Citrus Sinensis ID: 013542

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-

MAELKERLLPPKPASAINLRDSSFRPSASGRQPFQGVDVLGLKKRGQGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRRLMPL

cHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEcHHHHHHHcccccccccccccccccccEEcccccEEEEEcccEEEEEEcccEEEEccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccc

ccHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEccHHHHHHHccccHHHHHHccccccccccEEccccEEEEEHHHEEEEEEccEEEEcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc

maelkerllppkpasainlrdssfrpsasgrqpfqgvdVLGLKKRGQGLRSWIRVdvsgnsqiievdkfsmmrrcdlpardlrlldplfvypstilgREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEvwqsegdtnrrrsrnfdnvfgntspdylpfEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRmeasfygdqsvlgyrsndiqsisapvspvssppdtrkLEKSLSIARSrhesmrssdsttDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIfgmnfaipffdepaaFKWVLIITGVCGIIIFCAFVWFFKYRRLMPL

maelkerllppkpasainlrdssfrpsasgrqpfqgvdvlGLKKRgqglrswirvdvsgnsqiievdkfsmmRRCDLpardlrlldpLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLTaagvnevwqsegdtnrrrsrnfDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSkistlnlervrrlksrlvaltrrvqkvrdeieqlmdddgdMAEMYLTEKKSRMEASFYGDQSVLGYRSNDIQSIsapvspvssppdtrKLEKSLSiarsrhesmrssdsttdSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRRLMPL

MAELKERLLPPKPASAINLRDSSFRPSASGRQPFQGVDVLGLKKRGQGLRSWIRVDVSGNSQIIEVDKFSMMrrcdlpardlrlldplFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSNDIQSIsapvspvssppDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRRLMPL

***********************************GVDVLGLKKRGQGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQ************FDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVR****************************************************************************************LEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRRL***

************************************************LRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVE**************************************YLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSNDI***************************************TDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRRLMPL

MAELKERLLPPKPASAINLRDSSFRPSASGRQPFQGVDVLGLKKRGQGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLTAAGVNE*********RRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSNDIQSI***************************************VEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRRLMPL

***********************************GVDVL*****GQGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLTA******************************DYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRM*********************************************************TDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRRLMPL

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MAELKERLLPPKPASAINLRDSSFRPSASGRQPFQGVDVLGLKKRGQGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERxxxxxxxxxxxxxxxxxxxxxxxxxxxxDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRRLMPL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		441	2.2.26 [Sep-21-2011]
Q9S9N4		442	Magnesium transporter MRS	yes	no	0.997	0.995	0.857	0.0
Q9SAH0		443	Magnesium transporter MRS	no	no	1.0	0.995	0.837	0.0
Q67UQ7		436	Magnesium transporter MRS	yes	no	0.879	0.889	0.760	1e-175
A2YFN7		436	Magnesium transporter MRS	N/A	no	0.879	0.889	0.760	1e-175
Q0JBZ6		428	Magnesium transporter MRS	no	no	0.854	0.880	0.675	1e-150
A2XV81		428	Magnesium transporter MRS	N/A	no	0.854	0.880	0.675	1e-150
Q9ZPR4		421	Magnesium transporter MRS	no	no	0.918	0.961	0.546	1e-116
Q304A0		386	Magnesium transporter MRS	no	no	0.834	0.953	0.495	3e-93
Q9LJN2		484	Magnesium transporter MRS	no	no	0.873	0.795	0.457	2e-92
Q8L4S2		444	Magnesium transporter MRS	no	no	0.807	0.801	0.436	1e-83

>sp\|Q9S9N4\|MRS21_ARATH Magnesium transporter MRS2-1 OS=Arabidopsis thaliana GN=MRS2-1 PE=2 SV=1	Back alignment and function desciption

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/443 (85%), Positives = 412/443 (93%), Gaps = 3/443 (0%)

Query: 1   MAELKERLLPPKPASAINLRDSSF-RPSASGRQPFQGVDVLGLKKRGQGLRSWIRVDVSG 59
           M+ELKERLLPP+PASA+NLRD+S  RPSASGR P  GVDVLGLKKRGQGLRSWIRVD SG
Sbjct: 1   MSELKERLLPPRPASAMNLRDASVTRPSASGRPPLLGVDVLGLKKRGQGLRSWIRVDTSG 60

Query: 60  NSQIIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVL 119
           N+Q++EVDKF+MMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVL
Sbjct: 61  NTQVMEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVL 120

Query: 120 LLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDT-NRRRSRNFDNVFGNTSPDYLPFEF 178
           LLNSLD+YVL+YVVELQ+RL  + V E+WQ E    +RRRSR+FDN F N+SPDYLPFEF
Sbjct: 121 LLNSLDNYVLRYVVELQQRLKTSSVGEMWQQENSQLSRRRSRSFDNAFENSSPDYLPFEF 180

Query: 179 RALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQK 238
           RALE+ALEAACTFLDSQA+ELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQK
Sbjct: 181 RALEIALEAACTFLDSQASELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQK 240

Query: 239 VRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSNDIQSISAPVSPVSSPPD 298
           VRDEIEQLMDDDGDMAEMYLTEKK RME S YGDQS+LGYRSND  S+SAPVSPVSSPPD
Sbjct: 241 VRDEIEQLMDDDGDMAEMYLTEKKRRMEGSMYGDQSLLGYRSNDGLSVSAPVSPVSSPPD 300

Query: 299 TRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTE 358
           +R+L+KSLSIARSRH+S RSS+   +++EELEMLLEAYFVVIDSTLNKLTSLKEYIDDTE
Sbjct: 301 SRRLDKSLSIARSRHDSARSSEG-AENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTE 359

Query: 359 DFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIIT 418
           DFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNF I FF++P AF+WVLIIT
Sbjct: 360 DFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIDFFNQPGAFRWVLIIT 419

Query: 419 GVCGIIIFCAFVWFFKYRRLMPL 441
           GVCG +IF AFVWFFKYRRLMPL
Sbjct: 420 GVCGFVIFSAFVWFFKYRRLMPL 442

Magnesium transporter that may mediate the influx of magnesium.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SAH0\|MRS2A_ARATH Magnesium transporter MRS2-10 OS=Arabidopsis thaliana GN=MRS2-10 PE=2 SV=1	Back alignment and function description

>sp\|Q67UQ7\|MRS2B_ORYSJ Magnesium transporter MRS2-B OS=Oryza sativa subsp. japonica GN=MRS2-B PE=2 SV=1	Back alignment and function description

>sp\|A2YFN7\|MRS2B_ORYSI Magnesium transporter MRS2-B OS=Oryza sativa subsp. indica GN=MRS2-B PE=3 SV=1	Back alignment and function description

>sp\|Q0JBZ6\|MRS2C_ORYSJ Magnesium transporter MRS2-C OS=Oryza sativa subsp. japonica GN=MRS2-C PE=3 SV=3	Back alignment and function description

>sp\|A2XV81\|MRS2C_ORYSI Magnesium transporter MRS2-C OS=Oryza sativa subsp. indica GN=H0311C03.3 PE=3 SV=2	Back alignment and function description

>sp\|Q9ZPR4\|MRS25_ARATH Magnesium transporter MRS2-5 OS=Arabidopsis thaliana GN=MRS2-5 PE=1 SV=1	Back alignment and function description

>sp\|Q304A0\|MRS27_ARATH Magnesium transporter MRS2-7 OS=Arabidopsis thaliana GN=MRS2-7 PE=2 SV=1	Back alignment and function description

>sp\|Q9LJN2\|MRS23_ARATH Magnesium transporter MRS2-3 OS=Arabidopsis thaliana GN=MRS2-3 PE=1 SV=1	Back alignment and function description

>sp\|Q8L4S2\|MRS2F_ORYSJ Magnesium transporter MRS2-F OS=Oryza sativa subsp. japonica GN=MRS2-F PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		441
255543347		447	RNA splicing protein mrs2, mitochondrial	1.0	0.986	0.906	0.0
224115768		443	magnesium transporter [Populus trichocar	1.0	0.995	0.920	0.0
224075714		443	magnesium transporter [Populus trichocar	1.0	0.995	0.900	0.0
356556780		443	PREDICTED: magnesium transporter MRS2-1-	1.0	0.995	0.893	0.0
356550671		443	PREDICTED: magnesium transporter MRS2-1-	1.0	0.995	0.891	0.0
449497201		447	PREDICTED: magnesium transporter MRS2-1-	1.0	0.986	0.892	0.0
449439761		447	PREDICTED: magnesium transporter MRS2-1-	1.0	0.986	0.892	0.0
297850020		443	hypothetical protein ARALYDRAFT_471800 [	1.0	0.995	0.857	0.0
225443146		444	PREDICTED: magnesium transporter MRS2-1-	1.0	0.993	0.880	0.0
358346447		448	Magnesium transporter MRS2-like protein	1.0	0.984	0.850	0.0

>gi\|255543347\|ref\|XP_002512736.1\| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis] gi\|223547747\|gb\|EEF49239.1\| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/447 (90%), Positives = 427/447 (95%), Gaps = 6/447 (1%)

Query: 1   MAELKERLLPPKPASAINLRDSSFRPSASGRQPFQGVDVLGLKKRGQGLRSWIRVDVSGN 60
           MA+LKERLLPPKPASAINLRD+S+R SASGRQPFQG+DVLGLKKRGQGLRSWIRVD+SGN
Sbjct: 1   MADLKERLLPPKPASAINLRDASYRASASGRQPFQGIDVLGLKKRGQGLRSWIRVDLSGN 60

Query: 61  SQIIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLL 120
           SQ+IEVDKF+MMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLL
Sbjct: 61  SQVIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLL 120

Query: 121 LNSLDSYVLQYVVELQRRLTAAGVNEVWQSEG-DTNRRRSRNFD----NVFGNTSPDYLP 175
           LNSLDSYVLQYVVELQRRLTA GV EVWQSEG + NRRRSRNFD    NVFGN SPDYLP
Sbjct: 121 LNSLDSYVLQYVVELQRRLTAPGVGEVWQSEGPELNRRRSRNFDRNFDNVFGNPSPDYLP 180

Query: 176 FEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRR 235
           FEFRALEVALEAACTFLDSQ +ELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRR
Sbjct: 181 FEFRALEVALEAACTFLDSQVSELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRR 240

Query: 236 VQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSNDIQ-SISAPVSPVS 294
           VQKVRDEIEQLMDDDGDMAEMYLTEKK RME+SFYGDQS++G+RSND   S+SAPVSPVS
Sbjct: 241 VQKVRDEIEQLMDDDGDMAEMYLTEKKGRMESSFYGDQSLMGFRSNDGGISLSAPVSPVS 300

Query: 295 SPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYI 354
           SPPD+R+LEKSLSIARSRHESM+SS+S T+S+E+LEMLLEAYFVVIDSTLNKLTSLKEYI
Sbjct: 301 SPPDSRRLEKSLSIARSRHESMKSSESATESIEQLEMLLEAYFVVIDSTLNKLTSLKEYI 360

Query: 355 DDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWV 414
           DDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIP FD+P AFKWV
Sbjct: 361 DDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPMFDDPRAFKWV 420

Query: 415 LIITGVCGIIIFCAFVWFFKYRRLMPL 441
           LIITGV GI IFCAFVWFFKYRRLMPL
Sbjct: 421 LIITGVAGITIFCAFVWFFKYRRLMPL 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224115768\|ref\|XP_002332052.1\| magnesium transporter [Populus trichocarpa] gi\|222831938\|gb\|EEE70415.1\| magnesium transporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224075714\|ref\|XP_002304732.1\| magnesium transporter [Populus trichocarpa] gi\|222842164\|gb\|EEE79711.1\| magnesium transporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356556780\|ref\|XP_003546700.1\| PREDICTED: magnesium transporter MRS2-1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356550671\|ref\|XP_003543708.1\| PREDICTED: magnesium transporter MRS2-1-like [Glycine max]	Back alignment and taxonomy information

>gi\|449497201\|ref\|XP_004160340.1\| PREDICTED: magnesium transporter MRS2-1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449439761\|ref\|XP_004137654.1\| PREDICTED: magnesium transporter MRS2-1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297850020\|ref\|XP_002892891.1\| hypothetical protein ARALYDRAFT_471800 [Arabidopsis lyrata subsp. lyrata] gi\|297338733\|gb\|EFH69150.1\| hypothetical protein ARALYDRAFT_471800 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|225443146\|ref\|XP_002263392.1\| PREDICTED: magnesium transporter MRS2-1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|358346447\|ref\|XP_003637279.1\| Magnesium transporter MRS2-like protein [Medicago truncatula] gi\|355503214\|gb\|AES84417.1\| Magnesium transporter MRS2-like protein [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		441
TAIR\|locus:2200542		442	MGT2 "magnesium transporter 2"	0.997	0.995	0.796	7.8e-181
TAIR\|locus:2025767		443	MGT1 "magnesium transporter 1"	1.0	0.995	0.776	1.7e-176
TAIR\|locus:2044254		421	MGT3 "magnesium transporter 3"	0.609	0.638	0.552	1.6e-98
TAIR\|locus:2091176		484	MGT4 "magnesium transporter 4"	0.272	0.247	0.590	8.7e-81
TAIR\|locus:2174799		394	MGT9 "magnesium transporter 9"	0.489	0.548	0.502	1.5e-79
TAIR\|locus:2139905		408	MGT5 "AT4G28580" [Arabidopsis	0.537	0.580	0.373	3.3e-53
TAIR\|locus:2077665		436	MGT6 "magnesium transporter 6"	0.564	0.571	0.447	2.1e-52
TAIR\|locus:2144746		294	AT5G09720 [Arabidopsis thalian	0.580	0.870	0.395	2.6e-40
POMBASE\|SPBC25H2.08c		422	mrs2 "magnesium ion transporte	0.249	0.260	0.355	1.2e-18
UNIPROTKB\|Q4I298		498	MRS2 "Mitochondrial inner memb	0.208	0.184	0.368	1.2e-17

TAIR\|locus:2200542 MGT2 "magnesium transporter 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1755 (622.8 bits), Expect = 7.8e-181, P = 7.8e-181
 Identities = 353/443 (79%), Positives = 385/443 (86%)

Query:     1 MAELKERLLPPKPASAINLRDSSF-RPSASGRQPFQGVDVLGLKKRGQGLRSWIRVDVSG 59
             M+ELKERLLPP+PASA+NLRD+S  RPSASGR P  GVDVLGLKKRGQGLRSWIRVD SG
Sbjct:     1 MSELKERLLPPRPASAMNLRDASVTRPSASGRPPLLGVDVLGLKKRGQGLRSWIRVDTSG 60

Query:    60 NSQIIEVDKFSMMXXXXXXXXXXXXXXXXFVYPSTILGREKAIVVNLEQIRCIITADEVL 119
             N+Q++EVDKF+MM                FVYPSTILGREKAIVVNLEQIRCIITADEVL
Sbjct:    61 NTQVMEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVL 120

Query:   120 LLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDT-NRRRSRNFDNVFGNTSPDYLPFEF 178
             LLNSLD+YVL+YVVELQ+RL  + V E+WQ E    +RRRSR+FDN F N+SPDYLPFEF
Sbjct:   121 LLNSLDNYVLRYVVELQQRLKTSSVGEMWQQENSQLSRRRSRSFDNAFENSSPDYLPFEF 180

Query:   179 RALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQK 238
             RALE+ALEAACTFLDSQA+ELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQK
Sbjct:   181 RALEIALEAACTFLDSQASELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQK 240

Query:   239 VRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSNDIQSIXXXXXXXXXXXD 298
             VRDEIEQLMDDDGDMAEMYLTEKK RME S YGDQS+LGYRSND  S+           D
Sbjct:   241 VRDEIEQLMDDDGDMAEMYLTEKKRRMEGSMYGDQSLLGYRSNDGLSVSAPVSPVSSPPD 300

Query:   299 TRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTE 358
             +R+L+KSLSIARSRH+S RSS+   +++EELEMLLEAYFVVIDSTLNKLTSLKEYIDDTE
Sbjct:   301 SRRLDKSLSIARSRHDSARSSEGA-ENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTE 359

Query:   359 DFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIIT 418
             DFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNF I FF++P AF+WVLIIT
Sbjct:   360 DFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIDFFNQPGAFRWVLIIT 419

Query:   419 GVCGIIIFCAFVWFFKYRRLMPL 441
             GVCG +IF AFVWFFKYRRLMPL
Sbjct:   420 GVCGFVIFSAFVWFFKYRRLMPL 442

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0030001 "metal ion transport" evidence=IEA;ISS

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IDA

TAIR\|locus:2025767 MGT1 "magnesium transporter 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2044254 MGT3 "magnesium transporter 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091176 MGT4 "magnesium transporter 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2174799 MGT9 "magnesium transporter 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2139905 MGT5 "AT4G28580" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077665 MGT6 "magnesium transporter 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2144746 AT5G09720 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

POMBASE\|SPBC25H2.08c mrs2 "magnesium ion transporter Mrs2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4I298 MRS2 "Mitochondrial inner membrane magnesium transporter MRS2" [Gibberella zeae PH-1 (taxid:229533)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S9N4	MRS21_ARATH	No assigned EC number	0.8577	0.9977	0.9954	yes	no
Q67UQ7	MRS2B_ORYSJ	No assigned EC number	0.7601	0.8798	0.8899	yes	no
Q9SAH0	MRS2A_ARATH	No assigned EC number	0.8374	1.0	0.9954	no	no
A2XV81	MRS2C_ORYSI	No assigned EC number	0.6754	0.8548	0.8808	N/A	no
A2YFN7	MRS2B_ORYSI	No assigned EC number	0.7601	0.8798	0.8899	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.02080014	magnesium transporter (444 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		441
cd12823		323	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae	1e-126
cd12821		285	cd12821, EcCorA_ZntB-like, Escherichia coli CorA-S	1e-08
cd12827		289	cd12827, EcCorA_ZntB-like_u2, uncharacterized bact	2e-08
COG0598		322	COG0598, CorA, Mg2+ and Co2+ transporters [Inorgan	1e-06
pfam01544		291	pfam01544, CorA, CorA-like Mg2+ transporter protei	4e-06
cd12822		289	cd12822, TmCorA-like, Thermotoga maritima CorA-lik	5e-06
cd12835		287	cd12835, EcCorA-like_1, Escherichia coli Mg2+ tran	5e-04
cd12833		290	cd12833, ZntB-like_1, Salmonella typhimurium Zn2+	0.001
cd12837		298	cd12837, EcCorA-like_u1, uncharacterized subgroup	0.001
cd12829		305	cd12829, Alr1p-like, Saccharomyces cerevisiae Alr1	0.004

>gnl\|CDD\|213357 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family	Back alignment and domain information

 Score =  369 bits (949), Expect = e-126
 Identities = 164/391 (41%), Positives = 212/391 (54%), Gaps = 72/391 (18%)

Query: 52  WIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRLLDPLFV-YPSTILGREKAIVVNLEQIR 110
           W  +D +GN+ ++E+DK  ++R   L  RDLRLLDP    YP +IL RE AI+VNLE IR
Sbjct: 1   WTVIDSTGNATVVELDKSELLRELGLQPRDLRLLDPTLTSYPPSILVRENAILVNLEHIR 60

Query: 111 CIITADEVLLLNSLDS---YVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFG 167
            IITADEVLL +   S    V  ++ ELQRRL ++  +E                     
Sbjct: 61  AIITADEVLLFDPDGSSSALVSAFLEELQRRLASSNGSE-------------------SE 101

Query: 168 NTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKS 227
           +   D LPFEFRALE ALE  C+ L+++   LE EA PLLDELT KIST NLER+  LK 
Sbjct: 102 SGGEDSLPFEFRALEAALEEVCSHLEAELKRLEPEALPLLDELTDKISTSNLERLLPLKR 161

Query: 228 RLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSNDIQSIS 287
           RLV L  RVQKVRD +E+L+DDD DMA+MYLT+K +  E                     
Sbjct: 162 RLVELETRVQKVRDALEELLDDDEDMADMYLTDKAAGPERL------------------- 202

Query: 288 APVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKL 347
                                          S    D  EE+EMLLEAY   +D  LNKL
Sbjct: 203 ------------------------------ESSRKEDDHEEVEMLLEAYLQQVDELLNKL 232

Query: 348 TSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDE 407
             L+EYIDDTE+ IN+ LD+ RNQL++ EL L+  T  +A+  +VAG+FGMN      + 
Sbjct: 233 EELREYIDDTEELINLILDSRRNQLMRLELKLSIGTLSLAVGTLVAGLFGMNLPSGLEES 292

Query: 408 PAAFKWVLIITGVCGIIIFCAFVWFFKYRRL 438
           P AF  V   + V  I+IF   + + + +RL
Sbjct: 293 PYAFWIVTGGSVVGSILIFIVVLRYLRRKRL 323

A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 323

>gnl\|CDD\|213355 cd12821, EcCorA_ZntB-like, Escherichia coli CorA-Salmonella typhimurium ZntB_like family	Back alignment and domain information

>gnl\|CDD\|213361 cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	Back alignment and domain information

>gnl\|CDD\|223671 COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein	Back alignment and domain information

>gnl\|CDD\|213356 cd12822, TmCorA-like, Thermotoga maritima CorA-like family	Back alignment and domain information

>gnl\|CDD\|213369 cd12835, EcCorA-like_1, Escherichia coli Mg2+ transporter CorA_like subgroup	Back alignment and domain information

>gnl\|CDD\|213367 cd12833, ZntB-like_1, Salmonella typhimurium Zn2+ transporter ZntB-like subgroup	Back alignment and domain information

>gnl\|CDD\|213371 cd12837, EcCorA-like_u1, uncharacterized subgroup of the Escherichia coli Mg2+ transporter CorA_like subfamily	Back alignment and domain information

>gnl\|CDD\|213363 cd12829, Alr1p-like, Saccharomyces cerevisiae Alr1p-like subfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		441
KOG2662		414	consensus Magnesium transporters: CorA family [Ino	100.0
COG0598		322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	100.0
TIGR00383		318	corA magnesium Mg(2+) and cobalt Co(2+) transport	100.0
PRK09546		324	zntB zinc transporter; Reviewed	100.0
PRK11085		316	magnesium/nickel/cobalt transporter CorA; Provisio	99.96
PF01544		292	CorA: CorA-like Mg2+ transporter protein; InterPro	99.95
PRK11085		316	magnesium/nickel/cobalt transporter CorA; Provisio	95.27
PF01544		292	CorA: CorA-like Mg2+ transporter protein; InterPro	95.04
PRK09546		324	zntB zinc transporter; Reviewed	95.03
PF10267		395	Tmemb_cc2: Predicted transmembrane and coiled-coil	94.97
COG0598		322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	93.94
TIGR00383		318	corA magnesium Mg(2+) and cobalt Co(2+) transport	92.11
PF03904		230	DUF334: Domain of unknown function (DUF334); Inter	84.62
PF07332		121	DUF1469: Protein of unknown function (DUF1469); In	83.43

>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=7.3e-81  Score=621.05  Aligned_cols=360  Identities=60%  Similarity=0.861  Sum_probs=316.8

Q ss_pred             ccceecCCCcceEEEEecCCCeeEEEechhhhhhhcCCCchhhhccCCCCCCCceEeecCCeeEeeccceeeeEecCeEE
Q 013542           40 LGLKKRGQGLRSWIRVDVSGNSQIIEVDKFSMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVL  119 (441)
Q Consensus        40 ~~~~~~~~~~~~W~~id~~g~~~~~e~~k~~l~~~~gL~~RDLr~ld~~~~~ps~Il~R~~aIlvnle~i~aII~~d~vL  119 (441)
                      .+.++++.++++|++||..|+++..+++|+.|+++.||+|||||.+||+++||++|++||+|||+|+||||||||+|+|+
T Consensus        55 ~~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVl  134 (414)
T KOG2662|consen   55 SVSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVL  134 (414)
T ss_pred             ccccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhhee
Confidence            36778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCchhhhHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 013542          120 LLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAEL  199 (441)
Q Consensus       120 lf~~~~~~~~~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~L~~~~~~L  199 (441)
                      +|++.++ +.++.+++++|+.........|-.            +..  ..++.+||||||||+||+++|+.|++++.+|
T Consensus       135 l~d~~~~-v~~~~~el~~~l~~~~~~~~~q~s------------~~~--~~~~~lPFEFrALE~aLe~~~s~L~~~~~~L  199 (414)
T KOG2662|consen  135 LLDSLDP-VIPYNEELQRRLPVELESRGNQLS------------SDG--GSKDELPFEFRALEVALEAACSFLDSRLSEL  199 (414)
T ss_pred             Eeccccc-cchHHHHHHHHhcccccccccccC------------CCC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887 889999999999766432211111            111  1157899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhhhhhhhcccccCcccccccc
Q 013542          200 EIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYR  279 (441)
Q Consensus       200 e~~~~~~Ld~L~~~i~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~m~Lt~k~~~~~~s~~~~~~~~~~~  279 (441)
                      |..++|+||+|+.++++.+|++|+.+|++|++|.++|++|||+|++|||||+||++||||+|..+.+             
T Consensus       200 e~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~-------------  266 (414)
T KOG2662|consen  200 ETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQAS-------------  266 (414)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhcc-------------
Confidence            9999999999999999999999999999999999999999999999999999999999999986532             


Q ss_pred             CCCccccCCCCCCCCCCCCchhhhhhhhhhhhccccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013542          280 SNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTED  359 (441)
Q Consensus       280 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~rd~~d~~~~~~~~~~~~eelE~LLE~Y~~~id~~~~~~~~l~~~i~~~e~  359 (441)
                          .+.+.|.+|+......+. +-+.     ..+..    +..+++||+|||||+||+|+|+++++++++++|+++|||
T Consensus       267 ----~~~~~~~sp~~~~~~~r~-~~~~-----~~s~~----~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd  332 (414)
T KOG2662|consen  267 ----SPESAPTSPTIKAGISRA-KSNR-----ASSTV----RGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTED  332 (414)
T ss_pred             ----ccccCCCCccccCCccch-hhcc-----cchhc----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence                133445554433322220 0000     00001    226789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Q 013542          360 FINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFAIPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRRLM  439 (441)
Q Consensus       360 ~i~i~L~~~~N~l~~~~l~LTi~t~i~~p~t~IaGifGMN~~~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk~wl  439 (441)
                      +|+|+||++||++|+++++||+.|++++.+++|+|+||||++.++++.+|+|+|+++++++.|+++|++.++|+|+||++
T Consensus       333 ~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~~l~~~~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL~  412 (414)
T KOG2662|consen  333 IINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPSSLEEDHYAFKWVVGITFTLCIVLFVVILGYAKLKRLL  412 (414)
T ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CC
Q 013542          440 PL  441 (441)
Q Consensus       440 ~~  441 (441)
                      ++
T Consensus       413 ~~  414 (414)
T KOG2662|consen  413 GL  414 (414)
T ss_pred             CC
Confidence            64

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)	Back alignment and domain information

>PRK09546 zntB zinc transporter; Reviewed	Back alignment and domain information

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional	Back alignment and domain information

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]	Back alignment and domain information

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional	Back alignment and domain information

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]	Back alignment and domain information

>PRK09546 zntB zinc transporter; Reviewed	Back alignment and domain information

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans	Back alignment and domain information

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)	Back alignment and domain information

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function	Back alignment and domain information

>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		441
3rkg_A		261	Structural And Functional Characterization Of The Y		3e-04

>pdb|3RKG|A Chain A, Structural And Functional Characterization Of The Yeast Mg2+ Channel Mrs2 Length = 261

Back alignment and structure

Iteration: 1

Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 35/176 (19%) Query: 94 TILGREKAIVVNLEQIRCIITADEVLLLNSLDSY------VLQYVVELQRRLTAAGVNEV 147 TI+ + IV+NL I+ +I D+V + ++ + VL Y +L+ +L++ N Sbjct: 64 TIMCKPNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMY--DLESKLSSTKNNSQ 121 Query: 148 WQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLL 207 + R +++F N ALE + L SQ +L Sbjct: 122 FYEH--------RALESIFINV--------MSALETDFK-----LHSQIC------IQIL 154 Query: 208 DELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKS 263 ++L ++++ L L + L ++ +RD +++L+++D D+A MYLT KKS Sbjct: 155 NDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS 210

PyMOL of 3rkg

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		441
3rkg_A		261	Magnesium transporter MRS2, mitochondrial; matrix	3e-58
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
2iub_A		363	CORA, divalent cation transport-related protein; m	7e-05

>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae} Length = 261	Back alignment and structure

 Score =  191 bits (485), Expect = 3e-58
 Identities = 61/334 (18%), Positives = 111/334 (33%), Gaps = 84/334 (25%)

Query: 42  LKKRGQGLRSWIRVDVSGNSQII--EVDKFSMMRRCDLPARDLRLLD-PLFVYPSTILGR 98
           +        S    +  GN   +  +  K+S +    L  RDLR +D        TI+ +
Sbjct: 9   ISASDSLFISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCK 68

Query: 99  EKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLTAAGVNEVWQSEGDTNRRR 158
              IV+NL  I+ +I  D+V + ++ +      +  L                       
Sbjct: 69  PNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMYD-------------------- 108

Query: 159 SRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLN 218
               ++   +T  +   +E RALE       + L++           +L++L ++++ L 
Sbjct: 109 ---LESKLSSTKNNSQFYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLK 165

Query: 219 LERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGY 278
           L  +      L    ++   +RD +++L+++D D+A MYLT KKS  +     +  +  Y
Sbjct: 166 LRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKSPKDNFSDLEMLIETY 225

Query: 279 RSNDIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFV 338
                                                    D      E           
Sbjct: 226 -------------------------------------YTQCDEYVQQSES---------- 238

Query: 339 VIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQL 372
                      L + I  TE+ +NI LD  RN L
Sbjct: 239 -----------LIQDIKSTEEIVNIILDANRNSL 261

PyMOL of 3rkg

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A Length = 363	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		441
3rkg_A		261	Magnesium transporter MRS2, mitochondrial; matrix	100.0
2iub_A		363	CORA, divalent cation transport-related protein; m	100.0
4ev6_A		339	Magnesium transport protein CORA; membrane protein	100.0
4egw_A		280	Magnesium transport protein CORA; magnesium transp	99.7
3ck6_A		252	Putative membrane transport protein; APC91421.1, Z	99.51
3nvo_A		264	Zinc transport protein ZNTB; alpha-beta-alpha sand	99.48
2bbh_A		269	Divalent cation transport-related protein; transpo	99.31
2hn1_A		266	CORA, magnesium and cobalt transporter; integral m	99.08
4ev6_A		339	Magnesium transport protein CORA; membrane protein	91.93
2iub_A		363	CORA, divalent cation transport-related protein; m	86.08

>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=1.4e-53  Score=413.17  Aligned_cols=239  Identities=28%  Similarity=0.427  Sum_probs=217.9

Q ss_pred             cceEEEEecCCCeeEEE--echhhhhhhcCCCchhhhccCCCC-CCCceEeecCCeeEeeccceeeeEecCeEEEeecCC
Q 013542           49 LRSWIRVDVSGNSQIIE--VDKFSMMRRCDLPARDLRLLDPLF-VYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLD  125 (441)
Q Consensus        49 ~~~W~~id~~g~~~~~e--~~k~~l~~~~gL~~RDLr~ld~~~-~~ps~Il~R~~aIlvnle~i~aII~~d~vLlf~~~~  125 (441)
                      ..+|+.||..|++..++  ++|++|++++||+|||||++||.+ +++|+|++|++||+||++||||||++|+|++|++.+
T Consensus        16 ~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~~   95 (261)
T 3rkg_A           16 FISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTN   95 (261)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCSC
T ss_pred             eEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCCC
Confidence            56899999999999876  999999999999999999999985 455579999999999999999999999999999887


Q ss_pred             chhh----hHHHHHHHHHhhcCCCccccccCcccccccCCcCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 013542          126 SYVL----QYVVELQRRLTAAGVNEVWQSEGDTNRRRSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEI  201 (441)
Q Consensus       126 ~~~~----~f~~~L~~rL~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~LPFE~raLE~~L~~~~~~L~~~~~~Le~  201 (441)
                      +.+.    .|+.+++.|+..++                           .+.+|||||||||||.++|+.|++++..++.
T Consensus        96 ~~~~~~~~~f~~~l~~~l~~~~---------------------------~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~  148 (261)
T 3rkg_A           96 PSAAAKLSVLMYDLESKLSSTK---------------------------NNSQFYEHRALESIFINVMSALETDFKLHSQ  148 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSS---------------------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHhccCC---------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6554    58899999987542                           2359999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhhhhhhhcccccCccccccccCC
Q 013542          202 EAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKSRMEASFYGDQSVLGYRSN  281 (441)
Q Consensus       202 ~~~~~Ld~L~~~i~~~~Le~l~~lK~~L~~l~~~v~~vre~l~~LLddD~dm~~m~Lt~k~~~~~~s~~~~~~~~~~~~~  281 (441)
                      .+.++|++|++++++.+|++|+..|++|+.+.++|+.+|++|+++|+||+||+.||||+|..                  
T Consensus       149 ~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~------------------  210 (261)
T 3rkg_A          149 ICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS------------------  210 (261)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC------------------
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC------------------
Confidence            99999999999999999999999999999999999999999999999999999999997531                  


Q ss_pred             CccccCCCCCCCCCCCCchhhhhhhhhhhhccccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013542          282 DIQSISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSDSTTDSVEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFI  361 (441)
Q Consensus       282 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~rd~~d~~~~~~~~~~~~eelE~LLE~Y~~~id~~~~~~~~l~~~i~~~e~~i  361 (441)
                                                              ..++++|+|||||+|++|+|++.++++.+++++++||++|
T Consensus       211 ----------------------------------------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i  250 (261)
T 3rkg_A          211 ----------------------------------------PKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIV  250 (261)
T ss_dssp             ----------------------------------------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                    1235799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 013542          362 NIQLDNVRNQL  372 (441)
Q Consensus       362 ~i~L~~~~N~l  372 (441)
                      ++.||++||++
T Consensus       251 ~i~LD~~RN~L  261 (261)
T 3rkg_A          251 NIILDANRNSL  261 (261)
T ss_dssp             HHHHHHTC---
T ss_pred             HHHHhhhccCC
Confidence            99999999985

PyMOL of 3rkg

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A	Back alignment and structure

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}	Back alignment and structure

>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}	Back alignment and structure

>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*	Back alignment and structure

>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A	Back alignment and structure

>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1	Back alignment and structure

>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}	Back alignment and structure

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}	Back alignment and structure

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		441
d2iuba2		64	f.17.3.1 (A:286-349) Magnesium transport protein C	6e-08

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Length = 64	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.4 bits (113), Expect = 6e-08
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 378 LLTTATFVVAIFGVVAGIFGMNFA-IPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYR 436
           +LT    +      +AGI+GMNF  +P       +  VL + GV  +I+      +FK +
Sbjct: 8   VLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMV----VYFKKK 63

Query: 437 R 437
           +
Sbjct: 64  K 64

PyMOL of d2iuba2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		441
d2iuba2		64	Magnesium transport protein CorA {Thermotoga marit	99.73
d2bbha1		232	Magnesium transport protein CorA, soluble domain {	99.43

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=9.3e-19  Score=132.83  Aligned_cols=62  Identities=29%  Similarity=0.491  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccCC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013542          372 LIQFELLLTTATFVVAIFGVVAGIFGMNFA-IPFFDEPAAFKWVLIITGVCGIIIFCAFVWFFKYRR  437 (441)
Q Consensus       372 l~~~~l~LTi~t~i~~p~t~IaGifGMN~~-~p~~~~~~~f~~v~~~~~~~~~~~~~~~~~~frrk~  437 (441)
                      +|+.+++||++|++|+|+|+|||+||||++ +|+.+++++||++++++++++++    +++||||||
T Consensus         2 ~N~~mk~lT~it~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~~~~~~~~----~~~~f~rkk   64 (64)
T d2iuba2           2 TNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVI----MVVYFKKKK   64 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHH----HHTTTTSCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHH----HHHHHhccC
Confidence            344445599999999999999999999998 99999999999999988877765    789999987

PyMOL of d2iuba2

>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure