BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013545
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 204/424 (48%), Gaps = 63/424 (14%)
Query: 1 MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
M + R+ G P + R+ L+L+ +++ H G IN+L ++ E RY+L
Sbjct: 1 MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML 60
Query: 61 SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
SG SD + +YD++ ++ ++V + + H H+Y++ + WYP DTG+F
Sbjct: 61 SGGSDGVIVLYDLENSSRQS----YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116
Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
+ S+D +KVWDTN + F VY MSP++ H L+A GT +V+LCD+ SG
Sbjct: 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176
Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRR 239
+ S L GHR I+ V WS ++IL T D ++ WD+RRA GC LDQ +
Sbjct: 177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK---- 232
Query: 240 PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDR 299
K +A + + NG
Sbjct: 233 -----------------KSQAVESANTAHNG----------------------------- 246
Query: 300 ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359
V GL T DG++LL+ G+D+R+RLW+ +G NTLVN+ V + K ++ +
Sbjct: 247 ------KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS 300
Query: 360 --QDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV 417
VFVP + + + ++SG+ +GHY+ V+CC F S QELY+G D IL
Sbjct: 301 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360
Query: 418 WCPS 421
W PS
Sbjct: 361 WVPS 364
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 39/236 (16%)
Query: 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVD 95
K I++ H GS+ LQ D ER +++G+SDS+V V+DV E + H
Sbjct: 166 KRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTG---EMLNTLIHH------- 212
Query: 96 KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWD-TNCTRVVMNFKMPGKVYRTAMS 154
+ + + G+ VT S D + VWD + T + + + G +R A++
Sbjct: 213 ----------CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG--HRAAVN 260
Query: 155 PLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA 214
+ I + + D +++ + ++ +TL+GH+ GI +++ ++V+G D
Sbjct: 261 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR---LVVSGSSDNT 317
Query: 215 IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK---------PRAP 261
IR WDI C RVL + +L R ++ +S + +K PRAP
Sbjct: 318 IRLWDIECGACLRVL-EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 372
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 94/258 (36%), Gaps = 44/258 (17%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
I +G D +++ D + + L+GH ++ +++ E +++TG D +R WD+
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNT 202
Query: 223 AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282
L + L N+ + + RS
Sbjct: 203 GEMLNTLIHHCEAV-----------LHLRFNNGMMVTCSKDRSI---------------- 235
Query: 283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN 342
+V P ++ + H AV V D Y++SA D I++W+ +
Sbjct: 236 -AVWDMASPTDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTC------ 286
Query: 343 FETVRLQTSKPIQLATTQ--DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS 400
E VR +A Q D VV ++ +DI G GH E V C F
Sbjct: 287 -EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF- 344
Query: 401 SQDQELYTGGNDRQILVW 418
++ + +G D +I VW
Sbjct: 345 -DNKRIVSGAYDGKIKVW 361
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 45/226 (19%)
Query: 115 DTGLFVTGSYDHYVKVWDTN---CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D V+G D+ +K+WD N C R++ + ++ L +I G+ D
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTG-------HTGSVLCLQYDERVIITGSSDST 194
Query: 172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231
VR+ D+ +G + TL H + ++ + ++ ++VT D +I WD+
Sbjct: 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDM----------- 240
Query: 232 SQSQLGRRPPLLKRKSLSAGQNSSVK-PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH 290
P + + + G ++V K + +G R V VR
Sbjct: 241 ------ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT--- 291
Query: 291 PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336
H + L+ + ++S SD+ IRLWD+E G
Sbjct: 292 ---------LNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECG 326
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 17/189 (8%)
Query: 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
+LLS + D +V ++D+ G I +++F GH + W+ +
Sbjct: 194 HLLSASDDHTVCLWDINAGP---KEGKIVDAKAIFT-------GHSAVVEDVAWHLLHES 243
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
LF + + D + +WDT N T + +S S ++A G+ D V L
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
D+ + + T H+D I V WS +E IL + G D + WD+ + G +QS
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG----EEQSAE 359
Query: 235 QLGRRPPLL 243
PP L
Sbjct: 360 DAEDGPPEL 368
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVY--RTAMSPLAA 158
GH+ W +G ++ S DH V +WD N ++ +A+ A
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 159 SHM----LIAAGTEDVQVRLCDIASGAISQT---LSGHRDGIMTVEWSTSSEWILVTGGC 211
H+ L + +D ++ + D S S+ + H + + ++ SE+IL TG
Sbjct: 237 WHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 212 DGAIRFWDIRR 222
D + WD+R
Sbjct: 297 DKTVALWDLRN 307
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/204 (18%), Positives = 77/204 (37%), Gaps = 32/204 (15%)
Query: 31 QLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRS 90
++ + K I + H + + L E S A D + ++D + T +
Sbjct: 217 KIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNT---------TSKP 267
Query: 91 VFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK--V 148
+VD H ++ + P + TGS D V +WD ++ ++ K +
Sbjct: 268 SHLVD-----AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEI 322
Query: 149 YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG--------------IM 194
++ SP + +L ++GT D ++ + D++ Q+ DG I
Sbjct: 323 FQVHWSPHNET-ILASSGT-DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 380
Query: 195 TVEWSTSSEWILVTGGCDGAIRFW 218
W+ + W++ + D + W
Sbjct: 381 DFSWNPNEPWVICSVSEDNIXQIW 404
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 318 YLLSAGSDSRIRLWDVESG--RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKA 375
+LLSA D + LWD+ +G +V+ + + S ++ + +
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 376 FDIWSGKTCLTFR------GHYEYVNCCCFSSQDQE-LYTGGNDRQILVW 418
IW ++ T + H VNC F+ + L TG D+ + +W
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 17/189 (8%)
Query: 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
+LLS + D +V ++D+ G I +++F GH + W+ +
Sbjct: 194 HLLSASDDHTVCLWDINAGP---KEGKIVDAKAIFT-------GHSAVVEDVAWHLLHES 243
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
LF + + D + +WDT N T + +S S ++A G+ D V L
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
D+ + + T H+D I V WS +E IL + G D + WD+ + G +QS
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG----EEQSAE 359
Query: 235 QLGRRPPLL 243
PP L
Sbjct: 360 DAEDGPPEL 368
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVY--RTAMSPLAA 158
GH+ W +G ++ S DH V +WD N ++ +A+ A
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 159 SHM----LIAAGTEDVQVRLCDIASGAISQT---LSGHRDGIMTVEWSTSSEWILVTGGC 211
H+ L + +D ++ + D S S+ + H + + ++ SE+IL TG
Sbjct: 237 WHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 212 DGAIRFWDIRR 222
D + WD+R
Sbjct: 297 DKTVALWDLRN 307
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/206 (17%), Positives = 79/206 (38%), Gaps = 32/206 (15%)
Query: 31 QLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRS 90
++ + K I + H + + L E S A D + ++D + T +
Sbjct: 217 KIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNT---------TSKP 267
Query: 91 VFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK--V 148
+VD H ++ + P + TGS D V +WD ++ ++ K +
Sbjct: 268 SHLVD-----AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEI 322
Query: 149 YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG--------------IM 194
++ SP + +L ++GT D ++ + D++ Q+ DG I
Sbjct: 323 FQVHWSPHNET-ILASSGT-DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 380
Query: 195 TVEWSTSSEWILVTGGCDGAIRFWDI 220
W+ + W++ + D ++ W +
Sbjct: 381 DFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
YLLS + D ++ ++D+ AT E + +++F GH + W+ +
Sbjct: 196 YLLSASDDHTICLWDI-NATPKEH--RVIDAKNIFT-------GHTAVVEDVAWHLLHES 245
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
LF + + D + +WDT N T + +S S ++A G+ D V L
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
D+ + + + H+D I V+WS +E IL + G D + WD+ + G +QS
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----EEQSTE 361
Query: 235 QLGRRPPLL 243
PP L
Sbjct: 362 DAEDGPPEL 370
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVY--RTAMSPLAA 158
GH+ W P G ++ S DH + +WD N T ++ TA+ A
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 159 SHM----LIAAGTEDVQVRLCDIASGAISQ---TLSGHRDGIMTVEWSTSSEWILVTGGC 211
H+ L + +D ++ + D + S+ T+ H + + ++ SE+IL TG
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 298
Query: 212 DGAIRFWDIRR 222
D + WD+R
Sbjct: 299 DKTVALWDLRN 309
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 32/201 (15%)
Query: 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVD 95
K I + H + + L E S A D + ++D R + H VD
Sbjct: 224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT-RNNNTSKPSH--------TVD 274
Query: 96 KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDT-NCTRVVMNFK-MPGKVYRTAM 153
H ++ + P + TGS D V +WD N + +F+ ++++
Sbjct: 275 -----AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 329
Query: 154 SPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG--------------IMTVEWS 199
SP + +L ++GT D ++ + D++ Q+ DG I W+
Sbjct: 330 SPHNET-ILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 387
Query: 200 TSSEWILVTGGCDGAIRFWDI 220
+ WI+ + D ++ W +
Sbjct: 388 PNEPWIICSVSEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
YLLS + D ++ ++D+ AT E + +++F GH + W+ +
Sbjct: 198 YLLSASDDHTICLWDI-NATPKEH--RVIDAKNIFT-------GHTAVVEDVAWHLLHES 247
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
LF + + D + +WDT N T + +S S ++A G+ D V L
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
D+ + + + H+D I V+WS +E IL + G D + WD+ + G +QS
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----EEQSTE 363
Query: 235 QLGRRPPLL 243
PP L
Sbjct: 364 DAEDGPPEL 372
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVY--RTAMSPLAA 158
GH+ W P G ++ S DH + +WD N T ++ TA+ A
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 159 SHM----LIAAGTEDVQVRLCDIASGAISQ---TLSGHRDGIMTVEWSTSSEWILVTGGC 211
H+ L + +D ++ + D + S+ T+ H + + ++ SE+IL TG
Sbjct: 241 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 300
Query: 212 DGAIRFWDIRR 222
D + WD+R
Sbjct: 301 DKTVALWDLRN 311
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 32/201 (15%)
Query: 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVD 95
K I + H + + L E S A D + ++D R + H VD
Sbjct: 226 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT-RNNNTSKPSH--------TVD 276
Query: 96 KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDT-NCTRVVMNFK-MPGKVYRTAM 153
H ++ + P + TGS D V +WD N + +F+ ++++
Sbjct: 277 -----AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 331
Query: 154 SPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG--------------IMTVEWS 199
SP + +L ++GT D ++ + D++ Q+ DG I W+
Sbjct: 332 SPHNET-ILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 389
Query: 200 TSSEWILVTGGCDGAIRFWDI 220
+ WI+ + D ++ W +
Sbjct: 390 PNEPWIICSVSEDNIMQVWQM 410
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 85 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 142
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 143 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 199
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 200 TASGQCLKTL 209
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 361
H AV+ +K + +G +L S+ +D I++W G+ FE T+ +A + D
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 98
Query: 362 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
+V +K +D+ SGK T +GH YV CC F+ Q + +G D + +W
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C K+L N
Sbjct: 97 SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 136
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ + +G SV K + P AH V+ + DG +
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 186
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 187 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 237
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 238 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 140 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 181
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 237
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 238 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 289
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
YLLS + D ++ ++D+ AT E + +++F GH + W+ +
Sbjct: 200 YLLSASDDHTICLWDI-NATPKEH--RVIDAKNIFT-------GHTAVVEDVAWHLLHES 249
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
LF + + D + +WDT N T + +S S ++A G+ D V L
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
D+ + + + H+D I V+WS +E IL + G D + WD+ + G +QS
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----EEQSTE 365
Query: 235 QLGRRPPLL 243
PP L
Sbjct: 366 DAEDGPPEL 374
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVY--RTAMSPLAA 158
GH+ W P G ++ S DH + +WD N T ++ TA+ A
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 159 SHM----LIAAGTEDVQVRLCDIASGAISQ---TLSGHRDGIMTVEWSTSSEWILVTGGC 211
H+ L + +D ++ + D + S+ T+ H + + ++ SE+IL TG
Sbjct: 243 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 302
Query: 212 DGAIRFWDIRR 222
D + WD+R
Sbjct: 303 DKTVALWDLRN 313
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 32/201 (15%)
Query: 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVD 95
K I + H + + L E S A D + ++D R + H VD
Sbjct: 228 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT-RNNNTSKPSH--------TVD 278
Query: 96 KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDT-NCTRVVMNFK-MPGKVYRTAM 153
H ++ + P + TGS D V +WD N + +F+ ++++
Sbjct: 279 -----AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 333
Query: 154 SPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG--------------IMTVEWS 199
SP + +L ++GT D ++ + D++ Q+ DG I W+
Sbjct: 334 SPHNET-ILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 391
Query: 200 TSSEWILVTGGCDGAIRFWDI 220
+ WI+ + D ++ W +
Sbjct: 392 PNEPWIICSVSEDNIMQVWQM 412
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 87 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 144
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 145 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 201
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 202 TASGQCLKTL 211
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 361
H AV+ +K + +G +L S+ +D I++W G+ FE T+ +A + D
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 100
Query: 362 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
+V +K +D+ SGK T +GH YV CC F+ Q + +G D + +W
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 98
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C K+L N
Sbjct: 99 SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 138
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ + +G SV K + P AH V+ + DG +
Sbjct: 139 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 188
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 189 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 239
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 240 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 288
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 142 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 183
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 239
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 240 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 291
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 80 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 137
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 138 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 194
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 195 TASGQCLKTL 204
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 91
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C K+L N
Sbjct: 92 SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 131
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ + +G SV K + P AH V+ + DG +
Sbjct: 132 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 181
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 182 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 232
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 233 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 135 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 176
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 232
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 233 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 284
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 69 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 126
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 127 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 183
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 184 TASGQCLKTL 193
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 106/289 (36%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C + L + + N
Sbjct: 81 SDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-----------FCCNFN------ 122
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
PQ +S G + L AH V+ + DG +
Sbjct: 123 -PQSNLIVSGSFDESVRIWDVKTGKCLKTL-----------PAHSDPVSAVHFNRDGSLI 170
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 221
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 124 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 165
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 221
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 273
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 63 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 120
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 121 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 177
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 178 TASGQCLKTL 187
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C K+L N
Sbjct: 75 SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 114
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ + +G SV K + P AH V+ + DG +
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 164
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 215
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 118 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 159
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 215
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 267
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 69 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 126
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 127 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 183
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 184 TASGQCLKTL 193
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 106/289 (36%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C + L + + N
Sbjct: 81 SDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-----------FCCNFN------ 122
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
PQ +S G + L AH V+ + DG +
Sbjct: 123 -PQSNLIVSGSFDESVRIWDVKTGKCLKTL-----------PAHSDPVSAVHFNRDGSLI 170
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 221
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 124 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 165
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 221
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 273
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 66 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 181 TASGQCLKTL 190
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C K+L N
Sbjct: 78 SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 117
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ + +G SV K + P AH V+ + DG +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 167
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 218
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 121 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 162
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 218
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 270
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 63 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 120
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 121 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 177
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 178 TASGQCLKTL 187
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C K+L N
Sbjct: 75 SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 114
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ + +G SV K + P AH V+ + DG +
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 164
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 215
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 118 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 159
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 215
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 267
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 69 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 126
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 127 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 183
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 184 TASGQCLKTL 193
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 109/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C + L + + + P+
Sbjct: 81 SDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC---------------CNFNPQ 124
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ S G SV K + P AH V+ + DG +
Sbjct: 125 SNLIVS----GSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 170
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 221
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 124 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 165
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 221
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 273
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 64 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 121
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 122 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 178
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 179 TASGQCLKTL 188
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 75
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C K+L N
Sbjct: 76 SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 115
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ + +G SV K + P AH V+ + DG +
Sbjct: 116 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 165
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 166 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 216
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 217 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 119 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 160
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 216
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 217 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 268
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 68 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 125
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 126 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 182
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 183 TASGQCLKTL 192
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 79
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C K+L N
Sbjct: 80 SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 119
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ + +G SV K + P AH V+ + DG +
Sbjct: 120 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 169
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 170 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 220
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 221 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 123 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 164
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 220
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 221 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 272
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 66 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 181 TASGQCLKTL 190
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C K+L N
Sbjct: 78 SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 117
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ + +G SV K + P AH V+ + DG +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 167
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 218
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 121 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 162
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 218
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 270
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 59 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 116
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 117 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 173
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 174 TASGQCLKTL 183
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 70
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C K+L N
Sbjct: 71 SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 110
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ + +G SV K + P AH V+ + DG +
Sbjct: 111 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 160
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 161 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 211
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 212 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 114 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 155
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 211
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 212 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 263
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 66 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 181 TASGQCLKTL 190
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 108/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C K+L N
Sbjct: 78 SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 117
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ + +G SV K + + P AH V+ + DG +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP----------AHSDPVSAVHFNRDGSLI 167
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 218
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 66 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 181 TASGQCLKTL 190
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +AA + D +++ G +T+SGH+ GI V WS
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C K+L N
Sbjct: 78 SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 117
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ + +G SV K + P AH V+ + DG +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 167
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 218
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 121 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 162
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 218
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 270
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 62 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 119
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 120 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 176
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 177 TASGQCLKTL 186
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 73
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C K+L N
Sbjct: 74 SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 113
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ + +G SV K + P AH V+ + DG +
Sbjct: 114 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNRDGSLI 163
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 164 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NT 214
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 215 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114
+ ++SG+ D SV ++DV+ G K H + SA+ +
Sbjct: 117 QSNLIVSGSFDESVRIWDVKT-------GKCLKTLP----------AHSDPV-SAVHFNR 158
Query: 115 DTGLFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D L V+ SYD ++WDT C + +++ P V SP + I A T D
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSP---NGKYILAATLDNT 214
Query: 172 VRLCDIASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
++L D + G +T +GH++ I T +WI V+G D + W+++
Sbjct: 215 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI-VSGSEDNLVYIWNLQ 266
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
GHK IS W D+ L V+ S D +K+WD + + + K V+ +P +
Sbjct: 66 GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
LI +G+ D VR+ D+ +G +TL H D + V ++ ++V+ DG R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
C + L
Sbjct: 181 TASGQCLKTL 190
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 108/289 (37%), Gaps = 49/289 (16%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ F + G + + + +A+ + D +++ G +T+SGH+ GI V WS
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259
+ S +LV+ D ++ WD+ C K+L N
Sbjct: 78 SDSN-LLVSASDDKTLKIWDVSSGKCL-------------------KTLKGHSNYVFCCN 117
Query: 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319
+ + +G SV K + + P AH V+ + DG +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP----------AHSDPVSAVHFNRDGSLI 167
Query: 320 LSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFVPCMTA 372
+S+ D R+WD SG+ TL++ + V+ + LA T D
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------ND 218
Query: 373 VKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 418
+K +D GK T+ GH C FS + + + +G D + +W
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 17/189 (8%)
Query: 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
+LLS + D ++ ++D+ G + +++F GH + W+ +
Sbjct: 192 HLLSASDDHTICLWDISAVP---KEGKVVDAKTIFT-------GHTAVVEDVSWHLLHES 241
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
LF + + D + +WDT N T + +S S ++A G+ D V L
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
D+ + + + H+D I V+WS +E IL + G D + WD+ + G +QS
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG----EEQSPE 357
Query: 235 QLGRRPPLL 243
PP L
Sbjct: 358 DAEDGPPEL 366
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVY--RTAMSPLAA 158
GH+ W P +G ++ S DH + +WD + ++ TA+ +
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 159 SHM----LIAAGTEDVQVRLCDIASGAISQ---TLSGHRDGIMTVEWSTSSEWILVTGGC 211
H+ L + +D ++ + D S S+ ++ H + + ++ SE+IL TG
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 294
Query: 212 DGAIRFWDIRR 222
D + WD+R
Sbjct: 295 DKTVALWDLRN 305
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 32/201 (15%)
Query: 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVD 95
K I + H + + L E S A D + ++D R+ + H VD
Sbjct: 220 KTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDT-RSNNTSKPSH--------SVD 270
Query: 96 KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDT-NCTRVVMNFK-MPGKVYRTAM 153
H ++ + P + TGS D V +WD N + +F+ ++++
Sbjct: 271 -----AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 325
Query: 154 SPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG--------------IMTVEWS 199
SP + ++A+ D ++ + D++ Q+ DG I W+
Sbjct: 326 SP--HNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWN 383
Query: 200 TSSEWILVTGGCDGAIRFWDI 220
+ W++ + D ++ W +
Sbjct: 384 PNEPWVICSVSEDNIMQVWQM 404
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 98/257 (38%), Gaps = 56/257 (21%)
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
+A G ED +R+ DI + I L GH I ++++ S + LV+G D +R WD+R
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLR 195
Query: 222 RAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281
C L S+ G + K A G+ R V
Sbjct: 196 TGQCSLTL-----------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD-SE 237
Query: 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV 341
G + +RL S + T H +V + T DG ++S D ++LW++++ N
Sbjct: 238 TGFLVERLD----SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK-- 291
Query: 342 NFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 401
+ ++ P SG +T+ GH ++V +
Sbjct: 292 ---------------SDSKTPN----------------SGTCEVTYIGHKDFVLSVATTQ 320
Query: 402 QDQELYTGGNDRQILVW 418
D+ + +G DR +L W
Sbjct: 321 NDEYILSGSKDRGVLFW 337
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 90/235 (38%), Gaps = 17/235 (7%)
Query: 109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGT 167
++ + D TG+ D +++WD ++VM + +Y P S + +G+
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP---SGDKLVSGS 184
Query: 168 EDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR 227
D VR+ D+ +G S TLS DG+ TV S + G D A+R WD
Sbjct: 185 GDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 243
Query: 228 VLD-QSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVR 286
LD +++S G + + GQ+ + N S + P G+
Sbjct: 244 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303
Query: 287 QRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV 341
H V + T++ Y+LS D + WD +SG L+
Sbjct: 304 VTY-----------IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 299 RATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT 358
++ H V +K + DG YL + G + +++ V G + + P L T
Sbjct: 59 KSLDHTSVVCCVKFSNDGEYL-ATGCNKTTQVYRVSDG-SLVARLSDDSAANKDPENLNT 116
Query: 359 TQDPA-------VVFVPCMT---------AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ 402
+ P+ V F P ++ +DI + K + +GH + + +
Sbjct: 117 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 176
Query: 403 DQELYTGGNDRQILVW 418
+L +G DR + +W
Sbjct: 177 GDKLVSGSGDRTVRIW 192
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
+ D T S D VK+WD+ ++V + + ++H+L+A G+ D
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224
++L D+ T+ GH + + +S E +L + DG +R WD+R A
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSAN 783
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 25/191 (13%)
Query: 236 LGRRP-PLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ--SSVGRIPAKGSVRQRLHPG 292
LGR+P P + + L + S V +A + G+ R + + K R + P
Sbjct: 562 LGRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRP- 620
Query: 293 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352
H AV ++DG + S G+D ++++ E+G L ++ +
Sbjct: 621 ----------HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL----DIKAHEDE 666
Query: 353 PIQLATTQDPAVVFVPCMTAVKAFDIW---SGKTCLTFRGHYEYVNCCCFSSQDQELY-- 407
+ A + D + ++ +A K IW +GK T+ H E VNCC F+++ L
Sbjct: 667 VLCCAFSSDDS--YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 724
Query: 408 TGGNDRQILVW 418
TG ND + +W
Sbjct: 725 TGSNDFFLKLW 735
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 101/259 (38%), Gaps = 24/259 (9%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST-SSEWILVTGGCDGAIRFWDIR 221
IA + D +V++ D A+G + T H + + ++ S+ +L TG D ++ WD+
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 222 RAGCFRVLDQSQSQLG--RRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI 279
+ C + + + R P L A ++ R RSAN + +V R
Sbjct: 739 QKECRNTMFGHTNSVNHCRFSP---DDELLASCSADGTLRLWDVRSANER--KSINVKRF 793
Query: 280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT 339
LSS+D V + DG ++ A + ++ L+D+ +
Sbjct: 794 -------------FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTS-GL 838
Query: 340 LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF 399
L T T + + AV+ + V+ ++I S RGH +V+ F
Sbjct: 839 LAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDSRLKVADCRGHLSWVHGVMF 897
Query: 400 SSQDQELYTGGNDRQILVW 418
S T +D+ I VW
Sbjct: 898 SPDGSSFLTASDDQTIRVW 916
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362
H AV ++ T DG L+S+ DS I++W+ ++G F +T K +L QD
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV---FLQAHQETVKDFRL--LQDS 1063
Query: 363 AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
++ VK +++ +G+ F H V C SS + + D+ +W
Sbjct: 1064 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 32/139 (23%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362
H V G+ + DG L+A D IR+W+ + + K + Q+
Sbjct: 888 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETK--------------KVCKNSAIVLKQEI 933
Query: 363 AVVFVPCMTAVKAFD------IWSGKTCLTFRGHYEY-----VNCCCFSSQDQELYTGGN 411
VVF T V A D + +GKT G +Y V+CCC S + + G
Sbjct: 934 DVVFQENETMVLAVDNIRGLQLIAGKT-----GQIDYLPEAQVSCCCLSPHLEYVAFGDE 988
Query: 412 DRQI-LVWCP-SRHISDGV 428
D I ++ P +R S GV
Sbjct: 989 DGAIKIIELPNNRVFSSGV 1007
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 19/126 (15%)
Query: 302 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF-----ETVRL----QTSK 352
AH V + D Y+ + +D ++++WD +G+ LV+ E V S
Sbjct: 662 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK--LVHTYDEHSEQVNCCHFTNKSN 719
Query: 353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412
+ LAT + +K +D+ + T GH VN C FS D+ L + D
Sbjct: 720 HLLLATGSNDFF--------LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 771
Query: 413 RQILVW 418
+ +W
Sbjct: 772 GTLRLW 777
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
+ D T S D VK+WD+ ++V + + ++H+L+A G+ D
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224
++L D+ T+ GH + + +S E +L + DG +R WD+R A
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSAN 776
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 25/191 (13%)
Query: 236 LGRRP-PLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ--SSVGRIPAKGSVRQRLHPG 292
LGR+P P + + L + S V +A + G+ R + + K R + P
Sbjct: 555 LGRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRP- 613
Query: 293 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352
H AV ++DG + S G+D ++++ E+G L ++ +
Sbjct: 614 ----------HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL----DIKAHEDE 659
Query: 353 PIQLATTQDPAVVFVPCMTAVKAFDIW---SGKTCLTFRGHYEYVNCCCFSSQDQELY-- 407
+ A + D + ++ +A K IW +GK T+ H E VNCC F+++ L
Sbjct: 660 VLCCAFSSDDS--YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 717
Query: 408 TGGNDRQILVW 418
TG ND + +W
Sbjct: 718 TGSNDFFLKLW 728
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 101/259 (38%), Gaps = 24/259 (9%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST-SSEWILVTGGCDGAIRFWDIR 221
IA + D +V++ D A+G + T H + + ++ S+ +L TG D ++ WD+
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 222 RAGCFRVLDQSQSQLG--RRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI 279
+ C + + + R P L A ++ R RSAN + +V R
Sbjct: 732 QKECRNTMFGHTNSVNHCRFSP---DDELLASCSADGTLRLWDVRSANER--KSINVKRF 786
Query: 280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT 339
LSS+D V + DG ++ A + ++ L+D+ +
Sbjct: 787 -------------FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTS-GL 831
Query: 340 LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF 399
L T T + + AV+ + V+ ++I S RGH +V+ F
Sbjct: 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDSRLKVADCRGHLSWVHGVMF 890
Query: 400 SSQDQELYTGGNDRQILVW 418
S T +D+ I VW
Sbjct: 891 SPDGSSFLTASDDQTIRVW 909
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362
H AV ++ T DG L+S+ DS I++W+ ++G F +T K +L QD
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV---FLQAHQETVKDFRL--LQDS 1056
Query: 363 AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
++ VK +++ +G+ F H V C SS + + D+ +W
Sbjct: 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 32/139 (23%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362
H V G+ + DG L+A D IR+W+ + + K + Q+
Sbjct: 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETK--------------KVCKNSAIVLKQEI 926
Query: 363 AVVFVPCMTAVKAFD------IWSGKTCLTFRGHYEY-----VNCCCFSSQDQELYTGGN 411
VVF T V A D + +GKT G +Y V+CCC S + + G
Sbjct: 927 DVVFQENETMVLAVDNIRGLQLIAGKT-----GQIDYLPEAQVSCCCLSPHLEYVAFGDE 981
Query: 412 DRQI-LVWCP-SRHISDGV 428
D I ++ P +R S GV
Sbjct: 982 DGAIKIIELPNNRVFSSGV 1000
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 19/126 (15%)
Query: 302 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF-----ETVRL----QTSK 352
AH V + D Y+ + +D ++++WD +G+ LV+ E V S
Sbjct: 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK--LVHTYDEHSEQVNCCHFTNKSN 712
Query: 353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412
+ LAT + +K +D+ + T GH VN C FS D+ L + D
Sbjct: 713 HLLLATGSNDFF--------LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764
Query: 413 RQILVW 418
+ +W
Sbjct: 765 GTLRLW 770
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 136/328 (41%), Gaps = 29/328 (8%)
Query: 107 SSAIW---YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLI 163
SS++W + D + S D VK+W+ N + V+ A SP + I
Sbjct: 139 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT---I 195
Query: 164 AAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223
A+ ++D V+L + +G + QTL+GH + V +S + + + D ++ W+ R
Sbjct: 196 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWN-RNG 252
Query: 224 GCFRVL---DQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ------KRSANGNGVRQS 274
+ L S + + RP S S + + R Q S++ GV S
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 312
Query: 275 SVGRIPAKGSVRQRLHPGMLSSQ--DRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 332
G+ A S + + + Q T H +V G+ + DG + SA D ++LW+
Sbjct: 313 PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Query: 333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWS--GKTCLTFRGH 390
RN + +T+ +S +A + D + + K +W+ G+ T GH
Sbjct: 373 ----RNGQL-LQTLTGHSSSVRGVAFSPDGQTI--ASASDDKTVKLWNRNGQLLQTLTGH 425
Query: 391 YEYVNCCCFSSQDQELYTGGNDRQILVW 418
V FS DQ + + +D+ + +W
Sbjct: 426 SSSVWGVAFSPDDQTIASASDDKTVKLW 453
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 128/330 (38%), Gaps = 50/330 (15%)
Query: 93 VVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTA 152
V ++ H ++ + P D + S D VK+W+ N + V+ A
Sbjct: 6 VKERNRLEAHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 64
Query: 153 MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD 212
SP + IA+ ++D V+L + +G + QTL+GH + V +S + + + D
Sbjct: 65 FSPDGQT---IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDD 119
Query: 213 GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272
++ W+ R + L G +SSV GV
Sbjct: 120 KTVKLWN-RNGQLLQTL--------------------TGHSSSVW------------GVA 146
Query: 273 QSSVGRIPAKGSVRQRLHPGMLSSQ--DRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL 330
S G+ A S + + + Q T H +V G+ + DG + SA D ++L
Sbjct: 147 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Query: 331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW--SGKTCLTFR 388
W+ RN + +T+ +S +A + D + + K +W +G+ T
Sbjct: 207 WN----RNGQL-LQTLTGHSSSVRGVAFSPDGQT--IASASDDKTVKLWNRNGQLLQTLT 259
Query: 389 GHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
GH VN F Q + + +D+ + +W
Sbjct: 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 134/328 (40%), Gaps = 29/328 (8%)
Query: 107 SSAIW---YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLI 163
SS++W + D + S D VK+W+ N + V A SP + I
Sbjct: 57 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT---I 113
Query: 164 AAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223
A+ ++D V+L + +G + QTL+GH + V +S + + + D ++ W+ R
Sbjct: 114 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWN-RNG 170
Query: 224 GCFRVLD-QSQSQLGRRPPLLKRKSLSAGQNSSVK--PRAPQ------KRSANGNGVRQS 274
+ L S S G + SA + +VK R Q S++ GV S
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS 230
Query: 275 SVGRIPAKGSVRQRLHPGMLSSQ--DRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 332
G+ A S + + + Q T H +V G+ DG + SA D ++LW+
Sbjct: 231 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Query: 333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW--SGKTCLTFRGH 390
RN + +T+ +S +A + D + + K +W +G+ T GH
Sbjct: 291 ----RNGQL-LQTLTGHSSSVWGVAFSPDGQT--IASASDDKTVKLWNRNGQHLQTLTGH 343
Query: 391 YEYVNCCCFSSQDQELYTGGNDRQILVW 418
V FS Q + + +D+ + +W
Sbjct: 344 SSSVWGVAFSPDGQTIASASDDKTVKLW 371
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 41/234 (17%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
GH ++ + P D + S D VK+W+ N + V+ A SP
Sbjct: 383 GHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP---DD 438
Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
IA+ ++D V+L + +G + QTL+GH + V +S + + + D ++ W+
Sbjct: 439 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWN- 495
Query: 221 RRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280
R + L G +SSV+ GV S G+
Sbjct: 496 RNGQLLQTL--------------------TGHSSSVR------------GVAFSPDGQTI 523
Query: 281 AKGSVRQRLHPGMLSSQ--DRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 332
A S + + + Q T H +V G+ + DG + SA SD ++LW+
Sbjct: 524 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 126/308 (40%), Gaps = 60/308 (19%)
Query: 119 FVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
V+GS D+ +KVW C R ++ G V+ + M +I +G+ D +++
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGH--TGGVWSSQMRD-----NIIISGSTDRTLKVW 184
Query: 176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ 235
+ +G TL GH TV E +V+G D +R WDI C VL +
Sbjct: 185 NAETGECIHTLYGHTS---TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA 241
Query: 236 LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLS 295
+ R R+ +S + VK P+ + LH
Sbjct: 242 V-RCVQYDGRRVVSGAYDFMVKVWDPETETC----------------------LHT---- 274
Query: 296 SQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR--NTLVNFETVRLQTSKP 353
H V L+ DG++++S D+ IR+WDVE+G +TL +++ +
Sbjct: 275 ----LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL----TSG 324
Query: 354 IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG---HYEYVNCCCFSSQDQELYTGG 410
++L +D +V + VK +DI +G+ T +G H V C F+ + T
Sbjct: 325 MEL---KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSS 379
Query: 411 NDRQILVW 418
+D + +W
Sbjct: 380 DDGTVKLW 387
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 109/253 (43%), Gaps = 43/253 (16%)
Query: 6 GGREAGQIRPNSFANRVKSHRLSTLQLSNYK--EIVSPHKGSINSLQVDLTEERYLLSGA 63
GG + Q+R N + TL++ N + E + G ++++ E+ ++SG+
Sbjct: 160 GGVWSSQMRDNII---ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 216
Query: 64 SDSSVAVYDVQRA-TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-VDTGL--- 118
D+++ V+D++ + GH+A R V ++ G Y +W P +T L
Sbjct: 217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG-AYDFMVKVWDPETETCLHTL 275
Query: 119 ----------------FVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAAS 159
V+GS D ++VWD NC + +++ S +
Sbjct: 276 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG-------HQSLTSGMELK 328
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSG---HRDGIMTVEWSTSSEWILVTGGCDGAIR 216
++ +G D V++ DI +G QTL G H+ + ++++ + ++T DG ++
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVK 385
Query: 217 FWDIRRAGCFRVL 229
WD++ R L
Sbjct: 386 LWDLKTGEFIRNL 398
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 124/313 (39%), Gaps = 76/313 (24%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRA----TDYEGGGHIAKHRSVFVVDKQ 97
H G + S Q+ + ++SG++D ++ V++ + T Y GH + R + + +K+
Sbjct: 158 HTGGVWSSQM---RDNIIISGSTDRTLKVWNAETGECIHTLY---GHTSTVRCMHLHEKR 211
Query: 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN---CTRVVMNFKMPGKVYRTAMS 154
V+GS D ++VWD C V+M + A+
Sbjct: 212 ---------------------VVSGSRDATLRVWDIETGQCLHVLMG-------HVAAVR 243
Query: 155 PLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA 214
+ + +G D V++ D + TL GH + + ++++ +V+G D +
Sbjct: 244 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH---VVSGSLDTS 300
Query: 215 IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS 274
IR WD+ C L QS L L +S +S+VK +
Sbjct: 301 IRVWDVETGNCIHTLTGHQS-LTSGMELKDNILVSGNADSTVK-------------IWDI 346
Query: 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 334
G+ L + H AVT L+ ++ +++++ D ++LWD++
Sbjct: 347 KTGQC--------------LQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLK 390
Query: 335 SGR--NTLVNFET 345
+G LV E+
Sbjct: 391 TGEFIRNLVTLES 403
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 36/230 (15%)
Query: 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV---YRTAMSPLAAS--HMLIAAGTED 169
D+ + ++GS D V +W F +P K + +S LA S + + + D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 170 VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL 229
+RL D+ +G + GH+ + +V +S + IL + G + I+ W+I F
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGECKFSSA 156
Query: 230 DQSQSQ----LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV 285
++ R P++K + V+P AP S +G
Sbjct: 157 EKENHSDWVSCVRYSPIMKSAN-------KVQPFAPYFASVGWDG--------------- 194
Query: 286 RQRLHPGMLSSQDRAT--AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 333
RL + Q R T AH V L ++ +G Y+ + G D ++ +WD+
Sbjct: 195 --RLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 295 SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR------- 347
++ R H V + + D +LSAG++ I+LW++ G + E
Sbjct: 109 TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSC 167
Query: 348 LQTSKPIQLATTQDPAVVFVPCMTAVK---AFDIWSGKTCL--TFRGHYEYVNCCCFSSQ 402
++ S ++ A P F P +V +W+ + TF+ H VN S
Sbjct: 168 VRYSPIMKSANKVQP---FAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPN 224
Query: 403 DQELYTGGNDRQILVW 418
+ + TGG D+++L+W
Sbjct: 225 GKYIATGGKDKKLLIW 240
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 311 KVTEDGMYLLSAGSDSRIRLWDV-ESGRNTLVNFETVRLQTSKPI--QLATTQDPAVVFV 367
K ED L+S D + +W + E +N L LA +Q+
Sbjct: 34 KENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93
Query: 368 PCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
++ +D+ +G T F GH V FS ++++ + G +R+I +W
Sbjct: 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 301 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336
T H V+ L ++++ + +S+ D +RLWD+ +G
Sbjct: 73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG 108
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/319 (21%), Positives = 113/319 (35%), Gaps = 70/319 (21%)
Query: 148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILV 207
V R P+ + ++ + +ED +++ D +G +TL GH D + + + S + +L
Sbjct: 111 VTRVIFHPVFS---VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLA 166
Query: 208 TGGCDGAIRFWDIRRAGCFRVL---DQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK- 263
+ D I+ WD + C R + D + S + P +SA ++ ++K Q
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTG 224
Query: 264 --------------------------RSANGNGVRQSSVGRIPAKGSVRQRLH------- 290
+N VR V K +R+ H
Sbjct: 225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 284
Query: 291 --PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR--NTLVNFET- 345
SS AT +G + G +LLS D I++WDV +G TLV +
Sbjct: 285 APESSYSSISEATGSETKKSG----KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 346 ---VRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW--SGKTCL-TFRGHYEYVNCCCF 399
V + L+ D K +W K C+ T H +V F
Sbjct: 341 VRGVLFHSGGKFILSCADD------------KTLRVWDYKNKRCMKTLNAHEHFVTSLDF 388
Query: 400 SSQDQELYTGGNDRQILVW 418
+ TG D+ + VW
Sbjct: 389 HKTAPYVVTGSVDQTVKVW 407
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 22/149 (14%)
Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAAS 159
HGH + +SS P + V+ S D +K+W+ V F G M
Sbjct: 189 HGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQD 245
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW--------------- 204
LIA+ + D VR+ +A+ L HR + + W+ S +
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 205 ----ILVTGGCDGAIRFWDIRRAGCFRVL 229
L++G D I+ WD+ C L
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 35/181 (19%)
Query: 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRAT---------------- 301
PR P+K + +G+ R P + + M+S+ + AT
Sbjct: 96 PRPPEKYALSGH--------RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK 147
Query: 302 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT-- 359
H +V + G L S +D I+LWD + FE +R +++
Sbjct: 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-------GFECIRTMHGHDHNVSSVSI 200
Query: 360 --QDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV 417
+V +K +++ +G TF GH E+V + + + ND+ + V
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 418 W 418
W
Sbjct: 261 W 261
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 89/195 (45%), Gaps = 20/195 (10%)
Query: 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGG-GHIAKHRSVFVVDKQH 98
S H S+ +++ + ++ L SG ++ + ++D+ + T+ + +S+ VD+
Sbjct: 110 SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE-- 167
Query: 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV--MNFKMPGKVYRTAMS-- 154
+ S W +F + ++ +WD + V +++ P + +S
Sbjct: 168 -------VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV 220
Query: 155 ---PLAASHMLIAAGTE-DVQVRLCDIASGAIS-QTLS-GHRDGIMTVEWSTSSEWILVT 208
P ++ + A G++ D + + D+ + QTL+ GH+ GI++++W E +L++
Sbjct: 221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280
Query: 209 GGCDGAIRFWDIRRA 223
G D + W+ A
Sbjct: 281 SGRDNTVLLWNPESA 295
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAA 158
GH+ I S W D L ++ D+ V +W+ + F G ++T +P A
Sbjct: 259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAP 318
Query: 159 SHMLIAAGTEDVQVR 173
A+ ++V+
Sbjct: 319 DLFACASFDNKIEVQ 333
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Query: 112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
+ D T S D VK+W++ +V + + ++ H+L+A G+ D
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCF 730
Query: 172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231
++L D+ T+ GH + + +S + +L + DG ++ WD A + ++
Sbjct: 731 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDK-LLASCSADGTLKLWDATSANERKSINV 789
Query: 232 SQSQLGRRPP 241
Q L P
Sbjct: 790 KQFFLNLEDP 799
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362
H AV +EDG + S G+D ++++ E+G L ++ + + A + D
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLL----EIKAHEDEVLCCAFSTDD 675
Query: 363 AVVFVPCMTAVKAFDIW---SGKTCLTFRGHYEYVNCCCFSSQDQELY--TGGNDRQILV 417
F+ + K IW +G+ T+ H E VNCC F++ L TG +D + +
Sbjct: 676 R--FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 418 W 418
W
Sbjct: 734 W 734
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 26/122 (21%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362
H V G+ + DG L++ D IRLW ET ++ + + L D
Sbjct: 887 HLSWVHGVMFSPDGSSFLTSSDDQTIRLW------------ETKKVCKNSAVMLKQEVDV 934
Query: 363 AV----VFVPCMTAVKAFDIWSGKTCLTFRGHYEY-----VNCCCFSSQDQELYTGGNDR 413
V V + ++ + +G+T G +Y V+CCC S Q + G +
Sbjct: 935 VFQENEVMVLAVDHIRRLQLINGRT-----GQIDYLTEAQVSCCCLSPHLQYIAFGDENG 989
Query: 414 QI 415
I
Sbjct: 990 AI 991
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 287 QRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT 339
+ LH S++ A H G VT L + DG L+SAG I+ W+V +G ++
Sbjct: 1166 ELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIKWWNVVTGESS 1216
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 319 LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDI 378
LLS D +++W++ +G N E + + A F +A K I
Sbjct: 1064 LLSWSFDGTVKVWNIITG-----NKEKDFVCHQGTVLSCDISHDATKF-SSTSADKTAKI 1117
Query: 379 WSGKTCL---TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
WS L RGH V C FS L TG ++ +I +W
Sbjct: 1118 WSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 84/189 (44%), Gaps = 15/189 (7%)
Query: 38 IVSPHKGSINSLQ-VDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDK 96
+ H ++ L V+ +Y+++G+ D+++ V+ + + + G + VF +
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 97 QHEH------GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR 150
++ + GH ++ + + + V+GSYD+ + VWD + + + + G R
Sbjct: 258 ENPYFVGVLRGHXASVRTVSGHG---NIVVSGSYDNTLIVWDVAQXKCL--YILSGHTDR 312
Query: 151 TAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG 210
+ + + D +R+ D+ +G + TL GH + + S LV+
Sbjct: 313 IYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK---FLVSAA 369
Query: 211 CDGAIRFWD 219
DG+IR WD
Sbjct: 370 ADGSIRGWD 378
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 110/266 (41%), Gaps = 33/266 (12%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
+ G +D +R+ D + LSGH G+ ++++ ILV+G D +R WDI++
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKK 192
Query: 223 AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282
C V + S + R +++ K++ K G+ V ++P +
Sbjct: 193 GCCTHVFEGHNSTV-RCLDIVEYKNI--------------KYIVTGSRDNTLHVWKLPKE 237
Query: 283 GSV----RQRLHPGMLSSQDRATAHYGAVTG-----LKVTEDGMYLLSAGSDSRIRLWDV 333
SV + +P + + + G + G V+ G ++S D+ + +WDV
Sbjct: 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDV 297
Query: 334 ESGRNT-LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE 392
+ +++ T R+ ++ + + + T ++ +D+ +G+ T +GH
Sbjct: 298 AQXKCLYILSGHTDRIYST----IYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTA 353
Query: 393 YVNCCCFSSQDQELYTGGNDRQILVW 418
V S D+ L + D I W
Sbjct: 354 LVGLLRLS--DKFLVSAAADGSIRGW 377
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 53/202 (26%)
Query: 55 EERYLLSGASDSSVAVYD-VQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP 113
E+ Y+++GA D + VYD + + + GH V ++ HG
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGG-----VWALKYAHG------------ 173
Query: 114 VDTGLFVTGSYDHYVKVWDTN---CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV 170
G+ V+GS D V+VWD CT V F+ R + I G+ D
Sbjct: 174 ---GILVSGSTDRTVRVWDIKKGCCTHV---FEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 171 QVRLCDIASGA-----------------------ISQTLSGHRDGIMTVEWSTSSEWILV 207
+ + + + L GH + TV + I+V
Sbjct: 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGN---IVV 284
Query: 208 TGGCDGAIRFWDIRRAGCFRVL 229
+G D + WD+ + C +L
Sbjct: 285 SGSYDNTLIVWDVAQXKCLYIL 306
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 84/189 (44%), Gaps = 15/189 (7%)
Query: 38 IVSPHKGSINSLQ-VDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDK 96
+ H ++ L V+ +Y+++G+ D+++ V+ + + + G + VF +
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 97 QHEH------GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR 150
++ + GH ++ + + + V+GSYD+ + VWD + + + + G R
Sbjct: 258 ENPYFVGVLRGHMASVRTVSGHG---NIVVSGSYDNTLIVWDVAQMKCL--YILSGHTDR 312
Query: 151 TAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG 210
+ + + D +R+ D+ +G + TL GH + + S LV+
Sbjct: 313 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK---FLVSAA 369
Query: 211 CDGAIRFWD 219
DG+IR WD
Sbjct: 370 ADGSIRGWD 378
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 110/266 (41%), Gaps = 33/266 (12%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
+ G +D +R+ D + LSGH G+ ++++ ILV+G D +R WDI++
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKK 192
Query: 223 AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282
C V + S + R +++ K++ K G+ V ++P +
Sbjct: 193 GCCTHVFEGHNSTV-RCLDIVEYKNI--------------KYIVTGSRDNTLHVWKLPKE 237
Query: 283 GSV----RQRLHPGMLSSQDRATAHYGAVTG-----LKVTEDGMYLLSAGSDSRIRLWDV 333
SV + +P + + + G + G V+ G ++S D+ + +WDV
Sbjct: 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV 297
Query: 334 ESGRNT-LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE 392
+ +++ T R+ ++ + + + T ++ +D+ +G+ T +GH
Sbjct: 298 AQMKCLYILSGHTDRIYST----IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 353
Query: 393 YVNCCCFSSQDQELYTGGNDRQILVW 418
V S D+ L + D I W
Sbjct: 354 LVGLLRLS--DKFLVSAAADGSIRGW 377
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 53/202 (26%)
Query: 55 EERYLLSGASDSSVAVYD-VQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP 113
E+ Y+++GA D + VYD + + + GH V ++ HG
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG-----VWALKYAHG------------ 173
Query: 114 VDTGLFVTGSYDHYVKVWDTN---CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV 170
G+ V+GS D V+VWD CT V F+ R + I G+ D
Sbjct: 174 ---GILVSGSTDRTVRVWDIKKGCCTHV---FEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 171 QVRLCDIASGA-----------------------ISQTLSGHRDGIMTVEWSTSSEWILV 207
+ + + + L GH + TV + I+V
Sbjct: 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN---IVV 284
Query: 208 TGGCDGAIRFWDIRRAGCFRVL 229
+G D + WD+ + C +L
Sbjct: 285 SGSYDNTLIVWDVAQMKCLYIL 306
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
H I S+ V T+ Y+LSG+ D +V +++ + E Q G
Sbjct: 96 HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE----------------QTFEG 138
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR----TAMSPLA 157
H++ + + P D F +G D VKVW + + NF + R PL
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
+I A ++D+ +++ D + + TL GH + + + I+++G DG ++
Sbjct: 197 DKPYMITA-SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 218 WD 219
W+
Sbjct: 255 WN 256
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 113 PVDTGLFV-------TGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIA 164
PV G F+ GS D ++V++ N V++F+ P + A+ P + +
Sbjct: 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP---TKPYVL 113
Query: 165 AGTEDVQVRLCDIASG-AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
+G++D+ V+L + + A+ QT GH +M V ++ +G D ++ W +
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 33/141 (23%)
Query: 318 YLLSAGSDSRIRLWDVESGRNTLVNFE-------TVRLQTSKPIQLATTQDPAVVFVPCM 370
+++ D RIR+++ +G +V+FE ++ + +KP L+ + D
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEK-VVDFEAHPDYIRSIAVHPTKPYVLSGSDD--------- 118
Query: 371 TAVKAFDIWSGKTCL--TFRGHYEYVNCCCFSSQDQELYTGGN-DRQILVW-----CPSR 422
VK ++ W L TF GH +V C F+ +D + G DR + VW P+
Sbjct: 119 LTVKLWN-WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 423 HISDG-------VDAGPMQDQ 436
++ G VD P+ D+
Sbjct: 178 TLTTGQERGVNYVDYYPLPDK 198
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
H I S+ V T+ Y+LSG+ D +V +++ + E Q G
Sbjct: 96 HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE----------------QTFEG 138
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR----TAMSPLA 157
H++ + + P D F +G D VKVW + + NF + R PL
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
+I A ++D+ +++ D + + TL GH + + + I+++G DG ++
Sbjct: 197 DKPYMITA-SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 218 WD 219
W+
Sbjct: 255 WN 256
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 113 PVDTGLFV-------TGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIA 164
PV G F+ GS D ++V++ N V++F+ P + A+ P + +
Sbjct: 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP---TKPYVL 113
Query: 165 AGTEDVQVRLCDIASG-AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
+G++D+ V+L + + A+ QT GH +M V ++ +G D ++ W +
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 33/141 (23%)
Query: 318 YLLSAGSDSRIRLWDVESGRNTLVNFE-------TVRLQTSKPIQLATTQDPAVVFVPCM 370
+++ D RIR+++ +G +V+FE ++ + +KP L+ + D
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEK-VVDFEAHPDYIRSIAVHPTKPYVLSGSDD--------- 118
Query: 371 TAVKAFDIWSGKTCL--TFRGHYEYVNCCCFSSQDQELYTGGN-DRQILVW-----CPSR 422
VK ++ W L TF GH +V C F+ +D + G DR + VW P+
Sbjct: 119 LTVKLWN-WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 423 HISDG-------VDAGPMQDQ 436
++ G VD P+ D+
Sbjct: 178 TLTTGQERGVNYVDYYPLPDK 198
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 114/278 (41%), Gaps = 40/278 (14%)
Query: 62 GASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121
G DS+ +++++ D +G +++ + GHK SS + P +T
Sbjct: 126 GGLDSACSIFNLSSQADRDGNMPVSRVLT----------GHKGYASSCQYVPDQETRLIT 175
Query: 122 GSYDHYVKVWDTNCTRVVMNF--KMP----GKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
GS D +WD + + F + P V +++ L A+ + +G+ D VRL
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN--MFISGSCDTTVRLW 233
Query: 176 D--IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQ 233
D I S A+ +T GH I +V++ + TG DG R +D+R +V ++
Sbjct: 234 DLRITSRAV-RTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREP 291
Query: 234 SQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGM 293
+ P++ + S+ R +NG+ ++ L +
Sbjct: 292 DRNDNELPIVTSVAF------SISGRLLFAGYSNGDCYVWDTL------------LAEMV 333
Query: 294 LSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331
L+ +H G ++ L ++ DG L + D +++W
Sbjct: 334 LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 79/372 (21%), Positives = 135/372 (36%), Gaps = 51/372 (13%)
Query: 72 DVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVW 131
DV++ + +G ++ + + V + + GH + S W P + V+ S D + VW
Sbjct: 36 DVEKYSKAQGRTAVSFNPTDLVCCRTLQ-GHSGKVYSLDWTP-EKNWIVSASQDGRLIVW 93
Query: 132 DTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-------IS 183
+ ++ K+ V A +P S +A G D + +++S A +S
Sbjct: 94 NALTSQKTHAIKLHCPWVMECAFAPNGQS---VACGGLDSACSIFNLSSQADRDGNMPVS 150
Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243
+ L+GH+ + ++ E L+TG D WD+ Q S G P
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG-------QRISIFGSEFP-- 201
Query: 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRAT-- 301
+G + V + +AN + GS + L RA
Sbjct: 202 ------SGHTADVLSLSINSLNAN-----------MFISGSCDTTVRLWDLRITSRAVRT 244
Query: 302 --AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV-NFETVRLQTSKPI--QL 356
H G + +K DG + D RL+D+ +G V N E R PI +
Sbjct: 245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV 304
Query: 357 ATTQDPAVVFVPCMTA-VKAFDIWSGKTCLTF----RGHYEYVNCCCFSSQDQELYTGGN 411
A + ++F +D + L H ++C SS L TG
Sbjct: 305 AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364
Query: 412 DRQILVWCPSRH 423
D+ + +W S H
Sbjct: 365 DKNLKIWAFSGH 376
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 25/195 (12%)
Query: 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQ 97
+++ HKG +S Q +E L++G+ D + ++DV + + + +
Sbjct: 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG------------QRISIFGSE 199
Query: 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT-RVVMNFK-MPGKVYRTAMSP 155
GH + S ++ +F++GS D V++WD T R V + G + P
Sbjct: 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259
Query: 156 LAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG-------IMTVEWSTSSEWILVT 208
G++D RL D+ +G Q + D + +V +S S +L
Sbjct: 260 ---DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFA 315
Query: 209 GGCDGAIRFWDIRRA 223
G +G WD A
Sbjct: 316 GYSNGDCYVWDTLLA 330
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
H G + SL + + R +SGA D+S ++DV+ EG + +Q G
Sbjct: 183 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 224
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
H+ I++ ++P + F TGS D +++D + +M + + + S
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
L+ AG +D + D + L+GH D ++ T + TG D ++ W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
I + D L DI +G + T +GH +M++ + + + V+G CD + + WD+R
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVRE 215
Query: 223 AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV----KPRAPQKRSANGN--------G 270
C + +S + + + G + + RA Q+ +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRA---TAHYGAVTGLKVTEDGMYLLSAGSDSR 327
V S GR+ G + DRA H V+ L VT+DGM + + DS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 328 IRLWD 332
+++W+
Sbjct: 336 LKIWN 340
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 34/231 (14%)
Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243
+TL GH I + W T S +L++ DG + WD + PL
Sbjct: 49 RTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHAI-----------PLR 96
Query: 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH 303
++ AP +GN V + I + +++ R G + H
Sbjct: 97 SSWVMTCAY-------AP-----SGNYVACGGLDNICSIYNLKTR--EGNVRVSRELAGH 142
Query: 304 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPA 363
G ++ + +D + S+G D+ LWD+E+G+ T T T + L+ D
Sbjct: 143 TGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQT----TTFTGHTGDVMSLSLAPDTR 197
Query: 364 VVFV--PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412
+ FV C + K +D+ G TF GH +N CF TG +D
Sbjct: 198 L-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173
DT LFV+G+ D K+WD F + P + A G++D R
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCR 251
Query: 174 LCDIASGAISQTLSGHRD---GIMTVEWSTSSEWILVTGGCDGAIRFWD---IRRAGCFR 227
L D+ + T S H + GI +V +S S +L+ G D WD RAG
Sbjct: 252 LFDLRADQELMTYS-HDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 228 VLDQSQSQLG 237
D S LG
Sbjct: 310 GHDNRVSCLG 319
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362
H + + D LLSA D ++ +WD T + L++S + A P
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWD----SYTTNKVHAIPLRSSWVMTCAYA--P 107
Query: 363 AVVFVPCMTAVKAFDIWSGKT-------CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQI 415
+ +V C I++ KT GH Y++CC F D ++ T D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 416 LVW 418
+W
Sbjct: 167 ALW 169
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 23/140 (16%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG--RNTLVNFET-VRLQTSKP--IQLA 357
H G V L + D +S D+ +LWDV G R T E+ + P A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 358 TTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC------FSSQDQELYTGGN 411
T D A + FD+ + + +T Y + N C FS + L G +
Sbjct: 243 TGSDDAT--------CRLFDLRADQELMT----YSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 412 DRQILVWCPSRHISDGVDAG 431
D VW + GV AG
Sbjct: 291 DFNCNVWDALKADRAGVLAG 310
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
H G + SL + + R +SGA D+S ++DV+ EG + +Q G
Sbjct: 183 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 224
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
H+ I++ ++P + F TGS D +++D + +M + + + S
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
L+ AG +D + D + L+GH D ++ T + TG D ++ W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 34/231 (14%)
Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243
+TL GH I + W T S +LV+ DG + WD + PL
Sbjct: 49 RTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAI-----------PLR 96
Query: 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH 303
++ AP +GN V + I + +++ R G + H
Sbjct: 97 SSWVMTCAY-------AP-----SGNYVACGGLDNICSIYNLKTR--EGNVRVSRELAGH 142
Query: 304 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPA 363
G ++ + +D + S+G D+ LWD+E+G+ T T T + L+ D
Sbjct: 143 TGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQT----TTFTGHTGDVMSLSLAPDTR 197
Query: 364 VVFV--PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412
+ FV C + K +D+ G TF GH +N CF TG +D
Sbjct: 198 L-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
I + D L DI +G + T +GH +M++ + + + V+G CD + + WD+R
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVRE 215
Query: 223 AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV----KPRAPQKRSANGN--------G 270
C + +S + + + G + + RA Q+ +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRA---TAHYGAVTGLKVTEDGMYLLSAGSDSR 327
V S GR+ G + DRA H V+ L VT+DGM + + DS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 328 IRLWD 332
+++W+
Sbjct: 336 LKIWN 340
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173
DT LFV+G+ D K+WD F + P + A G++D R
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCR 251
Query: 174 LCDIASGAISQTLSGHRD---GIMTVEWSTSSEWILVTGGCDGAIRFWD---IRRAGCFR 227
L D+ + T S H + GI +V +S S +L+ G D WD RAG
Sbjct: 252 LFDLRADQELMTYS-HDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 228 VLDQSQSQLG 237
D S LG
Sbjct: 310 GHDNRVSCLG 319
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 23/140 (16%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG--RNTLVNFET-VRLQTSKP--IQLA 357
H G V L + D +S D+ +LWDV G R T E+ + P A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 358 TTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC------FSSQDQELYTGGN 411
T D A + FD+ + + +T Y + N C FS + L G +
Sbjct: 243 TGSDDAT--------CRLFDLRADQELMT----YSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 412 DRQILVWCPSRHISDGVDAG 431
D VW + GV AG
Sbjct: 291 DFNCNVWDALKADRAGVLAG 310
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362
H + + D L+SA D ++ +WD T + L++S + A P
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWD----SYTTNKVHAIPLRSSWVMTCAYA--P 107
Query: 363 AVVFVPCMTAVKAFDIWSGKT-------CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQI 415
+ +V C I++ KT GH Y++CC F D ++ T D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 416 LVW 418
+W
Sbjct: 167 ALW 169
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
H G + SL + + R +SGA D+S ++DV+ EG + +Q G
Sbjct: 183 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 224
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
H+ I++ ++P + F TGS D +++D + +M + + + S
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
L+ AG +D + D + L+GH D ++ T + TG D ++ W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
I + D L DI +G + T +GH +M++ + + + V+G CD + + WD+R
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVRE 215
Query: 223 AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV----KPRAPQKRSANGN--------G 270
C + +S + + + G + + RA Q+ +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRA---TAHYGAVTGLKVTEDGMYLLSAGSDSR 327
V S GR+ G + DRA H V+ L VT+DGM + + DS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 328 IRLWD 332
+++W+
Sbjct: 336 LKIWN 340
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 34/231 (14%)
Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243
+TL GH I + W T S +L++ DG + WD + PL
Sbjct: 49 RTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHAI-----------PLR 96
Query: 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH 303
++ AP +GN V + I + +++ R G + H
Sbjct: 97 SSWVMTCAY-------AP-----SGNYVACGGLDNICSIYNLKTR--EGNVRVSRELAGH 142
Query: 304 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPA 363
G ++ + +D + S+G D+ LWD+E+G+ T T T + L+ D
Sbjct: 143 TGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQT----TTFTGHTGDVMSLSLAPDTR 197
Query: 364 VVFV--PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412
+ FV C + K +D+ G TF GH +N CF TG +D
Sbjct: 198 L-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173
DT LFV+G+ D K+WD F + P + A G++D R
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCR 251
Query: 174 LCDIASGAISQTLSGHRD---GIMTVEWSTSSEWILVTGGCDGAIRFWD---IRRAGCFR 227
L D+ + T S H + GI +V +S S +L+ G D WD RAG
Sbjct: 252 LFDLRADQELMTYS-HDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 228 VLDQSQSQLG 237
D S LG
Sbjct: 310 GHDNRVSCLG 319
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362
H + + D LLSA D ++ +WD T + L++S + A P
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWD----SYTTNKVHAIPLRSSWVMTCAYA--P 107
Query: 363 AVVFVPCMTAVKAFDIWSGKT-------CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQI 415
+ +V C I++ KT GH Y++CC F D ++ T D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 416 LVW 418
+W
Sbjct: 167 ALW 169
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 23/140 (16%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG--RNTLVNFET-VRLQTSKP--IQLA 357
H G V L + D +S D+ +LWDV G R T E+ + P A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 358 TTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC------FSSQDQELYTGGN 411
T D A + FD+ + + +T Y + N C FS + L G +
Sbjct: 243 TGSDDAT--------CRLFDLRADQELMT----YSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 412 DRQILVWCPSRHISDGVDAG 431
D VW + GV AG
Sbjct: 291 DFNCNVWDALKADRAGVLAG 310
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
H G + SL + + R +SGA D+S ++DV+ EG + +Q G
Sbjct: 183 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 224
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
H+ I++ ++P + F TGS D +++D + +M + + + S
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
L+ AG +D + D + L+GH D ++ T + TG D ++ W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 34/231 (14%)
Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243
+TL GH I + W T S +LV+ DG + WD + PL
Sbjct: 49 RTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAI-----------PLR 96
Query: 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH 303
++ AP +GN V + I + +++ R G + H
Sbjct: 97 SSWVMTCAY-------AP-----SGNYVACGGLDNICSIYNLKTR--EGNVRVSRELAGH 142
Query: 304 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPA 363
G ++ + +D + S+G D+ LWD+E+G+ T T T + L+ D
Sbjct: 143 TGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQT----TTFTGHTGDVMSLSLAPDTR 197
Query: 364 VVFV--PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412
+ FV C + K +D+ G TF GH +N CF TG +D
Sbjct: 198 L-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
I + D L DI +G + T +GH +M++ + + + V+G CD + + WD+R
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVRE 215
Query: 223 AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV----KPRAPQKRSANGN--------G 270
C + +S + + + G + + RA Q+ +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRA---TAHYGAVTGLKVTEDGMYLLSAGSDSR 327
V S GR+ G + DRA H V+ L VT+DGM + + DS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 328 IRLWD 332
+++W+
Sbjct: 336 LKIWN 340
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173
DT LFV+G+ D K+WD F + P + A G++D R
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCR 251
Query: 174 LCDIASGAISQTLSGHRD---GIMTVEWSTSSEWILVTGGCDGAIRFWD---IRRAGCFR 227
L D+ + T S H + GI +V +S S +L+ G D WD RAG
Sbjct: 252 LFDLRADQELMTYS-HDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 228 VLDQSQSQLG 237
D S LG
Sbjct: 310 GHDNRVSCLG 319
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 23/140 (16%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG--RNTLVNFET-VRLQTSKP--IQLA 357
H G V L + D +S D+ +LWDV G R T E+ + P A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 358 TTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC------FSSQDQELYTGGN 411
T D A + FD+ + + +T Y + N C FS + L G +
Sbjct: 243 TGSDDAT--------CRLFDLRADQELMT----YSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 412 DRQILVWCPSRHISDGVDAG 431
D VW + GV AG
Sbjct: 291 DFNCNVWDALKADRAGVLAG 310
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362
H + + D L+SA D ++ +WD T + L++S + A P
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWD----SYTTNKVHAIPLRSSWVMTCAYA--P 107
Query: 363 AVVFVPCMTAVKAFDIWSGKT-------CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQI 415
+ +V C I++ KT GH Y++CC F D ++ T D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 416 LVW 418
+W
Sbjct: 167 ALW 169
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
H G + SL + + R +SGA D+S ++DV+ EG + +Q G
Sbjct: 194 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 235
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
H+ I++ ++P + F TGS D +++D + +M + + + S
Sbjct: 236 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 294
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
L+ AG +D + D + L+GH D ++ T + TG D ++ W+
Sbjct: 295 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 89/231 (38%), Gaps = 34/231 (14%)
Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243
+TL GH I + W T S +LV+ DG + WD + PL
Sbjct: 60 RTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAI-----------PLR 107
Query: 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH 303
++ AP +GN V + I + +++ R G + H
Sbjct: 108 SSWVMTCAY-------AP-----SGNYVACGGLDNICSIYNLKTR--EGNVRVSRELAGH 153
Query: 304 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPA 363
G ++ + +D + S+G D+ LWD+E+G+ T T T + L+ D
Sbjct: 154 TGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQT----TTFTGHTGDVMSLSLAPDTR 208
Query: 364 VVFV--PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412
+ FV C + K +D+ G TF GH +N CF TG +D
Sbjct: 209 L-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 258
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
I + D L DI +G + T +GH +M++ + + + V+G CD + + WD+R
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVRE 226
Query: 223 AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV----KPRAPQKRSANGN--------G 270
C + +S + + + G + + RA Q+ +
Sbjct: 227 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 286
Query: 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRA---TAHYGAVTGLKVTEDGMYLLSAGSDSR 327
V S GR+ G + DRA H V+ L VT+DGM + + DS
Sbjct: 287 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 346
Query: 328 IRLWD 332
+++W+
Sbjct: 347 LKIWN 351
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173
DT LFV+G+ D K+WD F + P + A G++D R
Sbjct: 206 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA---FATGSDDATCR 262
Query: 174 LCDIASGAISQTLSGHRD---GIMTVEWSTSSEWILVTGGCDGAIRFWD---IRRAGCFR 227
L D+ + T S H + GI +V +S S +L+ G D WD RAG
Sbjct: 263 LFDLRADQELMTYS-HDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLA 320
Query: 228 VLDQSQSQLG 237
D S LG
Sbjct: 321 GHDNRVSCLG 330
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 23/140 (16%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG--RNTLVNFET-VRLQTSKP--IQLA 357
H G V L + D +S D+ +LWDV G R T E+ + P A
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 358 TTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC------FSSQDQELYTGGN 411
T D A + FD+ + + +T Y + N C FS + L G +
Sbjct: 254 TGSDDAT--------CRLFDLRADQELMT----YSHDNIICGITSVSFSKSGRLLLAGYD 301
Query: 412 DRQILVWCPSRHISDGVDAG 431
D VW + GV AG
Sbjct: 302 DFNCNVWDALKADRAGVLAG 321
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362
H + + D L+SA D ++ +WD T + L++S + A P
Sbjct: 65 HLAKIYAMHWGTDSRLLVSASQDGKLIIWD----SYTTNKVHAIPLRSSWVMTCAYA--P 118
Query: 363 AVVFVPCMTAVKAFDIWSGKT-------CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQI 415
+ +V C I++ KT GH Y++CC F D ++ T D
Sbjct: 119 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 177
Query: 416 LVW 418
+W
Sbjct: 178 ALW 180
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
H I S+ V T+ Y+LSG+ D +V +++ + E Q G
Sbjct: 96 HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE----------------QTFEG 138
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG----KVYRTAMSPLA 157
H++ + + P D F +G D VKVW + + NF + V PL
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
+I A ++D+ +++ D + + TL GH + + + I+++G DG ++
Sbjct: 197 DKPYMITA-SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 218 WD 219
W+
Sbjct: 255 WN 256
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 113 PVDTGLFV-------TGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIA 164
PV G F+ GS D ++V++ N V++F+ P + A+ P + +
Sbjct: 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP---TKPYVL 113
Query: 165 AGTEDVQVRLCDIASG-AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
+G++D+ V+L + + A+ QT GH +M V ++ +G D ++ W +
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 33/141 (23%)
Query: 318 YLLSAGSDSRIRLWDVESGRNTLVNFE-------TVRLQTSKPIQLATTQDPAVVFVPCM 370
+++ D RIR+++ +G +V+FE ++ + +KP L+ + D
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEK-VVDFEAHPDYIRSIAVHPTKPYVLSGSDD--------- 118
Query: 371 TAVKAFDIWSGKTCL--TFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVW-----CPSR 422
VK ++ W L TF GH +V C F+ +D + G DR + VW P+
Sbjct: 119 LTVKLWN-WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 423 HISDG-------VDAGPMQDQ 436
++ G VD P+ D+
Sbjct: 178 TLTTGQERGVNYVDYYPLPDK 198
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 162 LIAAGTEDVQVRLCDIASGAISQ-------TLSGHRDGIMTVEWSTSSEWILVTGGCDGA 214
+IA+G+ED V + +I G + TL GH + V W +++ +L++ GCD
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Query: 215 IRFWDI 220
I WD+
Sbjct: 156 ILVWDV 161
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 15/150 (10%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP--------GKVYRTA 152
GH + W P + + +GS D V VW+ +V+ + P +V A
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 153 MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG--HRDGIMTVEWSTSSEWILVTGG 210
P A ++L++AG ++V + + D+ +GA TL H D I +V+WS ++ T
Sbjct: 139 WHP-TAQNVLLSAGCDNV-ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-LICTSC 195
Query: 211 CDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
D +R + R+ V ++ + G RP
Sbjct: 196 RDKRVRVIEPRKGTV--VAEKDRPHEGTRP 223
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 20/173 (11%)
Query: 56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115
+ + SG+ D +V V+++ +GG + V ++ GH + W+P
Sbjct: 94 DNVIASGSEDCTVMVWEIP-----DGGLVLPLREPVITLE-----GHTKRVGIVAWHPTA 143
Query: 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQV 172
+ ++ D+ + VWD V+ P +Y S A LI D +V
Sbjct: 144 QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA---LICTSCRDKRV 200
Query: 173 RLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG----CDGAIRFWDIR 221
R+ + G + +G V SE ++T G + + WD +
Sbjct: 201 RVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK 253
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
H I S+ V T+ Y+LSG+ D +V +++ + E Q G
Sbjct: 96 HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE----------------QTFEG 138
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR----TAMSPLA 157
H++ + + P D F +G D VKVW + + NF + R PL
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
+I A ++D+ +++ D + + TL GH + + + I+++G DG ++
Sbjct: 197 DKPYMITA-SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 218 WD 219
W+
Sbjct: 255 WN 256
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 113 PVDTGLFV-------TGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIA 164
PV G F+ GS D ++V++ N V++F+ P + A+ P + +
Sbjct: 57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP---TKPYVL 113
Query: 165 AGTEDVQVRLCDIASG-AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
+G++D+ V+L + + A+ QT GH +M V ++ +G D ++ W +
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 33/141 (23%)
Query: 318 YLLSAGSDSRIRLWDVESGRNTLVNFE-------TVRLQTSKPIQLATTQDPAVVFVPCM 370
+++ D RIR+++ +G +V+FE ++ + +KP L+ + D
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEK-VVDFEAHPDYIRSIAVHPTKPYVLSGSDD--------- 118
Query: 371 TAVKAFDIWSGKTCL--TFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVW-----CPSR 422
VK ++ W L TF GH +V C F+ +D + G DR + VW P+
Sbjct: 119 LTVKLWN-WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 423 HISDG-------VDAGPMQDQ 436
++ G VD P+ D+
Sbjct: 178 TLTTGQERGVNYVDYYPLPDK 198
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 42/247 (17%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR-----TAMSP 155
GH ++ P + ++ S D + +W TR N+ +P + R +
Sbjct: 13 GHNGWVTQIATTPQFPDMILSASRDKTIIMW--KLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 156 LAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI 215
+++ +G+ D +RL D+ +G ++ GH +++V +S+ + I V+G D I
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI-VSGSRDKTI 129
Query: 216 RFWDIRRAGCFRVLDQSQSQ----LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271
+ W+ + V D+S S+ + P +S G + VK N +
Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331
H G + + V+ DG S G D + LW
Sbjct: 190 ------------------------------GHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Query: 332 DVESGRN 338
D+ G++
Sbjct: 220 DLNEGKH 226
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 113/287 (39%), Gaps = 48/287 (16%)
Query: 54 TEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP 113
++ ++ LSG+ D ++ ++D+ T R V GH + S +
Sbjct: 73 SDGQFALSGSWDGTLRLWDLTTGT--------TTRRFV---------GHTKDVLSVA-FS 114
Query: 114 VDTGLFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D V+GS D +K+W+T C V + V SP +++ ++++ G + +
Sbjct: 115 SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL- 173
Query: 172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231
V++ ++A+ + GH + TV S + +GG DG WD+ LD
Sbjct: 174 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 232 SQ--SQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL 289
+ L P R L A S+K + G+I + L
Sbjct: 233 GDIINALCFSP---NRYWLCAATGPSIKIWDLE--------------GKI-----IVDEL 270
Query: 290 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336
++S+ +A T L + DG L + +D+ +R+W V G
Sbjct: 271 KQEVISTSSKAEPP--QCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 64/175 (36%), Gaps = 44/175 (25%)
Query: 286 RQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL----- 340
R + G+ R +H+ V+ + ++ DG + LS D +RLWD+ +G T
Sbjct: 47 RDETNYGIPQRALRGHSHF--VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 104
Query: 341 ------VNF-------------ETVRLQTSKPIQLATTQD------------------PA 363
V F +T++L + + T QD P
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164
Query: 364 VVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
+V VK +++ + K GH Y+N S +GG D Q ++W
Sbjct: 165 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 17/199 (8%)
Query: 149 YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW-ILV 207
Y +A S S M I + D L D+ SG + Q+ GH ++ ++ + S V
Sbjct: 156 YLSACS-FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214
Query: 208 TGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS------------ 255
+GGCD WD+R C + + +S + + ++G + +
Sbjct: 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274
Query: 256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA---VTGLKV 312
V + + + V S GR+ G ++ + R + +G V+ L+V
Sbjct: 275 VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRV 334
Query: 313 TEDGMYLLSAGSDSRIRLW 331
+ DG S D +R+W
Sbjct: 335 SPDGTAFCSGSWDHTLRVW 353
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 117/334 (35%), Gaps = 48/334 (14%)
Query: 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDK 96
E ++ K SL+ L EER L V ++ V + G + R++
Sbjct: 11 ETLASLKSEAESLKGKLEEERAKLH-----DVELHQVAERVEALGQFVMKTRRTL----- 60
Query: 97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSP 155
GH + W D V+ S D V VWD+ T MP V A +P
Sbjct: 61 ---KGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP 116
Query: 156 LAASHMLIAAGTEDVQVRLCDIA------SGAISQTLSGHRDGIMTVEWSTSSEWILVTG 209
S IA G D + + + A ++++ H + + ++ S IL
Sbjct: 117 ---SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 210 GCDGAIRFWDIRRAGCFR----------VLDQSQSQLGRR--PPLLKRKSLSAGQNSSVK 257
G DG WD+ + LD + S+ G +K++ S
Sbjct: 174 G-DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232
Query: 258 PRAPQKRSANGNGVRQSSVGRIPAKGS--VRQRLHPGMLSSQDRATAHYG------AVTG 309
+A + ++ N VR G A GS RL+ DR A Y +
Sbjct: 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD---LRADREVAIYSKESIIFGASS 289
Query: 310 LKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF 343
+ + G L + +D I +WDV G + F
Sbjct: 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF 323
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 93/247 (37%), Gaps = 42/247 (17%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR-----TAMSP 155
GH ++ P + ++ S D + +W TR N+ +P + R +
Sbjct: 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMW--KLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 156 LAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI 215
+++ +G+ D +RL D+ +G ++ GH +++V +S+ + I V+G D I
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI-VSGSRDKTI 152
Query: 216 RFWDIRRAGCFRVLDQSQSQ----LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271
+ W+ + V D+S S+ + P +S G + VK N +
Sbjct: 153 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Query: 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331
H G + + V+ DG S G D + LW
Sbjct: 213 ------------------------------GHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Query: 332 DVESGRN 338
D+ G++
Sbjct: 243 DLNEGKH 249
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 113/287 (39%), Gaps = 48/287 (16%)
Query: 54 TEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP 113
++ ++ LSG+ D ++ ++D+ T R V GH + S +
Sbjct: 96 SDGQFALSGSWDGTLRLWDLTTGT--------TTRRFV---------GHTKDVLSVA-FS 137
Query: 114 VDTGLFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
D V+GS D +K+W+T C V + V SP +++ ++++ G + +
Sbjct: 138 SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL- 196
Query: 172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231
V++ ++A+ + GH + TV S + +GG DG WD+ LD
Sbjct: 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 232 SQ--SQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL 289
+ L P R L A S+K + G+I + L
Sbjct: 256 GDIINALCFSP---NRYWLCAATGPSIKIWDLE--------------GKI-----IVDEL 293
Query: 290 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336
++S+ +A T L + DG L + +D+ +R+W V G
Sbjct: 294 KQEVISTSSKAEPP--QCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 64/175 (36%), Gaps = 44/175 (25%)
Query: 286 RQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL----- 340
R + G+ R +H+ V+ + ++ DG + LS D +RLWD+ +G T
Sbjct: 70 RDETNYGIPQRALRGHSHF--VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 127
Query: 341 ------VNF-------------ETVRLQTSKPIQLATTQD------------------PA 363
V F +T++L + + T QD P
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187
Query: 364 VVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
+V VK +++ + K GH Y+N S +GG D Q ++W
Sbjct: 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 290 HPGMLS--SQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 347
HPG S SQ + K+ DG L+ G S + +WD+ + +
Sbjct: 81 HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI----KAE 136
Query: 348 LQTSKP--IQLATTQDPAVVFVPCMTA-VKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ 404
L +S P LA + D V F C + +D+ + F+GH + +C S+
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196
Query: 405 ELYTGGNDRQILVW 418
+L+TGG D + W
Sbjct: 197 KLWTGGLDNTVRSW 210
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 149 YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVT 208
Y A+SP + + D + + D+ + + + GH DG ++ S L T
Sbjct: 145 YALAISP---DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT-KLWT 200
Query: 209 GGCDGAIRFWDIRRA 223
GG D +R WD+R
Sbjct: 201 GGLDNTVRSWDLREG 215
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 302 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337
H + + ++ DG L + G D+ +R WD+ GR
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 40/259 (15%)
Query: 169 DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228
D +RL D+A+G Q GH+ +M+V+ + ++++G D I+ W I + C
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLAT 143
Query: 229 LDQSQSQLGRRPPLLKRKSLSAGQNSSV-KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ 287
L G N V + R A+ + V S G + +
Sbjct: 144 L--------------------LGHNDWVSQVRVVPNEKADDDSVTIISAGN----DKMVK 179
Query: 288 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 347
+ + H + L + DG + SAG D I LW++ + + T+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK----AMYTLS 235
Query: 348 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE--------YVNCCCF 399
Q + LA + + + T +K F + R + + +
Sbjct: 236 AQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294
Query: 400 SSQDQELYTGGNDRQILVW 418
S+ Q L+ G D I VW
Sbjct: 295 SADGQTLFAGYTDNVIRVW 313
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV-RLQTSKPIQLATTQD 361
H V +T DG Y LSA D +RLWDV +G ET R K ++ D
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-------ETYQRFVGHKSDVMSVDID 116
Query: 362 PAVVFVPCMTAVKAFDIWS--GKTCLTFRGHYEYVNCCCFSSQDQE------LYTGGNDR 413
+ + K +W+ G+ T GH ++V+ ++ + + GND+
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 414 QILVW 418
+ W
Sbjct: 177 MVKAW 181
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 40/259 (15%)
Query: 169 DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228
D +RL D+A+G Q GH+ +M+V+ + ++++G D I+ W I + C
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLAT 137
Query: 229 LDQSQSQLGRRPPLLKRKSLSAGQNSSV-KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ 287
L G N V + R A+ + V S G + +
Sbjct: 138 L--------------------LGHNDWVSQVRVVPNEKADDDSVTIISAGN----DKMVK 173
Query: 288 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 347
+ + H + L + DG + SAG D I LW++ + + T+
Sbjct: 174 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK----AMYTLS 229
Query: 348 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE--------YVNCCCF 399
Q + LA + + + T +K F + R + + +
Sbjct: 230 AQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 288
Query: 400 SSQDQELYTGGNDRQILVW 418
S+ Q L+ G D I VW
Sbjct: 289 SADGQTLFAGYTDNVIRVW 307
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV-RLQTSKPIQLATTQD 361
H V +T DG Y LSA D +RLWDV +G ET R K ++ D
Sbjct: 58 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-------ETYQRFVGHKSDVMSVDID 110
Query: 362 PAVVFVPCMTAVKAFDIWS--GKTCLTFRGHYEYVNCCCFSSQDQE------LYTGGNDR 413
+ + K +W+ G+ T GH ++V+ ++ + + GND+
Sbjct: 111 KKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 414 QILVW 418
+ W
Sbjct: 171 MVKAW 175
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 40/259 (15%)
Query: 169 DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228
D +RL D+A+G Q GH+ +M+V+ + ++++G D I+ W I + C
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLAT 143
Query: 229 LDQSQSQLGRRPPLLKRKSLSAGQNSSV-KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ 287
L G N V + R A+ + V S G + +
Sbjct: 144 L--------------------LGHNDWVSQVRVVPNEKADDDSVTIISAGN----DKMVK 179
Query: 288 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 347
+ + H + L + DG + SAG D I LW++ + + T+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK----AMYTLS 235
Query: 348 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE--------YVNCCCF 399
Q + LA + + + T +K F + R + + +
Sbjct: 236 AQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294
Query: 400 SSQDQELYTGGNDRQILVW 418
S+ Q L+ G D I VW
Sbjct: 295 SADGQTLFAGYTDNVIRVW 313
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV-RLQTSKPIQLATTQD 361
H V +T DG Y LSA D +RLWDV +G ET R K ++ D
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-------ETYQRFVGHKSDVMSVDID 116
Query: 362 PAVVFVPCMTAVKAFDIWS--GKTCLTFRGHYEYVNCCCFSSQDQE------LYTGGNDR 413
+ + K +W+ G+ T GH ++V+ ++ + + GND+
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 414 QILVW 418
+ W
Sbjct: 177 MVKAW 181
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDV 170
+ D+ TG++ V ++ + + GK + A SP +A+G D
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP---DGKYLASGAIDG 186
Query: 171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223
+ + DIA+G + TL GH I ++ +S S+ +LVT DG I+ +D++ A
Sbjct: 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHA 238
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 70/338 (20%), Positives = 130/338 (38%), Gaps = 57/338 (16%)
Query: 97 QHEHGHKYAISSAIW---YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAM 153
+ E H AI S W ++ VTGS D VKVW R+ + + + G
Sbjct: 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVS 85
Query: 154 SPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG 213
++ + + A+ + D +RL D+ +G +++ T+ +S S++ L TG G
Sbjct: 86 VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY-LATGTHVG 144
Query: 214 AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273
+ + G S K + R +
Sbjct: 145 KVNIF--------------------------------GVESGKKEYSLDTRGKFILSIAY 172
Query: 274 SSVGRIPAKGSVRQRLHPGMLSSQDRAT--------AHYGAVTGLKVTEDGMYLLSAGSD 325
S G+ A G++ G+++ D AT H + L + D L++A D
Sbjct: 173 SPDGKYLASGAI-----DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD 227
Query: 326 SRIRLWDVESGRNTLVNFETVRLQTSKPIQLA-TTQDPAVVFVPCMTAVKAFDIWSGKTC 384
I+++DV+ T+ S + +A D V +VK +D+ +TC
Sbjct: 228 GYIKIYDVQHANLA----GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV-GTRTC 282
Query: 385 L-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW-CP 420
+ TF H + V ++ ++ + G+D++I ++ CP
Sbjct: 283 VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 84/248 (33%), Gaps = 27/248 (10%)
Query: 180 GAISQTLSGHRDGIMTVEWSTS----SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ 235
G + + H D I +V W T+ SE +VTG D ++ W R Q
Sbjct: 22 GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQ 80
Query: 236 LG-------RRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQR 288
LG P+ SL A Q +S + V ++ P +
Sbjct: 81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATG 140
Query: 289 LHPGMLS--SQDRATAHYGA------VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 340
H G ++ + Y + + + DG YL S D I ++D+ +G+ L
Sbjct: 141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-LL 199
Query: 341 VNFETVRLQTSKPIQLATTQDPAVVFVPCMT--AVKAFDIWSGKTCLTFRGHYEYVNCCC 398
E + PI+ T + + V +K +D+ T GH +V
Sbjct: 200 HTLEGHAM----PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255
Query: 399 FSSQDQEL 406
F D
Sbjct: 256 FCPDDTHF 263
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 32 LSNYKEIVSPHKGSINSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRS 90
L N K+I S G +++ + + + +YL +G V ++ V+ +
Sbjct: 109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG------------KK 156
Query: 91 VFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGK 147
+ +D + K+ +S A Y D +G+ D + ++D +++ + MP
Sbjct: 157 EYSLDTRG----KFILSIA--YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP-- 208
Query: 148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196
+ SP S +L+ A ++D +++ D+ ++ TLSGH ++ V
Sbjct: 209 IRSLTFSP--DSQLLVTA-SDDGYIKIYDVQHANLAGTLSGHASWVLNV 254
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 40/259 (15%)
Query: 169 DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228
D +RL D+A+G Q GH+ +M+V+ + ++++G D I+ W I + C
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLAT 143
Query: 229 LDQSQSQLGRRPPLLKRKSLSAGQNSSV-KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ 287
L G N V + R A+ + V S G + +
Sbjct: 144 L--------------------LGHNDWVSQVRVVPNEKADDDSVTIISAGN----DKMVK 179
Query: 288 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 347
+ + H + L + DG + SAG D I LW++ + + T+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK----AMYTLS 235
Query: 348 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE--------YVNCCCF 399
Q + LA + + + T +K F + R + + +
Sbjct: 236 AQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294
Query: 400 SSQDQELYTGGNDRQILVW 418
S+ Q L+ G D I VW
Sbjct: 295 SADGQTLFAGYTDNVIRVW 313
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV-RLQTSKPIQLATTQD 361
H V +T DG Y LSA D +RLWDV +G ET R K ++ D
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-------ETYQRFVGHKSDVMSVDID 116
Query: 362 PAVVFVPCMTAVKAFDIWS--GKTCLTFRGHYEYVNCCCFSSQDQE------LYTGGNDR 413
+ + K +W+ G+ T GH ++V+ ++ + + GND+
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 414 QILVW 418
+ W
Sbjct: 177 MVKAW 181
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 40/259 (15%)
Query: 169 DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228
D +RL D+A+G Q GH+ +M+V+ + ++++G D I+ W I + C
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLAT 143
Query: 229 LDQSQSQLGRRPPLLKRKSLSAGQNSSV-KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ 287
L G N V + R A+ + V S G + +
Sbjct: 144 L--------------------LGHNDWVSQVRVVPNEKADDDSVTIISAGN----DKMVK 179
Query: 288 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 347
+ + H + L + DG + SAG D I LW++ + + T+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK----AMYTLS 235
Query: 348 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE--------YVNCCCF 399
Q + LA + + + T +K F + R + + +
Sbjct: 236 AQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAW 294
Query: 400 SSQDQELYTGGNDRQILVW 418
S+ Q L+ G D I VW
Sbjct: 295 SADGQTLFAGYTDNVIRVW 313
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV-RLQTSKPIQLATTQD 361
H V +T DG Y LSA D +RLWDV +G ET R K ++ D
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-------ETYQRFVGHKSDVMSVDID 116
Query: 362 PAVVFVPCMTAVKAFDIWS--GKTCLTFRGHYEYVNCCCFSSQDQE------LYTGGNDR 413
+ + K +W+ G+ T GH ++V+ ++ + + GND+
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 414 QILVW 418
+ W
Sbjct: 177 MVKAW 181
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 100/276 (36%), Gaps = 52/276 (18%)
Query: 107 SSAIWYPVDTGLF----VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHML 162
+ IW +D F VTGS D+ +K+WD + + V +K P V R SP +
Sbjct: 74 TGTIW-SIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLA 132
Query: 163 IA------AGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE---------WSTSSEWILV 207
I G+ ++ D A+ +++ I+T E WST ++I +
Sbjct: 133 ILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI-I 191
Query: 208 TGGCDGAIRFWDI----RRAGCFRVLDQSQSQLGRRPPL--------------------- 242
G DG I +D+ + ++S S + P L
Sbjct: 192 AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251
Query: 243 -LKRKSLSAGQNSSVKPRAPQKRSAN-GNGVRQSSVGRIPA-KGSVRQRLHPGMLSSQ-D 298
LK+ N++V P K G G V A +G R + + +
Sbjct: 252 VLKKYETDCPLNTAV--ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309
Query: 299 RATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 334
R H+G + + ++ G S G D IRL E
Sbjct: 310 RVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC 225
TL GH I +++ +++ VTG D +I+ WD+ C
Sbjct: 69 TLDGHTGTIWSIDVDCFTKY-CVTGSADYSIKLWDVSNGQC 108
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 162 LIAAGTEDVQVRLCDIASGAISQ-------TLSGHRDGIMTVEWSTSSEWILVTGGCDGA 214
+IA+G+ED V + +I G + TL GH + V W +++ +L++ G D
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNV 155
Query: 215 IRFWDI 220
I WD+
Sbjct: 156 ILVWDV 161
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 70/191 (36%), Gaps = 20/191 (10%)
Query: 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQ 97
+V H + + + + SG+ D +V V+++ +GG + V ++
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIP-----DGGLVLPLREPVITLE-- 128
Query: 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMS 154
GH + W+P + ++ D+ + VWD V+ P +Y S
Sbjct: 129 ---GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 155 PLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG---- 210
A LI D +VR+ + G + +G V SE ++T G
Sbjct: 186 RDGA---LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM 242
Query: 211 CDGAIRFWDIR 221
+ + WD +
Sbjct: 243 SERQVALWDTK 253
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 59/167 (35%), Gaps = 44/167 (26%)
Query: 296 SQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT---------------- 339
+Q R T H V + ++ DG + LS D +RLWD+ +G +T
Sbjct: 422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS 481
Query: 340 LVNFETVRLQTSKPIQL----------------------------ATTQDPAVVFVPCMT 371
L N + V + I+L T P +V
Sbjct: 482 LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK 541
Query: 372 AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
VK +++ + K T GH YV+ S +GG D +L+W
Sbjct: 542 TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 31/186 (16%)
Query: 176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQS 234
D A G + L+GH + V S+ ++ L +G DG +R WD+ R + ++
Sbjct: 416 DKAYGVAQRRLTGHSHFVEDVVLSSDGQFAL-SGSWDGELRLWDLAAGVSTRRFVGHTKD 474
Query: 235 QLGRRPPLLKRKSLSAGQNSSVK-----PRAPQKRSANGNGVRQ--SSVGRIPAKGSVRQ 287
L L R+ +SA ++ ++K S G G R S V P
Sbjct: 475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP------N 528
Query: 288 RLHPGMLSS--------------QDRAT--AHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331
L P ++S+ + R+T H G V+ + V+ DG S G D + LW
Sbjct: 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Query: 332 DVESGR 337
D+ G+
Sbjct: 589 DLAEGK 594
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 112 YPVDTGLFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAAS----HMLIAA 165
+ +D V+ S D +K+W+T C + G+ +R +S + S I +
Sbjct: 480 FSLDNRQIVSASRDRTIKLWNTLGECKYTISE---GGEGHRDWVSCVRFSPNTLQPTIVS 536
Query: 166 GTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
+ D V++ ++++ + TL+GH + TV S + +GG DG + WD+
Sbjct: 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDL 590
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 23/140 (16%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
GH +S+ P D L +G D V +WD + + + + ++ SP +
Sbjct: 559 GHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP---NR 614
Query: 161 MLIAAGTEDVQVRLCDIASGAISQTL-------------SGHRDGIMTVEWSTSSEW--- 204
+ A TE +++ D+ S +I + L SG V + TS W
Sbjct: 615 YWLCAATEH-GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673
Query: 205 --ILVTGGCDGAIRFWDIRR 222
L +G DG IR W I R
Sbjct: 674 GSTLFSGYTDGVIRVWGIGR 693
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 111/299 (37%), Gaps = 51/299 (17%)
Query: 133 TNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG 192
+ C+ + + ++ G + L+ + + + D +RL ++ +G GH
Sbjct: 52 SECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKD 111
Query: 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQ-----SQLGRRPPLLKRKS 247
+++V +S + I V+GG D A+R W+++ C L + S + P L
Sbjct: 112 VLSVAFSPDNRQI-VSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVI 169
Query: 248 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAV 307
+S G ++ VK V + GR+ H V
Sbjct: 170 VSGGWDNLVK-------------VWDLATGRLVTD-----------------LKGHTNYV 199
Query: 308 TGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI-QLATTQDPAVVF 366
T + V+ DG S+ D RLWD+ G + PI Q+ + + +
Sbjct: 200 TSVTVSPDGSLCASSDKDGVARLWDLTKGE------ALSEMAAGAPINQICFSPNRYWMC 253
Query: 367 VPCMTAVKAFDIWSGKTCLTF----RGHYEYVNCC---CFSSQDQELYTGGNDRQILVW 418
++ FD+ + + +G + V C +S+ LY+G D I VW
Sbjct: 254 AATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAA 158
GH + S + P D V+G D+ ++VW+ C + V SP
Sbjct: 107 GHTKDVLSVAFSP-DNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLD 165
Query: 159 SHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW 218
+ ++++ G +++ V++ D+A+G + L GH + + +V S + + DG R W
Sbjct: 166 APVIVSGGWDNL-VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS-LCASSDKDGVARLW 223
Query: 219 DIRR 222
D+ +
Sbjct: 224 DLTK 227
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173
+D + V+G +D+ VKVWD R+V + K G ++ L A+ +D R
Sbjct: 164 LDAPVIVSGGWDNLVKVWDLATGRLVTDLK--GHTNYVTSVTVSPDGSLCASSDKDGVAR 221
Query: 174 LCDIASG-AISQTLSG 188
L D+ G A+S+ +G
Sbjct: 222 LWDLTKGEALSEMAAG 237
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 90/259 (34%), Gaps = 40/259 (15%)
Query: 169 DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228
D +RL D+A+G Q GH+ + +V+ + +++G D I+ W I + C
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKAS-XIISGSRDKTIKVWTI-KGQCLAT 143
Query: 229 LDQSQSQLGRRPPLLKRKSLSAGQNSSV-KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ 287
L G N V + R A+ + V S G +
Sbjct: 144 L--------------------LGHNDWVSQVRVVPNEKADDDSVTIISAGN----DKXVK 179
Query: 288 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 347
+ + H + L + DG + SAG D I LW++ + + T+
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXY----TLS 235
Query: 348 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE--------YVNCCCF 399
Q + LA + + + T +K F + R + + +
Sbjct: 236 AQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294
Query: 400 SSQDQELYTGGNDRQILVW 418
S+ Q L+ G D I VW
Sbjct: 295 SADGQTLFAGYTDNVIRVW 313
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 16/125 (12%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV-RLQTSKPIQLATTQD 361
H V +T DG Y LSA D +RLWDV +G ET R K + D
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-------ETYQRFVGHKSDVXSVDID 116
Query: 362 PAVVFVPCMTAVKAFDIWS--GKTCLTFRGHYEYVNCCCFSSQDQE------LYTGGNDR 413
+ + K +W+ G+ T GH ++V+ ++ + + GND+
Sbjct: 117 KKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 414 QILVW 418
+ W
Sbjct: 177 XVKAW 181
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 28/153 (18%)
Query: 182 ISQTLSGHRDGIMTVEWSTS-SEW--ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR 238
++ L GH+ I ++ W+ S W ++ TG DG IR + I +
Sbjct: 206 VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE---------------K 250
Query: 239 RPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQD 298
PL +SL+ ++ A A G S K ++ L +LS D
Sbjct: 251 LSPLASEESLT--NSNXFDNSADVDXDAQGR-----SDSNTEEKAELQSNLQVELLSEHD 303
Query: 299 RATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331
H G V + G L SAG D ++RLW
Sbjct: 304 D---HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 34/156 (21%)
Query: 182 ISQTLSGHRDGIMTVEWSTS-SEW--ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR 238
++ L GH+ I ++ W+ S W ++ TG DG IR + I +
Sbjct: 204 VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE---------------K 248
Query: 239 RPPLLKRKSLSAGQ---NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLS 295
PL +SL+ NS+ Q RS + K ++ L +LS
Sbjct: 249 LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNT----------EEKAELQSNLQVELLS 298
Query: 296 SQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331
D H G V + G L SAG D ++RLW
Sbjct: 299 EHDD---HNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 45/204 (22%)
Query: 47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAI 106
N LQ D + S S +AV +++A Y+ G H + + GHK I
Sbjct: 163 NHLQSDFCLS-WCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP------GHKSLI 215
Query: 107 SSAIWYPVD---TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLI 163
S W P L TG D +++ FK+ K +SPLA+ L
Sbjct: 216 RSISWAPSIGRWYQLIATGCKDGRIRI-----------FKITEK-----LSPLASEESLT 259
Query: 164 AAGTEDVQVRL---------------CDIASGAISQTLSGHRD---GIMTVEWSTSSEWI 205
+ D + ++ S + LS H D + +V W+ + I
Sbjct: 260 NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGT-I 318
Query: 206 LVTGGCDGAIRFWDIRRAGCFRVL 229
L + G DG +R W + F+ +
Sbjct: 319 LSSAGDDGKVRLWKATYSNEFKCM 342
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 36/157 (22%)
Query: 182 ISQTLSGHRDGIMTVEWSTS-SEW--ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR 238
++ L GH+ I ++ W+ S W ++ TG DG IR + I +
Sbjct: 206 VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE---------------K 250
Query: 239 RPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR----IPAKGSVRQRLHPGML 294
PL +SL+ NS++ N V + GR K ++ L +L
Sbjct: 251 LSPLASEESLT---NSNM--------FDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL 299
Query: 295 SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331
S D H G V + G L SAG D ++RLW
Sbjct: 300 SEHDD---HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 45/204 (22%)
Query: 47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAI 106
N LQ D + S S +AV +++A Y+ G H + + GHK I
Sbjct: 165 NHLQSDFCLS-WCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP------GHKSLI 217
Query: 107 SSAIWYPVD---TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLI 163
S W P L TG D +++ FK+ K +SPLA+ L
Sbjct: 218 RSISWAPSIGRWYQLIATGCKDGRIRI-----------FKITEK-----LSPLASEESLT 261
Query: 164 AAGTEDVQVRL---------------CDIASGAISQTLSGHRD---GIMTVEWSTSSEWI 205
+ D + ++ S + LS H D + +V W+ + I
Sbjct: 262 NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGT-I 320
Query: 206 LVTGGCDGAIRFWDIRRAGCFRVL 229
L + G DG +R W + F+ +
Sbjct: 321 LSSAGDDGKVRLWKATYSNEFKCM 344
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 62/177 (35%), Gaps = 38/177 (21%)
Query: 163 IAAGTEDVQVRLCDIASG----AISQTLSGHRDGIMTVEWSTSSEWILVTGG--CDGAIR 216
+A+G D V + A G QT + H+ + V W +L TGG D IR
Sbjct: 245 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 304
Query: 217 FWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV--KPRAPQKRSANGNGVRQS 274
W++ C +D + Q S+ P + S +G Q
Sbjct: 305 IWNVCSGACLSAVD------------------AHSQVCSILWSPHYKELISGHGFAQNQL 346
Query: 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331
+ + P V + H V L ++ DG + SA +D +RLW
Sbjct: 347 VIWKYPTMAKVAE------------LKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 42/230 (18%)
Query: 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVR 173
+G + + D+ V +W + ++ +M PG+ Y ++++ + + L A GT +V+
Sbjct: 115 SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGE-YISSVAWIKEGNYL-AVGTSSAEVQ 172
Query: 174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG--CFRVLDQ 231
L D+ + ++ H + ++ W++ +IL +G G I D+R A +
Sbjct: 173 LWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGH 229
Query: 232 SQSQLGRRPPLLKRKSLSAGQNS--SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL 289
SQ G R R S G ++ +V P AP G G G +P +
Sbjct: 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP------GEG------GWVPLQ------- 270
Query: 290 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG---SDSRIRLWDVESG 336
T H GAV + +L+ G SD IR+W+V SG
Sbjct: 271 ---------TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 311
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 62/177 (35%), Gaps = 33/177 (18%)
Query: 53 LTEERYLLSGASDSSVAVYDVQRATDYEG-----------------------GGHIAKHR 89
+ E YL G S + V ++DVQ+ GHI H
Sbjct: 156 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI-HHH 214
Query: 90 SVFVVDKQHE--HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVW-----DTNCTRVVMNF 142
V V + GH + W P D +G D+ V VW + +
Sbjct: 215 DVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 273
Query: 143 KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ G V A P ++ + GT D +R+ ++ SGA + H + ++ WS
Sbjct: 274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWS 329
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 96/265 (36%), Gaps = 54/265 (20%)
Query: 169 DVQVRLCDIASGAISQTLSGHRDG--IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF 226
D V L +SG I Q L + G I +V W ++ V G ++ WD+++
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV-GTSSAEVQLWDVQQQKRL 182
Query: 227 RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVR 286
R + +++G S NS + + + + VR +
Sbjct: 183 RNMTSHSARVG-----------SLSWNSYILSSGSRSGHIHHHDVRVA------------ 219
Query: 287 QRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV 346
H LS H V GL+ DG +L S G+D+ + +W G V
Sbjct: 220 -EHHVATLS------GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP---- 268
Query: 347 RLQTSKPIQLATTQDPAVVFVPCMTAVKA---------FDIWS--GKTCLTFRGHYEYVN 395
LQT Q A AV + P + V A IW+ CL+ + V
Sbjct: 269 -LQTFTQHQGAVK---AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC 324
Query: 396 CCCFSSQDQELYTGGN--DRQILVW 418
+S +EL +G Q+++W
Sbjct: 325 SILWSPHYKELISGHGFAQNQLVIW 349
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 53/152 (34%), Gaps = 34/152 (22%)
Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGG--CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPP 241
QT + H+ + V W +L TGG D IR W++ C +D
Sbjct: 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----------- 238
Query: 242 LLKRKSLSAGQNSSV--KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDR 299
+ Q S+ P + S +G Q + + P V +
Sbjct: 239 -------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE------------ 279
Query: 300 ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331
H V L ++ DG + SA +D +RLW
Sbjct: 280 LKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 42/230 (18%)
Query: 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVR 173
+G + + D+ V +W + ++ +M PG+ Y ++++ + + L A GT +V+
Sbjct: 35 SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGE-YISSVAWIKEGNYL-AVGTSSAEVQ 92
Query: 174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA--GCFRVLDQ 231
L D+ + ++ H + ++ W++ +IL +G G I D+R A +
Sbjct: 93 LWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGH 149
Query: 232 SQSQLGRRPPLLKRKSLSAGQNS--SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL 289
SQ G R R S G ++ +V P AP G G G +P +
Sbjct: 150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP------GEG------GWVPLQ------- 190
Query: 290 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG---SDSRIRLWDVESG 336
T H GAV + +L+ G SD IR+W+V SG
Sbjct: 191 ---------TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 231
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 84/235 (35%), Gaps = 47/235 (20%)
Query: 9 EAGQIRPNSFANRV--KSHRLSTLQLSNYKEIVSPHKGSI-NSLQVD-----------LT 54
+A +IR + + N V S + + L N + S G I LQ++ +
Sbjct: 18 DAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK 77
Query: 55 EERYLLSGASDSSVAVYDVQRATDYEG-----------------------GGHIAKHRSV 91
E YL G S + V ++DVQ+ GHI H V
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI-HHHDV 136
Query: 92 FVVDKQHE--HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVW-----DTNCTRVVMNFKM 144
V + GH + W P D +G D+ V VW + + +
Sbjct: 137 RVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 195
Query: 145 PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
G V A P ++ + GT D +R+ ++ SGA + H + ++ WS
Sbjct: 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWS 249
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 98/271 (36%), Gaps = 54/271 (19%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDG--IMTVEWSTSSEWILVTGGCDGAIRFWDI 220
+ A D V L +SG I Q L + G I +V W ++ V G ++ WD+
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV-GTSSAEVQLWDV 96
Query: 221 RRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280
++ R + +++G S NS + + + + VR +
Sbjct: 97 QQQKRLRNMTSHSARVG-----------SLSWNSYILSSGSRSGHIHHHDVRVA------ 139
Query: 281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 340
H LS H V GL+ DG +L S G+D+ + +W G
Sbjct: 140 -------EHHVATLS------GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 186
Query: 341 VNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKA---------FDIWS--GKTCLTFRG 389
V +T Q ++ AV + P + V A IW+ CL+
Sbjct: 187 VPLQTFT-QHQGAVK-------AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 238
Query: 390 HYEYVNCCCFSSQDQELYTGGN--DRQILVW 418
+ V +S +EL +G Q+++W
Sbjct: 239 AHSQVCSILWSPHYKELISGHGFAQNQLVIW 269
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 62/177 (35%), Gaps = 38/177 (21%)
Query: 163 IAAGTEDVQVRLCDIASG----AISQTLSGHRDGIMTVEWSTSSEWILVTGG--CDGAIR 216
+A+G D V + A G QT + H+ + V W +L TGG D IR
Sbjct: 256 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 315
Query: 217 FWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV--KPRAPQKRSANGNGVRQS 274
W++ C +D + Q S+ P + S +G Q
Sbjct: 316 IWNVCSGACLSAVD------------------AHSQVCSILWSPHYKELISGHGFAQNQL 357
Query: 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331
+ + P V + H V L ++ DG + SA +D +RLW
Sbjct: 358 VIWKYPTMAKVAE------------LKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 42/230 (18%)
Query: 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVR 173
+G + + D+ V +W + ++ +M PG+ Y ++++ + + L A GT +V+
Sbjct: 126 SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGE-YISSVAWIKEGNYL-AVGTSSAEVQ 183
Query: 174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG--CFRVLDQ 231
L D+ + ++ H + ++ W++ +IL +G G I D+R A +
Sbjct: 184 LWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGH 240
Query: 232 SQSQLGRRPPLLKRKSLSAGQNS--SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL 289
SQ G R R S G ++ +V P AP G G G +P +
Sbjct: 241 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP------GEG------GWVPLQ------- 281
Query: 290 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG---SDSRIRLWDVESG 336
T H GAV + +L+ G SD IR+W+V SG
Sbjct: 282 ---------TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 322
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 63/177 (35%), Gaps = 33/177 (18%)
Query: 53 LTEERYLLSGASDSSVAVYDVQRATDYEG-----------------------GGHIAKHR 89
+ E YL G S + V ++DVQ+ GHI H
Sbjct: 167 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI-HHH 225
Query: 90 SVFVVDKQHE--HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR----VVMNF- 142
V V + GH + W P D +G D+ V VW + + F
Sbjct: 226 DVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT 284
Query: 143 KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
+ G V A P ++ + GT D +R+ ++ SGA + H + ++ WS
Sbjct: 285 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWS 340
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 96/265 (36%), Gaps = 54/265 (20%)
Query: 169 DVQVRLCDIASGAISQTLSGHRDG--IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF 226
D V L +SG I Q L + G I +V W ++ V G ++ WD+++
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV-GTSSAEVQLWDVQQQKRL 193
Query: 227 RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVR 286
R + +++G S NS + + + + VR +
Sbjct: 194 RNMTSHSARVG-----------SLSWNSYILSSGSRSGHIHHHDVRVA------------ 230
Query: 287 QRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV 346
H LS H V GL+ DG +L S G+D+ + +W G V
Sbjct: 231 -EHHVATLS------GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP---- 279
Query: 347 RLQTSKPIQLATTQDPAVVFVPCMTAVKA---------FDIWS--GKTCLTFRGHYEYVN 395
LQT Q A AV + P + V A IW+ CL+ + V
Sbjct: 280 -LQTFTQHQGAVK---AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC 335
Query: 396 CCCFSSQDQELYTGGN--DRQILVW 418
+S +EL +G Q+++W
Sbjct: 336 SILWSPHYKELISGHGFAQNQLVIW 360
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 162 LIAAGTEDVQVRLCDIA-SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
L+A G+ D + + + I + L+ H+DG+ + W T S LV+ G D I+ W++
Sbjct: 555 LVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPS--TLVSSGADACIKRWNV 612
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 95 DKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG-KVYRTAM 153
D++ G +A+S W +D+ F T D ++VWD ++ V + + ++ +
Sbjct: 248 DQEPVQGGIFALS---W--LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 302
Query: 154 SPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG 213
+A + I + + D + ++ + +T+SGH GI + + L++G DG
Sbjct: 303 GVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP-----LISGSYDG 357
Query: 214 AIRFW 218
I W
Sbjct: 358 RIXEW 362
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD----GIMTVEWSTSSEWILVTGGCDG 213
+ +I G+ D ++ D SG + + ++ GI + W S ++ V G D
Sbjct: 218 SGEFVITVGS-DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATV--GADA 274
Query: 214 AIRFWDIRRAGCFRVLDQSQSQLGRR 239
IR WD+ + C + + QLG +
Sbjct: 275 TIRVWDVTTSKCVQKWTLDKQQLGNQ 300
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 162 LIAAGTEDVQVRLCDIA-SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
L+A G+ D + + + I + L+ H+DG+ + W T S LV+ G D I+ W++
Sbjct: 555 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--TLVSSGADACIKRWNV 612
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 95 DKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG-KVYRTAM 153
D++ G +A+S W +D+ F T D ++VWD ++ V + + ++ +
Sbjct: 248 DQEPVQGGIFALS---W--LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 302
Query: 154 SPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG 213
+A + I + + D + ++ + +T+SGH GI + + L++G DG
Sbjct: 303 GVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP-----LISGSYDG 357
Query: 214 AIRFW 218
I W
Sbjct: 358 RIMEW 362
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR 239
GI + W S ++ V G D IR WD+ + C + + QLG +
Sbjct: 255 GIFALSWLDSQKFATV--GADATIRVWDVTTSKCVQKWTLDKQQLGNQ 300
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHML-----IAAGTEDVQVR 173
F+ G+ + +KV D+N F + ++ + +S + + + ++D+Q++
Sbjct: 109 FILGTTEGDIKVLDSN-------FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLK 161
Query: 174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
+ + G+ +TL GHR + + +L + DG IR W+
Sbjct: 162 IWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWE 206
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 302 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN 338
AH +T LK G L+S+ D ++++W V+ G N
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 302 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336
H VT + + + G +LSA D IRLW+ +G
Sbjct: 176 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 210
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 78/203 (38%), Gaps = 45/203 (22%)
Query: 42 HKGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH 100
H S+NS+Q E LL +SD V+V + + E G S ++D
Sbjct: 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK-----ENGT-----TSPIIID----- 142
Query: 101 GHKYAISSAIWYPV------------DTGLFVTGSYDHYVKVWDTN--CTRVVMNFKMPG 146
H ++SA W P ++ FVTG D+ VK+W N V+ + G
Sbjct: 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202
Query: 147 K---VYRTAMSPLAASHMLIAAGTEDVQVRLC-----DIASGAISQTLSGHR---DGIMT 195
V A SP +A+ ++D R C D G +TL D +
Sbjct: 203 HSDWVRDVAWSPTVLLRSYLASVSQD---RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 196 VEWSTSSEWILVTGGCDGAIRFW 218
WS S + ++GG D + W
Sbjct: 260 ASWSLSGNVLALSGG-DNKVTLW 281
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHML-----IAAGTEDVQVR 173
F+ G+ + +KV D+N F + ++ + +S + + + ++D+Q++
Sbjct: 112 FILGTTEGDIKVLDSN-------FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLK 164
Query: 174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
+ + G+ +TL GHR + + +L + DG IR W+
Sbjct: 165 IWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWE 209
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 302 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN 338
AH +T LK G L+S+ D ++++W V+ G N
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 302 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336
H VT + + + G +LSA D IRLW+ +G
Sbjct: 179 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 78/203 (38%), Gaps = 45/203 (22%)
Query: 42 HKGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH 100
H S+NS+Q E LL +SD V+V + + E G S ++D
Sbjct: 100 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK-----ENGT-----TSPIIID----- 144
Query: 101 GHKYAISSAIWYPV------------DTGLFVTGSYDHYVKVW--DTNCTRVVMNFKMPG 146
H ++SA W P ++ FVTG D+ VK+W +++ V+ + G
Sbjct: 145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 204
Query: 147 K---VYRTAMSPLAASHMLIAAGTEDVQVRLC-----DIASGAISQTLSGHR---DGIMT 195
V A SP +A+ ++D R C D G +TL D +
Sbjct: 205 HSDWVRDVAWSPTVLLRSYLASVSQD---RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 261
Query: 196 VEWSTSSEWILVTGGCDGAIRFW 218
WS S +L G D + W
Sbjct: 262 ASWSLSGN-VLALSGGDNKVTLW 283
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 32/201 (15%)
Query: 58 YLLSGASDSSVAVYDVQRATDYEG-GGHIAK---------------------HRSVFVVD 95
+L G + V +YDV+ T GH A+ H V + +
Sbjct: 148 FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN 207
Query: 96 KQ--HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYR 150
Q GH + W D +G D+ V++WD + + F V
Sbjct: 208 HQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSS--IPKFTKTNHNAAVKA 264
Query: 151 TAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG 210
A P ++ + GT D Q+ + A+GA T+ + ++ WS S+ I+ T G
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHG 323
Query: 211 C-DGAIRFWDIRRAGCFRVLD 230
D + W +G + +D
Sbjct: 324 FPDNNLSIWSYSSSGLTKQVD 344
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 32/180 (17%)
Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG--CDGAIRFW 218
+ +A+G D V++ D S T + H + V W +L TGG D I FW
Sbjct: 230 LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289
Query: 219 DIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV--KPRAPQKRSANGNGVRQSSV 276
+ +D + Q +S+ P + + S +G S+
Sbjct: 290 NAATGARVNTVD------------------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336
+ G +Q P AH V ++ DG L +A SD ++ W V G
Sbjct: 332 WSYSSSGLTKQVDIP----------AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 303 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 335
H V GL DG+ L S G+D+ +++WD S
Sbjct: 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHML 162
Y +S W+P + +FV G + V + DT T V++ + + V SP S
Sbjct: 215 YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP--HSVPF 272
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD 212
+A+ +ED + + D + + ++ HRD + WS + +L T G D
Sbjct: 273 LASLSEDCSLAVLDSSLSELFRS-QAHRDFVRDATWSPLNHSLLTTVGWD 321
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 80/212 (37%), Gaps = 45/212 (21%)
Query: 42 HKGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH 100
H S+NS+Q E LL +SD V+V + + E G S ++D
Sbjct: 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK-----ENGT-----TSPIIID----- 142
Query: 101 GHKYAISSAIWYPV------------DTGLFVTGSYDHYVKVW--DTNCTRVVMNFKMPG 146
H ++SA W P ++ FVTG D+ VK+W +++ V+ + G
Sbjct: 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202
Query: 147 K---VYRTAMSPLAASHMLIAAGTEDVQVRLC-----DIASGAISQTLSGHR---DGIMT 195
V A SP +A+ ++D R C D G +TL D +
Sbjct: 203 HSDWVRDVAWSPTVLLRSYLASVSQD---RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR 227
WS S +L G D + W G +
Sbjct: 260 ASWSLSGN-VLALSGGDNKVTLWKENLEGKWE 290
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 299 RATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 335
+ AH G+V GL + DG + SA +D I++W+V +
Sbjct: 234 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 74/196 (37%), Gaps = 24/196 (12%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW---D 219
I +G++D V + + T H + +V ++ TGG DG I + D
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG-DGTIVLYNGVD 221
Query: 220 IRRAGCF-----RVLDQSQSQLGR--RPPLLKRKSLSAGQNS---SVKPRAPQKRSANGN 269
+ G F + + S S G P K S SA + +V +K G
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 281
Query: 270 GVRQSSVG---------RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL 320
+ +G I A G + ++P + S H A+T L + DG L
Sbjct: 282 RIEDQQLGIIWTKQALVSISANGFI-NFVNPELGSIDQVRYGHNKAITALSSSADGKTLF 340
Query: 321 SAGSDSRIRLWDVESG 336
SA ++ I WD+ +G
Sbjct: 341 SADAEGHINSWDISTG 356
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 80/212 (37%), Gaps = 45/212 (21%)
Query: 42 HKGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH 100
H S+NS+Q E LL +SD V+V + + E G S ++D
Sbjct: 98 HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK-----ENGT-----TSPIIID----- 142
Query: 101 GHKYAISSAIWYPV------------DTGLFVTGSYDHYVKVW--DTNCTRVVMNFKMPG 146
H ++SA W P ++ FVTG D+ VK+W +++ V+ + G
Sbjct: 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202
Query: 147 K---VYRTAMSPLAASHMLIAAGTEDVQVRLC-----DIASGAISQTLSGHR---DGIMT 195
V A SP +A+ ++D R C D G +TL D +
Sbjct: 203 HSDWVRDVAWSPTVLLRSYMASVSQD---RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR 227
WS S +L G D + W G +
Sbjct: 260 ASWSLSGN-VLALSGGDNKVTLWKENLEGKWE 290
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 165 AGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
+G +D V++ D++ A+ ++ + H + V + I ++ G DG I WD R+
Sbjct: 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK 213
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 87 KHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVW 131
K+ ++D E HK AI S W P T L GS+D V +W
Sbjct: 42 KYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIW 85
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 60/183 (32%), Gaps = 64/183 (34%)
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVW-----DTNCTRVVMNFKMPGKVYRTAMSPL 156
H + IW+P + L + SYD V++W D C V+ + G V+ +
Sbjct: 152 HSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHE--GTVWSSDFDKT 208
Query: 157 AASHMLIAAGTEDVQVRL---------------CD-------------IASGAISQTLSG 188
L +G++D VR+ C+ +A G S
Sbjct: 209 EGVFRL-CSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASV 267
Query: 189 HRDGIMTVEWSTSSEW---------------------------ILVTGGCDGAIRFWDIR 221
DG++ V EW IL TGG DG + FW +
Sbjct: 268 GADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
Query: 222 RAG 224
+A
Sbjct: 328 KAA 330
>pdb|4EJR|A Chain A, Crystal Structure Of Major Capsid Protein S Domain From
Rabbit Hemorrhagic Disease Virus
pdb|4EJR|B Chain B, Crystal Structure Of Major Capsid Protein S Domain From
Rabbit Hemorrhagic Disease Virus
Length = 255
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 13 IRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDL 53
+RPN + + TL LS Y +++P GS N++QV +
Sbjct: 198 LRPNMYHPTGDPGLVPTLVLSVYNNLINPFGGSTNAIQVTV 238
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 319 LLSAGSDSRIRLWDVESGRNTL--VNFETVRLQTSKPIQLATTQDPAVVFVPCMT--AVK 374
L+A +D I+LW + T ++ + VR LA D F+ C +K
Sbjct: 158 FLTASADKTIKLWQNDKVIKTFSGIHNDVVR-------HLAVVDDGH--FISCSNDGLIK 208
Query: 375 AFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418
D +G T+ GH +V C + ++ + G DR + +W
Sbjct: 209 LVDXHTGDVLRTYEGHESFVYCIKLLP-NGDIVSCGEDRTVRIW 251
>pdb|3J1P|A Chain A, Atomic Model Of Rabbit Hemorrhagic Disease Virus
pdb|3J1P|B Chain B, Atomic Model Of Rabbit Hemorrhagic Disease Virus
pdb|3J1P|C Chain C, Atomic Model Of Rabbit Hemorrhagic Disease Virus
Length = 579
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 13 IRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDL 53
+RPN + + TL LS Y +++P GS N++QV +
Sbjct: 173 LRPNMYHPTGDPGLVPTLVLSVYNNLINPFGGSTNAIQVTV 213
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 79/212 (37%), Gaps = 45/212 (21%)
Query: 42 HKGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH 100
H S+NS+Q E LL +SD V+V + + E G S ++D
Sbjct: 98 HSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFK-----ENGT-----TSPIIID----- 142
Query: 101 GHKYAISSAIWYPV------------DTGLFVTGSYDHYVKVW--DTNCTRVVMNFKMPG 146
H ++SA W P ++ FVTG D+ VK+W +++ V+ + G
Sbjct: 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202
Query: 147 K---VYRTAMSPLAASHMLIAAGTEDVQVRLC-----DIASGAISQTLSGHR---DGIMT 195
V A SP A+ ++D R C D G +TL D +
Sbjct: 203 HSDWVRDVAWSPTVLLRSYXASVSQD---RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR 227
WS S +L G D + W G +
Sbjct: 260 ASWSLSGN-VLALSGGDNKVTLWKENLEGKWE 290
>pdb|1ZSP|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34
In Human Manganese Superoxide Dismutase
pdb|1ZSP|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34
In Human Manganese Superoxide Dismutase
Length = 198
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H ++N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAAVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 302 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG-RNTLVNFETVRLQTSKPI 354
AH V L + G L SAG D ++R WDV++ R T +N ++ + I
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 342
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
H +M++ ++ S E L + G DG +RFWD++
Sbjct: 289 AHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVK 321
>pdb|2P4K|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34
In Human Manganese Superoxide Dismutase
pdb|2P4K|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34
In Human Manganese Superoxide Dismutase
pdb|2P4K|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34
In Human Manganese Superoxide Dismutase
pdb|2P4K|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34
In Human Manganese Superoxide Dismutase
Length = 198
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H ++N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAANVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 302 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG-RNTLVNFETVRLQTSKPI 354
AH V L + G L SAG D ++R WDV++ R T +N ++ + I
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 352
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
H +M++ ++ S E L + G DG +RFWD++
Sbjct: 299 AHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVK 331
>pdb|2ADP|A Chain A, Nitrated Human Manganese Superoxide Dismutase
Length = 198
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAXVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 169 DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW-ILVTGGCDGAIRFWDIRRAGCFR 227
D ++ D++S Q ++ H + T+ W + + ++TG D ++FWD R +
Sbjct: 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM 165
Query: 228 VL 229
VL
Sbjct: 166 VL 167
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 120 VTGSYDHYVKVWDTNCTRVVMNFKMPGKVY 149
+TGS+D +K WDT + +M ++P + Y
Sbjct: 145 MTGSWDKTLKFWDTRSSNPMMVLQLPERCY 174
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 42/136 (30%)
Query: 97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL 156
+H GH AI+ ++P D L ++ S DH +++W+ +V
Sbjct: 145 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV----------------- 187
Query: 157 AASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIR 216
AI + GHRD +++ ++ E I+ + G D +++
Sbjct: 188 ------------------------AIFGGVEGHRDEVLSADYDLLGEKIM-SCGMDHSLK 222
Query: 217 FWDIRRAGCFRVLDQS 232
W I + +S
Sbjct: 223 LWRINSKRMMNAIKES 238
>pdb|1ZTE|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34
In Human Manganese Suerpoxide Dismutase
pdb|1ZTE|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34
In Human Manganese Suerpoxide Dismutase
pdb|1ZTE|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34
In Human Manganese Suerpoxide Dismutase
pdb|1ZTE|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34
In Human Manganese Suerpoxide Dismutase
Length = 198
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAHVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|1PM9|A Chain A, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
pdb|1PM9|B Chain B, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
Length = 198
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAYVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUW|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
Length = 198
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAYVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|1PL4|A Chain A, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|B Chain B, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|C Chain C, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|D Chain D, Crystal Structure Of Human Mnsod Y166f Mutant
Length = 198
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAYVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
pdb|1N0N|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
Length = 199
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 32 HAAYVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 78
>pdb|3C3S|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric
Interface Of Human Manganese Superoxide Dismutase
pdb|3C3S|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric
Interface Of Human Manganese Superoxide Dismutase
Length = 198
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAYVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|2GDS|A Chain A, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|B Chain B, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|C Chain C, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|D Chain D, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
Length = 198
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAYVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
pdb|1EM1|B Chain B, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
Length = 198
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAYVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n
pdb|1QNM|B Chain B, Human Manganese Superoxide Dismutase Mutant Q143n
Length = 198
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAYVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
pdb|1N0J|B Chain B, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
Length = 199
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 32 HAAYVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 78
>pdb|3C3T|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric
Interface Of Human Manganese Superoxide Dismutase
pdb|3C3T|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric
Interface Of Human Manganese Superoxide Dismutase
Length = 198
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAYVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|1MSD|A Chain A, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1MSD|B Chain B, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUV|B Chain B, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|2ADQ|B Chain B, Human Manganese Superoxide Dismutase
Length = 198
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAYVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human
Manganese Superoxide Dismutase
pdb|1JA8|B Chain B, Kinetic Analysis Of Product Inhibition In Human
Manganese Superoxide Dismutase
Length = 198
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAYVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
Length = 198
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAFVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|1ZUQ|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34
In Human Manganese Superoxide Dismutase
pdb|1ZUQ|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34
In Human Manganese Superoxide Dismutase
Length = 198
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAVVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNF 142
+H GH AI+ ++P D L ++ S DH +++W+ +V F
Sbjct: 104 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 149
>pdb|1SZX|A Chain A, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
pdb|1SZX|B Chain B, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
Length = 198
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAFVNNLNV--TEEKYQEALAKGDVTAQIALQPALKFNGGGHI--NHSIF 77
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNF 142
+H GH AI+ ++P D L ++ S DH +++W+ +V F
Sbjct: 109 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 154
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNF 142
+H GH AI+ ++P D L ++ S DH +++W+ +V F
Sbjct: 108 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNF 142
+H GH AI+ ++P D L ++ S DH +++W+ +V F
Sbjct: 108 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant
With Ile 58 Replaced By Thr
pdb|1VAR|B Chain B, Mitochondrial Manganese Superoxide Dismutase Variant
With Ile 58 Replaced By Thr
Length = 198
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A + GGGHI + S+F
Sbjct: 31 HAAYVNNLNV--TEEKYQEALAKGDVTAQTALQPALKFNGGGHI--NHSIF 77
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 156 LAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI 215
++AS ++ G V L ++ G L H+ + V + +W L T D +
Sbjct: 217 VSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTV 275
Query: 216 RFWDIRR 222
+ WD+R+
Sbjct: 276 KIWDLRQ 282
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 156 LAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI 215
++AS ++ G V L ++ G L H+ + V + +W L T D +
Sbjct: 217 VSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTV 275
Query: 216 RFWDIRR 222
+ WD+R+
Sbjct: 276 KIWDLRQ 282
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
H+ + E++ +W++ T D ++ WD+R
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 234
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 156 LAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI 215
++AS ++ G V L ++ G L H+ + V + +W L T D +
Sbjct: 218 VSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTV 276
Query: 216 RFWDIRR 222
+ WD+R+
Sbjct: 277 KIWDLRQ 283
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
H+ + E++ +W++ T D ++ WD+R
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 38/210 (18%)
Query: 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHE 99
+ H+ I+ Q+D R L + +SD SV ++DV+ GG I + D +
Sbjct: 10 TSHEDMIHDAQMDYYGTR-LATCSSDRSVKIFDVRN------GGQI------LIADLRGH 56
Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAAS 159
G + ++ A +P+ + + SYD V +W + + G + S A
Sbjct: 57 EGPVWQVAWA--HPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGH-DSSVNSVCWAP 113
Query: 160 H---MLIAAGTEDVQVRLCDIASGA---ISQTLSGHRDGIMTVEWSTS------------ 201
H +++A G+ D + L + + + H G V W+ +
Sbjct: 114 HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSG 173
Query: 202 --SEWI--LVTGGCDGAIRFWDIRRAGCFR 227
+I +GGCD I+ W G ++
Sbjct: 174 QKPNYIKRFASGGCDNLIKLWKEEEDGQWK 203
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223
+L+G R + V+ + + ++ TGG DG + WD+R+
Sbjct: 231 SLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQG 269
>pdb|2QKC|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKC|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
H +N+L V TEE+Y + A A +Q A GGGHI + S+F
Sbjct: 31 HAAYVNNLNV--TEEKYQEALAKGDVTAQIALQPALKLNGGGHI--NHSIF 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,429,336
Number of Sequences: 62578
Number of extensions: 530552
Number of successful extensions: 2169
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1158
Number of HSP's gapped (non-prelim): 693
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)