi~~Le~~Let 155 (277)
T PF15003_consen 131 YHRYVVELLELAASFIEKLEEHLET 155 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333433444455666665543
No 120
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.44 E-value=4.5e+02 Score=22.87 Aligned_cols=38 Identities=37% Similarity=0.575 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHcCCchhHHHh
Q 013541 220 ERVRRLKSRLVALTRRVQKVR-------DEIEQLMDDDGDMAEMY 257 (441)
Q Consensus 220 e~l~~lK~~L~~l~~~v~~vr-------e~l~~LLddD~dm~~m~ 257 (441)
.++..+++++..+..+-...- +.+++|-.|=.||..||
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 455666667777766666655 34556666667888887
No 121
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=25.38 E-value=42 Score=26.78 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 013541 415 LIITGVCGIIIFCAFVWFFKYRR 437 (441)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~frrk~ 437 (441)
+-+.+++|++..+..++.||||+
T Consensus 36 iPl~L~LCiLvl~yai~~fkrkG 58 (74)
T PF11857_consen 36 IPLVLLLCILVLIYAIFQFKRKG 58 (74)
T ss_pred HHHHHHHHHHHHHHHhheeeecC
Confidence 33445566666666788899986
No 122
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=25.16 E-value=1.4e+02 Score=33.09 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhccccCC
Q 013541 379 LTTATFVVAIFGVVAGIFGMNFA 401 (441)
Q Consensus 379 LTi~t~i~~p~t~IaGifGMN~~ 401 (441)
+..++.+++..+++..+||+|+.
T Consensus 219 ~~a~~~~l~~~~~~~~~~gt~~~ 241 (576)
T TIGR00353 219 FKAWTLLLAILAFSLSLLGTFIV 241 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888888999999999983
No 123
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=25.10 E-value=5.8e+02 Score=23.96 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchhHHHhhhhhh
Q 013541 222 VRRLKSRLVALTRRVQKVRDEIEQLM-DDDGDMAEMYLTEKK 262 (441)
Q Consensus 222 l~~lK~~L~~l~~~v~~vre~l~~LL-ddD~dm~~m~Lt~k~ 262 (441)
-..+++++......+....+-...-+ ..++|++.-+|.++.
T Consensus 53 ~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~ 94 (221)
T PF04012_consen 53 QKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKA 94 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566666677776666655444444 457788887777654
No 124
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=24.71 E-value=1.3e+02 Score=27.72 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCchhHH
Q 013541 218 NLERVRRLKSRLVALTRRV---QKVRDEIEQLMDDDGDMAE 255 (441)
Q Consensus 218 ~Le~l~~lK~~L~~l~~~v---~~vre~l~~LLddD~dm~~ 255 (441)
.|.+|..+|++|..|++.+ ..+|+.|+++|.|.+.+..
T Consensus 111 ~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~~ 151 (159)
T TIGR03358 111 ELKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLEK 151 (159)
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHHH
Confidence 4778899999999999986 5699999999988776654
No 125
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=24.64 E-value=2.9e+02 Score=21.36 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCC
Q 013541 377 LLLTTATFVVAIFGVVAGIFGMNFAI 402 (441)
Q Consensus 377 l~LTi~t~i~~p~t~IaGifGMN~~~ 402 (441)
.+++.+++..+.+++.+.+-||=|+.
T Consensus 8 ivlAtiavFiaLagl~~~I~GlLfD~ 33 (62)
T PF11177_consen 8 IVLATIAVFIALAGLAAVIHGLLFDE 33 (62)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 35778888888888999999997653
No 126
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=24.42 E-value=99 Score=25.57 Aligned_cols=12 Identities=8% Similarity=-0.244 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 013541 412 KWVLIITGVCGI 423 (441)
Q Consensus 412 ~~v~~~~~~~~~ 423 (441)
|.++.+++++.+
T Consensus 37 ~lvI~~iFil~V 48 (94)
T PF05393_consen 37 FLVICGIFILLV 48 (94)
T ss_pred HHHHHHHHHHHH
Confidence 334444433333
No 127
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=24.28 E-value=1e+02 Score=24.58 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013541 377 LLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYR 436 (441)
Q Consensus 377 l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk 436 (441)
..++.+-.+++..+|+.|++=-|+. ..++...++. ++++++++=-|-+++|.
T Consensus 11 ~l~~~il~~~~iisfi~Gy~~q~~~-------~~~~~~~~g~-~~~~lv~vP~Wp~y~r~ 62 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVGYITQSFS-------YTFYIYGAGV-VLTLLVVVPPWPFYNRH 62 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHHhheeCCcHhhcCC
Confidence 3466677777888889998877653 2333333332 33333334445565553
No 128
>PF12669 P12: Virus attachment protein p12 family
Probab=23.73 E-value=74 Score=24.07 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=4.8
Q ss_pred HHHHHHHHHhc
Q 013541 426 FCAFVWFFKYR 436 (441)
Q Consensus 426 ~~~~~~~frrk 436 (441)
|++...++|++
T Consensus 14 ~v~~r~~~k~~ 24 (58)
T PF12669_consen 14 YVAIRKFIKDK 24 (58)
T ss_pred HHHHHHHHHHh
Confidence 33334455443
No 129
>PRK03072 heat shock protein HtpX; Provisional
Probab=23.68 E-value=5.3e+02 Score=25.70 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 358 EDFINIQLDNVRNQLIQFELLLTTAT 383 (441)
Q Consensus 358 e~~i~i~L~~~~N~l~~~~l~LTi~t 383 (441)
+.++--.++...|+-+..+...+.+.
T Consensus 128 ~aVlAHElgHi~~~d~~~~~~~~~~~ 153 (288)
T PRK03072 128 RGVLGHELSHVYNRDILISSVAGALA 153 (288)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34455556666666555544444443
No 130
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=23.47 E-value=2.8e+02 Score=25.75 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=18.2
Q ss_pred ccccCC-CCCCCCCchhHHHHHHHHHHHH
Q 013541 396 FGMNFA-IPFFDEPAAFKWVLIITGVCGI 423 (441)
Q Consensus 396 fGMN~~-~p~~~~~~~f~~v~~~~~~~~~ 423 (441)
|=||+. -|...||.-.++..=+++++++
T Consensus 79 yP~~iGGKP~~S~Pafipi~FEltVL~aa 107 (173)
T PF11821_consen 79 YPLNIGGKPLFSWPAFIPITFELTVLFAA 107 (173)
T ss_pred cceecCCCCCCCCcccchHHHHHHHHHHH
Confidence 677777 7888887666665555555443
No 131
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=23.36 E-value=3.9e+02 Score=21.39 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013541 179 RALEVALEAACTFLDSQAA 197 (441)
Q Consensus 179 raLE~~L~~~~~~L~~~~~ 197 (441)
-+|=+++.-+...+...++
T Consensus 11 ~vLvi~l~~~l~~l~~~l~ 29 (90)
T PF06103_consen 11 AVLVIFLIKVLKKLKKTLD 29 (90)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 132
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=23.20 E-value=22 Score=34.31 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=16.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013541 402 IPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRR 437 (441)
Q Consensus 402 ~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk~ 437 (441)
-|...+..|.++++++.+++++ +.+||||-+|
T Consensus 153 ~pekks~~g~ll~lllv~l~gG----Ga~yYfK~~K 184 (218)
T PF14283_consen 153 EPEKKSGMGSLLLLLLVALIGG----GAYYYFKFYK 184 (218)
T ss_pred CcccccchHHHHHHHHHHHhhc----ceEEEEEEec
Confidence 4444455555444433333332 4678887544
No 133
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=22.69 E-value=3.1e+02 Score=24.33 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=19.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHH
Q 013541 173 YLPFEFRALEVALEAACTFLDSQAA 197 (441)
Q Consensus 173 ~LPFE~raLE~~L~~~~~~L~~~~~ 197 (441)
..-+.+.+||+|..+.=..+..++.
T Consensus 57 vql~AL~LLe~~vkNCG~~fh~eva 81 (142)
T cd03569 57 VQLYALLLLESCVKNCGTHFHDEVA 81 (142)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHh
Confidence 3468889999999987666776666
No 134
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=22.63 E-value=3.9e+02 Score=27.06 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Q 013541 218 NLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDM 253 (441)
Q Consensus 218 ~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm 253 (441)
.-.||-+.|.+|..+.+|+..++.-+++|-....-+
T Consensus 41 I~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi 76 (297)
T PF11945_consen 41 ISARVERNRERLQAIQQRIEVAQAKIEKLQGSKKAI 76 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 346778888999999999999999999987765543
No 135
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=22.49 E-value=2.3e+02 Score=30.07 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=28.7
Q ss_pred HHHHHHHH--HHHHHHHhhccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q 013541 379 LTTATFVV--AIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRRLM 439 (441)
Q Consensus 379 LTi~t~i~--~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk~wl 439 (441)
.++++... .|.+.+.+.|. + ...|.|+...+..++..+ ..++++++++|-
T Consensus 395 ~~~~~~~~~~lp~~~~l~~~~--~------g~~Gvw~~~~~~~~~~~~---~~~~~~~~~~~~ 446 (455)
T COG0534 395 ISLLSYWGFRLPLAYLLGFFF--L------GLAGVWIGFPLSLILRAI---LLLLRLRRGRWR 446 (455)
T ss_pred HHHHHHHHHHHhHHHHHhhhc--c------cchHHHHHHHHHHHHHHH---HHHHHHHHhhhh
Confidence 44444333 67777777755 1 124666555544443333 478888888874
No 136
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=22.27 E-value=1.3e+02 Score=26.74 Aligned_cols=9 Identities=11% Similarity=0.298 Sum_probs=4.3
Q ss_pred chhHHHHHH
Q 013541 409 AAFKWVLII 417 (441)
Q Consensus 409 ~~f~~v~~~ 417 (441)
+|+|+++++
T Consensus 21 ~GWwll~~l 29 (146)
T PF14316_consen 21 PGWWLLLAL 29 (146)
T ss_pred HHHHHHHHH
Confidence 455544444
No 137
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=21.90 E-value=5.6e+02 Score=22.62 Aligned_cols=11 Identities=9% Similarity=0.377 Sum_probs=5.4
Q ss_pred CCchhHHHhhh
Q 013541 249 DDGDMAEMYLT 259 (441)
Q Consensus 249 dD~dm~~m~Lt 259 (441)
..+++..++..
T Consensus 105 ~~~eL~~L~~~ 115 (142)
T PF04048_consen 105 RREELKELWQR 115 (142)
T ss_pred CCHHHHHHHHH
Confidence 44555555433
No 138
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=21.71 E-value=1.6e+02 Score=27.90 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 013541 379 LTTATFVVAIFGVVAGIFGM 398 (441)
Q Consensus 379 LTi~t~i~~p~t~IaGifGM 398 (441)
++...+.+.|..+++|.|||
T Consensus 40 ~S~l~~vyG~~l~~~~~~~~ 59 (196)
T PF06770_consen 40 CSGLVFVYGPLLLLVTTWGV 59 (196)
T ss_pred ehHHHHHHHHHHHHHHHHHH
Confidence 56678888889999999998
No 139
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.49 E-value=3.8e+02 Score=28.32 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013541 342 STLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGM 398 (441)
Q Consensus 342 ~~~~~~~~l~~~i~~~e~~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifGM 398 (441)
+|-+++..|.+..+-..++.++.-.+..|+-+.. |+.+-.+++..-++.++|+|
T Consensus 337 eI~qRv~vLN~kl~~i~~~~~~l~e~ln~r~~~~---LEWiIIiLI~~eV~i~i~~i 390 (399)
T KOG2861|consen 337 EIGQRVNVLNYKLKVIEDLLDILQENLNERHSER---LEWIIIILIAFEVAIEIYQI 390 (399)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhhccccc---eehhhHHHHHHHHHHHHHHH
Confidence 3667888888888888888888777666665554 55555555555555555543
No 140
>KOG3176 consensus Predicted alpha-helical protein, potentially involved in replication/repair [Replication, recombination and repair]
Probab=21.37 E-value=7.5e+02 Score=23.93 Aligned_cols=75 Identities=21% Similarity=0.402 Sum_probs=44.4
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 013541 169 TSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMD 248 (441)
Q Consensus 169 ~~~~~LPFE~raLE~~L~~~~~~L~~~~~~Le~~~~~~Ld~L~~~i~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLd 248 (441)
..|+-|||+...+|.+|+.+- ..-..++..+. =..|...+....|+|+.-+=+. -+|-|++++-.-...+++
T Consensus 40 ~APeLLp~~~elve~~ldqIe----~~eE~i~~~a~--~~dlr~~~~qmELERvkfvlrS--YlRcRL~KIekf~~~~ln 111 (223)
T KOG3176|consen 40 CAPELLPYALELVERLLDQIE----HMEETIERKAS--NKDLRVSLHQMELERVKFVLRS--YLRCRLQKIEKFLQHILN 111 (223)
T ss_pred cChhhcCChHHHHHHHHHHHH----HHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHhhc
Confidence 457889999988888886543 22222221110 0123344555678888754333 367777777777777777
Q ss_pred CCc
Q 013541 249 DDG 251 (441)
Q Consensus 249 dD~ 251 (441)
.++
T Consensus 112 ~ee 114 (223)
T KOG3176|consen 112 QEE 114 (223)
T ss_pred chh
Confidence 654
No 141
>PRK07668 hypothetical protein; Validated
Probab=21.35 E-value=8e+02 Score=24.25 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 326 VEELEMLLEAYFVVIDSTLNKLTSL 350 (441)
Q Consensus 326 ~eelE~LLE~Y~~~id~~~~~~~~l 350 (441)
-+|.|.+++.|..++-+-.+.=.+.
T Consensus 24 eeeieeiL~Ei~~hLlEgQk~GkTA 48 (254)
T PRK07668 24 EEDIESFLEDAELHLIEGEKDGKTV 48 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 4666777776666665544433333
No 142
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=21.28 E-value=4.1e+02 Score=23.13 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=19.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHH
Q 013541 173 YLPFEFRALEVALEAACTFLDSQAA 197 (441)
Q Consensus 173 ~LPFE~raLE~~L~~~~~~L~~~~~ 197 (441)
..-+.+.+||+|..+.-..+..++.
T Consensus 53 v~l~AL~lLe~~vkNcg~~f~~ev~ 77 (133)
T smart00288 53 VALLALTLLDACVKNCGSKFHLEVA 77 (133)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3468899999999998777766665
No 143
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=21.17 E-value=1.9e+02 Score=31.93 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhccccCC-CCCCCC
Q 013541 379 LTTATFVVAIFGVVAGIFGMNFA-IPFFDE 407 (441)
Q Consensus 379 LTi~t~i~~p~t~IaGifGMN~~-~p~~~~ 407 (441)
+..++++++..+++..+||+|+. .+...+
T Consensus 273 ~~a~~~~l~~~~~~~s~~Gt~~~rsGvl~s 302 (571)
T PRK10369 273 FRHWSLLLAIVTLILSLLGTLIVRSGILVS 302 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 66677888888999999999975 443333
No 144
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=21.05 E-value=5.8e+02 Score=22.48 Aligned_cols=10 Identities=20% Similarity=0.165 Sum_probs=4.6
Q ss_pred HHHHhhcccc
Q 013541 390 GVVAGIFGMN 399 (441)
Q Consensus 390 t~IaGifGMN 399 (441)
++++|+|+-.
T Consensus 92 ~~~~~~~~~~ 101 (142)
T PF11712_consen 92 VFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHH
Confidence 3445554443
No 145
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.04 E-value=4.6e+02 Score=22.07 Aligned_cols=53 Identities=25% Similarity=0.470 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 013541 192 LDSQAAELEIEAYPLLDELTS--KISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDD 249 (441)
Q Consensus 192 L~~~~~~Le~~~~~~Ld~L~~--~i~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLdd 249 (441)
.+..+..+|.. ++.|.+ .+..+. -++-.++-++..+..+++++....+-|+++
T Consensus 47 ~~~Rl~~lE~~----l~~LPt~~dv~~L~-l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 47 HDRRLQALETK----LEHLPTRDDVHDLQ-LELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHH----HHhCCCHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544444 455533 233322 246788889999999999998888888764
No 146
>PHA00645 hypothetical protein
Probab=21.03 E-value=1.8e+02 Score=24.84 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHH
Q 013541 382 ATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITG 419 (441)
Q Consensus 382 ~t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~ 419 (441)
++++|=+..+|.-+- -|+++|..+.|..|+|++++.+
T Consensus 17 fn~V~DIFmkImDwm-W~lKLP~Tnipl~v~wviggVi 53 (125)
T PHA00645 17 FSFVFDIFLFIFDVI-WNTKLPMTNTSIAYFLVFFMVI 53 (125)
T ss_pred HHHHHHHHHHHHHHH-HHccCCCCCCchHHHHHHHHHH
Confidence 334444444443321 2788999999988888776543
No 147
>PRK11403 hypothetical protein; Provisional
Probab=21.01 E-value=2.3e+02 Score=24.45 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHHHHH
Q 013541 376 ELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCG 422 (441)
Q Consensus 376 ~l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~~~ 422 (441)
-+..+-++++....+++.|+|-= .|.. +..|||+.+.+++..+
T Consensus 4 ~r~~sw~aL~~G~~~YliGLWnA--~m~L--neKGYyf~vL~~GlF~ 46 (113)
T PRK11403 4 SKTVAKLLFVVGALVYLVGLWIS--CPLL--SGKGYFLGVLMTATFG 46 (113)
T ss_pred hHHHHHHHHHHHHHHHHHHhccc--cccc--CccchhHHHHHHHHHH
Confidence 34467778888888899999843 3444 3467776666555444
No 148
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=20.86 E-value=9.3e+02 Score=24.79 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=5.0
Q ss_pred HHHHHHHhhc
Q 013541 133 VELQRRLTAA 142 (441)
Q Consensus 133 ~~L~~rL~~~ 142 (441)
++..++|+..
T Consensus 29 ~~a~~~L~~~ 38 (399)
T PRK10573 29 LLLYQALQQQ 38 (399)
T ss_pred HHHHHHHHHC
Confidence 3444555544
No 149
>COG4241 Predicted membrane protein [Function unknown]
Probab=20.78 E-value=4.4e+02 Score=26.79 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-------ccccCCCCCCCCCchhHHHHHH
Q 013541 372 LIQFELLLTTATFVVAIFGVVAGI-------FGMNFAIPFFDEPAAFKWVLII 417 (441)
Q Consensus 372 l~~~~l~LTi~t~i~~p~t~IaGi-------fGMN~~~p~~~~~~~f~~v~~~ 417 (441)
.+..=-.+++++++++-.|.+.|. ++-|.-.|...|..+..+.+..
T Consensus 169 ~~lgP~~ivi~~~i~a~~t~~vg~pilrR~~~~v~~~~p~~~~~f~~~fl~~y 221 (314)
T COG4241 169 LYLGPGRIVIFGTIFALMTLLVGFPILRRLKIKVPIFLPFRNWTFPNSFLFWY 221 (314)
T ss_pred HhhCCceeehhHHHHHHHHHHHhHHHHHhCCccCCCccceeeEeechHHHHHH
Confidence 343334578889999999988886 5666557777777665444433
No 150
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=20.65 E-value=1.3e+03 Score=26.52 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 013541 218 NLERVRRLKSRLVALTRRVQKVRDEIEQLMD 248 (441)
Q Consensus 218 ~Le~l~~lK~~L~~l~~~v~~vre~l~~LLd 248 (441)
.+.++..++.+...|+.++..+++.+..+-.
T Consensus 68 ~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~ 98 (766)
T PF10191_consen 68 VLREVDRLRQEAASLQEQMASVQEEIKAVEQ 98 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4677888899999999999999998887643
No 151
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=20.65 E-value=33 Score=31.03 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 013541 379 LTTATFVVAIFGVVAGIFG 397 (441)
Q Consensus 379 LTi~t~i~~p~t~IaGifG 397 (441)
++++.++++...+..|+|.
T Consensus 9 ~n~l~~l~g~~li~~g~~~ 27 (221)
T PF00335_consen 9 LNVLFLLLGLALIGVGIWL 27 (221)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444445556665
No 152
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.49 E-value=1.9e+02 Score=21.77 Aligned_cols=33 Identities=12% Similarity=0.431 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHH
Q 013541 224 RLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEM 256 (441)
Q Consensus 224 ~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~m 256 (441)
.++..+..+++..+.+++.++++-++=.++..+
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333333
No 153
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=20.49 E-value=2.7e+02 Score=28.22 Aligned_cols=9 Identities=11% Similarity=0.298 Sum_probs=5.6
Q ss_pred HHHHHhhcc
Q 013541 389 FGVVAGIFG 397 (441)
Q Consensus 389 ~t~IaGifG 397 (441)
..+.+++|+
T Consensus 75 ivlw~~l~S 83 (308)
T PF14800_consen 75 IVLWANLYS 83 (308)
T ss_pred HHHHHHHHc
Confidence 445667776
No 154
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.26 E-value=4e+02 Score=20.62 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 223 RRLKSRLVALTRRVQKVRDEIEQL 246 (441)
Q Consensus 223 ~~lK~~L~~l~~~v~~vre~l~~L 246 (441)
..-.+.+..+++.++.+++-+..+
T Consensus 28 ~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 28 TEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555544444
Done!