Query 013544
Match_columns 441
No_of_seqs 136 out of 791
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 04:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 1.3E-23 2.9E-28 169.4 9.6 78 349-439 1-79 (79)
2 cd02861 E_set_proteins_like E 99.8 3.7E-18 8.1E-23 137.3 9.0 77 350-439 2-82 (82)
3 KOG1616 Protein involved in Sn 99.6 4.8E-15 1E-19 145.9 7.9 83 349-441 79-162 (289)
4 cd02858 Esterase_N_term Estera 99.2 4.8E-11 1E-15 97.4 9.0 77 349-438 5-84 (85)
5 cd02688 E_set E or "early" set 98.9 1.1E-08 2.5E-13 78.6 8.2 70 350-431 4-75 (83)
6 cd02854 Glycogen_branching_enz 98.4 1.2E-06 2.6E-11 74.3 7.6 68 350-429 5-86 (99)
7 PF02922 CBM_48: Carbohydrate- 98.3 4.9E-07 1.1E-11 71.8 4.3 59 350-419 11-74 (85)
8 cd05808 CBM20_alpha_amylase Al 97.7 0.00014 3E-09 59.3 7.7 63 351-425 2-78 (95)
9 cd02860 Pullulanase_N_term Pul 97.7 0.00012 2.7E-09 60.7 7.1 68 351-432 9-88 (100)
10 cd02855 Glycogen_branching_enz 97.4 0.00078 1.7E-08 55.2 8.4 77 351-438 22-105 (106)
11 COG0296 GlgB 1,4-alpha-glucan 97.4 0.00024 5.2E-09 77.7 6.5 67 348-426 34-108 (628)
12 PF00686 CBM_20: Starch bindin 97.4 0.00043 9.3E-09 57.2 5.9 58 350-415 2-68 (96)
13 cd02856 Glycogen_debranching_e 97.3 0.00074 1.6E-08 56.6 7.1 53 351-417 10-66 (103)
14 cd05814 CBM20_Prei4 Prei4, N-t 97.2 0.0026 5.6E-08 55.1 8.9 55 351-415 2-66 (120)
15 cd05818 CBM20_water_dikinase P 97.2 0.0022 4.8E-08 53.3 8.2 65 350-427 2-78 (92)
16 PRK12313 glycogen branching en 97.2 0.0012 2.6E-08 71.4 8.4 66 350-427 38-110 (633)
17 PLN02447 1,4-alpha-glucan-bran 97.1 0.0023 4.9E-08 71.5 10.5 62 351-425 115-190 (758)
18 PRK12568 glycogen branching en 97.1 0.0016 3.5E-08 72.4 8.9 69 348-429 136-212 (730)
19 cd05820 CBM20_novamyl Novamyl 97.0 0.0055 1.2E-07 52.0 9.3 69 350-430 3-90 (103)
20 cd05811 CBM20_glucoamylase Glu 97.0 0.0064 1.4E-07 51.0 9.6 71 349-427 6-90 (106)
21 cd02852 Isoamylase_N_term Isoa 97.0 0.0026 5.6E-08 54.4 6.9 61 350-421 7-74 (119)
22 cd05809 CBM20_beta_amylase Bet 97.0 0.0046 9.9E-08 51.9 8.2 70 349-427 2-86 (99)
23 PRK14705 glycogen branching en 96.9 0.0035 7.6E-08 73.2 9.0 66 348-425 636-709 (1224)
24 PRK14706 glycogen branching en 96.8 0.0035 7.7E-08 68.6 8.0 67 350-429 38-112 (639)
25 cd02853 MTHase_N_term Maltooli 96.7 0.0086 1.9E-07 48.6 7.8 73 350-438 8-82 (85)
26 cd05817 CBM20_DSP Dual-specifi 96.6 0.0065 1.4E-07 51.1 6.8 45 359-415 12-62 (100)
27 TIGR02402 trehalose_TreZ malto 96.6 0.0047 1E-07 66.1 7.2 70 352-438 1-73 (542)
28 cd05467 CBM20 The family 20 ca 96.6 0.0098 2.1E-07 48.3 7.3 46 359-415 12-65 (96)
29 cd05813 CBM20_genethonin_1 Gen 96.6 0.0099 2.1E-07 49.2 7.3 53 351-415 2-62 (95)
30 PRK05402 glycogen branching en 96.6 0.0075 1.6E-07 66.6 8.6 66 350-426 131-203 (726)
31 cd05816 CBM20_DPE2_repeat2 Dis 96.5 0.027 5.9E-07 47.2 9.5 64 352-427 2-82 (99)
32 cd05807 CBM20_CGTase CGTase, C 96.4 0.024 5.3E-07 47.5 9.0 73 349-429 2-89 (101)
33 PLN02316 synthase/transferase 95.9 0.097 2.1E-06 60.7 13.3 64 347-417 326-398 (1036)
34 TIGR01515 branching_enzym alph 95.8 0.027 5.9E-07 61.1 8.0 68 350-429 28-103 (613)
35 cd05810 CBM20_alpha_MTH Glucan 95.8 0.054 1.2E-06 45.7 8.1 65 351-427 2-84 (97)
36 PRK05402 glycogen branching en 95.8 0.018 4E-07 63.6 6.6 62 351-425 29-95 (726)
37 cd05815 CBM20_DPE2_repeat1 Dis 94.9 0.091 2E-06 43.9 6.6 65 352-425 2-81 (101)
38 TIGR02104 pulA_typeI pullulana 94.1 0.15 3.2E-06 55.4 7.7 66 351-429 20-95 (605)
39 PF03423 CBM_25: Carbohydrate 94.0 0.13 2.8E-06 42.9 5.5 63 351-421 3-76 (87)
40 cd05806 CBM20_laforin Laforin 93.8 0.54 1.2E-05 41.5 9.2 56 355-415 10-74 (112)
41 PLN02316 synthase/transferase 93.6 0.28 6.1E-06 57.0 9.1 56 349-415 490-557 (1036)
42 PRK10439 enterobactin/ferric e 92.1 0.67 1.4E-05 48.4 8.7 81 347-440 36-161 (411)
43 PLN02950 4-alpha-glucanotransf 91.9 0.91 2E-05 52.3 10.1 70 349-430 152-237 (909)
44 PF11806 DUF3327: Domain of un 91.8 0.95 2.1E-05 40.1 8.1 79 350-439 2-111 (122)
45 TIGR02100 glgX_debranch glycog 91.4 0.47 1E-05 52.8 7.0 55 351-419 15-75 (688)
46 PLN02950 4-alpha-glucanotransf 89.0 1.9 4.1E-05 49.8 9.4 67 350-425 9-90 (909)
47 TIGR02102 pullulan_Gpos pullul 88.1 1.2 2.6E-05 52.4 7.2 65 351-427 328-407 (1111)
48 PRK03705 glycogen debranching 87.1 1.2 2.7E-05 49.4 6.3 55 351-419 20-78 (658)
49 PLN02960 alpha-amylase 85.6 0.77 1.7E-05 52.9 3.8 59 351-416 129-198 (897)
50 cd02857 CD_pullulan_degrading_ 84.1 4.7 0.0001 33.4 7.0 58 350-415 16-79 (116)
51 TIGR02103 pullul_strch alpha-1 82.9 4.5 9.8E-05 46.9 8.4 68 350-429 135-216 (898)
52 PRK14510 putative bifunctional 77.5 6.8 0.00015 46.7 7.7 56 350-419 23-84 (1221)
53 PLN03244 alpha-amylase; Provis 61.6 6.5 0.00014 45.4 3.0 60 351-416 132-201 (872)
54 PF01357 Pollen_allerg_1: Poll 58.6 19 0.00042 29.8 4.6 58 350-422 14-77 (82)
55 PF00392 GntR: Bacterial regul 57.2 12 0.00026 28.8 3.0 31 62-92 3-34 (64)
56 COG3794 PetE Plastocyanin [Ene 53.3 38 0.00083 30.9 6.0 51 348-412 60-111 (128)
57 PLN02877 alpha-amylase/limit d 52.7 44 0.00096 39.5 7.7 52 350-416 222-280 (970)
58 PF02903 Alpha-amylase_N: Alph 51.8 28 0.00061 29.9 4.7 67 351-425 22-100 (120)
59 smart00345 HTH_GNTR helix_turn 49.9 21 0.00046 25.7 3.1 32 64-95 1-33 (60)
60 COG1725 Predicted transcriptio 49.6 42 0.0009 30.6 5.6 46 63-110 15-61 (125)
61 KOG0470 1,4-alpha-glucan branc 49.5 18 0.00039 41.4 3.9 42 352-404 115-158 (757)
62 PF03370 CBM_21: Putative phos 46.9 72 0.0016 27.7 6.4 73 351-423 22-106 (113)
63 KOG2264 Exostosin EXT1L [Signa 46.6 19 0.00041 40.6 3.5 63 275-337 98-167 (907)
64 TIGR03503 conserved hypothetic 44.0 48 0.001 35.2 5.8 43 363-418 151-195 (374)
65 KOG1263 Multicopper oxidases [ 41.5 40 0.00086 37.5 4.9 24 394-417 96-120 (563)
66 PF10281 Ish1: Putative stress 39.7 50 0.0011 23.6 3.6 30 66-102 7-36 (38)
67 TIGR02325 C_P_lyase_phnF phosp 37.1 43 0.00093 31.3 3.8 30 62-91 11-41 (238)
68 TIGR03337 phnR transcriptional 35.5 71 0.0015 29.7 5.0 33 62-94 4-37 (231)
69 TIGR02404 trehalos_R_Bsub treh 34.8 49 0.0011 31.1 3.8 30 62-91 3-33 (233)
70 PF08022 FAD_binding_8: FAD-bi 33.6 14 0.0003 31.2 0.0 14 19-38 47-60 (105)
71 TIGR02018 his_ut_repres histid 33.1 55 0.0012 30.8 3.9 30 62-91 4-34 (230)
72 PF11896 DUF3416: Domain of un 33.0 71 0.0015 30.7 4.6 40 370-422 55-99 (187)
73 PF13473 Cupredoxin_1: Cupredo 32.9 91 0.002 26.0 4.8 16 396-411 74-90 (104)
74 TIGR02375 pseudoazurin pseudoa 32.7 1.4E+02 0.003 26.6 6.1 16 350-365 23-38 (116)
75 PRK14999 histidine utilization 32.2 56 0.0012 31.0 3.8 31 61-91 14-45 (241)
76 cd01278 aprataxin_related apra 30.1 51 0.0011 27.2 2.8 34 77-111 42-75 (104)
77 PRK12423 LexA repressor; Provi 30.0 55 0.0012 30.8 3.3 43 61-113 8-52 (202)
78 PF11797 DUF3324: Protein of u 28.6 2E+02 0.0044 25.8 6.5 25 403-427 102-129 (140)
79 PRK00446 cyaY frataxin-like pr 26.4 1.6E+02 0.0034 26.0 5.3 27 395-425 57-83 (105)
80 PF07495 Y_Y_Y: Y_Y_Y domain; 24.8 72 0.0016 24.0 2.6 25 399-423 30-58 (66)
81 PF07862 Nif11: Nitrogen fixat 24.3 53 0.0011 24.4 1.7 17 92-108 28-44 (49)
82 PF05615 THOC7: Tho complex su 24.1 1.6E+02 0.0035 26.1 5.0 36 281-316 71-106 (139)
83 PRK04984 fatty acid metabolism 24.1 98 0.0021 29.1 3.8 30 62-91 10-40 (239)
84 PF02970 TBCA: Tubulin binding 23.9 62 0.0013 27.5 2.2 53 282-334 23-77 (90)
85 PRK09764 DNA-binding transcrip 23.8 97 0.0021 29.5 3.8 30 62-91 8-38 (240)
86 KOG3990 Uncharacterized conser 23.7 70 0.0015 32.9 2.9 30 283-312 231-260 (305)
87 PF07664 FeoB_C: Ferrous iron 23.2 55 0.0012 25.1 1.6 16 75-90 34-49 (54)
88 KOG0045 Cytosolic Ca2+-depende 22.9 69 0.0015 36.0 3.0 27 404-430 114-143 (612)
89 KOG0272 U4/U6 small nuclear ri 22.8 1.5E+02 0.0033 32.4 5.3 78 294-371 112-197 (459)
90 PF14347 DUF4399: Domain of un 22.6 1.3E+02 0.0028 25.7 3.9 33 394-427 49-81 (87)
91 PRK10785 maltodextrin glucosid 22.6 2.9E+02 0.0063 30.6 7.6 51 360-418 33-87 (598)
92 PRK11402 DNA-binding transcrip 22.0 1.1E+02 0.0024 29.0 3.8 30 62-91 12-42 (241)
93 PF01726 LexA_DNA_bind: LexA D 21.6 1E+02 0.0022 24.7 3.0 26 62-91 9-34 (65)
94 COG2410 Predicted nuclease (RN 20.6 54 0.0012 31.8 1.4 25 70-94 66-91 (178)
95 PF05524 PEP-utilisers_N: PEP- 20.6 1.1E+02 0.0025 26.2 3.3 23 321-343 65-87 (123)
96 smart00312 PX PhoX homologous 20.3 3.3E+02 0.0072 21.9 5.8 85 25-119 9-95 (105)
97 PF15513 DUF4651: Domain of un 20.3 71 0.0015 26.2 1.8 16 61-76 4-19 (62)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.90 E-value=1.3e-23 Score=169.40 Aligned_cols=78 Identities=35% Similarity=0.699 Sum_probs=71.6
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeeecCCCCCcc
Q 013544 349 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 428 (441)
Q Consensus 349 L~~VTFtW~~~AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~~DPd~PtV 428 (441)
.++|+|+|+++|++|+|+|+|++|++.++|.+. ..+ |++++.||||.|+|||+|||.|++||+.|++
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~ 67 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE 67 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence 368999999999999999999999988999975 334 9999999999999999999999999999999
Q ss_pred cC-CCccceEEE
Q 013544 429 TK-GGICNNILR 439 (441)
Q Consensus 429 tD-~Gn~NNVL~ 439 (441)
.+ .|+.||+|.
T Consensus 68 ~d~~G~~NN~i~ 79 (79)
T cd02859 68 TDDEGNVNNVID 79 (79)
T ss_pred CCCCCcEeeeEC
Confidence 87 799999984
No 2
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.75 E-value=3.7e-18 Score=137.31 Aligned_cols=77 Identities=39% Similarity=0.689 Sum_probs=68.1
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeee-cCCCCCc
Q 013544 350 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES 427 (441)
Q Consensus 350 ~~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~-~DPd~Pt 427 (441)
.+|+|+|.++ ++.|+|+|+|++|+ .++|.++ .+|.|++++.|+||.|+|||+|||.|. +||.++.
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~ 68 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA 68 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence 4799999998 69999999999998 5789874 569999999999999999999999998 9999997
Q ss_pred cc-C-CCccceEEE
Q 013544 428 VT-K-GGICNNILR 439 (441)
Q Consensus 428 Vt-D-~Gn~NNVL~ 439 (441)
.. + .|+.|+||.
T Consensus 69 ~~~~~~g~~n~v~~ 82 (82)
T cd02861 69 YVDDGFGGKNAVFV 82 (82)
T ss_pred eecCCCCccceEcC
Confidence 65 4 488899873
No 3
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.56 E-value=4.8e-15 Score=145.92 Aligned_cols=83 Identities=39% Similarity=0.567 Sum_probs=75.1
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEECCeeecCCCCCcc
Q 013544 349 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 428 (441)
Q Consensus 349 L~~VTFtW~~~AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVDGeW~~DPd~PtV 428 (441)
-.+|+|+|..+++.|+|.|+|++|...++|.+.- +..|.|.+++.|++|.|+|||+|||+|.+|++.|++
T Consensus 79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta 148 (289)
T KOG1616|consen 79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA 148 (289)
T ss_pred CCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCccc
Confidence 4689999999999999999999999989988641 244559999999999999999999999999999999
Q ss_pred cC-CCccceEEEeC
Q 013544 429 TK-GGICNNILRVI 441 (441)
Q Consensus 429 tD-~Gn~NNVL~V~ 441 (441)
.+ .|+.||+|.|.
T Consensus 149 ~d~~Gn~~N~i~v~ 162 (289)
T KOG1616|consen 149 EDSLGNLNNILEVQ 162 (289)
T ss_pred ccccCCcccceEec
Confidence 98 79999999984
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.23 E-value=4.8e-11 Score=97.43 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=65.0
Q ss_pred ceEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EcCCeeEEEEEEECCeeecCCCCC
Q 013544 349 LEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRE 426 (441)
Q Consensus 349 L~~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL-~LpPGrYEYKFIVDGeW~~DPd~P 426 (441)
...|+|+..++ +++|.|.|+|++|.. ++|.++ +.|.|++++ .|.+|.|.|+|+|||.|+.||.++
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~ 71 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNP 71 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCCCcc-EeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCC
Confidence 45799998887 899999999998864 789875 689999998 488999999999999999999999
Q ss_pred ccc-CCCccceEE
Q 013544 427 SVT-KGGICNNIL 438 (441)
Q Consensus 427 tVt-D~Gn~NNVL 438 (441)
... +.+..-|++
T Consensus 72 ~~~~~~~~~~~~~ 84 (85)
T cd02858 72 TTKPGRQVDTSGV 84 (85)
T ss_pred ceeecccccceee
Confidence 877 455555543
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.86 E-value=1.1e-08 Score=78.57 Aligned_cols=70 Identities=30% Similarity=0.478 Sum_probs=60.6
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCC-eeEEEEEEECCeeecCCCCCc
Q 013544 350 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES 427 (441)
Q Consensus 350 ~~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpP-GrYEYKFIVDGeW~~DPd~Pt 427 (441)
..|+|++.++ ++.|.|.+.|++|...++|.+. ..|.|.+.+.+.. |.|.|+|+|||.|.+++.++.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~ 71 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK 71 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence 4789999887 8999999999997677899864 5699999999887 999999999999999998866
Q ss_pred ccCC
Q 013544 428 VTKG 431 (441)
Q Consensus 428 VtD~ 431 (441)
..+.
T Consensus 72 ~~~~ 75 (83)
T cd02688 72 ADEG 75 (83)
T ss_pred hhcC
Confidence 6653
No 6
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.38 E-value=1.2e-06 Score=74.28 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=52.3
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEc--------CCe-eEEEEEEE-CC
Q 013544 350 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG 417 (441)
Q Consensus 350 ~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~L--------pPG-rYEYKFIV-DG 417 (441)
..++|+..++ |+.|+|+|+||+|+.. ++|.+. ..|+|++++.. +.| .|.|.+.. ||
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 4688998887 9999999999999864 679874 58999999864 456 56666666 78
Q ss_pred ee--ecCCCCCccc
Q 013544 418 QW--KVDPQRESVT 429 (441)
Q Consensus 418 eW--~~DPd~PtVt 429 (441)
+| +.||-...+.
T Consensus 73 ~~~~~~DPyA~~~~ 86 (99)
T cd02854 73 EWIDRIPAWIKYVT 86 (99)
T ss_pred CEEEEcCcceeEEE
Confidence 76 4677665544
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.35 E-value=4.9e-07 Score=71.84 Aligned_cols=59 Identities=27% Similarity=0.435 Sum_probs=47.4
Q ss_pred eEEEEEEecC-CceEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCcEEEEEE--cCCeeEEEEEEECCee
Q 013544 350 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQW 419 (441)
Q Consensus 350 ~~VTFtW~~~-AksVeVaGSFNn-W~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~--LpPGrYEYKFIVDGeW 419 (441)
..|+|+..++ |+.|.|.+.|++ |... ++|.+. ...|+|++++. +++|.++|+|.|||..
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 5899998886 999999999999 8654 789831 26899999998 8989888899888653
No 8
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.73 E-value=0.00014 Score=59.34 Aligned_cols=63 Identities=27% Similarity=0.556 Sum_probs=47.4
Q ss_pred EEEEEEec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---CC-
Q 013544 351 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG- 417 (441)
Q Consensus 351 ~VTFtW~~---~AksVeVaGS---FNnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---DG- 417 (441)
+|+|.... .|..|+|+|+ +.+|++. ++|... ..+.|.+++.||+| .++|||++ +|
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~ 69 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT 69 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence 46666654 4899999996 6899864 678653 56889999999987 79999996 24
Q ss_pred -eeecCCCC
Q 013544 418 -QWKVDPQR 425 (441)
Q Consensus 418 -eW~~DPd~ 425 (441)
.|...++.
T Consensus 70 ~~WE~~~nr 78 (95)
T cd05808 70 VTWESGPNR 78 (95)
T ss_pred EEEecCCCE
Confidence 47666643
No 9
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.70 E-value=0.00012 Score=60.69 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=53.4
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCe-----
Q 013544 351 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ----- 418 (441)
Q Consensus 351 ~VTFtW~~~-AksVeVaGSFNnW~-----~~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGe----- 418 (441)
.++|+..++ |++|.|.. |++|. ..++|.+. ..|+|++.+. +.+|.+ |+|.|+|.
T Consensus 9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~ 74 (100)
T cd02860 9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRG------------ENGVWSVTLDGDLEGYY-YLYEVKVYKGETN 74 (100)
T ss_pred CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecC------------CCCEEEEEeCCccCCcE-EEEEEEEeceEEE
Confidence 578987777 99999987 88886 45788763 6899999986 666765 89999876
Q ss_pred eecCCCCCcccCCC
Q 013544 419 WKVDPQRESVTKGG 432 (441)
Q Consensus 419 W~~DPd~PtVtD~G 432 (441)
...||-...+...|
T Consensus 75 ~~~DPyA~~~~~~~ 88 (100)
T cd02860 75 EVVDPYAKALSANG 88 (100)
T ss_pred EEcCcccEeEeeCC
Confidence 78899887776544
No 10
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.44 E-value=0.00078 Score=55.18 Aligned_cols=77 Identities=26% Similarity=0.357 Sum_probs=50.6
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-cCCee-EEEEEEEC-Cee--ecCC
Q 013544 351 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGT-YEIKFIVD-GQW--KVDP 423 (441)
Q Consensus 351 ~VTFtW~~~-AksVeVaGSFNnW~~-~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGr-YEYKFIVD-GeW--~~DP 423 (441)
.++|+...+ |+.|.|.|+|++|.. .++|.+. ...|.|.+.+. +++|. |.|++..+ |.| ..||
T Consensus 22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP 90 (106)
T cd02855 22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP 90 (106)
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence 478887766 999999999999964 3678764 24899999886 66674 44444443 333 4466
Q ss_pred CCCcccCCCccceEE
Q 013544 424 QRESVTKGGICNNIL 438 (441)
Q Consensus 424 d~PtVtD~Gn~NNVL 438 (441)
-..-+......++|+
T Consensus 91 Ya~~~~~~~~~~~~~ 105 (106)
T cd02855 91 YAFYSELRPGTASIV 105 (106)
T ss_pred CceeeEeCCCCeEEe
Confidence 555444433355554
No 11
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.00024 Score=77.67 Aligned_cols=67 Identities=25% Similarity=0.459 Sum_probs=53.3
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCe-----e
Q 013544 348 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----W 419 (441)
Q Consensus 348 gL~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGe-----W 419 (441)
|...|+|...++ ++.|.|.|+||+|+.. .+|... ++.|.|.++++ +++| +.|||.|++. +
T Consensus 34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-----------~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~ 101 (628)
T COG0296 34 GVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-----------KESGIWELFVPGAPPG-TRYKYELIDPSGQLRL 101 (628)
T ss_pred CCCceEEEEECCCCCeEEEEeecCCccceecccccC-----------CCCceEEEeccCCCCC-CeEEEEEeCCCCceee
Confidence 566899998887 9999999999999873 344432 36799999998 9999 9999999754 3
Q ss_pred ecCCCCC
Q 013544 420 KVDPQRE 426 (441)
Q Consensus 420 ~~DPd~P 426 (441)
+.||-.-
T Consensus 102 ~~DP~a~ 108 (628)
T COG0296 102 KADPYAR 108 (628)
T ss_pred ccCchhh
Confidence 6776543
No 12
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.36 E-value=0.00043 Score=57.22 Aligned_cols=58 Identities=22% Similarity=0.427 Sum_probs=45.3
Q ss_pred eEEEEEEec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 013544 350 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 415 (441)
Q Consensus 350 ~~VTFtW~~---~AksVeVaGSFN---nW~~--~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV 415 (441)
+.|+|.... .+..|+|+|+.. +|++ .++|.... ++.....|++++.||.| .++|||+|
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNE--------GTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBES--------SSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhcccccccc--------CCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 467888754 489999999996 8997 47787531 01246899999999998 79999999
No 13
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.33 E-value=0.00074 Score=56.59 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=42.1
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEE-EcCCeeEEEEEEECC
Q 013544 351 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDG 417 (441)
Q Consensus 351 ~VTFtW~~~-AksVeVaGSFNnW~--~~IpM~kd~ss~~~~~~~tkesG~FsttL-~LpPGrYEYKFIVDG 417 (441)
.++|+..++ |+.|.|.. |++|. ..++|.++ ..|+|.+.+ .+.+|. .|+|.|||
T Consensus 10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g 66 (103)
T cd02856 10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHG 66 (103)
T ss_pred CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECC
Confidence 478987777 99999998 66664 34788764 579999998 467776 79999999
No 14
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.17 E-value=0.0026 Score=55.13 Aligned_cols=55 Identities=24% Similarity=0.558 Sum_probs=43.3
Q ss_pred EEEEEEec----CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 013544 351 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 415 (441)
Q Consensus 351 ~VTFtW~~----~AksVeVaGS---FNnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV 415 (441)
.|+|.... .++.|+|+|+ +.+|++. ++|.... ...+.|.+.+.||++ .++|||+|
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~ 66 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV 66 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence 46666655 3899999999 8999854 5787531 145789999999998 89999999
No 15
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.17 E-value=0.0022 Score=53.35 Aligned_cols=65 Identities=28% Similarity=0.477 Sum_probs=49.4
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---CC--
Q 013544 350 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-- 417 (441)
Q Consensus 350 ~~VTFtW~~---~AksVeVaGSF---NnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---DG-- 417 (441)
..|+|...+ .|..|+|+|+- .+|++..+|.. ..+.|.+.+.+|+| .++|||++ ||
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v 68 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV 68 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence 356666655 38999999988 59997777764 24569999999988 79999999 44
Q ss_pred eeecCCCCCc
Q 013544 418 QWKVDPQRES 427 (441)
Q Consensus 418 eW~~DPd~Pt 427 (441)
.|...++.-.
T Consensus 69 ~WE~g~Nr~~ 78 (92)
T cd05818 69 IWEGGNNRVL 78 (92)
T ss_pred EEEeCCCEEE
Confidence 4877666543
No 16
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.17 E-value=0.0012 Score=71.36 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=49.6
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCe-eEEEEEEE-CCee--ecC
Q 013544 350 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD 422 (441)
Q Consensus 350 ~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPG-rYEYKFIV-DGeW--~~D 422 (441)
..|+|+..++ |+.|+|.|+|++|... ++|.+. ..|+|.+++. +.+| .|.|++.+ ||.| ..|
T Consensus 38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 105 (633)
T PRK12313 38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID 105 (633)
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence 4789998887 9999999999999864 678763 5799999997 5555 66666644 5765 456
Q ss_pred CCCCc
Q 013544 423 PQRES 427 (441)
Q Consensus 423 Pd~Pt 427 (441)
|-...
T Consensus 106 Pya~~ 110 (633)
T PRK12313 106 PFAFY 110 (633)
T ss_pred CceEE
Confidence 55443
No 17
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.15 E-value=0.0023 Score=71.52 Aligned_cols=62 Identities=16% Similarity=0.302 Sum_probs=46.7
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-------cCCeeEEEEEEEC---Ce
Q 013544 351 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ 418 (441)
Q Consensus 351 ~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-------LpPGrYEYKFIVD---Ge 418 (441)
.++|+..+| |+.|.|+|+||+|... .+|.+. ..|+|++.+. ++.|. .|||.|. |.
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~ 181 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGR 181 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeC------------CCCEEEEEECCccccccCCCCC-EEEEEEEeCCCc
Confidence 688887777 8999999999999864 679874 6899999986 44553 6777774 54
Q ss_pred --eecCCCC
Q 013544 419 --WKVDPQR 425 (441)
Q Consensus 419 --W~~DPd~ 425 (441)
++.||-.
T Consensus 182 ~~~r~dpya 190 (758)
T PLN02447 182 WVDRIPAWI 190 (758)
T ss_pred EEeecCchH
Confidence 3556643
No 18
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.11 E-value=0.0016 Score=72.36 Aligned_cols=69 Identities=26% Similarity=0.445 Sum_probs=52.7
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEE---CCeee-
Q 013544 348 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQWK- 420 (441)
Q Consensus 348 gL~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIV---DGeW~- 420 (441)
|...|+|+..++ |+.|.|+|+||+|... ++|.+. ..|+|++.+. +.+|. .|||.| ||.+.
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~------------~~GVWelfipg~~~G~-~YKYeI~~~~G~~~~ 202 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR------------IGGFWELFLPRVEAGA-RYKYAITAADGRVLL 202 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceecccC------------CCCEEEEEECCCCCCC-EEEEEEEcCCCeEee
Confidence 345789998887 9999999999999864 678763 6899999985 77883 577777 78764
Q ss_pred -cCCCCCccc
Q 013544 421 -VDPQRESVT 429 (441)
Q Consensus 421 -~DPd~PtVt 429 (441)
.||-.....
T Consensus 203 k~DPYA~~~e 212 (730)
T PRK12568 203 KADPVARQTE 212 (730)
T ss_pred cCCCcceEee
Confidence 677655433
No 19
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.02 E-value=0.0055 Score=51.99 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=51.5
Q ss_pred eEEEEEEec-----CCceEEEEeee---CCCcccc-----ccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 013544 350 EVVEIQYSG-----DGEIVEVAGSF---NGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 415 (441)
Q Consensus 350 ~~VTFtW~~-----~AksVeVaGSF---NnW~~~I-----pM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV 415 (441)
++|+|.... .|..|+|+|+- .+|+... +|.. .....|.+.+.||.| ..+|||++
T Consensus 3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEEE
Confidence 678898864 37899999987 4998632 4542 245789999999999 79999999
Q ss_pred ---CCe--eecCCCCCcccC
Q 013544 416 ---DGQ--WKVDPQRESVTK 430 (441)
Q Consensus 416 ---DGe--W~~DPd~PtVtD 430 (441)
||. |...++.-....
T Consensus 71 ~~~~g~v~WE~g~Nr~~~~p 90 (103)
T cd05820 71 APADGTGTWEGGSNHAYTTP 90 (103)
T ss_pred ECCCCCEEEEeCCCEeEECC
Confidence 553 877776554444
No 20
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=97.02 E-value=0.0064 Score=51.01 Aligned_cols=71 Identities=30% Similarity=0.590 Sum_probs=50.1
Q ss_pred ceEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---C
Q 013544 349 LEVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 416 (441)
Q Consensus 349 L~~VTFtW~~---~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---D 416 (441)
.+.|+|.... .|..|+|+|+- .+|++. ++|.... .+...+.|.+.+.||+| .++|||+| |
T Consensus 6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~--------~t~~~~~W~~~v~lp~~~~veYKy~~~~~~ 77 (106)
T cd05811 6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQ--------YTSSNPLWSVTIPLPAGTSFEYKFIRKESD 77 (106)
T ss_pred EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCccccccc--------CccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence 3567887654 38999999987 489863 5675420 11245789999999988 59999996 2
Q ss_pred C--eeecCCCCCc
Q 013544 417 G--QWKVDPQRES 427 (441)
Q Consensus 417 G--eW~~DPd~Pt 427 (441)
| .|...++.-.
T Consensus 78 ~~~~WE~~~nr~~ 90 (106)
T cd05811 78 GSVTWESDPNRSY 90 (106)
T ss_pred CcEEEecCCCeEE
Confidence 3 3877765443
No 21
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.96 E-value=0.0026 Score=54.41 Aligned_cols=61 Identities=25% Similarity=0.398 Sum_probs=45.1
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCeeec
Q 013544 350 EVVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQWKV 421 (441)
Q Consensus 350 ~~VTFtW~~~-AksVeVaGSFNnW~---~--~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGeW~~ 421 (441)
..++|+..++ |+.|.|.. |++|. + .++|.++. .+..|+|.+.+. +.+|. .|+|.|+|.|..
T Consensus 7 ~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p 74 (119)
T cd02852 7 GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEP 74 (119)
T ss_pred CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCCCC
Confidence 3578987776 99999998 88886 2 35676531 124699999985 78886 699999986543
No 22
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=96.95 E-value=0.0046 Score=51.91 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=48.8
Q ss_pred ceEEEEEEec----CCceEEEEe---eeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---C
Q 013544 349 LEVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 416 (441)
Q Consensus 349 L~~VTFtW~~----~AksVeVaG---SFNnW~~~I-pM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---D 416 (441)
.++|+|.... .+..|+|+| ++.+|+... +|..-. ....+.|.+.+.||+| .++|||++ |
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~---------~~~~~~W~~~~~lp~~~~veyKyv~~~~~ 72 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY---------NSHSNDWRGTVHLPAGRNIEFKAIKKSKD 72 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc---------CCCCCCEEEEEEecCCCcEEEEEEEEcCC
Confidence 3678888743 379999999 567998641 232210 0245789999999999 79999999 4
Q ss_pred C---eeecCCCCCc
Q 013544 417 G---QWKVDPQRES 427 (441)
Q Consensus 417 G---eW~~DPd~Pt 427 (441)
| .|...++.-.
T Consensus 73 ~~~~~WE~g~nr~~ 86 (99)
T cd05809 73 GTNKSWQGGQQSWY 86 (99)
T ss_pred CCeeEEecCCCeeE
Confidence 4 2876665443
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.86 E-value=0.0035 Score=73.18 Aligned_cols=66 Identities=33% Similarity=0.602 Sum_probs=50.2
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEEC---Cee--
Q 013544 348 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW-- 419 (441)
Q Consensus 348 gL~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVD---GeW-- 419 (441)
|...|.|...++ ++.|.|+|+||+|..+ .+|.+. ...|+|++.+. +.+|. .|||.|. |.|
T Consensus 636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~ 703 (1224)
T PRK14705 636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE 703 (1224)
T ss_pred CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence 445788998777 9999999999999864 578763 25799999985 88895 5888884 555
Q ss_pred ecCCCC
Q 013544 420 KVDPQR 425 (441)
Q Consensus 420 ~~DPd~ 425 (441)
+.||-.
T Consensus 704 k~DPyA 709 (1224)
T PRK14705 704 KADPLA 709 (1224)
T ss_pred cCCccc
Confidence 456644
No 24
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.79 E-value=0.0035 Score=68.59 Aligned_cols=67 Identities=31% Similarity=0.451 Sum_probs=50.5
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECC---ee--ec
Q 013544 350 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--KV 421 (441)
Q Consensus 350 ~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDG---eW--~~ 421 (441)
..|+|+..++ |+.|.|.|+||+|... ++|.+. ..|+|.+.+. +.+| ..|||.|+| .+ +.
T Consensus 38 ~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~ 104 (639)
T PRK14706 38 EGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKM 104 (639)
T ss_pred ccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEecc
Confidence 4689988777 9999999999999864 688864 5699999986 4566 468888865 43 66
Q ss_pred CCCCCccc
Q 013544 422 DPQRESVT 429 (441)
Q Consensus 422 DPd~PtVt 429 (441)
||-...+.
T Consensus 105 DPYa~~~~ 112 (639)
T PRK14706 105 DPYGSFFE 112 (639)
T ss_pred CcceEEEe
Confidence 77655443
No 25
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.71 E-value=0.0086 Score=48.59 Aligned_cols=73 Identities=14% Similarity=0.043 Sum_probs=51.6
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEEC-CeeecCCCCCc
Q 013544 350 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRES 427 (441)
Q Consensus 350 ~~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIVD-GeW~~DPd~Pt 427 (441)
..++|...++ |+.|.|.... |. .++|.++ ..|.|++++.--+|. .|+|.|+ |..+.||....
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 4588998877 9999999643 53 5789864 689999998533776 4777776 56889998887
Q ss_pred ccCCCccceEE
Q 013544 428 VTKGGICNNIL 438 (441)
Q Consensus 428 VtD~Gn~NNVL 438 (441)
...+.+-++++
T Consensus 72 ~~~~~~~~s~v 82 (85)
T cd02853 72 QPEGVHGPSQV 82 (85)
T ss_pred CCCCCCCCeEe
Confidence 55433334443
No 26
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.63 E-value=0.0065 Score=51.08 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=36.7
Q ss_pred CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 013544 359 DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 415 (441)
Q Consensus 359 ~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV 415 (441)
.|..|+|+|+- .+|++. ++|... ....|++++.||+| .++|||+|
T Consensus 12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~------------~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 12 FGEAVYISGNCNQLGNWNPSKAKRMQWN------------EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCEEEEEeCcHHHCCCCccccCcccCC------------CCCCEEEEEEECCCCcEEEEEEE
Confidence 38999999995 689854 567642 45689999999988 69999999
No 27
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.61 E-value=0.0047 Score=66.08 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=53.0
Q ss_pred EEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECC-eeecCCCCCcc
Q 013544 352 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV 428 (441)
Q Consensus 352 VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDG-eW~~DPd~PtV 428 (441)
|+|+..++ |++|.|.+. + ..++|.+. ..|+|++++. +.+| |.|+|.||| .-+.||-....
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 57887776 999999972 3 35789874 5799999996 7888 789999999 68889988875
Q ss_pred cCCCccceEE
Q 013544 429 TKGGICNNIL 438 (441)
Q Consensus 429 tD~Gn~NNVL 438 (441)
..+.+..++|
T Consensus 64 ~~~~~~~S~V 73 (542)
T TIGR02402 64 PDGVHGPSQV 73 (542)
T ss_pred ccCCCCCeEE
Confidence 5432223444
No 28
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.57 E-value=0.0098 Score=48.28 Aligned_cols=46 Identities=26% Similarity=0.535 Sum_probs=37.2
Q ss_pred CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCC--e-eEEEEEEE
Q 013544 359 DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP--G-TYEIKFIV 415 (441)
Q Consensus 359 ~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpP--G-rYEYKFIV 415 (441)
.|..|+|+|+. .+|++. ++|... ...+.|.+.+.+|+ | .++|||++
T Consensus 12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~-----------~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 12 FGQSVYVVGSHPELGNWDPAKALRLNTS-----------NSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCEEEEEeCcHHhCCcChhcCccccCC-----------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 48999999998 489853 678653 12689999999999 7 79999998
No 29
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.57 E-value=0.0099 Score=49.17 Aligned_cols=53 Identities=28% Similarity=0.511 Sum_probs=41.5
Q ss_pred EEEEEEec----CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE
Q 013544 351 VVEIQYSG----DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 415 (441)
Q Consensus 351 ~VTFtW~~----~AksVeVaGSF---NnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV 415 (441)
+|+|...+ +++.|+|+|+- .+|+..++|... ..+.|.+.+.||+| .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~------------~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV------------KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC------------CCCCEEEEEEecCCCcEEEEEEE
Confidence 56676654 35778899987 589887888642 45789999999999 59999998
No 30
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.56 E-value=0.0075 Score=66.57 Aligned_cols=66 Identities=29% Similarity=0.467 Sum_probs=49.0
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCe-eEEEEEEEC-Cee--ecC
Q 013544 350 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD 422 (441)
Q Consensus 350 ~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPG-rYEYKFIVD-GeW--~~D 422 (441)
..|+|+...+ |++|.|.|+||+|... .+|.+. ...|+|.+.+. +++| .|.|++..+ |.| ..|
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 199 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD 199 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence 3689998887 9999999999999754 578764 25799999985 6777 677776654 454 445
Q ss_pred CCCC
Q 013544 423 PQRE 426 (441)
Q Consensus 423 Pd~P 426 (441)
|-.-
T Consensus 200 PYa~ 203 (726)
T PRK05402 200 PYAF 203 (726)
T ss_pred CceE
Confidence 5443
No 31
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.47 E-value=0.027 Score=47.17 Aligned_cols=64 Identities=27% Similarity=0.591 Sum_probs=46.7
Q ss_pred EEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe--eEEEEEEE--C--
Q 013544 352 VEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D-- 416 (441)
Q Consensus 352 VTFtW~~----~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG--rYEYKFIV--D-- 416 (441)
|+|+... .+..|+|+|+- .+|++. ++|... ....|.+.+.+|++ .++|||++ +
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~ 69 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS 69 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence 5566544 38899999996 589853 578642 46789999999886 59999998 2
Q ss_pred C--eeecCCCCCc
Q 013544 417 G--QWKVDPQRES 427 (441)
Q Consensus 417 G--eW~~DPd~Pt 427 (441)
| .|..-++.-.
T Consensus 70 ~~~~WE~g~nr~~ 82 (99)
T cd05816 70 GVVSWENGPNREL 82 (99)
T ss_pred CcEEEEcCCCeEE
Confidence 3 2777665544
No 32
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.44 E-value=0.024 Score=47.54 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=50.0
Q ss_pred ceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---
Q 013544 349 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--- 415 (441)
Q Consensus 349 L~~VTFtW~~----~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV--- 415 (441)
.++|+|.... .+..|+|+|+- .+|++. +.|... ......+.|.+.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~--------~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~ 73 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFN--------QVVYQYPNWYYDVSVPAGTTIEFKFIKKNG 73 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccc--------cCCCcCCcEEEEEEcCCCCcEEEEEEEECC
Confidence 4678888753 38999999987 499864 222211 001256789999999999 79999999
Q ss_pred CCe--eecCCCCCccc
Q 013544 416 DGQ--WKVDPQRESVT 429 (441)
Q Consensus 416 DGe--W~~DPd~PtVt 429 (441)
||. |...++.-...
T Consensus 74 ~~~~~WE~g~nr~~~~ 89 (101)
T cd05807 74 DNTVTWESGSNHTYTA 89 (101)
T ss_pred CCCEEEEeCCCEEEeC
Confidence 453 87766554433
No 33
>PLN02316 synthase/transferase
Probab=95.91 E-value=0.097 Score=60.71 Aligned_cols=64 Identities=13% Similarity=0.357 Sum_probs=46.0
Q ss_pred CCceEEEEEEec------CCceEEEEeeeCCCccccc--cCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE-CC
Q 013544 347 SGLEVVEIQYSG------DGEIVEVAGSFNGWHHRIK--MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG 417 (441)
Q Consensus 347 sgL~~VTFtW~~------~AksVeVaGSFNnW~~~Ip--M~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIV-DG 417 (441)
..-.+|++.|+. +..+|.|.|.||+|.+... +..- +...+.++.|.+++.+|+.-|-.-|+. ||
T Consensus 326 ~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~-------~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 326 KAGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLV-------KSEEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred CCCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceee-------cccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 334689999983 3689999999999987421 1110 111224558889999999999999997 66
No 34
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.82 E-value=0.027 Score=61.15 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=50.5
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEEC---Ce--eec
Q 013544 350 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV 421 (441)
Q Consensus 350 ~~VTFtW~~~-AksVeVaGSFNnW~~~-IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVD---Ge--W~~ 421 (441)
..++|+..++ |+.|.|.|+||+|... .+|.+. ...|+|++.+. +.+|. .|+|.|+ |. ++.
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~ 95 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA 95 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence 4688988777 9999999999999754 578753 24799999986 46675 5888884 54 467
Q ss_pred CCCCCccc
Q 013544 422 DPQRESVT 429 (441)
Q Consensus 422 DPd~PtVt 429 (441)
||-.-.+.
T Consensus 96 DPYA~~~~ 103 (613)
T TIGR01515 96 DPYAFYAE 103 (613)
T ss_pred CCCEeeec
Confidence 88665443
No 35
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=95.80 E-value=0.054 Score=45.68 Aligned_cols=65 Identities=26% Similarity=0.447 Sum_probs=46.6
Q ss_pred EEEEEEe-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---CC
Q 013544 351 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 417 (441)
Q Consensus 351 ~VTFtW~-~---~AksVeVaGSFN---nW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---DG 417 (441)
.|+|... + .+..|+|+|+.. +|++. ++|... ....|.+.+.||.| ..+|||++ +|
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~lp~~~~veyKyv~~~~~~ 69 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT------------AYPTWSGSISLPASTNVEWKCLKRNETN 69 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC------------CCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence 4566633 2 389999999884 99854 556532 45789999999999 79999998 22
Q ss_pred -----eeecCCCCCc
Q 013544 418 -----QWKVDPQRES 427 (441)
Q Consensus 418 -----eW~~DPd~Pt 427 (441)
.|...++.-.
T Consensus 70 ~~~~v~WE~g~Nr~~ 84 (97)
T cd05810 70 PTAGVQWQGGGNNQL 84 (97)
T ss_pred CcceEEEeeCCCEEE
Confidence 4766666543
No 36
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.77 E-value=0.018 Score=63.58 Aligned_cols=62 Identities=21% Similarity=0.095 Sum_probs=46.1
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE--CCe--eecCCCC
Q 013544 351 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ--WKVDPQR 425 (441)
Q Consensus 351 ~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIV--DGe--W~~DPd~ 425 (441)
-|+|+..+| |++|.|+|+||+ ....+|.+. ...|+|++.+++..|.. |||.| ||+ .+.||-.
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 567876666 999999999996 445688863 36799999999888843 55555 885 5557655
No 37
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=94.89 E-value=0.091 Score=43.93 Aligned_cols=65 Identities=18% Similarity=0.410 Sum_probs=44.1
Q ss_pred EEEEEec--C-CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---CCe-
Q 013544 352 VEIQYSG--D-GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DGQ- 418 (441)
Q Consensus 352 VTFtW~~--~-AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---DGe- 418 (441)
|+|...+ . |+.|+|+|+- .+|+.. ++|... .+.....|.+.+.+|++ .++|||+| ||.
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~---------~~~~~~~W~~~v~~~~~~~veYky~v~~~~~~~ 72 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPS---------HQGDVLVWSGSISVPPGFSSEYNYYVVDDRKSV 72 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeec---------CCCCCCEEEEEEEeCCCCcEEEEEEEEcCCCcE
Confidence 4555443 3 8999999987 589754 567531 01234589999999988 69999999 342
Q ss_pred --eecCCCC
Q 013544 419 --WKVDPQR 425 (441)
Q Consensus 419 --W~~DPd~ 425 (441)
|-..++.
T Consensus 73 ~~wE~g~nr 81 (101)
T cd05815 73 LRSESGEKR 81 (101)
T ss_pred EEeecCCCE
Confidence 6555543
No 38
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.12 E-value=0.15 Score=55.35 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=47.0
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-cCCe-eEEEEEEECCe--ee
Q 013544 351 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVDGQ--WK 420 (441)
Q Consensus 351 ~VTFtW~~~-AksVeVaGSFNnW~~-----~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPG-rYEYKFIVDGe--W~ 420 (441)
.|+|+..++ |++|.|.+ |++|.. .++|.+. ..|+|++.+. +.+| .|.|++-.+|. ++
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~ 86 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGYFYTYQVCINGKWRET 86 (605)
T ss_pred eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCCEEEEEEEcCCCeEEE
Confidence 489988777 99999997 888853 4678763 5799999996 5666 44444444565 48
Q ss_pred cCCCCCccc
Q 013544 421 VDPQRESVT 429 (441)
Q Consensus 421 ~DPd~PtVt 429 (441)
.||-...+.
T Consensus 87 ~DPya~~~~ 95 (605)
T TIGR02104 87 VDPYAKAVT 95 (605)
T ss_pred cCCCcceec
Confidence 888665543
No 39
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=93.96 E-value=0.13 Score=42.90 Aligned_cols=63 Identities=24% Similarity=0.550 Sum_probs=39.0
Q ss_pred EEEEEEec------CCceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE-CC--ee
Q 013544 351 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--QW 419 (441)
Q Consensus 351 ~VTFtW~~------~AksVeVaGSFNnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIV-DG--eW 419 (441)
+|+|.|.. ++..|.+.+.|++|+.. +.|.+.. .....+.|.+++.+|..-|+..|+. || .|
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~--------~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w 74 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMC--------VPDEGGWWKATVDVPEDAYVMDFVFNDGAGNW 74 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEES--------S---TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceee--------eeecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence 68888843 36889999999999865 4565421 1123799999999999999999998 65 56
Q ss_pred ec
Q 013544 420 KV 421 (441)
Q Consensus 420 ~~ 421 (441)
-.
T Consensus 75 DN 76 (87)
T PF03423_consen 75 DN 76 (87)
T ss_dssp ES
T ss_pred eC
Confidence 43
No 40
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=93.76 E-value=0.54 Score=41.51 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=38.3
Q ss_pred EEecCCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe----eEEEEEEE
Q 013544 355 QYSGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV 415 (441)
Q Consensus 355 tW~~~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG----rYEYKFIV 415 (441)
++-.++.+|+|+|+- .+|+.. ++|....-+ ........|.+.+.|++| .++|||+.
T Consensus 10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt-----~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKA-----LSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred eecCCCCEEEEEECchhcCCCCccccccccccccc-----ccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 344468999999986 599854 556542000 000234579999999986 69999998
No 41
>PLN02316 synthase/transferase
Probab=93.60 E-value=0.28 Score=57.04 Aligned_cols=56 Identities=27% Similarity=0.427 Sum_probs=44.1
Q ss_pred ceEEEEEEecC------CceEEEEeeeCCCcccc------ccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE
Q 013544 349 LEVVEIQYSGD------GEIVEVAGSFNGWHHRI------KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 415 (441)
Q Consensus 349 L~~VTFtW~~~------AksVeVaGSFNnW~~~I------pM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIV 415 (441)
-.+|++.|+.. ..+|++.|+||.|.+.- +|.+. ...+.|.+++.+|...|-..|+-
T Consensus 490 G~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~-----------~~g~~~~a~v~vP~da~~mdfvF 557 (1036)
T PLN02316 490 GTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPA-----------DNGSHLKATVKVPLDAYMMDFVF 557 (1036)
T ss_pred CCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeec-----------CCCceEEEEEEccccceEEEEEE
Confidence 46899999752 58899999999998762 35543 23456689999999999999987
No 42
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=92.11 E-value=0.67 Score=48.37 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=56.4
Q ss_pred CCceEEEEEEecC-C-------ceEEEEeeeCCCc------cccccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEE
Q 013544 347 SGLEVVEIQYSGD-G-------EIVEVAGSFNGWH------HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEI 411 (441)
Q Consensus 347 sgL~~VTFtW~~~-A-------ksVeVaGSFNnW~------~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEY 411 (441)
.+.+.|||-|.++ + ..|+|- .|+.. ....|.+-+ .+.+|..++.||.. +-.|
T Consensus 36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~--~n~~tdh~~~~~~~~l~rl~-----------~tDvW~~~~~~p~~~r~sY 102 (411)
T PRK10439 36 DGMVRVTFWWRDPQGDEEHSTIRRVWIY--INGVTDHHQNSQPQSLQRIA-----------GTDVWQWSTELSANWRGSY 102 (411)
T ss_pred CCcEEEEEEeeCCCCCcccccceeEEEe--CCCCCCcCccCCcchhhccC-----------CCceEEEEEEECcccEEEE
Confidence 4568999999985 2 258873 33333 333687763 57899999999999 8999
Q ss_pred EEEEC---C-------------------------eeecCCCCCcccC--CCccceEEEe
Q 013544 412 KFIVD---G-------------------------QWKVDPQRESVTK--GGICNNILRV 440 (441)
Q Consensus 412 KFIVD---G-------------------------eW~~DPd~PtVtD--~Gn~NNVL~V 440 (441)
+|+++ . .=+.||.||.... .|...|+|++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l 161 (411)
T PRK10439 103 CFIPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM 161 (411)
T ss_pred EEEeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence 99993 1 1148999998653 2444577664
No 43
>PLN02950 4-alpha-glucanotransferase
Probab=91.89 E-value=0.91 Score=52.30 Aligned_cols=70 Identities=20% Similarity=0.378 Sum_probs=52.2
Q ss_pred ceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe--eEEEEEEE--
Q 013544 349 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV-- 415 (441)
Q Consensus 349 L~~VTFtW~~----~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG--rYEYKFIV-- 415 (441)
.+.|+|+... .|..|+|+|+- .+|++. ++|.. .....|.+.+.++.+ ..+|||++
T Consensus 152 ~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~~ 219 (909)
T PLN02950 152 EIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQT 219 (909)
T ss_pred ceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEEc
Confidence 4678888654 38999999987 599864 45653 246789999999988 59999998
Q ss_pred -CCe--eecCCCCCcccC
Q 013544 416 -DGQ--WKVDPQRESVTK 430 (441)
Q Consensus 416 -DGe--W~~DPd~PtVtD 430 (441)
+|. |-..++.-....
T Consensus 220 ~~g~v~WE~g~NR~~~~p 237 (909)
T PLN02950 220 AEGLVSLELGVNRELSLD 237 (909)
T ss_pred CCCceEEeeCCCceeecC
Confidence 453 877776655443
No 44
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=91.84 E-value=0.95 Score=40.10 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=53.5
Q ss_pred eEEEEEEe----cCCceEEEEeeeCCCcccc-----ccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEECCe-
Q 013544 350 EVVEIQYS----GDGEIVEVAGSFNGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ- 418 (441)
Q Consensus 350 ~~VTFtW~----~~AksVeVaGSFNnW~~~I-----pM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIVDGe- 418 (441)
..|||.|. +....|.|-|..|++..+. .|.+- ..+.+|..++.||.+ +=.|.|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~ 70 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD 70 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence 47999999 3468899999999996542 46654 256899999999999 89999997533
Q ss_pred ---------------eecCCCCCccc-C----CCccceEEE
Q 013544 419 ---------------WKVDPQRESVT-K----GGICNNILR 439 (441)
Q Consensus 419 ---------------W~~DPd~PtVt-D----~Gn~NNVL~ 439 (441)
=+.||-||... . .|..-++++
T Consensus 71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~ 111 (122)
T PF11806_consen 71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE 111 (122)
T ss_dssp -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence 36799999754 2 367777765
No 45
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=91.40 E-value=0.47 Score=52.80 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=42.4
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCee
Q 013544 351 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 419 (441)
Q Consensus 351 ~VTFtW~~~-AksVeVaGSFNnW~~----~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGeW 419 (441)
.|+|...++ |..|.|. .|++|.. .++|.+. ..|+|.+.+. +.+|.| |+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPER------------TDDIWHGYLPGAQPGQL-YGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccC------------CCCEEEEEECCCCCCCE-EEEEEeeee
Confidence 588988777 8999986 6776652 3578653 5799999995 788875 999999854
No 46
>PLN02950 4-alpha-glucanotransferase
Probab=89.04 E-value=1.9 Score=49.82 Aligned_cols=67 Identities=18% Similarity=0.440 Sum_probs=47.1
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEcCCe-eEEEEEEE---CC
Q 013544 350 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 417 (441)
Q Consensus 350 ~~VTFtW~~---~AksVeVaGSF---NnW~~~--IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG-rYEYKFIV---DG 417 (441)
+.|+|..++ -|..|.|+|+- .+|+.. ++|... .+.....|++++.|+.| ..+|||+| ||
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~---------~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g 79 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPV---------HQGDELVWEGSVSVPEGFSCEYSYYVVDDNK 79 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccc---------cCCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence 556666554 38999999998 489754 667532 11234589999999988 69999995 44
Q ss_pred e---eecCCCC
Q 013544 418 Q---WKVDPQR 425 (441)
Q Consensus 418 e---W~~DPd~ 425 (441)
. |-..++.
T Consensus 80 ~vi~WE~g~NR 90 (909)
T PLN02950 80 NVLRWEAGKKR 90 (909)
T ss_pred ceeeeecCCCe
Confidence 3 7666643
No 47
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=88.10 E-value=1.2 Score=52.39 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=47.5
Q ss_pred EEEEEEecC-CceEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCcEEEEEE-cCCe-----eEEEEEEECC--
Q 013544 351 VVEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG-- 417 (441)
Q Consensus 351 ~VTFtW~~~-AksVeVaGS-FNnW~~---~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPG-----rYEYKFIVDG-- 417 (441)
.++|+..++ |..|.|.+- +++|.. .++|.+. ..|+|++.+. +.+| -|.|+|.|+|
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~ 395 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGG 395 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCC
Confidence 378988777 999999984 456653 4788863 6899999986 4443 3788999976
Q ss_pred --eeecCCCCCc
Q 013544 418 --QWKVDPQRES 427 (441)
Q Consensus 418 --eW~~DPd~Pt 427 (441)
..+.||-...
T Consensus 396 ~~~~~~DPYA~a 407 (1111)
T TIGR02102 396 DKVLALDPYAKS 407 (1111)
T ss_pred ceEEEeChhheE
Confidence 4577875543
No 48
>PRK03705 glycogen debranching enzyme; Provisional
Probab=87.08 E-value=1.2 Score=49.44 Aligned_cols=55 Identities=24% Similarity=0.399 Sum_probs=41.9
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCee
Q 013544 351 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 419 (441)
Q Consensus 351 ~VTFtW~~~-AksVeVaGSFNnW~--~~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGeW 419 (441)
.|+|+..++ |..|.|.. |++|. ..++|.+. ..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPAR------------SGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeec------------cCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 588988777 89999996 76653 34678652 5799999985 67775 4999999854
No 49
>PLN02960 alpha-amylase
Probab=85.58 E-value=0.77 Score=52.86 Aligned_cols=59 Identities=19% Similarity=0.377 Sum_probs=41.6
Q ss_pred EEEEE-EecCCceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEE--EcCCee-------EEEEEEEC
Q 013544 351 VVEIQ-YSGDGEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPGT-------YEIKFIVD 416 (441)
Q Consensus 351 ~VTFt-W~~~AksVeVaGSFNnW~~~I-pM~kd~ss~~~~~~~tkesG~FsttL--~LpPGr-------YEYKFIVD 416 (441)
.|.|. |--+|..+.|+|+||||.+.- .|.+ ..-++.+-|+|.+++ .|.+|. -||.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRARE-------GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhc-------ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 56665 544599999999999999763 3442 112345789999998 488882 36778775
No 50
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=84.13 E-value=4.7 Score=33.37 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=38.0
Q ss_pred eEEEEEEec---CCceEEEEeeeCC--Cc-cccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE
Q 013544 350 EVVEIQYSG---DGEIVEVAGSFNG--WH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 415 (441)
Q Consensus 350 ~~VTFtW~~---~AksVeVaGSFNn--W~-~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIV 415 (441)
.+|+|+... +...|.|.---+. |. ..++|.+..+ +.....|.+++.++.|++.|.|+|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~--------~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGS--------DELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeee--------CCceeEEEEEEecCCcEEEEEEEE
Confidence 456666643 3678888655443 22 2478876521 112246999999888999999999
No 51
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=82.93 E-value=4.5 Score=46.87 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=48.4
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEEC------Ce-
Q 013544 350 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ- 418 (441)
Q Consensus 350 ~~VTFtW~~~-AksVeVaGSFNnW~--~~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVD------Ge- 418 (441)
..|+|+..++ |+.|.|.+.+++|. ..++|.++ ...|+|++.+. ...|.| |+|.|+ |.
T Consensus 135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~~-Y~Y~V~v~~p~~G~v 202 (898)
T TIGR02103 135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGAY-YRYEVTVYHPSTGKV 202 (898)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCCE-eEEEEEEecCCCCeE
Confidence 4689998887 89999997776664 24678764 25799999985 566653 777775 54
Q ss_pred ---eecCCCCCccc
Q 013544 419 ---WKVDPQRESVT 429 (441)
Q Consensus 419 ---W~~DPd~PtVt 429 (441)
.+.||-...+.
T Consensus 203 ~~~~v~DPYA~als 216 (898)
T TIGR02103 203 ETYLVTDPYSVSLS 216 (898)
T ss_pred CCeEEeCcCcceEc
Confidence 36788665544
No 52
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=77.47 E-value=6.8 Score=46.72 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=43.3
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc----cccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEECCee
Q 013544 350 EVVEIQYSGD-GEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 419 (441)
Q Consensus 350 ~~VTFtW~~~-AksVeVaGSFNnW~~~----IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVDGeW 419 (441)
..|+|....+ +..|.|. .|+.|... ++|.. +..++|.+.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~------------~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG------------RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC------------CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 4689987776 8999997 89988643 55643 35789999875 88897 6999999865
No 53
>PLN03244 alpha-amylase; Provisional
Probab=61.59 E-value=6.5 Score=45.39 Aligned_cols=60 Identities=18% Similarity=0.403 Sum_probs=40.2
Q ss_pred EEEE-EEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE--EcCCee----E---EEEEEEC
Q 013544 351 VVEI-QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPGT----Y---EIKFIVD 416 (441)
Q Consensus 351 ~VTF-tW~~~AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL--~LpPGr----Y---EYKFIVD 416 (441)
.++| .|.-+|.--.|.|+||||.+.-...+. ..-++.+-|+|.+.+ .|.+|. | ||.|.-|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAARE------GHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCcccccccc------ccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 3444 476678999999999999976433321 112334789999998 488872 3 6666544
No 54
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=58.60 E-value=19 Score=29.75 Aligned_cols=58 Identities=26% Similarity=0.294 Sum_probs=38.8
Q ss_pred eEEEEEEecCC---ceEEEEeee-CCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE-C-CeeecC
Q 013544 350 EVVEIQYSGDG---EIVEVAGSF-NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-D-GQWKVD 422 (441)
Q Consensus 350 ~~VTFtW~~~A---ksVeVaGSF-NnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIV-D-GeW~~D 422 (441)
-.|.+.+.++. ..|+|.++- ..| ++|.+. -...|.+.-.++.|-+.+|+-. | |+|..-
T Consensus 14 l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~------------wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 14 LAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRS------------WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEEECCTTS-EEEEEEEETTSSS----EE-EEE------------CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecC------------cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 45777777652 679999554 458 688864 3568998777777889999988 7 887764
No 55
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=57.24 E-value=12 Score=28.81 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCChHHHHHhc
Q 013544 62 EELYNDLREFLSTVGLSES-HVPSMKELSAHG 92 (441)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~-~vps~kel~~hg 92 (441)
+.+...|++-+.+-.+|+| .+||.++|+++=
T Consensus 3 ~~i~~~l~~~I~~g~~~~g~~lps~~~la~~~ 34 (64)
T PF00392_consen 3 EQIYDQLRQAILSGRLPPGDRLPSERELAERY 34 (64)
T ss_dssp HHHHHHHHHHHHTTSS-TTSBE--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCEeCCHHHHHHHh
Confidence 4678899999999999998 689999999863
No 56
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=53.32 E-value=38 Score=30.90 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=35.2
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEE
Q 013544 348 GLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 412 (441)
Q Consensus 348 gL~~VTFtW~~~-AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYK 412 (441)
.--+|+|+|... ++.|...++..-|... .+.- +.+..|+.++.- ||.|.|+
T Consensus 60 pGDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~------------~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 60 PGDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKA------------GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CCCEEEEEECCCCCceEEEeCCCCccccc-cccc------------CCCcceEEEecc-cceEEEE
Confidence 345799999987 9999999988655542 2221 134566666655 9999986
No 57
>PLN02877 alpha-amylase/limit dextrinase
Probab=52.67 E-value=44 Score=39.47 Aligned_cols=52 Identities=12% Similarity=0.195 Sum_probs=36.6
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-cCCeeEEEEEEEC
Q 013544 350 EVVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD 416 (441)
Q Consensus 350 ~~VTFtW~~~-AksVeVaGSFNnW~~-----~IpM~kd~ss~~~~~~~tkesG~FsttL~-LpPGrYEYKFIVD 416 (441)
..++|+..++ |..|.|.- |++|.. .++|. ...|+|++.+. ...| +.|+|.|+
T Consensus 222 ~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-------------~~~GVWsv~v~~~~~G-~~Y~Y~V~ 280 (970)
T PLN02877 222 DAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-------------ESNGVWSVEGPKSWEG-CYYVYEVS 280 (970)
T ss_pred CCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-------------CCCCEEEEEeccCCCC-CeeEEEEe
Confidence 3688988777 89999984 665532 23464 25899999986 4566 44778786
No 58
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=51.77 E-value=28 Score=29.92 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=41.6
Q ss_pred EEEEEEec---CCceEEEE-eeeCCC----c-cccccCCCCCCCccccccccCCCcEEEEEEcCCeeEEEEEEE--CCe-
Q 013544 351 VVEIQYSG---DGEIVEVA-GSFNGW----H-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ- 418 (441)
Q Consensus 351 ~VTFtW~~---~AksVeVa-GSFNnW----~-~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPGrYEYKFIV--DGe- 418 (441)
+|+|+.+. +..+|.|. |+-..| . ..++|.+.. .+..-..|.+++.++..+..|.|.| +|+
T Consensus 22 ~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~--------~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~ 93 (120)
T PF02903_consen 22 TLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIA--------SDELFDYYEATLKLPEKRLRYYFELEDGGET 93 (120)
T ss_dssp EEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEE--------EESSEEEEEEEEE-TTSEEEEEEEEEETTEE
T ss_pred EEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEE--------eCCCeEEEEEEEECCCCeEEEEEEEEeCCEE
Confidence 55555543 47888885 666666 1 236787641 1223458899999999988888887 444
Q ss_pred eecCCCC
Q 013544 419 WKVDPQR 425 (441)
Q Consensus 419 W~~DPd~ 425 (441)
|..+...
T Consensus 94 ~~y~~~G 100 (120)
T PF02903_consen 94 YYYGERG 100 (120)
T ss_dssp EEEETTE
T ss_pred EEEeCCc
Confidence 5555544
No 59
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=49.87 E-value=21 Score=25.72 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCCCC-CCCChHHHHHhchhh
Q 013544 64 LYNDLREFLSTVGLSES-HVPSMKELSAHGRDD 95 (441)
Q Consensus 64 l~~d~~ef~s~~~lp~~-~vps~kel~~hgr~d 95 (441)
++..|+..+....++++ ++||.+||+++=-..
T Consensus 1 i~~~l~~~i~~~~~~~~~~l~s~~~la~~~~vs 33 (60)
T smart00345 1 VAERLREDIVSGELRPGDKLPSERELAAQLGVS 33 (60)
T ss_pred CHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCCC
Confidence 35677888888877665 589999999875443
No 60
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=49.65 E-value=42 Score=30.61 Aligned_cols=46 Identities=22% Similarity=0.399 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCCCC-CCCChHHHHHhchhhHHHHHHhhhHHHHHH
Q 013544 63 ELYNDLREFLSTVGLSES-HVPSMKELSAHGRDDLANIVRRRGYKFIRQ 110 (441)
Q Consensus 63 ~l~~d~~ef~s~~~lp~~-~vps~kel~~hgr~dlan~vrrrg~k~i~~ 110 (441)
.+++-|++=+.+=-|+|| +|||+|||+.+=.+-.. -| .|+|+-..+
T Consensus 15 QI~~qIk~~I~~g~l~pGdkLPSvRelA~~~~VNpn-Tv-~raY~eLE~ 61 (125)
T COG1725 15 QIANQIKEQIASGELKPGDKLPSVRELAKDLGVNPN-TV-QRAYQELER 61 (125)
T ss_pred HHHHHHHHHHHhCCcCCCCCCCcHHHHHHHhCCCHH-HH-HHHHHHHHH
Confidence 466667777777777776 69999999987666553 34 457765443
No 61
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=49.55 E-value=18 Score=41.44 Aligned_cols=42 Identities=24% Similarity=0.462 Sum_probs=31.3
Q ss_pred EEEEEecC-CceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEc
Q 013544 352 VEIQYSGD-GEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWL 404 (441)
Q Consensus 352 VTFtW~~~-AksVeVaGSFNnW~~~I-pM~kd~ss~~~~~~~tkesG~FsttL~L 404 (441)
|+++-.++ +..|.++|+||+|+... .|.. +...|.|++.+.-
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~-----------k~~~g~w~i~l~~ 158 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKP-----------KDDLGVWEIDLPP 158 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCc-----------ccccceeEEecCc
Confidence 78876666 89999999999998742 2331 1367899988763
No 62
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=46.87 E-value=72 Score=27.65 Aligned_cols=73 Identities=21% Similarity=0.228 Sum_probs=40.9
Q ss_pred EEEEEEecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcCCe--------eEEEEEEECCe--
Q 013544 351 VVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--------TYEIKFIVDGQ-- 418 (441)
Q Consensus 351 ~VTFtW~~~--AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~LpPG--------rYEYKFIVDGe-- 418 (441)
..++...+- .+.|.|-=+||+|.....+.-.................|...+.|++. .+-.+|.|+|.
T Consensus 22 ~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ey 101 (113)
T PF03370_consen 22 SGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQEY 101 (113)
T ss_dssp EEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTEEE
T ss_pred EEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCCEE
Confidence 344555543 588999999999986544321100000000111233478888887654 57789999996
Q ss_pred eecCC
Q 013544 419 WKVDP 423 (441)
Q Consensus 419 W~~DP 423 (441)
|-.+.
T Consensus 102 WDNN~ 106 (113)
T PF03370_consen 102 WDNNN 106 (113)
T ss_dssp EESTT
T ss_pred ecCCC
Confidence 65543
No 63
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=46.61 E-value=19 Score=40.59 Aligned_cols=63 Identities=30% Similarity=0.350 Sum_probs=49.4
Q ss_pred hhhhhccchhh-------hHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccccccccchH
Q 013544 275 SEARRRENQLE-------IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDE 337 (441)
Q Consensus 275 ~~~~~~~n~~e-------~~~l~~m~~q~ele~~r~k~q~e~~K~~lsvlq~K~~~~i~~A~~Ll~eKd~ 337 (441)
+|+.|.+=+.| |+++|..+-|+++|++++|.+||.+.-++--+......++.-...||-.+.+
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~p 167 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIP 167 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCc
Confidence 55555555555 4678999999999999999999999988887777777777777777766655
No 64
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=43.95 E-value=48 Score=35.23 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=30.6
Q ss_pred EEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE--cCCeeEEEEEEECCe
Q 013544 363 VEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQ 418 (441)
Q Consensus 363 VeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~--LpPGrYEYKFIVDGe 418 (441)
=.+.|+|..=. ..+.-. ..+|+|+..+. .+||.|+..+.+||.
T Consensus 151 ~~vvg~f~DdG--~g~DE~-----------p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 151 PIVVGEFEDDG--EGLDER-----------PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred CEEEEeeccCC--ccCCCC-----------CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 35778885332 233322 36899998875 589999999999985
No 65
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.48 E-value=40 Score=37.47 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=21.3
Q ss_pred CCCcEEEEEEcCCe-eEEEEEEECC
Q 013544 394 KSRLWSTVLWLYPG-TYEIKFIVDG 417 (441)
Q Consensus 394 esG~FsttL~LpPG-rYEYKFIVDG 417 (441)
.+|.|-+.+.++|| .|.|+|.||+
T Consensus 96 ~DG~~~TqCPI~Pg~~~tY~F~v~~ 120 (563)
T KOG1263|consen 96 QDGVYITQCPIQPGENFTYRFTVKD 120 (563)
T ss_pred ccCCccccCCcCCCCeEEEEEEeCC
Confidence 36689999999999 8999999994
No 66
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=39.69 E-value=50 Score=23.63 Aligned_cols=30 Identities=23% Similarity=0.572 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCCCCCCChHHHHHhchhhHHHHHHh
Q 013544 66 NDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRR 102 (441)
Q Consensus 66 ~d~~ef~s~~~lp~~~vps~kel~~hgr~dlan~vrr 102 (441)
.||++|+...|+|..+-. .-|.+|-+.||+
T Consensus 7 ~~L~~wL~~~gi~~~~~~-------~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA-------KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCCCCCCC-------CCHHHHHHHHHH
Confidence 689999999999876554 557777777765
No 67
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=37.10 E-value=43 Score=31.30 Aligned_cols=30 Identities=10% Similarity=0.283 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 013544 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (441)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~~-vps~kel~~h 91 (441)
+.+.++|++-+-.=.+|+|. +||.+||+++
T Consensus 11 ~~i~~~l~~~I~~g~~~~G~~LPsE~eLa~~ 41 (238)
T TIGR02325 11 RQIADKIEQEIAAGHLRAGDYLPAEMQLAER 41 (238)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHH
Confidence 67889999999998898886 9999999986
No 68
>TIGR03337 phnR transcriptional regulator protein. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii.
Probab=35.47 E-value=71 Score=29.71 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHHHhchh
Q 013544 62 EELYNDLREFLSTVGLSESH-VPSMKELSAHGRD 94 (441)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~~-vps~kel~~hgr~ 94 (441)
+.+.++|++-+..-++++|. +||.+||++.=.+
T Consensus 4 ~qi~~~l~~~I~~g~~~~g~~lPsE~eLa~~~~V 37 (231)
T TIGR03337 4 LYIKDHLSYQIRAGALLPGDKLPSERDLGERFNT 37 (231)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCC
Confidence 46789999999999998885 9999999987443
No 69
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=34.82 E-value=49 Score=31.13 Aligned_cols=30 Identities=30% Similarity=0.508 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 013544 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (441)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~~-vps~kel~~h 91 (441)
+.+.++|++-+..-.++||. +||-+||+++
T Consensus 3 ~qi~~~l~~~I~~g~~~~G~~LPsE~eLa~~ 33 (233)
T TIGR02404 3 EQIYQDLEQKITHGQYKEGDYLPSEHELMDQ 33 (233)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 46789999999999999995 9999999987
No 70
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=33.64 E-value=14 Score=31.24 Aligned_cols=14 Identities=57% Similarity=1.486 Sum_probs=0.0
Q ss_pred ccccCCCCCceeeEEEeeec
Q 013544 19 LWQWHPPRKHLSFTICCASS 38 (441)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~s 38 (441)
+||||| |||.+++.
T Consensus 47 ~~q~HP------FTIas~~~ 60 (105)
T PF08022_consen 47 FWQWHP------FTIASSPE 60 (105)
T ss_dssp --------------------
T ss_pred cccccc------cEeeccCC
Confidence 799998 78755544
No 71
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=33.06 E-value=55 Score=30.78 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 013544 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (441)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~~-vps~kel~~h 91 (441)
+++.++|++-+..=.++||. +||-+||++.
T Consensus 4 ~qi~~~l~~~I~~g~~~~g~~LPsE~eLa~~ 34 (230)
T TIGR02018 4 QRIKQDILERIRSGEWPPGHRIPSEHELVAQ 34 (230)
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHH
Confidence 46889999999999999987 9999999975
No 72
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=32.99 E-value=71 Score=30.68 Aligned_cols=40 Identities=33% Similarity=0.784 Sum_probs=23.6
Q ss_pred CCCccccccCCCCCCCccccccccCCCcEEEEEEc-CCeeEEEEEE--EC--CeeecC
Q 013544 370 NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWL-YPGTYEIKFI--VD--GQWKVD 422 (441)
Q Consensus 370 NnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~L-pPGrYEYKFI--VD--GeW~~D 422 (441)
..|+ .++|... .+..|...+.+ .+|.|+|+.. +| +.|.++
T Consensus 55 ~~w~-~vpM~~~------------gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQ-EVPMTPL------------GNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EES------------TS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Ccce-eeccccC------------CCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 4686 4899863 67899999976 7899999976 45 346553
No 73
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=32.93 E-value=91 Score=25.99 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=9.6
Q ss_pred CcEEEEE-EcCCeeEEE
Q 013544 396 RLWSTVL-WLYPGTYEI 411 (441)
Q Consensus 396 G~FsttL-~LpPGrYEY 411 (441)
..++.++ .++||+|+|
T Consensus 74 ~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEF 90 (104)
T ss_dssp -EEEEEEEE-S-EEEEE
T ss_pred CEEEEEEcCCCCEEEEE
Confidence 4566665 799999887
No 74
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=32.74 E-value=1.4e+02 Score=26.56 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=11.7
Q ss_pred eEEEEEEecCCceEEE
Q 013544 350 EVVEIQYSGDGEIVEV 365 (441)
Q Consensus 350 ~~VTFtW~~~AksVeV 365 (441)
-+|+|+|...++.|..
T Consensus 23 dTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 23 DTVTFVPTDKGHNVET 38 (116)
T ss_pred CEEEEEECCCCeeEEE
Confidence 4788888877776664
No 75
>PRK14999 histidine utilization repressor; Provisional
Probab=32.24 E-value=56 Score=31.02 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 013544 61 NEELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (441)
Q Consensus 61 ~~~l~~d~~ef~s~~~lp~~~-vps~kel~~h 91 (441)
=+.+.++|++-+..-.++||. +||-+||++.
T Consensus 14 y~qi~~~i~~~I~~g~~~~G~~LPsE~eLa~~ 45 (241)
T PRK14999 14 YETVKQDICKKIAGGVWQPHDRIPSEAELVAQ 45 (241)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCHHHHHHH
Confidence 378889999999999999996 9999999986
No 76
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=30.11 E-value=51 Score=27.21 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCCCCCCChHHHHHhchhhHHHHHHhhhHHHHHHH
Q 013544 77 LSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQL 111 (441)
Q Consensus 77 lp~~~vps~kel~~hgr~dlan~vrrrg~k~i~~l 111 (441)
+|--|+++..||.+..+.+||.+++ .+.+.+++.
T Consensus 42 iPk~h~~~~~~l~~~~~~~l~~~~~-~~~~~l~~~ 75 (104)
T cd01278 42 IPKEHIASLKALTKEDVPLLEHMET-VGREKLLRS 75 (104)
T ss_pred EecCCCCChHHCCHhHHHHHHHHHH-HHHHHHHHH
Confidence 4777999999999999999999988 777766654
No 77
>PRK12423 LexA repressor; Provisional
Probab=30.01 E-value=55 Score=30.84 Aligned_cols=43 Identities=21% Similarity=0.401 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCChHHHHHhchhhH--HHHHHhhhHHHHHHHHh
Q 013544 61 NEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDL--ANIVRRRGYKFIRQLLK 113 (441)
Q Consensus 61 ~~~l~~d~~ef~s~~~lp~~~vps~kel~~hgr~dl--an~vrrrg~k~i~~lls 113 (441)
..+++.-|++|+..-|+| ||.+||+++ .++ -+.|| ++++.|-.
T Consensus 8 q~~il~~l~~~i~~~g~~----Ps~~eia~~--~g~~s~~~v~----~~l~~L~~ 52 (202)
T PRK12423 8 RAAILAFIRERIAQAGQP----PSLAEIAQA--FGFASRSVAR----KHVQALAE 52 (202)
T ss_pred HHHHHHHHHHHHHHcCCC----CCHHHHHHH--hCCCChHHHH----HHHHHHHH
Confidence 468999999999999999 999999984 343 24555 46666654
No 78
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=28.60 E-value=2e+02 Score=25.79 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=19.1
Q ss_pred EcCCeeEEEEEEE---CCeeecCCCCCc
Q 013544 403 WLYPGTYEIKFIV---DGQWKVDPQRES 427 (441)
Q Consensus 403 ~LpPGrYEYKFIV---DGeW~~DPd~Pt 427 (441)
.|+||+|.++-.+ ++.|....+..+
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F~I 129 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDFTI 129 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEEEE
Confidence 6899999999888 346988765443
No 79
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=26.45 E-value=1.6e+02 Score=25.95 Aligned_cols=27 Identities=26% Similarity=0.727 Sum_probs=19.8
Q ss_pred CCcEEEEEEcCCeeEEEEEEECCeeecCCCC
Q 013544 395 SRLWSTVLWLYPGTYEIKFIVDGQWKVDPQR 425 (441)
Q Consensus 395 sG~FsttL~LpPGrYEYKFIVDGeW~~DPd~ 425 (441)
.-.|... |.|=|+|.|. +|.|+++-+.
T Consensus 57 ~QIWlas---~sG~~hf~~~-~~~W~~~r~g 83 (105)
T PRK00446 57 HELWLAA---KSGGFHFDYK-DGEWICDRSG 83 (105)
T ss_pred hheeEec---CCCCccceec-CCeEEECCCC
Confidence 4577766 4677888885 9999998544
No 80
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=24.83 E-value=72 Score=23.96 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=14.7
Q ss_pred EEE-EEcCCeeEEEEEEE---CCeeecCC
Q 013544 399 STV-LWLYPGTYEIKFIV---DGQWKVDP 423 (441)
Q Consensus 399 stt-L~LpPGrYEYKFIV---DGeW~~DP 423 (441)
.+. ..||||.|.++-.+ +|.|..++
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 444 47999999988776 57887765
No 81
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=24.33 E-value=53 Score=24.35 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=13.6
Q ss_pred chhhHHHHHHhhhHHHH
Q 013544 92 GRDDLANIVRRRGYKFI 108 (441)
Q Consensus 92 gr~dlan~vrrrg~k~i 108 (441)
-..+++.+.|..||.|=
T Consensus 28 ~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFT 44 (49)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 45677888999999874
No 82
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=24.07 E-value=1.6e+02 Score=26.15 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=26.6
Q ss_pred cchhhhHHHHHhhhhHHHHHHHHHHHHHHHHhhhhh
Q 013544 281 ENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSV 316 (441)
Q Consensus 281 ~n~~e~~~l~~m~~q~ele~~r~k~q~e~~K~~lsv 316 (441)
=|+.|..+...+..+.+-+...+|.+|++.|..|..
T Consensus 71 ~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ 106 (139)
T PF05615_consen 71 MNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEE 106 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455577777777777777788888888877777754
No 83
>PRK04984 fatty acid metabolism regulator; Provisional
Probab=24.05 E-value=98 Score=29.10 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 013544 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (441)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~~-vps~kel~~h 91 (441)
+.++..|++.+-.=.|+||. +||.+||+..
T Consensus 10 ~~~~~~l~~~I~~g~l~pG~~LPsE~eLae~ 40 (239)
T PRK04984 10 GFAEEYIIESIWNNRFPPGSILPAERELSEL 40 (239)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHH
Confidence 46889999999999999998 7999999875
No 84
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=23.90 E-value=62 Score=27.51 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=42.8
Q ss_pred chhhhHHHHHhhhh--HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhccccccccc
Q 013544 282 NQLEIDHLKFMLHQ--KEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISD 334 (441)
Q Consensus 282 n~~e~~~l~~m~~q--~ele~~r~k~q~e~~K~~lsvlq~K~~~~i~~A~~Ll~e 334 (441)
=+-+-+++..|-.. .+-++.+.++-+++|+.++--.+.+...++.+-+.+|.+
T Consensus 23 ~~~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~ 77 (90)
T PF02970_consen 23 VEEQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEE 77 (90)
T ss_dssp HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777766 788889999999999999999999999988888777653
No 85
>PRK09764 DNA-binding transcriptional repressor MngR; Provisional
Probab=23.81 E-value=97 Score=29.48 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 013544 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (441)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~~-vps~kel~~h 91 (441)
..+.++|++-+..=.++||. +||-+||++.
T Consensus 8 ~qi~~~L~~~I~~g~~~~G~~LPsE~eL~~~ 38 (240)
T PRK09764 8 RQIADRIREQIARGELKPGDALPTESALQTE 38 (240)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHH
Confidence 57889999999999999996 9999999976
No 86
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.69 E-value=70 Score=32.93 Aligned_cols=30 Identities=37% Similarity=0.398 Sum_probs=22.7
Q ss_pred hhhhHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 013544 283 QLEIDHLKFMLHQKEMELSRLKEQIEKEKL 312 (441)
Q Consensus 283 ~~e~~~l~~m~~q~ele~~r~k~q~e~~K~ 312 (441)
..||++|+-||||+..++..--.||-+-|+
T Consensus 231 keeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 231 KEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 468999999999999887765555544443
No 87
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=23.18 E-value=55 Score=25.10 Aligned_cols=16 Identities=19% Similarity=0.384 Sum_probs=13.0
Q ss_pred cCCCCCCCCChHHHHH
Q 013544 75 VGLSESHVPSMKELSA 90 (441)
Q Consensus 75 ~~lp~~~vps~kel~~ 90 (441)
.+||++|+|+.|-+-.
T Consensus 34 mELP~Yr~P~~~~vl~ 49 (54)
T PF07664_consen 34 MELPPYRMPRLKNVLR 49 (54)
T ss_pred EeCCCCCCCCHHHHHH
Confidence 5799999999886543
No 88
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.94 E-value=69 Score=35.95 Aligned_cols=27 Identities=22% Similarity=0.591 Sum_probs=22.7
Q ss_pred cCCeeEEEEEEECCeeec---CCCCCcccC
Q 013544 404 LYPGTYEIKFIVDGQWKV---DPQRESVTK 430 (441)
Q Consensus 404 LpPGrYEYKFIVDGeW~~---DPd~PtVtD 430 (441)
-+.|.|+|||-++|+|+. |+..|+..+
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 467999999999999964 888888764
No 89
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=22.78 E-value=1.5e+02 Score=32.38 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHH---HHhhhhhhhhhhhhhhcccccccccchH-----HHHHHHHhcCCceEEEEEEecCCceEEE
Q 013544 294 HQKEMELSRLKEQIEK---EKLALSVLQTKAVTEINKAEKLISDKDE-----ELIAAEESLSGLEVVEIQYSGDGEIVEV 365 (441)
Q Consensus 294 ~q~ele~~r~k~q~e~---~K~~lsvlq~K~~~~i~~A~~Ll~eKd~-----~LdaAe~aLsgL~~VTFtW~~~AksVeV 365 (441)
|+.--|+..+++.|.. .|+.+.+-.++...++...++.+.-|-+ .+.-......+.+|+.+.-...-.++.+
T Consensus 112 ~~gp~eL~~AR~~ia~ySl~Ra~~Rl~k~re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~ds~~la 191 (459)
T KOG0272|consen 112 HEGPVELRVARLWIANYSLERAKLRLQKARERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRDSKHLA 191 (459)
T ss_pred ccCCHHHHHHHHHHHhccHHHHHHHHHHHHHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecCCCeEE
Confidence 3333344444443332 2344444555555667666666655444 3333445577889999998888889999
Q ss_pred EeeeCC
Q 013544 366 AGSFNG 371 (441)
Q Consensus 366 aGSFNn 371 (441)
+|||.|
T Consensus 192 T~swsG 197 (459)
T KOG0272|consen 192 TGSWSG 197 (459)
T ss_pred EeecCC
Confidence 999986
No 90
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=22.62 E-value=1.3e+02 Score=25.66 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=24.9
Q ss_pred CCCcEEEEEEcCCeeEEEEEEECCeeecCCCCCc
Q 013544 394 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 427 (441)
Q Consensus 394 esG~FsttL~LpPGrYEYKFIVDGeW~~DPd~Pt 427 (441)
..|.=++.+.|+||+|...-+. |.+.+-|..|.
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 3556667899999999999887 66666666654
No 91
>PRK10785 maltodextrin glucosidase; Provisional
Probab=22.60 E-value=2.9e+02 Score=30.58 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=33.9
Q ss_pred CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEcC--CeeEEEEEEE--CCe
Q 013544 360 GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PGTYEIKFIV--DGQ 418 (441)
Q Consensus 360 AksVeVaGSFNnW~~~IpM~kd~ss~~~~~~~tkesG~FsttL~Lp--PGrYEYKFIV--DGe 418 (441)
...|.|.=.+++-...++|.+... +.....|.+++.++ ++++.|.|.| +|+
T Consensus 33 ~~~v~l~~~~~~~~~~~~m~~~~~--------~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 33 PQRVMLRCEPDNEEYLLPMEKQRS--------QPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred eEEEEEEEEcCCCEEEEEeEEeec--------CCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 468888655555555578887521 11224699999885 7888888888 554
No 92
>PRK11402 DNA-binding transcriptional regulator FrlR; Provisional
Probab=21.99 E-value=1.1e+02 Score=29.00 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCChHHHHHh
Q 013544 62 EELYNDLREFLSTVGLSESH-VPSMKELSAH 91 (441)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~~-vps~kel~~h 91 (441)
+.+.++|++-+-.=.+|+|. +||-+||++.
T Consensus 12 ~qI~~~i~~~I~~G~~~~g~kLPsE~eLa~~ 42 (241)
T PRK11402 12 ATVRQRLLDDIAQGVYQAGQQIPTENELCTQ 42 (241)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHH
Confidence 67889999999999999987 9999999875
No 93
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=21.63 E-value=1e+02 Score=24.70 Aligned_cols=26 Identities=23% Similarity=0.603 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCChHHHHHh
Q 013544 62 EELYNDLREFLSTVGLSESHVPSMKELSAH 91 (441)
Q Consensus 62 ~~l~~d~~ef~s~~~lp~~~vps~kel~~h 91 (441)
.+++.=|++|+..-|.| ||.+|+++|
T Consensus 9 ~~vL~~I~~~~~~~G~~----Pt~rEIa~~ 34 (65)
T PF01726_consen 9 KEVLEFIREYIEENGYP----PTVREIAEA 34 (65)
T ss_dssp HHHHHHHHHHHHHHSS-------HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC----CCHHHHHHH
Confidence 46788889999998888 799999876
No 94
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=20.59 E-value=54 Score=31.77 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=18.1
Q ss_pred HHHHhc-CCCCCCCCChHHHHHhchh
Q 013544 70 EFLSTV-GLSESHVPSMKELSAHGRD 94 (441)
Q Consensus 70 ef~s~~-~lp~~~vps~kel~~hgr~ 94 (441)
||.+-. -|=|--.|-||||+++|+.
T Consensus 66 elrk~g~rlLPl~~pgMr~Ls~Rg~~ 91 (178)
T COG2410 66 ELRKYGARLLPLTFPGMRELSRRGMS 91 (178)
T ss_pred HHHHcCCccCCCCchhHHHHHHHHHH
Confidence 444443 4556678999999999875
No 95
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=20.57 E-value=1.1e+02 Score=26.19 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=13.9
Q ss_pred hhhhhcccccccccchHHHHHHH
Q 013544 321 AVTEINKAEKLISDKDEELIAAE 343 (441)
Q Consensus 321 ~~~~i~~A~~Ll~eKd~~LdaAe 343 (441)
.+.+|.+||.++.+-+.-.+.++
T Consensus 65 ~~a~If~ah~~~L~D~~l~~~v~ 87 (123)
T PF05524_consen 65 EEAAIFEAHLMMLEDPELIDEVE 87 (123)
T ss_dssp SCTHHHHHHHHHHT-HHHHHHHH
T ss_pred cHHHHHHHHHHHhcCHhHHHHHH
Confidence 34478888888887555444443
No 96
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=20.30 E-value=3.3e+02 Score=21.95 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=56.9
Q ss_pred CCCceeeEEEeeecCCCCCCCCCCCCCCcccccccCcHHHHHHHHHHHHhcCCCCCCCCChHHHHH--hchhhHHHHHHh
Q 013544 25 PRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSA--HGRDDLANIVRR 102 (441)
Q Consensus 25 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~r~~~~~k~~~~l~~d~~ef~s~~~lp~~~vps~kel~~--hgr~dlan~vrr 102 (441)
..+|--++|.+-.... .......|||+.=.+|...|++-.....||+ +|..+-+.. ....+...--|+
T Consensus 9 ~~~~~~~~~~v~~~~~--------~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~--lP~k~~~~~~~~~~~~~i~~R~~ 78 (105)
T smart00312 9 DGKHYYYVIEIETKTG--------LEEWTVSRRYSDFLELHSKLKKHFPRRILPP--LPPKKLFGRLNNFSEEFIEKRRR 78 (105)
T ss_pred CCceEEEEEEEEECCC--------CceEEEEEEHHHHHHHHHHHHHHCcCCCCCC--CCCchhcccCCcCCHHHHHHHHH
Confidence 3566677777766541 1456788999999999999998776666775 565543321 233455555555
Q ss_pred hhHHHHHHHHhCCCCCC
Q 013544 103 RGYKFIRQLLKSSTKPG 119 (441)
Q Consensus 103 rg~k~i~~llsn~~~~~ 119 (441)
.=..++++|++++....
T Consensus 79 ~L~~yL~~l~~~~~~~~ 95 (105)
T smart00312 79 GLERYLQSLLNHPELIN 95 (105)
T ss_pred HHHHHHHHHHcCHhhhc
Confidence 56789999999886433
No 97
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=20.27 E-value=71 Score=26.21 Aligned_cols=16 Identities=38% Similarity=0.825 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHhcC
Q 013544 61 NEELYNDLREFLSTVG 76 (441)
Q Consensus 61 ~~~l~~d~~ef~s~~~ 76 (441)
.+++..|||+|.|..|
T Consensus 4 re~i~~~iR~~fs~lG 19 (62)
T PF15513_consen 4 REEITAEIRQFFSQLG 19 (62)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4678888888888776
Done!