Query 013543
Match_columns 441
No_of_seqs 394 out of 2053
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:55:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 5.2E-80 1.1E-84 594.4 25.6 299 23-332 65-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 2.8E-76 6.2E-81 592.7 35.0 300 22-331 31-338 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 4.5E-75 9.8E-80 600.6 30.6 304 23-333 163-488 (489)
4 PTZ00200 cysteine proteinase; 100.0 6.6E-73 1.4E-77 582.6 32.6 303 22-334 119-446 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 1.3E-68 2.8E-73 533.6 30.9 289 33-333 30-324 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 6.5E-55 1.4E-59 420.5 21.7 209 117-332 1-241 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 4.1E-54 9E-59 413.9 22.1 210 117-332 1-237 (239)
8 cd02620 Peptidase_C1A_Cathepsi 100.0 7.7E-54 1.7E-58 411.2 21.7 205 118-329 1-234 (236)
9 cd02248 Peptidase_C1A Peptidas 100.0 2.2E-53 4.7E-58 400.0 22.4 207 118-331 1-210 (210)
10 PF00112 Peptidase_C1: Papain 100.0 9.3E-53 2E-57 396.5 19.1 213 117-332 1-219 (219)
11 PTZ00364 dipeptidyl-peptidase 100.0 6.9E-51 1.5E-55 425.3 22.9 220 114-342 202-467 (548)
12 PTZ00049 cathepsin C-like prot 100.0 1.6E-50 3.6E-55 426.5 22.0 213 114-333 378-676 (693)
13 smart00645 Pept_C1 Papain fami 100.0 1.5E-47 3.3E-52 351.1 18.1 166 117-327 1-169 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 2.7E-44 5.8E-49 339.5 20.1 194 120-315 1-213 (223)
15 PTZ00462 Serine-repeat antigen 100.0 4.4E-42 9.5E-47 371.8 21.7 199 129-332 544-780 (1004)
16 KOG1544 Predicted cysteine pro 100.0 3.4E-41 7.4E-46 321.0 8.9 264 58-329 151-456 (470)
17 KOG4296 Epithelin/granulin [Si 100.0 2.1E-30 4.6E-35 199.9 5.0 74 349-423 1-74 (90)
18 COG4870 Cysteine protease [Pos 100.0 9.4E-29 2E-33 241.9 7.4 195 115-315 97-314 (372)
19 smart00277 GRAN Granulin. 99.9 1.5E-22 3.3E-27 144.4 3.6 51 350-406 1-51 (51)
20 cd00585 Peptidase_C1B Peptidas 99.9 2.7E-21 5.8E-26 198.8 13.8 179 130-314 55-399 (437)
21 PF00396 Granulin: Granulin; 99.7 6.8E-18 1.5E-22 117.1 2.0 43 360-408 1-43 (43)
22 PF08246 Inhibitor_I29: Cathep 99.7 6.1E-17 1.3E-21 121.4 7.2 58 29-86 1-58 (58)
23 PF03051 Peptidase_C1_2: Pepti 99.5 6.3E-14 1.4E-18 144.6 15.1 179 130-314 56-400 (438)
24 smart00848 Inhibitor_I29 Cathe 99.5 8.8E-15 1.9E-19 109.0 5.7 57 29-85 1-57 (57)
25 COG3579 PepC Aminopeptidase C 98.3 2.3E-06 5E-11 83.8 8.9 75 236-312 297-400 (444)
26 PF13529 Peptidase_C39_2: Pept 97.1 0.0069 1.5E-07 52.1 11.0 125 131-299 4-144 (144)
27 PF08127 Propeptide_C1: Peptid 96.4 0.0031 6.6E-08 43.6 3.0 36 57-95 3-38 (41)
28 PF05543 Peptidase_C47: Stapho 95.2 0.21 4.6E-06 45.4 10.1 118 134-300 18-145 (175)
29 PF14399 Transpep_BrtH: NlpC/p 85.2 2.3 5.1E-05 42.1 6.8 65 236-313 78-143 (317)
30 COG4990 Uncharacterized protei 78.7 4.2 9E-05 37.3 5.1 52 229-300 116-168 (195)
31 KOG4128 Bleomycin hydrolases a 71.5 3.3 7.2E-05 41.4 2.8 76 130-206 63-168 (457)
32 KOG4128 Bleomycin hydrolases a 70.7 0.58 1.2E-05 46.6 -2.6 76 235-312 305-412 (457)
33 cd00044 CysPc Calpains, domain 65.2 24 0.00052 35.2 7.7 27 275-301 235-263 (315)
34 cd02549 Peptidase_C39A A sub-f 64.1 18 0.0004 30.8 5.8 44 239-299 70-114 (141)
35 PF09778 Guanylate_cyc_2: Guan 57.3 31 0.00067 32.6 6.3 57 235-297 112-180 (212)
36 PF12385 Peptidase_C70: Papain 47.4 1.8E+02 0.004 26.3 9.2 37 236-287 98-135 (166)
37 cd00206 snake_toxin Snake toxi 47.2 21 0.00045 26.9 2.9 47 349-400 11-64 (64)
38 PF04885 Stig1: Stigma-specifi 40.5 30 0.00065 30.4 3.2 17 346-362 57-73 (136)
39 PF12662 cEGF: Complement Clr- 33.5 26 0.00057 21.2 1.2 18 390-408 3-21 (24)
40 PF14625 Lustrin_cystein: Lust 31.9 39 0.00084 23.2 2.1 17 346-362 16-32 (45)
41 PF05391 Lsm_interact: Lsm int 31.1 29 0.00063 20.3 1.1 13 80-92 9-21 (21)
42 KOG4702 Uncharacterized conser 29.6 2.7E+02 0.0058 21.6 6.3 33 27-60 29-61 (77)
43 PF01640 Peptidase_C10: Peptid 29.3 2.2E+02 0.0047 26.3 7.2 49 237-310 141-192 (192)
44 PF08139 LPAM_1: Prokaryotic m 28.0 43 0.00092 20.6 1.5 15 1-15 7-21 (25)
45 PF10917 DUF2708: Protein of u 27.6 22 0.00049 24.4 0.2 18 1-18 1-18 (43)
46 PF13333 rve_2: Integrase core 26.6 1.3E+02 0.0028 21.3 4.2 40 36-91 13-52 (52)
47 PF07438 DUF1514: Protein of u 23.7 2E+02 0.0044 21.8 4.7 21 1-21 1-21 (66)
48 smart00230 CysPc Calpain-like 21.5 1.5E+02 0.0032 29.8 4.9 27 275-301 227-255 (318)
49 PF07829 Toxin_14: Alpha-A con 21.4 42 0.00091 20.2 0.5 10 375-384 1-11 (26)
50 PF11912 DUF3430: Protein of u 20.5 68 0.0015 29.7 2.1 16 1-16 1-16 (212)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-80 Score=594.40 Aligned_cols=299 Identities=42% Similarity=0.778 Sum_probs=263.3
Q ss_pred hhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEecccCCCCChHHhhhhhcCcCCCcccccc
Q 013543 23 SDINELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAASIDHDR 102 (441)
Q Consensus 23 ~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~~s~~lg~N~FsDlt~eEf~~~~lg~~~~~~~~~~ 102 (441)
....++|..|+.+|+|+|.+.+|...|+.||+.|+..+++++.....+.++|+|+|||||+|||++++++.+.. .....
T Consensus 65 l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~-~~~~~ 143 (372)
T KOG1542|consen 65 LGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRR-GSKLP 143 (372)
T ss_pred cchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccc-cccCc
Confidence 34588999999999999999999999999999999999999988445999999999999999999999987764 11111
Q ss_pred cCCccccCCCCCCCCCCeeeccCCCCCCccccCCCCchhHHHHHHHHHhHhHHHhcCCcccCCHHHHHhhcCCCCCCCCC
Q 013543 103 RRNASVQSPGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGG 182 (441)
Q Consensus 103 ~~~~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~cGsCwAfa~~~~lE~~~~i~~~~~~~LSeq~lvdc~~~~~~gC~G 182 (441)
....... ......||++||||++|.||||||||+||||||||+++++|++++|++|++++||||||+||+. .+.||+|
T Consensus 144 ~~~~~~~-~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~-~d~gC~G 221 (372)
T KOG1542|consen 144 GDAAEAP-IEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS-CDNGCNG 221 (372)
T ss_pred cccccCc-CCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC-cCCcCCC
Confidence 1111111 1335789999999999999999999999999999999999999999999999999999999996 6899999
Q ss_pred CchHHHHHHHHHhCCcCCCCCCCCCCCCC-CCCCCcCCceeEeecceeecCCChHHHHHHHHH-hCCeEEEEeccccccc
Q 013543 183 GLMDYAYQFVIKNHGIDTEKDYPYRGQAG-QCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVV-AQPVSVGICGSERAFQ 260 (441)
Q Consensus 183 G~~~~a~~~~~~~~Gi~~e~~yPY~~~~~-~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~-~gPV~v~i~~~~~~f~ 260 (441)
|.+..||+|+++.+|+..|++|||++..+ .|...+ ...++.|++|..++. ||++|.+.|. +|||+|+|++ ..+|
T Consensus 222 Gl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~-~~~~v~I~~f~~l~~-nE~~ia~wLv~~GPi~vgiNa--~~mQ 297 (372)
T KOG1542|consen 222 GLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDK-SKIVVSIKDFSMLSN-NEDQIAAWLVTFGPLSVGINA--KPMQ 297 (372)
T ss_pred CChhHHHHHHHHhCCccccccCCccccCCCccccch-hhceEEEeccEecCC-CHHHHHHHHHhcCCeEEEEch--HHHH
Confidence 99999999998999999999999999888 898876 456788999999984 7888888776 5999999996 5799
Q ss_pred cCCCceEeC---CCCCC-CCceEEEEEEeecC-CeeEEEEEcCCCCCCCCCcEEEEEecCCCCcCccCcCccccccc
Q 013543 261 LYSSGIFTG---PCSTS-LDHAVLIVGYDSEN-GVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 332 (441)
Q Consensus 261 ~Y~sGIy~~---~c~~~-~~HaV~IVGyg~~~-g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~ 332 (441)
+|++||+.+ .|+.. ++|||+|||||..+ .++|||||||||++|||+||+|+.|+.| .|||+++++-++
T Consensus 298 ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N----~CGi~~mvss~~ 370 (372)
T KOG1542|consen 298 FYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSN----ACGIADMVSSAA 370 (372)
T ss_pred HhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEecccc----ccccccchhhhh
Confidence 999999977 68775 89999999999987 8999999999999999999999999975 899999987554
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=2.8e-76 Score=592.73 Aligned_cols=300 Identities=37% Similarity=0.693 Sum_probs=250.8
Q ss_pred chhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEecccCCCCChHHhhhhhcCcCCCccccc
Q 013543 22 CSDINELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAASIDHD 101 (441)
Q Consensus 22 ~~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~~s~~lg~N~FsDlt~eEf~~~~lg~~~~~~~~~ 101 (441)
..++..+|++|+++|+|+|.+.+|+.+|+.||++|+++|++||++ +.+|++|+|+|+|||+|||++.+++.........
T Consensus 31 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~-~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~ 109 (348)
T PTZ00203 31 GTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQAR-NPHARFGITKFFDLSEAEFAARYLNGAAYFAAAK 109 (348)
T ss_pred ccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEeccccccCCHHHHHHHhcCCCccccccc
Confidence 567888999999999999999889999999999999999999987 6799999999999999999988764221110000
Q ss_pred ccCCccccCC-CCCCCCCCeeeccCCCCCCccccCCCCchhHHHHHHHHHhHhHHHhcCCcccCCHHHHHhhcCCCCCCC
Q 013543 102 RRRNASVQSP-GNLRDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 180 (441)
Q Consensus 102 ~~~~~~~~~~-~~~~~lP~s~DwR~~g~vtpVkdQg~cGsCwAfa~~~~lE~~~~i~~~~~~~LSeq~lvdc~~~~~~gC 180 (441)
......+... ....+||++||||++|+|+||||||.||||||||+++++|++++|++++.+.||+|||+||+. .+.||
T Consensus 110 ~~~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~-~~~GC 188 (348)
T PTZ00203 110 QHAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDH-VDNGC 188 (348)
T ss_pred ccccccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccC-CCCCC
Confidence 0000111101 123468999999999999999999999999999999999999999999999999999999986 47899
Q ss_pred CCCchHHHHHHHHHh--CCcCCCCCCCCCCCCC---CCCCCcCCceeEeecceeecCCChHHHHHHHHHh-CCeEEEEec
Q 013543 181 GGGLMDYAYQFVIKN--HGIDTEKDYPYRGQAG---QCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICG 254 (441)
Q Consensus 181 ~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~-gPV~v~i~~ 254 (441)
+||++..||+|+.++ +|+.+|++|||.+.++ .|.........+.+++|..++. ++++|+.+|++ |||+|+|++
T Consensus 189 ~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~a 267 (348)
T PTZ00203 189 GGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLAKNGPISIAVDA 267 (348)
T ss_pred CCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHHhCCCEEEEEEh
Confidence 999999999999765 6799999999998766 5864322223457889988875 67889998875 999999997
Q ss_pred cccccccCCCceEeCCCCC-CCCceEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEecCCCCcCccCcCcccccc
Q 013543 255 SERAFQLYSSGIFTGPCST-SLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 331 (441)
Q Consensus 255 ~~~~f~~Y~sGIy~~~c~~-~~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p 331 (441)
. +|++|++|||+. |.. .++|||+|||||+++|++|||||||||++|||+|||||+|+. |.|||++.++..
T Consensus 268 ~--~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~----n~Cgi~~~~~~~ 338 (348)
T PTZ00203 268 S--SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGV----NACLLTGYPVSV 338 (348)
T ss_pred h--hhcCccCceeec-cCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCC----CcccccceEEEE
Confidence 3 799999999985 654 579999999999988999999999999999999999999975 489999666654
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=4.5e-75 Score=600.62 Aligned_cols=304 Identities=37% Similarity=0.676 Sum_probs=257.4
Q ss_pred hhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEecccCCCCChHHhhhhhcCcCCCcccc--
Q 013543 23 SDINELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAASIDH-- 100 (441)
Q Consensus 23 ~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~~s~~lg~N~FsDlt~eEf~~~~lg~~~~~~~~-- 100 (441)
.+....|++|+++|+|+|.+.+|+.+|+.||++|+++|++||++++.+|++|+|+|+|||.|||++.+++........
T Consensus 163 ~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~~ 242 (489)
T PTZ00021 163 LENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSNG 242 (489)
T ss_pred hHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhcccccccccccc
Confidence 344578999999999999999999999999999999999999876789999999999999999999887644210000
Q ss_pred c-ccC----C---ccccCCCCCCCCCCeeeccCCCCCCccccCCCCchhHHHHHHHHHhHhHHHhcCCcccCCHHHHHhh
Q 013543 101 D-RRR----N---ASVQSPGNLRDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDC 172 (441)
Q Consensus 101 ~-~~~----~---~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~cGsCwAfa~~~~lE~~~~i~~~~~~~LSeq~lvdc 172 (441)
. ... . ..+. +.....+|++||||+.|.|+||||||.||||||||++++||++++|+++..+.||+|||+||
T Consensus 243 ~~~~~~~~~~~~~~~~~-~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDC 321 (489)
T PTZ00021 243 KKSPRVINYDDVIKKYK-PKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDC 321 (489)
T ss_pred ccccccccccccccccc-cccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhh
Confidence 0 000 0 0011 11112359999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCchHHHHHHHHHhCCcCCCCCCCCCCC-CCCCCCCcCCceeEeecceeecCCChHHHHHHHHHh-CCeEE
Q 013543 173 DRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQ-AGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSV 250 (441)
Q Consensus 173 ~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~-~~~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~-gPV~v 250 (441)
+. .+.||+||++..|++|+++++||++|++|||.+. .+.|.... ....++|++|..++ +++|+++|+. |||+|
T Consensus 322 s~-~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~-~~~~~~i~~y~~i~---~~~lk~al~~~GPVsv 396 (489)
T PTZ00021 322 SF-KNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDR-CKEKYKIKSYVSIP---EDKFKEAIRFLGPISV 396 (489)
T ss_pred cc-CCCCCCCcchHhhhhhhhhccccCcccccCccCCCCCcccccc-ccccceeeeEEEec---HHHHHHHHHhcCCeEE
Confidence 96 4889999999999999988889999999999987 47897543 23456788998886 4688999985 99999
Q ss_pred EEeccccccccCCCceEeCCCCCCCCceEEEEEEeecCC----------eeEEEEEcCCCCCCCCCcEEEEEecCCCCcC
Q 013543 251 GICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENG----------VDYWIIKNSWGRSWGMNGYMHMQRNTGNSLG 320 (441)
Q Consensus 251 ~i~~~~~~f~~Y~sGIy~~~c~~~~~HaV~IVGyg~~~g----------~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~ 320 (441)
+|++. .+|++|++|||++.|+..++|||+|||||++++ .+|||||||||++|||+|||||+|+.+...|
T Consensus 397 ~i~a~-~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n 475 (489)
T PTZ00021 397 SIAVS-DDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMK 475 (489)
T ss_pred EEEee-cccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCC
Confidence 99986 689999999999889888899999999997642 4799999999999999999999998765567
Q ss_pred ccCcCcccccccc
Q 013543 321 ICGINMLASYPTK 333 (441)
Q Consensus 321 ~CgI~~~~~~p~~ 333 (441)
+|||++.++||+.
T Consensus 476 ~CGI~t~a~yP~~ 488 (489)
T PTZ00021 476 TCSLGTEAYVPLI 488 (489)
T ss_pred CCCCcccceeEec
Confidence 9999999999974
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=6.6e-73 Score=582.65 Aligned_cols=303 Identities=35% Similarity=0.659 Sum_probs=254.6
Q ss_pred chhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEecccCCCCChHHhhhhhcCcCCCcccc-
Q 013543 22 CSDINELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAASIDH- 100 (441)
Q Consensus 22 ~~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~~s~~lg~N~FsDlt~eEf~~~~lg~~~~~~~~- 100 (441)
+.++..+|++|+++|+|+|.+.+|+.+|+.||++|+++|++||. +.+|++|+|+|+|||+|||++++++...+....
T Consensus 119 e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~--~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~ 196 (448)
T PTZ00200 119 EFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG--DEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNS 196 (448)
T ss_pred hHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC--cCCeEEeccccccCCHHHHHHHhccCCCcccccc
Confidence 66778899999999999999999999999999999999999996 468999999999999999998876543221000
Q ss_pred --c------c-cCCccccCC--------CC----CCCCCCeeeccCCCCCCccccCC-CCchhHHHHHHHHHhHhHHHhc
Q 013543 101 --D------R-RRNASVQSP--------GN----LRDVPASIDWRKKGAVTEVKDQA-SCGACWAFSATGAIEGINKIVT 158 (441)
Q Consensus 101 --~------~-~~~~~~~~~--------~~----~~~lP~s~DwR~~g~vtpVkdQg-~cGsCwAfa~~~~lE~~~~i~~ 158 (441)
. + .....+... .. ...+|++||||+.|.|+|||||| .||||||||+++++|++++|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~ 276 (448)
T PTZ00200 197 TSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYR 276 (448)
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHhc
Confidence 0 0 000001000 00 12369999999999999999999 9999999999999999999999
Q ss_pred CCcccCCHHHHHhhcCCCCCCCCCCchHHHHHHHHHhCCcCCCCCCCCCCCCCCCCCCcCCceeEeecceeecCCChHHH
Q 013543 159 GSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQ 238 (441)
Q Consensus 159 ~~~~~LSeq~lvdc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~ 238 (441)
+..+.||+|||+||+. .+.||+||++..|++|+.+ .||++|++|||.+..+.|.... ...+.|.+|..++ ..+.
T Consensus 277 ~~~~~LSeQqLvDC~~-~~~GC~GG~~~~A~~yi~~-~Gi~~e~~YPY~~~~~~C~~~~--~~~~~i~~y~~~~--~~~~ 350 (448)
T PTZ00200 277 DKSVDLSEQELVNCDT-KSQGCSGGYPDTALEYVKN-KGLSSSSDVPYLAKDGKCVVSS--TKKVYIDSYLVAK--GKDV 350 (448)
T ss_pred CCCeecCHHHHhhccC-ccCCCCCCcHHHHHHHHhh-cCccccccCCCCCCCCCCcCCC--CCeeEecceEecC--HHHH
Confidence 9999999999999986 4789999999999999965 4999999999999999997643 2345688887664 3466
Q ss_pred HHHHHHhCCeEEEEeccccccccCCCceEeCCCCCCCCceEEEEEEee--cCCeeEEEEEcCCCCCCCCCcEEEEEecCC
Q 013543 239 LLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDS--ENGVDYWIIKNSWGRSWGMNGYMHMQRNTG 316 (441)
Q Consensus 239 lk~al~~gPV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~HaV~IVGyg~--~~g~~yWivkNSWG~~WGe~GY~~i~r~~~ 316 (441)
+++++..|||+|+|.+. .+|+.|++|||+++|+..++|||+|||||. ++|.+|||||||||++|||+|||||+|+..
T Consensus 351 l~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~ 429 (448)
T PTZ00200 351 LNKSLVISPTVVYIAVS-RELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNE 429 (448)
T ss_pred HHHHHhcCCEEEEeecc-cccccCCCCccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCC
Confidence 77788789999999986 689999999999889888999999999984 468899999999999999999999999742
Q ss_pred CCcCccCcCccccccccC
Q 013543 317 NSLGICGINMLASYPTKT 334 (441)
Q Consensus 317 ~~~~~CgI~~~~~~p~~~ 334 (441)
+.|.|||++.+.||+..
T Consensus 430 -g~n~CGI~~~~~~P~~~ 446 (448)
T PTZ00200 430 -GTDKCGILTVGLTPVFY 446 (448)
T ss_pred -CCCcCCccccceeeEEe
Confidence 55799999999999864
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-68 Score=533.62 Aligned_cols=289 Identities=44% Similarity=0.780 Sum_probs=252.3
Q ss_pred HHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEecccCCCCChHHhhhhhcCcCCCcccccccCCccccCCC
Q 013543 33 CKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSAASIDHDRRRNASVQSPG 112 (441)
Q Consensus 33 ~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~~s~~lg~N~FsDlt~eEf~~~~lg~~~~~~~~~~~~~~~~~~~~ 112 (441)
+.+|.+.|.+..|+.+|+.+|.+|++.|+.||.....+|++++|+|+|+|.+||++.+.+..+..... ..+....
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~~-----~~~~~~~ 104 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIKR-----DKFTEKL 104 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCccccc-----ccccccc
Confidence 67778888777889999999999999999999976899999999999999999999988766544311 1111123
Q ss_pred CCCCCCCeeeccCCC-CCCccccCCCCchhHHHHHHHHHhHhHHHhcC-CcccCCHHHHHhhcCCCCCCCCCCchHHHHH
Q 013543 113 NLRDVPASIDWRKKG-AVTEVKDQASCGACWAFSATGAIEGINKIVTG-SLVSLSEQELIDCDRSYNSGCGGGLMDYAYQ 190 (441)
Q Consensus 113 ~~~~lP~s~DwR~~g-~vtpVkdQg~cGsCwAfa~~~~lE~~~~i~~~-~~~~LSeq~lvdc~~~~~~gC~GG~~~~a~~ 190 (441)
...++|++||||++| .++||||||.||||||||++++||++++|+++ .++.||+|||+||+...+.||+||.+..|++
T Consensus 105 ~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~~~~A~~ 184 (325)
T KOG1543|consen 105 DGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGEPKNAFK 184 (325)
T ss_pred chhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCCHHHHHH
Confidence 356899999999997 55559999999999999999999999999999 8999999999999986688999999999999
Q ss_pred HHHHhCCcCCCCCCCCCCCCCCCCCCcCCceeEeecceeecCCChHHHHHHHHHh-CCeEEEEeccccccccCCCceEeC
Q 013543 191 FVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTG 269 (441)
Q Consensus 191 ~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~-gPV~v~i~~~~~~f~~Y~sGIy~~ 269 (441)
|+.+++++.++++|||.+..+.|..+.. ...+.+.++..++.+ +++|+++|++ |||+|+|++.. +|++|++|||.+
T Consensus 185 yi~~~G~~t~~~~Ypy~~~~~~C~~~~~-~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~-~F~~Y~~GVy~~ 261 (325)
T KOG1543|consen 185 YIKKNGGVTECENYPYIGKDGTCKSNKK-DKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYE-DFSLYKGGVYAE 261 (325)
T ss_pred HHHHhCCCCCCcCCCCcCCCCCccCCCc-cceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehh-hhhhccCceEeC
Confidence 9998855555999999999999998765 566778888888866 9999999986 89999999986 999999999988
Q ss_pred CCCC--CCCceEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEecCCCCcCccCcCccccc-ccc
Q 013543 270 PCST--SLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASY-PTK 333 (441)
Q Consensus 270 ~c~~--~~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~-p~~ 333 (441)
++.+ .++|||+|||||+.++.+|||||||||++|||+|||||.|+.+ .|+|++.++| |++
T Consensus 262 ~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~----~~~I~~~~~~~p~~ 324 (325)
T KOG1543|consen 262 EKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVN----KCGIASEASYGPIK 324 (325)
T ss_pred CCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCC----chhhhcccccCCCC
Confidence 7555 5999999999999667899999999999999999999999986 6999999988 653
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=6.5e-55 Score=420.52 Aligned_cols=209 Identities=32% Similarity=0.659 Sum_probs=177.1
Q ss_pred CCCeeeccCCC----CCCccccCCCCchhHHHHHHHHHhHhHHHhcCC------cccCCHHHHHhhcCCCCCCCCCCchH
Q 013543 117 VPASIDWRKKG----AVTEVKDQASCGACWAFSATGAIEGINKIVTGS------LVSLSEQELIDCDRSYNSGCGGGLMD 186 (441)
Q Consensus 117 lP~s~DwR~~g----~vtpVkdQg~cGsCwAfa~~~~lE~~~~i~~~~------~~~LSeq~lvdc~~~~~~gC~GG~~~ 186 (441)
||++||||+.+ +|+||||||.||+|||||++++||++++|+++. .+.||+|||+||+. .+.||+||++.
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~-~~~GC~GG~~~ 79 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ-YSQGCDGGFPF 79 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC-CCCCCCCCCHH
Confidence 79999999998 999999999999999999999999999998776 68999999999986 57899999999
Q ss_pred HHHHHHHHhCCcCCCCCCCCCC-CCCCCCCCcCCceeEeecceeec----CCChHHHHHHHHHh-CCeEEEEeccccccc
Q 013543 187 YAYQFVIKNHGIDTEKDYPYRG-QAGQCNKQKLNRHIVTIDGYKDV----PENNEKQLLQAVVA-QPVSVGICGSERAFQ 260 (441)
Q Consensus 187 ~a~~~~~~~~Gi~~e~~yPY~~-~~~~C~~~~~~~~~~~i~~y~~v----~~~~~~~lk~al~~-gPV~v~i~~~~~~f~ 260 (441)
.|++|+.+ .|+++|++|||.. ..+.|.........+.+..|..+ ...++++||++|++ |||+|+|++. ++|+
T Consensus 80 ~a~~~~~~-~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F~ 157 (243)
T cd02621 80 LVGKFAED-FGIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDFD 157 (243)
T ss_pred HHHHHHHh-cCcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-cccc
Confidence 99999865 4999999999998 67789754312222333444333 12468899999875 9999999986 6899
Q ss_pred cCCCceEeCC-----CCC---------CCCceEEEEEEeecC--CeeEEEEEcCCCCCCCCCcEEEEEecCCCCcCccCc
Q 013543 261 LYSSGIFTGP-----CST---------SLDHAVLIVGYDSEN--GVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGI 324 (441)
Q Consensus 261 ~Y~sGIy~~~-----c~~---------~~~HaV~IVGyg~~~--g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI 324 (441)
+|++|||+.. |.. .++|||+|||||+++ |++|||||||||++|||+|||||+|+. +.|||
T Consensus 158 ~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~----~~cgi 233 (243)
T cd02621 158 FYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT----NECGI 233 (243)
T ss_pred ccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC----cccCc
Confidence 9999999764 532 479999999999886 899999999999999999999999975 48999
Q ss_pred Cccccccc
Q 013543 325 NMLASYPT 332 (441)
Q Consensus 325 ~~~~~~p~ 332 (441)
++.+.+..
T Consensus 234 ~~~~~~~~ 241 (243)
T cd02621 234 ESQAVFAY 241 (243)
T ss_pred ccceEeec
Confidence 99886643
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=4.1e-54 Score=413.87 Aligned_cols=210 Identities=29% Similarity=0.632 Sum_probs=179.3
Q ss_pred CCCeeeccCCC---CCCccccCC---CCchhHHHHHHHHHhHhHHHhcC---CcccCCHHHHHhhcCCCCCCCCCCchHH
Q 013543 117 VPASIDWRKKG---AVTEVKDQA---SCGACWAFSATGAIEGINKIVTG---SLVSLSEQELIDCDRSYNSGCGGGLMDY 187 (441)
Q Consensus 117 lP~s~DwR~~g---~vtpVkdQg---~cGsCwAfa~~~~lE~~~~i~~~---~~~~LSeq~lvdc~~~~~~gC~GG~~~~ 187 (441)
||++||||+++ +|+|||||| .||||||||++++||+++.|+++ ..+.||+|||+||+. +.||+||++..
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~--~~gC~GG~~~~ 78 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG--GGSCHGGDPGG 78 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC--CCCccCcCHHH
Confidence 69999999988 999999998 89999999999999999998875 357899999999986 78999999999
Q ss_pred HHHHHHHhCCcCCCCCCCCCCCCCCCCCCc--------------CCceeEeecceeecCCChHHHHHHHHH-hCCeEEEE
Q 013543 188 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQK--------------LNRHIVTIDGYKDVPENNEKQLLQAVV-AQPVSVGI 252 (441)
Q Consensus 188 a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~--------------~~~~~~~i~~y~~v~~~~~~~lk~al~-~gPV~v~i 252 (441)
|++|+.++ |+++|++|||.+....|.... .....+.+++|..++ ++++||++|. +|||+|+|
T Consensus 79 a~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~i 155 (239)
T cd02698 79 VYEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCGI 155 (239)
T ss_pred HHHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEEE
Confidence 99999764 999999999998776665311 012345677787775 4678888876 59999999
Q ss_pred eccccccccCCCceEeCC-CCCCCCceEEEEEEeecC-CeeEEEEEcCCCCCCCCCcEEEEEecC-CCCcCccCcCcccc
Q 013543 253 CGSERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSEN-GVDYWIIKNSWGRSWGMNGYMHMQRNT-GNSLGICGINMLAS 329 (441)
Q Consensus 253 ~~~~~~f~~Y~sGIy~~~-c~~~~~HaV~IVGyg~~~-g~~yWivkNSWG~~WGe~GY~~i~r~~-~~~~~~CgI~~~~~ 329 (441)
.+. .+|+.|++|||+.. |...++|||+|||||+++ |++|||||||||++|||+|||||+|+. ....++|||++.+.
T Consensus 156 ~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~ 234 (239)
T cd02698 156 MAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCA 234 (239)
T ss_pred Eec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceE
Confidence 987 58999999999764 455689999999999876 999999999999999999999999987 22234899999999
Q ss_pred ccc
Q 013543 330 YPT 332 (441)
Q Consensus 330 ~p~ 332 (441)
|+.
T Consensus 235 ~~~ 237 (239)
T cd02698 235 WAD 237 (239)
T ss_pred EEe
Confidence 875
No 8
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=7.7e-54 Score=411.25 Aligned_cols=205 Identities=33% Similarity=0.645 Sum_probs=172.6
Q ss_pred CCeeeccCC--CC--CCccccCCCCchhHHHHHHHHHhHhHHHhcC--CcccCCHHHHHhhcCCCCCCCCCCchHHHHHH
Q 013543 118 PASIDWRKK--GA--VTEVKDQASCGACWAFSATGAIEGINKIVTG--SLVSLSEQELIDCDRSYNSGCGGGLMDYAYQF 191 (441)
Q Consensus 118 P~s~DwR~~--g~--vtpVkdQg~cGsCwAfa~~~~lE~~~~i~~~--~~~~LSeq~lvdc~~~~~~gC~GG~~~~a~~~ 191 (441)
|++||||++ ++ |+||+|||.||+|||||++++||+++.|+++ +.+.||+|||+||+...+.||+||++..|++|
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~ 80 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY 80 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 889999997 45 4599999999999999999999999999888 77899999999999744789999999999999
Q ss_pred HHHhCCcCCCCCCCCCCCCCC------------------CCCCcC---CceeEeecceeecCCChHHHHHHHHHh-CCeE
Q 013543 192 VIKNHGIDTEKDYPYRGQAGQ------------------CNKQKL---NRHIVTIDGYKDVPENNEKQLLQAVVA-QPVS 249 (441)
Q Consensus 192 ~~~~~Gi~~e~~yPY~~~~~~------------------C~~~~~---~~~~~~i~~y~~v~~~~~~~lk~al~~-gPV~ 249 (441)
+.++ |+++|++|||.+.... |..... ....+.+..+..+. .++++||.+|.+ |||+
T Consensus 81 i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv~ 158 (236)
T cd02620 81 LTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGPVQ 158 (236)
T ss_pred HHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCCeE
Confidence 9765 9999999999876543 332211 11223455555554 467899999875 9999
Q ss_pred EEEeccccccccCCCceEeCCCCC-CCCceEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEecCCCCcCccCcCccc
Q 013543 250 VGICGSERAFQLYSSGIFTGPCST-SLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLA 328 (441)
Q Consensus 250 v~i~~~~~~f~~Y~sGIy~~~c~~-~~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~ 328 (441)
|+|.+. ++|+.|++|||+..+.. .++|||+|||||+++|++|||||||||++|||+|||||+|+. +.|||++.+
T Consensus 159 v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~----~~cgi~~~~ 233 (236)
T cd02620 159 AAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGS----NECGIESEV 233 (236)
T ss_pred EEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccC----cccccccce
Confidence 999985 78999999999866554 468999999999989999999999999999999999999975 489999876
Q ss_pred c
Q 013543 329 S 329 (441)
Q Consensus 329 ~ 329 (441)
+
T Consensus 234 ~ 234 (236)
T cd02620 234 V 234 (236)
T ss_pred e
Confidence 5
No 9
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=2.2e-53 Score=399.98 Aligned_cols=207 Identities=56% Similarity=1.079 Sum_probs=185.8
Q ss_pred CCeeeccCCCCCCccccCCCCchhHHHHHHHHHhHhHHHhcCCcccCCHHHHHhhcCCCCCCCCCCchHHHHHHHHHhCC
Q 013543 118 PASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHG 197 (441)
Q Consensus 118 P~s~DwR~~g~vtpVkdQg~cGsCwAfa~~~~lE~~~~i~~~~~~~LSeq~lvdc~~~~~~gC~GG~~~~a~~~~~~~~G 197 (441)
|++||||+.+.++||+|||.||+|||||++++||++++++++...+||+|+|++|....+.+|.||+...|++++. +.|
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~-~~G 79 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVK-NGG 79 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHH-HCC
Confidence 7899999999999999999999999999999999999999998899999999999874478999999999999775 569
Q ss_pred cCCCCCCCCCCCCCCCCCCcCCceeEeecceeecCCChHHHHHHHHHh-CCeEEEEeccccccccCCCceEeCCCC--CC
Q 013543 198 IDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGPCS--TS 274 (441)
Q Consensus 198 i~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~-gPV~v~i~~~~~~f~~Y~sGIy~~~c~--~~ 274 (441)
+++|++|||......|.... ....++|.+|..+...++++||++|++ |||+++|.+. ++|+.|++|||+.++. ..
T Consensus 80 i~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~Giy~~~~~~~~~ 157 (210)
T cd02248 80 LASESDYPYTGKDGTCKYNS-SKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGGIYSGPCCSNTN 157 (210)
T ss_pred cCccccCCccCCCCCccCCC-CcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCCceeCCCCCCCc
Confidence 99999999999888897654 345678999999987678899999986 8999999986 6899999999976543 46
Q ss_pred CCceEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEecCCCCcCccCcCcccccc
Q 013543 275 LDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 331 (441)
Q Consensus 275 ~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p 331 (441)
++|||+|||||++.+++|||||||||++||++|||||+|+. +.|||+..+.||
T Consensus 158 ~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~----~~cgi~~~~~~~ 210 (210)
T cd02248 158 LNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGS----NLCGIASYASYP 210 (210)
T ss_pred CCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCC----CccCceeeeecC
Confidence 79999999999998999999999999999999999999986 489999888776
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=9.3e-53 Score=396.55 Aligned_cols=213 Identities=49% Similarity=0.899 Sum_probs=184.6
Q ss_pred CCCeeeccCC-CCCCccccCCCCchhHHHHHHHHHhHhHHHhc-CCcccCCHHHHHhhcCCCCCCCCCCchHHHHHHHHH
Q 013543 117 VPASIDWRKK-GAVTEVKDQASCGACWAFSATGAIEGINKIVT-GSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIK 194 (441)
Q Consensus 117 lP~s~DwR~~-g~vtpVkdQg~cGsCwAfa~~~~lE~~~~i~~-~~~~~LSeq~lvdc~~~~~~gC~GG~~~~a~~~~~~ 194 (441)
||++||||+. +.++||+|||.||+|||||+++++|++++++. ...++||+|+|++|....+.+|+||++..|++++.+
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~ 80 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN 80 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence 7999999998 48999999999999999999999999999998 788999999999999744789999999999999988
Q ss_pred hCCcCCCCCCCCCCCC-CCCCCCcCCceeEeecceeecCCChHHHHHHHHHh-CCeEEEEeccccccccCCCceEeCC-C
Q 013543 195 NHGIDTEKDYPYRGQA-GQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGP-C 271 (441)
Q Consensus 195 ~~Gi~~e~~yPY~~~~-~~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~-gPV~v~i~~~~~~f~~Y~sGIy~~~-c 271 (441)
+.|+++|++|||.... ..|.........+++..|..+...++++||++|.+ |||+++|.+...+|+.|++|||+.+ +
T Consensus 81 ~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~ 160 (219)
T PF00112_consen 81 NNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDC 160 (219)
T ss_dssp HTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSS
T ss_pred cCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeecccc
Confidence 5799999999999877 68887643333578889998887779999999987 9999999998547999999999774 5
Q ss_pred CC-CCCceEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEecCCCCcCccCcCccccccc
Q 013543 272 ST-SLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 332 (441)
Q Consensus 272 ~~-~~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~ 332 (441)
.. .++|||+|||||++.+++|||||||||++||++|||||+|+.+ ++|||+..++||+
T Consensus 161 ~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~---~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 161 SNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYN---NECGIESQAVYPI 219 (219)
T ss_dssp SSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSS---SGGGTTSSEEEEE
T ss_pred ccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCC---CcCccCceeeecC
Confidence 53 6799999999999999999999999999999999999999865 4899999999996
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=6.9e-51 Score=425.30 Aligned_cols=220 Identities=22% Similarity=0.474 Sum_probs=178.1
Q ss_pred CCCCCCeeeccCCC---CCCccccCCC---CchhHHHHHHHHHhHhHHHhcC------CcccCCHHHHHhhcCCCCCCCC
Q 013543 114 LRDVPASIDWRKKG---AVTEVKDQAS---CGACWAFSATGAIEGINKIVTG------SLVSLSEQELIDCDRSYNSGCG 181 (441)
Q Consensus 114 ~~~lP~s~DwR~~g---~vtpVkdQg~---cGsCwAfa~~~~lE~~~~i~~~------~~~~LSeq~lvdc~~~~~~gC~ 181 (441)
..+||++||||++| +|+||||||. ||||||||++++||++++|+++ ..+.||+|||+||+. +++||+
T Consensus 202 ~~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~-~n~GCd 280 (548)
T PTZ00364 202 GDPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ-YGQGCA 280 (548)
T ss_pred ccCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC-CCCCCC
Confidence 35799999999987 7999999999 9999999999999999999873 468899999999986 689999
Q ss_pred CCchHHHHHHHHHhCCcCCCCCC--CCCCCCC---CCCCCcCCce-----eEeecceeecCCChHHHHHHHHH-hCCeEE
Q 013543 182 GGLMDYAYQFVIKNHGIDTEKDY--PYRGQAG---QCNKQKLNRH-----IVTIDGYKDVPENNEKQLLQAVV-AQPVSV 250 (441)
Q Consensus 182 GG~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~---~C~~~~~~~~-----~~~i~~y~~v~~~~~~~lk~al~-~gPV~v 250 (441)
||++..|++|+.+ .||++|++| ||.+.++ .|........ ...|.+|..+. +++++|+.+|+ +|||+|
T Consensus 281 GG~p~~A~~yi~~-~GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPVsV 358 (548)
T PTZ00364 281 GGFPEEVGKFAET-FGILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPVPA 358 (548)
T ss_pred CCcHHHHHHHHHh-CCcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCeEE
Confidence 9999999999965 599999999 9987655 4865432211 12344555444 46778888887 499999
Q ss_pred EEeccccccccCCCceEeCC---------C-----------CCCCCceEEEEEEee-cCCeeEEEEEcCCCC--CCCCCc
Q 013543 251 GICGSERAFQLYSSGIFTGP---------C-----------STSLDHAVLIVGYDS-ENGVDYWIIKNSWGR--SWGMNG 307 (441)
Q Consensus 251 ~i~~~~~~f~~Y~sGIy~~~---------c-----------~~~~~HaV~IVGyg~-~~g~~yWivkNSWG~--~WGe~G 307 (441)
+|++. .+|+.|++|||.+. | ...++|||+|||||+ ++|.+|||||||||+ +|||+|
T Consensus 359 aIda~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~G 437 (548)
T PTZ00364 359 SVYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGG 437 (548)
T ss_pred EEEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCC
Confidence 99997 68999999998521 1 134799999999996 578899999999999 999999
Q ss_pred EEEEEecCCCCcCccCcCccccccccCCCCCCCCC
Q 013543 308 YMHMQRNTGNSLGICGINMLASYPTKTGQNPPPSP 342 (441)
Q Consensus 308 Y~~i~r~~~~~~~~CgI~~~~~~p~~~~~~pp~~~ 342 (441)
||||+|+.+ .|||++.++.... .|.|+...
T Consensus 438 YfRI~RG~N----~CGIes~~v~~~~-~~~~~~~~ 467 (548)
T PTZ00364 438 TRKIARGVN----AYNIESEVVVMYW-APYPDVLH 467 (548)
T ss_pred eEEEEcCCC----cccccceeeeeee-ecCCCccC
Confidence 999999864 8999998773332 34444333
No 12
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=1.6e-50 Score=426.47 Aligned_cols=213 Identities=27% Similarity=0.565 Sum_probs=175.3
Q ss_pred CCCCCCeeeccCC----CCCCccccCCCCchhHHHHHHHHHhHhHHHhcCC-----c-----ccCCHHHHHhhcCCCCCC
Q 013543 114 LRDVPASIDWRKK----GAVTEVKDQASCGACWAFSATGAIEGINKIVTGS-----L-----VSLSEQELIDCDRSYNSG 179 (441)
Q Consensus 114 ~~~lP~s~DwR~~----g~vtpVkdQg~cGsCwAfa~~~~lE~~~~i~~~~-----~-----~~LSeq~lvdc~~~~~~g 179 (441)
..+||++||||+. +.++||+|||.||||||||++++||++++|+++. . ..||+|+|+||+. ++.|
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~-~nqG 456 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF-YDQG 456 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC-CCCC
Confidence 4689999999985 6799999999999999999999999999998642 1 2799999999987 6899
Q ss_pred CCCCchHHHHHHHHHhCCcCCCCCCCCCCCCCCCCCCcCC--------------------------------------ce
Q 013543 180 CGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLN--------------------------------------RH 221 (441)
Q Consensus 180 C~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~--------------------------------------~~ 221 (441)
|+||++..|++|+.+. ||++|++|||.+..+.|...... ..
T Consensus 457 C~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (693)
T PTZ00049 457 CNGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPA 535 (693)
T ss_pred cCCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999655 99999999999888888642110 01
Q ss_pred eEeecceeecC-------CChHHHHHHHHH-hCCeEEEEeccccccccCCCceEeC-------CCCC-------------
Q 013543 222 IVTIDGYKDVP-------ENNEKQLLQAVV-AQPVSVGICGSERAFQLYSSGIFTG-------PCST------------- 273 (441)
Q Consensus 222 ~~~i~~y~~v~-------~~~~~~lk~al~-~gPV~v~i~~~~~~f~~Y~sGIy~~-------~c~~------------- 273 (441)
.+.++.|..+. .+++++|+.+|+ +|||+|+|++. .+|++|++|||+. .|..
T Consensus 536 r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G 614 (693)
T PTZ00049 536 RWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITG 614 (693)
T ss_pred ceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCccccccccccccc
Confidence 12234444442 246788888887 59999999986 6899999999974 2532
Q ss_pred --CCCceEEEEEEeec--CCe--eEEEEEcCCCCCCCCCcEEEEEecCCCCcCccCcCcccccccc
Q 013543 274 --SLDHAVLIVGYDSE--NGV--DYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 333 (441)
Q Consensus 274 --~~~HaV~IVGyg~~--~g~--~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~~ 333 (441)
.++|||+|||||.+ +|+ +|||||||||++||++|||||+|+.+ .|||++.++|+..
T Consensus 615 ~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N----~CGIEs~a~~~~p 676 (693)
T PTZ00049 615 WEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKN----FSGIESQSLFIEP 676 (693)
T ss_pred cccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCC----ccCCccceeEEee
Confidence 36999999999975 464 79999999999999999999999864 8999999998763
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=1.5e-47 Score=351.08 Aligned_cols=166 Identities=60% Similarity=1.116 Sum_probs=147.7
Q ss_pred CCCeeeccCCCCCCccccCCCCchhHHHHHHHHHhHhHHHhcCCcccCCHHHHHhhcCCCCCCCCCCchHHHHHHHHHhC
Q 013543 117 VPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNH 196 (441)
Q Consensus 117 lP~s~DwR~~g~vtpVkdQg~cGsCwAfa~~~~lE~~~~i~~~~~~~LSeq~lvdc~~~~~~gC~GG~~~~a~~~~~~~~ 196 (441)
||++||||+.++++||+|||.||+|||||+++++|++++++++..++||+|+|++|....+.||.||++..|++|+.++.
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~ 80 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG 80 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999998999999999999974356999999999999997766
Q ss_pred CcCCCCCCCCCCCCCCCCCCcCCceeEeecceeecCCChHHHHHHHHHhCCeEEEEeccccccccCCCceEeC-CCCC-C
Q 013543 197 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTG-PCST-S 274 (441)
Q Consensus 197 Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~gPV~v~i~~~~~~f~~Y~sGIy~~-~c~~-~ 274 (441)
|+++|++|||.. ++.+.+ .+|+.|++|||+. +|.. .
T Consensus 81 Gi~~e~~~PY~~----------------------------------------~~~~~~--~~f~~Y~~Gi~~~~~~~~~~ 118 (174)
T smart00645 81 GLETESCYPYTG----------------------------------------SVAIDA--SDFQFYKSGIYDHPGCGSGT 118 (174)
T ss_pred CcccccccCccc----------------------------------------EEEEEc--ccccCCcCeEECCCCCCCCc
Confidence 899999999976 455554 3599999999987 4765 3
Q ss_pred CCceEEEEEEeec-CCeeEEEEEcCCCCCCCCCcEEEEEecCCCCcCccCcCcc
Q 013543 275 LDHAVLIVGYDSE-NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINML 327 (441)
Q Consensus 275 ~~HaV~IVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~ 327 (441)
++|+|+|||||.+ +|++|||||||||+.|||+|||||+|+.. +.|||+..
T Consensus 119 ~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~---~~c~i~~~ 169 (174)
T smart00645 119 LDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKN---NECGIEAS 169 (174)
T ss_pred ccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCC---CccCceee
Confidence 7999999999987 88999999999999999999999999752 48999543
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=2.7e-44 Score=339.53 Aligned_cols=194 Identities=36% Similarity=0.561 Sum_probs=166.8
Q ss_pred eeeccCCCCCCccccCCCCchhHHHHHHHHHhHhHHHhcC--CcccCCHHHHHhhcCCC----CCCCCCCchHHHHHHHH
Q 013543 120 SIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTG--SLVSLSEQELIDCDRSY----NSGCGGGLMDYAYQFVI 193 (441)
Q Consensus 120 s~DwR~~g~vtpVkdQg~cGsCwAfa~~~~lE~~~~i~~~--~~~~LSeq~lvdc~~~~----~~gC~GG~~~~a~~~~~ 193 (441)
.+|||+.+ ++||+|||.||+|||||+++++|+++.+++. +.++||+|+|++|.... ..+|.||.+..++.+++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999988 9999999999999999999999999999987 78999999999998743 36999999999998444
Q ss_pred HhCCcCCCCCCCCCCCCCCCCCC---cCCceeEeecceeecCCChHHHHHHHHHh-CCeEEEEeccccccccCCCceEe-
Q 013543 194 KNHGIDTEKDYPYRGQAGQCNKQ---KLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFT- 268 (441)
Q Consensus 194 ~~~Gi~~e~~yPY~~~~~~C~~~---~~~~~~~~i~~y~~v~~~~~~~lk~al~~-gPV~v~i~~~~~~f~~Y~sGIy~- 268 (441)
++.|+++|++|||......|... ......+++..|..+...++++||++|.+ |||+++|.+. ..|..|++|+|.
T Consensus 80 ~~~Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~~~~~ 158 (223)
T cd02619 80 ALKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEGIIYE 158 (223)
T ss_pred HHcCCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCccccc
Confidence 56699999999999987776532 22334577889988887778999999987 8999999986 789999999862
Q ss_pred -----CCC-CCCCCceEEEEEEeecC--CeeEEEEEcCCCCCCCCCcEEEEEecC
Q 013543 269 -----GPC-STSLDHAVLIVGYDSEN--GVDYWIIKNSWGRSWGMNGYMHMQRNT 315 (441)
Q Consensus 269 -----~~c-~~~~~HaV~IVGyg~~~--g~~yWivkNSWG~~WGe~GY~~i~r~~ 315 (441)
..+ ...++|||+|||||++. +++|||||||||++||++||+||+++.
T Consensus 159 ~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 159 EIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred cccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 122 23579999999999987 899999999999999999999999975
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=4.4e-42 Score=371.77 Aligned_cols=199 Identities=23% Similarity=0.435 Sum_probs=156.5
Q ss_pred CCccccCCCCchhHHHHHHHHHhHhHHHhcCCcccCCHHHHHhhcCC-CCCCCCCCchHH-HHHHHHHhCCcCCCCCCCC
Q 013543 129 VTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRS-YNSGCGGGLMDY-AYQFVIKNHGIDTEKDYPY 206 (441)
Q Consensus 129 vtpVkdQg~cGsCwAfa~~~~lE~~~~i~~~~~~~LSeq~lvdc~~~-~~~gC~GG~~~~-a~~~~~~~~Gi~~e~~yPY 206 (441)
..||||||.||+|||||+++++|++++|+++..+.||+|+|+||+.. .+.||.||+... ++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 57899999999999999999999999999999999999999999863 367999997554 5588877777999999999
Q ss_pred CC--CCCCCCCCcC-----------------CceeEeecceeecCCC----h----HHHHHHHHHh-CCeEEEEeccccc
Q 013543 207 RG--QAGQCNKQKL-----------------NRHIVTIDGYKDVPEN----N----EKQLLQAVVA-QPVSVGICGSERA 258 (441)
Q Consensus 207 ~~--~~~~C~~~~~-----------------~~~~~~i~~y~~v~~~----~----~~~lk~al~~-gPV~v~i~~~~~~ 258 (441)
.+ ..+.|+.... ....+.+.+|..+... + +++|+++|++ |||+|+|++. +
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--d 701 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--N 701 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--h
Confidence 75 4567864321 0112345566655432 1 3678888886 9999999974 6
Q ss_pred cccCC-CceE-eCCCCC-CCCceEEEEEEeec-----CCeeEEEEEcCCCCCCCCCcEEEEEecCCCCcCccCcCccccc
Q 013543 259 FQLYS-SGIF-TGPCST-SLDHAVLIVGYDSE-----NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASY 330 (441)
Q Consensus 259 f~~Y~-sGIy-~~~c~~-~~~HaV~IVGyg~~-----~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~ 330 (441)
|+.|. +||| ...|+. .++|||+|||||.+ .|++|||||||||+.|||+|||||.|... +.|||+....+
T Consensus 702 f~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~---n~CGin~i~t~ 778 (1004)
T PTZ00462 702 VLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGP---SHCEDNFIHSV 778 (1004)
T ss_pred HHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCC---CCCccchheee
Confidence 88884 8986 446874 57999999999964 25789999999999999999999999532 47888654444
Q ss_pred cc
Q 013543 331 PT 332 (441)
Q Consensus 331 p~ 332 (441)
|+
T Consensus 779 ~~ 780 (1004)
T PTZ00462 779 VI 780 (1004)
T ss_pred ee
Confidence 44
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=3.4e-41 Score=321.02 Aligned_cols=264 Identities=25% Similarity=0.432 Sum_probs=206.2
Q ss_pred HHHHHhccCCCCcEEEecc-cCCCCChHHhhhhhcCcCCCcccccccCCccccCCCCCCCCCCeeeccCC--CCCCcccc
Q 013543 58 AFVTQHNNMGNSSFTLSLN-AFADLTHQEFKASFLGFSAASIDHDRRRNASVQSPGNLRDVPASIDWRKK--GAVTEVKD 134 (441)
Q Consensus 58 ~~I~~~N~~~~~s~~lg~N-~FsDlt~eEf~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~--g~vtpVkd 134 (441)
.+|++.|.- +.+|+++.- +|..||.++-.+..||..++...... .+..+.......+||+.||.|++ +++.++.|
T Consensus 151 d~iE~in~G-~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~n-MNEi~~~l~p~~~LPE~F~As~KWp~liH~plD 228 (470)
T KOG1544|consen 151 DMIEAINQG-NYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMN-MNEIYTVLNPGEVLPEAFEASEKWPNLIHEPLD 228 (470)
T ss_pred HHHHHHhcC-CccccccchhhhhcccccccceeeecccCchhhhhh-HHhHhhccCcccccchhhhhhhcCCccccCccc
Confidence 478888875 888888764 89999999988888888766543222 22223323345789999999997 79999999
Q ss_pred CCCCchhHHHHHHHHHhHhHHHhcCC--cccCCHHHHHhhcCCCCCCCCCCchHHHHHHHHHhCCcCCCCCCCCCCCC--
Q 013543 135 QASCGACWAFSATGAIEGINKIVTGS--LVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQA-- 210 (441)
Q Consensus 135 Qg~cGsCwAfa~~~~lE~~~~i~~~~--~~~LSeq~lvdc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~-- 210 (441)
||+|++.|||+++++...+++|.... ...||+|+|++|.....+||.||+.+.|+=|+.+. |++...+|||...+
T Consensus 229 QgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ~~ 307 (470)
T KOG1544|consen 229 QGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQAG 307 (470)
T ss_pred cCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecc-cccccccccccCCCCC
Confidence 99999999999999999999988653 45799999999998668899999999999998665 99999999996521
Q ss_pred --CC------------------CCCCcCC-ceeEeecceeecCCChHHHHHHHHHhCCeEEEEeccccccccCCCceEeC
Q 013543 211 --GQ------------------CNKQKLN-RHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTG 269 (441)
Q Consensus 211 --~~------------------C~~~~~~-~~~~~i~~y~~v~~~~~~~lk~al~~gPV~v~i~~~~~~f~~Y~sGIy~~ 269 (441)
+. |+....+ ..+++.+.-.+|..+.++.+++++.+|||-+.|.+ +++|..|++|||..
T Consensus 308 ~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~V-HEDFF~YkgGiY~H 386 (470)
T KOG1544|consen 308 PAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEV-HEDFFLYKGGIYSH 386 (470)
T ss_pred CCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhh-hhhhhhhccceeec
Confidence 22 4333222 24555555556665555555556667999876655 79999999999976
Q ss_pred CCCC---------CCCceEEEEEEeecCC-----eeEEEEEcCCCCCCCCCcEEEEEecCCCCcCccCcCcccc
Q 013543 270 PCST---------SLDHAVLIVGYDSENG-----VDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLAS 329 (441)
Q Consensus 270 ~c~~---------~~~HaV~IVGyg~~~g-----~~yWivkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~ 329 (441)
...+ .+.|+|.|.|||++.+ .+|||..||||+.|||+|||||.|+.| .|.|+++..
T Consensus 387 ~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvN----ecdIEsfvI 456 (470)
T KOG1544|consen 387 TPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVN----ECDIESFVI 456 (470)
T ss_pred cccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEecccc----chhhhHhhh
Confidence 4332 4679999999998733 579999999999999999999999986 799998754
No 17
>KOG4296 consensus Epithelin/granulin [Signal transduction mechanisms]
Probab=99.96 E-value=2.1e-30 Score=199.89 Aligned_cols=74 Identities=43% Similarity=1.064 Sum_probs=72.9
Q ss_pred CCCceeeCCCCccccccCCCCccccccccCCCCceecCCCCcccCCCCCcccCCCCceecCCCCCchhHHHHhhh
Q 013543 349 CSLLTYCAAGETCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQCLTRLTGNVTAAEAIEMR 423 (441)
Q Consensus 349 c~~~~~c~~~~tcc~~~~~~~~~~~~~cc~~~~a~cc~d~~~ccp~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~ 423 (441)
||.+++||+++||||+.+++|+|++|||||+++||||+|+.||||||||+||+.+++|++.+ ++|+++++++|+
T Consensus 1 Cd~~~~Cp~~~TCCcl~e~~~~cfsWgCCp~e~A~CCdD~~hCCPh~ypVCD~~~~~Cl~k~-ns~~sikal~kk 74 (90)
T KOG4296|consen 1 CDSYTECPDSETCCCLYEYGGYCFSWGCCPMESAVCCDDRSHCCPHGYPVCDLQRSTCLMKK-NSPTSIKALKKK 74 (90)
T ss_pred CCcceecCCCCceEEeeecCceeceeccccCCcceeecCCCccCCCCCcccccccceeeccC-CCcccchhhccC
Confidence 88999999999999999999999999999999999999999999999999999999999999 999999999998
No 18
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.4e-29 Score=241.88 Aligned_cols=195 Identities=28% Similarity=0.416 Sum_probs=131.3
Q ss_pred CCCCCeeeccCCCCCCccccCCCCchhHHHHHHHHHhHhHHHhcCCcccCCHHHHHh-----hcCCCCCC-CCCCchHHH
Q 013543 115 RDVPASIDWRKKGAVTEVKDQASCGACWAFSATGAIEGINKIVTGSLVSLSEQELID-----CDRSYNSG-CGGGLMDYA 188 (441)
Q Consensus 115 ~~lP~s~DwR~~g~vtpVkdQg~cGsCwAfa~~~~lE~~~~i~~~~~~~LSeq~lvd-----c~~~~~~g-C~GG~~~~a 188 (441)
..+|+.||||+.|.|+||||||.+|+||||++++++|+.+.-.. ..++|+..+.. +......+ -+||....+
T Consensus 97 ~s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~ 174 (372)
T COG4870 97 ASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMS 174 (372)
T ss_pred ccchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCccccc
Confidence 45899999999999999999999999999999999998865433 34455543332 22211121 337888888
Q ss_pred HHHHHHhCCcCCCCCCCCCCCCCCCCCCcCCceeEeecceeecCCC----hHHHHHHHHHh-CCeE--EEEecccccccc
Q 013543 189 YQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPEN----NEKQLLQAVVA-QPVS--VGICGSERAFQL 261 (441)
Q Consensus 189 ~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~----~~~~lk~al~~-gPV~--v~i~~~~~~f~~ 261 (441)
..|+.+..|.+.|.+-||......|.......+.. ..-..++.. +...|++++.. |-++ +.|++. .+..
T Consensus 175 ~a~l~e~sgpv~et~d~y~~~s~~~~~~~p~~k~~--~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~--~~~~ 250 (372)
T COG4870 175 AAYLTEWSGPVYETDDPYSENSYFSPTNLPVTKHV--QEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDAT--NSLG 250 (372)
T ss_pred cccccccCCcchhhcCccccccccCCcCCchhhcc--ccceecccchhhhcccchHHHHhhhccccceeEEecc--cccc
Confidence 88888899999999999988777666543221111 111112111 12235565553 5433 335543 2222
Q ss_pred CCCceEeCCCCCCCCceEEEEEEeec----------CCeeEEEEEcCCCCCCCCCcEEEEEecC
Q 013543 262 YSSGIFTGPCSTSLDHAVLIVGYDSE----------NGVDYWIIKNSWGRSWGMNGYMHMQRNT 315 (441)
Q Consensus 262 Y~sGIy~~~c~~~~~HaV~IVGyg~~----------~g~~yWivkNSWG~~WGe~GY~~i~r~~ 315 (441)
..-+.|........+|||+||||||. .|.++||||||||++||++|||||++..
T Consensus 251 ~~~~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~y 314 (372)
T COG4870 251 ICIPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYY 314 (372)
T ss_pred cccCCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeee
Confidence 22334433333678999999999986 3577999999999999999999999975
No 19
>smart00277 GRAN Granulin.
Probab=99.86 E-value=1.5e-22 Score=144.42 Aligned_cols=51 Identities=41% Similarity=1.013 Sum_probs=48.1
Q ss_pred CCceeeCCCCccccccCCCCccccccccCCCCceecCCCCcccCCCCCcccCCCCce
Q 013543 350 SLLTYCAAGETCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQC 406 (441)
Q Consensus 350 ~~~~~c~~~~tcc~~~~~~~~~~~~~cc~~~~a~cc~d~~~ccp~~~~~c~~~~~~c 406 (441)
|++++||+++|||++.++. ||||||++||||+|+.||||+|| +||++.++|
T Consensus 1 d~~~~Cp~~~TCC~~~~g~-----wgCCP~~~AvCC~D~~hCCP~gy-~Cd~~~~~C 51 (51)
T smart00277 1 DSATSCPDGTTCCLLPQGS-----WGCCPLPNAVCCEDGIHCCPHGY-HCDTDGGTC 51 (51)
T ss_pred CCcccCCCCCeEcCCCCCC-----EECCCCCCCCccCCCCccCCCCC-eeCCCCCcC
Confidence 5688999999999999955 99999999999999999999999 999999887
No 20
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.86 E-value=2.7e-21 Score=198.85 Aligned_cols=179 Identities=25% Similarity=0.396 Sum_probs=126.1
Q ss_pred CccccCCCCchhHHHHHHHHHhHhHHHh-cCCcccCCHHHHHhhcC--------------------C-------CCCCCC
Q 013543 130 TEVKDQASCGACWAFSATGAIEGINKIV-TGSLVSLSEQELIDCDR--------------------S-------YNSGCG 181 (441)
Q Consensus 130 tpVkdQg~cGsCwAfa~~~~lE~~~~i~-~~~~~~LSeq~lvdc~~--------------------~-------~~~gC~ 181 (441)
.||+||+.-|.||.||+...+|..+..+ ..+.+.||+.+|+--+. . .....+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 3899999999999999999999977764 55689999988765210 0 144678
Q ss_pred CCchHHHHHHHHHhCCcCCCCCCCCCCC--C-------------------------C-----------------------
Q 013543 182 GGLMDYAYQFVIKNHGIDTEKDYPYRGQ--A-------------------------G----------------------- 211 (441)
Q Consensus 182 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~--~-------------------------~----------------------- 211 (441)
||....+...+ +++|+++.+.||-+.. . +
T Consensus 135 GGqw~m~~~li-~KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 135 GGQWDMLVNLI-EKYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCchHHHHHHH-HHcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887 5569999999984311 0 0
Q ss_pred ---CCCCC-------c----------C----------------------C------ceeEee-----------cceeecC
Q 013543 212 ---QCNKQ-------K----------L----------------------N------RHIVTI-----------DGYKDVP 232 (441)
Q Consensus 212 ---~C~~~-------~----------~----------------------~------~~~~~i-----------~~y~~v~ 232 (441)
..+.. + . . .+.+.+ ..|.+++
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nvp 293 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNVP 293 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEecC
Confidence 00000 0 0 0 000000 1123333
Q ss_pred CChHHHHH----HHHHh-CCeEEEEeccccccccCCCceEeCC----------------------CCCCCCceEEEEEEe
Q 013543 233 ENNEKQLL----QAVVA-QPVSVGICGSERAFQLYSSGIFTGP----------------------CSTSLDHAVLIVGYD 285 (441)
Q Consensus 233 ~~~~~~lk----~al~~-gPV~v~i~~~~~~f~~Y~sGIy~~~----------------------c~~~~~HaV~IVGyg 285 (441)
.+.|+ ++|.. +||.+++++. .|+.|++||++.. +.+..+|||+|||||
T Consensus 294 ---~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~ 368 (437)
T cd00585 294 ---MDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVD 368 (437)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEE
Confidence 34444 45666 5999999985 5779999999643 233568999999999
Q ss_pred ec-CCe-eEEEEEcCCCCCCCCCcEEEEEec
Q 013543 286 SE-NGV-DYWIIKNSWGRSWGMNGYMHMQRN 314 (441)
Q Consensus 286 ~~-~g~-~yWivkNSWG~~WGe~GY~~i~r~ 314 (441)
.+ +|+ .||+||||||+.||++||++|+++
T Consensus 369 ~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 369 LDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred ecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 75 476 699999999999999999999875
No 21
>PF00396 Granulin: Granulin; InterPro: IPR000118 Metazoan granulins [] are a family of cysteine-rich peptides of about 6 Kd which may have multiple biological activity. A precursor protein (known as acrogranin) potentially encodes seven different forms of granulin (grnA to grnG) which are probably released by post-translational proteolytic processing. Granulins are evolutionary related to a PMP-D1, a peptide extracted from the pars intercerebralis of migratory locusts []. A schematic representation of the structure of a granulin is shown below: xxxCxxxxxCxxxxxCCxxxxxxxxCCxxxxxxCCxxxxxCCxxxxxCxxxxxxCx 'C': conserved cysteine probably involved in a disulphide bond. In plants a granulin domain is often associated with the C terminus of cysteine proteases belong to the MEROPS peptidase family C1, subfamily C1A (papain).; PDB: 1I8Y_A 1QGM_A 1I8X_A 2JYT_A 2JYU_A 1FWO_A 2JYV_A 2JYE_A 1G26_A.
Probab=99.69 E-value=6.8e-18 Score=117.10 Aligned_cols=43 Identities=44% Similarity=1.121 Sum_probs=40.0
Q ss_pred ccccccCCCCccccccccCCCCceecCCCCcccCCCCCcccCCCCceec
Q 013543 360 TCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQCLT 408 (441)
Q Consensus 360 tcc~~~~~~~~~~~~~cc~~~~a~cc~d~~~ccp~~~~~c~~~~~~c~~ 408 (441)
|||.+.++. ||||||++||||+|+.||||+|| +||++.++|+|
T Consensus 1 TCC~~~~g~-----~~CCP~~~avCC~D~~hCCP~G~-~C~~~~~~C~k 43 (43)
T PF00396_consen 1 TCCKTPSGG-----YGCCPYPNAVCCSDGKHCCPHGY-TCDPDGGSCIK 43 (43)
T ss_dssp EEEE-TTSS-----EEEEETSSSTTSSTTTTSSSTTS-EEECTTTEEES
T ss_pred CCcccCCCC-----ccccCCCCCCccCCCCccCCCcC-EECCCCCEEcC
Confidence 899999866 99999999999999999999999 99999999986
No 22
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.69 E-value=6.1e-17 Score=121.42 Aligned_cols=58 Identities=41% Similarity=0.777 Sum_probs=52.0
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEecccCCCCChHHh
Q 013543 29 FETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEF 86 (441)
Q Consensus 29 f~~~~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~~s~~lg~N~FsDlt~eEf 86 (441)
|++|+++|+|.|.+.+|+.+|+.+|++|++.|++||+.++.+|++|+|+|||||.+||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 8999999999999999999999999999999999996669999999999999999997
No 23
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.55 E-value=6.3e-14 Score=144.58 Aligned_cols=179 Identities=27% Similarity=0.438 Sum_probs=105.0
Q ss_pred CccccCCCCchhHHHHHHHHHhHhHHHhcC-CcccCCHHHHH----------------hhcCC-----------CCCCCC
Q 013543 130 TEVKDQASCGACWAFSATGAIEGINKIVTG-SLVSLSEQELI----------------DCDRS-----------YNSGCG 181 (441)
Q Consensus 130 tpVkdQg~cGsCwAfa~~~~lE~~~~i~~~-~~~~LSeq~lv----------------dc~~~-----------~~~gC~ 181 (441)
.||.||..-|.||.||+...++..+..+.+ +.+.||+.+|. +.... .....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 399999999999999999999998887765 67999999875 22110 034578
Q ss_pred CCchHHHHHHHHHhCCcCCCCCCCCCCCC---------------------------------------------------
Q 013543 182 GGLMDYAYQFVIKNHGIDTEKDYPYRGQA--------------------------------------------------- 210 (441)
Q Consensus 182 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~--------------------------------------------------- 210 (441)
||....+..-+ +++||++.+.||-+...
T Consensus 136 GGqw~~~~nli-~KYGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 136 GGQWDMVVNLI-KKYGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp -B-HHHHHHHH-HHH---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHH-HHcCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888776 55699999999853210
Q ss_pred --CCCCCC-------cCC--------------------------------------ceeEeec-----------ceeecC
Q 013543 211 --GQCNKQ-------KLN--------------------------------------RHIVTID-----------GYKDVP 232 (441)
Q Consensus 211 --~~C~~~-------~~~--------------------------------------~~~~~i~-----------~y~~v~ 232 (441)
|..+.. +.. .+.+.+. .|.+++
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 000000 000 0001110 022232
Q ss_pred CChHHHHH----HHHHhC-CeEEEEeccccccccCCCceEeCCCC----------------------CCCCceEEEEEEe
Q 013543 233 ENNEKQLL----QAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCS----------------------TSLDHAVLIVGYD 285 (441)
Q Consensus 233 ~~~~~~lk----~al~~g-PV~v~i~~~~~~f~~Y~sGIy~~~c~----------------------~~~~HaV~IVGyg 285 (441)
.+.|+ ++|..| ||-.+-++. . +...+.||.+...- +..+|||+|||.+
T Consensus 295 ---id~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~ 369 (438)
T PF03051_consen 295 ---IDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVD 369 (438)
T ss_dssp ---HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEE
Confidence 33444 445566 999999996 3 44668888754320 1347999999999
Q ss_pred e-cCCe-eEEEEEcCCCCCCCCCcEEEEEec
Q 013543 286 S-ENGV-DYWIIKNSWGRSWGMNGYMHMQRN 314 (441)
Q Consensus 286 ~-~~g~-~yWivkNSWG~~WGe~GY~~i~r~ 314 (441)
. ++|+ .+|+|+||||++.|.+||+.|+..
T Consensus 370 ~D~~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 370 LDEDGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp E-TTSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred eccCCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 6 5665 699999999999999999999753
No 24
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.54 E-value=8.8e-15 Score=109.02 Aligned_cols=57 Identities=51% Similarity=0.912 Sum_probs=54.2
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEecccCCCCChHH
Q 013543 29 FETWCKQHGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQE 85 (441)
Q Consensus 29 f~~~~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~~s~~lg~N~FsDlt~eE 85 (441)
|++|+++|+|.|.+.+|+.+|+.+|++|++.|+.||+.++.+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 689999999999999999999999999999999999876789999999999999986
No 25
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.31 E-value=2.3e-06 Score=83.84 Aligned_cols=75 Identities=27% Similarity=0.448 Sum_probs=51.8
Q ss_pred HHHHHHHH----HhC-CeEEEEeccccccccCCCceEeCC-------CC---------------CCCCceEEEEEEee-c
Q 013543 236 EKQLLQAV----VAQ-PVSVGICGSERAFQLYSSGIFTGP-------CS---------------TSLDHAVLIVGYDS-E 287 (441)
Q Consensus 236 ~~~lk~al----~~g-PV~v~i~~~~~~f~~Y~sGIy~~~-------c~---------------~~~~HaV~IVGyg~-~ 287 (441)
.+.++++. ..| +|=.+-++. .+..-+.||.+.. -+ +-..|||+|.|.+. +
T Consensus 297 me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 297 MERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred HHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 45566543 235 887777764 4666677775321 00 01359999999994 4
Q ss_pred CCe-eEEEEEcCCCCCCCCCcEEEEE
Q 013543 288 NGV-DYWIIKNSWGRSWGMNGYMHMQ 312 (441)
Q Consensus 288 ~g~-~yWivkNSWG~~WGe~GY~~i~ 312 (441)
+|. -=|.|.||||.+=|.+|||-++
T Consensus 375 ~g~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 375 TGNPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred CCCceeeEeecccccccCCCceEeeh
Confidence 443 4699999999999999999875
No 26
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=97.08 E-value=0.0069 Score=52.10 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=58.3
Q ss_pred ccccC--CCCchhHHHHHHHHHhHhHHHhcCCcccCCHHHHHhhcCCCC-------------CCCCCCchHHHHHHHHHh
Q 013543 131 EVKDQ--ASCGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYN-------------SGCGGGLMDYAYQFVIKN 195 (441)
Q Consensus 131 pVkdQ--g~cGsCwAfa~~~~lE~~~~i~~~~~~~LSeq~lvdc~~~~~-------------~gC~GG~~~~a~~~~~~~ 195 (441)
|...| ..-..|+..|++-+++.. |. ..++.+|.+-..... ..-..|.....+..+.+.
T Consensus 4 p~~~Q~~~~~~~Cg~as~~mvl~~~-----g~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (144)
T PF13529_consen 4 PYYSQYDETSYGCGPASAAMVLNYY-----GK--NISQEDLADEAGTNPDGDPNTGFVGNPYYDSGYGTSPDDLARYLEK 76 (144)
T ss_dssp -----TTT-TT-HHHHHHHHHHHHT-----T------HHHHHHHS-EE-E--TTTSEEB-SSTS-B----HHHHHHHHHH
T ss_pred CcEEeCCCCCCcCHHHHHHHHHHHc-----CC--CCCHHHHHHHhhhccCCCCCcccccCccccCCCccccHHHHHHHHH
Confidence 34455 445669998888888766 22 578888877543211 001123333333333333
Q ss_pred CCcCCCCCCCCCCCCCCCCCCcCCceeEeecceeecCCChHHHHHHHHHhC-CeEEEEeccccccccCCCceEeCCCCCC
Q 013543 196 HGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTS 274 (441)
Q Consensus 196 ~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~g-PV~v~i~~~~~~f~~Y~sGIy~~~c~~~ 274 (441)
.|+ ........+.+.|++.|.+| ||.+.+....... .+..+. ...
T Consensus 77 ~~~----------------------------~~~~~~~~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~---~~~ 122 (144)
T PF13529_consen 77 YGY----------------------------KATDTSDASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD---GTY 122 (144)
T ss_dssp H-T----------------------------TEEE-TTS-HHHHHHHHHTT--EEEEEETTSS-----TTEEEE---E-T
T ss_pred cCc----------------------------ceeeccCCcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC---CCc
Confidence 332 00111234568899999987 9999886321111 111221 135
Q ss_pred CCceEEEEEEeecCCeeEEEEEcCC
Q 013543 275 LDHAVLIVGYDSENGVDYWIIKNSW 299 (441)
Q Consensus 275 ~~HaV~IVGyg~~~g~~yWivkNSW 299 (441)
.+|.|+|+||+++. +++|..+|
T Consensus 123 ~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 123 GGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp TEEEEEEEEE-SSE----EEEE-TT
T ss_pred CCEEEEEEEEeCCC---EEEEeCCC
Confidence 68999999999853 78888877
No 27
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=96.44 E-value=0.0031 Score=43.61 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=23.7
Q ss_pred HHHHHHhccCCCCcEEEecccCCCCChHHhhhhhcCcCC
Q 013543 57 YAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFLGFSA 95 (441)
Q Consensus 57 l~~I~~~N~~~~~s~~lg~N~FsDlt~eEf~~~~lg~~~ 95 (441)
-++|+.+|+. +.+|++|.| |.+.|.++++.+ +|..+
T Consensus 3 de~I~~IN~~-~~tWkAG~N-F~~~~~~~ik~L-lGv~~ 38 (41)
T PF08127_consen 3 DEFIDYINSK-NTTWKAGRN-FENTSIEYIKRL-LGVLP 38 (41)
T ss_dssp HHHHHHHHHC-T-SEEE-----SSB-HHHHHHC-S-B-T
T ss_pred HHHHHHHHcC-CCcccCCCC-CCCCCHHHHHHH-cCCCC
Confidence 4689999998 999999999 899999998776 67654
No 28
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=95.16 E-value=0.21 Score=45.42 Aligned_cols=118 Identities=15% Similarity=0.239 Sum_probs=64.3
Q ss_pred cCCCCchhHHHHHHHHHhHhHH--------HhcCCcccCCHHHHHhhcCCCCCCCCCCchHHHHHHHHHhCCcCCCCCCC
Q 013543 134 DQASCGACWAFSATGAIEGINK--------IVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYP 205 (441)
Q Consensus 134 dQg~cGsCwAfa~~~~lE~~~~--------i~~~~~~~LSeq~lvdc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yP 205 (441)
.||.-+=|-+|+.+++|-.... |.+.-...+|+++|.+++. .+...++|.... |....
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~---------~~~~~i~y~ks~-g~~~~---- 83 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL---------TPNQMIKYAKSQ-GRNPQ---- 83 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B----------HHHHHHHHHHT-TEEEE----
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC---------CHHHHHHHHHHc-Ccchh----
Confidence 4888999999999998876422 1112235677777766643 345666665332 42210
Q ss_pred CCCCCCCCCCCcCCceeEeecceeecCCChHHHHHHHHHh-CCeEEEEeccccccccCCCceEeCCCCCCCCceEEEEEE
Q 013543 206 YRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGY 284 (441)
Q Consensus 206 Y~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~lk~al~~-gPV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~HaV~IVGy 284 (441)
.. ...+ +.+.+++.+.+ .|+.+..+.... ......+|||+||||
T Consensus 84 ------------------~~---n~~~--s~~eV~~~~~~nk~i~i~~~~v~~------------~~~~~~gHAlavvGy 128 (175)
T PF05543_consen 84 ------------------YN---NRMP--SFDEVKKLIDNNKGIAILADRVEQ------------TNGPHAGHALAVVGY 128 (175)
T ss_dssp ------------------EE---CS-----HHHHHHHHHTT-EEEEEEEETTS------------CTTB--EEEEEEEEE
T ss_pred ------------------Hh---cCCC--CHHHHHHHHHcCCCeEEEeccccc------------CCCCccceeEEEEee
Confidence 00 0111 35677777775 588775553311 123457899999999
Q ss_pred ee-cCCeeEEEEEcCCC
Q 013543 285 DS-ENGVDYWIIKNSWG 300 (441)
Q Consensus 285 g~-~~g~~yWivkNSWG 300 (441)
-. .+|.++.+|=|=|-
T Consensus 129 a~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 129 AKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp EEETTSEEEEEEE-TT-
T ss_pred eecCCCCeEEEEeCCcc
Confidence 86 56789999977664
No 29
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=85.22 E-value=2.3 Score=42.13 Aligned_cols=65 Identities=20% Similarity=0.276 Sum_probs=40.7
Q ss_pred HHHHHHHHHhC-CeEEEEeccccccccCCCceEeCCCCCCCCceEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEe
Q 013543 236 EKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQR 313 (441)
Q Consensus 236 ~~~lk~al~~g-PV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~HaV~IVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r 313 (441)
.+.|+++|.+| ||.|.++.. +..|...-|. ....+|.|+|+||++++ ..+.++-+ ....+.++++
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~~---~~~~~H~i~v~G~d~~~-~~~~v~D~------~~~~~~~~~~ 143 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYYK---KHHADHYIVVYGYDEEE-DVFYVSDP------PSYEPGRLPY 143 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCccccc---cccCCcEEEEEEEeCCC-CEEEEEcC------CCCcceeecH
Confidence 45688888887 999998764 3334332221 12468999999999764 35666533 3334455554
No 30
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.74 E-value=4.2 Score=37.31 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=36.1
Q ss_pred eecCCChHHHHHHHHHhC-CeEEEEeccccccccCCCceEeCCCCCCCCceEEEEEEeecCCeeEEEEEcCCC
Q 013543 229 KDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWG 300 (441)
Q Consensus 229 ~~v~~~~~~~lk~al~~g-PV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~HaV~IVGyg~~~g~~yWivkNSWG 300 (441)
.++...+..+|+.+|..| ||.+-... |.. ..-|+|+|.|||+. ++..-++||
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~----~~~------------~s~H~v~itgyDk~----n~yynDpyG 168 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTN----FHS------------YSIHSVLITGYDKY----NIYYNDPYG 168 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEec----ccc------------cceeeeEeeccccc----ceEeccccc
Confidence 345556788999999875 88764432 322 23699999999964 555667775
No 31
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=71.53 E-value=3.3 Score=41.42 Aligned_cols=76 Identities=25% Similarity=0.325 Sum_probs=53.0
Q ss_pred CccccCCCCchhHHHHHHHHHhHhHHHhcC-CcccCCHHHHHh--------------------hcCC---------CCCC
Q 013543 130 TEVKDQASCGACWAFSATGAIEGINKIVTG-SLVSLSEQELID--------------------CDRS---------YNSG 179 (441)
Q Consensus 130 tpVkdQg~cGsCwAfa~~~~lE~~~~i~~~-~~~~LSeq~lvd--------------------c~~~---------~~~g 179 (441)
+||.||.+-|-||.|+.+..+---+..+-+ ..+.||..+|+- |..- .+.-
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 599999999999999999887544333322 356788877642 1110 1445
Q ss_pred CCCCchHHHHHHHHHhCCcCCCCCCCC
Q 013543 180 CGGGLMDYAYQFVIKNHGIDTEKDYPY 206 (441)
Q Consensus 180 C~GG~~~~a~~~~~~~~Gi~~e~~yPY 206 (441)
-+||....-+..+ +.+|+.+.++||-
T Consensus 143 ~DGGqw~MfvNlV-kKYGviPKkcy~~ 168 (457)
T KOG4128|consen 143 PDGGQWQMFVNLV-KKYGVIPKKCYLH 168 (457)
T ss_pred CCCchHHHHHHHH-HHhCCCcHHhccc
Confidence 6788887766666 5669999999984
No 32
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=70.68 E-value=0.58 Score=46.64 Aligned_cols=76 Identities=28% Similarity=0.353 Sum_probs=50.1
Q ss_pred hHHHHHHHHHh---C--CeEEEEeccccccccCCCceEeC-----C--------CCC----------CCCceEEEEEEee
Q 013543 235 NEKQLLQAVVA---Q--PVSVGICGSERAFQLYSSGIFTG-----P--------CST----------SLDHAVLIVGYDS 286 (441)
Q Consensus 235 ~~~~lk~al~~---g--PV~v~i~~~~~~f~~Y~sGIy~~-----~--------c~~----------~~~HaV~IVGyg~ 286 (441)
+.+.|++.+.. | ||=.+-++ ..+..-++|+.+- + ..+ ...|||++.|-+.
T Consensus 305 ~~d~l~k~vv~sl~~~kaVwfgcd~--~k~~~~K~G~~dl~l~~~~l~fG~~l~~~~KAeRl~y~eSlmthAml~T~v~~ 382 (457)
T KOG4128|consen 305 SMDILMKIVVTSLEGDKAVWFGCDI--RKAISLKSGPLDLRLHQFDLLFGFKLGESTKAERLDYRESLMTHAMLLTSVGL 382 (457)
T ss_pred CHHHHHHHHHHHhcCCcceEEeccc--HhhhhcccCccchhhccCceeeeeeccccchhhhhhHHHHHHHHHHHhhhccc
Confidence 45677776652 3 77766665 3455666665421 1 001 1369999998882
Q ss_pred ----cCCeeEEEEEcCCCCCCCCCcEEEEE
Q 013543 287 ----ENGVDYWIIKNSWGRSWGMNGYMHMQ 312 (441)
Q Consensus 287 ----~~g~~yWivkNSWG~~WGe~GY~~i~ 312 (441)
+++-.-|-|.||||++-|.+||..|.
T Consensus 383 kd~~~g~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 383 KDPATGGLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred cCcccCCchhhhhhchhhhhccccchhhhh
Confidence 23445699999999999999997663
No 33
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=65.15 E-value=24 Score=35.24 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=24.1
Q ss_pred CCceEEEEEEeecC--CeeEEEEEcCCCC
Q 013543 275 LDHAVLIVGYDSEN--GVDYWIIKNSWGR 301 (441)
Q Consensus 275 ~~HaV~IVGyg~~~--g~~yWivkNSWG~ 301 (441)
.+||-.|++....+ |...-.+||-||.
T Consensus 235 ~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 235 KGHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred cCcceEEeEEEEEccCceEEEEecCCccC
Confidence 48999999998766 8899999999995
No 34
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=64.09 E-value=18 Score=30.76 Aligned_cols=44 Identities=27% Similarity=0.420 Sum_probs=28.2
Q ss_pred HHHHHHhC-CeEEEEeccccccccCCCceEeCCCCCCCCceEEEEEEeecCCeeEEEEEcCC
Q 013543 239 LLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSW 299 (441)
Q Consensus 239 lk~al~~g-PV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~HaV~IVGyg~~~g~~yWivkNSW 299 (441)
+++.+..| ||.+.+... + -....+|.|+|+||+. .+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~---~-----------~~~~~gH~vVv~g~~~---~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG---V-----------SITPSGHAMVVIGYDR---KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC---c-----------ccCCCCeEEEEEEEcC---CCCEEEECCC
Confidence 66777765 998876531 0 1124689999999982 1235566765
No 35
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=57.26 E-value=31 Score=32.65 Aligned_cols=57 Identities=21% Similarity=0.403 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhC-CeEEEEeccccccccC----CCceEeC---CC----CCCCCceEEEEEEeecCCeeEEEEEc
Q 013543 235 NEKQLLQAVVAQ-PVSVGICGSERAFQLY----SSGIFTG---PC----STSLDHAVLIVGYDSENGVDYWIIKN 297 (441)
Q Consensus 235 ~~~~lk~al~~g-PV~v~i~~~~~~f~~Y----~sGIy~~---~c----~~~~~HaV~IVGyg~~~g~~yWivkN 297 (441)
..++|...|..| |+.|-++.. . .+ ++-.... .| ....+|-|+|+||+...+ =++++|
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~---~-L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~--~~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDAS---L-LHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATK--EFEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccc---c-ccChhhcccccccccccccCCCCCccEEEEEEEeecCCCC--eEEEeC
Confidence 467888888875 555444433 2 22 2222211 11 235689999999997643 244444
No 36
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=47.44 E-value=1.8e+02 Score=26.30 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=25.8
Q ss_pred HHHHHHHHHh-CCeEEEEeccccccccCCCceEeCCCCCCCCceEEEEEEeec
Q 013543 236 EKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSE 287 (441)
Q Consensus 236 ~~~lk~al~~-gPV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~HaV~IVGyg~~ 287 (441)
.+.+...|.+ ||+-|++..... .-..|+++|.|-+.+
T Consensus 98 ~e~~~~LL~~yGPLwv~~~~P~~---------------~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 98 AEGLANLLREYGPLWVAWEAPGD---------------SWVAHASVITGIDGD 135 (166)
T ss_pred HHHHHHHHHHcCCeEEEecCCCC---------------cceeeEEEEEeecCC
Confidence 4677777775 999988655321 124799999998754
No 37
>cd00206 snake_toxin Snake toxin domain, present in short and long neurotoxins, cytotoxins and short toxins, and in other miscellaneous venom peptides. The toxin acts by binding to the nicotinic acetylcholine receptors in the postsynaptic membrane of skeletal muscles and preventing the binding of acetylcholine, thereby blocking the excitation of muscles. This domain contains 60-75 amino acids that are fixed by 4-5 disulfide bridges and is nearly all beta sheet; it exists as either monomers or dimers.
Probab=47.19 E-value=21 Score=26.92 Aligned_cols=47 Identities=21% Similarity=0.521 Sum_probs=30.5
Q ss_pred CCCceeeCCCCcccccc---C-CCCccccccc---cCCCCceecCCCCcccCCCCCccc
Q 013543 349 CSLLTYCAAGETCCCGS---S-ILGICLSWKC---CGFSSAVCCSDHRYCCPSNYPICD 400 (441)
Q Consensus 349 c~~~~~c~~~~tcc~~~---~-~~~~~~~~~c---c~~~~a~cc~d~~~ccp~~~~~c~ 400 (441)
|.....||+|++-|-.. . ..|.=..+|| ||-+..- ....||..|. ||
T Consensus 11 ~~~~~tC~~ge~~Cyk~~~~~~~~g~~i~rGCa~tCP~~~~~---~~v~CC~TD~--CN 64 (64)
T cd00206 11 PFTTETCPDGENICYKKSWKDTPRGVRIERGCAATCPKVKPG---EYVTCCTTDK--CN 64 (64)
T ss_pred CCcceeCCcccCccceeEEEcCCCCCEEEccccCcCcCCCCC---cceEecCCCC--CC
Confidence 55567899988888432 1 2344577888 7765542 3568888774 64
No 38
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=40.53 E-value=30 Score=30.43 Aligned_cols=17 Identities=47% Similarity=1.046 Sum_probs=11.0
Q ss_pred CcCCCCceeeCCCCccc
Q 013543 346 PTRCSLLTYCAAGETCC 362 (441)
Q Consensus 346 p~~c~~~~~c~~~~tcc 362 (441)
|..|.....++.+.+||
T Consensus 57 ~~iC~~~~~~~~~~~CC 73 (136)
T PF04885_consen 57 PWICSAKGKCSPGPTCC 73 (136)
T ss_pred chhhcCCCCCCCCCccc
Confidence 44666666667777777
No 39
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=33.53 E-value=26 Score=21.24 Aligned_cols=18 Identities=28% Similarity=0.748 Sum_probs=13.2
Q ss_pred cc-cCCCCCcccCCCCceec
Q 013543 390 YC-CPSNYPICDSVRHQCLT 408 (441)
Q Consensus 390 ~c-cp~~~~~c~~~~~~c~~ 408 (441)
+| ||.|| .=+.....|..
T Consensus 3 ~C~C~~Gy-~l~~d~~~C~D 21 (24)
T PF12662_consen 3 TCSCPPGY-QLSPDGRSCED 21 (24)
T ss_pred EeeCCCCC-cCCCCCCcccc
Confidence 56 99999 76666677764
No 40
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=31.89 E-value=39 Score=23.25 Aligned_cols=17 Identities=35% Similarity=0.821 Sum_probs=13.6
Q ss_pred CcCCCCceeeCCCCccc
Q 013543 346 PTRCSLLTYCAAGETCC 362 (441)
Q Consensus 346 p~~c~~~~~c~~~~tcc 362 (441)
+..|.....||.+.+|=
T Consensus 16 ~~~C~~~~~CP~~y~C~ 32 (45)
T PF14625_consen 16 PVSCSPDNSCPSGYSCH 32 (45)
T ss_pred eeECcCCCCCCCcCEee
Confidence 44797777899999984
No 41
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=31.12 E-value=29 Score=20.35 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=10.3
Q ss_pred CCChHHhhhhhcC
Q 013543 80 DLTHQEFKASFLG 92 (441)
Q Consensus 80 Dlt~eEf~~~~lg 92 (441)
-+++++|++++|+
T Consensus 9 p~SNddFrkmfl~ 21 (21)
T PF05391_consen 9 PKSNDDFRKMFLK 21 (21)
T ss_pred ccchHHHHHHHcC
Confidence 4788999998763
No 42
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.56 E-value=2.7e+02 Score=21.62 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHH
Q 013543 27 ELFETWCKQHGKAYSSEQEKQQRLKIFEDNYAFV 60 (441)
Q Consensus 27 ~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I 60 (441)
..|++|..+|.+.-..+ |..+|.+-|++-++.-
T Consensus 29 e~Fee~v~~~krel~pp-e~~~~~EE~~~~lRe~ 61 (77)
T KOG4702|consen 29 EIFEEFVRGYKRELSPP-EATKRKEEYENFLREQ 61 (77)
T ss_pred HHHHHHHHhccccCCCh-HHHhhHHHHHHHHHHH
Confidence 47999999999987654 7788888887666543
No 43
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=29.35 E-value=2.2e+02 Score=26.26 Aligned_cols=49 Identities=37% Similarity=0.675 Sum_probs=28.8
Q ss_pred HHHHHHHHhC-CeEEEEeccccccccCCCceEeCCCCCCCCceEEEEEEeecCCeeEEEEEcCCCCCCC--CCcEEE
Q 013543 237 KQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWG--MNGYMH 310 (441)
Q Consensus 237 ~~lk~al~~g-PV~v~i~~~~~~f~~Y~sGIy~~~c~~~~~HaV~IVGyg~~~g~~yWivkNSWG~~WG--e~GY~~ 310 (441)
+.|+..|.++ ||.+.-... ..+||.+|=||..+ .||-+= || || .+||++
T Consensus 141 ~~i~~el~~~rPV~~~g~~~------------------~~GHawViDGy~~~---~~~H~N--wG--W~G~~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSK------------------SGGHAWVIDGYDSD---GYFHCN--WG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEET------------------TEEEEEEEEEEESS---SEEEEE---S--STTTT-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecC------------------CCCeEEEEcCccCC---CeEEEe--eC--ccCCCCCccC
Confidence 4566667664 987543211 11899999999643 577663 55 54 468875
No 44
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=28.01 E-value=43 Score=20.61 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=9.9
Q ss_pred CchHHHHHHHHHHHh
Q 013543 1 MNSLAFFLLSILLLS 15 (441)
Q Consensus 1 M~~~~~~l~~~l~~s 15 (441)
|++++|.++.+++++
T Consensus 7 mKkil~~l~a~~~La 21 (25)
T PF08139_consen 7 MKKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHHh
Confidence 377777777666554
No 45
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=27.61 E-value=22 Score=24.44 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=13.8
Q ss_pred CchHHHHHHHHHHHhhCC
Q 013543 1 MNSLAFFLLSILLLSSLP 18 (441)
Q Consensus 1 M~~~~~~l~~~l~~s~~~ 18 (441)
||++.+++|++|++++..
T Consensus 1 MN~YsvfvFaiLaissvs 18 (43)
T PF10917_consen 1 MNVYSVFVFAILAISSVS 18 (43)
T ss_pred CceeeehHHHHhhhhccc
Confidence 888777888888877654
No 46
>PF13333 rve_2: Integrase core domain
Probab=26.65 E-value=1.3e+02 Score=21.34 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=25.2
Q ss_pred hCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEecccCCCCChHHhhhhhc
Q 013543 36 HGKAYSSEQEKQQRLKIFEDNYAFVTQHNNMGNSSFTLSLNAFADLTHQEFKASFL 91 (441)
Q Consensus 36 ~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~~s~~lg~N~FsDlt~eEf~~~~l 91 (441)
|++.|.+-+|. +..|+ ++|+-+|.+. + ..||+.||++..|
T Consensus 13 ~~~~~~t~eel--~~~I~----~YI~~yN~~R-------l---~~lsP~eyr~~~l 52 (52)
T PF13333_consen 13 YRQKFKTREEL--KQAID----EYIDYYNNER-------L---KGLSPVEYRNQYL 52 (52)
T ss_pred CCcccchHHHH--HHHHH----HHHHHhccCC-------C---CCcCHHHHHHhhC
Confidence 45566665443 33333 4788888862 2 2999999987653
No 47
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=23.75 E-value=2e+02 Score=21.85 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=12.4
Q ss_pred CchHHHHHHHHHHHhhCCCCC
Q 013543 1 MNSLAFFLLSILLLSSLPLNY 21 (441)
Q Consensus 1 M~~~~~~l~~~l~~s~~~~~~ 21 (441)
|+.++..+++++++.++..+.
T Consensus 1 MWIiiSIvLai~lLI~l~~ns 21 (66)
T PF07438_consen 1 MWIIISIVLAIALLISLSVNS 21 (66)
T ss_pred ChhhHHHHHHHHHHHHHhhhH
Confidence 677665666666665555443
No 48
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=21.52 E-value=1.5e+02 Score=29.78 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=22.2
Q ss_pred CCceEEEEEEeecCCee--EEEEEcCCCC
Q 013543 275 LDHAVLIVGYDSENGVD--YWIIKNSWGR 301 (441)
Q Consensus 275 ~~HaV~IVGyg~~~g~~--yWivkNSWG~ 301 (441)
.+||=.|++...-++.+ -..+||-||.
T Consensus 227 ~~HaYsVl~v~~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 227 KGHAYSVTDVREVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred cCccEEEEEEEEEecCCeEEEEEECCCCC
Confidence 48999999988655555 8999999994
No 49
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=21.36 E-value=42 Score=20.20 Aligned_cols=10 Identities=40% Similarity=1.354 Sum_probs=5.8
Q ss_pred ccc-CCCCcee
Q 013543 375 KCC-GFSSAVC 384 (441)
Q Consensus 375 ~cc-~~~~a~c 384 (441)
||| |||+|.|
T Consensus 1 gccg~ypnaac 11 (26)
T PF07829_consen 1 GCCGPYPNAAC 11 (26)
T ss_dssp --STTSSSSS-
T ss_pred CCccCCCCccc
Confidence 455 6899988
No 50
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=20.52 E-value=68 Score=29.69 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=9.4
Q ss_pred CchHHHHHHHHHHHhh
Q 013543 1 MNSLAFFLLSILLLSS 16 (441)
Q Consensus 1 M~~~~~~l~~~l~~s~ 16 (441)
|+.|++||++++++..
T Consensus 1 MKll~~lilli~~~~~ 16 (212)
T PF11912_consen 1 MKLLISLILLILLIIN 16 (212)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 7776655555555443
Done!