Query 013541
Match_columns 441
No_of_seqs 257 out of 1642
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:31:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 1.4E-53 4.9E-58 413.2 29.2 239 49-372 16-261 (261)
2 2iub_A CORA, divalent cation t 100.0 5.2E-37 1.8E-41 312.4 24.4 276 47-439 68-363 (363)
3 4ev6_A Magnesium transport pro 100.0 1.5E-35 5.1E-40 299.0 27.0 276 47-439 47-339 (339)
4 4egw_A Magnesium transport pro 99.7 5E-16 1.7E-20 152.1 19.5 212 46-377 46-280 (280)
5 3ck6_A Putative membrane trans 99.5 5.4E-13 1.8E-17 128.2 18.5 200 51-376 32-252 (252)
6 3nvo_A Zinc transport protein 99.5 9E-13 3.1E-17 127.4 18.0 163 47-252 39-219 (264)
7 2bbh_A Divalent cation transpo 99.3 7E-12 2.4E-16 121.5 11.3 158 47-250 59-242 (269)
8 2hn1_A CORA, magnesium and cob 99.1 1.4E-10 4.7E-15 112.3 7.8 165 47-252 64-244 (266)
9 4ev6_A Magnesium transport pro 91.9 1.6 5.5E-05 42.9 12.7 94 340-438 239-335 (339)
10 2iub_A CORA, divalent cation t 86.1 1.7 5.7E-05 43.3 7.9 94 340-438 263-359 (363)
11 1nfn_A Apolipoprotein E3; lipi 75.5 8.3 0.00028 34.9 7.8 74 175-250 55-129 (191)
12 2ks1_B Epidermal growth factor 71.8 4.9 0.00017 27.8 4.0 11 427-437 29-39 (44)
13 3v86_A De novo design helix; c 69.8 9.3 0.00032 22.8 4.3 25 222-246 2-26 (27)
14 3swf_A CGMP-gated cation chann 68.7 26 0.0009 26.8 7.9 49 186-242 6-54 (74)
15 3s84_A Apolipoprotein A-IV; fo 61.8 1.1E+02 0.0037 29.1 12.9 21 227-247 44-64 (273)
16 3ghg_A Fibrinogen alpha chain; 58.7 84 0.0029 32.7 11.9 42 326-367 119-160 (562)
17 2jwa_A Receptor tyrosine-prote 51.7 26 0.0009 24.2 4.7 17 421-437 23-39 (44)
18 2k21_A Potassium voltage-gated 51.6 11 0.00036 32.1 3.2 32 406-437 48-79 (138)
19 2k1k_A Ephrin type-A receptor 50.0 17 0.00057 24.3 3.4 11 427-437 28-38 (38)
20 2k1a_A Integrin alpha-IIB; sin 49.9 37 0.0013 23.1 5.2 28 412-439 10-37 (42)
21 2l2t_A Receptor tyrosine-prote 48.6 31 0.0011 23.8 4.7 11 427-437 28-38 (44)
22 2l7b_A Apolipoprotein E, APO-E 48.0 20 0.00068 34.9 5.1 32 220-251 106-138 (307)
23 2k9y_A Ephrin type-A receptor 47.7 19 0.00065 23.9 3.5 7 430-436 33-39 (41)
24 3swy_A Cyclic nucleotide-gated 46.9 68 0.0023 22.3 6.3 42 186-235 4-45 (46)
25 1txp_A HnRNP C, heterogeneous 46.3 19 0.00065 22.2 2.9 24 223-246 2-25 (28)
26 3onj_A T-snare VTI1; helix, HA 45.3 1.1E+02 0.0036 24.3 8.3 20 220-239 72-92 (97)
27 1t3u_A Conserved hypothetical 45.2 60 0.002 25.9 6.9 70 182-252 25-100 (104)
28 3r2p_A Apolipoprotein A-I; amp 42.8 1.3E+02 0.0044 26.5 9.4 21 225-245 109-129 (185)
29 1nfn_A Apolipoprotein E3; lipi 42.8 1.4E+02 0.0049 26.6 9.8 59 187-245 28-91 (191)
30 1vcs_A Vesicle transport throu 41.1 79 0.0027 25.4 7.0 39 202-240 49-94 (102)
31 2knc_A Integrin alpha-IIB; tra 40.8 27 0.00091 25.2 3.5 7 431-437 37-43 (54)
32 2l8s_A Integrin alpha-1; trans 40.2 42 0.0014 24.2 4.5 7 431-437 34-40 (54)
33 3trt_A Vimentin; cytoskeleton, 39.6 1.2E+02 0.004 22.7 9.5 63 183-246 9-75 (77)
34 2l8s_A Integrin alpha-1; trans 38.5 23 0.00079 25.5 2.9 29 412-440 9-37 (54)
35 3p8c_D Wiskott-aldrich syndrom 37.6 1.1E+02 0.0039 29.2 8.5 56 180-236 25-80 (279)
36 3ck6_A Putative membrane trans 36.2 92 0.0031 28.4 7.6 29 345-373 224-252 (252)
37 2knc_A Integrin alpha-IIB; tra 35.5 42 0.0014 24.2 3.8 29 412-440 12-40 (54)
38 2j69_A Bacterial dynamin-like 33.9 4.6E+02 0.016 27.9 16.7 29 220-248 366-394 (695)
39 3ghg_A Fibrinogen alpha chain; 32.9 3.7E+02 0.013 28.0 11.8 15 327-341 113-127 (562)
40 2qyw_A Vesicle transport throu 29.9 1.1E+02 0.0039 24.4 6.2 18 219-236 84-101 (102)
41 1t3j_A Mitofusin 1; coiled coi 27.5 2.4E+02 0.0081 22.6 7.5 30 173-202 33-62 (96)
42 1m1j_A Fibrinogen alpha subuni 24.3 3.1E+02 0.011 28.0 9.3 51 195-245 101-157 (491)
43 1deq_A Fibrinogen (alpha chain 23.6 4.3E+02 0.015 26.3 10.1 26 327-352 116-141 (390)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-53 Score=413.17 Aligned_cols=239 Identities=28% Similarity=0.427 Sum_probs=217.9
Q ss_pred cceEEEEecCCCeeEEE--echhhhhhhcCCCchhhhccCCCC-CCCceEeecCCeeEeeccceeeeEecCeEEEeecCC
Q 013541 49 LRSWIRVDVSGNSQIIE--VDKFSMMRRCDLPARDLRLLDPLF-VYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLD 125 (441)
Q Consensus 49 ~~~W~~id~~g~~~~~e--~~k~~l~~~~gL~~RDLr~ld~~~-~~ps~Il~R~~aIlvnle~i~aII~~d~vLlf~~~~ 125 (441)
..+|+.||..|++..++ ++|++|++++||+|||||++||.+ +++|+|++|++||+||++||||||++|+|++|++.+
T Consensus 16 ~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~~ 95 (261)
T 3rkg_A 16 FISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTN 95 (261)
T ss_dssp EEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCSC
T ss_pred eEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCCC
Confidence 56899999999999876 999999999999999999999985 455579999999999999999999999999999887
Q ss_pred chhh----hHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 126 SYVL----QYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEI 201 (441)
Q Consensus 126 ~~~~----~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~L~~~~~~Le~ 201 (441)
+.+. .|+.+++.|+..++ .+.+|||||||||||.++|+.|++++..++.
T Consensus 96 ~~~~~~~~~f~~~l~~~l~~~~---------------------------~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~ 148 (261)
T 3rkg_A 96 PSAAAKLSVLMYDLESKLSSTK---------------------------NNSQFYEHRALESIFINVMSALETDFKLHSQ 148 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSS---------------------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHhccCC---------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554 58899999987542 2359999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhhhhhhhcccccCccccccccCC
Q 013541 202 EAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSN 281 (441)
Q Consensus 202 ~~~~~Ld~L~~~i~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~m~Lt~k~~~~~~s~~~~~~~~~~~~~ 281 (441)
.+.++|++|++++++.+|++|+..|++|+.+.++|+.+|++|+++|+||+||+.||||+|..
T Consensus 149 ~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~------------------ 210 (261)
T 3rkg_A 149 ICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS------------------ 210 (261)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC------------------
Confidence 99999999999999999999999999999999999999999999999999999999997531
Q ss_pred CccccCCCCCCCCCCCCchhhhhhhhhhhhccccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013541 282 DIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFI 361 (441)
Q Consensus 282 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~rd~~d~~~~~~~~~~~~eelE~LLE~Y~~~id~~~~~~~~l~~~i~~~e~~i 361 (441)
..++++|+|||||+|++|+|++.++++.+++++++||++|
T Consensus 211 ----------------------------------------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i 250 (261)
T 3rkg_A 211 ----------------------------------------PKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIV 250 (261)
T ss_dssp ----------------------------------------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 013541 362 NIQLDNVRNQL 372 (441)
Q Consensus 362 ~i~L~~~~N~l 372 (441)
++.||++||++
T Consensus 251 ~i~LD~~RN~L 261 (261)
T 3rkg_A 251 NIILDANRNSL 261 (261)
T ss_dssp HHHHHHTC---
T ss_pred HHHHhhhccCC
Confidence 99999999985
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=100.00 E-value=5.2e-37 Score=312.44 Aligned_cols=276 Identities=19% Similarity=0.298 Sum_probs=188.5
Q ss_pred CCcceEEEEecCCCeeEEEechhhhhhhcCCCchhhhc-cCCCCCCCceEeecCCee--------------Eeeccceee
Q 013541 47 QGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRL-LDPLFVYPSTILGREKAI--------------VVNLEQIRC 111 (441)
Q Consensus 47 ~~~~~W~~id~~g~~~~~e~~k~~l~~~~gL~~RDLr~-ld~~~~~ps~Il~R~~aI--------------lvnle~i~a 111 (441)
++...|+.+++..+.+.+ ..|++.||||+..+++ +++. ..+++...++.+ .+..+++.+
T Consensus 68 ~~~~~Wi~l~~p~~~~e~----~~l~~~f~l~~l~ied~l~~~--~rpk~e~~~~~lfivl~~~~~~~~~~~~~~~~v~~ 141 (363)
T 2iub_A 68 SSTPTWINITGIHRTDVV----QRVGEFFGIHPLVLEDILNVH--QRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSL 141 (363)
T ss_dssp CSSCEEEEEECTTCHHHH----HHHHHHTTCCHHHHHHHHCCS--SCCEEEEETTEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCeEEEEeCCCCCHHHH----HHHHHHcCcChhHHHHHhCCC--CCCeEEEECCEEEEEEEeeeecccccccceEEEEE
Confidence 446889999998766655 6899999999999998 6544 334555444433 234568999
Q ss_pred eEecCeEEEeecCCchhhhHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHH
Q 013541 112 IITADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTF 191 (441)
Q Consensus 112 II~~d~vLlf~~~~~~~~~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~ 191 (441)
+++.|+|++|...+. +.++.+++|++.... ..+..+++++.|. +|+.++..
T Consensus 142 ~l~~~~liTv~~~~~---~~~~~v~~rl~~~~~--------------------~~~~~~~~~ll~~------lld~ivd~ 192 (363)
T 2iub_A 142 ILTKNCVLMFQEKIG---DVFDPVRERIRYNRG--------------------IIRKKRADYLLYS------LIDALVDD 192 (363)
T ss_dssp EEETTEEEEEESSSC---CSCHHHHHHHHTTCT--------------------TTTTSCHHHHHHH------HHHHHHHH
T ss_pred EEECCEEEEEEeCCC---chHHHHHHHHHhcCC--------------------ccccCCHHHHHHH------HHHHHHHH
Confidence 999999999998753 467888888865421 1112233333333 33333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhhhhhhhcc
Q 013541 192 LDSQAAELEIEAYPLLDELTSKIS----TLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEA 267 (441)
Q Consensus 192 L~~~~~~Le~~~~~~Ld~L~~~i~----~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~m~Lt~k~~~~~~ 267 (441)
+...++.+++. +++|++.+- ...+++++.+|+++..+++.++|.+++++.|.+.+.... +
T Consensus 193 y~~~l~~l~~~----id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~----~-------- 256 (363)
T 2iub_A 193 YFVLLEKIDDE----IDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLI----E-------- 256 (363)
T ss_dssp HHHHHHHHHHH----HHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSC----H--------
T ss_pred HHHHHHHHHHH----HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC----C--------
Confidence 33333322222 344444332 245899999999999999999999999999987653321 1
Q ss_pred cccCccccccccCCCccccCCCCCCCCCCCCchhhhhhhhhhhhccccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 013541 268 SFYGDQSVLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKL 347 (441)
Q Consensus 268 s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~rd~~d~~~~~~~~~~~~eelE~LLE~Y~~~id~~~~~~ 347 (441)
++...|++|++| ++.+..
T Consensus 257 -----------------------------------~~~~~~lrDv~d---------------------------~~~~~~ 274 (363)
T 2iub_A 257 -----------------------------------KETVPYFRDVYD---------------------------HTIQIA 274 (363)
T ss_dssp -----------------------------------HHHHHHHHHHHH---------------------------HHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHH---------------------------HHHHHH
Confidence 334456666654 455666
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-CCCCCCCchhHHHHHHHHHHHHHHH
Q 013541 348 TSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFA-IPFFDEPAAFKWVLIITGVCGIIIF 426 (441)
Q Consensus 348 ~~l~~~i~~~e~~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifGMN~~-~p~~~~~~~f~~v~~~~~~~~~~~~ 426 (441)
+.+..+.+.+..+.+.+++...|++|++|++||++|+||+|+|||||+|||||+ ||+++|+||||+++++|+++|++
T Consensus 275 e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~-- 352 (363)
T 2iub_A 275 DTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVI-- 352 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHH--
Confidence 666777788888888889999999999999999999999999999999999999 99999999999999999888876
Q ss_pred HHHHHHHHhcCcC
Q 013541 427 CAFVWFFKYRRLM 439 (441)
Q Consensus 427 ~~~~~~frrk~wl 439 (441)
+++||||||||
T Consensus 353 --~~~~Fkrk~Wl 363 (363)
T 2iub_A 353 --MVVYFKKKKWL 363 (363)
T ss_dssp --HHTTTTSCC--
T ss_pred --HHHHHHHcccC
Confidence 89999999997
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.5e-35 Score=299.02 Aligned_cols=276 Identities=19% Similarity=0.280 Sum_probs=198.8
Q ss_pred CCcceEEEEecCCCeeEEEechhhhhhhcCCCchhhhc-cCCCCCCCceEeecCCeeE-----------eeccceeeeEe
Q 013541 47 QGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRL-LDPLFVYPSTILGREKAIV-----------VNLEQIRCIIT 114 (441)
Q Consensus 47 ~~~~~W~~id~~g~~~~~e~~k~~l~~~~gL~~RDLr~-ld~~~~~ps~Il~R~~aIl-----------vnle~i~aII~ 114 (441)
..+.-|+.+.+-...+ + ..|++.||||+..+++ +|+. ..|++...++... +..+++.++++
T Consensus 47 d~~~vWIdl~~Pt~~E-~----~~l~~~~~l~~~~~ed~l~~~--~rpk~e~~~~~~~iv~~~~~~~~~~~~~~v~i~l~ 119 (339)
T 4ev6_A 47 DYRLIWIDCYDPKDEE-L----YKLSKKIGISVSDLQIGLDEQ--EIPRVEEDEDFYLIIYKAPLFEEDITTTSLGIYIK 119 (339)
T ss_dssp SCSCEEEEEESCCHHH-H----HHHHHHHTCCHHHHHHHHCTT--CCCEEEEETTEEEEECCCCCCTTTCCCCCCEEEEE
T ss_pred CCCEEEEEeCCCCHHH-H----HHHHHHHCcCHhHHHHhhCCc--cCCeEEEECCEEEEEEecCccCCCcceEEEEEEEE
Confidence 4467799998754433 3 5899999999999997 6654 3345655555432 24578999999
Q ss_pred cCeEEEeecCCchhhhHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 013541 115 ADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDS 194 (441)
Q Consensus 115 ~d~vLlf~~~~~~~~~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~L~~ 194 (441)
.+++++|...+. +.++.+++++...... .....+++++.|. +|+.++..+..
T Consensus 120 ~~~lITv~~~~~---~~~~~~~~~~~~~~~~-------------------~~~~~~~~~ll~~------lld~ivd~~~~ 171 (339)
T 4ev6_A 120 NNLLLTIHSDKI---KAIGRLHKLISTKKPR-------------------IVFERGIGFLLYH------ILNEITRSYSR 171 (339)
T ss_dssp TTEEEEEESSCC---HHHHHHHHHSSSSSSC-------------------CCCCSCHHHHHHH------HHHHHHHHHHH
T ss_pred CCeeEEeecCCc---chhHHHHHHHHcCCCc-------------------cccccCHHHHHHH------HHHHHHHHHHH
Confidence 999999987654 4678888887654210 0012333333333 33333333333
Q ss_pred HHHHHHHHHHHHHHHHhhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhhhhhhhccccc
Q 013541 195 QAAELEIEAYPLLDELTSKI----STLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFY 270 (441)
Q Consensus 195 ~~~~Le~~~~~~Ld~L~~~i----~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~m~Lt~k~~~~~~s~~ 270 (441)
.++.+++. ++++++++ +...++++..+|+++..+++.+.|.++++..+.+.+.... +
T Consensus 172 ~l~~l~~~----i~~lE~~l~~~~~~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~~----~----------- 232 (339)
T 4ev6_A 172 ILMNLEDE----LEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPIT----T----------- 232 (339)
T ss_dssp HHHHHHHH----HHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTB----C-----------
T ss_pred HHHHHHHH----HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcccccc----c-----------
Confidence 33322222 34444433 2346899999999999999999999999999987653321 0
Q ss_pred CccccccccCCCccccCCCCCCCCCCCCchhhhhhhhhhhhccccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 271 GDQSVLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSL 350 (441)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~rd~~d~~~~~~~~~~~~eelE~LLE~Y~~~id~~~~~~~~l 350 (441)
++...|++|.++ ++.+..+.+
T Consensus 233 --------------------------------~~~~~~l~dv~~---------------------------~~~~l~e~~ 253 (339)
T 4ev6_A 233 --------------------------------KEDRENFEDLYY---------------------------DTLQLIDMS 253 (339)
T ss_dssp --------------------------------HHHHHHHHHHHH---------------------------HHHHHHHHH
T ss_pred --------------------------------hHHHHHHHHHHH---------------------------HHHHHHHHH
Confidence 333345555443 444555666
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-CCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 013541 351 KEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFA-IPFFDEPAAFKWVLIITGVCGIIIFCAF 429 (441)
Q Consensus 351 ~~~i~~~e~~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifGMN~~-~p~~~~~~~f~~v~~~~~~~~~~~~~~~ 429 (441)
..+.+.+..+.+.+++...|++|++|++||++|++|+|+|||||+|||||+ ||+.+|+||||+++++|+++|++ +
T Consensus 254 ~~~~e~l~~l~d~~~s~is~~~N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~----~ 329 (339)
T 4ev6_A 254 ATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMI----F 329 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHH----H
Confidence 677777788888888888888999999999999999999999999999999 99999999999999999888776 8
Q ss_pred HHHHHhcCcC
Q 013541 430 VWFFKYRRLM 439 (441)
Q Consensus 430 ~~~frrk~wl 439 (441)
++||||||||
T Consensus 330 ~~~fkrk~WL 339 (339)
T 4ev6_A 330 VYIFRRSGWI 339 (339)
T ss_dssp HHHHHTTTCC
T ss_pred HHHHHHcCCC
Confidence 9999999997
No 4
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=99.70 E-value=5e-16 Score=152.13 Aligned_cols=212 Identities=14% Similarity=0.177 Sum_probs=148.3
Q ss_pred CCCcceEEEEecCCCeeEEEechhhhhhhcCCCchhhhc-cCCCCCCCceEeecCCeeE-----------eeccceeeeE
Q 013541 46 GQGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRL-LDPLFVYPSTILGREKAIV-----------VNLEQIRCII 113 (441)
Q Consensus 46 ~~~~~~W~~id~~g~~~~~e~~k~~l~~~~gL~~RDLr~-ld~~~~~ps~Il~R~~aIl-----------vnle~i~aII 113 (441)
...+..|+.+.+-...+ + ..|++.|||||..+++ +++. ..|++...++.+. +..+++.+++
T Consensus 46 ~d~~~vWIdl~~Pt~eE-l----~~l~~~f~lh~l~leD~l~~~--~rpKie~~~d~~fivl~~~~~~~~~~t~~v~i~l 118 (280)
T 4egw_A 46 EDYRLIWIDCYDPKDEE-L----YKLSKKIGISVSDLQIGLDEQ--EIPRVEEDEDFYLIIYKAPLFEEDITTTSLGIYI 118 (280)
T ss_dssp TSSSCEEEEEESCCHHH-H----HHHHHHHTCCHHHHHHHTCTT--CCCEEECCSSSEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCCeEEEEEeCCCCHHH-H----HHHHHHHCcCHHHHHHHhCcc--cCceEEEECCEEEEEEEeccccccceeeeEEEEE
Confidence 34567899998765543 3 5899999999999997 6654 3445655554432 3467899999
Q ss_pred ecCeEEEeecCCchhhhHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 013541 114 TADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLD 193 (441)
Q Consensus 114 ~~d~vLlf~~~~~~~~~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~L~ 193 (441)
+.++|++|...+. +.++.+++|+...... .....+++++.|. .|+
T Consensus 119 ~~~~lITv~~~~~---~~~~~v~~~l~~~~~~-------------------~~~~~g~~~ll~~-------------lld 163 (280)
T 4egw_A 119 KNNLLLTIHSDKI---KAIGRLHKLISTKKPR-------------------IVFERGIGFLLYH-------------ILN 163 (280)
T ss_dssp ETTEEEEEESSCC---HHHHHHHHHHHHSCCS-------------------SSCTTTTTHHHHH-------------HHH
T ss_pred ECCEEEEEecCCc---chHHHHHHHHHhcCcc-------------------cccccCHHHHHHH-------------HHH
Confidence 9999999998754 5789999998765321 1123567777777 555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhhhh
Q 013541 194 SQAAELEIEAYPLLDELTSKIS-----------TLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKK 262 (441)
Q Consensus 194 ~~~~~Le~~~~~~Ld~L~~~i~-----------~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~m~Lt~k~ 262 (441)
..++ .|+++++.++++++ ...+.+++.+|++|..|++.++|.|+++..|.+.+.... +
T Consensus 164 ~ivd----~y~~~l~~i~~~id~lE~~l~~~~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~----~--- 232 (280)
T 4egw_A 164 EITR----SYSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPIT----T--- 232 (280)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSC----C---
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccC----C---
Confidence 5555 55555555554433 236899999999999999999999999999987664331 0
Q ss_pred hhhcccccCccccccccCCCccccCCCCCCCCCCCCchhhhhhhhhhhhccccccCCCCCcccHHHHHHHHHHHHHHHHH
Q 013541 263 SRMEASFYGDQSVLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDS 342 (441)
Q Consensus 263 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~rd~~d~~~~~~~~~~~~eelE~LLE~Y~~~id~ 342 (441)
++...|++|++| +
T Consensus 233 ----------------------------------------~~~~~~l~Dv~d---------------------------h 245 (280)
T 4egw_A 233 ----------------------------------------KEDRENFEDLYY---------------------------D 245 (280)
T ss_dssp ----------------------------------------HHHHHHHHHHHH---------------------------H
T ss_pred ----------------------------------------HHHHHHHHHHHH---------------------------H
Confidence 445567777665 5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013541 343 TLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFEL 377 (441)
Q Consensus 343 ~~~~~~~l~~~i~~~e~~i~i~L~~~~N~l~~~~l 377 (441)
+.+.++.+..+.+.+..+++.+++..+|++|++||
T Consensus 246 ~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~iMK 280 (280)
T 4egw_A 246 TLQLIDMSATYREVLTSMMDITLSLENIKMNQIMK 280 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 66777778889999999999999999999999875
No 5
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=99.51 E-value=5.4e-13 Score=128.21 Aligned_cols=200 Identities=11% Similarity=0.149 Sum_probs=135.8
Q ss_pred eEEEEecCCCeeEEEechhhhhhhcCCCchhhhc-cCCCCCCCceEeecCC-eeE--ee------------ccceeeeEe
Q 013541 51 SWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRL-LDPLFVYPSTILGREK-AIV--VN------------LEQIRCIIT 114 (441)
Q Consensus 51 ~W~~id~~g~~~~~e~~k~~l~~~~gL~~RDLr~-ld~~~~~ps~Il~R~~-aIl--vn------------le~i~aII~ 114 (441)
.|+.+++.. .+.+ ..|.+. |||+..+++ ++.. +.|++...++ ++. ++ ...+.++++
T Consensus 32 ~Wi~l~~p~-~~e~----~~l~~~-~l~~l~~ed~l~~~--~rpk~e~~~d~~lfivl~~~~~~~~~~~~~~~~l~i~l~ 103 (252)
T 3ck6_A 32 HWYHCERLH-PDIR----GWLEDN-HVPRATVDHLLADE--SRPSFHPLDDDNFMLILRGINMNENASPEDMLSIRILYF 103 (252)
T ss_dssp EEEEEETTC-TTHH----HHHHHT-TCCHHHHHHHHCSS--CCCEEEECSTTCEEEEEEECCCSTTCCTTSCEEEEEEEE
T ss_pred EEEEecCCC-HHHH----HHHHHc-CCCHHHHHHHhCCC--CCCceEEeCCceEEEEEecCccCCCCCcccEEEEEEEEe
Confidence 999999865 3444 589999 999999998 5443 3457777776 552 22 233677999
Q ss_pred cCeEEEeecCCchhhhHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 013541 115 ADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDS 194 (441)
Q Consensus 115 ~d~vLlf~~~~~~~~~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~L~~ 194 (441)
.++|++|...+. +.++.+++|+..+.. ..+++++.|. .++.
T Consensus 104 ~~~lITvr~~~~---~~~~~v~~~l~~~~~-----------------------~~~~~~ll~~-------------lld~ 144 (252)
T 3ck6_A 104 QGALISTRKIPS---RAIMEIRQALAEHKG-----------------------PKSLASLLNQ-------------IIEG 144 (252)
T ss_dssp TTEEEEEESSCC---HHHHHHHHHHHTTCS-----------------------CSSHHHHHHH-------------HHHH
T ss_pred CCEEEEEeCCCc---chHHHHHHHHHhCCC-----------------------CCCHHHHHHH-------------HHHH
Confidence 999999998754 578899999854321 1123333333 4444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhhhhhhhcccc
Q 013541 195 QAAELEIEAYPLLDELTSKIST-----LNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASF 269 (441)
Q Consensus 195 ~~~~Le~~~~~~Ld~L~~~i~~-----~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~m~Lt~k~~~~~~s~ 269 (441)
.++ .|+++++.++++++. ..+.+|+.+|+++..+++.++|.|+++..|.+.+..+ .
T Consensus 145 ivd----~y~~~l~~l~~~id~lE~~~~~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~~-----~---------- 205 (252)
T 3ck6_A 145 LNG----KIDLYLDTIEETLNEFDVNDESTYNHIAAQKALISIKRFIRPQQYAIRDLIESESEL-----V---------- 205 (252)
T ss_dssp HHH----HHHHHHHHHHHHHHTCCTTCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-----H----------
T ss_pred HHH----HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----C----------
Confidence 444 566666665554432 2467899999999999999999999999999876442 1
Q ss_pred cCccccccccCCCccccCCCCCCCCCCCCchhhhhhhhhhhhccccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 270 YGDQSVLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTS 349 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~rd~~d~~~~~~~~~~~~eelE~LLE~Y~~~id~~~~~~~~ 349 (441)
++...|++|.+| ++.+..+.
T Consensus 206 ---------------------------------~~~~~~~rdv~d---------------------------~~~~~~e~ 225 (252)
T 3ck6_A 206 ---------------------------------TSRPHQYRFAHN---------------------------NITRINET 225 (252)
T ss_dssp ---------------------------------HTSHHHHHHHHH---------------------------HHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHH---------------------------HHHHHHHH
Confidence 334467777766 45555666
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013541 350 LKEYIDDTEDFINIQLDNVRNQLIQFE 376 (441)
Q Consensus 350 l~~~i~~~e~~i~i~L~~~~N~l~~~~ 376 (441)
+..+++.+..+.+.+++...|++|++|
T Consensus 226 i~~~re~~~~l~d~~~s~~s~~~N~~m 252 (252)
T 3ck6_A 226 IEFYLGEVALFQDEIKHNRDEKTNKNS 252 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 667777777888888888888888764
No 6
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=99.48 E-value=9e-13 Score=127.41 Aligned_cols=163 Identities=10% Similarity=0.056 Sum_probs=107.0
Q ss_pred CCcceEEEEecCCCeeEEEechhhhhhhcCCCchhhhc-cCCCCCCCceEeecCCeeE--------------eeccceee
Q 013541 47 QGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRL-LDPLFVYPSTILGREKAIV--------------VNLEQIRC 111 (441)
Q Consensus 47 ~~~~~W~~id~~g~~~~~e~~k~~l~~~~gL~~RDLr~-ld~~~~~ps~Il~R~~aIl--------------vnle~i~a 111 (441)
++...|+.+++... +.+ ..|.+.||||+..+++ +++. ..|++...++.+. +..+++++
T Consensus 39 ~~~~~Wi~l~~p~~-~e~----~~l~~~~~l~~l~~ed~~~~~--~rpk~e~~~~~~fivl~~~~~~~~~~~~~~~~v~~ 111 (264)
T 3nvo_A 39 SQHPCWLHLNYTHP-DSA----RWLASTPLLPNNVRDALAGES--SRPRVSRMGEGTLITLRCINGSTDERPDQLVAMRL 111 (264)
T ss_dssp TTSCEEEEEETTSH-HHH----HHHHHCTTSCTTTHHHHTTCC--CSCEEEEETTEEEEEEECC----------CCEEEE
T ss_pred CCCCEEEEeCCCCH-HHH----HHHHhccCCCHHHHHHHhCCC--CCCceEEECCEEEEEEEecccCCCCCCcceEEEEE
Confidence 56789999998443 434 6899999999999997 5443 3445655555432 24678999
Q ss_pred eEecCeEEEeecCCchhhhHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHH
Q 013541 112 IITADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTF 191 (441)
Q Consensus 112 II~~d~vLlf~~~~~~~~~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~ 191 (441)
+++.++|++|...+. +.++.+++|+..... ..+++++.|. +|+.++..
T Consensus 112 ~l~~~~lITv~~~~~---~~~~~v~~rl~~~~~-----------------------~~~~~~ll~~------lld~ivd~ 159 (264)
T 3nvo_A 112 YMDERFIVSTRQRKV---LALDDVVSDLQEGTG-----------------------PVDCGGWLVD------VCDALTDH 159 (264)
T ss_dssp EECSSEEEEEESSCC---HHHHHHHHHHHTTCS-----------------------CSSHHHHHHH------HHHHHHHH
T ss_pred EEeCCEEEEEecCCc---CcHHHHHHHHHhCCC-----------------------CCCHHHHHHH------HHHHHHHH
Confidence 999999999998643 578999999865421 0233334333 22222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Q 013541 192 LDSQAAELEIEAYPLLDELTSKI---STLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGD 252 (441)
Q Consensus 192 L~~~~~~Le~~~~~~Ld~L~~~i---~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~d 252 (441)
+-..++.+++. +++|++.+ ....+.+|+.+|++++.|++.++|.++++.+|.+.+..
T Consensus 160 y~~~l~~l~~~----id~lE~~l~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~ 219 (264)
T 3nvo_A 160 ASEFIEELHDK----IIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLP 219 (264)
T ss_dssp HHHHHHHHHHH----HHHHTTC----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHHH----HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCCc
Confidence 22222222112 33333322 12357899999999999999999999999999887643
No 7
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=99.31 E-value=7e-12 Score=121.47 Aligned_cols=158 Identities=18% Similarity=0.289 Sum_probs=108.2
Q ss_pred CCcceEEEEecCCCeeEEEechhhhhhhcCCCchhhhc-cCCCCCCCceEeecCCee--E------------eeccceee
Q 013541 47 QGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRL-LDPLFVYPSTILGREKAI--V------------VNLEQIRC 111 (441)
Q Consensus 47 ~~~~~W~~id~~g~~~~~e~~k~~l~~~~gL~~RDLr~-ld~~~~~ps~Il~R~~aI--l------------vnle~i~a 111 (441)
++...|+.+++.++.+.+ ..|++.||||+..+++ +++. .++++...++++ + +..+++.+
T Consensus 59 ~~~~~Wi~l~~p~~~~e~----~~l~~~f~l~~l~~ed~l~~~--~rpk~e~~~d~lfivl~~~~~~~~~~~~~~~~v~~ 132 (269)
T 2bbh_A 59 SSTPTWINITGIHRTDVV----QRVGEFFGTHPLVLEDILNVH--QRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSL 132 (269)
T ss_dssp CSSCEEEEEECTTCHHHH----HHHHHHHTCCHHHHHHHHCTT--CCCEEEECSSEEEEEEEEEECCC--CCCEEEEEEE
T ss_pred CCCeEEEEecCCCCHHHH----HHHHHHcCCCHhHHHHHhCcC--CCceEEEECCEEEEEEEeeeecCCcCceeEEEEEE
Confidence 346789999998666666 6899999999999998 5544 334555444443 1 24567899
Q ss_pred eEecCeEEEeecCCchhhhHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHH
Q 013541 112 IITADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTF 191 (441)
Q Consensus 112 II~~d~vLlf~~~~~~~~~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~ 191 (441)
+++.++|++|...+. +.++.+++|+..... .....+++++.|. .
T Consensus 133 ~l~~~~lITv~~~~~---~~~~~v~~rl~~~~~--------------------~~~~~~~~~ll~~-------------l 176 (269)
T 2bbh_A 133 ILTKNCVLMFQEKIG---DVFDPVRERIRYNRG--------------------IIRKKRADYLLYS-------------L 176 (269)
T ss_dssp EEETTEEEEEESSSC---CSCHHHHHHHHTTCT--------------------TGGGSCHHHHHHH-------------H
T ss_pred EEECCEEEEEECCCC---CcHHHHHHHHHhcCC--------------------chhhCCHHHHHHH-------------H
Confidence 999999999997653 456788888865421 1112344444444 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013541 192 LDSQAAELEIEAYPLLDELTSKIS-----------TLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDD 250 (441)
Q Consensus 192 L~~~~~~Le~~~~~~Ld~L~~~i~-----------~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD 250 (441)
|+..++ .|+++++.++++++ ...+.+|+.+|+++..|++.++|.++++..|.+.+
T Consensus 177 ld~ivd----~y~~~l~~i~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 177 IDALVD----DYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333 34444443333322 23589999999999999999999999999998754
No 8
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=99.08 E-value=1.4e-10 Score=112.31 Aligned_cols=165 Identities=15% Similarity=0.264 Sum_probs=110.1
Q ss_pred CCcceEEEEecCCCeeEEEechhhhhhhcCCCchhhhc-cCCCCCCCceEeecCCee--E---------eeccceeeeEe
Q 013541 47 QGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRL-LDPLFVYPSTILGREKAI--V---------VNLEQIRCIIT 114 (441)
Q Consensus 47 ~~~~~W~~id~~g~~~~~e~~k~~l~~~~gL~~RDLr~-ld~~~~~ps~Il~R~~aI--l---------vnle~i~aII~ 114 (441)
++...|+.+++.++.+.+ ..|++.||||+..+++ +++. ..+++...++++ + +..+++.++++
T Consensus 64 ~~~~~Wi~l~~p~~~~e~----~~l~~~f~l~~l~~ed~l~~~--~rpk~e~~~d~lfivl~~~~~~~~~~~~~v~~~l~ 137 (266)
T 2hn1_A 64 LNKKLWIDVVGVHDESLI----AKICEFLGIHPLAAEDILNTA--QRVKIEDYDDHLFLVLKILLYNETLEIDQLSLVLK 137 (266)
T ss_dssp TTSEEEEEECCCCCHHHH----HHHHHTTTCCHHHHHHHHBTT--CCSEEEECSSEEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred CCCeEEEEeCCCCCHHHH----HHHHHHcCCCHhHHHHHhCCC--CCCeEEEECCEEEEEEEeccccCccceEEEEEEEE
Confidence 456889999998666655 6899999999999998 5554 344666555544 1 24568999999
Q ss_pred cCeEEEeecCCchhhhHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 013541 115 ADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDS 194 (441)
Q Consensus 115 ~d~vLlf~~~~~~~~~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~L~~ 194 (441)
.|+|++|...+. +.++.+++|+.... .....+++++.|. .|+.+.+. +-.
T Consensus 138 ~~~lITv~~~~~---~~~~~v~~rl~~~~---------------------~~~~~~~~~ll~~--lld~ivd~----y~~ 187 (266)
T 2hn1_A 138 KNLVATFEEREY---WILDSIRSRLKSGG---------------------RMRKLAGDYLAYT--ILDAVVDS----YFE 187 (266)
T ss_dssp TTEEEEEESSSS---CSTHHHHHHHHSSS---------------------HHHHSCHHHHHHH--HHHHHHHH----HHH
T ss_pred CCEEEEEEcCCC---ChHHHHHHHHHhCC---------------------chhhcCHHHHHHH--HHHHHHHH----HHH
Confidence 999999997653 35688888886431 0111233344443 33333333 323
Q ss_pred HHHHHHHHHHHHHHHHhhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Q 013541 195 QAAELEIEAYPLLDELTSKI----STLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGD 252 (441)
Q Consensus 195 ~~~~Le~~~~~~Ld~L~~~i----~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~d 252 (441)
.++.++.. +++|++.+ . ..+++|..+|+++..|++.++|.++++..|.+.+..
T Consensus 188 ~l~~i~~~----id~lE~~l~~~~~-~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~ 244 (266)
T 2hn1_A 188 ALLKISDE----IEVLEDEVVSGDS-TLIGKIHSLKREILAFRNAVWPLRDVLSFFTRVEHE 244 (266)
T ss_dssp HHHHHHHH----HHHHHHHHHTTTC-CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCCT
T ss_pred HHHHHHHH----HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 33322222 23333322 2 457889999999999999999999999999987643
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=91.93 E-value=1.6 Score=42.93 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCc--hhHHHHH
Q 013541 340 IDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLI-QFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPA--AFKWVLI 416 (441)
Q Consensus 340 id~~~~~~~~l~~~i~~~e~~i~i~L~~~~N~l~-~~~l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~--~f~~v~~ 416 (441)
+..+...+..+.+..+...+.++..++...+.+. +.+.++-++|++-+++...+=+-|. +.|.+..-|. .-|..++
T Consensus 239 l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk~LTiit~IflP~T~IaGi-yGMNf~~mPel~~~~gy~~ 317 (339)
T 4ev6_A 239 FEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIFAVPMWITGI-YGMNFSYLPLANNPQGFWL 317 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHH-TTCCCSCCTTSSCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCcCCCCCCccCchHHHH
Confidence 3568888888888888888888888888777764 8888888888888888888888886 6788876664 3444555
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc
Q 013541 417 ITGVCGIIIFCAFVWFFKYRRL 438 (441)
Q Consensus 417 ~~~~~~~~~~~~~~~~frrk~w 438 (441)
+++++++ +.++.+..-|+
T Consensus 318 ~l~~m~~----~~~~~~~~fkr 335 (339)
T 4ev6_A 318 VMALMVV----IIMIFVYIFRR 335 (339)
T ss_dssp HHHHHHH----HHHHHHHHHHT
T ss_pred HHHHHHH----HHHHHHHHHHH
Confidence 4443333 37776665444
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=86.08 E-value=1.7 Score=43.29 Aligned_cols=94 Identities=14% Similarity=0.164 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCch--hHHHHH
Q 013541 340 IDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQL-IQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAA--FKWVLI 416 (441)
Q Consensus 340 id~~~~~~~~l~~~i~~~e~~i~i~L~~~~N~l-~~~~l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~~--f~~v~~ 416 (441)
+..+...+..+.+.++...+.++..++...+.+ ++.+.++-++|++-+++...+=+-|. +.|.+..-|.. .|..++
T Consensus 263 lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGi-yGMNf~~mPel~~~~Gy~~ 341 (363)
T 2iub_A 263 FRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGI-YGMNFEYMPELRWKWGYPV 341 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC--------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccCCCCCcccCcHHHHH
Confidence 346888888888888888999988888777765 68999999999999999999999997 77888766643 233333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc
Q 013541 417 ITGVCGIIIFCAFVWFFKYRRL 438 (441)
Q Consensus 417 ~~~~~~~~~~~~~~~~frrk~w 438 (441)
++++ ++++.+..+..-|+
T Consensus 342 ~l~~----m~~i~~~~~~~Fkr 359 (363)
T 2iub_A 342 VLAV----MGVIAVIMVVYFKK 359 (363)
T ss_dssp HHHH----HHHHHHHHHTTTTS
T ss_pred HHHH----HHHHHHHHHHHHHH
Confidence 3332 22346666655444
No 11
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=75.46 E-value=8.3 Score=34.94 Aligned_cols=74 Identities=19% Similarity=0.371 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013541 175 PFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVR-RLKSRLVALTRRVQKVRDEIEQLMDDD 250 (441)
Q Consensus 175 PFE~raLE~~L~~~~~~L~~~~~~Le~~~~~~Ld~L~~~i~~~~Le~l~-~lK~~L~~l~~~v~~vre~l~~LLddD 250 (441)
||. +=+...+......|...++.+.....|..+++..++.. .++.++ .+++.+..++.++.|..+.|..-+...
T Consensus 55 ~l~-~el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~-~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~ 129 (191)
T 1nfn_A 55 QVT-QELRALMDETMKELKAYKSELEEQLTPVAEETRARLSK-ELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQS 129 (191)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHTTC----------CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 443 45556666666666666666666667776666666543 234444 568888899999999998888776544
No 12
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=71.75 E-value=4.9 Score=27.85 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=5.4
Q ss_pred HHHHHHHHhcC
Q 013541 427 CAFVWFFKYRR 437 (441)
Q Consensus 427 ~~~~~~frrk~ 437 (441)
++.++|+|||+
T Consensus 29 ~~~~~~~RRr~ 39 (44)
T 2ks1_B 29 LGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHhhhhH
Confidence 33455555554
No 13
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=69.84 E-value=9.3 Score=22.82 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 222 VRRLKSRLVALTRRVQKVRDEIEQL 246 (441)
Q Consensus 222 l~~lK~~L~~l~~~v~~vre~l~~L 246 (441)
++++|.+.-+++..|+.+++++.++
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 5788999999999999999888765
No 14
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=68.65 E-value=26 Score=26.85 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 186 EAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDE 242 (441)
Q Consensus 186 ~~~~~~L~~~~~~Le~~~~~~Ld~L~~~i~~~~Le~l~~lK~~L~~l~~~v~~vre~ 242 (441)
++-+..|+.-++.|...+..+|.+.++- =..||+++..|+..+.++++.
T Consensus 6 EEKv~~LE~sld~LQTrfARLLaEy~ss--------Q~KLKqRit~LE~~~~~~~~~ 54 (74)
T 3swf_A 6 EEKVTRMESSVDLLQTRFARILAEYESM--------QQKLKQRLTKVEKFLKPLIDT 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccCCC
Confidence 4455566666666666666666555432 246899999999999885543
No 15
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=61.82 E-value=1.1e+02 Score=29.07 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013541 227 SRLVALTRRVQKVRDEIEQLM 247 (441)
Q Consensus 227 ~~L~~l~~~v~~vre~l~~LL 247 (441)
+.+..++.++.|..+.+...+
T Consensus 44 ~~le~lr~~L~Py~~el~~~~ 64 (273)
T 3s84_A 44 DNLRELQQRLEPYADQLRTQV 64 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=58.70 E-value=84 Score=32.73 Aligned_cols=42 Identities=14% Similarity=0.068 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 013541 326 VEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDN 367 (441)
Q Consensus 326 ~eelE~LLE~Y~~~id~~~~~~~~l~~~i~~~e~~i~i~L~~ 367 (441)
++.|+.-+..-++++..+.+.|+.+...|..+|--|++++..
T Consensus 119 IqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445554455555677777778888888888888888887744
No 17
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=51.70 E-value=26 Score=24.16 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhcC
Q 013541 421 CGIIIFCAFVWFFKYRR 437 (441)
Q Consensus 421 ~~~~~~~~~~~~frrk~ 437 (441)
+.+++.++..+|+|||+
T Consensus 23 l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheehhh
Confidence 34444455677788876
No 18
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=51.59 E-value=11 Score=32.11 Aligned_cols=32 Identities=16% Similarity=0.407 Sum_probs=26.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013541 406 DEPAAFKWVLIITGVCGIIIFCAFVWFFKYRR 437 (441)
Q Consensus 406 ~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk~ 437 (441)
+..++|.+++++|+..+++++.+|+-|.|-||
T Consensus 48 ~~~~~ylYIL~vmgffgff~~GImLsYiRSKk 79 (138)
T 2k21_A 48 DGKLEALYVLMVLGFFGFFTLGIMLSYIRSKK 79 (138)
T ss_dssp TCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeehHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 45567888888888888888889999999886
No 19
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=50.01 E-value=17 Score=24.26 Aligned_cols=11 Identities=18% Similarity=0.165 Sum_probs=5.1
Q ss_pred HHHHHHHHhcC
Q 013541 427 CAFVWFFKYRR 437 (441)
Q Consensus 427 ~~~~~~frrk~ 437 (441)
+++.+||+|||
T Consensus 28 ~~l~~~~~rrr 38 (38)
T 2k1k_A 28 LGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHeecC
Confidence 33444555543
No 20
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=49.89 E-value=37 Score=23.13 Aligned_cols=28 Identities=11% Similarity=0.327 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q 013541 412 KWVLIITGVCGIIIFCAFVWFFKYRRLM 439 (441)
Q Consensus 412 ~~v~~~~~~~~~~~~~~~~~~frrk~wl 439 (441)
+|++++.+++++++...+.+.++|-++|
T Consensus 10 ~wiIi~s~l~GLllL~li~~~LwK~GFF 37 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAMWKVGFF 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 4444444444444444444444444444
No 21
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=48.62 E-value=31 Score=23.77 Aligned_cols=11 Identities=9% Similarity=0.371 Sum_probs=5.4
Q ss_pred HHHHHHHHhcC
Q 013541 427 CAFVWFFKYRR 437 (441)
Q Consensus 427 ~~~~~~frrk~ 437 (441)
++.++|+|||+
T Consensus 28 ~~~~~~~RRRr 38 (44)
T 2l2t_A 28 LTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHhhhhh
Confidence 33455555554
No 22
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=48.02 E-value=20 Score=34.94 Aligned_cols=32 Identities=16% Similarity=0.381 Sum_probs=25.3
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 013541 220 ERVR-RLKSRLVALTRRVQKVRDEIEQLMDDDG 251 (441)
Q Consensus 220 e~l~-~lK~~L~~l~~~v~~vre~l~~LLddD~ 251 (441)
+.++ .+...+..++.++.|.++.+...+..+-
T Consensus 106 ~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~ 138 (307)
T 2l7b_A 106 QAAQARLGADMEDVCGRLVQYRGEVQAMLGQST 138 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 5678889999999999999998887654
No 23
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=47.67 E-value=19 Score=23.90 Aligned_cols=7 Identities=29% Similarity=0.562 Sum_probs=3.0
Q ss_pred HHHHHhc
Q 013541 430 VWFFKYR 436 (441)
Q Consensus 430 ~~~frrk 436 (441)
+++++||
T Consensus 33 ~~~~~rR 39 (41)
T 2k9y_A 33 GFFIHRR 39 (41)
T ss_dssp HHSSSSS
T ss_pred heeEeee
Confidence 3444443
No 24
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=46.93 E-value=68 Score=22.28 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 013541 186 EAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRR 235 (441)
Q Consensus 186 ~~~~~~L~~~~~~Le~~~~~~Ld~L~~~i~~~~Le~l~~lK~~L~~l~~~ 235 (441)
++-+..|+.-++.|...+..+|.+.++- =..+|+++..++..
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ss--------q~KlKqRit~lE~~ 45 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNAT--------QMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhc
Confidence 4445566666666666665555555432 14577777777665
No 25
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=46.33 E-value=19 Score=22.25 Aligned_cols=24 Identities=17% Similarity=0.509 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 223 RRLKSRLVALTRRVQKVRDEIEQL 246 (441)
Q Consensus 223 ~~lK~~L~~l~~~v~~vre~l~~L 246 (441)
..+|++|.+++.+|..+-+-|+++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999888887765
No 26
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=45.28 E-value=1.1e+02 Score=24.34 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHH
Q 013541 220 ERVRRLKSRLVA-LTRRVQKV 239 (441)
Q Consensus 220 e~l~~lK~~L~~-l~~~v~~v 239 (441)
.+|+.+|+.|.. +++.++.+
T Consensus 72 ~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 72 AKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455666655555 55554444
No 27
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=45.18 E-value=60 Score=25.92 Aligned_cols=70 Identities=20% Similarity=0.371 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCch
Q 013541 182 EVALEAACTFLDSQAAELEIEAYPLLDELTS-KISTLNL-ERVRRLKSR----LVALTRRVQKVRDEIEQLMDDDGD 252 (441)
Q Consensus 182 E~~L~~~~~~L~~~~~~Le~~~~~~Ld~L~~-~i~~~~L-e~l~~lK~~----L~~l~~~v~~vre~l~~LLddD~d 252 (441)
|.-|..+...++..+..+...+ +.++.-.- -+..+++ ..+..+|++ +..+..++..+.+.|++.|.++..
T Consensus 25 ee~l~~aA~~vd~~~~~i~~~~-~~~~~~r~~vmaALnladel~~~~~~~~~~~~~~~~~i~~L~~~le~aL~~~~~ 100 (104)
T 1t3u_A 25 RANLESAARYLDGKMREIRSSG-KVIGADRVAVMAALNITHDLLHRKERLDQESSSTRERVRELLDRVDRALANPAD 100 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT-CSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4567777888888888665553 22111100 0111222 455666665 778888999999999988876543
No 28
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=42.83 E-value=1.3e+02 Score=26.53 Aligned_cols=21 Identities=14% Similarity=0.408 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013541 225 LKSRLVALTRRVQKVRDEIEQ 245 (441)
Q Consensus 225 lK~~L~~l~~~v~~vre~l~~ 245 (441)
+.+.+-.++.++.|+-+.+.+
T Consensus 109 ~~~~~e~lr~~l~Py~~el~~ 129 (185)
T 3r2p_A 109 WQEEMELYRQKVEPLRAELQE 129 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 345555566666665555543
No 29
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=42.77 E-value=1.4e+02 Score=26.58 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 187 AACTFLDSQAAELEIEAYPLLDEL-----TSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQ 245 (441)
Q Consensus 187 ~~~~~L~~~~~~Le~~~~~~Ld~L-----~~~i~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~ 245 (441)
.+...+..-++.+...+..+++.| +..+.....+.+-.++..+..++..+.|+.+.+..
T Consensus 28 ~v~~~~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~ 91 (191)
T 1nfn_A 28 LALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRA 91 (191)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 334444444444444445555544 33333333444555555566777777777665554
No 30
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=41.10 E-value=79 Score=25.36 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhhh-------hhHHHHHHHHHHHHHHHHHHHHHH
Q 013541 202 EAYPLLDELTSKIST-------LNLERVRRLKSRLVALTRRVQKVR 240 (441)
Q Consensus 202 ~~~~~Ld~L~~~i~~-------~~Le~l~~lK~~L~~l~~~v~~vr 240 (441)
++..+|+.++-.+.. .-..+|+.+|+.|..+++.++.++
T Consensus 49 EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 49 EARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556654432221 235678888888877777665543
No 31
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=40.81 E-value=27 Score=25.20 Aligned_cols=7 Identities=57% Similarity=0.780 Sum_probs=4.2
Q ss_pred HHHHhcC
Q 013541 431 WFFKYRR 437 (441)
Q Consensus 431 ~~frrk~ 437 (441)
.||||++
T Consensus 37 GFFkR~~ 43 (54)
T 2knc_A 37 GFFKRNR 43 (54)
T ss_dssp HHTTTTC
T ss_pred CcccCCC
Confidence 4666665
No 32
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=40.19 E-value=42 Score=24.15 Aligned_cols=7 Identities=43% Similarity=0.396 Sum_probs=4.4
Q ss_pred HHHHhcC
Q 013541 431 WFFKYRR 437 (441)
Q Consensus 431 ~~frrk~ 437 (441)
.||||++
T Consensus 34 GFFKR~~ 40 (54)
T 2l8s_A 34 GFFKRPL 40 (54)
T ss_dssp HHTTSCC
T ss_pred CcccCCC
Confidence 4677665
No 33
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=39.61 E-value=1.2e+02 Score=22.72 Aligned_cols=63 Identities=24% Similarity=0.239 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 183 VALEAACTFLDSQAA----ELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQL 246 (441)
Q Consensus 183 ~~L~~~~~~L~~~~~----~Le~~~~~~Ld~L~~~i~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~L 246 (441)
.+|..+-..++..+. ++|.-|..-++++...+. .+-+.+...|.++.++++.++.+.-.|+.+
T Consensus 9 ~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~-~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 9 AAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAAN-RNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555544 233334444555543332 234668889999999999999998888765
No 34
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=38.50 E-value=23 Score=25.52 Aligned_cols=29 Identities=10% Similarity=0.455 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCC
Q 013541 412 KWVLIITGVCGIIIFCAFVWFFKYRRLMP 440 (441)
Q Consensus 412 ~~v~~~~~~~~~~~~~~~~~~frrk~wl~ 440 (441)
+|++++.+++++++...+.+.++|-++|.
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWKIGFFK 37 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 34444555556555555666666666653
No 35
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=37.61 E-value=1.1e+02 Score=29.20 Aligned_cols=56 Identities=23% Similarity=0.217 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 013541 180 ALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRV 236 (441)
Q Consensus 180 aLE~~L~~~~~~L~~~~~~Le~~~~~~Ld~L~~~i~~~~Le~l~~lK~~L~~l~~~v 236 (441)
.||++-......+=.++..|...+..+..+|...+... -+|+..|+.++..|+..|
T Consensus 25 eLe~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~~~~-~~R~~~L~~RI~~L~~~v 80 (279)
T 3p8c_D 25 ELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSF-SFRVNSLQERVDRLSVSV 80 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 37888777777777777777778888888887665432 245555555555555444
No 36
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=36.16 E-value=92 Score=28.43 Aligned_cols=29 Identities=14% Similarity=-0.001 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013541 345 NKLTSLKEYIDDTEDFINIQLDNVRNQLI 373 (441)
Q Consensus 345 ~~~~~l~~~i~~~e~~i~i~L~~~~N~l~ 373 (441)
..++.+++.+..+.+.+....++++|+.|
T Consensus 224 e~i~~~re~~~~l~d~~~s~~s~~~N~~m 252 (252)
T 3ck6_A 224 ETIEFYLGEVALFQDEIKHNRDEKTNKNS 252 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 35556667777777888888888888875
No 37
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=35.49 E-value=42 Score=24.16 Aligned_cols=29 Identities=10% Similarity=0.308 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCC
Q 013541 412 KWVLIITGVCGIIIFCAFVWFFKYRRLMP 440 (441)
Q Consensus 412 ~~v~~~~~~~~~~~~~~~~~~frrk~wl~ 440 (441)
+|++++.++++++++..+.+.++|-++|.
T Consensus 12 ~wiIi~svl~GLllL~li~~~LwK~GFFk 40 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 44555555566666666666666666653
No 38
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=33.90 E-value=4.6e+02 Score=27.92 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 013541 220 ERVRRLKSRLVALTRRVQKVRDEIEQLMD 248 (441)
Q Consensus 220 e~l~~lK~~L~~l~~~v~~vre~l~~LLd 248 (441)
+++..++..+..+++..+.+++.+.++.+
T Consensus 366 ~~l~~~~~~~~~l~~~~~~~~~~l~~~~~ 394 (695)
T 2j69_A 366 KRIDSVEPEFNKLTGIRDEFQKEIINTRD 394 (695)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666655554
No 39
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.92 E-value=3.7e+02 Score=28.02 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 013541 327 EELEMLLEAYFVVID 341 (441)
Q Consensus 327 eelE~LLE~Y~~~id 341 (441)
+|||.-+++-...|+
T Consensus 113 ~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345544433333333
No 40
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=29.95 E-value=1.1e+02 Score=24.41 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013541 219 LERVRRLKSRLVALTRRV 236 (441)
Q Consensus 219 Le~l~~lK~~L~~l~~~v 236 (441)
..+|+.+|+.|..+++.+
T Consensus 84 ~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 84 MSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 467888888887777654
No 41
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=27.51 E-value=2.4e+02 Score=22.60 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=18.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 173 YLPFEFRALEVALEAACTFLDSQAAELEIE 202 (441)
Q Consensus 173 ~LPFE~raLE~~L~~~~~~L~~~~~~Le~~ 202 (441)
.|..-|.=|....+.+-+-|+.+++.|+.+
T Consensus 33 ELs~tfarLc~~Vd~t~~eL~~EI~~L~~e 62 (96)
T 1t3j_A 33 EMATTFARLCQQVDMTQKHLEEEIARLSKE 62 (96)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666677777777777777766655555
No 42
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.29 E-value=3.1e+02 Score=28.03 Aligned_cols=51 Identities=20% Similarity=0.327 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 195 QAAELEIEAYPLLDELTSKISTL------NLERVRRLKSRLVALTRRVQKVRDEIEQ 245 (441)
Q Consensus 195 ~~~~Le~~~~~~Ld~L~~~i~~~------~Le~l~~lK~~L~~l~~~v~~vre~l~~ 245 (441)
.+...+..|..+.++|+.++..+ ++.+|+.||+.|..++..++++-..|.-
T Consensus 101 q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 101 GAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677777777765433 3466666666666666666666655543
No 43
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.64 E-value=4.3e+02 Score=26.28 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013541 327 EELEMLLEAYFVVIDSTLNKLTSLKE 352 (441)
Q Consensus 327 eelE~LLE~Y~~~id~~~~~~~~l~~ 352 (441)
++||.-.++-...|+.-+..+..|+.
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~ 141 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQK 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444444444444433333333333
Done!