Query 013545
Match_columns 441
No_of_seqs 190 out of 2421
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:56:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4283 Transcription-coupled 100.0 8.4E-51 1.8E-55 347.9 29.0 360 1-420 1-364 (397)
2 KOG0271 Notchless-like WD40 re 100.0 1.7E-47 3.7E-52 338.0 27.7 356 38-419 110-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 5.7E-45 1.2E-49 326.0 22.3 283 41-420 173-459 (459)
4 KOG0286 G-protein beta subunit 100.0 1.9E-42 4.1E-47 296.5 32.8 288 35-419 47-343 (343)
5 KOG0279 G protein beta subunit 100.0 2.6E-39 5.6E-44 275.6 30.0 295 35-421 7-313 (315)
6 KOG0271 Notchless-like WD40 re 100.0 5.9E-38 1.3E-42 277.7 21.2 294 98-429 110-447 (480)
7 KOG0265 U5 snRNP-specific prot 100.0 8.1E-37 1.8E-41 262.9 27.3 290 35-417 39-334 (338)
8 KOG0318 WD40 repeat stress pro 100.0 1.5E-35 3.3E-40 272.2 32.4 366 35-424 182-563 (603)
9 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-36 4.1E-41 271.4 21.3 255 101-433 173-430 (459)
10 KOG0263 Transcription initiati 100.0 1.2E-36 2.7E-41 292.3 21.5 261 44-426 379-654 (707)
11 KOG0315 G-protein beta subunit 100.0 4.6E-35 1E-39 245.8 27.8 283 56-433 10-300 (311)
12 KOG0296 Angio-associated migra 100.0 2.3E-34 4.9E-39 253.8 30.0 335 38-421 59-398 (399)
13 KOG0282 mRNA splicing factor [ 100.0 2.4E-35 5.1E-40 268.7 20.2 297 32-419 203-503 (503)
14 KOG0285 Pleiotropic regulator 100.0 1.6E-34 3.5E-39 253.9 24.6 290 35-424 143-442 (460)
15 KOG0315 G-protein beta subunit 100.0 1.2E-34 2.5E-39 243.4 22.4 227 117-423 11-247 (311)
16 KOG0268 Sof1-like rRNA process 100.0 6.4E-36 1.4E-40 263.2 13.3 323 14-441 37-365 (433)
17 KOG0291 WD40-repeat-containing 100.0 6.6E-33 1.4E-37 264.6 33.5 307 36-423 182-510 (893)
18 KOG0643 Translation initiation 100.0 6.7E-34 1.5E-38 241.1 23.4 288 38-423 5-319 (327)
19 KOG0284 Polyadenylation factor 100.0 7.7E-35 1.7E-39 260.0 17.7 280 44-421 97-380 (464)
20 KOG0291 WD40-repeat-containing 100.0 1.9E-33 4.1E-38 268.2 26.8 274 35-425 342-616 (893)
21 KOG0279 G protein beta subunit 100.0 3E-33 6.5E-38 238.6 25.0 250 36-379 56-313 (315)
22 KOG0295 WD40 repeat-containing 100.0 1.6E-33 3.5E-38 248.3 23.5 284 38-419 103-404 (406)
23 cd00200 WD40 WD40 domain, foun 100.0 4.9E-32 1.1E-36 250.0 34.7 283 39-419 5-289 (289)
24 KOG0273 Beta-transducin family 100.0 1.7E-32 3.7E-37 249.1 29.6 277 43-420 235-522 (524)
25 KOG0273 Beta-transducin family 100.0 6.7E-33 1.5E-37 251.8 27.0 308 37-430 173-491 (524)
26 KOG0266 WD40 repeat-containing 100.0 2.7E-32 5.9E-37 268.1 32.3 286 42-421 158-454 (456)
27 KOG0293 WD40 repeat-containing 100.0 3.9E-33 8.5E-38 249.3 21.9 293 36-423 217-515 (519)
28 KOG0263 Transcription initiati 100.0 3.2E-33 6.9E-38 268.9 22.9 208 35-336 443-651 (707)
29 KOG0285 Pleiotropic regulator 100.0 6.6E-33 1.4E-37 243.8 22.3 250 99-429 147-397 (460)
30 PLN00181 protein SPA1-RELATED; 100.0 5.1E-31 1.1E-35 277.5 39.3 295 40-420 480-792 (793)
31 KOG0278 Serine/threonine kinas 100.0 2.8E-33 6.1E-38 235.1 17.1 288 39-426 10-302 (334)
32 KOG0645 WD40 repeat protein [G 100.0 9.8E-31 2.1E-35 222.4 30.9 288 37-421 8-311 (312)
33 KOG0281 Beta-TrCP (transducin 100.0 1.2E-33 2.6E-38 247.6 13.4 234 43-427 197-434 (499)
34 KOG0318 WD40 repeat stress pro 100.0 1.6E-30 3.5E-35 239.2 31.4 299 35-428 51-357 (603)
35 KOG0319 WD40-repeat-containing 100.0 1.3E-31 2.9E-36 255.4 25.2 284 40-420 320-618 (775)
36 KOG0281 Beta-TrCP (transducin 100.0 4.6E-33 9.9E-38 243.9 13.3 254 37-432 231-488 (499)
37 KOG0286 G-protein beta subunit 100.0 3E-30 6.5E-35 221.6 28.7 255 97-432 49-314 (343)
38 KOG0319 WD40-repeat-containing 100.0 6.9E-31 1.5E-35 250.5 27.2 359 24-424 128-580 (775)
39 KOG0277 Peroxisomal targeting 100.0 1.5E-31 3.2E-36 225.4 19.1 246 43-420 60-308 (311)
40 KOG0306 WD40-repeat-containing 100.0 4E-30 8.8E-35 245.5 29.3 325 38-421 102-580 (888)
41 KOG0640 mRNA cleavage stimulat 100.0 5.2E-31 1.1E-35 227.9 20.5 300 38-419 107-424 (430)
42 KOG0313 Microtubule binding pr 100.0 1.4E-30 3.1E-35 230.9 23.7 279 42-420 104-417 (423)
43 KOG0316 Conserved WD40 repeat- 100.0 6.6E-30 1.4E-34 213.2 24.7 283 37-420 11-298 (307)
44 KOG0295 WD40 repeat-containing 100.0 8.1E-31 1.8E-35 231.3 20.3 249 100-424 105-367 (406)
45 KOG0266 WD40 repeat-containing 100.0 1.1E-29 2.3E-34 249.8 28.7 253 102-432 158-420 (456)
46 KOG0292 Vesicle coat complex C 100.0 1.1E-29 2.3E-34 246.3 26.0 321 43-431 9-331 (1202)
47 KOG0275 Conserved WD40 repeat- 100.0 6.3E-31 1.4E-35 228.6 15.8 298 37-420 207-508 (508)
48 KOG0316 Conserved WD40 repeat- 100.0 6.6E-30 1.4E-34 213.2 21.1 241 100-424 14-260 (307)
49 KOG0306 WD40-repeat-containing 100.0 2.3E-29 4.9E-34 240.4 25.6 338 45-422 322-665 (888)
50 KOG0276 Vesicle coat complex C 100.0 1E-29 2.2E-34 238.2 22.3 254 37-428 7-264 (794)
51 KOG0274 Cdc4 and related F-box 100.0 7E-29 1.5E-33 243.6 28.3 282 39-428 203-489 (537)
52 KOG0283 WD40 repeat-containing 100.0 7.5E-29 1.6E-33 240.8 25.7 271 40-425 264-580 (712)
53 KOG0264 Nucleosome remodeling 100.0 9.4E-29 2E-33 224.4 23.5 275 40-424 121-407 (422)
54 KOG0284 Polyadenylation factor 100.0 3.8E-30 8.3E-35 230.0 13.5 248 34-334 129-380 (464)
55 PLN00181 protein SPA1-RELATED; 100.0 1.6E-27 3.5E-32 251.0 33.8 246 99-423 479-740 (793)
56 KOG0292 Vesicle coat complex C 100.0 1.4E-28 2.9E-33 238.7 21.3 247 104-426 10-285 (1202)
57 KOG1446 Histone H3 (Lys4) meth 100.0 3.5E-27 7.5E-32 205.5 27.3 254 102-435 13-277 (311)
58 KOG2096 WD40 repeat protein [G 100.0 1.4E-27 3E-32 207.5 24.2 303 38-424 81-406 (420)
59 KOG0265 U5 snRNP-specific prot 100.0 1.7E-27 3.7E-32 205.5 23.1 255 99-433 43-308 (338)
60 KOG0300 WD40 repeat-containing 100.0 1.2E-27 2.6E-32 207.7 21.4 291 38-425 143-480 (481)
61 KOG1407 WD40 repeat protein [F 100.0 1.5E-26 3.3E-31 195.9 27.4 288 37-421 14-311 (313)
62 KOG0645 WD40 repeat protein [G 100.0 1.6E-26 3.5E-31 196.8 24.6 208 98-419 9-223 (312)
63 KOG0282 mRNA splicing factor [ 100.0 3.7E-28 8.1E-33 221.8 15.2 255 99-431 210-472 (503)
64 KOG1408 WD40 repeat protein [F 100.0 5.2E-27 1.1E-31 223.0 23.1 312 41-421 367-713 (1080)
65 PTZ00421 coronin; Provisional 100.0 4.7E-26 1E-30 223.4 30.8 263 42-426 19-295 (493)
66 KOG0276 Vesicle coat complex C 100.0 1.9E-26 4E-31 216.4 25.9 202 44-337 56-260 (794)
67 cd00200 WD40 WD40 domain, foun 100.0 1.1E-25 2.4E-30 207.5 31.0 248 99-426 5-254 (289)
68 KOG1446 Histone H3 (Lys4) meth 100.0 3.5E-25 7.5E-30 193.0 31.9 292 38-425 9-307 (311)
69 KOG0289 mRNA splicing factor [ 100.0 3.9E-26 8.6E-31 205.9 26.8 278 44-420 220-505 (506)
70 KOG0274 Cdc4 and related F-box 100.0 1E-26 2.3E-31 228.3 25.2 272 39-418 245-519 (537)
71 PTZ00421 coronin; Provisional 100.0 1.6E-25 3.5E-30 219.6 32.4 218 38-338 70-294 (493)
72 KOG0288 WD40 repeat protein Ti 100.0 3.1E-27 6.8E-32 211.8 17.8 284 39-419 171-459 (459)
73 KOG0299 U3 snoRNP-associated p 100.0 4.6E-26 9.9E-31 207.1 25.3 290 37-409 136-443 (479)
74 PTZ00420 coronin; Provisional 100.0 1.6E-25 3.5E-30 220.6 30.5 173 37-222 68-249 (568)
75 KOG0308 Conserved WD40 repeat- 99.9 1.4E-26 2.9E-31 218.4 19.2 260 41-431 19-295 (735)
76 KOG0310 Conserved WD40 repeat- 99.9 9.7E-26 2.1E-30 206.4 24.1 278 44-418 27-306 (487)
77 KOG0305 Anaphase promoting com 99.9 3.5E-25 7.7E-30 210.0 28.7 273 49-424 183-464 (484)
78 KOG0277 Peroxisomal targeting 99.9 3.9E-26 8.4E-31 192.8 19.5 247 46-424 11-268 (311)
79 KOG0641 WD40 repeat protein [G 99.9 1.5E-23 3.3E-28 174.3 34.0 305 42-421 31-349 (350)
80 KOG0313 Microtubule binding pr 99.9 1.1E-25 2.5E-30 199.9 22.4 274 101-431 103-387 (423)
81 KOG1539 WD repeat protein [Gen 99.9 3.8E-25 8.3E-30 214.0 27.7 351 45-425 161-610 (910)
82 KOG1332 Vesicle coat complex C 99.9 4.3E-26 9.4E-31 191.5 17.4 259 37-422 5-287 (299)
83 PTZ00420 coronin; Provisional 99.9 7.5E-25 1.6E-29 215.9 29.0 230 61-424 49-296 (568)
84 KOG0310 Conserved WD40 repeat- 99.9 2.1E-25 4.5E-30 204.2 20.8 241 104-424 27-271 (487)
85 KOG0275 Conserved WD40 repeat- 99.9 5.8E-26 1.3E-30 197.8 15.0 250 101-429 211-475 (508)
86 KOG0772 Uncharacterized conser 99.9 1.5E-24 3.2E-29 199.6 24.8 303 38-426 162-493 (641)
87 KOG0973 Histone transcription 99.9 9.2E-25 2E-29 217.6 24.7 303 40-425 9-359 (942)
88 KOG0294 WD40 repeat-containing 99.9 4.3E-24 9.4E-29 185.7 25.0 241 99-423 39-283 (362)
89 KOG0643 Translation initiation 99.9 1.2E-24 2.6E-29 185.0 19.7 254 38-334 47-317 (327)
90 KOG0301 Phospholipase A2-activ 99.9 5.4E-24 1.2E-28 202.4 25.1 280 36-422 7-289 (745)
91 KOG2445 Nuclear pore complex c 99.9 8.9E-24 1.9E-28 183.2 24.2 277 36-421 6-318 (361)
92 KOG0278 Serine/threonine kinas 99.9 6.6E-25 1.4E-29 184.9 16.3 203 41-337 98-300 (334)
93 KOG0288 WD40 repeat protein Ti 99.9 1.3E-24 2.8E-29 195.1 17.9 244 36-376 212-458 (459)
94 KOG0296 Angio-associated migra 99.9 2.9E-23 6.4E-28 183.8 25.6 256 98-431 59-366 (399)
95 KOG0264 Nucleosome remodeling 99.9 1.6E-24 3.4E-29 197.1 18.0 228 38-334 172-404 (422)
96 KOG0647 mRNA export protein (c 99.9 1.2E-22 2.5E-27 175.8 26.8 286 37-412 21-315 (347)
97 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.4E-22 7.4E-27 187.0 32.4 273 57-425 2-283 (300)
98 KOG0647 mRNA export protein (c 99.9 2E-23 4.4E-28 180.6 21.7 243 101-423 25-283 (347)
99 KOG0646 WD40 repeat protein [G 99.9 2.1E-23 4.6E-28 190.2 22.8 283 58-430 9-316 (476)
100 KOG4328 WD40 protein [Function 99.9 3.2E-23 7E-28 188.5 23.1 301 38-421 181-495 (498)
101 KOG0308 Conserved WD40 repeat- 99.9 3.8E-24 8.3E-29 202.0 17.8 207 39-336 69-287 (735)
102 KOG0301 Phospholipase A2-activ 99.9 1.3E-23 2.7E-28 199.9 20.3 236 99-421 10-249 (745)
103 KOG0639 Transducin-like enhanc 99.9 6E-23 1.3E-27 188.5 20.5 282 41-419 417-702 (705)
104 KOG1063 RNA polymerase II elon 99.9 1.8E-22 3.9E-27 192.0 24.2 321 38-421 49-391 (764)
105 KOG0299 U3 snoRNP-associated p 99.9 2.2E-22 4.7E-27 183.2 23.1 247 40-371 199-446 (479)
106 KOG1036 Mitotic spindle checkp 99.9 3.6E-22 7.7E-27 173.5 23.2 242 101-426 11-267 (323)
107 KOG0289 mRNA splicing factor [ 99.9 5.3E-22 1.1E-26 179.4 24.3 205 38-335 256-463 (506)
108 KOG0269 WD40 repeat-containing 99.9 1E-22 2.2E-27 196.0 20.6 291 44-421 40-340 (839)
109 KOG0293 WD40 repeat-containing 99.9 1.4E-22 3.1E-27 181.9 19.8 254 98-432 219-481 (519)
110 KOG1274 WD40 repeat protein [G 99.9 1.3E-21 2.8E-26 191.8 27.4 251 41-424 11-265 (933)
111 KOG0973 Histone transcription 99.9 1.7E-22 3.7E-27 201.6 21.8 246 104-426 14-317 (942)
112 KOG0305 Anaphase promoting com 99.9 6.1E-22 1.3E-26 188.1 24.5 240 42-381 216-463 (484)
113 KOG1407 WD40 repeat protein [F 99.9 2.7E-21 5.9E-26 164.2 23.8 234 38-370 59-292 (313)
114 KOG0321 WD40 repeat-containing 99.9 1.2E-21 2.6E-26 184.8 23.4 310 42-426 46-396 (720)
115 KOG0772 Uncharacterized conser 99.9 2.7E-22 5.8E-27 184.8 18.3 252 99-421 163-445 (641)
116 KOG2106 Uncharacterized conser 99.9 8.1E-21 1.7E-25 174.8 27.8 300 41-420 285-625 (626)
117 KOG1063 RNA polymerase II elon 99.9 7.4E-21 1.6E-25 181.1 27.5 378 38-424 186-651 (764)
118 KOG0283 WD40 repeat-containing 99.9 7.6E-22 1.6E-26 192.3 20.4 204 38-334 364-576 (712)
119 KOG0267 Microtubule severing p 99.9 3E-23 6.4E-28 198.1 10.3 254 57-413 5-260 (825)
120 KOG0270 WD40 repeat-containing 99.9 1E-21 2.2E-26 178.2 19.4 254 56-425 192-453 (463)
121 KOG4283 Transcription-coupled 99.9 1.7E-21 3.6E-26 168.2 18.9 232 101-436 41-291 (397)
122 KOG0302 Ribosome Assembly prot 99.9 1.4E-21 3.1E-26 173.8 18.7 212 101-425 149-382 (440)
123 KOG0294 WD40 repeat-containing 99.9 4.1E-21 8.8E-26 167.3 20.3 239 39-336 39-283 (362)
124 KOG2055 WD40 repeat protein [G 99.9 7.4E-21 1.6E-25 173.3 22.8 287 43-421 213-512 (514)
125 KOG1036 Mitotic spindle checkp 99.9 5.2E-20 1.1E-24 160.1 26.8 275 40-411 10-294 (323)
126 KOG0641 WD40 repeat protein [G 99.9 1.9E-20 4.1E-25 155.9 22.5 220 41-334 87-349 (350)
127 KOG0640 mRNA cleavage stimulat 99.9 1.2E-21 2.7E-26 170.0 15.9 215 100-431 109-347 (430)
128 KOG2106 Uncharacterized conser 99.9 1.5E-19 3.3E-24 166.5 30.3 330 39-432 150-488 (626)
129 KOG0300 WD40 repeat-containing 99.9 1E-20 2.3E-25 164.7 19.4 250 99-429 144-436 (481)
130 KOG4227 WD40 repeat protein [G 99.9 2.7E-20 5.9E-25 166.4 21.9 339 38-434 51-398 (609)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.5E-19 1.6E-23 164.4 32.9 268 39-401 27-300 (300)
132 KOG1273 WD40 repeat protein [G 99.9 5.4E-20 1.2E-24 160.3 22.7 282 46-421 26-322 (405)
133 KOG0267 Microtubule severing p 99.9 8.3E-22 1.8E-26 188.3 10.0 238 39-374 24-262 (825)
134 KOG0302 Ribosome Assembly prot 99.9 9.4E-21 2E-25 168.6 15.7 172 34-222 200-379 (440)
135 KOG0270 WD40 repeat-containing 99.9 1.5E-20 3.3E-25 170.6 17.1 164 39-221 239-404 (463)
136 KOG2048 WD40 repeat protein [G 99.9 9.3E-19 2E-23 166.7 29.3 283 43-418 25-316 (691)
137 KOG2096 WD40 repeat protein [G 99.9 5.6E-20 1.2E-24 160.4 19.1 219 98-422 81-309 (420)
138 KOG0650 WD40 repeat nucleolar 99.9 3.3E-19 7.2E-24 167.4 24.4 285 36-419 393-733 (733)
139 KOG0268 Sof1-like rRNA process 99.8 1.4E-20 2.9E-25 166.8 14.2 250 99-435 62-317 (433)
140 KOG1408 WD40 repeat protein [F 99.8 2.7E-19 5.8E-24 171.0 23.7 291 46-424 327-674 (1080)
141 KOG0269 WD40 repeat-containing 99.8 4.3E-20 9.4E-25 178.0 16.8 161 45-222 89-251 (839)
142 KOG0639 Transducin-like enhanc 99.8 6.3E-20 1.4E-24 168.8 16.2 242 101-425 417-667 (705)
143 KOG1332 Vesicle coat complex C 99.8 2.5E-19 5.5E-24 150.9 17.4 216 36-334 49-286 (299)
144 KOG4378 Nuclear protein COP1 [ 99.8 1.6E-19 3.5E-24 165.9 17.0 197 45-337 84-283 (673)
145 KOG0321 WD40 repeat-containing 99.8 2.6E-19 5.6E-24 169.3 18.4 293 40-422 97-446 (720)
146 KOG1539 WD repeat protein [Gen 99.8 3.2E-19 7E-24 173.3 19.6 197 44-332 449-646 (910)
147 KOG0322 G-protein beta subunit 99.8 1.1E-18 2.4E-23 148.6 19.4 299 38-420 9-322 (323)
148 KOG1034 Transcriptional repres 99.8 1.3E-17 2.7E-22 146.4 24.2 168 98-334 33-211 (385)
149 KOG1007 WD repeat protein TSSC 99.8 3.7E-18 8.1E-23 147.2 19.3 289 36-422 56-362 (370)
150 KOG2048 WD40 repeat protein [G 99.8 2E-17 4.4E-22 157.7 25.8 246 104-426 26-280 (691)
151 KOG1188 WD40 repeat protein [G 99.8 3.1E-18 6.8E-23 151.0 17.9 275 57-420 41-345 (376)
152 KOG0646 WD40 repeat protein [G 99.8 1.3E-17 2.8E-22 152.6 21.1 240 43-408 81-336 (476)
153 KOG0307 Vesicle coat complex C 99.8 1.1E-18 2.4E-23 175.4 14.8 255 44-426 65-332 (1049)
154 KOG0642 Cell-cycle nuclear pro 99.8 1.6E-18 3.4E-23 162.0 14.3 267 38-423 289-563 (577)
155 KOG1517 Guanine nucleotide bin 99.8 2.2E-17 4.8E-22 164.2 22.3 264 43-426 1109-1386(1387)
156 KOG2919 Guanine nucleotide-bin 99.8 1.5E-16 3.3E-21 139.4 24.3 293 46-423 52-369 (406)
157 KOG1009 Chromatin assembly com 99.8 1.4E-16 3.1E-21 143.5 23.7 322 44-426 14-377 (434)
158 COG2319 FOG: WD40 repeat [Gene 99.8 4.8E-15 1E-19 144.1 35.7 292 38-424 60-362 (466)
159 PRK11028 6-phosphogluconolacto 99.8 2.6E-15 5.6E-20 142.7 30.8 280 58-421 4-304 (330)
160 KOG0307 Vesicle coat complex C 99.8 5.1E-18 1.1E-22 170.7 12.5 212 40-337 113-330 (1049)
161 KOG0644 Uncharacterized conser 99.8 1.6E-18 3.4E-23 168.4 8.5 237 100-424 187-429 (1113)
162 KOG1445 Tumor-specific antigen 99.8 6.7E-16 1.4E-20 146.2 25.7 168 38-222 74-249 (1012)
163 KOG0303 Actin-binding protein 99.7 8.8E-17 1.9E-21 144.3 18.1 206 99-382 77-297 (472)
164 KOG2445 Nuclear pore complex c 99.7 2.1E-16 4.4E-21 137.7 19.7 236 39-334 55-318 (361)
165 COG2319 FOG: WD40 repeat [Gene 99.7 1.6E-14 3.5E-19 140.4 35.2 289 36-422 148-443 (466)
166 KOG2919 Guanine nucleotide-bin 99.7 5.1E-16 1.1E-20 136.1 21.6 244 108-422 54-328 (406)
167 KOG1007 WD repeat protein TSSC 99.7 4.5E-16 9.7E-21 134.5 19.4 166 41-222 121-290 (370)
168 KOG0649 WD40 repeat protein [G 99.7 4.2E-15 9.1E-20 125.6 23.4 172 45-233 12-198 (325)
169 KOG1274 WD40 repeat protein [G 99.7 1.8E-15 3.9E-20 149.1 24.4 200 42-335 55-263 (933)
170 KOG1538 Uncharacterized conser 99.7 5.2E-16 1.1E-20 147.7 19.6 290 45-437 14-309 (1081)
171 KOG0303 Actin-binding protein 99.7 1.2E-15 2.6E-20 137.1 20.8 170 38-222 76-250 (472)
172 KOG1034 Transcriptional repres 99.7 5.6E-16 1.2E-20 136.2 17.5 257 42-378 88-382 (385)
173 KOG4378 Nuclear protein COP1 [ 99.7 8.8E-16 1.9E-20 141.6 19.5 272 59-423 5-282 (673)
174 KOG1334 WD40 repeat protein [G 99.7 2.7E-16 5.8E-21 144.8 15.0 307 37-421 136-466 (559)
175 KOG0650 WD40 repeat nucleolar 99.7 8.2E-16 1.8E-20 144.8 18.4 241 99-419 396-678 (733)
176 KOG1310 WD40 repeat protein [G 99.7 5.9E-16 1.3E-20 144.4 16.4 168 36-222 43-232 (758)
177 KOG2110 Uncharacterized conser 99.7 3.9E-14 8.5E-19 126.6 26.9 242 43-426 5-253 (391)
178 KOG1587 Cytoplasmic dynein int 99.7 3.6E-15 7.9E-20 146.1 22.2 254 43-424 242-519 (555)
179 KOG4328 WD40 protein [Function 99.7 2E-15 4.3E-20 138.1 16.2 208 100-421 183-399 (498)
180 KOG0644 Uncharacterized conser 99.7 5.1E-16 1.1E-20 151.2 11.6 274 39-421 186-468 (1113)
181 KOG1963 WD40 repeat protein [G 99.7 1E-13 2.2E-18 136.6 27.2 303 41-426 203-544 (792)
182 KOG0290 Conserved WD40 repeat- 99.6 3.5E-15 7.6E-20 129.1 14.2 228 142-440 93-344 (364)
183 KOG0642 Cell-cycle nuclear pro 99.6 2.3E-15 4.9E-20 141.2 13.7 213 39-335 340-562 (577)
184 KOG1273 WD40 repeat protein [G 99.6 2.3E-14 4.9E-19 125.5 18.9 198 148-421 26-226 (405)
185 KOG1240 Protein kinase contain 99.6 1.1E-13 2.4E-18 140.4 25.0 170 41-223 1046-1227(1431)
186 KOG2055 WD40 repeat protein [G 99.6 3.2E-14 7E-19 130.4 18.7 245 44-334 258-512 (514)
187 PRK01742 tolB translocation pr 99.6 4.4E-14 9.6E-19 138.7 21.2 236 65-402 183-426 (429)
188 KOG0290 Conserved WD40 repeat- 99.6 1.9E-14 4.2E-19 124.6 15.8 212 41-335 94-319 (364)
189 KOG0771 Prolactin regulatory e 99.6 1.6E-14 3.5E-19 131.2 15.1 197 47-335 148-355 (398)
190 KOG1310 WD40 repeat protein [G 99.6 3.9E-14 8.5E-19 132.4 14.9 124 97-222 44-179 (758)
191 KOG1445 Tumor-specific antigen 99.5 7E-14 1.5E-18 132.7 13.5 217 123-420 600-843 (1012)
192 KOG1963 WD40 repeat protein [G 99.5 7.7E-12 1.7E-16 123.5 28.1 297 49-435 22-336 (792)
193 KOG1517 Guanine nucleotide bin 99.5 1.3E-12 2.9E-17 130.8 22.2 258 44-426 1065-1338(1387)
194 KOG1524 WD40 repeat-containing 99.5 1.1E-13 2.4E-18 129.0 13.4 264 101-416 12-281 (737)
195 KOG0771 Prolactin regulatory e 99.5 2.3E-13 4.9E-18 123.8 15.0 203 107-424 148-357 (398)
196 PRK01742 tolB translocation pr 99.5 1.3E-12 2.8E-17 128.3 21.2 210 125-420 183-400 (429)
197 PRK11028 6-phosphogluconolacto 99.5 1E-11 2.2E-16 118.1 26.4 232 119-422 5-259 (330)
198 KOG1009 Chromatin assembly com 99.5 1.5E-13 3.3E-18 124.2 12.6 157 105-336 15-197 (434)
199 KOG0322 G-protein beta subunit 99.5 9.5E-13 2.1E-17 112.8 16.1 216 41-333 54-322 (323)
200 KOG1188 WD40 repeat protein [G 99.5 4.6E-13 1E-17 118.6 14.4 174 35-226 62-247 (376)
201 KOG2321 WD40 repeat protein [G 99.5 7.9E-12 1.7E-16 117.8 23.3 288 41-418 49-340 (703)
202 KOG1272 WD40-repeat-containing 99.5 1.2E-13 2.5E-18 126.9 9.5 194 47-337 133-326 (545)
203 KOG0974 WD-repeat protein WDR6 99.5 3.3E-12 7.1E-17 128.2 18.5 196 115-429 98-296 (967)
204 KOG3881 Uncharacterized conser 99.5 1.7E-11 3.6E-16 110.8 20.5 238 116-424 69-323 (412)
205 KOG0649 WD40 repeat protein [G 99.4 1.2E-10 2.5E-15 99.0 22.3 231 110-422 17-275 (325)
206 PRK03629 tolB translocation pr 99.4 1.1E-10 2.5E-15 114.4 25.4 217 102-401 197-427 (429)
207 KOG4227 WD40 repeat protein [G 99.4 2.9E-11 6.4E-16 109.0 19.1 256 99-429 52-331 (609)
208 PRK03629 tolB translocation pr 99.4 2.7E-10 5.9E-15 111.8 27.5 217 126-425 179-410 (429)
209 PF08662 eIF2A: Eukaryotic tra 99.4 2.4E-11 5.2E-16 105.4 17.3 76 305-427 101-185 (194)
210 KOG1538 Uncharacterized conser 99.4 1.2E-11 2.6E-16 118.4 16.5 236 38-377 48-291 (1081)
211 KOG1587 Cytoplasmic dynein int 99.4 9.8E-11 2.1E-15 115.2 23.2 246 125-432 221-483 (555)
212 KOG2111 Uncharacterized conser 99.4 3.3E-10 7.1E-15 100.0 23.8 239 46-424 8-259 (346)
213 KOG1523 Actin-related protein 99.4 2.5E-10 5.4E-15 100.7 22.7 221 44-337 11-239 (361)
214 KOG1334 WD40 repeat protein [G 99.4 6.4E-12 1.4E-16 116.3 12.9 263 99-431 138-434 (559)
215 PRK05137 tolB translocation pr 99.4 4.7E-10 1E-14 110.6 27.0 218 126-426 182-417 (435)
216 KOG2110 Uncharacterized conser 99.4 1.3E-10 2.7E-15 104.5 20.1 157 105-336 89-250 (391)
217 PRK04922 tolB translocation pr 99.4 1.5E-10 3.2E-15 114.0 23.1 217 102-401 202-432 (433)
218 KOG4547 WD40 repeat-containing 99.3 1.2E-10 2.5E-15 110.7 19.9 189 114-421 3-220 (541)
219 PRK02889 tolB translocation pr 99.3 2.6E-10 5.7E-15 111.9 23.4 220 101-402 193-425 (427)
220 KOG1240 Protein kinase contain 99.3 7.8E-11 1.7E-15 120.1 19.8 167 98-336 1043-1227(1431)
221 PRK04922 tolB translocation pr 99.3 3.9E-10 8.5E-15 111.1 24.1 222 126-430 184-420 (433)
222 KOG2394 WD40 protein DMR-N9 [G 99.3 5.1E-11 1.1E-15 111.7 16.4 220 160-426 185-457 (636)
223 KOG1524 WD40 repeat-containing 99.3 1.5E-10 3.3E-15 108.5 18.3 207 57-330 76-282 (737)
224 PF02239 Cytochrom_D1: Cytochr 99.3 9.6E-09 2.1E-13 98.2 31.4 293 47-426 40-352 (369)
225 KOG3881 Uncharacterized conser 99.3 3E-10 6.4E-15 102.8 19.4 205 43-337 105-323 (412)
226 KOG4497 Uncharacterized conser 99.3 1.3E-10 2.8E-15 102.8 15.8 306 110-428 15-398 (447)
227 KOG1409 Uncharacterized conser 99.3 2E-10 4.4E-15 102.2 16.6 222 38-337 19-273 (404)
228 PRK05137 tolB translocation pr 99.3 3.6E-09 7.9E-14 104.3 27.2 217 101-401 199-432 (435)
229 KOG1523 Actin-related protein 99.3 2.6E-10 5.5E-15 100.7 16.2 222 104-424 11-239 (361)
230 KOG2111 Uncharacterized conser 99.3 5.6E-09 1.2E-13 92.3 24.0 159 103-335 94-257 (346)
231 PF02239 Cytochrom_D1: Cytochr 99.2 1.1E-08 2.4E-13 97.7 27.9 274 58-424 8-305 (369)
232 PRK02889 tolB translocation pr 99.2 3E-09 6.4E-14 104.5 22.0 206 126-413 176-392 (427)
233 PF08662 eIF2A: Eukaryotic tra 99.2 1.7E-09 3.7E-14 93.8 18.1 75 145-224 59-136 (194)
234 KOG1272 WD40-repeat-containing 99.2 4.7E-11 1E-15 110.0 6.9 110 108-225 134-243 (545)
235 KOG2139 WD40 repeat protein [G 99.2 5.4E-09 1.2E-13 93.9 19.1 236 105-422 100-384 (445)
236 TIGR02800 propeller_TolB tol-p 99.1 3.6E-08 7.9E-13 96.9 25.9 218 125-425 169-401 (417)
237 PF10282 Lactonase: Lactonase, 99.1 7.1E-07 1.5E-11 85.2 33.5 250 108-427 41-330 (345)
238 KOG0280 Uncharacterized conser 99.1 3.9E-08 8.4E-13 86.2 22.0 244 106-425 72-337 (339)
239 TIGR02800 propeller_TolB tol-p 99.1 3.2E-08 6.9E-13 97.3 24.7 186 102-369 188-383 (417)
240 PRK04792 tolB translocation pr 99.1 5E-08 1.1E-12 96.3 25.7 216 103-401 217-446 (448)
241 KOG2394 WD40 protein DMR-N9 [G 99.1 1.6E-09 3.5E-14 101.8 13.6 177 43-223 219-454 (636)
242 KOG2139 WD40 repeat protein [G 99.1 1.4E-08 3E-13 91.3 18.3 211 148-430 101-318 (445)
243 KOG0280 Uncharacterized conser 99.1 6.9E-10 1.5E-14 96.9 9.8 163 39-219 161-331 (339)
244 PLN02919 haloacid dehalogenase 99.1 2.3E-07 5E-12 100.1 31.0 256 109-425 573-892 (1057)
245 TIGR02658 TTQ_MADH_Hv methylam 99.1 5.1E-07 1.1E-11 84.6 28.7 270 126-428 27-337 (352)
246 PRK00178 tolB translocation pr 99.1 1.1E-07 2.3E-12 93.9 25.5 217 127-425 180-410 (430)
247 KOG1354 Serine/threonine prote 99.1 3.2E-08 7E-13 88.4 19.2 296 43-424 25-362 (433)
248 KOG4547 WD40 repeat-containing 99.0 3.3E-08 7.2E-13 94.3 20.1 206 53-335 2-221 (541)
249 KOG4190 Uncharacterized conser 99.0 2.4E-09 5.2E-14 100.9 11.7 176 39-229 731-914 (1034)
250 PRK00178 tolB translocation pr 99.0 1.1E-07 2.4E-12 93.9 24.1 217 102-401 197-427 (430)
251 KOG0974 WD-repeat protein WDR6 99.0 1.8E-08 4E-13 101.8 17.7 197 45-335 89-289 (967)
252 PRK04792 tolB translocation pr 99.0 3.9E-07 8.4E-12 90.0 26.6 216 127-424 199-428 (448)
253 PF00400 WD40: WD domain, G-be 99.0 1.1E-09 2.4E-14 68.2 4.8 39 381-419 1-39 (39)
254 PRK01029 tolB translocation pr 98.9 5.1E-07 1.1E-11 88.5 25.2 233 127-432 166-414 (428)
255 PF10282 Lactonase: Lactonase, 98.9 1.9E-05 4.2E-10 75.4 34.2 276 45-399 38-345 (345)
256 KOG1409 Uncharacterized conser 98.9 4.1E-08 8.8E-13 87.8 14.1 245 100-426 21-275 (404)
257 KOG1354 Serine/threonine prote 98.9 9.7E-08 2.1E-12 85.4 15.9 171 44-221 85-301 (433)
258 KOG0309 Conserved WD40 repeat- 98.9 1.1E-08 2.4E-13 99.7 10.0 161 44-222 68-233 (1081)
259 KOG4497 Uncharacterized conser 98.8 4.3E-06 9.3E-11 74.7 23.2 335 44-416 49-427 (447)
260 PLN02919 haloacid dehalogenase 98.8 1.4E-05 3E-10 86.6 32.1 276 48-383 572-892 (1057)
261 PRK01029 tolB translocation pr 98.8 3.5E-06 7.6E-11 82.6 25.2 217 106-402 187-425 (428)
262 KOG0882 Cyclophilin-related pe 98.8 2.2E-07 4.7E-12 86.0 15.1 271 42-387 8-313 (558)
263 TIGR03300 assembly_YfgL outer 98.8 1.4E-05 3E-10 77.5 28.4 270 56-425 65-342 (377)
264 KOG1064 RAVE (regulator of V-A 98.7 7.5E-08 1.6E-12 102.3 11.6 193 104-388 2209-2407(2439)
265 KOG3914 WD repeat protein WDR4 98.7 2.6E-07 5.7E-12 84.4 13.3 152 114-338 72-227 (390)
266 KOG2321 WD40 repeat protein [G 98.7 6.3E-07 1.4E-11 85.4 15.8 120 103-227 175-308 (703)
267 PF00400 WD40: WD domain, G-be 98.7 5E-08 1.1E-12 60.6 5.8 39 180-219 1-39 (39)
268 COG2706 3-carboxymuconate cycl 98.7 0.00011 2.4E-09 66.9 28.8 279 65-428 15-330 (346)
269 KOG2315 Predicted translation 98.7 4.9E-06 1.1E-10 79.4 20.3 116 303-427 269-396 (566)
270 TIGR03300 assembly_YfgL outer 98.6 3.3E-05 7.1E-10 74.9 26.3 258 56-418 105-376 (377)
271 KOG4190 Uncharacterized conser 98.6 1.4E-07 3E-12 89.3 7.5 175 183-424 728-909 (1034)
272 KOG1064 RAVE (regulator of V-A 98.6 4.6E-07 1E-11 96.6 12.0 155 43-222 2208-2367(2439)
273 COG4946 Uncharacterized protei 98.5 0.00011 2.4E-09 69.0 25.1 153 51-228 327-484 (668)
274 KOG4532 WD40-like repeat conta 98.5 3.4E-05 7.4E-10 67.2 20.2 147 56-222 84-234 (344)
275 KOG4532 WD40-like repeat conta 98.5 2.5E-05 5.4E-10 68.1 18.6 227 116-412 84-323 (344)
276 KOG3914 WD repeat protein WDR4 98.5 1.8E-06 3.9E-11 79.0 12.0 107 119-230 125-232 (390)
277 KOG2315 Predicted translation 98.5 6.6E-05 1.4E-09 71.8 22.6 192 17-226 138-349 (566)
278 COG5170 CDC55 Serine/threonine 98.5 4.3E-06 9.4E-11 74.1 13.8 171 43-222 26-253 (460)
279 PF08450 SGL: SMP-30/Gluconola 98.5 0.00098 2.1E-08 60.4 30.3 218 109-407 5-241 (246)
280 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00056 1.2E-08 64.4 28.2 254 51-387 53-338 (352)
281 PF13360 PQQ_2: PQQ-like domai 98.5 5.2E-05 1.1E-09 68.2 21.0 224 124-425 1-234 (238)
282 KOG2695 WD40 repeat protein [G 98.4 1.1E-06 2.3E-11 79.0 8.9 149 58-229 226-384 (425)
283 KOG1832 HIV-1 Vpr-binding prot 98.4 3.4E-07 7.4E-12 91.3 6.0 156 38-224 1096-1258(1516)
284 PRK04043 tolB translocation pr 98.4 0.00021 4.5E-09 69.9 24.8 197 146-426 188-405 (419)
285 KOG4714 Nucleoporin [Nuclear s 98.4 1.6E-06 3.5E-11 75.0 8.8 213 41-335 33-255 (319)
286 COG2706 3-carboxymuconate cycl 98.3 0.0027 5.8E-08 58.1 33.1 279 41-400 37-345 (346)
287 PRK04043 tolB translocation pr 98.3 0.00027 5.8E-09 69.1 23.0 109 106-218 190-304 (419)
288 KOG2695 WD40 repeat protein [G 98.3 2.5E-06 5.5E-11 76.6 7.8 100 120-225 228-333 (425)
289 KOG4714 Nucleoporin [Nuclear s 98.3 3E-06 6.5E-11 73.3 7.8 76 44-135 180-255 (319)
290 KOG0309 Conserved WD40 repeat- 98.3 4.4E-06 9.5E-11 82.1 9.4 198 106-422 27-233 (1081)
291 PF04762 IKI3: IKI3 family; I 98.2 0.007 1.5E-07 64.9 33.4 320 42-422 208-565 (928)
292 PF15492 Nbas_N: Neuroblastoma 98.2 0.0035 7.5E-08 55.7 24.4 37 390-426 228-264 (282)
293 KOG2041 WD40 repeat protein [G 98.2 0.0003 6.5E-09 69.4 19.5 171 40-221 11-186 (1189)
294 COG5354 Uncharacterized protei 98.2 0.0019 4.2E-08 61.5 24.0 278 44-412 72-420 (561)
295 KOG0882 Cyclophilin-related pe 98.1 3.3E-05 7.2E-10 72.0 11.4 225 101-430 7-240 (558)
296 PF13360 PQQ_2: PQQ-like domai 98.1 0.0077 1.7E-07 54.0 27.9 105 115-226 35-145 (238)
297 PF04762 IKI3: IKI3 family; I 98.0 0.0064 1.4E-07 65.2 28.0 113 305-424 210-336 (928)
298 PF15492 Nbas_N: Neuroblastoma 98.0 0.0071 1.5E-07 53.8 23.4 104 108-213 48-170 (282)
299 PRK11138 outer membrane biogen 98.0 0.0059 1.3E-07 59.5 25.7 260 58-420 122-393 (394)
300 PRK11138 outer membrane biogen 98.0 0.0099 2.1E-07 58.0 26.5 148 57-224 70-226 (394)
301 COG5170 CDC55 Serine/threonine 98.0 6.4E-05 1.4E-09 66.9 9.7 122 301-424 169-312 (460)
302 smart00320 WD40 WD40 repeats. 97.9 2.3E-05 5.1E-10 47.3 5.2 38 382-419 3-40 (40)
303 PF07433 DUF1513: Protein of u 97.9 0.016 3.6E-07 52.9 25.8 139 48-203 9-175 (305)
304 COG4946 Uncharacterized protei 97.9 0.0026 5.6E-08 60.1 19.3 149 111-337 327-480 (668)
305 KOG1275 PAB-dependent poly(A) 97.8 0.00055 1.2E-08 69.4 15.3 102 115-223 146-256 (1118)
306 KOG1912 WD40 repeat protein [G 97.8 0.023 5.1E-07 57.2 26.0 89 39-144 51-153 (1062)
307 COG5354 Uncharacterized protei 97.8 0.0041 8.8E-08 59.4 19.1 241 105-428 34-313 (561)
308 KOG2314 Translation initiation 97.8 0.015 3.3E-07 56.2 22.8 120 305-427 446-579 (698)
309 KOG2066 Vacuolar assembly/sort 97.8 0.00029 6.4E-09 70.4 11.9 153 43-229 39-195 (846)
310 KOG1275 PAB-dependent poly(A) 97.8 0.00036 7.7E-09 70.7 12.3 152 45-222 179-343 (1118)
311 KOG2114 Vacuolar assembly/sort 97.7 0.0047 1E-07 62.6 19.4 203 160-424 35-246 (933)
312 PF08450 SGL: SMP-30/Gluconola 97.7 0.036 7.9E-07 50.1 27.9 223 48-367 4-242 (246)
313 KOG2066 Vacuolar assembly/sort 97.7 0.0015 3.2E-08 65.6 15.3 155 39-221 54-233 (846)
314 KOG1008 Uncharacterized conser 97.7 1E-05 2.3E-10 78.4 0.4 170 36-222 95-276 (783)
315 KOG1645 RING-finger-containing 97.6 0.0076 1.6E-07 56.0 18.2 73 148-223 196-268 (463)
316 KOG3617 WD40 and TPR repeat-co 97.6 0.0024 5.2E-08 64.5 15.6 102 115-221 26-131 (1416)
317 PF11768 DUF3312: Protein of u 97.6 0.0043 9.3E-08 60.6 16.2 91 172-336 238-331 (545)
318 KOG1645 RING-finger-containing 97.5 0.0053 1.1E-07 56.9 15.7 81 38-136 188-268 (463)
319 PF11768 DUF3312: Protein of u 97.5 0.001 2.3E-08 64.7 11.1 87 130-222 240-330 (545)
320 smart00320 WD40 WD40 repeats. 97.5 0.00026 5.7E-09 42.3 4.9 38 181-219 3-40 (40)
321 KOG2314 Translation initiation 97.5 0.0011 2.4E-08 63.7 10.8 101 307-408 252-363 (698)
322 KOG1912 WD40 repeat protein [G 97.4 0.036 7.9E-07 55.9 20.3 115 108-225 20-147 (1062)
323 PRK02888 nitrous-oxide reducta 97.3 0.011 2.5E-07 59.1 15.9 103 118-223 238-353 (635)
324 KOG2041 WD40 repeat protein [G 97.3 0.031 6.7E-07 55.8 18.2 123 37-180 65-188 (1189)
325 KOG1832 HIV-1 Vpr-binding prot 97.3 0.00028 6E-09 71.3 4.2 72 148-222 1104-1176(1516)
326 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.027 5.9E-07 43.1 13.6 102 106-216 2-109 (111)
327 KOG2114 Vacuolar assembly/sort 97.1 0.13 2.8E-06 52.7 20.9 210 115-398 34-263 (933)
328 PF08553 VID27: VID27 cytoplas 97.0 0.019 4.1E-07 59.6 15.1 106 112-219 489-604 (794)
329 PF06433 Me-amine-dh_H: Methyl 97.0 0.28 6E-06 45.7 24.1 241 124-428 65-327 (342)
330 PF08596 Lgl_C: Lethal giant l 97.0 0.38 8.2E-06 46.6 25.1 131 45-178 3-173 (395)
331 KOG1920 IkappaB kinase complex 96.9 0.16 3.4E-06 54.1 20.1 111 308-424 199-325 (1265)
332 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.13 2.8E-06 39.4 14.0 104 46-173 2-109 (111)
333 KOG2444 WD40 repeat protein [G 96.8 0.0033 7.2E-08 54.1 5.9 106 116-222 70-178 (238)
334 cd00216 PQQ_DH Dehydrogenases 96.7 0.78 1.7E-05 46.1 29.3 117 58-187 63-192 (488)
335 KOG3621 WD40 repeat-containing 96.7 0.017 3.7E-07 57.5 11.0 114 156-335 41-155 (726)
336 KOG2395 Protein involved in va 96.6 0.13 2.7E-06 50.0 15.4 106 113-220 342-458 (644)
337 PF07433 DUF1513: Protein of u 96.4 0.73 1.6E-05 42.4 24.8 96 109-207 10-115 (305)
338 PF08553 VID27: VID27 cytoplas 96.4 0.068 1.5E-06 55.6 13.8 99 116-221 542-647 (794)
339 KOG1920 IkappaB kinase complex 96.3 2.1 4.4E-05 46.1 26.4 67 44-130 69-135 (1265)
340 COG3391 Uncharacterized conser 96.3 1.2 2.6E-05 43.2 23.2 222 109-403 79-310 (381)
341 PF03178 CPSF_A: CPSF A subuni 96.3 1 2.3E-05 42.4 20.5 93 127-223 3-117 (321)
342 COG3386 Gluconolactonase [Carb 96.3 1 2.2E-05 42.1 22.5 103 305-408 163-272 (307)
343 KOG4649 PQQ (pyrrolo-quinoline 96.2 0.86 1.9E-05 40.4 23.4 110 116-230 23-132 (354)
344 COG0823 TolB Periplasmic compo 96.2 0.55 1.2E-05 46.0 18.0 50 170-220 218-267 (425)
345 PF04053 Coatomer_WDAD: Coatom 96.1 0.28 6.2E-06 48.2 15.9 101 306-419 70-171 (443)
346 PF14583 Pectate_lyase22: Olig 96.1 1.4 2.9E-05 42.0 26.6 153 50-222 42-223 (386)
347 PF04841 Vps16_N: Vps16, N-ter 96.0 0.67 1.5E-05 45.3 18.0 48 171-221 62-109 (410)
348 COG0823 TolB Periplasmic compo 95.9 0.35 7.6E-06 47.3 15.5 119 310-434 243-371 (425)
349 PF04053 Coatomer_WDAD: Coatom 95.8 0.25 5.5E-06 48.5 14.0 142 43-221 32-173 (443)
350 PF00930 DPPIV_N: Dipeptidyl p 95.8 1.1 2.5E-05 42.8 18.4 91 126-220 23-130 (353)
351 PF08596 Lgl_C: Lethal giant l 95.6 2.5 5.3E-05 41.1 21.9 173 185-422 81-291 (395)
352 KOG3617 WD40 and TPR repeat-co 95.5 0.035 7.6E-07 56.5 6.7 70 307-421 62-131 (1416)
353 COG3391 Uncharacterized conser 95.3 3 6.6E-05 40.4 25.5 191 161-426 87-288 (381)
354 KOG4640 Anaphase-promoting com 95.3 0.098 2.1E-06 51.7 8.7 77 146-227 21-98 (665)
355 KOG3621 WD40 repeat-containing 95.2 0.089 1.9E-06 52.6 8.4 110 310-422 39-155 (726)
356 KOG1008 Uncharacterized conser 95.1 0.007 1.5E-07 59.5 0.5 155 44-220 57-224 (783)
357 KOG2395 Protein involved in va 95.1 0.57 1.2E-05 45.7 13.0 148 158-377 344-498 (644)
358 PHA02713 hypothetical protein; 94.8 3 6.4E-05 42.7 18.6 52 372-425 481-537 (557)
359 KOG4441 Proteins containing BT 94.3 7.2 0.00016 40.0 19.8 94 116-214 285-392 (571)
360 KOG2444 WD40 repeat protein [G 94.2 0.16 3.4E-06 44.1 6.5 104 316-422 70-178 (238)
361 PRK02888 nitrous-oxide reducta 94.2 2.1 4.6E-05 43.4 15.3 104 312-422 284-405 (635)
362 PF12894 Apc4_WD40: Anaphase-p 94.1 0.14 3.1E-06 32.7 4.7 30 392-421 12-41 (47)
363 KOG4640 Anaphase-promoting com 94.1 0.2 4.3E-06 49.7 7.7 46 381-426 51-97 (665)
364 PF12894 Apc4_WD40: Anaphase-p 94.0 0.2 4.4E-06 32.0 5.2 30 305-334 12-41 (47)
365 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.6 9.3 0.0002 38.8 28.9 70 116-186 120-197 (527)
366 PF06433 Me-amine-dh_H: Methyl 93.5 6.8 0.00015 36.8 16.6 60 171-231 270-330 (342)
367 KOG2079 Vacuolar assembly/sort 93.2 0.37 8.1E-06 50.8 8.3 69 162-231 101-170 (1206)
368 COG3386 Gluconolactonase [Carb 92.8 5.7 0.00012 37.1 14.9 69 353-421 113-193 (307)
369 PF03178 CPSF_A: CPSF A subuni 92.8 7.1 0.00015 36.7 16.0 137 66-221 62-202 (321)
370 PHA02713 hypothetical protein; 92.2 6.1 0.00013 40.5 15.6 24 315-338 512-537 (557)
371 KOG4649 PQQ (pyrrolo-quinoline 92.1 8.5 0.00018 34.4 14.8 71 116-188 63-133 (354)
372 PF06977 SdiA-regulated: SdiA- 91.8 9.5 0.00021 34.4 15.3 37 184-220 15-51 (248)
373 PF05694 SBP56: 56kDa selenium 91.2 2.7 5.8E-05 40.6 10.7 99 125-223 221-344 (461)
374 KOG2079 Vacuolar assembly/sort 91.1 0.9 1.9E-05 48.1 8.1 98 118-221 101-203 (1206)
375 PF10313 DUF2415: Uncharacteri 91.0 0.98 2.1E-05 28.1 5.2 33 104-136 1-35 (43)
376 cd00216 PQQ_DH Dehydrogenases 90.9 19 0.00042 36.2 23.3 107 116-225 61-187 (488)
377 PF07676 PD40: WD40-like Beta 90.3 1.2 2.5E-05 26.9 5.2 29 390-418 7-38 (39)
378 PF00930 DPPIV_N: Dipeptidyl p 89.9 1.2 2.6E-05 42.7 7.6 103 313-420 1-130 (353)
379 PF05694 SBP56: 56kDa selenium 89.9 0.97 2.1E-05 43.5 6.6 98 323-424 219-345 (461)
380 PF00780 CNH: CNH domain; Int 89.6 16 0.00035 33.3 23.5 63 115-182 6-68 (275)
381 PF10313 DUF2415: Uncharacteri 89.6 1.2 2.6E-05 27.7 4.6 32 191-222 1-34 (43)
382 KOG4499 Ca2+-binding protein R 89.5 4.7 0.0001 35.4 9.8 106 307-412 160-276 (310)
383 PF02897 Peptidase_S9_N: Proly 89.2 23 0.0005 34.6 18.2 31 194-224 127-161 (414)
384 TIGR02604 Piru_Ver_Nterm putat 89.1 8.1 0.00017 37.2 12.7 103 306-410 15-142 (367)
385 PRK13616 lipoprotein LpqB; Pro 88.4 26 0.00056 36.1 16.2 69 351-420 448-524 (591)
386 PF12234 Rav1p_C: RAVE protein 88.4 7.4 0.00016 39.9 12.0 96 121-220 46-155 (631)
387 PF14870 PSII_BNR: Photosynthe 88.2 20 0.00044 33.3 14.0 104 305-412 145-253 (302)
388 PF07676 PD40: WD40-like Beta 88.0 2.5 5.4E-05 25.4 5.5 30 189-218 7-38 (39)
389 PF00780 CNH: CNH domain; Int 88.0 21 0.00045 32.5 27.1 144 55-225 6-169 (275)
390 PF10647 Gmad1: Lipoprotein Lp 87.8 21 0.00045 32.3 17.7 115 307-422 68-198 (253)
391 PF14583 Pectate_lyase22: Olig 87.0 17 0.00038 34.8 12.9 51 171-221 321-381 (386)
392 PF05096 Glu_cyclase_2: Glutam 86.9 24 0.00051 32.0 16.1 107 115-227 55-163 (264)
393 COG3490 Uncharacterized protei 85.9 28 0.0006 31.8 18.4 84 136-221 58-148 (366)
394 KOG1916 Nuclear protein, conta 85.7 0.45 9.7E-06 49.3 1.8 118 100-221 129-265 (1283)
395 PHA03098 kelch-like protein; P 85.6 45 0.00097 33.9 16.6 65 115-181 342-417 (534)
396 KOG4441 Proteins containing BT 85.4 19 0.00042 36.9 13.4 103 115-222 427-547 (571)
397 PF12234 Rav1p_C: RAVE protein 82.9 22 0.00047 36.6 12.3 74 356-432 35-113 (631)
398 PF08728 CRT10: CRT10; InterP 82.8 17 0.00036 37.9 11.5 114 106-220 103-245 (717)
399 PRK13616 lipoprotein LpqB; Pro 82.7 63 0.0014 33.4 20.0 107 305-414 448-561 (591)
400 PF14727 PHTB1_N: PTHB1 N-term 82.2 53 0.0011 32.2 28.0 153 53-220 34-203 (418)
401 PF10647 Gmad1: Lipoprotein Lp 82.0 36 0.00079 30.7 12.5 106 306-418 25-141 (253)
402 PF04841 Vps16_N: Vps16, N-ter 81.5 56 0.0012 32.0 22.6 30 305-334 217-246 (410)
403 PF07569 Hira: TUP1-like enhan 80.6 5.1 0.00011 35.4 6.3 27 312-338 18-44 (219)
404 KOG4499 Ca2+-binding protein R 80.5 41 0.00089 29.8 11.8 99 47-154 161-262 (310)
405 COG5167 VID27 Protein involved 79.6 14 0.0003 36.4 9.1 59 161-221 574-632 (776)
406 TIGR02604 Piru_Ver_Nterm putat 79.6 60 0.0013 31.2 14.8 100 307-410 74-202 (367)
407 KOG1897 Damage-specific DNA bi 79.1 99 0.0021 33.4 23.2 56 162-217 501-562 (1096)
408 PF11715 Nup160: Nucleoporin N 78.8 8.2 0.00018 39.5 8.1 72 160-231 158-258 (547)
409 TIGR03606 non_repeat_PQQ dehyd 78.7 54 0.0012 32.5 13.1 106 305-412 30-166 (454)
410 KOG1897 Damage-specific DNA bi 78.6 1E+02 0.0022 33.3 20.2 91 127-223 751-858 (1096)
411 COG3490 Uncharacterized protei 77.9 26 0.00057 31.9 9.6 96 311-409 120-243 (366)
412 PF07995 GSDH: Glucose / Sorbo 75.8 26 0.00055 33.2 9.9 103 307-414 4-136 (331)
413 PF15390 DUF4613: Domain of un 75.8 73 0.0016 32.3 12.9 127 302-429 54-194 (671)
414 PF14781 BBS2_N: Ciliary BBSom 75.7 40 0.00086 27.0 13.2 124 48-184 3-131 (136)
415 PF03088 Str_synth: Strictosid 75.5 18 0.0004 26.7 6.9 54 321-379 32-85 (89)
416 PHA03098 kelch-like protein; P 74.6 60 0.0013 33.0 13.0 103 115-222 389-512 (534)
417 KOG2377 Uncharacterized conser 74.4 17 0.00036 35.4 7.9 101 304-405 66-167 (657)
418 TIGR02276 beta_rpt_yvtn 40-res 73.5 15 0.00033 22.1 5.4 31 115-145 2-33 (42)
419 TIGR02276 beta_rpt_yvtn 40-res 73.2 11 0.00025 22.6 4.7 30 200-229 1-30 (42)
420 PF06977 SdiA-regulated: SdiA- 73.0 72 0.0016 28.8 22.6 167 38-226 16-205 (248)
421 PF11715 Nup160: Nucleoporin N 72.8 8.6 0.00019 39.3 6.4 31 115-145 229-259 (547)
422 TIGR03075 PQQ_enz_alc_DH PQQ-d 72.2 48 0.001 33.7 11.4 109 116-226 69-194 (527)
423 PF10168 Nup88: Nuclear pore c 71.8 1.4E+02 0.0031 31.7 18.9 91 44-136 85-181 (717)
424 TIGR03074 PQQ_membr_DH membran 71.4 89 0.0019 33.4 13.4 110 116-227 194-350 (764)
425 PF07569 Hira: TUP1-like enhan 71.0 29 0.00063 30.6 8.4 26 115-140 21-46 (219)
426 KOG3630 Nuclear pore complex, 69.8 15 0.00032 39.9 7.0 40 391-430 198-237 (1405)
427 PF15390 DUF4613: Domain of un 69.7 79 0.0017 32.1 11.5 111 106-220 59-185 (671)
428 PF10168 Nup88: Nuclear pore c 69.7 90 0.0019 33.1 12.8 69 354-422 88-180 (717)
429 PF01731 Arylesterase: Arylest 69.3 21 0.00046 26.2 5.9 49 170-221 36-84 (86)
430 PF01436 NHL: NHL repeat; Int 68.7 11 0.00025 20.7 3.5 25 307-331 4-28 (28)
431 KOG4460 Nuclear pore complex, 66.7 66 0.0014 32.1 10.2 95 306-427 105-204 (741)
432 TIGR03074 PQQ_membr_DH membran 66.4 1.9E+02 0.0041 31.0 22.1 55 372-426 415-482 (764)
433 PHA02790 Kelch-like protein; P 65.7 1.5E+02 0.0033 29.7 13.8 100 115-222 362-471 (480)
434 COG3823 Glutamine cyclotransfe 63.9 80 0.0017 27.6 9.1 103 115-223 55-160 (262)
435 KOG1916 Nuclear protein, conta 61.0 4.8 0.0001 42.2 1.7 107 112-221 243-374 (1283)
436 PF14781 BBS2_N: Ciliary BBSom 59.9 90 0.002 25.1 12.5 102 117-221 11-125 (136)
437 smart00564 PQQ beta-propeller 59.7 24 0.00052 19.9 4.0 25 117-141 7-31 (33)
438 PF14655 RAB3GAP2_N: Rab3 GTPa 58.9 74 0.0016 31.1 9.3 34 304-337 307-340 (415)
439 PF14655 RAB3GAP2_N: Rab3 GTPa 58.4 83 0.0018 30.8 9.5 82 105-187 309-407 (415)
440 PF02897 Peptidase_S9_N: Proly 58.2 1.9E+02 0.004 28.2 27.7 109 109-221 129-260 (414)
441 PF12657 TFIIIC_delta: Transcr 58.1 86 0.0019 26.4 8.7 31 393-423 87-123 (173)
442 PHA02790 Kelch-like protein; P 56.8 2.2E+02 0.0047 28.6 17.0 102 315-424 362-473 (480)
443 COG4257 Vgb Streptogramin lyas 54.7 1.7E+02 0.0038 26.8 10.2 113 307-424 64-189 (353)
444 KOG1900 Nuclear pore complex, 53.5 2.1E+02 0.0045 32.1 12.1 34 302-335 240-273 (1311)
445 KOG3616 Selective LIM binding 53.5 37 0.00081 35.2 6.3 32 306-337 16-47 (1636)
446 PF01011 PQQ: PQQ enzyme repea 53.0 43 0.00094 19.9 4.4 29 118-146 2-30 (38)
447 PF07995 GSDH: Glucose / Sorbo 52.5 2.1E+02 0.0045 27.0 13.8 26 192-219 3-28 (331)
448 KOG2247 WD40 repeat-containing 52.0 2.8 6.1E-05 40.8 -1.5 110 108-222 39-148 (615)
449 KOG2280 Vacuolar assembly/sort 51.9 2.9E+02 0.0064 29.1 12.2 49 170-221 64-112 (829)
450 PF12768 Rax2: Cortical protei 51.6 2E+02 0.0043 26.5 14.5 76 102-179 35-124 (281)
451 KOG1900 Nuclear pore complex, 51.4 91 0.002 34.7 9.1 37 388-424 239-275 (1311)
452 PF14727 PHTB1_N: PTHB1 N-term 51.3 2.5E+02 0.0054 27.6 24.9 106 115-221 36-163 (418)
453 PRK13684 Ycf48-like protein; P 50.7 2.2E+02 0.0049 26.9 11.3 113 305-424 173-290 (334)
454 PF08728 CRT10: CRT10; InterP 48.1 1.2E+02 0.0025 32.0 9.1 74 305-420 164-245 (717)
455 PF12768 Rax2: Cortical protei 46.8 2.4E+02 0.0051 26.0 12.0 42 34-76 27-74 (281)
456 COG3823 Glutamine cyclotransfe 44.1 2.2E+02 0.0048 24.9 14.2 21 389-409 226-247 (262)
457 PF01731 Arylesterase: Arylest 43.7 55 0.0012 24.0 4.5 31 392-422 54-85 (86)
458 PF12341 DUF3639: Protein of u 43.1 59 0.0013 18.0 3.7 25 393-419 3-27 (27)
459 KOG1896 mRNA cleavage and poly 40.6 5.8E+02 0.013 28.7 14.1 112 101-219 1095-1211(1366)
460 COG5167 VID27 Protein involved 39.5 4.1E+02 0.009 26.7 11.7 60 361-421 572-632 (776)
461 TIGR03118 PEPCTERM_chp_1 conse 38.5 3.4E+02 0.0073 25.4 9.8 74 126-200 222-307 (336)
462 PF10214 Rrn6: RNA polymerase 38.2 4E+02 0.0087 28.6 11.8 97 306-402 147-257 (765)
463 PF14761 HPS3_N: Hermansky-Pud 37.1 1.7E+02 0.0037 25.7 7.1 55 363-418 29-92 (215)
464 TIGR03118 PEPCTERM_chp_1 conse 35.2 3.8E+02 0.0083 25.1 15.6 62 166-229 218-287 (336)
465 PF03022 MRJP: Major royal jel 33.4 3.9E+02 0.0084 24.7 15.3 143 127-335 35-216 (287)
466 PF10584 Proteasome_A_N: Prote 32.2 13 0.00029 19.6 -0.2 8 398-405 7-14 (23)
467 PF13570 PQQ_3: PQQ-like domai 31.8 74 0.0016 19.0 3.1 20 316-335 21-40 (40)
468 PF05096 Glu_cyclase_2: Glutam 30.3 4.2E+02 0.0092 24.1 22.9 84 137-225 34-122 (264)
469 TIGR03032 conserved hypothetic 29.6 4.8E+02 0.01 24.5 9.6 82 115-201 212-315 (335)
470 PF13449 Phytase-like: Esteras 28.5 5E+02 0.011 24.4 12.3 106 304-410 19-165 (326)
471 PF03088 Str_synth: Strictosid 28.5 2.2E+02 0.0047 21.0 5.5 46 166-212 33-78 (89)
472 KOG4460 Nuclear pore complex, 27.4 4.6E+02 0.01 26.5 8.9 94 43-138 103-202 (741)
473 TIGR03032 conserved hypothetic 25.4 5.8E+02 0.013 24.1 10.3 84 315-405 212-318 (335)
474 KOG2377 Uncharacterized conser 25.3 3.4E+02 0.0073 26.9 7.5 157 45-223 24-187 (657)
475 TIGR02608 delta_60_rpt delta-6 25.2 1E+02 0.0023 20.4 3.0 19 393-411 2-20 (55)
476 PLN00033 photosystem II stabil 24.5 6.7E+02 0.014 24.5 13.3 110 305-418 281-396 (398)
477 COG3204 Uncharacterized protei 24.1 5.9E+02 0.013 23.7 11.2 114 304-421 85-210 (316)
478 KOG3630 Nuclear pore complex, 22.7 3.2E+02 0.0069 30.4 7.4 134 59-204 117-257 (1405)
479 COG1520 FOG: WD40-like repeat 22.4 6.8E+02 0.015 23.8 11.5 102 117-224 69-174 (370)
480 PF14761 HPS3_N: Hermansky-Pud 21.8 4.6E+02 0.01 23.0 7.2 40 167-208 35-76 (215)
481 KOG1983 Tomosyn and related SN 21.3 1.2E+03 0.025 26.2 12.7 32 394-425 237-268 (993)
482 PF06739 SBBP: Beta-propeller 20.8 1.9E+02 0.0041 17.3 3.3 21 306-326 14-34 (38)
483 TIGR03606 non_repeat_PQQ dehyd 20.8 8.5E+02 0.018 24.3 13.5 50 107-157 33-90 (454)
484 KOG4659 Uncharacterized conser 20.7 1.1E+03 0.023 27.3 10.7 28 302-329 659-686 (1899)
485 PF11635 Med16: Mediator compl 20.6 1.1E+03 0.023 25.4 19.4 87 304-416 259-345 (753)
No 1
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=8.4e-51 Score=347.88 Aligned_cols=360 Identities=55% Similarity=0.960 Sum_probs=314.5
Q ss_pred CccccccccccCcCCchhhhhhhh-ccccceecccceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCccc
Q 013545 1 MWKEIGGREAGQIRPNSFANRVKS-HRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDY 79 (441)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~ 79 (441)
||+-...||.+ +++++|+++.++ .|+..|+..+-+.+..+|.+.|++|++.+..++|++||+.||.|.+||++....+
T Consensus 1 M~~fl~aRetG-~e~ns~~rR~~s~rRil~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~ 79 (397)
T KOG4283|consen 1 MWSFLKARETG-QESNSFARRFKSQRRILSLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY 79 (397)
T ss_pred Cchhhhhhhhc-CCCchHHHHHHhhhhhheeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccch
Confidence 99999999999 999999999998 6899999988788999999999999999999999999999999999999998888
Q ss_pred CCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCC
Q 013545 80 EGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAAS 159 (441)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (441)
+..+.+..+..+ +..++..+|+.+|.++.|+|.|..+|.|+|-|+++|+||.++-+..-.|++++.+++-+++|...+
T Consensus 80 e~s~li~k~~c~--v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~s 157 (397)
T KOG4283|consen 80 EASGLIAKHKCI--VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMS 157 (397)
T ss_pred hhccceeheeee--ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhc
Confidence 777777777666 446778899999999999999999999999999999999999999999999999999999999988
Q ss_pred ccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC-ceeeEeccCCccccC
Q 013545 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGR 238 (441)
Q Consensus 160 ~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~-~~~~~~~~~~~~~~~ 238 (441)
+.++|+|..|-+|++.|+++|.+..++.||.+.|.+|.|+|..+++|++||.||.||+||+|.. +|+.+++.+.. +
T Consensus 158 HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~---k 234 (397)
T KOG4283|consen 158 HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT---K 234 (397)
T ss_pred ceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC---c
Confidence 8899999999999999999999999999999999999999999999999999999999999987 89998876432 1
Q ss_pred CCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE
Q 013545 239 RPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY 318 (441)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 318 (441)
.+|.. ..-.+|.+.|++++|+.|+.+
T Consensus 235 ~~p~~------------------------------------------------------~~n~ah~gkvngla~tSd~~~ 260 (397)
T KOG4283|consen 235 RPPIL------------------------------------------------------KTNTAHYGKVNGLAWTSDARY 260 (397)
T ss_pred cCccc------------------------------------------------------cccccccceeeeeeecccchh
Confidence 11111 012478999999999999999
Q ss_pred EEEeecCCcEEEeeCCCCCceeeeeeeEEecc--CcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEE
Q 013545 319 LLSAGSDSRIRLWDVESGRNTLVNFETVRLQT--SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNC 396 (441)
Q Consensus 319 l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~ 396 (441)
+++.+.|.++++|+.+++++++.++..+.-+. ...........+..++.+..+++-++.+.++..+..+.+|-+.|.|
T Consensus 261 l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c 340 (397)
T KOG4283|consen 261 LASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINC 340 (397)
T ss_pred hhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeE
Confidence 99999999999999999987765554332111 1112222333455666777788999999999999999999999999
Q ss_pred EEEcCCCCeEEEeecCCcEEEeCC
Q 013545 397 CCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 397 v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
.++-|+=+.+.+|+.|+.|.-|.+
T Consensus 341 ~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 341 AAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EeecCchhhhhccccCCccccccc
Confidence 999999999999999999999988
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-47 Score=338.02 Aligned_cols=356 Identities=23% Similarity=0.368 Sum_probs=259.9
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+.||.++|-|++|+| ++.+|+|||.|.|+|+||+.+.+. . .+-+||+.-|.|++|+| |+.
T Consensus 110 S~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp------------~-----~t~KgH~~WVlcvawsP-Dgk 170 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETP------------L-----FTCKGHKNWVLCVAWSP-DGK 170 (480)
T ss_pred ccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCc------------c-----eeecCCccEEEEEEECC-Ccc
Confidence 3568999999999998 688999999999999999986542 1 12358999999999998 899
Q ss_pred EEEEEeCCCcEEEEECCCCeEEE-EEe-cCCeeEEEeeccCC--CCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVM-NFK-MPGKVYRTAMSPLA--ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~-~~~-~~~~~~~~~~~~~~--~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v 193 (441)
.||||+.|++|++||.++++++. .+. +...+..+++.|.. +.-.+||+++.||.|+|||+..+.++..+.||+.+|
T Consensus 171 ~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V 250 (480)
T KOG0271|consen 171 KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV 250 (480)
T ss_pred hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence 99999999999999999988753 233 23457888888753 223489999999999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC--CCCC---C-cccCC
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK--PRAP---Q-KRSAN 267 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~-~~~~~ 267 (441)
+||.|-.++ +++|||.|++||+|+...+.+.+.+..+..-+.... +...-.+..+...+.. ++.. + +....
T Consensus 251 TCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la-lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 251 TCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA-LSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred EEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeee-ccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 999997554 789999999999999999888877765321110000 0000000000000000 0000 0 00000
Q ss_pred -CCCccccCcccccCCCCcccccC-CC-cccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeee
Q 013545 268 -GNGVRQSSVGRIPAKGSVRQRLH-PG-MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE 344 (441)
Q Consensus 268 -~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~ 344 (441)
......++...+..+.++...+. +. .-....+..+|...|+.+.||||+++|||+|-|+.|++||..+++.. .
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l----a 403 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL----A 403 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh----h
Confidence 00000000001111111111111 11 11123356899999999999999999999999999999999998742 3
Q ss_pred eEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 345 TVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
+++.+.....+++.+.|.+++++++. .++++|++.+.++...|.||.++|.++.|+|||+.+++|+.|+.+|+|.
T Consensus 404 sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 404 SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 44555667788999999999988765 6899999999999999999999999999999999999999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.7e-45 Score=326.02 Aligned_cols=283 Identities=22% Similarity=0.363 Sum_probs=247.2
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-CCCEE
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DTGLF 119 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~~l 119 (441)
|-+.+|..+.|++ +++.|||||.+|.+++|+...... .+.++||+..|.++.|+|. ++..+
T Consensus 173 gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~-----------------~~~l~gH~~~v~~~~fhP~~~~~~l 234 (459)
T KOG0272|consen 173 GDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNL-----------------LQTLRGHTSRVGAAVFHPVDSDLNL 234 (459)
T ss_pred cCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcce-----------------eEEEeccccceeeEEEccCCCccce
Confidence 5568999999995 688999999999999999865421 1345799999999999998 36789
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545 120 VTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f 198 (441)
|||+.||++++|++.+..++..+..+ ..+..+.|+|.+ .+|++++.|.+-++||++++..+....||...|.+++|
T Consensus 235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG---~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf 311 (459)
T KOG0272|consen 235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG---KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAF 311 (459)
T ss_pred eeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCC---ceeeecccccchhhcccccchhhHhhcccccccceeEe
Confidence 99999999999999988888777643 457788888864 58999999999999999999988888999999999999
Q ss_pred ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccc
Q 013545 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR 278 (441)
Q Consensus 199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (441)
.|||. +++|||.|..-||||+|++.|+-.|
T Consensus 312 ~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L------------------------------------------------- 341 (459)
T KOG0272|consen 312 QPDGS-LAATGGLDSLGRVWDLRTGRCIMFL------------------------------------------------- 341 (459)
T ss_pred cCCCc-eeeccCccchhheeecccCcEEEEe-------------------------------------------------
Confidence 99997 7899999999999999999876554
Q ss_pred ccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEe
Q 013545 279 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT 358 (441)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (441)
.+|..+|.+|+|||+|..|||||.|++++|||++..+. ..++..+.+....+.+
T Consensus 342 ----------------------~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~ 395 (459)
T KOG0272|consen 342 ----------------------AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKY 395 (459)
T ss_pred ----------------------cccccceeeEeECCCceEEeecCCCCcEEEeeeccccc----ceecccccchhhheEe
Confidence 35888999999999999999999999999999997653 4566667777778888
Q ss_pred eC-CCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 359 TQ-DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 359 ~~-~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
.| .|.++++++. .++++|.-.++.++++|.||++.|.+|..+||+++++|+|.|++||+|.+
T Consensus 396 ~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 396 SPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred cccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 87 5666666654 68999999999999999999999999999999999999999999999974
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-42 Score=296.47 Aligned_cols=288 Identities=18% Similarity=0.361 Sum_probs=236.4
Q ss_pred ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
.++++.||.+.|+++.|++ +.++|+|+|.||.+.|||..+..+. +.-. -...-|-.++|+|
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~----haip-------------l~s~WVMtCA~sP- 107 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKV----HAIP-------------LPSSWVMTCAYSP- 107 (343)
T ss_pred eEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccce----eEEe-------------cCceeEEEEEECC-
Confidence 3678999999999999995 6889999999999999998654321 1111 2334566788887
Q ss_pred CCCEEEEEeCCCcEEEEECCCC--e----EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCT--R----VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS 187 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~--~----~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~ 187 (441)
.++++|.||.|....||++.+. + +...+. +.+.+.++.|..+ ..|++++.|.++.+||+++++.++.|.
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD----~~ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD----NHILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC----CceEecCCCceEEEEEcccceEEEEec
Confidence 6899999999999999999855 2 222232 2344555555542 357788999999999999999999999
Q ss_pred CCCCCeEEEEEec-CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545 188 GHRDGIMTVEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA 266 (441)
Q Consensus 188 ~h~~~v~~v~fsp-~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (441)
||.+.|.+++++| +++ .|+||+.|++.++||+|.+.|.+.|
T Consensus 184 GH~gDV~slsl~p~~~n-tFvSg~cD~~aklWD~R~~~c~qtF------------------------------------- 225 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSGQCVQTF------------------------------------- 225 (343)
T ss_pred CCcccEEEEecCCCCCC-eEEecccccceeeeeccCcceeEee-------------------------------------
Confidence 9999999999999 555 6899999999999999988776554
Q ss_pred CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE
Q 013545 267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV 346 (441)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~ 346 (441)
.+|.+.|++|+|.|+|..++|||.|+++|+||++..+.. ..|. .
T Consensus 226 ----------------------------------~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-a~ys-~ 269 (343)
T KOG0286|consen 226 ----------------------------------EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-AVYS-H 269 (343)
T ss_pred ----------------------------------cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE-eeec-c
Confidence 368888999999999999999999999999999987632 2222 1
Q ss_pred EeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 347 RLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
.....+...++++.+|++++.+.. .++.+||.-.++....|.||++.|+|+..+|||.-|+|||+|.++|||.
T Consensus 270 ~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 222344567899999999998644 7999999999999999999999999999999999999999999999995
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-39 Score=275.61 Aligned_cols=295 Identities=20% Similarity=0.329 Sum_probs=233.2
Q ss_pred ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
....+.+|++.|+.++..+.+.+.|++++.|.++.+|++...... - +. ..+-+.||...|..+..++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~-~-G~----------~~r~~~GHsH~v~dv~~s~- 73 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK-Y-GV----------PVRRLTGHSHFVSDVVLSS- 73 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc-c-Cc----------eeeeeeccceEecceEEcc-
Confidence 356688999999999998776788999999999999999754210 0 00 1123458999999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC-CCCC
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG-HRDG 192 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~-h~~~ 192 (441)
|+++++|+|+|+++|+||+++++..+.|..+ ..+.+++++++. ..+++|+-|.+|++||+..........+ |.+.
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn---~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN---RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW 150 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCC---ceeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence 8999999999999999999999888877654 458889999864 4799999999999999976644333333 4899
Q ss_pred eEEEEEecCC-CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 193 IMTVEWSTSS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 193 v~~v~fsp~~-~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
|.|+.|+|+. +.+++++|+|++||+||+++.+..
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~--------------------------------------------- 185 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR--------------------------------------------- 185 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh---------------------------------------------
Confidence 9999999983 347899999999999999853211
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 351 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~ 351 (441)
..+.+|.+.++.+++||||...++|+.||.+.+||+..++.. ..+. ...
T Consensus 186 --------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l----ysl~-a~~ 234 (315)
T KOG0279|consen 186 --------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL----YSLE-AFD 234 (315)
T ss_pred --------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee----Eecc-CCC
Confidence 113578899999999999999999999999999999988752 1111 123
Q ss_pred cceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeec----cc-----ccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 352 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR----GH-----YEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~----gh-----~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
....++|+|....+..+....++|||..++.++.+|+ |. .-...+++||+||+.|++|-.|+.||+|.+.
T Consensus 235 ~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 235 IVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 3456788888777766777889999999988776543 22 2235779999999999999999999999764
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-38 Score=277.70 Aligned_cols=294 Identities=24% Similarity=0.340 Sum_probs=222.6
Q ss_pred cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (441)
Q Consensus 98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwd 176 (441)
...||..+|.|+.|+| ++.+|+|||.|.|+|+||+.+..+..+.+.+ .-+.+++++|++. .||+|+.||+|++||
T Consensus 110 S~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk---~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK---KIASGSKDGSIRLWD 185 (480)
T ss_pred ccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc---hhhccccCCeEEEec
Confidence 3469999999999998 8999999999999999999999988877644 4488999999764 799999999999999
Q ss_pred CCCCcee-eeecCCCCCeEEEEEecC-----CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545 177 IASGAIS-QTLSGHRDGIMTVEWSTS-----SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 177 l~~~~~~-~~l~~h~~~v~~v~fsp~-----~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
.++|+.+ ..|+||...|++++|.|- .+ +|||+|.||+|+|||+..+.|+..+..+...+- +... +
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT------Cvrw--G 256 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT------CVRW--G 256 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEeccCccceE------EEEE--c
Confidence 9999764 689999999999999863 34 689999999999999999888887765443220 0000 0
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc-----------cCC---
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT-----------EDG--- 316 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-----------~dg--- 316 (441)
+.. .....+.+..+......+ +.. -..+.+|...|+.|+++ |.+
T Consensus 257 G~g---------------liySgS~DrtIkvw~a~d-----G~~--~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 257 GEG---------------LIYSGSQDRTIKVWRALD-----GKL--CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred CCc---------------eEEecCCCceEEEEEccc-----hhH--HHhhcccchheeeeeccchhhhhccccccccccC
Confidence 000 000001111111000000 000 01245666667766666 223
Q ss_pred ----------------------CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-Cce
Q 013545 317 ----------------------MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAV 373 (441)
Q Consensus 317 ----------------------~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 373 (441)
..|+||+.|.++.+|+....+.. ...+..++...+.+.++||+.++++++. ..|
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp---i~rmtgHq~lVn~V~fSPd~r~IASaSFDkSV 391 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP---ITRMTGHQALVNHVSFSPDGRYIASASFDKSV 391 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc---hhhhhchhhheeeEEECCCccEEEEeecccce
Confidence 35999999999999998754421 2223345667788999999999999877 689
Q ss_pred EEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545 374 KAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 374 ~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~ 429 (441)
|+|+..+|+-+.+|+||-+.|..|+||.|.++|+|||.|.|+++|++.+.++..=+
T Consensus 392 kLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL 447 (480)
T KOG0271|consen 392 KLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL 447 (480)
T ss_pred eeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC
Confidence 99999999999999999999999999999999999999999999999988866433
No 7
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.1e-37 Score=262.85 Aligned_cols=290 Identities=21% Similarity=0.364 Sum_probs=234.4
Q ss_pred ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
+.+.+.+|.++|+.+.|+| ++.+||||+.|..|.+|++....+ +.. ..+||+++|..+.+.+
T Consensus 39 p~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdce-----------N~~-----~lkgHsgAVM~l~~~~- 100 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCE-----------NFW-----VLKGHSGAVMELHGMR- 100 (338)
T ss_pred hhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEecccccc-----------cee-----eeccccceeEeeeecc-
Confidence 4567789999999999998 688999999999999999864321 111 2348999999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v 193 (441)
|+..++|+|.|++|+.||+++|+++..++.+.. +..+. |...+..++.+++.|+++++||+++...++++. ..-.+
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyql 177 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQL 177 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccc-cceeE
Confidence 788999999999999999999999988876544 33333 555567899999999999999999888887774 35678
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
+++.|...+.. ..||+-|+.|++||+|.+.+..+
T Consensus 178 tAv~f~d~s~q-v~sggIdn~ikvWd~r~~d~~~~--------------------------------------------- 211 (338)
T KOG0265|consen 178 TAVGFKDTSDQ-VISGGIDNDIKVWDLRKNDGLYT--------------------------------------------- 211 (338)
T ss_pred EEEEecccccc-eeeccccCceeeeccccCcceEE---------------------------------------------
Confidence 99999988875 57999999999999987654333
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC---ceeeeeeeE-Eec
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR---NTLVNFETV-RLQ 349 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~---~~~~~~~~~-~~~ 349 (441)
..+|.++|+.|..+|+|.++.+-+-|.++++||++.-. .....+... ...
T Consensus 212 --------------------------lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 212 --------------------------LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred --------------------------eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 35788999999999999999999999999999987532 111112111 111
Q ss_pred cCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEE
Q 013545 350 TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV 417 (441)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~v 417 (441)
......++++|+++.+-.+.. ..+.+||......+..|.||.+.|+++.|+|....|.+++.|++|.+
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 122345678888887766544 68999999999999999999999999999999999999999999875
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-35 Score=272.20 Aligned_cols=366 Identities=17% Similarity=0.232 Sum_probs=251.7
Q ss_pred ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
|+..+.-|..-|+|+.|+|+ |.+++|++.||+|.|||-.+++.. -.+ ....+|++.|.++.|+|
T Consensus 182 Fk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~v------------g~l--~~~~aHkGsIfalsWsP- 245 (603)
T KOG0318|consen 182 FKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKV------------GEL--EDSDAHKGSIFALSWSP- 245 (603)
T ss_pred eeecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCccEE------------EEe--cCCCCccccEEEEEECC-
Confidence 45556679999999999975 778999999999999999887642 111 12458999999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~ 194 (441)
|+.+|+|+|.|.++||||+.+.+++.++.+...+........+.. ..|++-+.+|.|.+++...+..++++.||...|+
T Consensus 246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk-d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT 324 (603)
T KOG0318|consen 246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK-DHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT 324 (603)
T ss_pred CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC-CeEEEEEcCcEEEEecccCCChhheeccccccee
Confidence 899999999999999999999999999998877544444444442 3567778899999999999999999999999999
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEec-cCCccccCC-----CCcccccccccCccCCcCCCCC-----Cc
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD-QSQSQLGRR-----PPLLKRKSLSAGQNSSVKPRAP-----QK 263 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~ 263 (441)
+++.+|++++ |.||+-||.|.-||..++.+.+... .+...+... ...........-.......... .+
T Consensus 325 aLtv~~d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~ 403 (603)
T KOG0318|consen 325 ALTVSPDGKT-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK 403 (603)
T ss_pred EEEEcCCCCE-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee
Confidence 9999999975 6899999999999999887655431 111111000 0001000000000000000000 00
Q ss_pred ccCCCCCccccCccccc---CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee
Q 013545 264 RSANGNGVRQSSVGRIP---AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 340 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~ 340 (441)
...-..+++..+++.+. +...+...-....... ..-.-...+++++|++.+++.|+.|+.|++|.++.....
T Consensus 404 lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~----~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~- 478 (603)
T KOG0318|consen 404 LGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSS----IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK- 478 (603)
T ss_pred cCCCceeEEEcCCCCEEEEEecCcEEEEecCCccee----eccccccceEEEcCCCCEEEEecccceEEEEEecCCccc-
Confidence 00000122222322111 0011100000000000 000113678999999999999999999999999875431
Q ss_pred eeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc-cccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545 341 VNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVW 418 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g-h~~~v~~v~fspd~~~l~s~s~D~~i~vW 418 (441)
.......+...+..++++||+.+++++-. ..+-+||+.+.+.....-+ |+..|+||+|||+++++||||-|.+|.||
T Consensus 479 -ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 479 -EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred -ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 11122334566777899999999887644 6899999988887544434 99999999999999999999999999999
Q ss_pred CCCCCC
Q 013545 419 CPSRHI 424 (441)
Q Consensus 419 ~~~~~~ 424 (441)
++..+-
T Consensus 558 sv~kP~ 563 (603)
T KOG0318|consen 558 SVKKPA 563 (603)
T ss_pred EccChh
Confidence 988654
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-36 Score=271.44 Aligned_cols=255 Identities=22% Similarity=0.327 Sum_probs=222.1
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS 179 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~ 179 (441)
|-+.+|..+.|+. +++.|||||++|.+++|...+...+.++.. .+.+..+.|+|.. +...+|+|+.||.+++|++.+
T Consensus 173 gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD-SDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC-CccceeeeccCCceeeeccCC
Confidence 5667787777665 899999999999999999998888777764 5678888999974 345799999999999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259 (441)
Q Consensus 180 ~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (441)
..+++.+.||...|..|+|+|+|++ |+|++-|.+-|+||+++...+
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~El--------------------------------- 296 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSEL--------------------------------- 296 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhh---------------------------------
Confidence 9999999999999999999999984 799999999999999864210
Q ss_pred CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce
Q 013545 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT 339 (441)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~ 339 (441)
-...+|...|.+++|.|||..++|||-|..-||||+++++..
T Consensus 297 --------------------------------------L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i 338 (459)
T KOG0272|consen 297 --------------------------------------LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI 338 (459)
T ss_pred --------------------------------------HhhcccccccceeEecCCCceeeccCccchhheeecccCcEE
Confidence 002478889999999999999999999999999999999864
Q ss_pred eeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcC-CCCeEEEeecCCcEEE
Q 013545 340 LVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS-QDQELYTGGNDRQILV 417 (441)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp-d~~~l~s~s~D~~i~v 417 (441)
+ .+..+...+..++++|+|..+++++. .++|+||+...+++.++.+|.+.|+.|.|+| .|.+|+|||.|++++|
T Consensus 339 m----~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ki 414 (459)
T KOG0272|consen 339 M----FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKI 414 (459)
T ss_pred E----EecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceee
Confidence 3 22335677788999999999998866 6899999999999999999999999999999 6888999999999999
Q ss_pred eCCCCCCCCCccCCcc
Q 013545 418 WCPSRHISDGVDAGPM 433 (441)
Q Consensus 418 W~~~~~~~~~~~~~~~ 433 (441)
|...+....+.++|-.
T Consensus 415 Ws~~~~~~~ksLaGHe 430 (459)
T KOG0272|consen 415 WSTRTWSPLKSLAGHE 430 (459)
T ss_pred ecCCCcccchhhcCCc
Confidence 9999999888888853
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-36 Score=292.33 Aligned_cols=261 Identities=23% Similarity=0.434 Sum_probs=214.8
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCc--ccCCCCceeccc------eeEEe------ecccccCcccceeEE
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT--DYEGGGHIAKHR------SVFVV------DKQHEHGHKYAISSA 109 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~------~~~~~------~~~~~~~h~~~V~~~ 109 (441)
..|+|..|+ +++..||.|-.|..|++|.+...+ .......+.... .+-.. ......||.++|..+
T Consensus 379 ~~v~ca~fS-ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 379 QGVTCAEFS-DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CcceeEeec-CCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 579999999 567799999999999999986321 111100000000 00000 012356999999999
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC
Q 013545 110 IWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG 188 (441)
Q Consensus 110 ~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~ 188 (441)
.|+| +..+|+|||.|+++|+|.+.+..++-.++. ..++..+.|+|.+ .++|+++.|.+.++|......+++.+.|
T Consensus 458 sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G---yYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 458 SFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG---YYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc---eEEEecCCCceeeeeecccCCchhhhcc
Confidence 9998 678999999999999999999998877764 4568888888864 6999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545 189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG 268 (441)
Q Consensus 189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (441)
|.+.|.|+.|+|+..+ +++||.|.+||+||+.++.+++.|
T Consensus 534 hlsDV~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~G~~VRiF--------------------------------------- 573 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNY-VATGSSDRTVRLWDVSTGNSVRIF--------------------------------------- 573 (707)
T ss_pred cccccceEEECCcccc-cccCCCCceEEEEEcCCCcEEEEe---------------------------------------
Confidence 9999999999999885 699999999999999987665543
Q ss_pred CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe
Q 013545 269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL 348 (441)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~ 348 (441)
.||.++|.+|+|||+|++|++|+.|+.|++||+.+++
T Consensus 574 --------------------------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~----------- 610 (707)
T KOG0263|consen 574 --------------------------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS----------- 610 (707)
T ss_pred --------------------------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc-----------
Confidence 4789999999999999999999999999999998654
Q ss_pred ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
.+..+.+|++-|.++.||.||..||+||.|.+|++||.....-.
T Consensus 611 ----------------------------------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 611 ----------------------------------LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred ----------------------------------chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 23566889999999999999999999999999999998755533
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.6e-35 Score=245.78 Aligned_cols=283 Identities=19% Similarity=0.261 Sum_probs=224.4
Q ss_pred CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcc-cceeEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 013545 56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGLFVTGSYDHYVKVWDTN 134 (441)
Q Consensus 56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~ 134 (441)
.-+|+|+|.|-|||+|...++.++.. . .|. ..|+.+...| ++..||+++.- .||+||++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rT-----------------i-qh~dsqVNrLeiTp-dk~~LAaa~~q-hvRlyD~~ 69 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRT-----------------I-QHPDSQVNRLEITP-DKKDLAAAGNQ-HVRLYDLN 69 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEE-----------------E-ecCccceeeEEEcC-CcchhhhccCC-eeEEEEcc
Confidence 35899999999999999998876421 0 122 3477888877 67788887764 79999998
Q ss_pred CCe--EEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeec
Q 013545 135 CTR--VVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGC 211 (441)
Q Consensus 135 ~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~ 211 (441)
++. ++.++..+ ..+..+.|..++ ..+++|+.||+++|||++...+.+.+ .|.++|.+|..+|+.. -|++|..
T Consensus 70 S~np~Pv~t~e~h~kNVtaVgF~~dg---rWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQt-eLis~dq 144 (311)
T KOG0315|consen 70 SNNPNPVATFEGHTKNVTAVGFQCDG---RWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQT-ELISGDQ 144 (311)
T ss_pred CCCCCceeEEeccCCceEEEEEeecC---eEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcc-eEEeecC
Confidence 866 46777654 568888888764 58999999999999999986665555 4779999999999865 4789999
Q ss_pred CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCC
Q 013545 212 DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP 291 (441)
Q Consensus 212 Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (441)
+|.|++||++...|.+.+-.
T Consensus 145 sg~irvWDl~~~~c~~~liP------------------------------------------------------------ 164 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIP------------------------------------------------------------ 164 (311)
T ss_pred CCcEEEEEccCCccccccCC------------------------------------------------------------
Confidence 99999999987544332210
Q ss_pred CcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc--eeeeeeeEEeccCcceEEEeeCCCcEEEEeC
Q 013545 292 GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN--TLVNFETVRLQTSKPIQLATTQDPAVVFVPC 369 (441)
Q Consensus 292 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (441)
.-..+|.++.+.|||.+|+++..-|++++|++-+... .+...+.+..+..-..++.++||.+++++.+
T Consensus 165 ----------e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 165 ----------EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred ----------CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec
Confidence 0113588999999999999999999999999876432 2333444555667778889999999998875
Q ss_pred C-CceEEEEccCC-ceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccCCcc
Q 013545 370 M-TAVKAFDIWSG-KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPM 433 (441)
Q Consensus 370 ~-~~~~~wd~~~~-~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~~~ 433 (441)
. .++++|+..+- ++-..+.||..++|+++||.||++|+|||.|+++|+|+++.++-...-.|..
T Consensus 235 sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 235 SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence 5 69999999887 6777899999999999999999999999999999999999888554444443
No 12
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.3e-34 Score=253.80 Aligned_cols=335 Identities=17% Similarity=0.245 Sum_probs=238.9
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+..|+.+|++++.+| +.++++||+.|....||+..++... ....||+..|+++.|+. ++.
T Consensus 59 tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~-----------------~eltgHKDSVt~~~Fsh-dgt 119 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFA-----------------GELTGHKDSVTCCSFSH-DGT 119 (399)
T ss_pred ehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcce-----------------eEecCCCCceEEEEEcc-Cce
Confidence 4568999999999998 6789999999999999999877521 12348999999999987 799
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v 196 (441)
+||||+.+|.|+||+..++.....+-. -+.+..+.++|. ..+|++|+.||.+.+|.+..+...+.+.||..++++-
T Consensus 120 lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~---a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 120 LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR---AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG 196 (399)
T ss_pred EEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccc---ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence 999999999999999999887665542 233556667763 4589999999999999999988889999999999999
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
.|.|+|++ ++++..||+|++||+.++..+..+...... ..+... .+ ..... ...-...+ .+.....
T Consensus 197 ~f~pdGKr-~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~---~~~~~~---~~--~~~~~----~~~g~~e~-~~~~~~~ 262 (399)
T KOG0296|consen 197 EFIPDGKR-ILTGYDDGTIIVWNPKTGQPLHKITQAEGL---ELPCIS---LN--LAGST----LTKGNSEG-VACGVNN 262 (399)
T ss_pred cccCCCce-EEEEecCceEEEEecCCCceeEEecccccC---cCCccc---cc--cccce----eEeccCCc-cEEEEcc
Confidence 99999995 689999999999999988766554422210 000000 00 00000 00000000 0000000
Q ss_pred ccccCCCCcccccCCCcccccccceeec---cCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHY---GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
..+.+.....+.. ......+. ..|-++.++.+=.+.|+|+-||+|.|||+.+.+.+. +-.+....
T Consensus 263 ----~sgKVv~~~n~~~---~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~-----~c~he~~V 330 (399)
T KOG0296|consen 263 ----GSGKVVNCNNGTV---PELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH-----ICEHEDGV 330 (399)
T ss_pred ----ccceEEEecCCCC---ccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe-----eccCCCce
Confidence 0011111111000 00011222 235555566666788999999999999998765332 12234556
Q ss_pred eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
+.+.+-+ ..+++++|. +.++.||..+|+++.++.||..+|.+++++|+.++++|+|.|++.+|+..+
T Consensus 331 ~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 331 TKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 7777777 455666655 789999999999999999999999999999999999999999999999865
No 13
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.4e-35 Score=268.66 Aligned_cols=297 Identities=19% Similarity=0.290 Sum_probs=245.0
Q ss_pred cccceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEE
Q 013545 32 LSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW 111 (441)
Q Consensus 32 ~~~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 111 (441)
++.....+.||+..|+++.|.|..+.+|+|++.|+.|+|||+...... .++..||..+|.++.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~----------------lrtf~gH~k~Vrd~~~ 266 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC----------------LRTFKGHRKPVRDASF 266 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce----------------ehhhhcchhhhhhhhc
Confidence 344455678999999999999877889999999999999998652210 1456699999999999
Q ss_pred eeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC
Q 013545 112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (441)
Q Consensus 112 ~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~ 191 (441)
+. ++..|+|+|.|++|++||+++|+++..+.......++.++|+. .+++++|+.|+.|+.||+++++.++.+..|.+
T Consensus 267 s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg 343 (503)
T KOG0282|consen 267 NN-CGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG 343 (503)
T ss_pred cc-cCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence 86 7889999999999999999999999999988888999999976 46888999999999999999999999999999
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
.|..+.|-+++++ ++|++.|++++||+.+.+-.+...
T Consensus 344 ~i~~i~F~~~g~r-FissSDdks~riWe~~~~v~ik~i------------------------------------------ 380 (503)
T KOG0282|consen 344 AILDITFVDEGRR-FISSSDDKSVRIWENRIPVPIKNI------------------------------------------ 380 (503)
T ss_pred heeeeEEccCCce-EeeeccCccEEEEEcCCCccchhh------------------------------------------
Confidence 9999999999985 789999999999998753211100
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce--eeeeeeEEec
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT--LVNFETVRLQ 349 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~--~~~~~~~~~~ 349 (441)
.....| ...+|..+|++.++++=+-|..|.++.+...-.. ...|+. ...
T Consensus 381 --------------------------~~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~v 431 (503)
T KOG0282|consen 381 --------------------------ADPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSV 431 (503)
T ss_pred --------------------------cchhhc--cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eec
Confidence 000122 2457899999999999999999999986532110 011211 223
Q ss_pred cCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCC-CeEEEeecCCcEEEeC
Q 013545 350 TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWC 419 (441)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~-~~l~s~s~D~~i~vW~ 419 (441)
.+-.+.+.++|||.+++++.. +.+..||-.+-+++..+.+|.+++..+.|+|.. ..+||||+||.|++|+
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 566789999999999999855 789999999999999999999999999999975 4588999999999996
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=253.93 Aligned_cols=290 Identities=21% Similarity=0.352 Sum_probs=229.1
Q ss_pred ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
+..++.||.+.|.|+++.|. +.+++|||.|++|+|||+.++... .+..||...|..+++++
T Consensus 143 l~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~Lk-----------------ltltGhi~~vr~vavS~- 203 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLK-----------------LTLTGHIETVRGVAVSK- 203 (460)
T ss_pred ehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEE-----------------Eeecchhheeeeeeecc-
Confidence 35678899999999999974 679999999999999999887421 23458988999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v 193 (441)
...++++++.|+.|+.||++..+.++.+.. -..++++..+|. ..+|++|+.|..++|||+++...+.++.||..+|
T Consensus 204 rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPT---ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V 280 (460)
T KOG0285|consen 204 RHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPT---LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV 280 (460)
T ss_pred cCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccc---ceeEEecCCcceEEEeeecccceEEEecCCCCcc
Confidence 567999999999999999999888876543 356888888874 3489999999999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
..|.+.|-++. ++|||.|++||+||++.++...+
T Consensus 281 ~~V~~~~~dpq-vit~S~D~tvrlWDl~agkt~~t--------------------------------------------- 314 (460)
T KOG0285|consen 281 ASVMCQPTDPQ-VITGSHDSTVRLWDLRAGKTMIT--------------------------------------------- 314 (460)
T ss_pred eeEEeecCCCc-eEEecCCceEEEeeeccCceeEe---------------------------------------------
Confidence 99999987775 68999999999999987654332
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
...|...|++++.+|.-..+||++.|. |+-|++..+.... .+..+....
T Consensus 315 --------------------------lt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~----nlsgh~~ii 363 (460)
T KOG0285|consen 315 --------------------------LTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQ----NLSGHNAII 363 (460)
T ss_pred --------------------------eecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhh----cccccccee
Confidence 234677899999999999999999996 9999998765321 112222333
Q ss_pred eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc--------cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG--------HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g--------h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
..++...| .++++++. +.+-.||-.+|-....+.. -+..|.+.+|...|..|+||..|.+|++|.-+.+.
T Consensus 364 ntl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 364 NTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred eeeeeccC-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence 44454444 45556555 5778899887754443311 13458999999999999999999999999765443
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=243.39 Aligned_cols=227 Identities=22% Similarity=0.423 Sum_probs=187.9
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--eeeeecCCCCCe
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTLSGHRDGI 193 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~~~~l~~h~~~v 193 (441)
-+|+|+|+|.|||+|...+|.+..+++++ +.+.++.++|+.. .||+++ .-.|++||+++++ ++.++.+|+..|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~---~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKK---DLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcc---hhhhcc-CCeeEEEEccCCCCCceeEEeccCCce
Confidence 37899999999999999999999999985 6799999999753 466554 4679999999875 578999999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
++|.|.-+|++ ++|||+||++||||+|...|.+.
T Consensus 87 taVgF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~--------------------------------------------- 120 (311)
T KOG0315|consen 87 TAVGFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRN--------------------------------------------- 120 (311)
T ss_pred EEEEEeecCeE-EEecCCCceEEEEeccCcccchh---------------------------------------------
Confidence 99999999987 79999999999999997443222
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
..|..+|++|..+|+...|++|..+|.|++||+......- ..+.......
T Consensus 121 ---------------------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~---~liPe~~~~i 170 (311)
T KOG0315|consen 121 ---------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH---ELIPEDDTSI 170 (311)
T ss_pred ---------------------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc---ccCCCCCcce
Confidence 1355789999999999999999999999999998653111 1111122334
Q ss_pred eEEEeeCCCcEEEEeCC-CceEEEEccCC------ceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545 354 IQLATTQDPAVVFVPCM-TAVKAFDIWSG------KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~------~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~ 423 (441)
..+...+||.+++.+.. +++.+|++-++ +++..|+.|.+.+..+.+|||+++|||+|+|.+++||+.++-
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 56788899998887765 78999998664 345679999999999999999999999999999999999876
No 16
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.4e-36 Score=263.21 Aligned_cols=323 Identities=16% Similarity=0.237 Sum_probs=242.1
Q ss_pred CCchhhhhhhhccccceecccceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEE
Q 013545 14 RPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFV 93 (441)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 93 (441)
++++|.+|+++.+|..+..+.|-.-+.||...|.||+-+|..-..++|||.||.|+|||+....+.
T Consensus 37 ~~rEy~RALNAtKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-------------- 102 (433)
T KOG0268|consen 37 RAREYTRALNATKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-------------- 102 (433)
T ss_pred hHHHHHHHhhhHHHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--------------
Confidence 568999999999999999888877779999999999999754356999999999999999765431
Q ss_pred eecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545 94 VDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173 (441)
Q Consensus 94 ~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~ 173 (441)
..+.+|.+-|..+++.. ..++|+|+|++|+.|.+.. .++.++-..+.+..+..+. ....+|+++. .|.
T Consensus 103 ---~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~---~~~~FaTcGe--~i~ 170 (433)
T KOG0268|consen 103 ---RTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHR---KNSVFATCGE--QID 170 (433)
T ss_pred ---heeecccCceeeEEecc---cceEEecCCcceeeeeccC-Ccceeeecccccccccccc---ccccccccCc--eee
Confidence 23458999999888854 6799999999999998764 3566665555444443322 2346777764 699
Q ss_pred EEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEe--ccCCccccCCCCcccccccccC
Q 013545 174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL--DQSQSQLGRRPPLLKRKSLSAG 251 (441)
Q Consensus 174 vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 251 (441)
|||.+...++..+.--.+.+.++.|+|.-..+|++|++|++|.+||+|.+..+..+ ....+
T Consensus 171 IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN----------------- 233 (433)
T KOG0268|consen 171 IWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN----------------- 233 (433)
T ss_pred ecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc-----------------
Confidence 99999999999999888999999999998889999999999999999987654321 11111
Q ss_pred ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccC----CCcccccccceeeccCeEEEEEccCCCEEEEeecCCc
Q 013545 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH----PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR 327 (441)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~ 327 (441)
.++..|.+-....++.+..++ ..+........+|.+.|++|+|||.|+.++|||.|++
T Consensus 234 ------------------~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 234 ------------------TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS 295 (433)
T ss_pred ------------------ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce
Confidence 111111111111111111110 1111122335678899999999999999999999999
Q ss_pred EEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEE
Q 013545 328 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY 407 (441)
Q Consensus 328 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~ 407 (441)
||||....+...- .+++.++ ..|.||.||.|.++++
T Consensus 296 IRIf~~~~~~SRd-iYhtkRM-------------------------------------------q~V~~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 296 IRIFPVNHGHSRD-IYHTKRM-------------------------------------------QHVFCVKYSMDSKYII 331 (433)
T ss_pred EEEeecCCCcchh-hhhHhhh-------------------------------------------heeeEEEEeccccEEE
Confidence 9999988664321 1222222 2399999999999999
Q ss_pred EeecCCcEEEeCCCCCCCCCccCCccCCcCCCCC
Q 013545 408 TGGNDRQILVWCPSRHISDGVDAGPMQDQDNWSD 441 (441)
Q Consensus 408 s~s~D~~i~vW~~~~~~~~~~~~~~~~~~~~~~~ 441 (441)
|||+|+.||+|........|++.-++++.++|++
T Consensus 332 SGSdd~nvRlWka~Aseklgv~t~rEk~~~~Y~e 365 (433)
T KOG0268|consen 332 SGSDDGNVRLWKAKASEKLGVITPREKNKLEYNE 365 (433)
T ss_pred ecCCCcceeeeecchhhhcCCCChhHHHHHHHHH
Confidence 9999999999999999999999999999999864
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.6e-33 Score=264.57 Aligned_cols=307 Identities=20% Similarity=0.293 Sum_probs=239.9
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCc--c------cC--------CCCceeccceeEEeecc-c
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT--D------YE--------GGGHIAKHRSVFVVDKQ-H 98 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~--~------~~--------~~~~~~~~~~~~~~~~~-~ 98 (441)
...+.||.+.|-++.|.. +..-+.|-|.||.+.+|-+...- . ++ ..+....++-.+..... .
T Consensus 182 ~~~l~gHkd~VvacfF~~-~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ 260 (893)
T KOG0291|consen 182 TYALNGHKDYVVACFFGA-NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHY 260 (893)
T ss_pred eEeccCCCcceEEEEecc-CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeee
Confidence 345779999999999984 56679999999999999765110 0 00 00000112222222212 1
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeC-CCcEEEEE
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTE-DVQVRLCD 176 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~-d~~I~vwd 176 (441)
.......|+++.|++ ...+||+|-..|...++++-...+++.+.+. .++..+.+...+ ..||.|+. =|++-||+
T Consensus 261 ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG---DWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG---DWIAFGCSKLGQLLVWE 336 (893)
T ss_pred ecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC---CEEEEcCCccceEEEEE
Confidence 222336688888876 5779999999999999999999999988876 556666666533 36776664 47999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256 (441)
Q Consensus 177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (441)
.++..++...+||...+.+++++|||+ ++|+|+.||.||+||++++-|+.++
T Consensus 337 WqsEsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTF--------------------------- 388 (893)
T KOG0291|consen 337 WQSESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTF--------------------------- 388 (893)
T ss_pred eeccceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEe---------------------------
Confidence 999999999999999999999999998 5799999999999999998887765
Q ss_pred CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
..|...|+.+.|+..|+.|+|.|-||+||.||+...
T Consensus 389 --------------------------------------------teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 389 --------------------------------------------TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred --------------------------------------------ccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 247778999999999999999999999999999987
Q ss_pred CceeeeeeeEEecc-CcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545 337 RNTLVNFETVRLQT-SKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR 413 (441)
Q Consensus 337 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~ 413 (441)
++ |.+..... -.-.+++..|.|.++..++. ..+.+|++.+|+++..|+||++||.+++|+|++..|+|+|+|.
T Consensus 425 rN----fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 425 RN----FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred ce----eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 64 33322111 12234667788888877766 4799999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCC
Q 013545 414 QILVWCPSRH 423 (441)
Q Consensus 414 ~i~vW~~~~~ 423 (441)
|||+|++-..
T Consensus 501 TVRiW~if~s 510 (893)
T KOG0291|consen 501 TVRIWDIFSS 510 (893)
T ss_pred eEEEEEeecc
Confidence 9999998655
No 18
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-34 Score=241.12 Aligned_cols=288 Identities=20% Similarity=0.276 Sum_probs=224.6
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+.||..+++-+.|+. +|++|.|++.|.++.+|-...++.+ .+..||+++|+|+.+.. +..
T Consensus 5 ~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerl-----------------Gty~GHtGavW~~Did~-~s~ 65 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERL-----------------GTYDGHTGAVWCCDIDW-DSK 65 (327)
T ss_pred ccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCcee-----------------eeecCCCceEEEEEecC-Ccc
Confidence 4679999999999984 7889999999999999976555432 23459999999999865 578
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC-----CCcEEEEECC-------CCceeee
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE-----DVQVRLCDIA-------SGAISQT 185 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~-----d~~I~vwdl~-------~~~~~~~ 185 (441)
+++||+.|.++++||+++|+++.+++.+..+..+.|++.+ ++++.... .+.|.++|++ ..++...
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~g---n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGG---NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCC---cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 9999999999999999999999999999999999998864 34443332 3469999997 3456777
Q ss_pred ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545 186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS 265 (441)
Q Consensus 186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (441)
+..+.+.++.+-|.|-++. +++|..||.|.+||++++..+..
T Consensus 143 I~t~~skit~a~Wg~l~~~-ii~Ghe~G~is~~da~~g~~~v~------------------------------------- 184 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGET-IIAGHEDGSISIYDARTGKELVD------------------------------------- 184 (327)
T ss_pred ecCCccceeeeeecccCCE-EEEecCCCcEEEEEcccCceeee-------------------------------------
Confidence 8888899999999999985 68999999999999997632110
Q ss_pred CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeee
Q 013545 266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET 345 (441)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~ 345 (441)
....|...|+.|+++||..+++++|.|.+.++||..+-.. ++.+.+
T Consensus 185 ---------------------------------s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v-~Kty~t 230 (327)
T KOG0643|consen 185 ---------------------------------SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV-LKTYTT 230 (327)
T ss_pred ---------------------------------chhhhccccccccccCCcceEEecccCccceeeeccceee-EEEeee
Confidence 0124667899999999999999999999999999987542 122221
Q ss_pred EEeccCcceEEEeeCCCcEEEEeCCCceE---------------EEEccCCceEeeecccccceEEEEEcCCCCeEEEee
Q 013545 346 VRLQTSKPIQLATTQDPAVVFVPCMTAVK---------------AFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG 410 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s 410 (441)
..+..+.+++|-...++.+++...+ .+++--.+....++||.+||++|+|+|||+..+||+
T Consensus 231 ----e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 231 ----ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred ----cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence 1234456777777777766553222 222222334557899999999999999999999999
Q ss_pred cCCcEEEeCCCCC
Q 013545 411 NDRQILVWCPSRH 423 (441)
Q Consensus 411 ~D~~i~vW~~~~~ 423 (441)
+||.||+.-.+..
T Consensus 307 EDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 307 EDGYVRLHHFDSN 319 (327)
T ss_pred CCceEEEEEeccc
Confidence 9999999865443
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.7e-35 Score=260.01 Aligned_cols=280 Identities=18% Similarity=0.329 Sum_probs=223.5
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
-.|+.+.|.| +|+.|++|+..|...+|+...... ..-.++|..+|.++.|++ ++..++||+
T Consensus 97 c~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnF-----------------EtilQaHDs~Vr~m~ws~-~g~wmiSgD 157 (464)
T KOG0284|consen 97 CPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNF-----------------ETILQAHDSPVRTMKWSH-NGTWMISGD 157 (464)
T ss_pred cceeeEEEcC-CCceeEeecccccEEEecCceeeH-----------------HHHhhhhcccceeEEEcc-CCCEEEEcC
Confidence 4799999996 688999999999999999743210 112358999999999997 788999999
Q ss_pred CCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545 124 YDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~ 202 (441)
.++.||+|+..-..+.....+. ..+.+++|+|. +..+++++.|+.|+|||....+.-..|+||.-.|.++.|+|..
T Consensus 158 ~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpn---DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k 234 (464)
T KOG0284|consen 158 KGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPN---DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK 234 (464)
T ss_pred CCceEEecccchhhhHHhhHhhhhhhheeccCCC---CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc
Confidence 9999999998654433222233 56888999983 3478999999999999999998888899999999999999986
Q ss_pred CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545 203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282 (441)
Q Consensus 203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (441)
. +++|+|.|+.|++||.+++.|+.++
T Consensus 235 g-LiasgskDnlVKlWDprSg~cl~tl----------------------------------------------------- 260 (464)
T KOG0284|consen 235 G-LIASGSKDNLVKLWDPRSGSCLATL----------------------------------------------------- 260 (464)
T ss_pred c-eeEEccCCceeEeecCCCcchhhhh-----------------------------------------------------
Confidence 4 7899999999999999998776543
Q ss_pred CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCC
Q 013545 283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362 (441)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (441)
.+|...|+++.|+|++++|+|+|.|..++++|+++.+..+ ..+.+......+.+.|-.
T Consensus 261 ------------------h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~----~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 261 ------------------HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF----TYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred ------------------hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH----Hhhcchhhheeecccccc
Confidence 3577889999999999999999999999999999654322 122233445556666654
Q ss_pred cEEEE-eCC-CceEEEEccCCceEeee-cccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 363 AVVFV-PCM-TAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 363 ~~~~~-~~~-~~~~~wd~~~~~~~~~l-~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
.-+++ ++. +.+..|.+...+++..+ .+|...|++++++|=|..|+||+.|+++|.|.-.
T Consensus 319 ~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 319 ESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 44444 333 57888888744544443 6899999999999999999999999999999754
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=268.24 Aligned_cols=274 Identities=19% Similarity=0.317 Sum_probs=207.1
Q ss_pred ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
|.....||...+++++++| ||+++|||+.||+|+|||...+.++ -++..|+.+|+.+.|..
T Consensus 342 YVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~-----------------vTFteHts~Vt~v~f~~- 402 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCF-----------------VTFTEHTSGVTAVQFTA- 402 (893)
T ss_pred eeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEE-----------------EEeccCCCceEEEEEEe-
Confidence 3334569999999999996 6889999999999999999877542 12447999999998876
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC-CcEEEEECCCCceeeeecCCCCCe
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED-VQVRLCDIASGAISQTLSGHRDGI 193 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d-~~I~vwdl~~~~~~~~l~~h~~~v 193 (441)
.+..++|.|.||+||.||+......+++..+.++.-.++..+. ++.++.+|+.| ..|+||+++||+++-.+.||.++|
T Consensus 403 ~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV 481 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV 481 (893)
T ss_pred cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence 6889999999999999999999999999988776555555443 34456666655 589999999999999999999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
.+++|+|.+. +|+|+|+|++||+||+-....
T Consensus 482 s~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~------------------------------------------------ 512 (893)
T KOG0291|consen 482 SGLSFSPDGS-LLASGSWDKTVRIWDIFSSSG------------------------------------------------ 512 (893)
T ss_pred eeeEEccccC-eEEeccccceEEEEEeeccCc------------------------------------------------
Confidence 9999999998 689999999999999742100
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
......+...+++++|+|||+.|++++-||.|.+||+..+... ..+...
T Consensus 513 -----------------------~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~----~~Idgr---- 561 (893)
T KOG0291|consen 513 -----------------------TVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV----GSIDGR---- 561 (893)
T ss_pred -----------------------eeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee----ccccch----
Confidence 0001234456899999999999999999999999999865321 111100
Q ss_pred eEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 354 IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
.-..++...--.+ -..-....+..+.+++|+||++|++||..+.|++++++++.+
T Consensus 562 ----------kD~~~gR~~~D~~-------ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 562 ----------KDLSGGRKETDRI-------TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred ----------hhcccccccccee-------ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence 0000000000000 001122346799999999999999999999999999986543
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3e-33 Score=238.63 Aligned_cols=250 Identities=20% Similarity=0.320 Sum_probs=196.2
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
-+-+.||+..|+.+..++ ++++.+|+|.|+++|+||+.+++.. +.+.||+..|.++++++ |
T Consensus 56 ~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t-----------------~~f~GH~~dVlsva~s~-d 116 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGEST-----------------RRFVGHTKDVLSVAFST-D 116 (315)
T ss_pred eeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCcEE-----------------EEEEecCCceEEEEecC-C
Confidence 345679999999999995 6889999999999999999877431 22358999999999987 6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v 193 (441)
..+++|||.|++|++|++........... .+-+.++.|+|.. ++.+|++++.|+.|++||+++.+....+.||.+-+
T Consensus 117 n~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~-~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 117 NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE-SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV 195 (315)
T ss_pred CceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC-CCcEEEEccCCceEEEEccCCcchhhccccccccE
Confidence 77999999999999999876554332222 3457888999964 46789999999999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
+.+++||||. ++++|+.||.+.+||++.++++..+
T Consensus 196 ~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lysl-------------------------------------------- 230 (315)
T KOG0279|consen 196 NTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYSL-------------------------------------------- 230 (315)
T ss_pred EEEEECCCCC-EEecCCCCceEEEEEccCCceeEec--------------------------------------------
Confidence 9999999997 6899999999999999987765543
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee---eeeeEEecc
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV---NFETVRLQT 350 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~---~~~~~~~~~ 350 (441)
.|...|.+++|+|+.-.|+.+. +..|+|||+++.+.... .+.......
T Consensus 231 ----------------------------~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~ 281 (315)
T KOG0279|consen 231 ----------------------------EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKA 281 (315)
T ss_pred ----------------------------cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccccccc
Confidence 3456799999999986666554 55599999998653211 000001111
Q ss_pred Ccc--eEEEeeCCCcEEEEe-CCCceEEEEcc
Q 013545 351 SKP--IQLATTQDPAVVFVP-CMTAVKAFDIW 379 (441)
Q Consensus 351 ~~~--~~~~~~~~~~~~~~~-~~~~~~~wd~~ 379 (441)
..+ ..+++++||..++.+ ....+++|.+.
T Consensus 282 ~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 282 GDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 223 457888999999887 44678998763
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=248.30 Aligned_cols=284 Identities=19% Similarity=0.297 Sum_probs=231.3
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
-+.||..+|+.+-|.|. .-..++++.|++|++||..+++.. ...+||+++|.++.+.. .|.
T Consensus 103 ~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e-----------------~~LrGHt~sv~di~~~a-~Gk 163 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELE-----------------RSLRGHTDSVFDISFDA-SGK 163 (406)
T ss_pred hhhccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhh-----------------hhhhccccceeEEEEec-Ccc
Confidence 35579999999999974 557899999999999999887531 34569999999999976 589
Q ss_pred EEEEEeCCCcEEEEECCC-CeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545 118 LFVTGSYDHYVKVWDTNC-TRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~ 195 (441)
++||+|.|-.+++||..+ .+++... .+...+.++.+-|.+ ..++|++.|.+|++|++.+|.+++++.+|...|..
T Consensus 164 ~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g---d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~ 240 (406)
T KOG0295|consen 164 YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG---DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRM 240 (406)
T ss_pred EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC---CeeeecccccceeEEecccceeEEeccCchHhEEE
Confidence 999999999999999875 3333322 233346677777764 57999999999999999999999999999999999
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
++.+.||. +++|||.|.++++|-+.+..|...+..+
T Consensus 241 v~v~~DGt-i~As~s~dqtl~vW~~~t~~~k~~lR~h------------------------------------------- 276 (406)
T KOG0295|consen 241 VRVNQDGT-IIASCSNDQTLRVWVVATKQCKAELREH------------------------------------------- 276 (406)
T ss_pred EEecCCee-EEEecCCCceEEEEEeccchhhhhhhcc-------------------------------------------
Confidence 99999986 7999999999999998876554333221
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEcc---------------CCCEEEEeecCCcEEEeeCCCCCcee
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE---------------DGMYLLSAGSDSRIRLWDVESGRNTL 340 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---------------dg~~l~sgs~D~~i~~wd~~~~~~~~ 340 (441)
+-+|-+++|-| .+.++++++.|++|++||+.++...+
T Consensus 277 ----------------------------Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~ 328 (406)
T KOG0295|consen 277 ----------------------------EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF 328 (406)
T ss_pred ----------------------------ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence 11111111111 34689999999999999999986432
Q ss_pred eeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 341 VNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
++..+.+....++++|.|.++++.+. .++++||+.++.+.+++..|+.-|+++.|..+--+++||+-|.++++|-
T Consensus 329 ----tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 329 ----TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ----EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 44556677888999999999998776 6999999999999999999999999999999999999999999999995
No 23
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.9e-32 Score=249.97 Aligned_cols=283 Identities=25% Similarity=0.469 Sum_probs=229.2
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
+.+|.+.|++++|+| ++++|++++.||.|++||+.+.... ....+|...+..+.+.+ ++++
T Consensus 5 ~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~-----------------~~~~~~~~~i~~~~~~~-~~~~ 65 (289)
T cd00200 5 LKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELL-----------------RTLKGHTGPVRDVAASA-DGTY 65 (289)
T ss_pred hcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcE-----------------EEEecCCcceeEEEECC-CCCE
Confidence 458999999999996 5779999999999999998754311 11236777888888887 5679
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~ 197 (441)
+++++.|+.|++||+.+++.+..+.. ...+..+.+.+. ..++++++.|+.|++||+.+++....+..|...+.++.
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD---GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCC---CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 99999999999999998776666654 346777777775 35777777799999999999998888999999999999
Q ss_pred EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 277 (441)
Q Consensus 198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
|+|++. ++++++.|+.|++||++.++....+
T Consensus 143 ~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~------------------------------------------------ 173 (289)
T cd00200 143 FSPDGT-FVASSSQDGTIKLWDLRTGKCVATL------------------------------------------------ 173 (289)
T ss_pred EcCcCC-EEEEEcCCCcEEEEEccccccceeE------------------------------------------------
Confidence 999876 5677777999999998754322211
Q ss_pred cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545 278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA 357 (441)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (441)
..|...+.+++|+|++..+++++.|+.|++||+.+++... ....+......+.
T Consensus 174 -----------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~----~~~~~~~~i~~~~ 226 (289)
T cd00200 174 -----------------------TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG----TLRGHENGVNSVA 226 (289)
T ss_pred -----------------------ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec----chhhcCCceEEEE
Confidence 2355678999999999999999999999999998754321 1112234556678
Q ss_pred eeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 358 TTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 358 ~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
+.+++.+++++. .+.+++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++|+
T Consensus 227 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 888877777776 68999999999999999999999999999999999999999999999996
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-32 Score=249.12 Aligned_cols=277 Identities=19% Similarity=0.340 Sum_probs=231.3
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
+.-|++|+|+ .+|.+||+|+.||.++||+...... .++..|+++|.++.|.. .|.+++|+
T Consensus 235 nkdVT~L~Wn-~~G~~LatG~~~G~~riw~~~G~l~------------------~tl~~HkgPI~slKWnk-~G~yilS~ 294 (524)
T KOG0273|consen 235 NKDVTSLDWN-NDGTLLATGSEDGEARIWNKDGNLI------------------STLGQHKGPIFSLKWNK-KGTYILSG 294 (524)
T ss_pred cCCcceEEec-CCCCeEEEeecCcEEEEEecCchhh------------------hhhhccCCceEEEEEcC-CCCEEEec
Confidence 3579999998 6789999999999999999753321 12347999999999986 68899999
Q ss_pred eCCCcEEEEECCCCeEEEEEecCCee-EEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKMPGKV-YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS 201 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~ 201 (441)
+-|+++.+||..++++...+.+.... .++.+.. +.-+++++.|+.|+|+-+....++.++.||.++|.++.|.|.
T Consensus 295 ~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~----~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t 370 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS----NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT 370 (524)
T ss_pred cCCccEEEEeccCceEEEeeeeccCCccceEEec----CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC
Confidence 99999999999999999888865443 4455543 346899999999999999988999999999999999999999
Q ss_pred CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
+. +|+|+|.|++++||.+....++..
T Consensus 371 g~-LLaS~SdD~TlkiWs~~~~~~~~~----------------------------------------------------- 396 (524)
T KOG0273|consen 371 GS-LLASCSDDGTLKIWSMGQSNSVHD----------------------------------------------------- 396 (524)
T ss_pred Cc-eEEEecCCCeeEeeecCCCcchhh-----------------------------------------------------
Confidence 87 789999999999999765433322
Q ss_pred CCCcccccCCCcccccccceeeccCeEEEEEccCC---------CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG---------MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352 (441)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg---------~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~ 352 (441)
+.+|...|..+.|+|+| ..+++++.|++|++||+..+... +.+..++..
T Consensus 397 ------------------l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----~~f~kH~~p 454 (524)
T KOG0273|consen 397 ------------------LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI----HTLMKHQEP 454 (524)
T ss_pred ------------------hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee----EeeccCCCc
Confidence 23566778888888865 46999999999999999988643 344445677
Q ss_pred ceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 353 PIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
...++++|++.+++++.. +.+.+|+..+++..+.+.+.. .|..|+|+.+|.+|..+-.|+.+++-|+
T Consensus 455 VysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~-~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 455 VYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG-GIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred eEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC-eEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 788999999999999876 679999999999999988664 4999999999999999999999988764
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.7e-33 Score=251.76 Aligned_cols=308 Identities=19% Similarity=0.288 Sum_probs=228.0
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCccc-CCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDY-EGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
++++ |..+|.+.+|+|.....+++|+.|-+.++|++...... .....+ +|. +... .........|+++.|+. +
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l-rh~-~~~~--~~s~~~nkdVT~L~Wn~-~ 246 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL-RHC-IREG--GKSVPSNKDVTSLDWNN-D 246 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh-hhh-hhhh--cccCCccCCcceEEecC-C
Confidence 3444 99999999999876658999999999999998641100 000000 000 0000 00012335799999987 7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~ 195 (441)
|..||+|+.||.+|||+.........-.+.+++.++.+.-. ..+|++++.|+++.+||..+|...+.+.-|..+-..
T Consensus 247 G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~---G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKK---GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALD 323 (524)
T ss_pred CCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCC---CCEEEeccCCccEEEEeccCceEEEeeeeccCCccc
Confidence 99999999999999999854443333345688988888764 458999999999999999999988888889888788
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
|.|-.+.+ |++++.|+.|+++-+.....
T Consensus 324 VdW~~~~~--F~ts~td~~i~V~kv~~~~P-------------------------------------------------- 351 (524)
T KOG0273|consen 324 VDWQSNDE--FATSSTDGCIHVCKVGEDRP-------------------------------------------------- 351 (524)
T ss_pred eEEecCce--EeecCCCceEEEEEecCCCc--------------------------------------------------
Confidence 89987754 79999999999998752110
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceE
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ 355 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 355 (441)
...+.+|.++|.+|.|.|.|.+|+|+|.|+|++||+...... ++.+..+...+..
T Consensus 352 ---------------------~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~----~~~l~~Hskei~t 406 (524)
T KOG0273|consen 352 ---------------------VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS----VHDLQAHSKEIYT 406 (524)
T ss_pred ---------------------ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc----hhhhhhhccceee
Confidence 012457999999999999999999999999999999764321 1111112222222
Q ss_pred EEeeC---------CCcEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 356 LATTQ---------DPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 356 ~~~~~---------~~~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
+.++| .+..++++ ...+|++||+..+.++++|..|..+|.+|+|||+|++||||+-|+.|.+|+..++++
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 22322 23344444 447999999999999999999999999999999999999999999999999999886
Q ss_pred CCccC
Q 013545 426 DGVDA 430 (441)
Q Consensus 426 ~~~~~ 430 (441)
-....
T Consensus 487 ~~s~~ 491 (524)
T KOG0273|consen 487 VKSYQ 491 (524)
T ss_pred eEeec
Confidence 54433
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=268.07 Aligned_cols=286 Identities=24% Similarity=0.441 Sum_probs=230.8
Q ss_pred CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 121 (441)
|...|.++.|++ +++++++++.|+.+++|+..+... . ......+|...|.+++|++ ++.++++
T Consensus 158 ~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~-~--------------~~~~l~~h~~~v~~~~fs~-d~~~l~s 220 (456)
T KOG0266|consen 158 ECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKS-N--------------LLRELSGHTRGVSDVAFSP-DGSYLLS 220 (456)
T ss_pred ccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccc-h--------------hhccccccccceeeeEECC-CCcEEEE
Confidence 478999999996 578899999999999999854431 0 0122258999999999998 7889999
Q ss_pred EeCCCcEEEEEC-CCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEe
Q 013545 122 GSYDHYVKVWDT-NCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199 (441)
Q Consensus 122 gs~D~~i~iWd~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fs 199 (441)
++.|++|||||+ ..+..++++. +...++++.|++.+ .++++|+.|++|++||++++++...+.+|.+.|++++|+
T Consensus 221 ~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g---~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 221 GSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG---NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred ecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC---CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 999999999999 4557777775 45678899999865 589999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeecCCcEEEEEcCCCc--eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545 200 TSSEWILVTGGCDGAIRFWDIRRAG--CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 277 (441)
Q Consensus 200 p~~~~~l~s~s~Dg~I~iWD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
+++. +|++++.|+.|++||+.++. |...+..
T Consensus 298 ~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~---------------------------------------------- 330 (456)
T KOG0266|consen 298 PDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSG---------------------------------------------- 330 (456)
T ss_pred CCCC-EEEEcCCCccEEEEECCCCceeeeecccC----------------------------------------------
Confidence 9998 57888999999999998764 2221100
Q ss_pred cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc---ce
Q 013545 278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK---PI 354 (441)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~---~~ 354 (441)
..... +++.++|+|++.++++++.|+++++||+.+++.... ...+... ..
T Consensus 331 ----------------------~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~----~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 331 ----------------------AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT----YTGHSNLVRCIF 383 (456)
T ss_pred ----------------------CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee----ecccCCcceeEe
Confidence 00112 589999999999999999999999999997753221 1111121 11
Q ss_pred EEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccc-ccceEEEEEcCCCCeEEEee--cCCcEEEeCCC
Q 013545 355 QLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH-YEYVNCCCFSSQDQELYTGG--NDRQILVWCPS 421 (441)
Q Consensus 355 ~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh-~~~v~~v~fspd~~~l~s~s--~D~~i~vW~~~ 421 (441)
.....+.+..++++.. ..+.+|++.++..+..+.+| ...+..++++|...++++++ .|+.|++|..+
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 2333567778877765 68999999999999999999 99999999999999999988 79999999764
No 27
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-33 Score=249.33 Aligned_cols=293 Identities=20% Similarity=0.329 Sum_probs=224.2
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
-.++..|..+|+-+.||+ +|+||||||.|.+.-||++.....+. -..+..||..+|.-+.|+| |
T Consensus 217 ~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~k--------------l~~tlvgh~~~V~yi~wSP-D 280 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFK--------------LKKTLVGHSQPVSYIMWSP-D 280 (519)
T ss_pred hhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCccee--------------eeeeeecccCceEEEEECC-C
Confidence 456778999999999995 79999999999999999986443211 1234568999999999998 6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC-CC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-DG 192 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~-~~ 192 (441)
..+|++|+.|..+++||+.+|...+.++.. -.+.++++.|++. -+++|+.|..|..||+... .+...++-. ..
T Consensus 281 dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~---~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~ 356 (519)
T KOG0293|consen 281 DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF---RFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPK 356 (519)
T ss_pred CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCc---eeEecCCCCcEEEecCCcc-hhhcccccccce
Confidence 679999999999999999999988877654 4577888998765 5889999999999999644 344444433 45
Q ss_pred eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (441)
|.+++..+||+++ ++...|..|++++.....+..
T Consensus 357 v~dlait~Dgk~v-l~v~~d~~i~l~~~e~~~dr~--------------------------------------------- 390 (519)
T KOG0293|consen 357 VHDLAITYDGKYV-LLVTVDKKIRLYNREARVDRG--------------------------------------------- 390 (519)
T ss_pred eEEEEEcCCCcEE-EEEecccceeeechhhhhhhc---------------------------------------------
Confidence 8999999999986 456689999999875321100
Q ss_pred ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352 (441)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~ 352 (441)
......+|++.++|.|++++++.=.+..+++||++..+... .+...+ +..-
T Consensus 391 ---------------------------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~-kY~Ghk-q~~f 441 (519)
T KOG0293|consen 391 ---------------------------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVR-KYFGHK-QGHF 441 (519)
T ss_pred ---------------------------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHH-Hhhccc-ccce
Confidence 01123569999999999999999999999999998443211 111111 1122
Q ss_pred ceEEEeeC-CCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCC-CeEEEeecCCcEEEeCCCCC
Q 013545 353 PIQLATTQ-DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 353 ~~~~~~~~-~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~-~~l~s~s~D~~i~vW~~~~~ 423 (441)
.+..+|.. +...+++++. ..+.+|+..+|+++.+|+||.+.|+||+|+|.. .++||||+||+||||.+...
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 33334433 3355666654 589999999999999999999999999999976 55899999999999988654
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.2e-33 Score=268.92 Aligned_cols=208 Identities=26% Similarity=0.489 Sum_probs=179.4
Q ss_pred ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
..+.+.||.++|+.+.|+| +.++|+|+|.|+++|+|.+.+.... +. ..||..+|+++.|.|
T Consensus 443 ~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~-------------V~----y~GH~~PVwdV~F~P- 503 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCL-------------VI----YKGHLAPVWDVQFAP- 503 (707)
T ss_pred eeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeE-------------EE----ecCCCcceeeEEecC-
Confidence 3556889999999999997 5789999999999999999876531 11 248999999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v 193 (441)
.|-+|||||.|++.++|......+++.+.. .+.+.++.|+|. ..++|+||.|.+|++||+.+|..++.|.||.++|
T Consensus 504 ~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPN---s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V 580 (707)
T KOG0263|consen 504 RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN---SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV 580 (707)
T ss_pred CceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCc---ccccccCCCCceEEEEEcCCCcEEEEecCCCCce
Confidence 688999999999999999887777666543 356788889985 4599999999999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
.+++|||+|++ |+||+.||.|++||+.+++.+.
T Consensus 581 ~al~~Sp~Gr~-LaSg~ed~~I~iWDl~~~~~v~---------------------------------------------- 613 (707)
T KOG0263|consen 581 TALAFSPCGRY-LASGDEDGLIKIWDLANGSLVK---------------------------------------------- 613 (707)
T ss_pred EEEEEcCCCce-EeecccCCcEEEEEcCCCcchh----------------------------------------------
Confidence 99999999985 7999999999999998653211
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
.+.+|.+.|.+|.||.||..||+||.|.+|++||+...
T Consensus 614 -------------------------~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 614 -------------------------QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred -------------------------hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 13468889999999999999999999999999999764
No 29
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.6e-33 Score=243.80 Aligned_cols=250 Identities=23% Similarity=0.384 Sum_probs=211.6
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
..||.+-|.|+++-|. .+.|+||+.|++|+|||+.++++..++. +-..+..+++++. ..++.+++.|+.|+-|||
T Consensus 147 i~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r---HpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR---HPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc---CceEEEecCCCeeEEEec
Confidence 4599999999999884 6799999999999999999999887776 4456777787764 458999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
+..+.++.+-||-+.|.|++.+|.-+ +|+||+.|.++|+||+|+...+.+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~----------------------------- 272 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHV----------------------------- 272 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEE-----------------------------
Confidence 99999999999999999999999876 689999999999999996432221
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
+.+|..+|.+|.+-|....++|||-|++|++||+..++
T Consensus 273 ------------------------------------------l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk 310 (460)
T KOG0285|consen 273 ------------------------------------------LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK 310 (460)
T ss_pred ------------------------------------------ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc
Confidence 35789999999999999999999999999999999887
Q ss_pred ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEE
Q 013545 338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV 417 (441)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~v 417 (441)
.....++ +-.....++..|.-..+++++...++.|++-.|..+..+++|..-|++++.+.|| .+++|++.|.+..
T Consensus 311 t~~tlt~----hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~f 385 (460)
T KOG0285|consen 311 TMITLTH----HKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMF 385 (460)
T ss_pred eeEeeec----ccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEE
Confidence 4332221 2223445666777666777778899999999999999999999999999999886 8889999999999
Q ss_pred eCCCCCCCCCcc
Q 013545 418 WCPSRHISDGVD 429 (441)
Q Consensus 418 W~~~~~~~~~~~ 429 (441)
||..++.--+..
T Consensus 386 wdwksg~nyQ~~ 397 (460)
T KOG0285|consen 386 WDWKSGHNYQRG 397 (460)
T ss_pred EecCcCcccccc
Confidence 999988754444
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.1e-31 Score=277.49 Aligned_cols=295 Identities=16% Similarity=0.286 Sum_probs=221.7
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
.+|.+.|++++|+| ++++||||+.|++|+|||+........ ..+..+... .+...|.++.|.+.++.+|
T Consensus 480 ~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~----~~~~~~~~~------~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 480 LNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGR----DIHYPVVEL------ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred cCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCccccccc----ccccceEEe------cccCceeeEEeccCCCCEE
Confidence 45899999999996 578999999999999999764211000 001111111 2345788899988778899
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545 120 VTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f 198 (441)
|+++.|++|++||+.+++.+..+. +.+.+.++.+++. +..+|++|+.|+.|++||+.++..+..+..+ ..|.++.|
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~--~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~ 625 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA--DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQF 625 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC--CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEE
Confidence 999999999999999988877775 4567889998863 2358999999999999999999988888755 67999999
Q ss_pred ecCCCcEEEEeecCCcEEEEEcCCCce-eeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545 199 STSSEWILVTGGCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 277 (441)
Q Consensus 199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
++++...|++|+.||+|++||++..+. ..
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~-------------------------------------------------- 655 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPKLPLC-------------------------------------------------- 655 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCccce--------------------------------------------------
Confidence 654334689999999999999875320 00
Q ss_pred cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce--eeeeeeEEeccCcceE
Q 013545 278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT--LVNFETVRLQTSKPIQ 355 (441)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~ 355 (441)
...+|...|.++.|. ++.+|++++.|++|++||+...... .........+......
T Consensus 656 ---------------------~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 656 ---------------------TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred ---------------------EecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 123577889999997 7889999999999999999753210 0112222333444556
Q ss_pred EEeeCCCcEEEEeCC-CceEEEEccCCceEe-------------eecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 356 LATTQDPAVVFVPCM-TAVKAFDIWSGKTCL-------------TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 356 ~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~-------------~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
+.+++++.++++++. +.+++|+........ .+..|...|.+++|+|++..|++|+.||+|+||++
T Consensus 714 v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 714 VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 788888888888765 689999976543321 12346677999999999999999999999999985
No 31
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-33 Score=235.15 Aligned_cols=288 Identities=22% Similarity=0.335 Sum_probs=227.5
Q ss_pred ecCCCCceeEEEccCC--CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 39 VSPHKGSINSLQVDLT--EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
-.||+.+|..|+|||- +|-+|+|++.||.-.+-+-+++.=. .++.||+++|++..... +.
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi-----------------gtfeghkgavw~~~l~~-na 71 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI-----------------GTFEGHKGAVWSATLNK-NA 71 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE-----------------EeeeccCcceeeeecCc-hh
Confidence 4599999999999854 4668999999999888776665311 24569999999877754 56
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeeecCCCCCeEE
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMT 195 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~h~~~v~~ 195 (441)
.+.||++.|.+-++||.-+|..++.+.+...+..++|+.+. ..|++|+.+.-++|||++..+ +.+.+.+|++.|..
T Consensus 72 ~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds---~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~ 148 (334)
T KOG0278|consen 72 TRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDS---NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRT 148 (334)
T ss_pred hhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccc---hhhhccchHHHhhhhhccCCCCCchhhcCCCCccee
Confidence 67899999999999999999999999888788888888764 468899999999999998875 56889999999999
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
+.|....+. ++|++.|++||+||.+++...+.++.
T Consensus 149 v~wc~eD~~-iLSSadd~tVRLWD~rTgt~v~sL~~-------------------------------------------- 183 (334)
T KOG0278|consen 149 VLWCHEDKC-ILSSADDKTVRLWDHRTGTEVQSLEF-------------------------------------------- 183 (334)
T ss_pred EEEeccCce-EEeeccCCceEEEEeccCcEEEEEec--------------------------------------------
Confidence 999988876 56779999999999998865554421
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceE
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ 355 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 355 (441)
..+|+++-++++|.+|. ....+.|++||..+-.. +....+. -....
T Consensus 184 ----------------------------~s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~----lKs~k~P-~nV~S 229 (334)
T KOG0278|consen 184 ----------------------------NSPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGL----LKSYKMP-CNVES 229 (334)
T ss_pred ----------------------------CCCCcceeeccCCCEEE-EecCceeEEeccccccc----eeeccCc-ccccc
Confidence 24588999999997765 45677899999876432 1111111 11223
Q ss_pred EEeeCCCcEEEEeCC-CceEEEEccCCceEeee-cccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 356 LATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 356 ~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l-~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
.+..|+....+.++. .-+..||..+|.....+ +||.++|.||.|||||...++||+||+||||...-++.-
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 456677755544443 46888999999999887 999999999999999999999999999999987655433
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.8e-31 Score=222.43 Aligned_cols=288 Identities=19% Similarity=0.294 Sum_probs=213.4
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
..+.+|.+.|+.++++|.-|..|+|+|.|++||||++..+..+. .+ .++ ..+|+..|.+++|+| .+
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~-------ck--~vl----d~~hkrsVRsvAwsp-~g 73 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWT-------CK--TVL----DDGHKRSVRSVAWSP-HG 73 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEE-------EE--Eec----cccchheeeeeeecC-CC
Confidence 45679999999999997436789999999999999987433221 11 111 238999999999998 68
Q ss_pred CEEEEEeCCCcEEEEECCCCeE--EEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC---ceeeeecCCC
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRV--VMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG---AISQTLSGHR 190 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~---~~~~~l~~h~ 190 (441)
++||+||.|.++-||.-..+.. +..+. ++..+-++++++. ..+||+++-|.+|-+|.+..+ +++..|++|+
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s---G~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS---GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC---CCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence 8999999999999998765554 33333 2345778888875 459999999999999999754 4678899999
Q ss_pred CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG 270 (441)
Q Consensus 191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (441)
..|--+.|+|... +|+|+|-|++||+|+-..+...
T Consensus 151 qDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW-------------------------------------------- 185 (312)
T KOG0645|consen 151 QDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDW-------------------------------------------- 185 (312)
T ss_pred ccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCe--------------------------------------------
Confidence 9999999999765 7899999999999975421100
Q ss_pred ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 350 (441)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~ 350 (441)
.....+.+|.+.|.+++|++.|..|++++.|++++||-.-+.- ...+
T Consensus 186 ------------------------~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---------~~~~ 232 (312)
T KOG0645|consen 186 ------------------------ECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---------SGMH 232 (312)
T ss_pred ------------------------eEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---------chhc
Confidence 0011234677889999999999999999999999999744211 0111
Q ss_pred C-cceEEEeeCCCcEEEEe-CCCceEEEEccCCc------e-EeeecccccceEEEEEcCC-CCeEEEeecCCcEEEeCC
Q 013545 351 S-KPIQLATTQDPAVVFVP-CMTAVKAFDIWSGK------T-CLTFRGHYEYVNCCCFSSQ-DQELYTGGNDRQILVWCP 420 (441)
Q Consensus 351 ~-~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~------~-~~~l~gh~~~v~~v~fspd-~~~l~s~s~D~~i~vW~~ 420 (441)
+ ....++.. + ..+.++ +...+++|.....- + .+.-..|...|++|+|+|. ...|+|||.||+|++|..
T Consensus 233 sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 233 SRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 1 11223444 3 334444 44688888765431 1 1133578899999999995 678999999999999976
Q ss_pred C
Q 013545 421 S 421 (441)
Q Consensus 421 ~ 421 (441)
.
T Consensus 311 ~ 311 (312)
T KOG0645|consen 311 E 311 (312)
T ss_pred c
Confidence 3
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=247.63 Aligned_cols=234 Identities=26% Similarity=0.470 Sum_probs=189.5
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
...|+|++++ ++ .++||..|.||+|||..+.... ....||++.|.|+.+ +..+++||
T Consensus 197 skgVYClQYD--D~-kiVSGlrDnTikiWD~n~~~c~-----------------~~L~GHtGSVLCLqy---d~rviisG 253 (499)
T KOG0281|consen 197 SKGVYCLQYD--DE-KIVSGLRDNTIKIWDKNSLECL-----------------KILTGHTGSVLCLQY---DERVIVSG 253 (499)
T ss_pred CCceEEEEec--ch-hhhcccccCceEEeccccHHHH-----------------HhhhcCCCcEEeeec---cceEEEec
Confidence 4789999995 34 5999999999999998765431 234699999999988 45699999
Q ss_pred eCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc---eeeeecCCCCCeEEEEE
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHRDGIMTVEW 198 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~---~~~~l~~h~~~v~~v~f 198 (441)
|.|.||++||+++++++.++-++ ..+.-+.|+ +.++++++.|.+|.+||+.... +.+.+.||...|..|.|
T Consensus 254 SSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf 328 (499)
T KOG0281|consen 254 SSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 328 (499)
T ss_pred CCCceEEEEeccCCchhhHHhhhcceeEEEEEe-----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc
Confidence 99999999999999998765443 334444444 3478999999999999998764 34678899999999999
Q ss_pred ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccc
Q 013545 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR 278 (441)
Q Consensus 199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (441)
+. + +++|+|.|.+||+|++.++.+++++
T Consensus 329 d~--k-yIVsASgDRTikvW~~st~efvRtl------------------------------------------------- 356 (499)
T KOG0281|consen 329 DD--K-YIVSASGDRTIKVWSTSTCEFVRTL------------------------------------------------- 356 (499)
T ss_pred cc--c-eEEEecCCceEEEEeccceeeehhh-------------------------------------------------
Confidence 64 4 5799999999999999987766554
Q ss_pred ccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEe
Q 013545 279 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT 358 (441)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (441)
.+|...|.++.+ .|++++|||.|.+||+||++.|
T Consensus 357 ----------------------~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---------------------- 390 (499)
T KOG0281|consen 357 ----------------------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---------------------- 390 (499)
T ss_pred ----------------------hcccccceehhc--cCeEEEecCCCceEEEEecccc----------------------
Confidence 245555666554 6889999999999999998754
Q ss_pred eCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCC
Q 013545 359 TQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDG 427 (441)
Q Consensus 359 ~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~ 427 (441)
+++..|.||+.-|.|+.|. .+.++||+-||+|+|||..+....+
T Consensus 391 -----------------------~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 391 -----------------------ACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPR 434 (499)
T ss_pred -----------------------HHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCc
Confidence 4556788999999999986 5899999999999999998776543
No 34
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-30 Score=239.21 Aligned_cols=299 Identities=18% Similarity=0.289 Sum_probs=227.9
Q ss_pred ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
...+++.|...|+-..|+|. |-|++||...|+|||||....+ ++ +. ....--.++|..+.|..
T Consensus 51 ~~~iYtEH~~~vtVAkySPs-G~yiASGD~sG~vRIWdtt~~~------hi------LK---nef~v~aG~I~Di~Wd~- 113 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPS-GFYIASGDVSGKVRIWDTTQKE------HI------LK---NEFQVLAGPIKDISWDF- 113 (603)
T ss_pred ceeeeccccceeEEEEeCCC-ceEEeecCCcCcEEEEeccCcc------ee------ee---eeeeecccccccceeCC-
Confidence 35678899999999999985 7799999999999999975322 11 11 11223446788999987
Q ss_pred CCCEEEEEeC--C--CcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC
Q 013545 115 DTGLFVTGSY--D--HYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH 189 (441)
Q Consensus 115 ~~~~l~sgs~--D--~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h 189 (441)
|+.+++..|+ + +.+.+||. |.-+..+..+ ..+.++.+.|. ....+++|+.|+.|.+|+=..-+...+++.|
T Consensus 114 ds~RI~avGEGrerfg~~F~~DS--G~SvGei~GhSr~ins~~~Kps--RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~H 189 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWDS--GNSVGEITGHSRRINSVDFKPS--RPFRIATGSDDNTVAFFEGPPFKFKSSFREH 189 (603)
T ss_pred CCcEEEEEecCccceeEEEEecC--CCccceeeccceeEeeeeccCC--CceEEEeccCCCeEEEeeCCCeeeeeccccc
Confidence 6777766554 3 34666774 4444444433 34666777664 3468999999999999998777778889999
Q ss_pred CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN 269 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (441)
..-|.|+.|+|||+ +|+|.+.||+|.+||=.++..+..++.
T Consensus 190 skFV~~VRysPDG~-~Fat~gsDgki~iyDGktge~vg~l~~-------------------------------------- 230 (603)
T KOG0318|consen 190 SKFVNCVRYSPDGS-RFATAGSDGKIYIYDGKTGEKVGELED-------------------------------------- 230 (603)
T ss_pred ccceeeEEECCCCC-eEEEecCCccEEEEcCCCccEEEEecC--------------------------------------
Confidence 99999999999998 589999999999999776654333321
Q ss_pred CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEec
Q 013545 270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 349 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~ 349 (441)
..+|.+.|.+|+|+||++.++|.|+|+++||||+.+.+... +..+.
T Consensus 231 ------------------------------~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~----t~~~~ 276 (603)
T KOG0318|consen 231 ------------------------------SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS----TWPMG 276 (603)
T ss_pred ------------------------------CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE----EeecC
Confidence 13689999999999999999999999999999999875321 21211
Q ss_pred c---CcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 350 T---SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 350 ~---~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
. +..+-+.+. ...++.+...+.+..++....+.+.++.||.+.|++++.+||+++|+||+.||.|.-|+..++..+
T Consensus 277 ~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 277 STVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 1 112222333 344444555688999999999999999999999999999999999999999999999999999988
Q ss_pred Cc
Q 013545 427 GV 428 (441)
Q Consensus 427 ~~ 428 (441)
.+
T Consensus 356 ~~ 357 (603)
T KOG0318|consen 356 RL 357 (603)
T ss_pred cc
Confidence 54
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-31 Score=255.37 Aligned_cols=284 Identities=19% Similarity=0.266 Sum_probs=228.6
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
.|-.++|..++|-.++.++|+.+++.+.+|+|++.+.... -..||+..|.++..+. +|.+|
T Consensus 320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~------------------ii~GH~e~vlSL~~~~-~g~ll 380 (775)
T KOG0319|consen 320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ------------------IIPGHTEAVLSLDVWS-SGDLL 380 (775)
T ss_pred cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE------------------EEeCchhheeeeeecc-cCcEE
Confidence 4677999999987666789999999999999988765431 1248999999998554 56899
Q ss_pred EEEeCCCcEEEEECCCCeE----EEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-----ee----e
Q 013545 120 VTGSYDHYVKVWDTNCTRV----VMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-----SQ----T 185 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-----~~----~ 185 (441)
+|||.|+++++|.++.+.. +.... +.+.+..++++.. +...|+++|.|.++++|++...+. .. +
T Consensus 381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~--~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL--GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred EEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc--CccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 9999999999998844332 22222 3345666666443 345899999999999999976321 11 3
Q ss_pred ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545 186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS 265 (441)
Q Consensus 186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (441)
...|...|.||+++|+++ +++|||.|++.+||++.......
T Consensus 459 ~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~l~~-------------------------------------- 499 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLRLLG-------------------------------------- 499 (775)
T ss_pred HHhhcccccceEecCCCc-eEEecccccceeeecccCceEEE--------------------------------------
Confidence 357999999999999987 78999999999999987432222
Q ss_pred CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeee
Q 013545 266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET 345 (441)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~ 345 (441)
.+.+|...|.+|.|+|..+.++|+|.|+||+||.+++.. ...+
T Consensus 500 ---------------------------------vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS----ClkT 542 (775)
T KOG0319|consen 500 ---------------------------------VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS----CLKT 542 (775)
T ss_pred ---------------------------------EeeCCccceEEEEeccccceeEeccCCceEEEEEeccce----eeee
Confidence 235788889999999999999999999999999998754 2345
Q ss_pred EEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 346 VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
+..+......+.|..+++.+++++. +-+|+|++.++++..++.+|++.||.++.+|++.+++||+.|+.|.+|.-
T Consensus 543 ~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 543 FEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred ecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 5556667778888888888887765 67899999999999999999999999999999999999999999999943
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.6e-33 Score=243.93 Aligned_cols=254 Identities=26% Similarity=0.449 Sum_probs=197.7
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
.++.||+|+|.||+|. .+.|+|||.|.||+|||+++++... +.-+|..+|..+.|+ .
T Consensus 231 ~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~-----------------tlihHceaVLhlrf~---n 287 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLN-----------------TLIHHCEAVLHLRFS---N 287 (499)
T ss_pred HhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhh-----------------HHhhhcceeEEEEEe---C
Confidence 3577999999999995 4699999999999999999887531 223788889888885 4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEe-cCC---eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCC
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG 192 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~ 192 (441)
.+++|+|.|++|++||+....-+.... +-| .+..+.| +..++++++.|.+|++|++.++++++++.||.-.
T Consensus 288 g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf-----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRG 362 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG 362 (499)
T ss_pred CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc-----ccceEEEecCCceEEEEeccceeeehhhhccccc
Confidence 599999999999999987654221100 112 2333333 3358999999999999999999999999999999
Q ss_pred eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (441)
|-|+.+. ++ +++|||.|.+||+||+..|.|++++
T Consensus 363 IAClQYr--~r-lvVSGSSDntIRlwdi~~G~cLRvL------------------------------------------- 396 (499)
T KOG0281|consen 363 IACLQYR--DR-LVVSGSSDNTIRLWDIECGACLRVL------------------------------------------- 396 (499)
T ss_pred ceehhcc--Ce-EEEecCCCceEEEEeccccHHHHHH-------------------------------------------
Confidence 9999985 34 7899999999999999999887765
Q ss_pred ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352 (441)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~ 352 (441)
.+|+.-|.++.| |.+.|+||+.||+|++||+..+......
T Consensus 397 ----------------------------eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~---------- 436 (499)
T KOG0281|consen 397 ----------------------------EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAP---------- 436 (499)
T ss_pred ----------------------------hchHHhhhheee--cCceeeeccccceEEEEecccccCCccc----------
Confidence 357777899999 4678999999999999999865321100
Q ss_pred ceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccCCc
Q 013545 353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGP 432 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~~ 432 (441)
. +--++.++.-|.+.|..+.|. ...+++++.|.+|.|||.-.+....-..++
T Consensus 437 --------~------------------~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~~~~~~r 488 (499)
T KOG0281|consen 437 --------A------------------STLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPSAAEETR 488 (499)
T ss_pred --------c------------------cchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCccccccCC
Confidence 0 012344566799999999885 578999999999999998776655444444
No 37
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3e-30 Score=221.64 Aligned_cols=255 Identities=24% Similarity=0.366 Sum_probs=217.2
Q ss_pred ccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545 97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLC 175 (441)
Q Consensus 97 ~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d~~I~vw 175 (441)
..++||...|.++-|.+ |..+++|+|.||.+.|||.-+...++-++++.. +..++++|. ...+|.|+.|+.+.||
T Consensus 49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS---g~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS---GNFVACGGLDNKCSIY 124 (343)
T ss_pred EEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC---CCeEEecCcCceeEEE
Confidence 45679999999999987 788999999999999999998888888888754 788888885 4589999999999999
Q ss_pred ECCCC------ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccc
Q 013545 176 DIASG------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLS 249 (441)
Q Consensus 176 dl~~~------~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (441)
++.+. +..+.+.+|++-+.|..|-+|+. |+|+|.|.++.+||++++.....
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~--------------------- 181 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQV--------------------- 181 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEE---------------------
Confidence 99865 23467899999999999999764 67999999999999998754332
Q ss_pred cCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcE
Q 013545 250 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRI 328 (441)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i 328 (441)
+.+|.+.|.+|+++| +++.++||+-|++.
T Consensus 182 --------------------------------------------------f~GH~gDV~slsl~p~~~ntFvSg~cD~~a 211 (343)
T KOG0286|consen 182 --------------------------------------------------FHGHTGDVMSLSLSPSDGNTFVSGGCDKSA 211 (343)
T ss_pred --------------------------------------------------ecCCcccEEEEecCCCCCCeEEecccccce
Confidence 347899999999999 99999999999999
Q ss_pred EEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccc--ccceEEEEEcCCCCe
Q 013545 329 RLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH--YEYVNCCCFSSQDQE 405 (441)
Q Consensus 329 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh--~~~v~~v~fspd~~~ 405 (441)
++||++.+... .++..+...+..+.+.|+|.-+++++. .++|+||+.....+..+... ..+|++|+||..|++
T Consensus 212 klWD~R~~~c~----qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl 287 (343)
T KOG0286|consen 212 KLWDVRSGQCV----QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL 287 (343)
T ss_pred eeeeccCccee----EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE
Confidence 99999987532 233445677788999999998888877 58999999998888877632 357999999999999
Q ss_pred EEEeecCCcEEEeCCCCCCCCCccCCc
Q 013545 406 LYTGGNDRQILVWCPSRHISDGVDAGP 432 (441)
Q Consensus 406 l~s~s~D~~i~vW~~~~~~~~~~~~~~ 432 (441)
|++|..|.++.+||.=.+...+++.|-
T Consensus 288 Lfagy~d~~c~vWDtlk~e~vg~L~GH 314 (343)
T KOG0286|consen 288 LFAGYDDFTCNVWDTLKGERVGVLAGH 314 (343)
T ss_pred EEeeecCCceeEeeccccceEEEeecc
Confidence 999999999999999888877777664
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.9e-31 Score=250.52 Aligned_cols=359 Identities=17% Similarity=0.240 Sum_probs=242.5
Q ss_pred hccccceecccceeeecCCCCceeEEEccCCCCc-EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCc
Q 013545 24 SHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEER-YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGH 102 (441)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 102 (441)
..++..+....-...+.||.|.|.++.|.|.... .|++|+.|+++++||+.+...- ......|
T Consensus 128 ~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc----------------l~~~~~H 191 (775)
T KOG0319|consen 128 RVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTC----------------LHTMILH 191 (775)
T ss_pred eEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchH----------------HHHHHhh
Confidence 3355555444345568899999999999986543 5899999999999999754320 0123479
Q ss_pred ccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEE-------------------------------
Q 013545 103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRT------------------------------- 151 (441)
Q Consensus 103 ~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~------------------------------- 151 (441)
...|+++.+.+ |+..++++|+|+.+.+||+.+.+.+.+.+....+-.+
T Consensus 192 ~S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~ 270 (775)
T KOG0319|consen 192 KSAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG 270 (775)
T ss_pred hhheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccc
Confidence 99999999987 6889999999999999998654432222110000000
Q ss_pred ---------------------------------------------------------eeccCCCCccEEEEEeCCCcEEE
Q 013545 152 ---------------------------------------------------------AMSPLAASHMLIAAGTEDVQVRL 174 (441)
Q Consensus 152 ---------------------------------------------------------~~~~~~~~~~~las~s~d~~I~v 174 (441)
.+...++....||+++....+|+
T Consensus 271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRL 350 (775)
T ss_pred hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence 00011122245777777778888
Q ss_pred EECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceee----EeccCCccccCCCCccccccccc
Q 013545 175 CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR----VLDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 175 wdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
|++.+..+. .+.||.+.|.++....+| .+|+|||.|+++++|.++.+.+.. ....+...++..
T Consensus 351 y~~~~~~c~-ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgav----------- 417 (775)
T KOG0319|consen 351 YTLPTSYCQ-IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAV----------- 417 (775)
T ss_pred EecCCCceE-EEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhccccccccee-----------
Confidence 887776654 789999999999955555 479999999999999884432111 111111110000
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL 330 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~ 330 (441)
...+....+...+.+......|.++...+.. .+..+...-...+|...|++|+++|+.+.|||||.|++.+|
T Consensus 418 -----a~~~~~asffvsvS~D~tlK~W~l~~s~~~~---~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 418 -----AGSKLGASFFVSVSQDCTLKLWDLPKSKETA---FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred -----eecccCccEEEEecCCceEEEecCCCccccc---ccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 0000111111111111222222222111000 11112222234578999999999999999999999999999
Q ss_pred eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe
Q 013545 331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG 409 (441)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~ 409 (441)
|+++..+. ...+..+..+...+.|++....+++.+. .++|+|.+.+..++++|.||+..|.-+.|-.+|+.|+||
T Consensus 490 W~le~~~l----~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~ 565 (775)
T KOG0319|consen 490 WDLEQLRL----LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISA 565 (775)
T ss_pred ecccCceE----EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEec
Confidence 99994432 3455566677888999988888877655 699999999999999999999999999999999999999
Q ss_pred ecCCcEEEeCCCCCC
Q 013545 410 GNDRQILVWCPSRHI 424 (441)
Q Consensus 410 s~D~~i~vW~~~~~~ 424 (441)
++||-|+||++.++.
T Consensus 566 ~adGliKlWnikt~e 580 (775)
T KOG0319|consen 566 GADGLIKLWNIKTNE 580 (775)
T ss_pred cCCCcEEEEeccchh
Confidence 999999999998775
No 39
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-31 Score=225.37 Aligned_cols=246 Identities=27% Similarity=0.443 Sum_probs=201.6
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
...++.++|++..++.+++++.||++||||+.....+ + ...+.|+.+|.++.+.+.++..++++
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P-----------i-----~~~kEH~~EV~Svdwn~~~r~~~lts 123 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKP-----------I-----HKFKEHKREVYSVDWNTVRRRIFLTS 123 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcc-----------h-----hHHHhhhhheEEeccccccceeEEee
Confidence 4789999999888889999999999999996544321 1 22457999999999999889999999
Q ss_pred eCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS 201 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~ 201 (441)
|+|++||+||...+.-++++.. ...++...++|.. ..+++++|.|+.+++||++..-..+.+..|..++.|..|+.-
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~--~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky 201 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI--PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY 201 (311)
T ss_pred ccCCceEeecCCCCcceEeecCCccEEEEEecCCCC--CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeeccccc
Confidence 9999999999998888888875 4568888999875 469999999999999999865444558999999999999998
Q ss_pred CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
++++++||+.|+.||.||+|+.+. |
T Consensus 202 ~~~vl~Tg~vd~~vr~wDir~~r~---------------p---------------------------------------- 226 (311)
T KOG0277|consen 202 NHNVLATGGVDNLVRGWDIRNLRT---------------P---------------------------------------- 226 (311)
T ss_pred CCcEEEecCCCceEEEEehhhccc---------------c----------------------------------------
Confidence 889999999999999999986320 0
Q ss_pred CCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeC
Q 013545 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ 360 (441)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (441)
...+.+|.-.|+.|+|||-. ..|+|++.|.++||||.+.+...
T Consensus 227 ---------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~--------------------- 270 (311)
T KOG0277|consen 227 ---------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA--------------------- 270 (311)
T ss_pred ---------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh---------------------
Confidence 00134677789999999975 57899999999999998864321
Q ss_pred CCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcC-CCCeEEEeecCCcEEEeCC
Q 013545 361 DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS-QDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 361 ~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp-d~~~l~s~s~D~~i~vW~~ 420 (441)
..+..-|+.-|..+.||+ +..++|++++|..+.||++
T Consensus 271 -----------------------~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 271 -----------------------IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -----------------------hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 112234777788888887 5678999999999999997
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=4e-30 Score=245.50 Aligned_cols=325 Identities=20% Similarity=0.374 Sum_probs=224.5
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.++||..+|++|.|+. .|..|+|||.|+.|.+||+-..+. .+ -.+||+..|+...|.. +..
T Consensus 102 tfngHK~AVt~l~fd~-~G~rlaSGskDt~IIvwDlV~E~G------------l~-----rL~GHkd~iT~~~F~~-~~~ 162 (888)
T KOG0306|consen 102 TFNGHKAAVTTLKFDK-IGTRLASGSKDTDIIVWDLVGEEG------------LF-----RLRGHKDSITQALFLN-GDS 162 (888)
T ss_pred eecccccceEEEEEcc-cCceEeecCCCccEEEEEecccee------------eE-----EeecchHHHhHHhccC-CCe
Confidence 3568999999999985 577899999999999999853221 11 2358999998877765 467
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC-------------------
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI------------------- 177 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl------------------- 177 (441)
+++|.|.|..||+||+++..+..+.- +.+.+..+++.+ .+++++..|+.+++|++
T Consensus 163 ~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G 237 (888)
T KOG0306|consen 163 FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRG 237 (888)
T ss_pred EEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-----ceEEEEecCCceEEEEeecccccccccccceeeccc
Confidence 99999999999999999888765432 233444444443 13444444555555554
Q ss_pred --------------------------------------------------------------------------------
Q 013545 178 -------------------------------------------------------------------------------- 177 (441)
Q Consensus 178 -------------------------------------------------------------------------------- 177 (441)
T Consensus 238 ~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~i 317 (888)
T KOG0306|consen 238 TFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETI 317 (888)
T ss_pred eeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhe
Confidence
Q ss_pred ----------------------------------CC-Cce------e--eeecCCCCCeEEEEEecCCCcEEEEeecCCc
Q 013545 178 ----------------------------------AS-GAI------S--QTLSGHRDGIMTVEWSTSSEWILVTGGCDGA 214 (441)
Q Consensus 178 ----------------------------------~~-~~~------~--~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~ 214 (441)
+. ++. + -++.||...|.++.||.++. +++|| ..++
T Consensus 318 r~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~-~~~Sg-a~~S 395 (888)
T KOG0306|consen 318 RTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI-LLASG-AGES 395 (888)
T ss_pred echhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCce-eeeec-CCCc
Confidence 21 100 0 13468999999999998864 45555 4679
Q ss_pred EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc-CcccccCCCCccc-ccCCC
Q 013545 215 IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS-SVGRIPAKGSVRQ-RLHPG 292 (441)
Q Consensus 215 I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 292 (441)
|+||+..+.+|++++....... +...+ ....+... ..|. +.. .+...
T Consensus 396 ikiWn~~t~kciRTi~~~y~l~--------~~Fvp-----------------gd~~Iv~G~k~Ge------l~vfdlaS~ 444 (888)
T KOG0306|consen 396 IKIWNRDTLKCIRTITCGYILA--------SKFVP-----------------GDRYIVLGTKNGE------LQVFDLASA 444 (888)
T ss_pred EEEEEccCcceeEEeccccEEE--------EEecC-----------------CCceEEEeccCCc------eEEEEeehh
Confidence 9999999999999886542211 00000 00000000 0000 000 00000
Q ss_pred cccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC-------CceeeeeeeEEec-cCcceEEEeeCCCcE
Q 013545 293 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG-------RNTLVNFETVRLQ-TSKPIQLATTQDPAV 364 (441)
Q Consensus 293 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 364 (441)
.. .-...+|.+.+.+++.+||++.+++||+|.+|++||..-. +..+...++..+. .+...++.++||+.+
T Consensus 445 ~l--~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 445 SL--VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hh--hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 00 0113489999999999999999999999999999997521 1111111222222 355678899999999
Q ss_pred EEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 365 VFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 365 ~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
++++-. .++++|-+.+-+....|.||.-||.|+.+|||++.++|||.|++|++|-++
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 888755 689999999999999999999999999999999999999999999999776
No 41
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=5.2e-31 Score=227.92 Aligned_cols=300 Identities=22% Similarity=0.380 Sum_probs=226.3
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCC------cccCCCCceeccceeEEeecccccCcccceeEEEE
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRA------TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW 111 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 111 (441)
.++.|.+.+.+.+|++ +|.+++|||.|-.|+|.|++.. +....+ ..+...+++ ++++.|..+|+++.|
T Consensus 107 ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~-~~qa~hPvI----RTlYDH~devn~l~F 180 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISG-DTQARHPVI----RTLYDHVDEVNDLDF 180 (430)
T ss_pred EEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccC-CcccCCceE----eehhhccCcccceee
Confidence 4678999999999996 6889999999999999999732 111111 111222332 456789999999999
Q ss_pred eeCCCCEEEEEeCCCcEEEEECCCCeEE---EEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee---
Q 013545 112 YPVDTGLFVTGSYDHYVKVWDTNCTRVV---MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT--- 185 (441)
Q Consensus 112 ~~~~~~~l~sgs~D~~i~iWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~--- 185 (441)
+|. ..+|+||+.|++||++|....... ..++-...+.++.|+|.+ .+|++|.....+++||++|-++...
T Consensus 181 HPr-e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG---efllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 181 HPR-ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG---EFLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred cch-hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC---ceEEEecCCCceeEEeccceeEeeecCc
Confidence 984 669999999999999998654322 223334568888898854 4788898888999999999876433
Q ss_pred ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545 186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS 265 (441)
Q Consensus 186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (441)
-.+|++.|++|.+++.++ +.+++|.||.|||||=-+++|++++.
T Consensus 257 d~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~----------------------------------- 300 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIG----------------------------------- 300 (430)
T ss_pred ccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHH-----------------------------------
Confidence 247999999999999997 67999999999999977777766542
Q ss_pred CCCCCccccCcccccCCCCcccccCCCcccccccceeec-cCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeee
Q 013545 266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY-GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE 344 (441)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~ 344 (441)
.+|. ..|.+..|..+|+||++.+.|..+++|.+.+++.... +.
T Consensus 301 -----------------------------------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~-Yt 344 (430)
T KOG0640|consen 301 -----------------------------------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE-YT 344 (430)
T ss_pred -----------------------------------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE-Ee
Confidence 1343 3589999999999999999999999999999874322 21
Q ss_pred eE--EeccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCceEeee-cccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 345 TV--RLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 345 ~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~~~~l-~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
.- ...+....+..+...-.+++.+- ...+-.||..+...+..+ .||.+.+.++.-||.+--++|||.|..+|.|-
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 10 00111122344555555555553 357888999887655443 58999999999999999999999999999994
No 42
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=1.4e-30 Score=230.87 Aligned_cols=279 Identities=20% Similarity=0.374 Sum_probs=214.6
Q ss_pred CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC--CCEE
Q 013545 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD--TGLF 119 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~--~~~l 119 (441)
|...|.++... +++|+||+.||+++|||.+... + ....||+++|.++++...+ ...|
T Consensus 104 hdDWVSsv~~~---~~~IltgsYDg~~riWd~~Gk~-------------~-----~~~~Ght~~ik~v~~v~~n~~~~~f 162 (423)
T KOG0313|consen 104 HDDWVSSVKGA---SKWILTGSYDGTSRIWDLKGKS-------------I-----KTIVGHTGPIKSVAWVIKNSSSCLF 162 (423)
T ss_pred chhhhhhhccc---CceEEEeecCCeeEEEecCCce-------------E-----EEEecCCcceeeeEEEecCCccceE
Confidence 88899999885 4699999999999999986321 1 1234899999988885543 3469
Q ss_pred EEEeCCCcEEEEECCCCeEEEEE-----ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC----------------
Q 013545 120 VTGSYDHYVKVWDTNCTRVVMNF-----KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA---------------- 178 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~---------------- 178 (441)
+++|.|.++++|..+.+...... .+...+.++...++ ...+++|+.|..|++|+.+
T Consensus 163 vsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s---gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk 239 (423)
T KOG0313|consen 163 VSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS---GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRK 239 (423)
T ss_pred EEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC---CCeEEeecccceeeecccCCCccccccccchhhhh
Confidence 99999999999988765532211 23344666665553 4589999999999999932
Q ss_pred ---------CCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccc
Q 013545 179 ---------SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLS 249 (441)
Q Consensus 179 ---------~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (441)
++.++-++.||.+.|.+|.|++.. .+.|+|+|.+|+.||+.++++...+..
T Consensus 240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~~~~~~~------------------ 299 (423)
T KOG0313|consen 240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGLKSTLTT------------------ 299 (423)
T ss_pred hhhhhhcccccCceEEecccccceeeEEEcCCC--ceEeecccceEEEEEeecccceeeeec------------------
Confidence 122455789999999999999854 578999999999999988765433211
Q ss_pred cCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEE
Q 013545 250 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIR 329 (441)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~ 329 (441)
..++++++.+|...+|++|+.|.-+|
T Consensus 300 ------------------------------------------------------~ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 300 ------------------------------------------------------NKSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred ------------------------------------------------------CcceeEeecccccceeeecCCCCcee
Confidence 12478999999999999999999999
Q ss_pred EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCc-eEeeecccccceEEEEEcCCCCeE
Q 013545 330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGK-TCLTFRGHYEYVNCCCFSSQDQEL 406 (441)
Q Consensus 330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~-~~~~l~gh~~~v~~v~fspd~~~l 406 (441)
+||++++...... ..+..+.+-...+.++|...+.++.+ .+.+++||+.+-+ .+..+.+|.+.|.++.|+ ++..+
T Consensus 326 l~DPR~~~gs~v~-~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~I 403 (423)
T KOG0313|consen 326 LWDPRTGDGSVVS-QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLI 403 (423)
T ss_pred ecCCCCCCCceeE-EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceE
Confidence 9999987543322 23333445556677888777666543 3689999998877 899999999999999999 46799
Q ss_pred EEeecCCcEEEeCC
Q 013545 407 YTGGNDRQILVWCP 420 (441)
Q Consensus 407 ~s~s~D~~i~vW~~ 420 (441)
+|||.|.+|+|+.-
T Consensus 404 vSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 404 VSGGADNKLRIFKG 417 (423)
T ss_pred EeccCcceEEEecc
Confidence 99999999999854
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.6e-30 Score=213.17 Aligned_cols=283 Identities=22% Similarity=0.317 Sum_probs=223.0
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
.++..|.++|.++.|+. +|+|.+|++.|.+||+||...+... .+..||..+|..+..+. |.
T Consensus 11 ~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~li-----------------ktYsghG~EVlD~~~s~-Dn 71 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALI-----------------KTYSGHGHEVLDAALSS-DN 71 (307)
T ss_pred eeecccccceEEEEEcc-CCCEEEEcCCCceEEeeccccccee-----------------eeecCCCceeeeccccc-cc
Confidence 35678999999999985 6899999999999999998766431 23357888899888776 67
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC--ceeeeecCCCCCe
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG--AISQTLSGHRDGI 193 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~--~~~~~l~~h~~~v 193 (441)
..|++||.|+.|.+||+++|++++.+.. .+++..+.|... ..+++||+.|.++++||..+. ++++.+....+.|
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNee---sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEE---SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGV 148 (307)
T ss_pred cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCc---ceEEEeccccceeEEEEcccCCCCccchhhhhcCce
Confidence 7999999999999999999999998874 467777777653 458999999999999999764 6889999999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
++|.... ..+++||.||++|.||+|.+.....+
T Consensus 149 ~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy-------------------------------------------- 181 (307)
T KOG0316|consen 149 SSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDY-------------------------------------------- 181 (307)
T ss_pred eEEEecc---cEEEeeccCCcEEEEEeecceeehhh--------------------------------------------
Confidence 9999874 35789999999999999976321100
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
-..+|++++|++|++.++.++-|+++|+.|-++++.... +.... ...-.
T Consensus 182 -----------------------------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s-YkGhk-n~eyk 230 (307)
T KOG0316|consen 182 -----------------------------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS-YKGHK-NMEYK 230 (307)
T ss_pred -----------------------------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH-hcccc-cceee
Confidence 124699999999999999999999999999998874221 11110 01112
Q ss_pred eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccc-eEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY-VNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~-v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
....+....+.+++++. +.+..||+.+...+..++.|... |.+++++|.-..|+++. ++.+..|-.
T Consensus 231 ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred eeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence 33455566667777655 67999999999999999999988 89999999877777764 555666743
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.1e-31 Score=231.27 Aligned_cols=249 Identities=22% Similarity=0.390 Sum_probs=197.7
Q ss_pred cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~ 178 (441)
.||..+|+.+.++| +-.+++++++|.+|++||..+++++..++. ...+.++.++..+ .+|++++.|-.+++||.+
T Consensus 105 ~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G---k~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG---KYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc---cEEEecCCccchhheeHH
Confidence 47999999999887 677899999999999999999998766553 3447777777644 589999999999999998
Q ss_pred C-CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 179 S-GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 179 ~-~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
+ ..+++.+.+|...|.++.|-|-|.+ ++|++.|.+|+.||+.++-|+.++
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~-ilS~srD~tik~We~~tg~cv~t~---------------------------- 231 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPLGDH-ILSCSRDNTIKAWECDTGYCVKTF---------------------------- 231 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEecCCe-eeecccccceeEEecccceeEEec----------------------------
Confidence 7 4677888999999999999999985 689999999999999988776543
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
.+|...|.-++.+.||..+++++.|.+|++|-+.+++
T Consensus 232 -------------------------------------------~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~ 268 (406)
T KOG0295|consen 232 -------------------------------------------PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ 268 (406)
T ss_pred -------------------------------------------cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch
Confidence 3566789999999999999999999999999998862
Q ss_pred c--eee----eeeeEEecc---CcceEEEe-eCCC-cEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCe
Q 013545 338 N--TLV----NFETVRLQT---SKPIQLAT-TQDP-AVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE 405 (441)
Q Consensus 338 ~--~~~----~~~~~~~~~---~~~~~~~~-~~~~-~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~ 405 (441)
. .+- ..+.+...+ ...+.-+. +.++ ..++++.. .++|+||+.++.++-+|.||..+|..++|+|.|++
T Consensus 269 ~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gky 348 (406)
T KOG0295|consen 269 CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKY 348 (406)
T ss_pred hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeE
Confidence 1 110 011111111 01111111 1122 24444444 58999999999999999999999999999999999
Q ss_pred EEEeecCCcEEEeCCCCCC
Q 013545 406 LYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 406 l~s~s~D~~i~vW~~~~~~ 424 (441)
|+|+.+|+++|+||..+.+
T Consensus 349 i~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 349 ILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred EEEEecCCcEEEEEeccce
Confidence 9999999999999998654
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=249.76 Aligned_cols=253 Identities=25% Similarity=0.471 Sum_probs=207.7
Q ss_pred cccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe--EEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC-
Q 013545 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR--VVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI- 177 (441)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl- 177 (441)
|...|.++.+++ ++..+++++.|+.+++|+..... .+... .+...+..+.|++++. ++++++.|++|++||+
T Consensus 158 ~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~---~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 158 ECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS---YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc---EEEEecCCceEEEeecc
Confidence 477899988887 78899999999999999996665 33333 2344578889998654 8999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
..+..++++.||...|++++|+|+++ +++||+.|++|||||+++++|...+
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l---------------------------- 284 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKL---------------------------- 284 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEee----------------------------
Confidence 55688999999999999999999995 7899999999999999987766544
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
.+|.+.|++++|++++.+|++++.|++|++||+.++.
T Consensus 285 -------------------------------------------~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 285 -------------------------------------------KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred -------------------------------------------eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 4678889999999999999999999999999999987
Q ss_pred ceeeeeeeEEeccC--cceEEEeeCCCcEEEEeCCC-ceEEEEccCCceEeeecccccc---eEEEEEcCCCCeEEEeec
Q 013545 338 NTLVNFETVRLQTS--KPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEY---VNCCCFSSQDQELYTGGN 411 (441)
Q Consensus 338 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~wd~~~~~~~~~l~gh~~~---v~~v~fspd~~~l~s~s~ 411 (441)
.. ....+..... ....+.+++++.+++++..+ .+++||+.+++....+.+|... +.+..++++++++++|+.
T Consensus 322 ~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~ 399 (456)
T KOG0266|consen 322 KL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE 399 (456)
T ss_pred ee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeC
Confidence 32 0111111111 34667888999999998875 8999999999999999999884 455566789999999999
Q ss_pred CCcEEEeCCCCCCCCCccCCc
Q 013545 412 DRQILVWCPSRHISDGVDAGP 432 (441)
Q Consensus 412 D~~i~vW~~~~~~~~~~~~~~ 432 (441)
|+.|.+|++++......+.|-
T Consensus 400 d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 400 DGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred CceEEEEeCCccchhhhhcCC
Confidence 999999999976555444443
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-29 Score=246.34 Aligned_cols=321 Identities=17% Similarity=0.285 Sum_probs=242.9
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
+..|-.|+|+|. .-+++++=-.|.|++||...++..+ -+.+|.++|..+.|+| ..++|+||
T Consensus 9 SsRvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~-----------------rFdeHdGpVRgv~FH~-~qplFVSG 69 (1202)
T KOG0292|consen 9 SSRVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLID-----------------RFDEHDGPVRGVDFHP-TQPLFVSG 69 (1202)
T ss_pred cccccceecCCC-CCEEEEeecCceeeeehhhhhhHHh-----------------hhhccCCccceeeecC-CCCeEEec
Confidence 577899999985 5689999999999999998765432 1347999999999987 68899999
Q ss_pred eCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS 201 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~ 201 (441)
|+|-+|++|+.++.+++.++.. -..+..+.|++-- ..+.|+|.|-+|+||+.++++++..+.||..-|+|..|+|.
T Consensus 70 GDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey---PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt 146 (1202)
T KOG0292|consen 70 GDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY---PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT 146 (1202)
T ss_pred CCccEEEEEecccceehhhhccccceeEEeeccCCC---ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc
Confidence 9999999999999888766543 3457777777643 48999999999999999999999999999999999999997
Q ss_pred CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
.+ +++|+|-|.+||+||+.-.+. .....+ ++ ...+ +... ++ ..+
T Consensus 147 ED-lIVSaSLDQTVRVWDisGLRk------k~~~pg---------~~----e~~~--~~~~-----~~-------~dL-- 190 (1202)
T KOG0292|consen 147 ED-LIVSASLDQTVRVWDISGLRK------KNKAPG---------SL----EDQM--RGQQ-----GN-------SDL-- 190 (1202)
T ss_pred cc-eEEEecccceEEEEeecchhc------cCCCCC---------Cc----hhhh--hccc-----cc-------hhh--
Confidence 66 689999999999999853110 000000 00 0000 0000 00 000
Q ss_pred CCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC
Q 013545 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD 361 (441)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (441)
.+..+. .....+.+|...|+-++|+|.-..|+||+.|+.|++|-+...+. -...+.+.+.+....+.+.|.
T Consensus 191 fg~~Da-------VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa--WEvDtcrgH~nnVssvlfhp~ 261 (1202)
T KOG0292|consen 191 FGQTDA-------VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--WEVDTCRGHYNNVSSVLFHPH 261 (1202)
T ss_pred cCCcCe-------eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc--eeehhhhcccCCcceEEecCc
Confidence 000000 00112468988999999999999999999999999998875432 234455666777778888888
Q ss_pred CcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccCC
Q 013545 362 PAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAG 431 (441)
Q Consensus 362 ~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~ 431 (441)
..++++.+. ..+|+||+.....+.+|+--.+..|+++-+|..++++ +++|+-+.|+.+++.+...+.-|
T Consensus 262 q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA-AgHDsGm~VFkleRErpa~~v~~ 331 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA-AGHDSGMIVFKLERERPAYAVNG 331 (1202)
T ss_pred cceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee-eecCCceEEEEEcccCceEEEcC
Confidence 888887765 6899999999999999998889999999999988777 55777778998887766555444
No 47
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.3e-31 Score=228.64 Aligned_cols=298 Identities=15% Similarity=0.239 Sum_probs=232.6
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
.+.-|..+-+-|..||| +++||+|||-||-|.+||..+++.... -..+.. ..+.-|..+|.|+.|+. |.
T Consensus 207 ~IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKD-LkYQAq--------d~fMMmd~aVlci~FSR-Ds 275 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKD-LKYQAQ--------DNFMMMDDAVLCISFSR-DS 275 (508)
T ss_pred heecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhh-hhhhhh--------cceeecccceEEEeecc-cH
Confidence 34446677899999997 688999999999999999877653110 000011 11223667899998887 78
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEe--cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~ 194 (441)
+++|||+.||.|++|.+.+|.+++.|. +...+.++.|+.+. ..+.+++-|.++++..+++|++++.++||.+-|.
T Consensus 276 EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~---SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 276 EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN---SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred HHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc---chhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 899999999999999999999998776 34567888888754 3577889999999999999999999999999999
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS 274 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (441)
.+.|.++|.+ ++|+|.||+|++|+.++..|+.+++...
T Consensus 353 ~a~ft~dG~~-iisaSsDgtvkvW~~KtteC~~Tfk~~~----------------------------------------- 390 (508)
T KOG0275|consen 353 EATFTDDGHH-IISASSDGTVKVWHGKTTECLSTFKPLG----------------------------------------- 390 (508)
T ss_pred ceEEcCCCCe-EEEecCCccEEEecCcchhhhhhccCCC-----------------------------------------
Confidence 9999999986 5899999999999999988877664210
Q ss_pred CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
..-+|+++-.-|.+ ..++.+....+|.+-++...- ...+..-....+.-
T Consensus 391 ----------------------------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv--VrsfsSGkREgGdF 440 (508)
T KOG0275|consen 391 ----------------------------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV--VRSFSSGKREGGDF 440 (508)
T ss_pred ----------------------------CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE--EeeeccCCccCCce
Confidence 11235666666654 356677778888888876421 11122222223334
Q ss_pred eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
+..+.+|.|..++..+. ..+..|.+.+|++-.++.-|++.|-.++-+|..+.|||-++|+.+++|.+
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence 56788999999998876 46788999999999999999999999999999999999999999999975
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.6e-30 Score=213.20 Aligned_cols=241 Identities=18% Similarity=0.385 Sum_probs=198.0
Q ss_pred cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d~~I~vwdl~ 178 (441)
..|.++|..+.+.- ||++.+|||.|++||+|++..+.+++++..+|. +...+.+.+ +..+++|+.|..|.+||++
T Consensus 14 ~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D---nskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD---NSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred cccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc---ccccccCCCCceEEEEEcc
Confidence 46888999888876 899999999999999999999999999987654 666666654 3469999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc--eeeEeccCCccccCCCCcccccccccCccCCc
Q 013545 179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG--CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256 (441)
Q Consensus 179 ~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (441)
+|+.++.++||.+.|.++.|+.+.. +++|||.|.++|+||-|+.. ++++
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQi---------------------------- 140 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQI---------------------------- 140 (307)
T ss_pred cCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccch----------------------------
Confidence 9999999999999999999998875 78999999999999988631 0100
Q ss_pred CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
+....+.|.++.+. +..|++||.||++|.||++.+
T Consensus 141 -------------------------------------------ldea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G 175 (307)
T KOG0316|consen 141 -------------------------------------------LDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKG 175 (307)
T ss_pred -------------------------------------------hhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecc
Confidence 11123457777775 678999999999999999987
Q ss_pred CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccc--eEEEEEcCCCCeEEEeecCC
Q 013545 337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY--VNCCCFSSQDQELYTGGNDR 413 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~--v~~v~fspd~~~l~s~s~D~ 413 (441)
+... .....+..++.+++|+...++++. +++++.|-.+|+++..+.||... =.+++|+.....+++||+||
T Consensus 176 ~l~s------Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 176 TLSS------DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred eeeh------hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc
Confidence 6321 222345567889999988777765 68999999999999999999863 45677888889999999999
Q ss_pred cEEEeCCCCCC
Q 013545 414 QILVWCPSRHI 424 (441)
Q Consensus 414 ~i~vW~~~~~~ 424 (441)
.|.+||+-...
T Consensus 250 ~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 250 KVYFWDLVDET 260 (307)
T ss_pred eEEEEEeccce
Confidence 99999987554
No 49
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.3e-29 Score=240.41 Aligned_cols=338 Identities=17% Similarity=0.281 Sum_probs=239.4
Q ss_pred ceeEEEccCCCC--cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 45 SINSLQVDLTEE--RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 45 ~V~~l~~s~~~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
.+-++++.|.++ +.|++ -.+.++..|.+.........+ .....-...||...|.+++++. +...++||
T Consensus 322 kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~--------~~~~~i~~~GHR~dVRsl~vS~-d~~~~~Sg 391 (888)
T KOG0306|consen 322 KIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEA--------DRTSNIEIGGHRSDVRSLCVSS-DSILLASG 391 (888)
T ss_pred heeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccc--------cccceeeeccchhheeEEEeec-Cceeeeec
Confidence 366666665433 24555 567888888876411110000 0011123459999999999986 55566666
Q ss_pred eCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~ 202 (441)
+ .+.|++|+..+.++++++... .+.+..|.| ++.+++.|..+|.+.+||+.+..++.+++.|.+.+++++.+||+
T Consensus 392 a-~~SikiWn~~t~kciRTi~~~-y~l~~~Fvp---gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~ 466 (888)
T KOG0306|consen 392 A-GESIKIWNRDTLKCIRTITCG-YILASKFVP---GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN 466 (888)
T ss_pred C-CCcEEEEEccCcceeEEeccc-cEEEEEecC---CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC
Confidence 4 468999999999999998866 455555665 34688999999999999999999999999999999999999999
Q ss_pred CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545 203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282 (441)
Q Consensus 203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (441)
+. +++||.|.+|++||...-. . ++..+ ... .............+..++.++|++++.+-
T Consensus 467 ~g-~vT~saDktVkfWdf~l~~---~-~~gt~-----~k~-----------lsl~~~rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 467 KG-FVTGSADKTVKFWDFKLVV---S-VPGTQ-----KKV-----------LSLKHTRTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred Cc-eEEecCCcEEEEEeEEEEe---c-cCccc-----cee-----------eeeccceEEeccccEEEEEEcCCCcEEEE
Confidence 86 6899999999999975210 0 00000 000 00000000111223345777888877665
Q ss_pred CCcccccC---CCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545 283 GSVRQRLH---PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359 (441)
Q Consensus 283 ~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (441)
+.++..+. -..+.....+.+|.=||.+|++|||++.++|||+|++|++|-+.-|... ..+-.+.+..+.+.+.
T Consensus 526 sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH----KS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH----KSFFAHDDSVMSVQFL 601 (888)
T ss_pred EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh----hhhhcccCceeEEEEc
Confidence 55443321 1111222345789999999999999999999999999999988766432 1222345677788888
Q ss_pred CCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545 360 QDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 360 ~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~ 422 (441)
|.....++++- ..+|.||-.+.++..+|.||...|+|++.+|+|.+++|+|.|.+||+|....
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 86555555443 5799999999999999999999999999999999999999999999997654
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1e-29 Score=238.16 Aligned_cols=254 Identities=19% Similarity=0.347 Sum_probs=209.5
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
+.+..|+..|-++.|+|. ..+++++=..|.+.|||.++.... +++ .--..+|.++.|.. ..
T Consensus 7 rk~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmV---------ksf--------eV~~~PvRa~kfia-Rk 67 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMV---------KSF--------EVSEVPVRAAKFIA-RK 67 (794)
T ss_pred hHhhccCCceeeeecCCC-CceEEEeeecCeeEEEecccceee---------eee--------eecccchhhheeee-cc
Confidence 344568899999999986 568999999999999998765421 111 11223566677765 46
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCeE
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIM 194 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v~ 194 (441)
+.+++|++|..||+++..+++.+.+|.. +.-+++++.+|.. .++.++|.|-.|++||-+.. .+.+++.||..-|+
T Consensus 68 nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~---P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM 144 (794)
T KOG0276|consen 68 NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL---PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM 144 (794)
T ss_pred ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCC---CeEEecCCccEEEEeeccCceeeeeEEcCcceEEE
Confidence 7899999999999999999999999875 5568888888854 58899999999999999876 67889999999999
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS 274 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (441)
+|+|.|.+...|||+|-|++|++|.+.+..+..
T Consensus 145 qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf----------------------------------------------- 177 (794)
T KOG0276|consen 145 QVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF----------------------------------------------- 177 (794)
T ss_pred EEEecCCCccceeeeeccccEEEEEcCCCCCce-----------------------------------------------
Confidence 999999988789999999999999986432211
Q ss_pred CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC--CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG--MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352 (441)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~ 352 (441)
.+.+|...|++|++-+.| .||+||+.|.+|++||..+.
T Consensus 178 ------------------------Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---------------- 217 (794)
T KOG0276|consen 178 ------------------------TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---------------- 217 (794)
T ss_pred ------------------------eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH----------------
Confidence 235788889999998755 69999999999999998753
Q ss_pred ceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545 353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV 428 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~ 428 (441)
.++.+|.||...|+.+.|+|.=..++|||+||++|||...+.++.-+
T Consensus 218 -----------------------------~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 218 -----------------------------SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred -----------------------------HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence 34567899999999999999999999999999999999998887643
No 51
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=7e-29 Score=243.58 Aligned_cols=282 Identities=23% Similarity=0.391 Sum_probs=223.6
Q ss_pred ecC-CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 39 VSP-HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 39 ~~~-H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
+.+ |...+.++.|. .+++++++.|++|++||..++... .....||.+.|.++.+.. .++
T Consensus 203 ~~~~~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i----------------~~~l~GH~g~V~~l~~~~-~~~ 262 (537)
T KOG0274|consen 203 LLGTDDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLI----------------LTRLVGHFGGVWGLAFPS-GGD 262 (537)
T ss_pred ecccCcchhhhheee---cCeEEecCCCceeEEeecccceEE----------------EeeccCCCCCceeEEEec-CCC
Confidence 344 55789999997 347999999999999998765421 122469999999998865 578
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v 196 (441)
++++|+.|.++|+||+.++.+...+.. .+.+..+...+ ..+++|+.|.+|++|+++++.++..+.+|.+.|.++
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~-----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP-----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC-----ceEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999999998884 44555555444 367888999999999999999999999999999999
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
.+. +. ++++|+.|++|++||+++++|+..+
T Consensus 338 ~~~--~~-~lvsgs~d~~v~VW~~~~~~cl~sl----------------------------------------------- 367 (537)
T KOG0274|consen 338 QLD--EP-LLVSGSYDGTVKVWDPRTGKCLKSL----------------------------------------------- 367 (537)
T ss_pred Eec--CC-EEEEEecCceEEEEEhhhceeeeee-----------------------------------------------
Confidence 998 33 6899999999999999987776543
Q ss_pred ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC-CceeeeeeeEEeccCcceE
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG-RNTLVNFETVRLQTSKPIQ 355 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~ 355 (441)
.+|.+.|.++.+.+. ..+++|+.|++|++||+.+. +.. .+...+....
T Consensus 368 ------------------------~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~----~tl~~h~~~v-- 416 (537)
T KOG0274|consen 368 ------------------------SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCI----HTLQGHTSLV-- 416 (537)
T ss_pred ------------------------cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhh----hhhcCCcccc--
Confidence 468889999988766 89999999999999999987 321 1111111111
Q ss_pred EEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc-cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545 356 LATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV 428 (441)
Q Consensus 356 ~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g-h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~ 428 (441)
......+..+++... +.+++||..++++++++.+ |...|..+++. ...+++++.|+++++||++++...+.
T Consensus 417 ~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 417 SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhh
Confidence 112223445555444 6799999999999999999 77899999987 45788899999999999998886653
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.5e-29 Score=240.82 Aligned_cols=271 Identities=23% Similarity=0.347 Sum_probs=196.8
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccC--------------CCC----------ce----------
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE--------------GGG----------HI---------- 85 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~--------------~~~----------~~---------- 85 (441)
.+|.++|+++.||+ +|+|||||+.|+.|+||.+...+.+. ..+ .+
T Consensus 264 ~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred cccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 38999999999996 69999999999999999986511000 000 00
Q ss_pred ------eccceeEEeec---ccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccC
Q 013545 86 ------AKHRSVFVVDK---QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL 156 (441)
Q Consensus 86 ------~~~~~~~~~~~---~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 156 (441)
.....++.+.. ..+.||.+.|.++.|+. .++|+|+|.|+|||+|++....++..|.++..|.+++|+|.
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV 420 (712)
T ss_pred cCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence 00000111111 13469999999999985 57999999999999999999999999999999999999997
Q ss_pred CCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccc
Q 013545 157 AASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL 236 (441)
Q Consensus 157 ~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~ 236 (441)
. +.++++|+.|+.|+||++...+...-. .-...|+++.|.|+|++ .+.|+-+|.+++|+++..+.........
T Consensus 421 D--DryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~~~~~I~~--- 493 (712)
T KOG0283|consen 421 D--DRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLVSDFHIRL--- 493 (712)
T ss_pred C--CCcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeEEEeeeEee---
Confidence 4 468999999999999999877654332 33488999999999996 5789999999999988654332221100
Q ss_pred cCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC
Q 013545 237 GRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG 316 (441)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 316 (441)
.. .....|. .|+++.|.|..
T Consensus 494 -----------------------------------------------------~~------~Kk~~~~-rITG~Q~~p~~ 513 (712)
T KOG0283|consen 494 -----------------------------------------------------HN------KKKKQGK-RITGLQFFPGD 513 (712)
T ss_pred -----------------------------------------------------cc------CccccCc-eeeeeEecCCC
Confidence 00 0011233 69999999765
Q ss_pred C-EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccc--cc
Q 013545 317 M-YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY--EY 393 (441)
Q Consensus 317 ~-~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~--~~ 393 (441)
. .|+..++|.+|||+|.+..... ..|+|+. ..
T Consensus 514 ~~~vLVTSnDSrIRI~d~~~~~lv---------------------------------------------~KfKG~~n~~S 548 (712)
T KOG0283|consen 514 PDEVLVTSNDSRIRIYDGRDKDLV---------------------------------------------HKFKGFRNTSS 548 (712)
T ss_pred CCeEEEecCCCceEEEeccchhhh---------------------------------------------hhhcccccCCc
Confidence 4 5777899999999998643311 1111111 11
Q ss_pred eEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 394 VNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 394 v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
-....|+.||++|++|++|..|.||+.+...+
T Consensus 549 Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 549 QISASFSSDGKHIVSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred ceeeeEccCCCEEEEeecCceEEEEeCCCCcc
Confidence 34557999999999999999999999865443
No 53
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=9.4e-29 Score=224.43 Aligned_cols=275 Identities=20% Similarity=0.325 Sum_probs=207.5
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
-.|.++|+.+.+.|.+...++|++..+.|.|||..+....... ....++-+ .+.||++.-..+.|++.....|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~--~~~~~Pdl-----~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA--SGECRPDL-----RLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc--cccCCCce-----EEEeecccccccccccccceeE
Confidence 4799999999999988889999999999999998754332110 00111111 2347887666789988888899
Q ss_pred EEEeCCCcEEEEECCCCeE-------EEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC--CCceeeeecCC
Q 013545 120 VTGSYDHYVKVWDTNCTRV-------VMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA--SGAISQTLSGH 189 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~--~~~~~~~l~~h 189 (441)
++|+.|++|++||+..... ...+. +...+..++|++.. ..++++++.|+.+.|||++ +.++.....+|
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h--~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah 271 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH--EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH 271 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc--hhhheeecCCCeEEEEEcCCCCCCCccccccc
Confidence 9999999999999865432 12222 34557788888864 4589999999999999999 55667788899
Q ss_pred CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN 269 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (441)
.+.|.|++|+|-+..+|||||.|++|++||+|+.+.
T Consensus 272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-------------------------------------------- 307 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-------------------------------------------- 307 (422)
T ss_pred CCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--------------------------------------------
Confidence 999999999999999999999999999999986320
Q ss_pred CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEe
Q 013545 270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRL 348 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~ 348 (441)
....+.+|.+.|..|.|||.. ..|||++.|+++.+||+..-..... . ..
T Consensus 308 --------------------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~---~-ed 357 (422)
T KOG0264|consen 308 --------------------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS---P-ED 357 (422)
T ss_pred --------------------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC---h-hh
Confidence 001135788999999999986 5688999999999999985221100 0 00
Q ss_pred ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCe-EEEeecCCcEEEeCCCCCC
Q 013545 349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE-LYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~-l~s~s~D~~i~vW~~~~~~ 424 (441)
....+. +++-...||...|.++.|+|..-+ ++|+++|+.++||.+....
T Consensus 358 a~dgpp---------------------------EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 358 AEDGPP---------------------------ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENI 407 (422)
T ss_pred hccCCc---------------------------ceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccc
Confidence 011121 223345789999999999999877 6699999999999998554
No 54
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=3.8e-30 Score=230.05 Aligned_cols=248 Identities=23% Similarity=0.364 Sum_probs=180.7
Q ss_pred cceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeeccccc-CcccceeEEEEe
Q 013545 34 NYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH-GHKYAISSAIWY 112 (441)
Q Consensus 34 ~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~ 112 (441)
+|+.++..|...|.++.++ .++.+++||+.||.|++|+...... +..+ .|..+|.+++|+
T Consensus 129 nFEtilQaHDs~Vr~m~ws-~~g~wmiSgD~gG~iKyWqpnmnnV------------------k~~~ahh~eaIRdlafS 189 (464)
T KOG0284|consen 129 NFETILQAHDSPVRTMKWS-HNGTWMISGDKGGMIKYWQPNMNNV------------------KIIQAHHAEAIRDLAFS 189 (464)
T ss_pred eHHHHhhhhcccceeEEEc-cCCCEEEEcCCCceEEecccchhhh------------------HHhhHhhhhhhheeccC
Confidence 4566788899999999998 4788999999999999998753211 0112 355899999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC
Q 013545 113 PVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (441)
Q Consensus 113 ~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~ 191 (441)
|. ...|+|||+|++|+|||....+....+..++ .+.++.++|. ..++|+|+.|+.|++||.+++.++.++.+|..
T Consensus 190 pn-DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~---kgLiasgskDnlVKlWDprSg~cl~tlh~HKn 265 (464)
T KOG0284|consen 190 PN-DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT---KGLIASGSKDNLVKLWDPRSGSCLATLHGHKN 265 (464)
T ss_pred CC-CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc---cceeEEccCCceeEeecCCCcchhhhhhhccc
Confidence 94 5589999999999999998877766665443 4778888884 35899999999999999999999999999999
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCC--CCcccccccccCccCCcCCCCCCcccCCCC
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR--PPLLKRKSLSAGQNSSVKPRAPQKRSANGN 269 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (441)
.|+.+.|+|++.+ |+|+|.|..++++|+|+-+.+.++..+...+... .|+.... ++
T Consensus 266 tVl~~~f~~n~N~-Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l-----------------ft---- 323 (464)
T KOG0284|consen 266 TVLAVKFNPNGNW-LLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL-----------------FT---- 323 (464)
T ss_pred eEEEEEEcCCCCe-eEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccc-----------------ee----
Confidence 9999999999975 7899999999999999655444443322211100 0000000 00
Q ss_pred CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545 270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~ 334 (441)
....++ .+................+|.+.|.+|+++|-|..|++|+.|.++++|.-.
T Consensus 324 --sgg~Dg------svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 324 --SGGSDG------SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred --eccCCC------ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 000001 111111110011112346899999999999999999999999999999643
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.6e-27 Score=251.00 Aligned_cols=246 Identities=15% Similarity=0.277 Sum_probs=189.4
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC----e----EEEEEecCCeeEEEeeccCCCCccEEEEEeCCC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT----R----VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV 170 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~ 170 (441)
..+|...|.++.|++ ++++|||||.|++|+|||+... . +...+.....+..+.+++.. ..+|++++.|+
T Consensus 479 ~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYI--KSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCC--CCEEEEEeCCC
Confidence 346899999999987 7899999999999999997531 1 12223334456677776642 35799999999
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545 171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 171 ~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
.|++||+++++.+..+.+|.+.|++++|+|.+..+|+||+.|++|++||++++.++..+.
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-------------------- 615 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-------------------- 615 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--------------------
Confidence 999999999999999999999999999997433468999999999999998754433221
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc-cCCCEEEEeecCCcEE
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT-EDGMYLLSAGSDSRIR 329 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~sgs~D~~i~ 329 (441)
+...|.++.|+ ++|.+|++|+.|++|+
T Consensus 616 ----------------------------------------------------~~~~v~~v~~~~~~g~~latgs~dg~I~ 643 (793)
T PLN00181 616 ----------------------------------------------------TKANICCVQFPSESGRSLAFGSADHKVY 643 (793)
T ss_pred ----------------------------------------------------cCCCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence 11347888995 5799999999999999
Q ss_pred EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccC------CceEeeecccccceEEEEEcCC
Q 013545 330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWS------GKTCLTFRGHYEYVNCCCFSSQ 402 (441)
Q Consensus 330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~------~~~~~~l~gh~~~v~~v~fspd 402 (441)
+||+.+.+... .....+......+.+. ++..+++++ .+.+++||+.. ++.+.++.+|...+++++|+|+
T Consensus 644 iwD~~~~~~~~---~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~ 719 (793)
T PLN00181 644 YYDLRNPKLPL---CTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS 719 (793)
T ss_pred EEECCCCCccc---eEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC
Confidence 99998754211 1112223334455555 555665554 47899999864 3577899999999999999999
Q ss_pred CCeEEEeecCCcEEEeCCCCC
Q 013545 403 DQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 403 ~~~l~s~s~D~~i~vW~~~~~ 423 (441)
+++|++|+.|++|++|+....
T Consensus 720 ~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 720 DGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCEEEEEeCCCEEEEEECCCC
Confidence 999999999999999997644
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-28 Score=238.70 Aligned_cols=247 Identities=22% Similarity=0.350 Sum_probs=203.8
Q ss_pred cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce
Q 013545 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182 (441)
Q Consensus 104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~ 182 (441)
..|..+.|+| ....++++=..|.|++||-+-+.++..|. +.|++..+.|+|.. .+++||+.|..|+||+.++.++
T Consensus 10 sRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q---plFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 10 SRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ---PLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred ccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC---CeEEecCCccEEEEEeccccee
Confidence 3566788887 57899999999999999999888887775 67999999999854 5999999999999999999999
Q ss_pred eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ 262 (441)
Q Consensus 183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (441)
+.++.||.+-|..+.|++.-+|+ +|+|.|.+||||+..+.+|+.++
T Consensus 86 lftL~GHlDYVRt~~FHheyPWI-lSASDDQTIrIWNwqsr~~iavl--------------------------------- 131 (1202)
T KOG0292|consen 86 LFTLLGHLDYVRTVFFHHEYPWI-LSASDDQTIRIWNWQSRKCIAVL--------------------------------- 131 (1202)
T ss_pred hhhhccccceeEEeeccCCCceE-EEccCCCeEEEEeccCCceEEEE---------------------------------
Confidence 99999999999999999999884 79999999999999988887654
Q ss_pred cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee-
Q 013545 263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV- 341 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~- 341 (441)
.+|.-.|+|..|+|....|+|+|-|.+||+||++..+....
T Consensus 132 --------------------------------------tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 132 --------------------------------------TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred --------------------------------------ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCC
Confidence 46777899999999999999999999999999974321100
Q ss_pred ----------------ee--------eeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCc--eEeeecccccce
Q 013545 342 ----------------NF--------ETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK--TCLTFRGHYEYV 394 (441)
Q Consensus 342 ----------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~--~~~~l~gh~~~v 394 (441)
.+ .-+..+..+..-+++.|.--++++++. ..||+|.+..-+ ++.+.+||.+.|
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnV 253 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNV 253 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCc
Confidence 00 011122333445667776677777776 479999985544 356889999999
Q ss_pred EEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 395 NCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 395 ~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
+|+-|+|....++|.|+|++|||||++.....
T Consensus 254 ssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 254 SSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred ceEEecCccceeEecCCCccEEEEecccccce
Confidence 99999999999999999999999999866544
No 57
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.5e-27 Score=205.46 Aligned_cols=254 Identities=19% Similarity=0.297 Sum_probs=198.9
Q ss_pred cccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-eeEEEeeccCCCCccEEEE-EeCCCcEEEEECCC
Q 013545 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAA-GTEDVQVRLCDIAS 179 (441)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~las-~s~d~~I~vwdl~~ 179 (441)
-.+.|.++.|++ +|.++++++.|.+++|||..+++.+.++.... .+....|.... ..++.+ -..|.+|++.++.+
T Consensus 13 ~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~--~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 13 TNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS--NTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC--ceEEEccCCCCCceEEEEeec
Confidence 345688888886 79999999999999999999999988776542 13334444322 223332 23488999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259 (441)
Q Consensus 180 ~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (441)
.++++.+.||...|.++..+|-++ .++|+|.|++||+||+|..+|...+..
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~---------------------------- 140 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNL---------------------------- 140 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEec----------------------------
Confidence 999999999999999999999987 578999999999999997665433210
Q ss_pred CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC-Cc
Q 013545 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG-RN 338 (441)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~-~~ 338 (441)
..-...+|.|.|-.+|++...+.|++||++.- +.
T Consensus 141 ---------------------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg 175 (311)
T KOG1446|consen 141 ---------------------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKG 175 (311)
T ss_pred ---------------------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCC
Confidence 11224689999999999988889999999864 22
Q ss_pred eeeeeeeEEec---cCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccce---EEEEEcCCCCeEEEeec
Q 013545 339 TLVNFETVRLQ---TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYV---NCCCFSSQDQELYTGGN 411 (441)
Q Consensus 339 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v---~~v~fspd~~~l~s~s~ 411 (441)
. +.+..+. ......+.+++||+.+++... +.+.+.|..+|....++.+|...- -...|+||++++++|+.
T Consensus 176 P---F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 176 P---FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD 252 (311)
T ss_pred C---ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence 2 2233332 234456889999998877655 678999999999999999887654 67899999999999999
Q ss_pred CCcEEEeCCCCCCCCCccCCc-cCC
Q 013545 412 DRQILVWCPSRHISDGVDAGP-MQD 435 (441)
Q Consensus 412 D~~i~vW~~~~~~~~~~~~~~-~~~ 435 (441)
||+|.+|++++++......|| ++.
T Consensus 253 dg~i~vw~~~tg~~v~~~~~~~~~~ 277 (311)
T KOG1446|consen 253 DGTIHVWNLETGKKVAVLRGPNGGP 277 (311)
T ss_pred CCcEEEEEcCCCcEeeEecCCCCCC
Confidence 999999999999987787776 443
No 58
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=207.52 Aligned_cols=303 Identities=17% Similarity=0.265 Sum_probs=212.7
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
++.||.+.|++++|+ ++|++|+|++.|++|+||++...+.. .|+.+.. ...++|. +.+.|.|.-..
T Consensus 81 ~LKgH~~~vt~~~Fs-SdGK~lat~~~Dr~Ir~w~~~DF~~~-------eHr~~R~---nve~dhp---T~V~FapDc~s 146 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFS-SDGKKLATISGDRSIRLWDVRDFENK-------EHRCIRQ---NVEYDHP---TRVVFAPDCKS 146 (420)
T ss_pred hhhccCCceeeeEEc-CCCceeEEEeCCceEEEEecchhhhh-------hhhHhhc---cccCCCc---eEEEECCCcce
Confidence 467999999999998 68999999999999999999865421 2222110 1123454 34566664455
Q ss_pred EEEEEeCCCcEEEEECCC---CeEEEEEe------cC----CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545 118 LFVTGSYDHYVKVWDTNC---TRVVMNFK------MP----GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~---~~~~~~~~------~~----~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~ 184 (441)
+++++-.-.++++|.... |.....+. ++ -.+..+.+. .+..+|++++.|..|.+|+++ |+.+.
T Consensus 147 ~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA---~~~k~imsas~dt~i~lw~lk-Gq~L~ 222 (420)
T KOG2096|consen 147 VVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA---GNAKYIMSASLDTKICLWDLK-GQLLQ 222 (420)
T ss_pred EEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec---CCceEEEEecCCCcEEEEecC-Cceee
Confidence 677777778899986531 22111110 01 011222222 245689999999999999998 88888
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR 264 (441)
Q Consensus 185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (441)
.+......-.-.+.||+|+ ++++++.--.|++|.+--++
T Consensus 223 ~idtnq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~k---------------------------------------- 261 (420)
T KOG2096|consen 223 SIDTNQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTK---------------------------------------- 261 (420)
T ss_pred eeccccccccceeeCCCCc-EEEEecCCCCceEEEEEecc----------------------------------------
Confidence 7766555556778899997 57888888999999853110
Q ss_pred cCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc------
Q 013545 265 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN------ 338 (441)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~------ 338 (441)
+| .+.. ....-.+++|...|..++||++...++|.|.||++|+||+.-...
T Consensus 262 --dG---------------~fqe------v~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 262 --DG---------------TFQE------VKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred --Cc---------------chhh------hhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence 00 0000 000012568999999999999999999999999999999863210
Q ss_pred eeeeeeeEEe--ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeee-cccccceEEEEEcCCCCeEEEeecCCcE
Q 013545 339 TLVNFETVRL--QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQI 415 (441)
Q Consensus 339 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l-~gh~~~v~~v~fspd~~~l~s~s~D~~i 415 (441)
.+.... ..+ ....++++..+|++..+++.....++++...+|+...++ +.|...|.|++|+|||++++|+| |+.+
T Consensus 319 ~Lk~g~-~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~v 396 (420)
T KOG2096|consen 319 ILKEGS-APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYV 396 (420)
T ss_pred HhhcCC-cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceee
Confidence 111110 111 235578999999999999999999999999999887766 47889999999999999999998 8888
Q ss_pred EEeC-CCCCC
Q 013545 416 LVWC-PSRHI 424 (441)
Q Consensus 416 ~vW~-~~~~~ 424 (441)
|+.. .+.++
T Consensus 397 rv~~ntpg~~ 406 (420)
T KOG2096|consen 397 RVIRNTPGWH 406 (420)
T ss_pred eeecCCCchh
Confidence 9885 55444
No 59
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=1.7e-27 Score=205.49 Aligned_cols=255 Identities=20% Similarity=0.347 Sum_probs=205.0
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC-eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT-RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwd 176 (441)
..||++.|..+.|.| ++..|||||.|+.|.+|++-.. +-....+ +.+.+..+.+..++ ..+.+++.|..++.||
T Consensus 43 l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~---s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG---SHILSCGTDKTVRGWD 118 (338)
T ss_pred cCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC---CEEEEecCCceEEEEe
Confidence 358999999999998 8999999999999999996422 2223333 45668888887754 4788999999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256 (441)
Q Consensus 177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (441)
.++|+.++.+++|..-|.++.-+.-|..++.|++.|+++|+||+|+..++.+++.
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~------------------------- 173 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN------------------------- 173 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-------------------------
Confidence 9999999999999999999885555666888999999999999997544433211
Q ss_pred CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
.-.++++.|..++..+.+|+-|+.|++||+...
T Consensus 174 -----------------------------------------------kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~ 206 (338)
T KOG0265|consen 174 -----------------------------------------------KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN 206 (338)
T ss_pred -----------------------------------------------ceeEEEEEecccccceeeccccCceeeeccccC
Confidence 123789999999999999999999999999876
Q ss_pred CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccC----CceEeeecccc----cceEEEEEcCCCCeEE
Q 013545 337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWS----GKTCLTFRGHY----EYVNCCCFSSQDQELY 407 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~----~~~~~~l~gh~----~~v~~v~fspd~~~l~ 407 (441)
.. .+....+.+.+..++.++++..+.+-+. .++++||+.- ..++..+.||. .-...++|||++..+.
T Consensus 207 d~----~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ 282 (338)
T KOG0265|consen 207 DG----LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT 282 (338)
T ss_pred cc----eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc
Confidence 53 3455566777888899999998887665 5899999843 34577888874 3467789999999999
Q ss_pred EeecCCcEEEeCCCCCCCCCccCCcc
Q 013545 408 TGGNDRQILVWCPSRHISDGVDAGPM 433 (441)
Q Consensus 408 s~s~D~~i~vW~~~~~~~~~~~~~~~ 433 (441)
.|+.|+.+.+||...-+..+.+-|-|
T Consensus 283 ags~dr~vyvwd~~~r~~lyklpGh~ 308 (338)
T KOG0265|consen 283 AGSADRFVYVWDTTSRRILYKLPGHY 308 (338)
T ss_pred cccccceEEEeecccccEEEEcCCcc
Confidence 99999999999998766666666654
No 60
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=207.74 Aligned_cols=291 Identities=21% Similarity=0.379 Sum_probs=219.3
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+.||...|+.++... ....+.|+|.|.+.+||.++++.++. ...||.+.|+++.|++ .+.
T Consensus 143 e~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~-----------------~Y~GH~GSVNsikfh~-s~~ 203 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLA-----------------TYTGHTGSVNSIKFHN-SGL 203 (481)
T ss_pred hhcccccceeeehhhc-CCcceeecccccceeEEeecccccee-----------------eecccccceeeEEecc-ccc
Confidence 4569999999998863 34589999999999999999887631 2348999999999987 588
Q ss_pred EEEEEeCCCcEEEEECC----CCe------------------------------------EEEEEecCCeeEEEeeccCC
Q 013545 118 LFVTGSYDHYVKVWDTN----CTR------------------------------------VVMNFKMPGKVYRTAMSPLA 157 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~----~~~------------------------------------~~~~~~~~~~~~~~~~~~~~ 157 (441)
+++|+|.|++..||... ..+ +++.++ ++...+..+..-
T Consensus 204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt--gH~~vV~a~dWL 281 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT--GHRAVVSACDWL 281 (481)
T ss_pred eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee--ccccceEehhhh
Confidence 99999999999999611 000 000010 110001111111
Q ss_pred CCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCcccc
Q 013545 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLG 237 (441)
Q Consensus 158 ~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~ 237 (441)
.+...+++++.|.+..+||+++|+++..+.||..+.+-+.-+|..+ +++++|.|.+.|+||+|.. +
T Consensus 282 ~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFRea--I----------- 347 (481)
T KOG0300|consen 282 AGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREA--I----------- 347 (481)
T ss_pred cCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcce-EEEEeccCceeEeccchhh--c-----------
Confidence 2345678899999999999999999999999999999999999865 7899999999999998731 0
Q ss_pred CCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC
Q 013545 238 RRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM 317 (441)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 317 (441)
.....+.+|.+.|+++.|..|.
T Consensus 348 ---------------------------------------------------------~sV~VFQGHtdtVTS~vF~~dd- 369 (481)
T KOG0300|consen 348 ---------------------------------------------------------QSVAVFQGHTDTVTSVVFNTDD- 369 (481)
T ss_pred ---------------------------------------------------------ceeeeecccccceeEEEEecCC-
Confidence 0011246899999999998665
Q ss_pred EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEe----eeccccc
Q 013545 318 YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCL----TFRGHYE 392 (441)
Q Consensus 318 ~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~----~l~gh~~ 392 (441)
.+++||.|.+|++||+.+.+..+ .+++. .+....++.+....+++.+.. ..+|+||+.-..+.. .-+||..
T Consensus 370 ~vVSgSDDrTvKvWdLrNMRspl---ATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR 445 (481)
T KOG0300|consen 370 RVVSGSDDRTVKVWDLRNMRSPL---ATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR 445 (481)
T ss_pred ceeecCCCceEEEeeeccccCcc---eeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccce
Confidence 68899999999999999876543 33332 345566777777778888876 579999996544322 4579999
Q ss_pred ceEEEEEcCCC--CeEEEeecCCcEEEeCCCCCCC
Q 013545 393 YVNCCCFSSQD--QELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 393 ~v~~v~fspd~--~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
.|.|++|..+- .-|+|||-|+.+.-|.+.++.+
T Consensus 446 MV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~~ 480 (481)
T KOG0300|consen 446 MVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPTS 480 (481)
T ss_pred eeeeeeccccCcccccccccccceeeeeEecccCC
Confidence 99999999764 3388999999999999887654
No 61
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.5e-26 Score=195.95 Aligned_cols=288 Identities=17% Similarity=0.267 Sum_probs=221.5
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
+.+.+|...|-+++|+ .+|..|++|+.|+++++|+++..... .....+||.+.|.-++|.|+..
T Consensus 14 r~~~~~~~~v~Sv~wn-~~g~~lasgs~dktv~v~n~e~~r~~---------------~~~~~~gh~~svdql~w~~~~~ 77 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWN-CDGTKLASGSFDKTVSVWNLERDRFR---------------KELVYRGHTDSVDQLCWDPKHP 77 (313)
T ss_pred HHhhhhhhcceEEEEc-ccCceeeecccCCceEEEEecchhhh---------------hhhcccCCCcchhhheeCCCCC
Confidence 3456899999999998 56889999999999999999765321 1234568999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v 196 (441)
++|++++.|++|++||++.++++......+...-+.++|++ ..++++..|..|...|.++.+.....+ ..-.+.-+
T Consensus 78 d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g---~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDG---EYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred cceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCC---CEEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 99999999999999999999999888877777777888864 478889999999999998877665543 45567788
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
.|+.++..+|++ ...|.|.|-.....+.+
T Consensus 154 ~w~~~nd~Fflt-~GlG~v~ILsypsLkpv-------------------------------------------------- 182 (313)
T KOG1407|consen 154 SWNNSNDLFFLT-NGLGCVEILSYPSLKPV-------------------------------------------------- 182 (313)
T ss_pred eecCCCCEEEEe-cCCceEEEEeccccccc--------------------------------------------------
Confidence 888777655554 44678877654322111
Q ss_pred ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL 356 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (441)
...++|...-.+|.|+|+|+|+|+|++|..+.+||+...- ....+....-+..++
T Consensus 183 ---------------------~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi----C~R~isRldwpVRTl 237 (313)
T KOG1407|consen 183 ---------------------QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI----CERCISRLDWPVRTL 237 (313)
T ss_pred ---------------------cccccCCcceEEEEECCCCceEeeccccceeeccChhHhh----hheeeccccCceEEE
Confidence 1135677777889999999999999999999999997421 111222223345578
Q ss_pred EeeCCCcEEEEeCCC-ceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC---------CcEEEeCCC
Q 013545 357 ATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND---------RQILVWCPS 421 (441)
Q Consensus 357 ~~~~~~~~~~~~~~~-~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D---------~~i~vW~~~ 421 (441)
+++.|+.++++++.. .+-|=++.+|..+..+. |+++...|+|+|...+||-+..| +++|++-.+
T Consensus 238 SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred EeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 999999999888664 56666778888888877 88999999999998888866554 567776544
No 62
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.6e-26 Score=196.85 Aligned_cols=208 Identities=23% Similarity=0.354 Sum_probs=157.8
Q ss_pred cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe---EEEEEe--cCCeeEEEeeccCCCCccEEEEEeCCCcE
Q 013545 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR---VVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQV 172 (441)
Q Consensus 98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~las~s~d~~I 172 (441)
...+|++.+..++++|..|..|||||.|+.||+|+...+. +...+. +...+++++++|.+. +||+||-|.++
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~---~La~aSFD~t~ 85 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR---YLASASFDATV 85 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc---EEEEeeccceE
Confidence 3468999999999998557789999999999999988432 222221 334588999999754 99999999999
Q ss_pred EEEECCCC--ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545 173 RLCDIASG--AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 173 ~vwdl~~~--~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
-||.-..+ +++.+|.||..+|-|++|+++|. +||+||.|++|-||.+.....+...
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~--------------------- 143 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECI--------------------- 143 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEE---------------------
Confidence 99998766 56788999999999999999997 5899999999999988644322211
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL 330 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~ 330 (441)
..+..|...|-.+.|+|.-..|+|+|.|.+|++
T Consensus 144 -----------------------------------------------aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~ 176 (312)
T KOG0645|consen 144 -----------------------------------------------AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKV 176 (312)
T ss_pred -----------------------------------------------eeeccccccccEEEEcCCcceeEEeccCCeEEE
Confidence 113457777889999999999999999999999
Q ss_pred eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee
Q 013545 331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG 410 (441)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s 410 (441)
|.-..+. +..+..+|.+|+.-|++++|+|.|..|++++
T Consensus 177 ~~~~~dd------------------------------------------dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 177 YRDEDDD------------------------------------------DWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred EeecCCC------------------------------------------CeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 9754211 1233445556666666666666666666666
Q ss_pred cCCcEEEeC
Q 013545 411 NDRQILVWC 419 (441)
Q Consensus 411 ~D~~i~vW~ 419 (441)
.|++++||.
T Consensus 215 dD~tv~Iw~ 223 (312)
T KOG0645|consen 215 DDGTVSIWR 223 (312)
T ss_pred CCcceEeee
Confidence 666666665
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=3.7e-28 Score=221.80 Aligned_cols=255 Identities=20% Similarity=0.325 Sum_probs=194.8
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC-CeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-TRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwd 176 (441)
..||+.+|+++.|+|..+.+|+|+|.|+.|+||++-. +.+++++..+ ..+..+.++..+. -+.+++-|..|++||
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~---~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT---SFLSASFDRFLKLWD 286 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC---eeeeeecceeeeeec
Confidence 4699999999999998899999999999999999865 7888888754 4577777777643 578899999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256 (441)
Q Consensus 177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (441)
++||+++..+.. ...+.|+.|+|++..+|++|+.|+.|+.||+|+++.++.+
T Consensus 287 tETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY--------------------------- 338 (503)
T KOG0282|consen 287 TETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY--------------------------- 338 (503)
T ss_pred cccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH---------------------------
Confidence 999999887752 3456899999999778999999999999999986532211
Q ss_pred CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
..|-+.|..+.|-++|.++++.+.|++++||+....
T Consensus 339 --------------------------------------------d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 339 --------------------------------------------DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred --------------------------------------------HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence 135678999999999999999999999999998865
Q ss_pred CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCC-ceEEEEccC---CceEeeecccc--cceEEEEEcCCCCeEEEee
Q 013545 337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWS---GKTCLTFRGHY--EYVNCCCFSSQDQELYTGG 410 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~wd~~~---~~~~~~l~gh~--~~v~~v~fspd~~~l~s~s 410 (441)
-.... .... ..-...++...|.+..++.-+.. .+-++.+.. ...-+.|.||. +.-..|.|||||++|+||+
T Consensus 375 v~ik~-i~~~--~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 375 VPIKN-IADP--EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred ccchh-hcch--hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence 32110 0000 01112345566666665554443 445554322 22335788895 5678899999999999999
Q ss_pred cCCcEEEeCCCCCCCCCccCC
Q 013545 411 NDRQILVWCPSRHISDGVDAG 431 (441)
Q Consensus 411 ~D~~i~vW~~~~~~~~~~~~~ 431 (441)
.||.+.+||..+-++-..+..
T Consensus 452 sdG~v~~wdwkt~kl~~~lka 472 (503)
T KOG0282|consen 452 SDGKVNFWDWKTTKLVSKLKA 472 (503)
T ss_pred CCccEEEeechhhhhhhcccc
Confidence 999999999998876655443
No 64
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5.2e-27 Score=223.01 Aligned_cols=312 Identities=18% Similarity=0.282 Sum_probs=231.7
Q ss_pred CCCCceeEEEccCCC----------CcEEEEeeCCCcEEEEECCCCcc---cCCCCcee--ccceeEE------------
Q 013545 41 PHKGSINSLQVDLTE----------ERYLLSGASDSSVAVYDVQRATD---YEGGGHIA--KHRSVFV------------ 93 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~----------~~~l~s~s~Dg~i~iwd~~~~~~---~~~~~~~~--~~~~~~~------------ 93 (441)
-|...|+.+..-|-+ ..-++|+|.|+|||+||+..... |... .+. ..+.++.
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRN-ils~~l~ki~y~d~~~q~~~d~~~ 445 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRN-ILSANLSKIPYEDSTQQIMHDASA 445 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecc-cchhhhhcCccccCchhhhhhccC
Confidence 377777776533311 12489999999999999875331 1100 000 0000010
Q ss_pred ----eecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeC
Q 013545 94 ----VDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTE 168 (441)
Q Consensus 94 ----~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~ 168 (441)
.......+.+.++.+++++| ++++||+|..-|++|++|+..-+....+. ++..+.++.++.......+||+++-
T Consensus 446 ~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 446 GIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred CcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence 00112235677899999988 89999999999999999997666544443 4567888888876666789999999
Q ss_pred CCcEEEEECCCC-ceeeeecCCCCCeEEEEEecCC-CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccc
Q 013545 169 DVQVRLCDIASG-AISQTLSGHRDGIMTVEWSTSS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK 246 (441)
Q Consensus 169 d~~I~vwdl~~~-~~~~~l~~h~~~v~~v~fsp~~-~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (441)
|.-|+|||.... .+++++.+|...|++|.|..+| +..++|++.|+.|.+--.++...-+.+
T Consensus 525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f----------------- 587 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF----------------- 587 (1080)
T ss_pred CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec-----------------
Confidence 999999999765 4678999999999999998775 345889999998875433211100000
Q ss_pred ccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC
Q 013545 247 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS 326 (441)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~ 326 (441)
. ..........+..|++.|..+++++++.|+
T Consensus 588 ----------------------------------~---------------r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr 618 (1080)
T KOG1408|consen 588 ----------------------------------P---------------RHTQTLSKTTLYDMAVDPTSKLVVTVCQDR 618 (1080)
T ss_pred ----------------------------------c---------------ccccccccceEEEeeeCCCcceEEEEeccc
Confidence 0 000011124588999999999999999999
Q ss_pred cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCe
Q 013545 327 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE 405 (441)
Q Consensus 327 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~ 405 (441)
.|+|||+++++.. ..|+.-..+.+..+.+...|++-++++.|. .++-++|..+|+++.+..||...|+.|.|++|.++
T Consensus 619 nirif~i~sgKq~-k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkH 697 (1080)
T KOG1408|consen 619 NIRIFDIESGKQV-KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKH 697 (1080)
T ss_pred ceEEEecccccee-eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchh
Confidence 9999999998753 334444445577888999999999998876 68999999999999999999999999999999999
Q ss_pred EEEeecCCcEEEeCCC
Q 013545 406 LYTGGNDRQILVWCPS 421 (441)
Q Consensus 406 l~s~s~D~~i~vW~~~ 421 (441)
|+|.+.|+.|.||.++
T Consensus 698 lISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 698 LISVSGDGCIFVWKLP 713 (1080)
T ss_pred heeecCCceEEEEECc
Confidence 9999999999999987
No 65
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4.7e-26 Score=223.36 Aligned_cols=263 Identities=17% Similarity=0.209 Sum_probs=185.1
Q ss_pred CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 121 (441)
|-..|+....++ ++..+++++.+..+..|+...+.............. ......||++.|.++.|+|.++.+|+|
T Consensus 19 ~~~~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~----~~~~l~GH~~~V~~v~fsP~d~~~LaS 93 (493)
T PTZ00421 19 HFLNVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLAS----NPPILLGQEGPIIDVAFNPFDPQKLFT 93 (493)
T ss_pred ceeccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCC----CCceEeCCCCCEEEEEEcCCCCCEEEE
Confidence 344566566654 344588999999999998754321100000000000 001235899999999999877889999
Q ss_pred EeCCCcEEEEECCCCe-------EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545 122 GSYDHYVKVWDTNCTR-------VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (441)
Q Consensus 122 gs~D~~i~iWd~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v 193 (441)
||.|++|++||+.++. ++..+. +...+..+.|+|.. ..+|++|+.|+.|++||+++++.+..+.+|...|
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V 171 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC--CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence 9999999999997642 233343 34568888898853 3589999999999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
.+++|+|++. +|++++.|++|++||+++++....+
T Consensus 172 ~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl-------------------------------------------- 206 (493)
T PTZ00421 172 TSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSV-------------------------------------------- 206 (493)
T ss_pred EEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEE--------------------------------------------
Confidence 9999999987 5799999999999999976543322
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccC-eEEEEEccCCCEEEEee----cCCcEEEeeCCCCCceeeeeeeEEe
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSAG----SDSRIRLWDVESGRNTLVNFETVRL 348 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sgs----~D~~i~~wd~~~~~~~~~~~~~~~~ 348 (441)
.+|.+. +..+.|++++..+++++ .|++|++||+.+..... ....
T Consensus 207 ---------------------------~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~---~~~~- 255 (493)
T PTZ00421 207 ---------------------------EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY---STVD- 255 (493)
T ss_pred ---------------------------ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce---eEec-
Confidence 123222 33567888887777654 58999999997643211 0000
Q ss_pred ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee-cCCcEEEeCCCCCCCC
Q 013545 349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVWCPSRHISD 426 (441)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s-~D~~i~vW~~~~~~~~ 426 (441)
..+...+....|+||+++|++|+ .|++|++|++..+...
T Consensus 256 ---------------------------------------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 256 ---------------------------------------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred ---------------------------------------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 01223456677899999988877 4999999999876643
No 66
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-26 Score=216.44 Aligned_cols=202 Identities=21% Similarity=0.356 Sum_probs=167.4
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
-+|.+..|-+ --+++++||.|..|||||..+++.. ..+.+|.+-|.+++.+| ..++++|+|
T Consensus 56 ~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV-----------------~~FeAH~DyIR~iavHP-t~P~vLtsS 116 (794)
T KOG0276|consen 56 VPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKV-----------------KTFEAHSDYIRSIAVHP-TLPYVLTSS 116 (794)
T ss_pred cchhhheeee-ccceEEEecCCceEEEEecccceee-----------------EEeeccccceeeeeecC-CCCeEEecC
Confidence 3555566653 2468999999999999999877532 23458999999999998 467999999
Q ss_pred CCCcEEEEECCCC-eEEEEEecCC-eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545 124 YDHYVKVWDTNCT-RVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS 201 (441)
Q Consensus 124 ~D~~i~iWd~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~ 201 (441)
+|-+||+||-+.. .+.+++..+. -+++++|.|.. ...+||++.|.+|+||.+.+..+..++.||...|.||.|-+.
T Consensus 117 DDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD--~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~ 194 (794)
T KOG0276|consen 117 DDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD--PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTG 194 (794)
T ss_pred CccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC--ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccC
Confidence 9999999998643 4566666543 47888888854 467999999999999999999999999999999999999876
Q ss_pred C-CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545 202 S-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280 (441)
Q Consensus 202 ~-~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (441)
+ +-.|+||+.|.+|++||..+..|++++
T Consensus 195 gdkpylIsgaDD~tiKvWDyQtk~CV~TL--------------------------------------------------- 223 (794)
T KOG0276|consen 195 GDKPYLISGADDLTIKVWDYQTKSCVQTL--------------------------------------------------- 223 (794)
T ss_pred CCcceEEecCCCceEEEeecchHHHHHHh---------------------------------------------------
Confidence 4 235799999999999999887776654
Q ss_pred CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
.+|...|..+.|+|.-..|+|||.||++|||+-.+.+
T Consensus 224 --------------------eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 224 --------------------EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred --------------------hcccccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence 3577789999999999999999999999999987654
No 67
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.1e-25 Score=207.51 Aligned_cols=248 Identities=29% Similarity=0.475 Sum_probs=200.6
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
..+|+..|.++.+++ ++++|++++.|+.|++||+.++.....+... ..+..+.+.+.. ..+++++.|+.|++||+
T Consensus 5 ~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 5 LKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG---TYLASGSSDKTIRLWDL 80 (289)
T ss_pred hcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC---CEEEEEcCCCeEEEEEc
Confidence 347999999999987 6889999999999999999888766555443 445567777653 47888889999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
++++.+..+.+|...+.++.|+|+++ ++++++.|+.|++||+++++....+
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~---------------------------- 131 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTL---------------------------- 131 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEe----------------------------
Confidence 99888888999999999999999865 6777777999999999754332211
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
..|...+.+++|+|++.++++++.|+.|++||+.+++
T Consensus 132 -------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 168 (289)
T cd00200 132 -------------------------------------------RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168 (289)
T ss_pred -------------------------------------------ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence 1355679999999999999999889999999998655
Q ss_pred ceeeeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEE
Q 013545 338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQIL 416 (441)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~ 416 (441)
... ....+......+.+.+++..+++++ .+.+++||+.+++....+.+|..++.+++|+|++.++++++.|+.|+
T Consensus 169 ~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~ 244 (289)
T cd00200 169 CVA----TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR 244 (289)
T ss_pred cce----eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEE
Confidence 321 2222334566788888887666665 57899999999999999989999999999999998999998899999
Q ss_pred EeCCCCCCCC
Q 013545 417 VWCPSRHISD 426 (441)
Q Consensus 417 vW~~~~~~~~ 426 (441)
+|+..++...
T Consensus 245 i~~~~~~~~~ 254 (289)
T cd00200 245 VWDLRTGECV 254 (289)
T ss_pred EEEcCCceeE
Confidence 9999865543
No 68
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.5e-25 Score=193.01 Aligned_cols=292 Identities=19% Similarity=0.288 Sum_probs=220.9
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
++..-.+.|++|.|+ ++|.+|++++.|.+++|||..+++... ...-++.+|..+.|.+.+.
T Consensus 9 ~f~~~~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~-----------------ti~skkyG~~~~~Fth~~~- 69 (311)
T KOG1446|consen 9 VFRETNGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVK-----------------TINSKKYGVDLACFTHHSN- 69 (311)
T ss_pred ccccCCCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceee-----------------EeecccccccEEEEecCCc-
Confidence 444456889999999 468899999999999999998775321 1123555677777766444
Q ss_pred EEEEEeC--CCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545 118 LFVTGSY--DHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (441)
Q Consensus 118 ~l~sgs~--D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~ 194 (441)
.++.++. |.+||+-++.+.+.++.|+.+ ..|.++..+|.. ..+.|++.|.+|++||++..++...+.- ..-.
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~---d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~p 144 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD---DTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRP 144 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC---CeEEecccCCeEEeeEecCCCCceEEec--CCCc
Confidence 4444444 999999999999999999854 458888888864 4788999999999999998887766542 2335
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCC--ceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRA--GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (441)
.++|.|.|- +||.+...+.|++||+|+. +.+..+..
T Consensus 145 i~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i----------------------------------------- 182 (311)
T KOG1446|consen 145 IAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSI----------------------------------------- 182 (311)
T ss_pred ceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEcc-----------------------------------------
Confidence 678999985 6788777779999999853 11111100
Q ss_pred ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352 (441)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~ 352 (441)
...-....+.|.|||||++|+-++..+.+++.|.-+|.. ...+.........
T Consensus 183 ---------------------------~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~-~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 183 ---------------------------TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV-KSTFSGYPNAGNL 234 (311)
T ss_pred ---------------------------CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE-eeeEeeccCCCCc
Confidence 001123478899999999999999999999999988863 2233333333345
Q ss_pred ceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc-cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 353 PIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g-h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
+....+.||+..++++.. +.+.+|++.+++.+..+++ |..++.|+.|+|.--++||+ +..+-.|-+..+.+
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDAL 307 (311)
T ss_pred ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecccccc
Confidence 677889999999998877 7999999999999999999 79999999999977677776 66788998876553
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=3.9e-26 Score=205.90 Aligned_cols=278 Identities=19% Similarity=0.315 Sum_probs=221.9
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
..+.++...|. ...++||+.|.++.++|...... ...+.||...|+.+.+++ +...+++++
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~-----------------l~~~~Gh~kki~~v~~~~-~~~~v~~aS 280 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQI-----------------LATLKGHTKKITSVKFHK-DLDTVITAS 280 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecchhhh-----------------hhhccCcceEEEEEEecc-chhheeecC
Confidence 47888888764 56799999999999999865432 134569999999999987 677899999
Q ss_pred CCCcEEEEECCCCeE-EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC--CCCCeEEEEEec
Q 013545 124 YDHYVKVWDTNCTRV-VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG--HRDGIMTVEWST 200 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~--h~~~v~~v~fsp 200 (441)
.|..|++|.+-.... .....+.+++..+..++.+ .+|.+++.|+.+-..|++++..+..... ..-.+++++|+|
T Consensus 281 ad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg---eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 281 ADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG---EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred CcceEEeeccccccCccccccccccceeeeeccCC---cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence 999999998765443 2333466788888888754 4899999999999999999987655543 334589999999
Q ss_pred CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545 201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280 (441)
Q Consensus 201 ~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (441)
||- +|.+|..|+.|+|||+.++...
T Consensus 358 DgL-ifgtgt~d~~vkiwdlks~~~~------------------------------------------------------ 382 (506)
T KOG0289|consen 358 DGL-IFGTGTPDGVVKIWDLKSQTNV------------------------------------------------------ 382 (506)
T ss_pred Cce-EEeccCCCceEEEEEcCCcccc------------------------------------------------------
Confidence 985 8999999999999999764210
Q ss_pred CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC-cceEEEee
Q 013545 281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS-KPIQLATT 359 (441)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 359 (441)
..+.+|.++|.+|+|+.+|-+||++..|+.|++||+++.++ +.++.+... ....+.+.
T Consensus 383 -----------------a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n----~kt~~l~~~~~v~s~~fD 441 (506)
T KOG0289|consen 383 -----------------AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN----FKTIQLDEKKEVNSLSFD 441 (506)
T ss_pred -----------------ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc----cceeeccccccceeEEEc
Confidence 12346999999999999999999999999999999997653 445444432 45678888
Q ss_pred CCCcEEEEeCCCceEEEEcc----CCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 360 QDPAVVFVPCMTAVKAFDIW----SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 360 ~~~~~~~~~~~~~~~~wd~~----~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
..|.++..+ +..++++-.. ++.+..++..|.+..+++.|...-++++++|.|...++...
T Consensus 442 ~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 442 QSGTYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred CCCCeEEee-cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 889888776 5556665544 67788899999999999999999999999999999888754
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1e-26 Score=228.30 Aligned_cols=272 Identities=24% Similarity=0.372 Sum_probs=199.9
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
+.||++.|++++|. ..+++|+|||.|.++++||+.++.+. ..+.||...|.++... ..+
T Consensus 245 l~GH~g~V~~l~~~-~~~~~lvsgS~D~t~rvWd~~sg~C~-----------------~~l~gh~stv~~~~~~---~~~ 303 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFP-SGGDKLVSGSTDKTERVWDCSTGECT-----------------HSLQGHTSSVRCLTID---PFL 303 (537)
T ss_pred ccCCCCCceeEEEe-cCCCEEEEEecCCcEEeEecCCCcEE-----------------EEecCCCceEEEEEcc---Cce
Confidence 56999999999995 56789999999999999999887652 1234899989887664 458
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~ 197 (441)
+++||.|.+|++|++.++.++..+. +.+.|.++.+. ..++++|+.|+.|++||+.+++++++++||...|.++.
T Consensus 304 ~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 304 LVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLI 378 (537)
T ss_pred EeeccCCceEEEEeccCcceEEEeccccccEEEEEec-----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEE
Confidence 8999999999999999999999888 77788887776 24899999999999999999999999999999999998
Q ss_pred EecCCCcEEEEeecCCcEEEEEcCCC-ceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 198 WSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 198 fsp~~~~~l~s~s~Dg~I~iWD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
+.+. . .+++|+.|++|++||+++. +|..++
T Consensus 379 ~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl----------------------------------------------- 409 (537)
T KOG0274|consen 379 VDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTL----------------------------------------------- 409 (537)
T ss_pred ecCc-c-eEEeeeeccceEeecCCchhhhhhhh-----------------------------------------------
Confidence 8764 3 4789999999999999976 554433
Q ss_pred ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL 356 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (441)
.+|..-|..+. ..++.|++++.|++|++||.+.+..... ++.. +......+
T Consensus 410 ------------------------~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~-~~~~--~~~~v~~l 460 (537)
T KOG0274|consen 410 ------------------------QGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRT-LEGR--HVGGVSAL 460 (537)
T ss_pred ------------------------cCCcccccccc--cccceeEeccccccEEEeecccCceeee-eccC--CcccEEEe
Confidence 23444454433 4578999999999999999998764321 1110 11222222
Q ss_pred EeeCCCcEEEEeCCCceEEEEccCCceEeeecccc-cceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545 357 ATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVW 418 (441)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~-~~v~~v~fspd~~~l~s~s~D~~i~vW 418 (441)
... +...+.......+++||+.++++...+-.+. .....+++. + ...++......+.|
T Consensus 461 ~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 519 (537)
T KOG0274|consen 461 ALG-KEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAPS--S-PSFSTANVEAVQSW 519 (537)
T ss_pred ecC-cceEEEEecCCeeEEEecccCchhhhhhhcccccccccccC--C-Cccccccccccccc
Confidence 222 2334444455799999999998877663343 334444433 2 23334344444444
No 71
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.6e-25 Score=219.63 Aligned_cols=218 Identities=17% Similarity=0.312 Sum_probs=165.8
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
++.||.+.|++++|+|.++++|+|||.|++|+|||+.+...... ....+ ....+|...|.++.|+|....
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~-----~~~~l-----~~L~gH~~~V~~l~f~P~~~~ 139 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-----ISDPI-----VHLQGHTKKVGIVSFHPSAMN 139 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc-----cCcce-----EEecCCCCcEEEEEeCcCCCC
Confidence 56799999999999985677999999999999999975421100 00011 123589999999999986567
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe-EE
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-MT 195 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v-~~ 195 (441)
+|+||+.|++|+|||+.+++.+..+. +...+.++.+++++ .+|++++.|+.|++||+++++.+..+.+|.+.+ ..
T Consensus 140 iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG---~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~ 216 (493)
T PTZ00421 140 VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG---SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR 216 (493)
T ss_pred EEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC---CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence 99999999999999999998877776 45668899998854 489999999999999999999998999998754 46
Q ss_pred EEEecCCCcEEEEe---ecCCcEEEEEcCCCce-eeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 196 VEWSTSSEWILVTG---GCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 196 v~fsp~~~~~l~s~---s~Dg~I~iWD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
+.|.|++..++.+| +.|++|++||+++... +...+
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~----------------------------------------- 255 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD----------------------------------------- 255 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-----------------------------------------
Confidence 78888877544333 3479999999985321 00000
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEeeCCCCCc
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRN 338 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~wd~~~~~~ 338 (441)
..+...+....|++++.+|++++ .|++|++||+.+++.
T Consensus 256 -----------------------------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 256 -----------------------------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred -----------------------------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 00112355567999999998887 599999999987653
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.1e-27 Score=211.80 Aligned_cols=284 Identities=20% Similarity=0.324 Sum_probs=217.4
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
+-.|.++|..+.|-+ +...|+||+.|..|++|++...+. +. ..++.|-.++|..+.+-+ ++.+
T Consensus 171 ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~-~~--------------~~tLaGs~g~it~~d~d~-~~~~ 233 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKS-EL--------------ISTLAGSLGNITSIDFDS-DNKH 233 (459)
T ss_pred hhccccccceeEEcc-Ccchhhhcchhhhhhhhhcccchh-hh--------------hhhhhccCCCcceeeecC-CCce
Confidence 346899999999974 556899999999999999864431 10 123446667888888876 5789
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~ 197 (441)
+++++.|+.+++|++...+...++.. .+++....+.. ++..+++|+.|.+|++||+....+.+++-. .+.+..|.
T Consensus 234 ~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~---~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~ 309 (459)
T KOG0288|consen 234 VIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL---SHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIV 309 (459)
T ss_pred EEeecCCCceeeeeccchhhhhhhcccccceeeehhhc---cccceeeccccchhhhhhhhhhheeccccc-cccccceE
Confidence 99999999999999998888777664 35565555543 233488999999999999999887766431 23334444
Q ss_pred EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 277 (441)
Q Consensus 198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
.++ ..++||..|++||+||+|+..+.....
T Consensus 310 ~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~----------------------------------------------- 339 (459)
T KOG0288|consen 310 CSI---SDVISGHFDKKVRFWDIRSADKTRSVP----------------------------------------------- 339 (459)
T ss_pred ecc---eeeeecccccceEEEeccCCceeeEee-----------------------------------------------
Confidence 443 247899999999999999765443221
Q ss_pred cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc-CcceEE
Q 013545 278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT-SKPIQL 356 (441)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~ 356 (441)
-.+.|++|..+++|..|.+.+.|.++.+.|+++.... ..+....+.. .....+
T Consensus 340 -------------------------~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~-~~~sA~g~k~asDwtrv 393 (459)
T KOG0288|consen 340 -------------------------LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIR-QTFSAEGFKCASDWTRV 393 (459)
T ss_pred -------------------------cCcceeeEeeccCCeEEeeecCCCceeeeecccccEE-EEeecccccccccccee
Confidence 1246999999999999999999999999999976432 2222222222 234568
Q ss_pred EeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccc--eEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 357 ATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY--VNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 357 ~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~--v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
.|+|++.+++.++. +.+.+|++.++++...+...... |++++|+|-|..|++++.++.+++|.
T Consensus 394 vfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 89999999988765 78999999999998888776665 99999999999999999999999994
No 73
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.6e-26 Score=207.06 Aligned_cols=290 Identities=19% Similarity=0.298 Sum_probs=215.0
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEE---eecc-cccCcccceeEEEEe
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFV---VDKQ-HEHGHKYAISSAIWY 112 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~h~~~V~~~~~~ 112 (441)
.++..|..+|.+++++| ++++..+++.||+|.-|++.++..... .+.+ ..+.. ...+ ...+|...+.+++++
T Consensus 136 ~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~--i~~~-~ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRY--IIER-DEVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred eeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCccccc--cccc-chhhhhccCCCCcccccccceeEEEEEc
Confidence 45678999999999986 577999999999999999987764210 0000 00000 0011 114899999999998
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC
Q 013545 113 PVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (441)
Q Consensus 113 ~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~ 191 (441)
+ |+.+||||+.|..|.|||+.+.+.+..++. .+.+..++|.-- ..-+.+++.|..|++|+++.-.++.++-||.+
T Consensus 212 ~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g---t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 212 S-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG---TSELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred C-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC---ccceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 7 899999999999999999999998888664 466777777642 33578899999999999999999999999999
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
.|.+|.-..-.+ .+-.|+.|+++++|++.....
T Consensus 288 ~v~~IdaL~reR-~vtVGgrDrT~rlwKi~eesq---------------------------------------------- 320 (479)
T KOG0299|consen 288 GVLGIDALSRER-CVTVGGRDRTVRLWKIPEESQ---------------------------------------------- 320 (479)
T ss_pred ceeeechhcccc-eEEeccccceeEEEeccccce----------------------------------------------
Confidence 999998876654 444466999999999843110
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 351 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~ 351 (441)
-.+.+|.+.+-+++|-. ...++|||.||.|.+|++.+.++.+...........
T Consensus 321 --------------------------lifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~ 373 (479)
T KOG0299|consen 321 --------------------------LIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE 373 (479)
T ss_pred --------------------------eeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCC
Confidence 01234566788888864 457889999999999999987765432211111111
Q ss_pred --------cceEEEeeCCCcEEEEeCC-CceEEEEccCC----ceEeeecccccceEEEEEcCCCCeEEEe
Q 013545 352 --------KPIQLATTQDPAVVFVPCM-TAVKAFDIWSG----KTCLTFRGHYEYVNCCCFSSQDQELYTG 409 (441)
Q Consensus 352 --------~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~----~~~~~l~gh~~~v~~v~fspd~~~l~s~ 409 (441)
....++..+...++++++. +.+|+|.+.++ .++..++ -.+.|+.++|+++|++|++|
T Consensus 374 ~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 374 LDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence 3456777888888877755 78999999887 3455555 56789999999999977654
No 74
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.6e-25 Score=220.62 Aligned_cols=173 Identities=20% Similarity=0.367 Sum_probs=135.0
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
..+.+|.+.|++++|+|.++.+|+|||.||+|+|||+.+...... .+ ...+ ....+|...|.++.|+|...
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--~i--~~p~-----~~L~gH~~~V~sVaf~P~g~ 138 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--EI--KDPQ-----CILKGHKKKISIIDWNPMNY 138 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--cc--ccce-----EEeecCCCcEEEEEECCCCC
Confidence 356799999999999986678999999999999999975421100 00 0011 12347999999999998544
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE-
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT- 195 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~- 195 (441)
.+|+|+|.|++|+|||+.+++.+..+.+...+.++.|++++ .+|++++.|+.|++||+++++.+.++.+|.+.+.+
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG---~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~ 215 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKG---NLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTK 215 (568)
T ss_pred eEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCC---CEEEEEecCCEEEEEECCCCcEEEEEecccCCceeE
Confidence 46789999999999999999887777777778889998864 47888889999999999999999999999886543
Q ss_pred ----EEEecCCCcEEEEeecCC----cEEEEEcCC
Q 013545 196 ----VEWSTSSEWILVTGGCDG----AIRFWDIRR 222 (441)
Q Consensus 196 ----v~fsp~~~~~l~s~s~Dg----~I~iWD~~~ 222 (441)
..|++++.+ ++|++.|+ +|+|||++.
T Consensus 216 ~v~~~~fs~d~~~-IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 216 NIWIDGLGGDDNY-ILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEeeeEcCCCCE-EEEEEcCCCCccEEEEEECCC
Confidence 345578775 56767664 799999984
No 75
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=218.40 Aligned_cols=260 Identities=27% Similarity=0.406 Sum_probs=199.5
Q ss_pred CCCCcee---EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 41 PHKGSIN---SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 41 ~H~~~V~---~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.|-..|+ .|+.+.++++||.||+.||.|++|++......... ..+ .....|.+-|+.++... +++
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~------~~~-----asme~HsDWVNDiiL~~-~~~ 86 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPST------PYI-----ASMEHHSDWVNDIILCG-NGK 86 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCccc------chh-----hhhhhhHhHHhhHHhhc-CCC
Confidence 4556677 78888888899999999999999998654321100 000 11236888898887665 577
Q ss_pred EEEEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--ee--------e
Q 013545 118 LFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--IS--------Q 184 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~~--------~ 184 (441)
.|+|+|.|.+|++|+...+. +..++. +...+.+++.. .....++|||+.|+.|++||++++. .+ .
T Consensus 87 tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~--ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI--AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeec--ccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence 99999999999999987663 333332 23445566553 3356799999999999999999872 22 2
Q ss_pred eec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545 185 TLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK 263 (441)
Q Consensus 185 ~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (441)
.+. ||...|.+++..+.+. ++++|+..+.+|+||.++.+...
T Consensus 165 sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~kim------------------------------------ 207 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCKKIM------------------------------------ 207 (735)
T ss_pred cCCCCCccceeeeecCCcce-EEEecCcccceEEecccccccee------------------------------------
Confidence 233 8999999999999885 78999999999999998653111
Q ss_pred ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee
Q 013545 264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF 343 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~ 343 (441)
.+.+|...|..|..++||+.++|+|.||+|++||+...+
T Consensus 208 -----------------------------------kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr------ 246 (735)
T KOG0308|consen 208 -----------------------------------KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR------ 246 (735)
T ss_pred -----------------------------------eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc------
Confidence 135899999999999999999999999999999997432
Q ss_pred eeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545 344 ETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~ 423 (441)
++.++..|++.||.+..+|+=.++++|+.|+.|..=++.+.
T Consensus 247 ---------------------------------------Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 247 ---------------------------------------CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ---------------------------------------eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 23455669999999999999999999999999999988876
Q ss_pred CCCCccCC
Q 013545 424 ISDGVDAG 431 (441)
Q Consensus 424 ~~~~~~~~ 431 (441)
...-.+|.
T Consensus 288 ~~~tlick 295 (735)
T KOG0308|consen 288 AKSTLICK 295 (735)
T ss_pred hhheEeec
Confidence 54444443
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.7e-26 Score=206.39 Aligned_cols=278 Identities=23% Similarity=0.317 Sum_probs=212.1
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
..|.+|+|+|....-+|.+|. -.++||+..+.... ..+...+..|.++.|- .||.+||.|.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~-----------------k~~srFk~~v~s~~fR-~DG~LlaaGD 87 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR-----------------KTFSRFKDVVYSVDFR-SDGRLLAAGD 87 (487)
T ss_pred CcceeEecCCCCCCceEEecc-cEEEEEecchhhhh-----------------hhHHhhccceeEEEee-cCCeEEEccC
Confidence 689999999855433555444 46899997654321 1111234456666665 4899999999
Q ss_pred CCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545 124 YDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~ 202 (441)
..|.|+++|.++...+..+. +..++..+.|++. ++.+|++|++|+.+++||+.+...+..+.+|++-|.|.+|+|..
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~--d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~ 165 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ--DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN 165 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEEEeccc--CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC
Confidence 99999999976644444444 3456777788875 45789999999999999999988766899999999999999998
Q ss_pred CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545 203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282 (441)
Q Consensus 203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (441)
+.+++|||-||+||+||+|... -.+
T Consensus 166 ~hivvtGsYDg~vrl~DtR~~~-~~v------------------------------------------------------ 190 (487)
T KOG0310|consen 166 DHIVVTGSYDGKVRLWDTRSLT-SRV------------------------------------------------------ 190 (487)
T ss_pred CeEEEecCCCceEEEEEeccCC-cee------------------------------------------------------
Confidence 8899999999999999998531 000
Q ss_pred CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCC
Q 013545 283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362 (441)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (441)
....|..+|-.|.+-|.|..||+++.. .|++||+.++...+..+. -+.....++.+..++
T Consensus 191 ----------------~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~---~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 191 ----------------VELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMF---NHNKTVTCLRLASDS 250 (487)
T ss_pred ----------------EEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhh---cccceEEEEEeecCC
Confidence 012466789999999999999998755 699999997764432111 133445567777777
Q ss_pred cEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545 363 AVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418 (441)
Q Consensus 363 ~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW 418 (441)
..+++++. ..+++||..+.+..+.+. -.++|.+++.+||++.++.|-.||.+-+=
T Consensus 251 ~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeee
Confidence 88888766 689999998888888765 67899999999999999999999987665
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.5e-25 Score=210.03 Aligned_cols=273 Identities=19% Similarity=0.260 Sum_probs=213.5
Q ss_pred EEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcE
Q 013545 49 LQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYV 128 (441)
Q Consensus 49 l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i 128 (441)
|+|+ . .+.|+.| ....+.+|+..++... .+. ..+...|+++.|.+ +|.+||.|-.+++|
T Consensus 183 ldWs-s-~n~laVa-lg~~vylW~~~s~~v~-------------~l~----~~~~~~vtSv~ws~-~G~~LavG~~~g~v 241 (484)
T KOG0305|consen 183 LDWS-S-ANVLAVA-LGQSVYLWSASSGSVT-------------ELC----SFGEELVTSVKWSP-DGSHLAVGTSDGTV 241 (484)
T ss_pred hhcc-c-CCeEEEE-ecceEEEEecCCCceE-------------EeE----ecCCCceEEEEECC-CCCEEEEeecCCeE
Confidence 5565 2 3345544 5678999998766421 111 11267899999987 79999999999999
Q ss_pred EEEECCCCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee-ecCCCCCeEEEEEecCCCcE
Q 013545 129 KVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSGHRDGIMTVEWSTSSEWI 205 (441)
Q Consensus 129 ~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~-l~~h~~~v~~v~fsp~~~~~ 205 (441)
.|||+.+.+.+..+.. .+.+.++++. ...+.+|+.|+.|..+|+...+.... +.+|...|..++|++++. .
T Consensus 242 ~iwD~~~~k~~~~~~~~h~~rvg~laW~-----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~ 315 (484)
T KOG0305|consen 242 QIWDVKEQKKTRTLRGSHASRVGSLAWN-----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-Q 315 (484)
T ss_pred EEEehhhccccccccCCcCceeEEEecc-----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-e
Confidence 9999988887776665 4456666665 34789999999999999998876554 889999999999999997 5
Q ss_pred EEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCc
Q 013545 206 LVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV 285 (441)
Q Consensus 206 l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (441)
||||+.|+.+.|||.......
T Consensus 316 lASGgnDN~~~Iwd~~~~~p~----------------------------------------------------------- 336 (484)
T KOG0305|consen 316 LASGGNDNVVFIWDGLSPEPK----------------------------------------------------------- 336 (484)
T ss_pred eccCCCccceEeccCCCcccc-----------------------------------------------------------
Confidence 899999999999997432100
Q ss_pred ccccCCCcccccccceeeccCeEEEEEccC-CCEEEEe--ecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCC
Q 013545 286 RQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSA--GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362 (441)
Q Consensus 286 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sg--s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (441)
.....|...|.+++|+|= ...||+| +.|++|++||+.++..... ......+..+.+++..
T Consensus 337 ------------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~-----vdtgsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 337 ------------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS-----VDTGSQVCSLIWSKKY 399 (484)
T ss_pred ------------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc-----cccCCceeeEEEcCCC
Confidence 113468889999999995 4577775 7899999999998764221 1123556778888887
Q ss_pred cEEEEeCC---CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 363 AVVFVPCM---TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 363 ~~~~~~~~---~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
..+++..+ ..+.+|+..+-+.+..+.||...|..+++||||..++||+.|.++++|++-...
T Consensus 400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 66666533 479999999999999999999999999999999999999999999999987753
No 78
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.9e-26 Score=192.79 Aligned_cols=247 Identities=20% Similarity=0.317 Sum_probs=185.2
Q ss_pred eeEEEccCCCCcEEEEee-------CCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 46 INSLQVDLTEERYLLSGA-------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 46 V~~l~~s~~~~~~l~s~s-------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
=++++|||--.++|+.+. ..|++.|-++...... .+. ....-.+++..++|++...++
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi------------~e~---~s~d~~D~LfdV~Wse~~e~~ 75 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI------------QEC---QSYDTEDGLFDVAWSENHENQ 75 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCe------------EEE---EeeecccceeEeeecCCCcce
Confidence 367888876555554432 3467777776522210 000 011344577889999888889
Q ss_pred EEEEeCCCcEEEEECCC-CeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545 119 FVTGSYDHYVKVWDTNC-TRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v 196 (441)
+++++.||++||||+.. ..++..++. ...++++.+.+.. ...++++|.|++||+|+...++.++++.||...|...
T Consensus 76 ~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~--r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a 153 (311)
T KOG0277|consen 76 VIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVR--RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQA 153 (311)
T ss_pred EEEEecCceEEEeccCCCCcchhHHHhhhhheEEecccccc--ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEE
Confidence 99999999999999643 234555543 3457777777653 3355666999999999999999999999999999999
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
.|+|....+|+++|.|++++|||+|..+....
T Consensus 154 ~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~------------------------------------------------ 185 (311)
T KOG0277|consen 154 AFSPHIPNLFASASGDGTLRLWDVRSPGKFMS------------------------------------------------ 185 (311)
T ss_pred ecCCCCCCeEEEccCCceEEEEEecCCCceeE------------------------------------------------
Confidence 99999888999999999999999985321111
Q ss_pred ccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceE
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ 355 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 355 (441)
..+|...+.++.|+. +...|+||+.|+.||+||++..+.
T Consensus 186 -----------------------i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~----------------- 225 (311)
T KOG0277|consen 186 -----------------------IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT----------------- 225 (311)
T ss_pred -----------------------EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc-----------------
Confidence 235777899999986 556789999999999999986541
Q ss_pred EEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCC-CeEEEeecCCcEEEeCCCCCC
Q 013545 356 LATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~-~~l~s~s~D~~i~vW~~~~~~ 424 (441)
++-+|.||.-.|..|.|||-. ..|+|++-|.++|||++..+.
T Consensus 226 ---------------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 226 ---------------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred ---------------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 123457899999999999974 558899999999999998543
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-23 Score=174.28 Aligned_cols=305 Identities=21% Similarity=0.338 Sum_probs=217.1
Q ss_pred CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceecc-ceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKH-RSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~ 120 (441)
-+-+|.+++|.|. |.+.+.||+.++.||--......+.. ++.... .+.... +-.+-|++.|.|.+|+| +|+++|
T Consensus 31 dsqairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~-~hea~~~pp~v~~--kr~khhkgsiyc~~ws~-~gelia 105 (350)
T KOG0641|consen 31 DSQAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRH-AHEAAKQPPSVLC--KRNKHHKGSIYCTAWSP-CGELIA 105 (350)
T ss_pred chhheeeEEecCC-CceEEeccCCceEEEEccccccCccc-ccccccCCCeEEe--eeccccCccEEEEEecC-ccCeEE
Confidence 3467999999974 66889999999998864322111111 111111 112222 22346999999999998 899999
Q ss_pred EEeCCCcEEEEECCCCeE-----EEEEec-CCeeEEEeeccCCC-CccEEEEEeC-CCcEEEEECCCCceeeeecCCCCC
Q 013545 121 TGSYDHYVKVWDTNCTRV-----VMNFKM-PGKVYRTAMSPLAA-SHMLIAAGTE-DVQVRLCDIASGAISQTLSGHRDG 192 (441)
Q Consensus 121 sgs~D~~i~iWd~~~~~~-----~~~~~~-~~~~~~~~~~~~~~-~~~~las~s~-d~~I~vwdl~~~~~~~~l~~h~~~ 192 (441)
|||.|++|++--.+...+ ...+.+ .|.+..++|-.+.. +..+|++++. |-.|.+-|..+|...+.+.||++-
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH 185 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence 999999999976654332 233443 57788888865543 3456666653 567888899999999999999999
Q ss_pred eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (441)
|.++- +-++ ++|+|||.|.+||+||+|-..|+++++....-
T Consensus 186 ilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~------------------------------------- 226 (350)
T KOG0641|consen 186 ILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD------------------------------------- 226 (350)
T ss_pred EEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCcccC-------------------------------------
Confidence 98864 2233 57999999999999999988888776431100
Q ss_pred ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352 (441)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~ 352 (441)
+ .-..+.|.+|++.|.|++|++|-+|..+.+||++.++... .|+ .+...
T Consensus 227 -------------------~--------glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq-~f~---phsad 275 (350)
T KOG0641|consen 227 -------------------G--------GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ-RFH---PHSAD 275 (350)
T ss_pred -------------------C--------CcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee-eeC---CCccc
Confidence 0 0013569999999999999999999999999999887432 222 23344
Q ss_pred ceEEEeeCCCcEEEEeCC-CceEEEEccC----CceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 353 PIQLATTQDPAVVFVPCM-TAVKAFDIWS----GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~-~~~~~wd~~~----~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
..++-++|...+++..+- ..+++=|+-. .-...+...|++.+-.+.|+|..-.++|.|.|+++.+|..+
T Consensus 276 ir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 276 IRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 556777787777666544 3677776621 12233556799999999999999889999999999999764
No 80
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.1e-25 Score=199.85 Aligned_cols=274 Identities=19% Similarity=0.279 Sum_probs=193.8
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS 179 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~ 179 (441)
.|.+-|.++... ++.++||++||++|+||.+ |+..+++. +.+.+..+++.........+++++.|.++++|-.+.
T Consensus 103 ~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA---SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc---CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 577778777664 5689999999999999986 55555554 456676666655444455799999999999999988
Q ss_pred Cce----eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545 180 GAI----SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS 255 (441)
Q Consensus 180 ~~~----~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (441)
+.. ++..+||...|.+|+..+++. .++|||.|.+|+||+..+. ....+|.....
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~-~~~~~E~~s~~-------------------- 236 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETD-EEDELESSSNR-------------------- 236 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCC-ccccccccchh--------------------
Confidence 754 344569999999999999987 5799999999999993321 11111110000
Q ss_pred cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545 256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~ 335 (441)
.+....+ .-..+.-.....+.+|..+|.+|.|++ ...+.|+|-|-+|+.||+++
T Consensus 237 --rrk~~~~-----------------------~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet 290 (423)
T KOG0313|consen 237 --RRKKQKR-----------------------EKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET 290 (423)
T ss_pred --hhhhhhh-----------------------hhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence 0000000 000000112233578999999999998 77889999999999999998
Q ss_pred CCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCc---eEeeecccccceEEEEEcCCCCe-EEEee
Q 013545 336 GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK---TCLTFRGHYEYVNCCCFSSQDQE-LYTGG 410 (441)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~---~~~~l~gh~~~v~~v~fspd~~~-l~s~s 410 (441)
+....... ......++...+...++++++. ..+++||..++. ...+|.||.++|..|.|+|-+.+ |+||+
T Consensus 291 g~~~~~~~-----~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 291 GGLKSTLT-----TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred ccceeeee-----cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe
Confidence 86432111 1122345566666677777665 578999997764 34689999999999999997655 78999
Q ss_pred cCCcEEEeCCCCCC-CCCccCC
Q 013545 411 NDRQILVWCPSRHI-SDGVDAG 431 (441)
Q Consensus 411 ~D~~i~vW~~~~~~-~~~~~~~ 431 (441)
.|+++++||..+.+ ..+.+.|
T Consensus 366 ~D~t~klWDvRS~k~plydI~~ 387 (423)
T KOG0313|consen 366 YDNTVKLWDVRSTKAPLYDIAG 387 (423)
T ss_pred cCCeEEEEEeccCCCcceeecc
Confidence 99999999998777 5555544
No 81
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=3.8e-25 Score=213.99 Aligned_cols=351 Identities=20% Similarity=0.344 Sum_probs=238.1
Q ss_pred ceeEEEccCCC-CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 45 SINSLQVDLTE-ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 45 ~V~~l~~s~~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
.|++|.= |+. -+-++-|+.+|.++|||+.+++. ++ +..++...|+++..+| -=+.+|.|-
T Consensus 161 ~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~------------v~-----~f~~~~s~IT~ieqsP-aLDVVaiG~ 221 (910)
T KOG1539|consen 161 FITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKV------------VY-----TFQEFFSRITAIEQSP-ALDVVAIGL 221 (910)
T ss_pred ceeeEec-chhheeeEEEeecCCcEEEEEeccCcE------------EE-----EecccccceeEeccCC-cceEEEEec
Confidence 3777753 431 12378999999999999987753 11 2346778899888877 357999999
Q ss_pred CCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-CCCCCeEEEEEecC
Q 013545 124 YDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTS 201 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~ 201 (441)
.+|+|.+++++.++.+++|+.+ |.+..++|..++ ..++|+|...|.+.+|||+..+.+..+. .|.+.|..+.|.|.
T Consensus 222 ~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG--~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ 299 (910)
T KOG1539|consen 222 ENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDG--NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG 299 (910)
T ss_pred cCceEEEEEcccCcEEEEEEccccceeEEEeccCC--CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC
Confidence 9999999999999999999996 999999988764 5689999999999999999998887766 79899999999998
Q ss_pred CCcEEEEeecCCcEEEEEcCC--C---------------ceeeEeccC--------Ccc---------------ccC---
Q 013545 202 SEWILVTGGCDGAIRFWDIRR--A---------------GCFRVLDQS--------QSQ---------------LGR--- 238 (441)
Q Consensus 202 ~~~~l~s~s~Dg~I~iWD~~~--~---------------~~~~~~~~~--------~~~---------------~~~--- 238 (441)
.+ +++|.+.|+++++|=..+ + .|++.+... +.+ .+.
T Consensus 300 ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 300 EP-VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred Cc-eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 66 789999999999984332 1 122222110 000 000
Q ss_pred --C--------------CCcccccccc---c--------Ccc---------------CC-cCCCCCCcccCCCCCccccC
Q 013545 239 --R--------------PPLLKRKSLS---A--------GQN---------------SS-VKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 239 --~--------------~~~~~~~~~~---~--------~~~---------------~~-~~~~~~~~~~~~~~~~~~~~ 275 (441)
+ ++........ . ..+ .+ ..+....+.......++.++
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 0 0000000000 0 000 00 00000000111222344455
Q ss_pred cccccCC----CCccc-----ccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE
Q 013545 276 VGRIPAK----GSVRQ-----RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV 346 (441)
Q Consensus 276 ~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~ 346 (441)
.|++... +.++. .++.+.+ ....+|.++|++|+...-++.++|++.+|-+++||..+... ....
T Consensus 459 CGNF~~IG~S~G~Id~fNmQSGi~r~sf---~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l----~~~l 531 (910)
T KOG1539|consen 459 CGNFVFIGYSKGTIDRFNMQSGIHRKSF---GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL----KKSL 531 (910)
T ss_pred cCceEEEeccCCeEEEEEcccCeeeccc---ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce----eeee
Confidence 5554322 11111 1111111 12357999999999999999999999999999999986531 2222
Q ss_pred EeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 347 RLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
++.. .+...........++.++. ..++++|+.+.+.+..|.||.+.|++++|||||+||++++.|++||+||++++.+
T Consensus 532 ~l~~-~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 532 RLGS-SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred ccCC-CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce
Confidence 3222 2223334445555555555 5899999999999999999999999999999999999999999999999998874
No 82
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.3e-26 Score=191.46 Aligned_cols=259 Identities=20% Similarity=0.354 Sum_probs=196.0
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEE-eeCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW-YPVD 115 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-~~~~ 115 (441)
++.+.|...|-.+.++.. ++.|||+|.|++|||+.+...... .+ ...+.||.++|.-++| +|.-
T Consensus 5 ~idt~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s-----------~l---l~~L~Gh~GPVwqv~wahPk~ 69 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQS-----------KL---LAELTGHSGPVWKVAWAHPKF 69 (299)
T ss_pred ehhhhhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCc-----------ee---eeEecCCCCCeeEEeeccccc
Confidence 566799999998887643 778999999999999998654210 01 1235699999999999 5556
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-c--eeeeecCC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-A--ISQTLSGH 189 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~--~~~~l~~h 189 (441)
|.+||||++|+.|.||.-.+++-..... +.+.+.++++.|... ..+||.+++||.|.|.+.++. . ..+....|
T Consensus 70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey-gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY-GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeeccccccc-ceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 8999999999999999988775322222 456789999999765 468899999999999998764 2 23456689
Q ss_pred CCCeEEEEEecC---C----------CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545 190 RDGIMTVEWSTS---S----------EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256 (441)
Q Consensus 190 ~~~v~~v~fsp~---~----------~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (441)
.-.|.++.|.|. | .+.|+||+.|+.|+||+...+. .
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----w--------------------------- 197 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----W--------------------------- 197 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc----h---------------------------
Confidence 999999999987 3 1248999999999999976431 0
Q ss_pred CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC----CEEEEeecCCcEEEee
Q 013545 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG----MYLLSAGSDSRIRLWD 332 (441)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg----~~l~sgs~D~~i~~wd 332 (441)
.....+.+|.+.|+.+++.|.- .+|||+|.||+|.||-
T Consensus 198 --------------------------------------~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 198 --------------------------------------KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred --------------------------------------hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 0111246799999999999974 4799999999999997
Q ss_pred CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC
Q 013545 333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412 (441)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D 412 (441)
....... |+.+++++ -...++.+.||+.|..|+.++.|
T Consensus 240 ~~~e~e~---------------------------------------wk~tll~~---f~~~~w~vSWS~sGn~LaVs~Gd 277 (299)
T KOG1332|consen 240 KDEEYEP---------------------------------------WKKTLLEE---FPDVVWRVSWSLSGNILAVSGGD 277 (299)
T ss_pred ecCccCc---------------------------------------cccccccc---CCcceEEEEEeccccEEEEecCC
Confidence 6521100 11222333 34669999999999999999999
Q ss_pred CcEEEeCCCC
Q 013545 413 RQILVWCPSR 422 (441)
Q Consensus 413 ~~i~vW~~~~ 422 (441)
+.|.+|..+.
T Consensus 278 Nkvtlwke~~ 287 (299)
T KOG1332|consen 278 NKVTLWKENV 287 (299)
T ss_pred cEEEEEEeCC
Confidence 9999997653
No 83
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=7.5e-25 Score=215.94 Aligned_cols=230 Identities=17% Similarity=0.236 Sum_probs=166.6
Q ss_pred EeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe---
Q 013545 61 SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR--- 137 (441)
Q Consensus 61 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~--- 137 (441)
+|+.++.|++|+..+.. .+ ....+|..+|.++.|+|.++.+|||||.|++|++||+.++.
T Consensus 49 gGG~~gvI~L~~~~r~~------------~v-----~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~ 111 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKP------------PV-----IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV 111 (568)
T ss_pred CCCceeEEEeeecCCCc------------eE-----EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence 36678888888864321 11 12358999999999998667899999999999999997542
Q ss_pred -----EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeec
Q 013545 138 -----VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGC 211 (441)
Q Consensus 138 -----~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~ 211 (441)
++..+. +...+..+.|+|.. ..+|++++.|+.|++||+++++.+..+. |...|.+++|+|++. +|++++.
T Consensus 112 ~~i~~p~~~L~gH~~~V~sVaf~P~g--~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~-lLat~s~ 187 (568)
T PTZ00420 112 KEIKDPQCILKGHKKKISIIDWNPMN--YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCV 187 (568)
T ss_pred cccccceEEeecCCCcEEEEEECCCC--CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC-EEEEEec
Confidence 122222 34568889999864 3577899999999999999998777775 667899999999998 5788889
Q ss_pred CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCC
Q 013545 212 DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP 291 (441)
Q Consensus 212 Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (441)
|++|+|||++++.+...+.
T Consensus 188 D~~IrIwD~Rsg~~i~tl~------------------------------------------------------------- 206 (568)
T PTZ00420 188 GKHMHIIDPRKQEIASSFH------------------------------------------------------------- 206 (568)
T ss_pred CCEEEEEECCCCcEEEEEe-------------------------------------------------------------
Confidence 9999999999875544332
Q ss_pred CcccccccceeeccC-----eEEEEEccCCCEEEEeecCC----cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCC
Q 013545 292 GMLSSQDRATAHYGA-----VTGLKVTEDGMYLLSAGSDS----RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362 (441)
Q Consensus 292 ~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~sgs~D~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (441)
+|.+. +....|++++.+|+|++.|+ +|+|||++...... ...
T Consensus 207 ----------gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl---~~~---------------- 257 (568)
T PTZ00420 207 ----------IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL---VTM---------------- 257 (568)
T ss_pred ----------cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce---EEE----------------
Confidence 22222 33345779999999988774 79999998532111 000
Q ss_pred cEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 363 AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 363 ~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
.+..+.+.+......++|.++++|+.|++||+|++..+.
T Consensus 258 -----------------------~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 258 -----------------------SIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred -----------------------EecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 112233444444556678889999999999999987654
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.1e-25 Score=204.23 Aligned_cols=241 Identities=22% Similarity=0.357 Sum_probs=192.4
Q ss_pred cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce
Q 013545 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182 (441)
Q Consensus 104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~ 182 (441)
..|.++.|+|.+..-+|.++. -.+.|++..+..+..++ .+...+++..|..++ .+||+|...|.|++||+++...
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG---~LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDG---RLLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred CcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCC---eEEEccCCcCcEEEeccccHHH
Confidence 368889998866555655544 37999998877766543 345567888888765 4899999999999999887777
Q ss_pred eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ 262 (441)
Q Consensus 183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (441)
++.+.+|+.+|..+.|+|.+..+|++|+.|+.+++||+.+... .
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~---------------------------------- 146 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--Q---------------------------------- 146 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--E----------------------------------
Confidence 8899999999999999999988999999999999999875421 0
Q ss_pred cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceee
Q 013545 263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLV 341 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~ 341 (441)
....+|.+.|.+.+|+|.. ..++|||.||+||+||++.....
T Consensus 147 -----------------------------------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~-- 189 (487)
T KOG0310|consen 147 -----------------------------------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR-- 189 (487)
T ss_pred -----------------------------------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce--
Confidence 0135799999999999975 58999999999999999875321
Q ss_pred eeeeEEeccCcce-EEEeeCCCcEEEEeCCCceEEEEccCCc-eEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 342 NFETVRLQTSKPI-QLATTQDPAVVFVPCMTAVKAFDIWSGK-TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 342 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~wd~~~~~-~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
...+.++.|+ .+.+-|++..++++++..+|+||+.+|. ++..+.-|.+.|+|+++..++..|+|||-|+.+++++
T Consensus 190 ---v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 190 ---VVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred ---eEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEE
Confidence 2234455555 4566788899999999999999998654 4455555999999999999999999999999999999
Q ss_pred CCCCC
Q 013545 420 PSRHI 424 (441)
Q Consensus 420 ~~~~~ 424 (441)
..+.+
T Consensus 267 ~t~~K 271 (487)
T KOG0310|consen 267 TTNYK 271 (487)
T ss_pred ccceE
Confidence 66543
No 85
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=5.8e-26 Score=197.82 Aligned_cols=250 Identities=18% Similarity=0.350 Sum_probs=188.2
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec---------CCeeEEEeeccCCCCccEEEEEeCCCc
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM---------PGKVYRTAMSPLAASHMLIAAGTEDVQ 171 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~las~s~d~~ 171 (441)
|.+.-+-|..|+| |+++|+|||-||.|.+|+..+|+....++. ...+.++.|+.+. .+||+|+.||.
T Consensus 211 g~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs---EMlAsGsqDGk 286 (508)
T KOG0275|consen 211 GQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS---EMLASGSQDGK 286 (508)
T ss_pred ccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH---HHhhccCcCCc
Confidence 4444566666766 899999999999999999998887654442 4567777777653 58999999999
Q ss_pred EEEEECCCCceeeeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545 172 VRLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 172 I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
|++|.+++|.+++.|. .|+..|+|+.|+.|+.. +.|+|.|.++|+--+++++|+..
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKSGK~LKE---------------------- 343 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKSGKCLKE---------------------- 343 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcch-hhcccccceEEEeccccchhHHH----------------------
Confidence 9999999999999887 89999999999999886 57999999999999988766432
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL 330 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~ 330 (441)
+.+|.+.|+...|++||.+++++|.||+|++
T Consensus 344 -------------------------------------------------frGHsSyvn~a~ft~dG~~iisaSsDgtvkv 374 (508)
T KOG0275|consen 344 -------------------------------------------------FRGHSSYVNEATFTDDGHHIISASSDGTVKV 374 (508)
T ss_pred -------------------------------------------------hcCccccccceEEcCCCCeEEEecCCccEEE
Confidence 3578889999999999999999999999999
Q ss_pred eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeeccc---ccceEEEEEcCCCCe
Q 013545 331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGH---YEYVNCCCFSSQDQE 405 (441)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh---~~~v~~v~fspd~~~ 405 (441)
|+..+.... ..|.... ..-....+..-|....-+..|. .++.+-++ .|+.+..|..- .+..-++++||.|.|
T Consensus 375 W~~KtteC~-~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGew 451 (508)
T KOG0275|consen 375 WHGKTTECL-STFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEW 451 (508)
T ss_pred ecCcchhhh-hhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcE
Confidence 999876521 1111111 0111222333333222223333 45556555 45666666433 245677889999999
Q ss_pred EEEeecCCcEEEeCCCCCCCCCcc
Q 013545 406 LYTGGNDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 406 l~s~s~D~~i~vW~~~~~~~~~~~ 429 (441)
++..++|+.+..+...++++..++
T Consensus 452 iYcigED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 452 IYCIGEDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred EEEEccCcEEEEEEeecCceeeee
Confidence 999999999999999999887664
No 86
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.5e-24 Score=199.64 Aligned_cols=303 Identities=19% Similarity=0.257 Sum_probs=212.5
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
-+.+|+..|.+|++.|+ |-.|+|||.|-+|++||.+...... ..-+ +....-...|.++.|++ .++
T Consensus 162 ~l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~-----~~fr-------~l~P~E~h~i~sl~ys~-Tg~ 227 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASM-----RSFR-------QLQPCETHQINSLQYSV-TGD 227 (641)
T ss_pred eccCCceEEEEeeecCC-CceeeeccccceEEEEecccccccc-----hhhh-------ccCcccccccceeeecC-CCC
Confidence 35678899999999975 6679999999999999987543110 0001 11112233588888887 577
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEec----------CCe---eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-e
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKM----------PGK---VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-S 183 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~ 183 (441)
+|+..+.....+++|=...+.....+. .|+ +.+.+|+|+.. ..+.+++.|+++++||++..+. +
T Consensus 228 ~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k--~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 228 QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK--EEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc--cceEEecCCCcEEEEecCCchhhe
Confidence 887777788999999543333322221 233 45567777653 4678899999999999987653 2
Q ss_pred eee-----cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545 184 QTL-----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP 258 (441)
Q Consensus 184 ~~l-----~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (441)
+++ .+-.-.+++.+|+|++++ +|+|..||+|++||.++...-..
T Consensus 306 qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~------------------------------ 354 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPV------------------------------ 354 (641)
T ss_pred eEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccc------------------------------
Confidence 333 244567889999999996 78999999999999754210000
Q ss_pred CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeecc--CeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545 259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG--AVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
.....+|.. .|++|+||+||++|+|-|.|.++++||++.-
T Consensus 355 --------------------------------------~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 355 --------------------------------------MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred --------------------------------------eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 001135655 7999999999999999999999999999875
Q ss_pred CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-------CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe
Q 013545 337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG 409 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~ 409 (441)
+..+.....+ ........++|+|+..+++++.. +.+..||..+.+.+.++.--...|..+.|+|.=+.|..|
T Consensus 397 kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 397 KKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred ccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 5332111111 11222345789999999888643 247788888888888776667889999999987778888
Q ss_pred ecCCcEEEe-CCCCCCCC
Q 013545 410 GNDRQILVW-CPSRHISD 426 (441)
Q Consensus 410 s~D~~i~vW-~~~~~~~~ 426 (441)
+.||+++|+ |++...++
T Consensus 476 sgdG~~~vyYdp~~S~RG 493 (641)
T KOG0772|consen 476 SGDGTAHVYYDPNESIRG 493 (641)
T ss_pred cCCCceEEEECccccccc
Confidence 889999887 77755544
No 87
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=9.2e-25 Score=217.64 Aligned_cols=303 Identities=17% Similarity=0.244 Sum_probs=208.4
Q ss_pred cCCC-CceeEEEccCCCCcEEEEee--CCCcEEEEECCCCcc-cCCCCc-eeccceeEEeecccccCcccceeEEEEeeC
Q 013545 40 SPHK-GSINSLQVDLTEERYLLSGA--SDSSVAVYDVQRATD-YEGGGH-IAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 40 ~~H~-~~V~~l~~s~~~~~~l~s~s--~Dg~i~iwd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
.+|. ..|++++.+| ++..++||+ .|+.++||+.+.--. ...... +..+ +. +...|.+.|+|+.|++
T Consensus 9 v~H~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~--l~-----~m~~h~~sv~CVR~S~- 79 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKH--LC-----TMDDHDGSVNCVRFSP- 79 (942)
T ss_pred cccCCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchh--he-----eeccccCceeEEEECC-
Confidence 3565 5799999997 577899999 999999998653210 000000 0111 11 1236999999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCC-------C-----------eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545 115 DTGLFVTGSYDHYVKVWDTNC-------T-----------RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~-------~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vw 175 (441)
||.+||+||+|+.|.||+-.. + ++...+. +++.+..+.++|+ ..+|++++.|++|.+|
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~---~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD---DSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC---ccEEEEecccceEEEE
Confidence 899999999999999998652 0 1222222 4566888888885 4599999999999999
Q ss_pred ECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545 176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS 255 (441)
Q Consensus 176 dl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (441)
|..+.+.++++++|.+.|-.+.|.|-|++ |||-+.|++|++|++.+-.+...+.....+....
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky-~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~---------------- 219 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKY-FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT---------------- 219 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCe-eeeecCCceEEEEEcccceeeEeeccchhhCCCc----------------
Confidence 99999999999999999999999999995 7999999999999976544433332111100000
Q ss_pred cCCCCCCcccCCCCCccccCcccccCC-------CCcccccCCCcccccccceeeccCeEEEEEcc--------CC----
Q 013545 256 VKPRAPQKRSANGNGVRQSSVGRIPAK-------GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--------DG---- 316 (441)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--------dg---- 316 (441)
..-.....+|+|...+. .....-+..+.......+.+|..++..+.|+| +|
T Consensus 220 ----------T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~ 289 (942)
T KOG0973|consen 220 ----------TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQ 289 (942)
T ss_pred ----------ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccC
Confidence 00011233334333221 11111222333333445679999999999998 11
Q ss_pred -C----EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccc
Q 013545 317 -M----YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY 391 (441)
Q Consensus 317 -~----~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~ 391 (441)
. .+|+||.|++|-||.....++.+... .+ -.
T Consensus 290 ~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~------------------------------------------~l--f~ 325 (942)
T KOG0973|consen 290 PNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH------------------------------------------NL--FN 325 (942)
T ss_pred CCcceEEEEEecCCccEEEEecCCCCchhhhh------------------------------------------hh--hc
Confidence 1 57899999999999986655432110 01 12
Q ss_pred cceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 392 EYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 392 ~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
..|.+++|||||-.|+.||.||+|.+...+...+
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 4599999999999999999999999998865443
No 88
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.3e-24 Score=185.69 Aligned_cols=241 Identities=17% Similarity=0.238 Sum_probs=186.1
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
...|.+++++++++ +.++||||.|.+|+|||......+..+ .+.+.+.++.|.+..... -|.+|+.||.|.+|+.
T Consensus 39 ~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~s-hLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 39 FSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKS-HLLSGSDDGHIIIWRV 114 (362)
T ss_pred ccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchh-heeeecCCCcEEEEEc
Confidence 45899999999995 679999999999999999876655443 356788888888754322 5778999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
..-+++.++++|.+.|+.++.+|.++ +.+|.+.|+.+|+||+-.++...++.
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~--------------------------- 166 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLN--------------------------- 166 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeec---------------------------
Confidence 99999999999999999999999998 67899999999999987653211110
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
..+. -+.|.|+|.|.+++.++.++ |-+|.+.+.+
T Consensus 167 -------------------------------------------L~~~--at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~ 200 (362)
T KOG0294|consen 167 -------------------------------------------LKNK--ATLVSWSPQGDHFVVSGRNK-IDIYQLDNAS 200 (362)
T ss_pred -------------------------------------------cCCc--ceeeEEcCCCCEEEEEeccE-EEEEecccHh
Confidence 0111 22388999999888888775 8999887643
Q ss_pred ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEE--cCCCCeEEEeecCCc
Q 013545 338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCF--SSQDQELYTGGNDRQ 414 (441)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~f--spd~~~l~s~s~D~~ 414 (441)
. +..+.. +..+.+ +..-++..++++.. ..+++||-.+..++..|.+|+..|.++++ .|++.+|+|+|.||.
T Consensus 201 v----~~~i~~-~~r~l~-~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~ 274 (362)
T KOG0294|consen 201 V----FREIEN-PKRILC-ATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF 274 (362)
T ss_pred H----hhhhhc-ccccee-eeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence 2 111111 112222 33344555666555 68999999999999999999999999984 467889999999999
Q ss_pred EEEeCCCCC
Q 013545 415 ILVWCPSRH 423 (441)
Q Consensus 415 i~vW~~~~~ 423 (441)
|+|||++..
T Consensus 275 I~vWd~~~~ 283 (362)
T KOG0294|consen 275 IKVWDIDME 283 (362)
T ss_pred EEEEEcccc
Confidence 999999866
No 89
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=1.2e-24 Score=185.02 Aligned_cols=254 Identities=20% Similarity=0.349 Sum_probs=172.7
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+.||+++|+|++.+ .+.++|+|||.|.+++|||+++++..- .. -...+|..+.|+. +++
T Consensus 47 ty~GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv~tGk~la------------~~------k~~~~Vk~~~F~~-~gn 106 (327)
T KOG0643|consen 47 TYDGHTGAVWCCDID-WDSKHLITGSADQTAKLWDVETGKQLA------------TW------KTNSPVKRVDFSF-GGN 106 (327)
T ss_pred eecCCCceEEEEEec-CCcceeeeccccceeEEEEcCCCcEEE------------Ee------ecCCeeEEEeecc-CCc
Confidence 466999999999998 467899999999999999999886421 11 1234577777776 566
Q ss_pred EEEEEeCC-----CcEEEEECC-------CCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-ee
Q 013545 118 LFVTGSYD-----HYVKVWDTN-------CTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-IS 183 (441)
Q Consensus 118 ~l~sgs~D-----~~i~iWd~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~ 183 (441)
+++.+.++ +.|.++|++ ..++...+..+ .++....+.+.. ..|++|..||.|..||+++|+ .+
T Consensus 107 ~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~---~~ii~Ghe~G~is~~da~~g~~~v 183 (327)
T KOG0643|consen 107 LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG---ETIIAGHEDGSISIYDARTGKELV 183 (327)
T ss_pred EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC---CEEEEecCCCcEEEEEcccCceee
Confidence 66655443 679999987 34455555543 456666677654 478999999999999999984 55
Q ss_pred eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCC-CCcccccccccCccCCcCCCCCC
Q 013545 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR-PPLLKRKSLSAGQNSSVKPRAPQ 262 (441)
Q Consensus 184 ~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 262 (441)
...+.|...|+.+.|+|+.. .|+++|.|.+-++||+++..++.++....+..... .|......+.+++.
T Consensus 184 ~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqe--------- 253 (327)
T KOG0643|consen 184 DSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQE--------- 253 (327)
T ss_pred echhhhccccccccccCCcc-eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCce---------
Confidence 66678999999999999987 58999999999999999988777765433221100 00000000001110
Q ss_pred cccCCCCCccccCcccc-cCCCCcccccCCC-cccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545 263 KRSANGNGVRQSSVGRI-PAKGSVRQRLHPG-MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~ 334 (441)
....... ...+.+..++... ...+..+.++|.++|++|+|||+|+..+||+.||.||+.-+.
T Consensus 254 ----------A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 254 ----------AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ----------eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 0000000 0012222222211 112234568999999999999999999999999999997554
No 90
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=5.4e-24 Score=202.37 Aligned_cols=280 Identities=19% Similarity=0.300 Sum_probs=204.4
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeE-EEEeeC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISS-AIWYPV 114 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~~ 114 (441)
..++.||..-|..+++. + +..++++|.||++++|+-......+ ....++|.+-|.+ +++.+.
T Consensus 7 s~~l~gH~~DVr~v~~~-~-~~~i~s~sRd~t~~vw~~~~~~~l~---------------~~~~~~~~g~i~~~i~y~e~ 69 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVT-D-GVCIISGSRDGTVKVWAKKGKQYLE---------------THAFEGPKGFIANSICYAES 69 (745)
T ss_pred EEEeccCccchheeEec-C-CeEEeecCCCCceeeeeccCccccc---------------ceecccCcceeeccceeccc
Confidence 45678999999988886 3 4479999999999999854322110 1123467777766 666665
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v 193 (441)
++.++++|+.|.+|.+|.+.+..++..++.+ +.+.++....+ ..++|||.|.++++|-+ +++...+.||+..|
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~----~~~iSgSWD~TakvW~~--~~l~~~l~gH~asV 143 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGED----GTLISGSWDSTAKVWRI--GELVYSLQGHTASV 143 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCc----CceEecccccceEEecc--hhhhcccCCcchhe
Confidence 6778999999999999999988887766543 34444433322 23889999999999986 45566799999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
+++.+.|.+ .++|||.|++||+|.-. +++
T Consensus 144 WAv~~l~e~--~~vTgsaDKtIklWk~~--~~l----------------------------------------------- 172 (745)
T KOG0301|consen 144 WAVASLPEN--TYVTGSADKTIKLWKGG--TLL----------------------------------------------- 172 (745)
T ss_pred eeeeecCCC--cEEeccCcceeeeccCC--chh-----------------------------------------------
Confidence 999999987 46899999999999632 111
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
..+.+|.+.|++|++-|++ .++|++.||.|++|++.... .. ....+.+-.
T Consensus 173 ------------------------~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~-l~----~~~ghtn~v 222 (745)
T KOG0301|consen 173 ------------------------KTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEV-LL----EMHGHTNFV 222 (745)
T ss_pred ------------------------hhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCce-ee----eeeccceEE
Confidence 1245799999999999876 56799999999999995432 11 112233334
Q ss_pred eEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545 354 IQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~ 422 (441)
..+....+...+++.+ ..++|+|+.. .+...+.-..-.||++.+-++| -+++|+.||-||||..+.
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEeccCceEEEEEecc
Confidence 4444445555555544 4799999986 5666666444589999999876 577788999999998763
No 91
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.9e-24 Score=183.17 Aligned_cols=277 Identities=18% Similarity=0.299 Sum_probs=190.1
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcc-cCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATD-YEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
..+..+|..-|.++.|++. |+.+||||.|++|+|||..+... +. . -...+.|.+.|..+.|-++
T Consensus 6 ~pi~s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~-------------~-Ts~Wrah~~Si~rV~WAhP 70 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWS-------------C-TSSWRAHDGSIWRVVWAHP 70 (361)
T ss_pred cccccCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceE-------------E-eeeEEecCCcEEEEEecCc
Confidence 4566799999999999974 78899999999999999754321 11 0 1234579999999999554
Q ss_pred -CCCEEEEEeCCCcEEEEECC--C-----CeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--
Q 013545 115 -DTGLFVTGSYDHYVKVWDTN--C-----TRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-- 181 (441)
Q Consensus 115 -~~~~l~sgs~D~~i~iWd~~--~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-- 181 (441)
=|+.+|+||.|++++||.-. + .+-+..-. -.+.+.++.|.|... ...+|+++.||.+|||+....-
T Consensus 71 EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl-GLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 71 EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL-GLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc-ceEEEEeccCcEEEEEecCCcccc
Confidence 48999999999999999641 1 11111111 235688899988654 4578999999999999976542
Q ss_pred ----eeeeec-------CCCCCeEEEEEecCC--CcEEEEeecC-----CcEEEEEcCCCceeeEeccCCccccCCCCcc
Q 013545 182 ----ISQTLS-------GHRDGIMTVEWSTSS--EWILVTGGCD-----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243 (441)
Q Consensus 182 ----~~~~l~-------~h~~~v~~v~fsp~~--~~~l~s~s~D-----g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~ 243 (441)
+...++ .+.....||.|+|.. +-+||.|+.+ +.++||....+..
T Consensus 150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r------------------ 211 (361)
T KOG2445|consen 150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR------------------ 211 (361)
T ss_pred ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc------------------
Confidence 222222 356677899999752 2256666654 3778886432210
Q ss_pred cccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC----CEE
Q 013545 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG----MYL 319 (441)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg----~~l 319 (441)
.......+.+|.++|++|+|.|+- ..|
T Consensus 212 -------------------------------------------------Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 212 -------------------------------------------------KWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred -------------------------------------------------eeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 000011234688999999999973 469
Q ss_pred EEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEE
Q 013545 320 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF 399 (441)
Q Consensus 320 ~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f 399 (441)
|+++.|| |+||.+...+.... +.... .++.. .. + .-+.+..|.+|.++|+.|.|
T Consensus 243 AvA~kDg-v~I~~v~~~~s~i~--~ee~~----------~~~~~-------~~---l---~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVARSAIE--EEEVL----------APDLM-------TD---L---PVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred EEeecCc-EEEEEEeeccchhh--hhccc----------CCCCc-------cc---c---ceEEeeeccCCCCceEEEEE
Confidence 9999999 99999876432210 00000 00000 00 0 11345678899999999999
Q ss_pred cCCCCeEEEeecCCcEEEeCCC
Q 013545 400 SSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 400 spd~~~l~s~s~D~~i~vW~~~ 421 (441)
+--|..|+|.|.||+||+|...
T Consensus 297 NmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeeeeEEeecCCCceeeehhhh
Confidence 9999999999999999999765
No 92
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=6.6e-25 Score=184.89 Aligned_cols=203 Identities=21% Similarity=0.387 Sum_probs=167.8
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~ 120 (441)
.|..-|.+++|+. +.++|+||+.++-+||||++..+... ....+|+++|..+.|...| +.++
T Consensus 98 ~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App----------------~E~~ghtg~Ir~v~wc~eD-~~iL 159 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPP----------------KEISGHTGGIRTVLWCHED-KCIL 159 (334)
T ss_pred hhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCc----------------hhhcCCCCcceeEEEeccC-ceEE
Confidence 5888999999984 67899999999999999998654321 1235899999999998754 4677
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEec
Q 013545 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST 200 (441)
Q Consensus 121 sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp 200 (441)
|+++|++||+||.+++..++.+..+.++.++.+++++. +|.. ...+.|+.||.++-.+++.++ -+..|.+.+++|
T Consensus 160 SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~---ilTi-a~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P 234 (334)
T KOG0278|consen 160 SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR---ILTI-AYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP 234 (334)
T ss_pred eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC---EEEE-ecCceeEEeccccccceeecc-CccccccccccC
Confidence 77999999999999999999999999999999998753 4443 345689999999988887765 356789999999
Q ss_pred CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545 201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280 (441)
Q Consensus 201 ~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (441)
+.. ++++|+.|..++.||..++..+..+
T Consensus 235 ~k~-~fVaGged~~~~kfDy~TgeEi~~~--------------------------------------------------- 262 (334)
T KOG0278|consen 235 KKE-FFVAGGEDFKVYKFDYNTGEEIGSY--------------------------------------------------- 262 (334)
T ss_pred CCc-eEEecCcceEEEEEeccCCceeeec---------------------------------------------------
Confidence 975 7899999999999998876321110
Q ss_pred CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
.++|.++|.+|.|+|||...++||.||+||||....++
T Consensus 263 -------------------nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 263 -------------------NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred -------------------ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 14789999999999999999999999999999877654
No 93
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=195.13 Aligned_cols=244 Identities=18% Similarity=0.271 Sum_probs=184.9
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
...+.|-.+.|+++.|.+ +++++++++.|+.+++||+..... ..++.||++.|+++.+.-.
T Consensus 212 ~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~-----------------~~TLsGHtdkVt~ak~~~~- 272 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRL-----------------RHTLSGHTDKVTAAKFKLS- 272 (459)
T ss_pred hhhhhccCCCcceeeecC-CCceEEeecCCCceeeeeccchhh-----------------hhhhcccccceeeehhhcc-
Confidence 445667778899999986 578999999999999999975532 2345689999999988753
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~ 195 (441)
...+++|+.|.+||+||+....+..+.-....+..+.... ..++||..|++|+.||..++.+....+.|. .|++
T Consensus 273 ~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~-----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtS 346 (459)
T KOG0288|consen 273 HSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI-----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTS 346 (459)
T ss_pred ccceeeccccchhhhhhhhhhheeccccccccccceEecc-----eeeeecccccceEEEeccCCceeeEeecCc-ceee
Confidence 3459999999999999999888877665555555555542 368899999999999999999988888776 8999
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
+..++++.. +.+++.|.++++.|+++.....++...
T Consensus 347 l~ls~~g~~-lLsssRDdtl~viDlRt~eI~~~~sA~------------------------------------------- 382 (459)
T KOG0288|consen 347 LDLSMDGLE-LLSSSRDDTLKVIDLRTKEIRQTFSAE------------------------------------------- 382 (459)
T ss_pred EeeccCCeE-EeeecCCCceeeeecccccEEEEeecc-------------------------------------------
Confidence 999999875 567799999999999975433222110
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC--cc
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS--KP 353 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~--~~ 353 (441)
....+| ..+.+.|||++.|+++||.||.|+||++.+++.... ...... .+
T Consensus 383 ----------------------g~k~as--DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~----l~~s~s~~aI 434 (459)
T KOG0288|consen 383 ----------------------GFKCAS--DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV----LSLSTSNAAI 434 (459)
T ss_pred ----------------------cccccc--ccceeEECCCCceeeeccCCCcEEEEEccCceEEEE----eccCCCCcce
Confidence 000122 267889999999999999999999999999874321 111122 35
Q ss_pred eEEEeeCCCcEEEEeCC-CceEEE
Q 013545 354 IQLATTQDPAVVFVPCM-TAVKAF 376 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~~-~~~~~w 376 (441)
..+++.+.|..++++.. ..+.+|
T Consensus 435 ~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 435 TSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEEEEcCCCchhhcccCCcceEec
Confidence 67788888887766544 456666
No 94
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=2.9e-23 Score=183.78 Aligned_cols=256 Identities=18% Similarity=0.259 Sum_probs=192.9
Q ss_pred cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (441)
Q Consensus 98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwd 176 (441)
++..|+..|.++..+| +.++++|||.|..-.+|++.++..+..+.. ...+.++.|+.++ .+||+|..+|.|+||.
T Consensus 59 tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg---tlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG---TLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc---eEEEecCCCccEEEEE
Confidence 4568999999999998 788999999999999999999997665553 4568888888754 6999999999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256 (441)
Q Consensus 177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (441)
..++.....+.+--+.+.-+.|+|-.. +|+.|+.||.+-+|.+.+++...+
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv---------------------------- 185 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKV---------------------------- 185 (399)
T ss_pred cccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeE----------------------------
Confidence 999998888877778899999999876 788999999999999876422111
Q ss_pred CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
+.+|..++++=.|.|||+.++++..|++|++||+.++
T Consensus 186 -------------------------------------------~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 186 -------------------------------------------MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred -------------------------------------------ecCCCCCcccccccCCCceEEEEecCceEEEEecCCC
Confidence 2467788888899999999999999999999999988
Q ss_pred Cceeeee-------eeEEe----------ccCcceEEEeeCCCcEEE-------------------------------Ee
Q 013545 337 RNTLVNF-------ETVRL----------QTSKPIQLATTQDPAVVF-------------------------------VP 368 (441)
Q Consensus 337 ~~~~~~~-------~~~~~----------~~~~~~~~~~~~~~~~~~-------------------------------~~ 368 (441)
++....- +.+.+ ....+..+.-...++.+. .+
T Consensus 223 ~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A 302 (399)
T KOG0296|consen 223 QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAA 302 (399)
T ss_pred ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhh
Confidence 6432111 00000 000000000000011110 11
Q ss_pred C---CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccCC
Q 013545 369 C---MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAG 431 (441)
Q Consensus 369 ~---~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~ 431 (441)
+ .+++-+||+....+.+.+. |..+|..+.|-+ ..+|+|+..||.|++||..++.+...--|
T Consensus 303 ~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 303 CGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred cccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 1 1468889987766655544 888999999999 78999999999999999999987765544
No 95
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.6e-24 Score=197.08 Aligned_cols=228 Identities=23% Similarity=0.408 Sum_probs=175.8
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+.||..+-++|+|++...-+|+||+.|++|++||+....... . .........+|+..|..+.|++.+.+
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~---~-------~~~p~~~~~~h~~~VeDV~~h~~h~~ 241 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED---K-------VVDPKTIFSGHEDVVEDVAWHPLHED 241 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC---c-------cccceEEeecCCcceehhhccccchh
Confidence 5779999999999998776789999999999999996432210 0 00112234689999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCC--eEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCe
Q 013545 118 LFVTGSYDHYVKVWDTNCT--RVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGI 193 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v 193 (441)
+|+++++|+.+.|||++++ ++.... .+.+.+.++.|.|.. ..+||+|+.|++|.+||+++- +++.++.+|...|
T Consensus 242 lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~--~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev 319 (422)
T KOG0264|consen 242 LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN--EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV 319 (422)
T ss_pred hheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC--CceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence 9999999999999999953 322222 246789999999974 679999999999999999875 4678999999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
..|.|+|..+.+|||++.|+.+.+||+..-...+..+. .
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed-----a------------------------------------ 358 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED-----A------------------------------------ 358 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhh-----h------------------------------------
Confidence 99999999999999999999999999864221100000 0
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCC
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~ 334 (441)
..+.....-...||...|....|+|+.. .|+|.+.|+.+.||.+.
T Consensus 359 ----------------~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 359 ----------------EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ----------------ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0000000112458999999999999976 57788999999999876
No 96
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.2e-22 Score=175.85 Aligned_cols=286 Identities=15% Similarity=0.220 Sum_probs=208.8
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
++-.+..+.|.+|+|||....+++.+|.|++||+|+++..-.+. .+....|.++|.+++|+. ||
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~---------------~ka~~~~~~PvL~v~Wsd-dg 84 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV---------------PKAQQSHDGPVLDVCWSD-DG 84 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCccc---------------chhhhccCCCeEEEEEcc-CC
Confidence 44567789999999999666678899999999999997531111 122346889999999987 78
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v 196 (441)
..+++|+-|+.+++||+.+++....--+.+++..+.+.+... -.+|++||.|.+|+.||++...++.++. -++.|.++
T Consensus 85 skVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred ceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 999999999999999999998776666778888888766433 4589999999999999999988887764 35666666
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
..-. + +++.+..++.|.+|+++.+-.. + ++
T Consensus 163 Dv~~--p-m~vVata~r~i~vynL~n~~te--~--------k~------------------------------------- 192 (347)
T KOG0647|consen 163 DVLY--P-MAVVATAERHIAVYNLENPPTE--F--------KR------------------------------------- 192 (347)
T ss_pred hccC--c-eeEEEecCCcEEEEEcCCCcch--h--------hh-------------------------------------
Confidence 6543 2 5677788999999999753100 0 00
Q ss_pred ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce-eeeeeeEEec---cC-
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT-LVNFETVRLQ---TS- 351 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~-~~~~~~~~~~---~~- 351 (441)
... .-.--+++|+..+|....+-|+-.|++-+..+..+.+. ...|...+.. .+
T Consensus 193 --------~~S--------------pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 193 --------IES--------------PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred --------hcC--------------cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 000 00012788999999888899999999999998875321 1112221110 01
Q ss_pred --cceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe-ecC
Q 013545 352 --KPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG-GND 412 (441)
Q Consensus 352 --~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~-s~D 412 (441)
....+++.|--..++++ ++++...||-.....+++...|..+|+|++|+.+|.++|-+ |-|
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 12346777765566655 45788999998888888999999999999999999998854 444
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=3.4e-22 Score=187.01 Aligned_cols=273 Identities=16% Similarity=0.111 Sum_probs=187.8
Q ss_pred cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE-EEEeCCCcEEEEECCC
Q 013545 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHYVKVWDTNC 135 (441)
Q Consensus 57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l-~sgs~D~~i~iWd~~~ 135 (441)
+.++|++.|+.|++||+.+++.. ... .+|. .+..+.+++ ++..+ ++++.|+.|++||+.+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~------------~~~-----~~~~-~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVT------------RTF-----PVGQ-RPRGITLSK-DGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceE------------EEE-----ECCC-CCCceEECC-CCCEEEEEECCCCeEEEEECCC
Confidence 57899999999999998765421 011 1222 245677776 66655 6778899999999999
Q ss_pred CeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC-c
Q 013545 136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG-A 214 (441)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg-~ 214 (441)
++.+..+........+.+++++ ..+++++..++.|++||+++++.+..+.. ...+.+++|+|+++. +++++.++ .
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~g--~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~-l~~~~~~~~~ 138 (300)
T TIGR03866 63 GEVIGTLPSGPDPELFALHPNG--KILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKI-VVNTSETTNM 138 (300)
T ss_pred CcEEEeccCCCCccEEEECCCC--CEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCE-EEEEecCCCe
Confidence 8887766554445556666653 34555666789999999999887776653 234688999999985 56666554 5
Q ss_pred EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcc
Q 013545 215 IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGML 294 (441)
Q Consensus 215 I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (441)
+.+||.+++.+...+.
T Consensus 139 ~~~~d~~~~~~~~~~~---------------------------------------------------------------- 154 (300)
T TIGR03866 139 AHFIDTKTYEIVDNVL---------------------------------------------------------------- 154 (300)
T ss_pred EEEEeCCCCeEEEEEE----------------------------------------------------------------
Confidence 7778876543321110
Q ss_pred cccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceee-eeeeEEe--ccCcceEEEeeCCCcEEEEeC-
Q 013545 295 SSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLV-NFETVRL--QTSKPIQLATTQDPAVVFVPC- 369 (441)
Q Consensus 295 ~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~- 369 (441)
....+..++|+|++++|+ ++..+++|++||+.+++.... .+..... ....+..+++++++..++++.
T Consensus 155 --------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 155 --------VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred --------cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence 001235689999999885 455699999999998653111 0100000 011234577889998866643
Q ss_pred -CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe-ecCCcEEEeCCCCCCC
Q 013545 370 -MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG-GNDRQILVWCPSRHIS 425 (441)
Q Consensus 370 -~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~-s~D~~i~vW~~~~~~~ 425 (441)
...+.+||+.+++....+. +...+.+++|+|+|++|+++ +.+++|++||+.+...
T Consensus 227 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 227 PANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 3579999999888776553 44579999999999999876 5689999999998874
No 98
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2e-23 Score=180.55 Aligned_cols=243 Identities=24% Similarity=0.330 Sum_probs=175.3
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC-CeEE--EEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-TRVV--MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
...+.|.+++|+|....+++.+|+|++||+|+++. +..+ ....+++++.+++++.++ ..+++|+.|+.+++|||
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg---skVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG---SKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC---ceEEeeccCCceEEEEc
Confidence 45677999999997777888999999999999976 3433 234567899999999865 46888999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCC-cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545 178 ASGAISQTLSGHRDGIMTVEWSTSSE-WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~v~~v~fsp~~~-~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (441)
.+++ ...+..|.++|.++.|.+... .+|+|||+|++||+||+|....+.+++-
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L------------------------- 155 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL------------------------- 155 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-------------------------
Confidence 9995 456778999999999987654 2589999999999999996543332210
Q ss_pred CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
...+.+++. -..+++.+.+++.|.+|+++.+
T Consensus 156 -----------------------------------------------PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 156 -----------------------------------------------PERVYAADV--LYPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred -----------------------------------------------cceeeehhc--cCceeEEEecCCcEEEEEcCCC
Confidence 122343333 2346778889999999999875
Q ss_pred CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCC--ceEeeeccccc---------ceEEEEEcCCCC
Q 013545 337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSG--KTCLTFRGHYE---------YVNCCCFSSQDQ 404 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~--~~~~~l~gh~~---------~v~~v~fspd~~ 404 (441)
...+...+. .+. -...++++..|....+.++. +.+-+..+..+ +.--+|+.|.. .|++++|+|.-.
T Consensus 187 ~te~k~~~S-pLk-~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg 264 (347)
T KOG0647|consen 187 PTEFKRIES-PLK-WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG 264 (347)
T ss_pred cchhhhhcC-ccc-ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc
Confidence 432211111 000 11234555555554455444 56777777765 33346666652 589999999999
Q ss_pred eEEEeecCCcEEEeCCCCC
Q 013545 405 ELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 405 ~l~s~s~D~~i~vW~~~~~ 423 (441)
.|+|+|.||+...||-+..
T Consensus 265 tlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 265 TLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred eEEEecCCceEEEecchhh
Confidence 9999999999999998743
No 99
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.1e-23 Score=190.17 Aligned_cols=283 Identities=20% Similarity=0.312 Sum_probs=198.3
Q ss_pred EEEEeeCCCc-EEEEECCCCcccCCCCceeccceeEEeecc-cccCcccceeEEEEeeCCCCEEEEEeC-CCcEEEEECC
Q 013545 58 YLLSGASDSS-VAVYDVQRATDYEGGGHIAKHRSVFVVDKQ-HEHGHKYAISSAIWYPVDTGLFVTGSY-DHYVKVWDTN 134 (441)
Q Consensus 58 ~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~~~~~~~~~~~l~sgs~-D~~i~iWd~~ 134 (441)
.+.++|.|.. +.+||+.++...- ...+. ...+|.-.. . ...+++++.. -..|.+|.+.
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~------------~ykg~~~a~~~sl~~----l---~~~yllsaq~~rp~l~vw~i~ 69 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLL------------QYKGSYLAQAASLTA----L---NNEYLLSAQLKRPLLHVWEIL 69 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeE------------EecCcccccchhhhh----h---chhheeeecccCccccccccC
Confidence 4556666665 9999999886410 00000 111222111 1 2346666544 4578999986
Q ss_pred CCeEEE-EEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC
Q 013545 135 CTRVVM-NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG 213 (441)
Q Consensus 135 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg 213 (441)
...... .+-++|++.+++.+|.+ .+|+.|+..+.|++|.+.+|+++..+.+|-..|+|+.|+.|+.. |+|||.||
T Consensus 70 k~~~~~q~~v~Pg~v~al~s~n~G---~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~-iiTgskDg 145 (476)
T KOG0646|consen 70 KKDQVVQYIVLPGPVHALASSNLG---YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH-IITGSKDG 145 (476)
T ss_pred chhhhhhhcccccceeeeecCCCc---eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE-EEecCCCc
Confidence 554433 45578999988888764 47777778999999999999999999999999999999999985 78999999
Q ss_pred cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCc
Q 013545 214 AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGM 293 (441)
Q Consensus 214 ~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (441)
.|.+|++-.- +..... ..
T Consensus 146 ~V~vW~l~~l-----v~a~~~---------------------------------------------------------~~ 163 (476)
T KOG0646|consen 146 AVLVWLLTDL-----VSADND---------------------------------------------------------HS 163 (476)
T ss_pred cEEEEEEEee-----cccccC---------------------------------------------------------CC
Confidence 9999997421 000000 00
Q ss_pred ccccccceeeccCeEEEEEccCC--CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-
Q 013545 294 LSSQDRATAHYGAVTGLKVTEDG--MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM- 370 (441)
Q Consensus 294 ~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 370 (441)
......+..|.-+|+++...+.| .+|+|+|.|.++|+||+..+.... ++. -+..+..++..|..+.+++++.
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl----ti~-fp~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL----TIT-FPSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE----EEe-cCCcceeEEEcccccEEEecCCc
Confidence 01112245788899999888764 589999999999999999886322 111 1334556777777777877765
Q ss_pred CceEEEEccC----------------CceEeeeccccc--ceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccC
Q 013545 371 TAVKAFDIWS----------------GKTCLTFRGHYE--YVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDA 430 (441)
Q Consensus 371 ~~~~~wd~~~----------------~~~~~~l~gh~~--~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~ 430 (441)
+.+-+.++.. +.....+.||.+ .|+|++.|.||..|+||++||.++|||+.+....++++
T Consensus 239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 3344444322 234557899998 99999999999999999999999999998776555444
No 100
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=3.2e-23 Score=188.46 Aligned_cols=301 Identities=18% Similarity=0.251 Sum_probs=210.3
Q ss_pred eecCCCCceeEEEccCCCC-cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 38 IVSPHKGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
+...|.+.|++++|+|... +++|.|+.-|+|-+||+.+..... ..++. +..|..+|.++.|+|.+.
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~--------d~v~~-----f~~hs~~Vs~l~F~P~n~ 247 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK--------DGVYL-----FTPHSGPVSGLKFSPANT 247 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc--------CceEE-----eccCCccccceEecCCCh
Confidence 3456889999999999877 689999999999999995322110 11222 347999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecC--C-eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-eeeecCCCCC
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP--G-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDG 192 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~~~l~~h~~~ 192 (441)
.++++.|+||+||+=|++.......+... . ....+.+.. .+..+++.... |...+||++++.. ...+.-|...
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~--e~~~vl~~~~~-G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA--ESRSVLFGDNV-GNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC--CCccEEEeecc-cceEEEEeecCCccchhhhhhhcc
Confidence 99999999999999999876543333331 1 122222332 22334444443 4899999998765 5566778999
Q ss_pred eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (441)
|.+++++|..+++|+|+|.|++.+|||+|.-.. +..|
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~------------K~sp------------------------------- 361 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRG------------KASP------------------------------- 361 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcC------------CCCc-------------------------------
Confidence 999999999999999999999999999985210 0000
Q ss_pred ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC----CCCceeeeeeeEE-
Q 013545 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE----SGRNTLVNFETVR- 347 (441)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~----~~~~~~~~~~~~~- 347 (441)
+. -...|.-.|.+..|||.+-.|+|.+.|.+|||||.. .-.+.....+...
T Consensus 362 ------------~l------------st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t 417 (498)
T KOG4328|consen 362 ------------FL------------STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT 417 (498)
T ss_pred ------------ce------------ecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence 00 013577789999999999889999999999999984 1111111111111
Q ss_pred eccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccccc-ceEE-EEEcCCCCeEEEe-ecCCcEEEeCCC
Q 013545 348 LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYE-YVNC-CCFSSQDQELYTG-GNDRQILVWCPS 421 (441)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~-~v~~-v~fspd~~~l~s~-s~D~~i~vW~~~ 421 (441)
...-.+....+.|+..+++++.. ..+-++|-..++.+..|.+-.. .|.+ ..|+|-+-.+++| +.-|.|.||.-.
T Consensus 418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 11223456778888777777755 5799999988888877655543 3433 5799987745554 556788888643
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.8e-24 Score=201.96 Aligned_cols=207 Identities=22% Similarity=0.396 Sum_probs=169.9
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
+..|...|+.+.+. .+++.|+|+|.|-+|++|+...+... -..+...|++-|.|+++-.++..+
T Consensus 69 me~HsDWVNDiiL~-~~~~tlIS~SsDtTVK~W~~~~~~~~---------------c~stir~H~DYVkcla~~ak~~~l 132 (735)
T KOG0308|consen 69 MEHHSDWVNDIILC-GNGKTLISASSDTTVKVWNAHKDNTF---------------CMSTIRTHKDYVKCLAYIAKNNEL 132 (735)
T ss_pred hhhhHhHHhhHHhh-cCCCceEEecCCceEEEeecccCcch---------------hHhhhhcccchheeeeecccCcee
Confidence 34588899999887 56778999999999999998654210 123455799999999995568889
Q ss_pred EEEEeCCCcEEEEECCCCe--EEEEEe------cC----CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee
Q 013545 119 FVTGSYDHYVKVWDTNCTR--VVMNFK------MP----GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL 186 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~--~~~~~~------~~----~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l 186 (441)
+||||.|+.|.+||++++. .+..+. .. ..+++++..+. ..++++|+..+.+++||..+++.++.+
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t---~t~ivsGgtek~lr~wDprt~~kimkL 209 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT---GTIIVSGGTEKDLRLWDPRTCKKIMKL 209 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc---ceEEEecCcccceEEeccccccceeee
Confidence 9999999999999999773 333322 11 23666666653 368999999999999999999999999
Q ss_pred cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545 187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA 266 (441)
Q Consensus 187 ~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (441)
+||+..|.++..+++|.. ++|+|.||+||+||++.+.|+.++
T Consensus 210 rGHTdNVr~ll~~dDGt~-~ls~sSDgtIrlWdLgqQrCl~T~------------------------------------- 251 (735)
T KOG0308|consen 210 RGHTDNVRVLLVNDDGTR-LLSASSDGTIRLWDLGQQRCLATY------------------------------------- 251 (735)
T ss_pred eccccceEEEEEcCCCCe-EeecCCCceEEeeeccccceeeeE-------------------------------------
Confidence 999999999999999985 689999999999999987776543
Q ss_pred CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545 267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
..|...|.++..+|+-.++.+|+.|+.|..=|+.+.
T Consensus 252 ----------------------------------~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 252 ----------------------------------IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ----------------------------------EeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 356677999999999999999999999999998874
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.3e-23 Score=199.87 Aligned_cols=236 Identities=19% Similarity=0.330 Sum_probs=188.1
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CeeEE-EeeccCCCCccEEEEEeCCCcEEE
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYR-TAMSPLAASHMLIAAGTEDVQVRL 174 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~las~s~d~~I~v 174 (441)
..||+..|..+++.+ +..++++|+|+++++|+-...+.+...... +-+.. +++.+ ...-.+.+|+.|..|.+
T Consensus 10 l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVGGMDTTIIV 85 (745)
T ss_pred eccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc--ccCcceEeecccceEEE
Confidence 358999998887753 557999999999999998776665433332 22222 33333 12335889999999999
Q ss_pred EECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545 175 CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS 254 (441)
Q Consensus 175 wdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (441)
|.+.+..++.+|.||...|.|++...++. ++|||+|.++++|-+... ..
T Consensus 86 ~~~~~~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l--~~--------------------------- 134 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGEL--VY--------------------------- 134 (745)
T ss_pred EecCCCCchhhhhccccceeeeecCCcCc--eEecccccceEEecchhh--hc---------------------------
Confidence 99999999999999999999999776653 789999999999965321 00
Q ss_pred CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545 255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~ 334 (441)
...+|..+|.++++-|.+ .++|||+|++||+|.-.
T Consensus 135 --------------------------------------------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~ 169 (745)
T KOG0301|consen 135 --------------------------------------------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG 169 (745)
T ss_pred --------------------------------------------ccCCcchheeeeeecCCC-cEEeccCcceeeeccCC
Confidence 135799999999999998 88899999999999865
Q ss_pred CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc
Q 013545 335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ 414 (441)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~ 414 (441)
+.- .++..+.+....+++-++..++.++..+.++.|++ +|+.+.++.||+..|.++...++++.++|+|+|++
T Consensus 170 ~~l------~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt 242 (745)
T KOG0301|consen 170 TLL------KTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT 242 (745)
T ss_pred chh------hhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCce
Confidence 432 23333555666678888878877777789999999 89999999999999999998888999999999999
Q ss_pred EEEeCCC
Q 013545 415 ILVWCPS 421 (441)
Q Consensus 415 i~vW~~~ 421 (441)
+|||+..
T Consensus 243 lriW~~~ 249 (745)
T KOG0301|consen 243 LRIWKKD 249 (745)
T ss_pred EEEeecC
Confidence 9999876
No 103
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=6e-23 Score=188.47 Aligned_cols=282 Identities=18% Similarity=0.297 Sum_probs=207.4
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~ 120 (441)
.|.+.|.++.+| ...+++.||+. |.|+|||+....... .+.. ..+ .....-|.++..++ |+..|+
T Consensus 417 ~HGEvVcAvtIS-~~trhVyTgGk-gcVKVWdis~pg~k~---Pvsq-Ldc--------l~rdnyiRSckL~p-dgrtLi 481 (705)
T KOG0639|consen 417 AHGEVVCAVTIS-NPTRHVYTGGK-GCVKVWDISQPGNKS---PVSQ-LDC--------LNRDNYIRSCKLLP-DGRTLI 481 (705)
T ss_pred ccCcEEEEEEec-CCcceeEecCC-CeEEEeeccCCCCCC---cccc-ccc--------cCcccceeeeEecC-CCceEE
Confidence 687888888898 45778999876 999999996442110 0000 001 01223466777777 788999
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecCC---eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545 121 TGSYDHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (441)
Q Consensus 121 sgs~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~ 197 (441)
+||.-.++-|||+....+.....+.. ..+.++++++. .++.++..||.|.||||.+...++.|+||++.+.||.
T Consensus 482 vGGeastlsiWDLAapTprikaeltssapaCyALa~spDa---kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA---KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 558 (705)
T ss_pred eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc---ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence 99999999999998777644433332 24567777764 4777888999999999999999999999999999999
Q ss_pred EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 277 (441)
Q Consensus 198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
.+++|.. |.||+-|++||-||+|.+..+..
T Consensus 559 is~dGtk-lWTGGlDntvRcWDlregrqlqq------------------------------------------------- 588 (705)
T KOG0639|consen 559 ISKDGTK-LWTGGLDNTVRCWDLREGRQLQQ------------------------------------------------- 588 (705)
T ss_pred ecCCCce-eecCCCccceeehhhhhhhhhhh-------------------------------------------------
Confidence 9999975 78999999999999987532110
Q ss_pred cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545 278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA 357 (441)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (441)
....+-|.+|..+|++..|+.|-..+.+.+-.....+. +.+..+.+....+-
T Consensus 589 -----------------------hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-----yqlhlheScVLSlK 640 (705)
T KOG0639|consen 589 -----------------------HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-----YQLHLHESCVLSLK 640 (705)
T ss_pred -----------------------hhhhhhheecccCCCccceeeecccCcEEEEecCCccc-----eeecccccEEEEEE
Confidence 00123478899999999999999999998877654332 23344556677788
Q ss_pred eeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 358 TTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 358 ~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
|.+-|...++.+. .-+..|..--|..+-... ....|.||.+|.|++++||||-|+...|+.
T Consensus 641 Fa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 641 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred ecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 8888888777655 345667654443333222 346799999999999999999998877764
No 104
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.8e-22 Score=191.99 Aligned_cols=321 Identities=18% Similarity=0.213 Sum_probs=208.6
Q ss_pred eecCCCCceeEEEccCCCCc---EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 38 IVSPHKGSINSLQVDLTEER---YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
.+.||..+|+|+.+-|+ .+ +++||+.|+.|.+|.++.. . .....+..+|...+.|+...+
T Consensus 49 ~l~GH~a~VnC~~~l~~-s~~~a~~vsG~sD~~v~lW~l~~~-~--------------~~~i~~~~g~~~~~~cv~a~~- 111 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPT-SEIVAEMVSGDSDGRVILWKLRDE-Y--------------LIKIYTIQGHCKECVCVVARS- 111 (764)
T ss_pred eccCCccceEEEEEccc-ccccceEEEccCCCcEEEEEEeeh-h--------------eEEEEeecCcceeEEEEEeee-
Confidence 35699999999999764 44 7999999999999998621 1 011123446777776654432
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCe--EEEEEecC-CeeE--EEeeccCCCCccEEEEEeCCCcEEEEECCCCc--eeeee
Q 013545 115 DTGLFVTG-SYDHYVKVWDTNCTR--VVMNFKMP-GKVY--RTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTL 186 (441)
Q Consensus 115 ~~~~l~sg-s~D~~i~iWd~~~~~--~~~~~~~~-~~~~--~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~~~~l 186 (441)
.+.++ +.|+++.+||.+..+ ++..+... +... ++++.+ ..+..++|.|+.+..|.++.-.+.+ ....+
T Consensus 112 ---~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el 187 (764)
T KOG1063|consen 112 ---SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NNKTFLLACGGSKFVVDLYSSSADSFARVAEL 187 (764)
T ss_pred ---eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cCCcEEEEecCcceEEEEeccCCcceeEEEEe
Confidence 23333 789999999996655 22222222 1222 333334 2455688888888899999876554 45678
Q ss_pred cCCCCCeEEEEEecCC--CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545 187 SGHRDGIMTVEWSTSS--EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR 264 (441)
Q Consensus 187 ~~h~~~v~~v~fsp~~--~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (441)
.||.+.|.+++|...+ ..+|+|+|.|.+||||.+.-.......+. . ..++ .....+ .+
T Consensus 188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~---e----------~~~t------~~~~~~-~f 247 (764)
T KOG1063|consen 188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNER---E----------DSLT------TLSNLP-VF 247 (764)
T ss_pred eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccc---c----------cccc------cccCCc-ee
Confidence 9999999999998653 46899999999999999864321110000 0 0000 000000 00
Q ss_pred cCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeee
Q 013545 265 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE 344 (441)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~ 344 (441)
. .. ..+..+ ........+|.+.|.++.|+|.+..|+|+|.|+++.+|...........
T Consensus 248 ~-~l--------------~~i~~~-----is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~-- 305 (764)
T KOG1063|consen 248 M-IL--------------EEIQYR-----ISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD-- 305 (764)
T ss_pred e-ee--------------eeEEEE-----EehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEE--
Confidence 0 00 000000 0111234699999999999999999999999999999987765332221
Q ss_pred eEEec-----cCcceEEEeeCCCcEEEEeCC-CceEEEEccC---CceEeeecccccceEEEEEcCCCCeEEEeecCCcE
Q 013545 345 TVRLQ-----TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWS---GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQI 415 (441)
Q Consensus 345 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~---~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i 415 (441)
..++. ..+=....+++++..++.-+. ++.++|.-.+ ......+.||.+.|.+|+|.|.|.+|+|+|.|.|-
T Consensus 306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTT 385 (764)
T KOG1063|consen 306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTT 385 (764)
T ss_pred EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccce
Confidence 11211 111233556677766555444 6889997221 23456789999999999999999999999999999
Q ss_pred EEeCCC
Q 013545 416 LVWCPS 421 (441)
Q Consensus 416 ~vW~~~ 421 (441)
||+-+-
T Consensus 386 RlFa~w 391 (764)
T KOG1063|consen 386 RLFARW 391 (764)
T ss_pred eeeccc
Confidence 999775
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=2.2e-22 Score=183.24 Aligned_cols=247 Identities=21% Similarity=0.271 Sum_probs=181.7
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
.+|...|.+++.++ +++|||||+.|..|.|||.++.+.. +.+.+|.+.|.+++|.. ....+
T Consensus 199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv-----------------~~~~ghr~~V~~L~fr~-gt~~l 259 (479)
T KOG0299|consen 199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHV-----------------KVFKGHRGAVSSLAFRK-GTSEL 259 (479)
T ss_pred ccccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchh-----------------hcccccccceeeeeeec-Cccce
Confidence 38999999999995 7899999999999999999876531 23468999999998865 56689
Q ss_pred EEEeCCCcEEEEECCCCeEEEE-EecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545 120 VTGSYDHYVKVWDTNCTRVVMN-FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f 198 (441)
+++|.|++|++|++.....+.+ +.++..+..+..... ..++.+|+-|.++++|++. .+....+.+|.+.+.|++|
T Consensus 260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r---eR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~ 335 (479)
T KOG0299|consen 260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR---ERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAF 335 (479)
T ss_pred eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc---cceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEE
Confidence 9999999999999976665443 334555555544432 3467777799999999993 3445578899999999999
Q ss_pred ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccc
Q 013545 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR 278 (441)
Q Consensus 199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (441)
..+.. |+|||.||.|.+|++-+-+.+.+....+..
T Consensus 336 In~~H--fvsGSdnG~IaLWs~~KKkplf~~~~AHgv------------------------------------------- 370 (479)
T KOG0299|consen 336 INDEH--FVSGSDNGSIALWSLLKKKPLFTSRLAHGV------------------------------------------- 370 (479)
T ss_pred ecccc--eeeccCCceEEEeeecccCceeEeeccccc-------------------------------------------
Confidence 98754 689999999999998765443332111100
Q ss_pred ccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEe
Q 013545 279 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT 358 (441)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (441)
.+. . ....+..+|++|+..|...++++||-+|.||+|-++.+-..+..+..+. ..+-+..+++
T Consensus 371 -----------~~~----~-~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f 433 (479)
T KOG0299|consen 371 -----------IPE----L-DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAF 433 (479)
T ss_pred -----------cCC----c-cccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEE
Confidence 000 0 0112346899999999999999999999999999998743332233322 2344567888
Q ss_pred eCCCcEEEEeCCC
Q 013545 359 TQDPAVVFVPCMT 371 (441)
Q Consensus 359 ~~~~~~~~~~~~~ 371 (441)
+.++..++++.+.
T Consensus 434 ~~sgk~ivagiGk 446 (479)
T KOG0299|consen 434 SNSGKRIVAGIGK 446 (479)
T ss_pred ccCCCEEEEeccc
Confidence 9999987777653
No 106
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.6e-22 Score=173.50 Aligned_cols=242 Identities=22% Similarity=0.324 Sum_probs=175.1
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~ 180 (441)
..+..|.++.|++ ..+.|+.++||+++++||+........+++..++.+++|.+. ..+++|+.||.|+++|++++
T Consensus 11 pP~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~----~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 11 PPEDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE----STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred CChhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC----ceEEEeccCceEEEEEecCC
Confidence 4567899999996 455677777999999999998888888889999999998873 35889999999999999998
Q ss_pred ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA 260 (441)
Q Consensus 181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (441)
+.. .+..|..+|.|+.+++... .+++||+|++|++||.|...+...+
T Consensus 86 ~~~-~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~------------------------------- 132 (323)
T KOG1036|consen 86 NED-QIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTF------------------------------- 132 (323)
T ss_pred cce-eeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccccccccc-------------------------------
Confidence 753 4556999999999998755 4789999999999999842111000
Q ss_pred CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee
Q 013545 261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 340 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~ 340 (441)
.....|.+++.+ |..|+.|+.|..+.+||+++....+
T Consensus 133 -----------------------------------------d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 133 -----------------------------------------DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred -----------------------------------------ccCceEEEEecc--CCEEEEeecCceEEEEEcccccchh
Confidence 011257777665 6789999999999999999765322
Q ss_pred eeee-eEEeccCcceEEEeeCCCcEEEEeC-CC--ceEEEEcc--CCceEeeeccccc---------ceEEEEEcCCCCe
Q 013545 341 VNFE-TVRLQTSKPIQLATTQDPAVVFVPC-MT--AVKAFDIW--SGKTCLTFRGHYE---------YVNCCCFSSQDQE 405 (441)
Q Consensus 341 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~wd~~--~~~~~~~l~gh~~---------~v~~v~fspd~~~ 405 (441)
...+ .+. -...++++.|++.-.++.+ .+ .+..+|-. ..+....|+.|.. ||++++|+|-.+.
T Consensus 170 q~reS~lk---yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 170 QRRESSLK---YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred hhccccce---eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 1000 001 1123455556544433332 23 34444443 1133345666653 7999999999999
Q ss_pred EEEeecCCcEEEeCCCCCCCC
Q 013545 406 LYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 406 l~s~s~D~~i~vW~~~~~~~~ 426 (441)
|||||.||-|.+||+...+..
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred EEecCCCceEEEccCcchhhh
Confidence 999999999999999877754
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=5.3e-22 Score=179.42 Aligned_cols=205 Identities=19% Similarity=0.340 Sum_probs=166.4
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
++.||+..|+.+.|++ +.+.++++|.|..|+||.+...... .....|..+|+.+..++ .|+
T Consensus 256 ~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~-----------------~~~~~h~~~V~~ls~h~-tge 316 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEP-----------------TSSRPHEEPVTGLSLHP-TGE 316 (506)
T ss_pred hccCcceEEEEEEecc-chhheeecCCcceEEeeccccccCc-----------------cccccccccceeeeecc-CCc
Confidence 5679999999999997 4668999999999999987543321 11236888898888877 799
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecCC---eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~ 194 (441)
||++++.|++.-+-|++++..+....... ...+.+|+|++ .+|++|..|+.+++||++++.....|.+|.++|.
T Consensus 317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg---Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk 393 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG---LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK 393 (506)
T ss_pred EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc---eEEeccCCCceEEEEEcCCccccccCCCCCCcee
Confidence 99999999999999999999887766532 25677788864 5899999999999999999999999999999999
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS 274 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (441)
+++|+.+| |.|++++.|+.|++||+|..+.+.++..
T Consensus 394 ~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l------------------------------------------- 429 (506)
T KOG0289|consen 394 AISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQL------------------------------------------- 429 (506)
T ss_pred EEEeccCc-eEEEEEecCCeEEEEEehhhcccceeec-------------------------------------------
Confidence 99999987 5689999999999999997543332210
Q ss_pred CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~ 335 (441)
...-+|.++.|.+.|++|+.++.|=+|++++-.+
T Consensus 430 ---------------------------~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 430 ---------------------------DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred ---------------------------cccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 0112588999999999999998887777776443
No 108
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1e-22 Score=195.95 Aligned_cols=291 Identities=18% Similarity=0.298 Sum_probs=206.8
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
...++|...++ -..|+.++. ..++||-+......+ .+-. .......-...+..+.|...+.++|||++
T Consensus 40 ~~~nAIs~nr~-~~qiv~AGr-s~lklyai~~~~~~~---------~~~~-~~k~kqn~~~S~~DVkW~~~~~NlIAT~s 107 (839)
T KOG0269|consen 40 AKANAISVNRD-INQIVVAGR-SLLKLYAINPNDFSE---------KCNH-RFKTKQNKFYSAADVKWGQLYSNLIATCS 107 (839)
T ss_pred cccceEeecCC-cceeEEecc-cceeeEeeCcccCCc---------ceee-ecccccceeeehhhcccccchhhhheeec
Confidence 45667777654 445666654 567788764322111 0000 00001111123445677766788999999
Q ss_pred CCCcEEEEECCC---CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEe
Q 013545 124 YDHYVKVWDTNC---TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199 (441)
Q Consensus 124 ~D~~i~iWd~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fs 199 (441)
..|.|-+||+.. .+.+..|. +.-.+..+.|++..+ .+|++|+.|+.|++||++..+...++.+....|..|.|+
T Consensus 108 ~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 108 TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecccccccccccchhhhceeec
Confidence 999999999976 33333443 344577888887654 689999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI 279 (441)
Q Consensus 200 p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (441)
|.-...|+++...|.+++||+|.....
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r~----------------------------------------------------- 212 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDRC----------------------------------------------------- 212 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchhH-----------------------------------------------------
Confidence 987778999999999999999853110
Q ss_pred cCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545 280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359 (441)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (441)
...+.+|.++|.++.|+|++.+|||||.|+.|+|||+.+.+.-. .+++.. .....++.+.
T Consensus 213 -----------------~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~--~~tInT-iapv~rVkWR 272 (839)
T KOG0269|consen 213 -----------------EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP--KHTINT-IAPVGRVKWR 272 (839)
T ss_pred -----------------HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc--eeEEee-cceeeeeeec
Confidence 01246899999999999999999999999999999998654311 111111 1234467777
Q ss_pred CCCcEEEEeC----CCceEEEEccCC-ceEeeecccccceEEEEEcC-CCCeEEEeecCCcEEEeCCC
Q 013545 360 QDPAVVFVPC----MTAVKAFDIWSG-KTCLTFRGHYEYVNCCCFSS-QDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 360 ~~~~~~~~~~----~~~~~~wd~~~~-~~~~~l~gh~~~v~~v~fsp-d~~~l~s~s~D~~i~vW~~~ 421 (441)
|+....+..| ...|++||+... -+..+|..|...++.++|-. |-..|.|++.|++|..-...
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 7765544333 358999999664 45678999999999999976 44568899999997655443
No 109
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.4e-22 Score=181.90 Aligned_cols=254 Identities=19% Similarity=0.255 Sum_probs=193.1
Q ss_pred cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeE-EEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV-VMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173 (441)
Q Consensus 98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~ 173 (441)
....|+++|+=+.|++ +|.+|||++.|.+..||++..... ..... +..+|..+.++|+. .+|++++.|..+.
T Consensus 219 il~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd---ryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD---RYLLACGFDEVLS 294 (519)
T ss_pred hHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC---CeEEecCchHhee
Confidence 3458999999988887 899999999999999998754332 12222 33456677778764 4788888888999
Q ss_pred EEECCCCceeeeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545 174 LCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ 252 (441)
Q Consensus 174 vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (441)
+||..+|.+...+. +|...+.+.+|.||+.. |++|+.|++|..||+.... ...+
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~-~~~W----------------------- 349 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNI-LGNW----------------------- 349 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcch-hhcc-----------------------
Confidence 99999999876664 56788999999999985 7999999999999986320 0000
Q ss_pred cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEee
Q 013545 253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 332 (441)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd 332 (441)
. ......|.+|+.++||+++++-+.|..|++++
T Consensus 350 ---------------------------------~--------------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~ 382 (519)
T KOG0293|consen 350 ---------------------------------E--------------GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYN 382 (519)
T ss_pred ---------------------------------c--------------ccccceeEEEEEcCCCcEEEEEecccceeeec
Confidence 0 00123488999999999999999999999999
Q ss_pred CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccc--eEEEEEcC-CCCeEEE
Q 013545 333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEY--VNCCCFSS-QDQELYT 408 (441)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~--v~~v~fsp-d~~~l~s 408 (441)
.++....- +.....+...+..+.++.++.+.- ..++.+||+...+.+..+.||+.. |-.-+|-- +..+++|
T Consensus 383 ~e~~~dr~-----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS 457 (519)
T KOG0293|consen 383 REARVDRG-----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS 457 (519)
T ss_pred hhhhhhhc-----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEe
Confidence 88643210 111233455678888888877654 478999999999999999999864 33334554 4588999
Q ss_pred eecCCcEEEeCCCCCCCCCccCCc
Q 013545 409 GGNDRQILVWCPSRHISDGVDAGP 432 (441)
Q Consensus 409 ~s~D~~i~vW~~~~~~~~~~~~~~ 432 (441)
||+|+.|+||+-.++++..++.|-
T Consensus 458 GSED~kvyIWhr~sgkll~~LsGH 481 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISGKLLAVLSGH 481 (519)
T ss_pred cCCCceEEEEEccCCceeEeecCC
Confidence 999999999999999988887774
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=191.81 Aligned_cols=251 Identities=19% Similarity=0.308 Sum_probs=180.7
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCC-cccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRA-TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
+|+..-+.|+|.| +|++|.|++.||.|++|+.... +.++. ..-|...|.+++. ...+|
T Consensus 11 aht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~t-----------------i~~~g~~v~~ia~---~s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPET-----------------IDISGELVSSIAC---YSNHF 69 (933)
T ss_pred hccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCch-----------------hhccCceeEEEee---cccce
Confidence 7998999999996 5679999999999999997655 22210 0114445655555 34599
Q ss_pred EEEeCCCcEEEEECCCCe---EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545 120 VTGSYDHYVKVWDTNCTR---VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v 196 (441)
++|+.|++|.++.+-.+. .+..+.++ ...++++.. ..++|.|+.|..|++-++.+....+.+++|.++|.+|
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~iL~Rftlp--~r~~~v~g~---g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDTILARFTLP--IRDLAVSGS---GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccceeeeeecc--ceEEEEecC---CcEEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999876554 34555544 455666653 3589999999999999999999999999999999999
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
.|+|.+. +||+.+.||.|++||+.++.+..++......
T Consensus 145 ~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~----------------------------------------- 182 (933)
T KOG1274|consen 145 SYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKD----------------------------------------- 182 (933)
T ss_pred eEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCcc-----------------------------------------
Confidence 9999998 6899999999999999876544333110000
Q ss_pred ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL 356 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (441)
.. ......+..++|+|+|..++....|+.|++|+......... +.
T Consensus 183 ------n~----------------~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~------Lr------- 227 (933)
T KOG1274|consen 183 ------NE----------------FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK------LR------- 227 (933)
T ss_pred ------cc----------------ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee------ec-------
Confidence 00 00023467789999998999999999999999876542211 00
Q ss_pred EeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 357 ATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
+ ..|...+.++.|||.|+|||+++.|+.|.|||.+++.
T Consensus 228 ---~---------------------------~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 228 ---D---------------------------KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred ---c---------------------------cccccceEEEEEcCCCcEEeeeccCCcEEEEecccch
Confidence 0 1122336777777777777777777777777776533
No 111
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=1.7e-22 Score=201.58 Aligned_cols=246 Identities=22% Similarity=0.340 Sum_probs=188.8
Q ss_pred cceeEEEEeeCCCCEEEEEe--CCCcEEEEECCC------------CeEE-EEEecCCeeEEEeeccCCCCccEEEEEeC
Q 013545 104 YAISSAIWYPVDTGLFVTGS--YDHYVKVWDTNC------------TRVV-MNFKMPGKVYRTAMSPLAASHMLIAAGTE 168 (441)
Q Consensus 104 ~~V~~~~~~~~~~~~l~sgs--~D~~i~iWd~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~las~s~ 168 (441)
..|.++.++| ++..+|||| .|+.++||+... ...+ ....+.+.+.++.|++++ .+||+|++
T Consensus 14 ~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG---~~lAsGSD 89 (942)
T KOG0973|consen 14 KSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG---SYLASGSD 89 (942)
T ss_pred eeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC---CeEeeccC
Confidence 3477777776 899999999 999999997531 1111 122356778888899865 48999999
Q ss_pred CCcEEEEECCC----------C--------ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545 169 DVQVRLCDIAS----------G--------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230 (441)
Q Consensus 169 d~~I~vwdl~~----------~--------~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~ 230 (441)
|..|.+|.... | +....+.+|...|..+.|+|++. +|||+|-|++|-|||.++.+++.+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~v-- 166 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKV-- 166 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeee--
Confidence 99999999872 1 24567899999999999999987 689999999999999886543332
Q ss_pred cCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEE
Q 013545 231 QSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGL 310 (441)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 310 (441)
..+|.+.|-.+
T Consensus 167 ---------------------------------------------------------------------l~~H~s~VKGv 177 (942)
T KOG0973|consen 167 ---------------------------------------------------------------------LRGHQSLVKGV 177 (942)
T ss_pred ---------------------------------------------------------------------eecccccccce
Confidence 34688889999
Q ss_pred EEccCCCEEEEeecCCcEEEeeCCCCC---ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-----CceEEEEccCCc
Q 013545 311 KVTEDGMYLLSAGSDSRIRLWDVESGR---NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-----TAVKAFDIWSGK 382 (441)
Q Consensus 311 ~~s~dg~~l~sgs~D~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~wd~~~~~ 382 (441)
.|.|-|+||||=+.|++|++|.+..-. .....|+... ....-.++.++|||.+++++.. ..+.+.+-.+++
T Consensus 178 s~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~-~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk 256 (942)
T KOG0973|consen 178 SWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP-LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK 256 (942)
T ss_pred EECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC-CcceeeecccCCCcCeecchhhccCCcceeEEEecCCce
Confidence 999999999999999999999965411 0111111100 0112246788999999988743 368888888888
Q ss_pred eEeeecccccceEEEEEcCC-----CC------------eEEEeecCCcEEEeCCCCCCCC
Q 013545 383 TCLTFRGHYEYVNCCCFSSQ-----DQ------------ELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 383 ~~~~l~gh~~~v~~v~fspd-----~~------------~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
.-..|-||.+++.+++|+|. .+ .+|+||.|++|-||.-...+..
T Consensus 257 ~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 257 VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 89999999999999999992 12 5778999999999988766644
No 112
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.1e-22 Score=188.12 Aligned_cols=240 Identities=22% Similarity=0.333 Sum_probs=191.8
Q ss_pred CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccC-cccceeEEEEeeCCCCEEE
Q 013545 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG-HKYAISSAIWYPVDTGLFV 120 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~l~ 120 (441)
+...|+++.|++ +|.+|+.|..+|+|.|||+.+.+... ...+ |...|.+++|. ...+.
T Consensus 216 ~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~-----------------~~~~~h~~rvg~laW~---~~~ls 274 (484)
T KOG0305|consen 216 GEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTR-----------------TLRGSHASRVGSLAWN---SSVLS 274 (484)
T ss_pred CCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccc-----------------cccCCcCceeEEEecc---CceEE
Confidence 478999999996 68899999999999999987554321 1124 88889999996 56899
Q ss_pred EEeCCCcEEEEECCCCeEEEE-Ee-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545 121 TGSYDHYVKVWDTNCTRVVMN-FK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (441)
Q Consensus 121 sgs~D~~i~iWd~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f 198 (441)
+|+.|+.|..+|++..+.... +. +...+..+.++++. .++|+|+.|+.+.|||.....+...+..|.+.|.+++|
T Consensus 275 sGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~---~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~aw 351 (484)
T KOG0305|consen 275 SGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG---NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAW 351 (484)
T ss_pred EecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC---CeeccCCCccceEeccCCCccccEEEeccceeeeEeee
Confidence 999999999999987765444 32 23446667777754 58999999999999999888899999999999999999
Q ss_pred ecCCCcEEEEee--cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 199 STSSEWILVTGG--CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 199 sp~~~~~l~s~s--~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
+|-.+.+||+|+ .|+.|++||+.++.++..++.
T Consensus 352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--------------------------------------------- 386 (484)
T KOG0305|consen 352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT--------------------------------------------- 386 (484)
T ss_pred CCCccCceEEcCCCcccEEEEEEcCCCcEeccccc---------------------------------------------
Confidence 999888999965 699999999987765443211
Q ss_pred ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEe--ecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA--GSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 354 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg--s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 354 (441)
.+-|.+|.|++..+.|+++ -.+..|.||+..+.+. ...+..+.....
T Consensus 387 ---------------------------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~----~~~l~gH~~RVl 435 (484)
T KOG0305|consen 387 ---------------------------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL----VAELLGHTSRVL 435 (484)
T ss_pred ---------------------------CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce----eeeecCCcceeE
Confidence 1348999999999887764 5667899999987543 234445667788
Q ss_pred EEEeeCCCcEEEEeCC-CceEEEEccCC
Q 013545 355 QLATTQDPAVVFVPCM-TAVKAFDIWSG 381 (441)
Q Consensus 355 ~~~~~~~~~~~~~~~~-~~~~~wd~~~~ 381 (441)
.++.+||++.+++++. .++++|+++..
T Consensus 436 ~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 436 YLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEECCCCCEEEEecccCcEEeccccCC
Confidence 8999999999988765 79999999875
No 113
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=2.7e-21 Score=164.24 Aligned_cols=234 Identities=18% Similarity=0.288 Sum_probs=182.2
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
...+|.+.|-.++++|...+.+++++.|.+|++||...++.. ..++. ..+.+ -+.|+| +++
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~------------~~i~~-----~~eni-~i~wsp-~g~ 119 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT------------ARIET-----KGENI-NITWSP-DGE 119 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE------------EEeec-----cCcce-EEEEcC-CCC
Confidence 456899999999999998899999999999999999866532 11111 11122 356776 788
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~ 197 (441)
+++.++.|..|.+.|.++.+.....++.-.+.-+.+.. ++.++..-...|.|.|.....-+++++++.|+....||.
T Consensus 120 ~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~---~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~ 196 (313)
T KOG1407|consen 120 YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNN---SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIE 196 (313)
T ss_pred EEEEecCcccEEEEEecccceeehhcccceeeeeeecC---CCCEEEEecCCceEEEEeccccccccccccCCcceEEEE
Confidence 99999999999999999988887777666666666663 233444445578999999999999999999999999999
Q ss_pred EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 277 (441)
Q Consensus 198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
|+|+|++ ||+|+.|-.+-+||+...-|.+.+.
T Consensus 197 f~p~Gry-fA~GsADAlvSLWD~~ELiC~R~is----------------------------------------------- 228 (313)
T KOG1407|consen 197 FDPDGRY-FATGSADALVSLWDVDELICERCIS----------------------------------------------- 228 (313)
T ss_pred ECCCCce-EeeccccceeeccChhHhhhheeec-----------------------------------------------
Confidence 9999986 7999999999999998665555431
Q ss_pred cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545 278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA 357 (441)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (441)
-+.=+|+.|.||.||++||+||.|-.|-|=++++|..... + -..+....++
T Consensus 229 ------------------------RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e----I-~~~~~t~tVA 279 (313)
T KOG1407|consen 229 ------------------------RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE----I-PCEGPTFTVA 279 (313)
T ss_pred ------------------------cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE----e-eccCCceeEE
Confidence 1223699999999999999999999999999999875321 1 1234556788
Q ss_pred eeCCCcEEEEeCC
Q 013545 358 TTQDPAVVFVPCM 370 (441)
Q Consensus 358 ~~~~~~~~~~~~~ 370 (441)
+.|...+++.+|.
T Consensus 280 WHPk~~LLAyA~d 292 (313)
T KOG1407|consen 280 WHPKRPLLAYACD 292 (313)
T ss_pred ecCCCceeeEEec
Confidence 8888777777665
No 114
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.2e-21 Score=184.83 Aligned_cols=310 Identities=18% Similarity=0.257 Sum_probs=206.0
Q ss_pred CCCceeE--EEccCCC--CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 42 HKGSINS--LQVDLTE--ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 42 H~~~V~~--l~~s~~~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
|.-.|+- ..|++.. ...|+-+.+||.|.++|.+....- ..... ......|..+|..+.|.| ...
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-------~ee~~----lk~~~aH~nAifDl~wap-ge~ 113 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-------LEERQ----LKKPLAHKNAIFDLKWAP-GES 113 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcc-------hhhhh----hcccccccceeEeeccCC-Cce
Confidence 3345544 5566433 457999999999999998643210 00000 012347999999999998 566
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEE---EecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-------------
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMN---FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA------------- 181 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~------------- 181 (441)
+|++++.|.++|+||+++..++.. +.+.+.+.+.+|.+.. ..+|++|+-||.|.|||+.-..
T Consensus 114 ~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n--~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~ 191 (720)
T KOG0321|consen 114 LLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN--PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYG 191 (720)
T ss_pred eEEEccCCceeeeeeeccceeecceeecccccccchhhhccCC--CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhc
Confidence 899999999999999998887654 3455677788888764 4689999999999999985321
Q ss_pred -------ee-------eeecCCCCCeEE---EEEecCCCcEEEEeec-CCcEEEEEcCCCceeeEeccCCccccCCCCcc
Q 013545 182 -------IS-------QTLSGHRDGIMT---VEWSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243 (441)
Q Consensus 182 -------~~-------~~l~~h~~~v~~---v~fsp~~~~~l~s~s~-Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~ 243 (441)
.. ..-..|...|.+ +-+..|.. .|||+|. |+.||+||+|+..+....+. .+.
T Consensus 192 ~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep----~~~----- 261 (720)
T KOG0321|consen 192 RHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEP----RGS----- 261 (720)
T ss_pred cccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCC----Ccc-----
Confidence 00 011233444444 44445544 5788887 99999999997643211100 000
Q ss_pred cccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee
Q 013545 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG 323 (441)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 323 (441)
+ .+.. .. ...-.+.++....-|.+|.+..
T Consensus 262 ------------------------------------------~-~~~t----~s----krs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 262 ------------------------------------------D-KYPT----HS----KRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred ------------------------------------------c-CccC----cc----cceeeeEEEEecCCCCeEEEEe
Confidence 0 0000 00 0011266788888889988888
Q ss_pred cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCc-eEeeecccccceEEEEEcC
Q 013545 324 SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK-TCLTFRGHYEYVNCCCFSS 401 (441)
Q Consensus 324 ~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~-~~~~l~gh~~~v~~v~fsp 401 (441)
.|++|++||+.+............+....-+....++++..++++.. ..+.+|.+.+-+ ....+.||.-.|++|+|.|
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 89999999998754322111111111122234566789999888866 689999997754 4567899999999999998
Q ss_pred CC-CeEEEeecCCcEEEeCCCCCCCC
Q 013545 402 QD-QELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 402 d~-~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
.. .-++||++|..++||++..+.-+
T Consensus 371 S~~t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 371 SATTPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred ccCCCceeeccCcceEEEeccCchhh
Confidence 64 45889999999999999665544
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=2.7e-22 Score=184.84 Aligned_cols=252 Identities=19% Similarity=0.259 Sum_probs=176.4
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEE----EEE-ecC-CeeEEEeeccCCCCccEEEEEeCCCcE
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV----MNF-KMP-GKVYRTAMSPLAASHMLIAAGTEDVQV 172 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~----~~~-~~~-~~~~~~~~~~~~~~~~~las~s~d~~I 172 (441)
..+|+..|.++.+-| .|-+|+|||.|-+|++||+...... ..+ +.+ ..+.++.+++.+ + .|++.+....+
T Consensus 163 l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg--~-~iLvvsg~aqa 238 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG--D-QILVVSGSAQA 238 (641)
T ss_pred ccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC--C-eEEEEecCcce
Confidence 457889999999877 5889999999999999998643321 111 122 236777788743 2 33334445789
Q ss_pred EEEECCCCceee------------eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCC
Q 013545 173 RLCDIASGAISQ------------TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRR 239 (441)
Q Consensus 173 ~vwdl~~~~~~~------------~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~ 239 (441)
+|+|-....... .-+||...++|..|+|..+..|+|++.||++||||+..-+ ...+++...
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~------ 312 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP------ 312 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc------
Confidence 999975433221 2369999999999999988889999999999999987532 222221100
Q ss_pred CCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE
Q 013545 240 PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319 (441)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 319 (441)
..+.--+++.++|+|||+.|
T Consensus 313 ------------------------------------------------------------~~g~Rv~~tsC~~nrdg~~i 332 (641)
T KOG0772|consen 313 ------------------------------------------------------------AGGKRVPVTSCAWNRDGKLI 332 (641)
T ss_pred ------------------------------------------------------------CCCcccCceeeecCCCcchh
Confidence 00112358889999999999
Q ss_pred EEeecCCcEEEeeCCCCCceeeeeeeEEeccC--cceEEEeeCCCcEEEEeCC-CceEEEEccCC-ceEeeecccc--cc
Q 013545 320 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTS--KPIQLATTQDPAVVFVPCM-TAVKAFDIWSG-KTCLTFRGHY--EY 393 (441)
Q Consensus 320 ~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~-~~~~~l~gh~--~~ 393 (441)
|+|..||.|.+|+..+.... ..+.....+.. .+.+++|++||.++++-+. .++++||+..- +++.+..|-. .+
T Consensus 333 Aagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~ 411 (641)
T KOG0772|consen 333 AAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP 411 (641)
T ss_pred hhcccCCceeeeecCCcccc-cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence 99999999999997543211 12222333333 5678999999999888655 79999999764 4555555544 34
Q ss_pred eEEEEEcCCCCeEEEeecC------CcEEEeCCC
Q 013545 394 VNCCCFSSQDQELYTGGND------RQILVWCPS 421 (441)
Q Consensus 394 v~~v~fspd~~~l~s~s~D------~~i~vW~~~ 421 (441)
-++++||||.+.|+||..- +++.+++.-
T Consensus 412 ~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 412 GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred CCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 6889999999999997542 445555543
No 116
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=8.1e-21 Score=174.76 Aligned_cols=300 Identities=18% Similarity=0.256 Sum_probs=208.9
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECC--CCcc---cCCCCce-------------eccceeEEeec-----c
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQ--RATD---YEGGGHI-------------AKHRSVFVVDK-----Q 97 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~--~~~~---~~~~~~~-------------~~~~~~~~~~~-----~ 97 (441)
.|.+.|++|+.- .+| .|+||+.|..|..||-. +..+ ++..+.+ .+.+.++...- .
T Consensus 285 aH~ggv~~L~~l-r~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 285 AHDGGVFSLCML-RDG-TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred ecCCceEEEEEe-cCc-cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence 899999999986 456 48889999999999832 1111 1111111 01111111110 1
Q ss_pred cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
.-.+|..+...++.+| +.++++|++.|+.+++|+ ..+++.+.....+..+..|+|.+ .+|.|+..|...+.|.
T Consensus 363 ~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg----~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG----VVAVGTATGRWFVLDT 435 (626)
T ss_pred EEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc----eEEEeeccceEEEEec
Confidence 1248999998888887 567999999999999999 56677777777788888898853 7899999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
++...+..-.. ..++++++|+|+|. +||.|+.|+.|.||-+...+.....
T Consensus 436 e~~~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r---------------------------- 485 (626)
T KOG2106|consen 436 ETQDLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSR---------------------------- 485 (626)
T ss_pred ccceeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEE----------------------------
Confidence 99666544444 88999999999998 5799999999999987643211000
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
. ...|..+|+.|+||+|+++|.+-|.|..|-+|.....+
T Consensus 486 ---------------------------------------~--~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~ 524 (626)
T KOG2106|consen 486 ---------------------------------------V--GKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECK 524 (626)
T ss_pred ---------------------------------------e--eeecCceeEEeeecCCCceEEeccCceEEEEEccccCc
Confidence 0 01233689999999999999999999999999554332
Q ss_pred ceee-------------eeeeEEeccCc-ceEEEeeCCCcEEEEeCC-CceEEEEc---cCCceEeeecccccceEEEEE
Q 013545 338 NTLV-------------NFETVRLQTSK-PIQLATTQDPAVVFVPCM-TAVKAFDI---WSGKTCLTFRGHYEYVNCCCF 399 (441)
Q Consensus 338 ~~~~-------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~wd~---~~~~~~~~l~gh~~~v~~v~f 399 (441)
.... .|+......+. ...++.+....+++++-. +.+++|.. .-....+++.||.+.|.+|+|
T Consensus 525 ~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~F 604 (626)
T KOG2106|consen 525 QITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAF 604 (626)
T ss_pred ccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEE
Confidence 2111 01110000111 112223333444444333 46888864 234556789999999999999
Q ss_pred cCCCCeEEEeecCCcEEEeCC
Q 013545 400 SSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 400 spd~~~l~s~s~D~~i~vW~~ 420 (441)
+.+..+|.+.+.|.+|..|++
T Consensus 605 l~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 605 LCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eeCCceEEecCCCceEEEEEe
Confidence 999999998889999999985
No 117
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=7.4e-21 Score=181.11 Aligned_cols=378 Identities=19% Similarity=0.267 Sum_probs=225.4
Q ss_pred eecCCCCceeEEEccCCCC--cEEEEeeCCCcEEEEECCCCcccC---C--CCceeccceeEEee---------cccccC
Q 013545 38 IVSPHKGSINSLQVDLTEE--RYLLSGASDSSVAVYDVQRATDYE---G--GGHIAKHRSVFVVD---------KQHEHG 101 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~--~~l~s~s~Dg~i~iwd~~~~~~~~---~--~~~~~~~~~~~~~~---------~~~~~~ 101 (441)
.+.||.+.|-+|+|....+ -+|+|+|.|..||||.+.-..... . .-.+....+++... .....|
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G 265 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG 265 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence 3679999999999986544 378999999999999874322100 0 00011112222221 123359
Q ss_pred cccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC--eEEEEEec---C---CeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT--RVVMNFKM---P---GKVYRTAMSPLAASHMLIAAGTEDVQVR 173 (441)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~--~~~~~~~~---~---~~~~~~~~~~~~~~~~~las~s~d~~I~ 173 (441)
|.+-|.++-|.| .+-.|+|+|.|+++.+|...+. --+-...+ . +..+...+++.. ..+++-+..|-.+
T Consensus 266 HeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~---~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 266 HEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS---NVIIAHGRTGGFH 341 (764)
T ss_pred cccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC---CEEEEecccCcEE
Confidence 999999999998 4678999999999999987544 22222222 1 234566666653 3555566778899
Q ss_pred EEECCCCc---eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC-CC----------------ceeeEeccCC
Q 013545 174 LCDIASGA---ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR-RA----------------GCFRVLDQSQ 233 (441)
Q Consensus 174 vwdl~~~~---~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~-~~----------------~~~~~~~~~~ 233 (441)
+|-.+... ....+.||.+.|..|+|+|.|++ |+|.|.|.+-|+|--- .. .|+..+....
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCE-EEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 99944432 23457899999999999999995 6799999999998542 00 1221111100
Q ss_pred ccccC-CCCcccccccc--------cCccCCcCCC--CCC--cccCCCCCccccC-----cccc------------cC--
Q 013545 234 SQLGR-RPPLLKRKSLS--------AGQNSSVKPR--APQ--KRSANGNGVRQSS-----VGRI------------PA-- 281 (441)
Q Consensus 234 ~~~~~-~~~~~~~~~~~--------~~~~~~~~~~--~~~--~~~~~~~~~~~~~-----~~~~------------~~-- 281 (441)
.-+.. ..........+ .-........ .+. ..+.-|...+... .+.. +.
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 00000 00000000000 0000000000 000 0000000000000 0000 00
Q ss_pred -CCCccccc-CCCcccccccceeeccCeEEEEEccCCCEEEEeecCC-----cEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545 282 -KGSVRQRL-HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS-----RIRLWDVESGRNTLVNFETVRLQTSKPI 354 (441)
Q Consensus 282 -~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 354 (441)
..++...+ ..-...+...+.+|.-.|.+++.+|+|+.+||+..-. -|++|+..+-... ..+..+.-...
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~----~~L~~HsLTVT 576 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV----QELEGHSLTVT 576 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh----heecccceEEE
Confidence 00000000 0011112234568999999999999999999987654 5899998764321 12233344456
Q ss_pred EEEeeCCCcEEEEeCC-CceEEEEccCCce----EeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 355 QLATTQDPAVVFVPCM-TAVKAFDIWSGKT----CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 355 ~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~----~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
+++++||++++++++. .++.+|..-+... ...++.|+.-||++.|+||+++++|+|.|++|++|..+..+
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 7999999999998877 4778887633221 23478999999999999999999999999999999887763
No 118
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=7.6e-22 Score=192.32 Aligned_cols=204 Identities=21% Similarity=0.303 Sum_probs=159.5
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+.||.+.|..|.||- ..+|+|+|.|.|+|||++....++ .++ .|.+-|+|++|+|.|..
T Consensus 364 ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL----------~~F--------~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 364 EFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECL----------KVF--------SHNDFVTCVAFNPVDDR 423 (712)
T ss_pred hhhccchhheeccccc--CCeeEeccccccEEeecCCCccee----------eEE--------ecCCeeEEEEecccCCC
Confidence 3569999999999983 459999999999999998755432 111 59999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec---------C
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS---------G 188 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~---------~ 188 (441)
+|+|||.|+.||||++...+++.-..+..-+.++++.|++. ..+.|+.+|.+++|+....++..... .
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk---~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGK---GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCc---eEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence 99999999999999999888876666777789999999754 67789999999999998877654331 1
Q ss_pred CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545 189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG 268 (441)
Q Consensus 189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (441)
|. .|+.+.|.|.....++..+.|..|||+|.+.-..+..|+...
T Consensus 501 ~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~----------------------------------- 544 (712)
T KOG0283|consen 501 GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR----------------------------------- 544 (712)
T ss_pred Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-----------------------------------
Confidence 33 799999998765433445789999999997533222221100
Q ss_pred CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545 269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~ 334 (441)
....-....|+.||++|++++.|..|++|+..
T Consensus 545 ----------------------------------n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 545 ----------------------------------NTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ----------------------------------cCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 01122345799999999999999999999974
No 119
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3e-23 Score=198.14 Aligned_cols=254 Identities=20% Similarity=0.386 Sum_probs=195.3
Q ss_pred cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC
Q 013545 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT 136 (441)
Q Consensus 57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~ 136 (441)
.++.....+-.+++||.+.. ..|...|.++.. ...+..+++|++|..+-+|.+...
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~~-----------------------~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp 60 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTREF-----------------------VAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKP 60 (825)
T ss_pred cccceeeeeeccccccchhh-----------------------hhhhhhhceeee-eccceeeccCCCceeeccccccCC
Confidence 45666667777788886532 257777777766 335678999999999999998777
Q ss_pred eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcE
Q 013545 137 RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI 215 (441)
Q Consensus 137 ~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I 215 (441)
..++.+. +.+++.++.|.+. ..+|++|+.+|.|++|||+.++.+++|.||...+.+|.|+|-+.+ +|+|+.|..+
T Consensus 61 ~~i~S~~~hespIeSl~f~~~---E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~ 136 (825)
T KOG0267|consen 61 NAITSLTGHESPIESLTFDTS---ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTDL 136 (825)
T ss_pred chhheeeccCCcceeeecCcc---hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEE-eccccccccc
Confidence 7776655 4567888888774 458999999999999999999999999999999999999999975 6999999999
Q ss_pred EEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccc
Q 013545 216 RFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLS 295 (441)
Q Consensus 216 ~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (441)
++||++..+|...+
T Consensus 137 ~iwD~Rk~Gc~~~~------------------------------------------------------------------ 150 (825)
T KOG0267|consen 137 KIWDIRKKGCSHTY------------------------------------------------------------------ 150 (825)
T ss_pred eehhhhccCceeee------------------------------------------------------------------
Confidence 99999976654433
Q ss_pred ccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceE
Q 013545 296 SQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVK 374 (441)
Q Consensus 296 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 374 (441)
.+|..-|..+.|+|+|+++++|+.|.++++||...++.. ..|. .+......+-+.+..-++..++. .+++
T Consensus 151 -----~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-~ef~---~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 151 -----KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-KEFK---SHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred -----cCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-cccc---cccccccccccCchhhhhccCCCCceee
Confidence 236667889999999999999999999999999877532 1222 12222333333333323333332 5899
Q ss_pred EEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545 375 AFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR 413 (441)
Q Consensus 375 ~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~ 413 (441)
.||+++.+.......-...|.|++|+||++.+++|..+.
T Consensus 222 f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 222 FWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 999998888877777788999999999999999886653
No 120
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1e-21 Score=178.24 Aligned_cols=254 Identities=21% Similarity=0.323 Sum_probs=178.7
Q ss_pred CcEEEEeeCCCcEEEEECCCCcc-cCC--CCceeccceeEEee-cccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEE
Q 013545 56 ERYLLSGASDSSVAVYDVQRATD-YEG--GGHIAKHRSVFVVD-KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVW 131 (441)
Q Consensus 56 ~~~l~s~s~Dg~i~iwd~~~~~~-~~~--~~~~~~~~~~~~~~-~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iW 131 (441)
++|+|-|..|..|.|||+.-... ++. .+...+........ .....+|+.+|..+.+...-.++|||||.|.||++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 57999999999999999853221 110 00000000000000 011348999999999877667899999999999999
Q ss_pred ECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEee
Q 013545 132 DTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG 210 (441)
Q Consensus 132 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s 210 (441)
|+.++++...+. +.+++..+.|++..+ ..|++|+.|++|.+.|++........=.-.+.|-.++|.|.....++++.
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCc--eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 999999998888 467799999998754 58999999999999999853222111123567889999999888888999
Q ss_pred cCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCccccc
Q 013545 211 CDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL 289 (441)
Q Consensus 211 ~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (441)
.||+++-+|+|... ++.
T Consensus 350 ddG~v~~~D~R~~~~~vw-------------------------------------------------------------- 367 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVW-------------------------------------------------------------- 367 (463)
T ss_pred CCceEEeeecCCCCCcee--------------------------------------------------------------
Confidence 99999999999641 111
Q ss_pred CCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe
Q 013545 290 HPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP 368 (441)
Q Consensus 290 ~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (441)
...+|.++|.+|++++.- .+++|+|.|++|++|++.........-+.+.
T Consensus 368 ---------t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~--------------------- 417 (463)
T KOG0270|consen 368 ---------TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK--------------------- 417 (463)
T ss_pred ---------EEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc---------------------
Confidence 135799999999998764 4788999999999999875433211100000
Q ss_pred CCCceEEEEccCCceEeeecccccceEEEEEcCCCC-eEEEeecCCcEEEeCCCCCCC
Q 013545 369 CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 369 ~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~-~l~s~s~D~~i~vW~~~~~~~ 425 (441)
-+...|.++.|+-- +|+.||..+.++|||..++..
T Consensus 418 ----------------------~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 418 ----------------------LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ----------------------ccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 01255666777653 466777777888998876653
No 121
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1.7e-21 Score=168.15 Aligned_cols=232 Identities=18% Similarity=0.280 Sum_probs=172.7
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe------EEEEEe------c-CCe---eEEEeeccCCCCccEEE
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR------VVMNFK------M-PGK---VYRTAMSPLAASHMLIA 164 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~------~~~~~~------~-~~~---~~~~~~~~~~~~~~~la 164 (441)
-|.+.|+++.+-+..+.+++||+.|+.|-+||++.-. .+.... + .++ +..+.+.|.. .-++.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D--tGmFt 118 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID--TGMFT 118 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec--Cceee
Confidence 5888999999988889999999999999999987533 111111 1 122 3445566654 34788
Q ss_pred EEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC--CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCc
Q 013545 165 AGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS--EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPL 242 (441)
Q Consensus 165 s~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~--~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~ 242 (441)
+++-|..++|||.+|-+....|. -.+.|.+-+++|-. .+++|+|..|-.||+=|+.++.+-.+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~-------------- 183 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT-------------- 183 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee--------------
Confidence 99999999999999987766664 45677777777753 45788888899999999988754332
Q ss_pred ccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEE
Q 013545 243 LKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLS 321 (441)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s 321 (441)
+.+|.+.|.+|.|+|...+ |+|
T Consensus 184 ---------------------------------------------------------LsGHr~~vlaV~Wsp~~e~vLat 206 (397)
T KOG4283|consen 184 ---------------------------------------------------------LSGHRDGVLAVEWSPSSEWVLAT 206 (397)
T ss_pred ---------------------------------------------------------eccccCceEEEEeccCceeEEEe
Confidence 3578889999999999876 679
Q ss_pred eecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcC
Q 013545 322 AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 401 (441)
Q Consensus 322 gs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp 401 (441)
||.||+||+||++.....+ ..+..+... .-..+++-.+|.+.|+.++|+.
T Consensus 207 gsaDg~irlWDiRrasgcf---~~lD~hn~k---------------------------~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 207 GSADGAIRLWDIRRASGCF---RVLDQHNTK---------------------------RPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred cCCCceEEEEEeeccccee---EEeecccCc---------------------------cCccccccccccceeeeeeecc
Confidence 9999999999998643222 121111100 0011223457999999999999
Q ss_pred CCCeEEEeecCCcEEEeCCCCCCCCCccCCccCCc
Q 013545 402 QDQELYTGGNDRQILVWCPSRHISDGVDAGPMQDQ 436 (441)
Q Consensus 402 d~~~l~s~s~D~~i~vW~~~~~~~~~~~~~~~~~~ 436 (441)
|+.++++++.|..+|+|+...++..-...||.-.+
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n 291 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHN 291 (397)
T ss_pred cchhhhhccCccceEEeecccCccccccccccccc
Confidence 99999999999999999999999887777776543
No 122
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=173.78 Aligned_cols=212 Identities=24% Similarity=0.411 Sum_probs=160.8
Q ss_pred CcccceeEEEEeeC-CCCEEEEEeCCCcEEEEECCC----------------CeEEEEEec-CCeeEEEeeccCCCCccE
Q 013545 101 GHKYAISSAIWYPV-DTGLFVTGSYDHYVKVWDTNC----------------TRVVMNFKM-PGKVYRTAMSPLAASHML 162 (441)
Q Consensus 101 ~h~~~V~~~~~~~~-~~~~l~sgs~D~~i~iWd~~~----------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 162 (441)
+|.+.++-+...+. +..+.|+=+..|.|+|||+.. .+++.++.. .+.-+.+.|+|...+ .
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g--~ 226 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG--R 226 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc--c
Confidence 67777887777665 345667778899999999742 122333332 234577888885433 4
Q ss_pred EEEEeCCCcEEEEECCCCce---eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCC
Q 013545 163 IAAGTEDVQVRLCDIASGAI---SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR 239 (441)
Q Consensus 163 las~s~d~~I~vwdl~~~~~---~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~ 239 (441)
|++|.--+.|++|...+|.- ...+.+|+..|..+.|||.-+.+|+|||.||+|||||+|.+..-..
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~----------- 295 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA----------- 295 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce-----------
Confidence 67776678899999988753 2457789999999999999888999999999999999997521000
Q ss_pred CCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE
Q 013545 240 PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319 (441)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 319 (441)
...++|.+.|+-|.|+.+-.+|
T Consensus 296 ----------------------------------------------------------~~~kAh~sDVNVISWnr~~~lL 317 (440)
T KOG0302|consen 296 ----------------------------------------------------------VSTKAHNSDVNVISWNRREPLL 317 (440)
T ss_pred ----------------------------------------------------------eEeeccCCceeeEEccCCccee
Confidence 0024688889999999998899
Q ss_pred EEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEE
Q 013545 320 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF 399 (441)
Q Consensus 320 ~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f 399 (441)
|+|+.||+++|||++.-+ .++.+.+|.-|+.+|+||.|
T Consensus 318 asG~DdGt~~iwDLR~~~------------------------------------------~~~pVA~fk~Hk~pItsieW 355 (440)
T KOG0302|consen 318 ASGGDDGTLSIWDLRQFK------------------------------------------SGQPVATFKYHKAPITSIEW 355 (440)
T ss_pred eecCCCceEEEEEhhhcc------------------------------------------CCCcceeEEeccCCeeEEEe
Confidence 999999999999997532 12344566779999999999
Q ss_pred cCCC-CeEEEeecCCcEEEeCCCCCCC
Q 013545 400 SSQD-QELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 400 spd~-~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
+|.. ..|+++|+|.+|.|||++..+-
T Consensus 356 ~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 356 HPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred ccccCceEEeccCCCcEEEEEeeccCC
Confidence 9964 5577889999999999986554
No 123
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.1e-21 Score=167.28 Aligned_cols=239 Identities=23% Similarity=0.397 Sum_probs=164.0
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC-CC
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD-TG 117 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~ 117 (441)
+..|.+++++++.+ +.|+||||.|.+|+|||..+.... +....|.+.|+++.|.++- ..
T Consensus 39 ~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~ql-----------------g~ll~HagsitaL~F~~~~S~s 98 (362)
T KOG0294|consen 39 FSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQL-----------------GILLSHAGSITALKFYPPLSKS 98 (362)
T ss_pred ccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhh-----------------cceeccccceEEEEecCCcchh
Confidence 45899999999996 579999999999999999765432 1123589999999997743 23
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-CCCCCeEE
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMT 195 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-~h~~~v~~ 195 (441)
.|+||++||.|.+|++....++..++. .+.+..++++|.+ .+..+.+.|+.+++|||-+|+....++ .|.. +.
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~---KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a--t~ 173 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG---KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA--TL 173 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC---ceEEEEcCCceeeeehhhcCccceeeccCCcc--ee
Confidence 799999999999999999888887774 5678899999854 467777889999999999998665554 2332 44
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
|.|+|.|+++ +-++. ..|-+|.+.+.+.+..++...... ....+. +.-+....
T Consensus 174 v~w~~~Gd~F-~v~~~-~~i~i~q~d~A~v~~~i~~~~r~l-------~~~~l~------------------~~~L~vG~ 226 (362)
T KOG0294|consen 174 VSWSPQGDHF-VVSGR-NKIDIYQLDNASVFREIENPKRIL-------CATFLD------------------GSELLVGG 226 (362)
T ss_pred eEEcCCCCEE-EEEec-cEEEEEecccHhHhhhhhccccce-------eeeecC------------------CceEEEec
Confidence 9999999964 44443 579999988766555443211000 000000 00000000
Q ss_pred -cccccCCCCcccccCCCcccccccceeeccCeEEEEE--ccCCCEEEEeecCCcEEEeeCCCC
Q 013545 276 -VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV--TEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 276 -~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
++.+. ............+.+|...|-++.+ .|++.+|+|+|.||.|++||++..
T Consensus 227 d~~~i~-------~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 227 DNEWIS-------LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCceEE-------EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 00000 0000001122345789999998873 367899999999999999999864
No 124
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.4e-21 Score=173.34 Aligned_cols=287 Identities=19% Similarity=0.297 Sum_probs=209.0
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC-EEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG-LFVT 121 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-~l~s 121 (441)
.+.|+++.|+|. -..|++|+.||+++||-+..-... ...++ +--+.+|.++.|.| +|. ++++
T Consensus 213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~-------~lqS~--------~l~~fPi~~a~f~p-~G~~~i~~ 275 (514)
T KOG2055|consen 213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNP-------KLQSI--------HLEKFPIQKAEFAP-NGHSVIFT 275 (514)
T ss_pred cCCceEEEecCC-CceEEEecCCCcEEEEEecCccCh-------hheee--------eeccCccceeeecC-CCceEEEe
Confidence 379999999974 678999999999999988643321 11111 12345788888887 555 9999
Q ss_pred EeCCCcEEEEECCCCeEEEEEecCC----eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545 122 GSYDHYVKVWDTNCTRVVMNFKMPG----KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (441)
Q Consensus 122 gs~D~~i~iWd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~ 197 (441)
+|.-..+-.||+.+.+........+ ....+.+++++. +|+..+..|.|.+.-..|++.+.+++ -.+.|..+.
T Consensus 276 s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~---fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~ 351 (514)
T KOG2055|consen 276 SGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN---FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFT 351 (514)
T ss_pred cccceEEEEeeccccccccccCCCCcccchhheeEecCCCC---eEEEcccCceEEeehhhhhhhhheee-eccEEeeEE
Confidence 9999999999998877654333322 245566777643 78888899999999999999988886 367789999
Q ss_pred EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 277 (441)
Q Consensus 198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
|+.+++.+ +.++.+|.|.+||++...|++.+....
T Consensus 352 fsSdsk~l-~~~~~~GeV~v~nl~~~~~~~rf~D~G-------------------------------------------- 386 (514)
T KOG2055|consen 352 FSSDSKEL-LASGGTGEVYVWNLRQNSCLHRFVDDG-------------------------------------------- 386 (514)
T ss_pred EecCCcEE-EEEcCCceEEEEecCCcceEEEEeecC--------------------------------------------
Confidence 99999865 556678999999999887776542100
Q ss_pred cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee--eeeeeEEeccCcceE
Q 013545 278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL--VNFETVRLQTSKPIQ 355 (441)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~ 355 (441)
.. .-+++|.|+++.|||+||.-|-|.|||..+..... .+..++.-....+..
T Consensus 387 -----------------------~v---~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 387 -----------------------SV---HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred -----------------------cc---ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 00 13578899999999999999999999976532111 111111112234456
Q ss_pred EEeeCCCcEEEEeCC---CceEEEEccCCceEeeeccc---ccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 356 LATTQDPAVVFVPCM---TAVKAFDIWSGKTCLTFRGH---YEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 356 ~~~~~~~~~~~~~~~---~~~~~wd~~~~~~~~~l~gh---~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
+.|++|..+++.++. .++|+..+-+......+..- -+.|+||+|||.|.+||-|-++|.+.+|.+.
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 788899888776644 47888887665555544432 3459999999999999999999999999763
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.2e-20 Score=160.09 Aligned_cols=275 Identities=16% Similarity=0.152 Sum_probs=199.7
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
.+....|.++.|+|. ...|+.+|.||++++||+..... .....|..++.+++|.+ ...+
T Consensus 10 npP~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l------------------~~~~~~~~plL~c~F~d--~~~~ 68 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSL------------------KLKFKHGAPLLDCAFAD--ESTI 68 (323)
T ss_pred CCChhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhh------------------hhheecCCceeeeeccC--CceE
Confidence 466789999999965 45677778999999999875421 11235888999999875 5579
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEe
Q 013545 120 VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fs 199 (441)
++|+.|+.||.+|+.++....--.+.+.+.++...+. ...+++|+.|+.|++||........++. ....|.++..+
T Consensus 69 ~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~---~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~ 144 (323)
T KOG1036|consen 69 VTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYE---VGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS 144 (323)
T ss_pred EEeccCceEEEEEecCCcceeeccCCCceEEEEeecc---CCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc
Confidence 9999999999999999887666667777888887753 3478899999999999998754444443 34478888876
Q ss_pred cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI 279 (441)
Q Consensus 200 p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (441)
.+ .|+.|..|..|.+||+|+.......
T Consensus 145 g~---~LvVg~~~r~v~iyDLRn~~~~~q~-------------------------------------------------- 171 (323)
T KOG1036|consen 145 GN---RLVVGTSDRKVLIYDLRNLDEPFQR-------------------------------------------------- 171 (323)
T ss_pred CC---EEEEeecCceEEEEEcccccchhhh--------------------------------------------------
Confidence 43 4677888999999999863211000
Q ss_pred cCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce---eeeeeeEEecc------
Q 013545 280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT---LVNFETVRLQT------ 350 (441)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~---~~~~~~~~~~~------ 350 (441)
+...-.-.+++|++-|++.-.+.+|-||+|.+=.+...... .-.|...+...
T Consensus 172 -------------------reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~ 232 (323)
T KOG1036|consen 172 -------------------RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII 232 (323)
T ss_pred -------------------ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence 00000123789999999888999999999887555443110 01122222211
Q ss_pred CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec
Q 013545 351 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 411 (441)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~ 411 (441)
-+...++++|-...+++++. +-|.+||+.+.+.+..|..-+..|..++|+.||..||.|+.
T Consensus 233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 12345777887666777655 67899999999999999888888999999999999998764
No 126
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.9e-20 Score=155.87 Aligned_cols=220 Identities=23% Similarity=0.352 Sum_probs=159.4
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcc------cC---CCCcee---------ccc-----------ee
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATD------YE---GGGHIA---------KHR-----------SV 91 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~------~~---~~~~~~---------~~~-----------~~ 91 (441)
-|.+.|+|.+|+| .|++|+|||+|++|++-.....+. ++ ..+.+. +.. .+
T Consensus 87 hhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 87 HHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred ccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 4789999999997 578999999999999875432211 10 000000 000 11
Q ss_pred EEeec------ccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec---C-----CeeEEEeeccCC
Q 013545 92 FVVDK------QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM---P-----GKVYRTAMSPLA 157 (441)
Q Consensus 92 ~~~~~------~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~---~-----~~~~~~~~~~~~ 157 (441)
+..+- +...||++-|.++-.. ++-+|+|||.|.+||+||++-..++.+... . ..+..++..|
T Consensus 166 y~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-- 241 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-- 241 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC--
Confidence 11111 1234899888766443 477999999999999999988777765532 1 2345555555
Q ss_pred CCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCcccc
Q 013545 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLG 237 (441)
Q Consensus 158 ~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~ 237 (441)
+..+|++|..|....+||+..+..++.+..|...|.||.|+|.-. .|++||-|..|++=|+...-
T Consensus 242 -sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdl------------- 306 (350)
T KOG0641|consen 242 -SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDL------------- 306 (350)
T ss_pred -CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccch-------------
Confidence 456999999999999999999999999999999999999999865 57899999999999985210
Q ss_pred CCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC
Q 013545 238 RRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM 317 (441)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 317 (441)
...+ .......|.+.+..+.|+|..-
T Consensus 307 ------------------------------------------------a~el------~~~vv~ehkdk~i~~rwh~~d~ 332 (350)
T KOG0641|consen 307 ------------------------------------------------AHEL------PIMVVAEHKDKAIQCRWHPQDF 332 (350)
T ss_pred ------------------------------------------------hhcC------ceEEEEeccCceEEEEecCccc
Confidence 0000 0001235778888999999999
Q ss_pred EEEEeecCCcEEEeeCC
Q 013545 318 YLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 318 ~l~sgs~D~~i~~wd~~ 334 (441)
.+++.++|+++.+|-+.
T Consensus 333 sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 333 SFISSSADKTATLWALN 349 (350)
T ss_pred eeeeccCcceEEEeccC
Confidence 99999999999999653
No 127
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1.2e-21 Score=170.01 Aligned_cols=215 Identities=24% Similarity=0.426 Sum_probs=163.0
Q ss_pred cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC------------------eEEEE-EecCCeeEEEeeccCCCCc
Q 013545 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT------------------RVVMN-FKMPGKVYRTAMSPLAASH 160 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~------------------~~~~~-~~~~~~~~~~~~~~~~~~~ 160 (441)
..|+.++.+..|++ ||.++||||.|..|||.|++.. -++++ +.+...+..+.|+|. .
T Consensus 109 t~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr---e 184 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR---E 184 (430)
T ss_pred eecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch---h
Confidence 36999998888887 8999999999999999998610 11222 223456777888874 4
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeee--cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccC
Q 013545 161 MLIAAGTEDVQVRLCDIASGAISQTL--SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR 238 (441)
Q Consensus 161 ~~las~s~d~~I~vwdl~~~~~~~~l--~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~ 238 (441)
.+|+||+.|++|++||.......+.+ -....+|.+++|+|.|+. |+.|..-.++|+||+.+..|+-...
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~T~Qcfvsan-------- 255 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSAN-------- 255 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCce-EEEecCCCceeEEeccceeEeeecC--------
Confidence 68999999999999999654322222 234678999999999995 5667777899999999876653211
Q ss_pred CCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE
Q 013545 239 RPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY 318 (441)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 318 (441)
....|.+.|++|.+++.|+.
T Consensus 256 ------------------------------------------------------------Pd~qht~ai~~V~Ys~t~~l 275 (430)
T KOG0640|consen 256 ------------------------------------------------------------PDDQHTGAITQVRYSSTGSL 275 (430)
T ss_pred ------------------------------------------------------------cccccccceeEEEecCCccE
Confidence 11357889999999999999
Q ss_pred EEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccc-cceEEE
Q 013545 319 LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY-EYVNCC 397 (441)
Q Consensus 319 l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~-~~v~~v 397 (441)
.++||.||-|++||--+++... ++. .+|. ..|.+.
T Consensus 276 YvTaSkDG~IklwDGVS~rCv~----t~~----------------------------------------~AH~gsevcSa 311 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRCVR----TIG----------------------------------------NAHGGSEVCSA 311 (430)
T ss_pred EEEeccCCcEEeeccccHHHHH----HHH----------------------------------------hhcCCceeeeE
Confidence 9999999999999966544210 000 2343 358899
Q ss_pred EEcCCCCeEEEeecCCcEEEeCCCCCC--CCCccCC
Q 013545 398 CFSSQDQELYTGGNDRQILVWCPSRHI--SDGVDAG 431 (441)
Q Consensus 398 ~fspd~~~l~s~s~D~~i~vW~~~~~~--~~~~~~~ 431 (441)
.|+.+|++++|.|.|.++++|-+.+++ ..++.+|
T Consensus 312 ~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg 347 (430)
T KOG0640|consen 312 VFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG 347 (430)
T ss_pred EEccCCeEEeecCCcceeeeeeecCCceEEEEecCC
Confidence 999999999999999999999999988 4455554
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=1.5e-19 Score=166.45 Aligned_cols=330 Identities=15% Similarity=0.211 Sum_probs=218.1
Q ss_pred ecCCCCceeEEEccCCCCcEEEEe---eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSG---ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~---s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
+..-...|+|++|++.++.-++.. |++-.+.+||-+.+... +.+. .....|..+.|+|.+
T Consensus 150 ~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~---~~vk--------------~sne~v~~a~FHPtd 212 (626)
T KOG2106|consen 150 IGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKL---GPVK--------------TSNEVVFLATFHPTD 212 (626)
T ss_pred eccccccceeeeecccCCCceEEEecCCCccccchhhchhhhcc---Ccce--------------eccceEEEEEeccCC
Confidence 334567899999998766444443 44455889997765432 1111 122356678899988
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEec-----CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM-----PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR 190 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~ 190 (441)
.++++++|. +-+-+|+.+.+.....-.. ...+.+++|.+.++ +++|.++|.|.||+..+.+..+....|.
T Consensus 213 ~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd----viTgDS~G~i~Iw~~~~~~~~k~~~aH~ 287 (626)
T KOG2106|consen 213 PNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD----VITGDSGGNILIWSKGTNRISKQVHAHD 287 (626)
T ss_pred CcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC----EEeecCCceEEEEeCCCceEEeEeeecC
Confidence 888888876 5789999988776543221 13477777777653 6789999999999998887777767999
Q ss_pred CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG 270 (441)
Q Consensus 191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (441)
+.|.++..-.+|. |+||+.|..|-.|| ...+..+..|- +.. ..++.... .....
T Consensus 288 ggv~~L~~lr~Gt--llSGgKDRki~~Wd-~~y~k~r~~el--Pe~-~G~iRtv~--------------------e~~~d 341 (626)
T KOG2106|consen 288 GGVFSLCMLRDGT--LLSGGKDRKIILWD-DNYRKLRETEL--PEQ-FGPIRTVA--------------------EGKGD 341 (626)
T ss_pred CceEEEEEecCcc--EeecCccceEEecc-ccccccccccC--chh-cCCeeEEe--------------------cCCCc
Confidence 9999999999985 57899999999999 22221111110 000 00000000 00000
Q ss_pred ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 350 (441)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~ 350 (441)
+.+....+....+.+...+ .....+|......++.+|....++|++.|+.+++|+ ..+... -+...
T Consensus 342 i~vGTtrN~iL~Gt~~~~f-------~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w-----t~~~~ 407 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGF-------TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW-----TKIIE 407 (626)
T ss_pred EEEeeccceEEEeeecCCc-------eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE-----EEEec
Confidence 1111111111111111111 012357888999999999999999999999999999 222211 12223
Q ss_pred CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545 351 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~ 429 (441)
....++.+.|.+ .++++.. +..-+.|.++..++..... ..++++|+|+|||.+||.|+.|+.|.|+.++.+......
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence 455677888888 5555433 5677888888666555444 889999999999999999999999999999987776666
Q ss_pred CCc
Q 013545 430 AGP 432 (441)
Q Consensus 430 ~~~ 432 (441)
.|+
T Consensus 486 ~~k 488 (626)
T KOG2106|consen 486 VGK 488 (626)
T ss_pred eee
Confidence 654
No 129
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1e-20 Score=164.75 Aligned_cols=250 Identities=18% Similarity=0.278 Sum_probs=193.4
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
+.||+++|+.++.-. ..+++.|+|.|.+.+||.++++.|+.++.. .|.+.++.|++ +..++++++.|++.+||..
T Consensus 144 ~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~---s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN---SGLLLLTASGDETAHIWKA 219 (481)
T ss_pred hcccccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEecc---ccceEEEccCCcchHHHHH
Confidence 459999999998865 456899999999999999999999988874 57899999988 4568999999999999962
Q ss_pred ------C------------------------------CC----ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEE
Q 013545 178 ------A------------------------------SG----AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217 (441)
Q Consensus 178 ------~------------------------------~~----~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~i 217 (441)
. ++ .++..|.||.+.|.+..|...++. ++++|+|.+..+
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRTAnl 298 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRTANL 298 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeecccccee
Confidence 1 01 134568899999999999988874 799999999999
Q ss_pred EEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccccc
Q 013545 218 WDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQ 297 (441)
Q Consensus 218 WD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (441)
||++++..+..
T Consensus 299 wDVEtge~v~~--------------------------------------------------------------------- 309 (481)
T KOG0300|consen 299 WDVETGEVVNI--------------------------------------------------------------------- 309 (481)
T ss_pred eeeccCceecc---------------------------------------------------------------------
Confidence 99987643321
Q ss_pred ccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEE
Q 013545 298 DRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAF 376 (441)
Q Consensus 298 ~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w 376 (441)
+.+|....+-++-+|..+++++.|.|.+.|+||+...-.. ...+..+.+......|..+.. +++++. .++|+|
T Consensus 310 --LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s---V~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvW 383 (481)
T KOG0300|consen 310 --LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS---VAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVW 383 (481)
T ss_pred --ccCcchhccccccCCcceEEEEeccCceeEeccchhhcce---eeeecccccceeEEEEecCCc-eeecCCCceEEEe
Confidence 3567788888899999999999999999999999843211 122233344444555555544 444444 689999
Q ss_pred EccC-CceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545 377 DIWS-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 377 d~~~-~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~ 429 (441)
|+.+ ...+.+++ -..+++.++.+..+..|+---.++.||++|++..++-++-
T Consensus 384 dLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 384 DLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred eeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 9966 44566766 3567999999987777877777789999999988866543
No 130
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.7e-20 Score=166.36 Aligned_cols=339 Identities=18% Similarity=0.231 Sum_probs=210.0
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
-+.+|.+.|++|.|+ .++++|+||+.|..+++|++...-.. ...++|-+. ...|...|.|+.|.. ...
T Consensus 51 D~~~H~GCiNAlqFS-~N~~~L~SGGDD~~~~~W~~de~~~~------k~~KPI~~~----~~~H~SNIF~L~F~~-~N~ 118 (609)
T KOG4227|consen 51 DVREHTGCINALQFS-HNDRFLASGGDDMHGRVWNVDELMVR------KTPKPIGVM----EHPHRSNIFSLEFDL-ENR 118 (609)
T ss_pred hhhhhccccceeeec-cCCeEEeecCCcceeeeechHHHHhh------cCCCCceec----cCccccceEEEEEcc-CCe
Confidence 356899999999998 57899999999999999998633210 111233222 235778899999976 456
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecC---CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-ee--eeecCCCC
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-IS--QTLSGHRD 191 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~--~~l~~h~~ 191 (441)
.+.||+.+++|.+.|+++.+.+-.+... |.++-+..+|. .++|++.+.++-|.+||..... .+ ..+.....
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~---DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT---DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred eEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC---CceEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 8899999999999999998887777654 46887777775 4578899999999999997654 22 22344566
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
...++.|+|..+.+|++.+.-+-+.+||+|.+..- ++ ..... .+................|+++
T Consensus 196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~-~~--------------~~~~~-~~L~~~~~~~M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARP-VY--------------QRSMF-KGLPQENTEWMGSLWSPSGNQF 259 (609)
T ss_pred cceeeeecCCCceeEEeccccCCCCceeeccccch-HH--------------hhhcc-ccCcccchhhhheeeCCCCCee
Confidence 77899999998889999999999999999864210 00 00000 0000000000011112233332
Q ss_pred cccCcccccCCCCcccccCCCccccccc--ceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe-
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDR--ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL- 348 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~- 348 (441)
....-+.-+...++..+-- ..++.... .......+.+++|-.|- .|+||+.+-.|++|-+...... -.|..+.-
T Consensus 260 msiRR~~~P~~~D~~S~R~-~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds-~G~~~IG~~ 336 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFISQRC-FVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDS-YGFTQIGHD 336 (609)
T ss_pred hhhhccCCCEEeeeecccc-eeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccc-cCccccCcc
Confidence 2222222111111111000 00000000 11223457788887665 4999999999999987643210 00000000
Q ss_pred ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545 349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV 428 (441)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~ 428 (441)
....+. .++ -.+.+.+|+||...++.|.|+|...+|+|.|-.+.++||.+. ++-+-
T Consensus 337 ~~~~~~---------~~~-------------i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~--r~P~~ 392 (609)
T KOG4227|consen 337 EEEMPS---------EIF-------------IEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH--RLPWS 392 (609)
T ss_pred hhhCch---------hhe-------------ecceeEEEecccccccceeecCCcceEeccchhhheeccccc--cCCcc
Confidence 000000 001 125677899999999999999999999999999999999874 33344
Q ss_pred cCCccC
Q 013545 429 DAGPMQ 434 (441)
Q Consensus 429 ~~~~~~ 434 (441)
..||..
T Consensus 393 ~D~~~E 398 (609)
T KOG4227|consen 393 YDLPFE 398 (609)
T ss_pred cCCccc
Confidence 555543
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=7.5e-19 Score=164.36 Aligned_cols=268 Identities=13% Similarity=0.146 Sum_probs=179.7
Q ss_pred ecCCCCceeEEEccCCCCcEE-EEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 39 VSPHKGSINSLQVDLTEERYL-LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
+.+| ..+.+++|+|+ ++.+ ++++.|+.|++||+.+++... .. ..+. .+..+.+++ +++
T Consensus 27 ~~~~-~~~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~------------~~-----~~~~-~~~~~~~~~-~g~ 85 (300)
T TIGR03866 27 FPVG-QRPRGITLSKD-GKLLYVCASDSDTIQVIDLATGEVIG------------TL-----PSGP-DPELFALHP-NGK 85 (300)
T ss_pred EECC-CCCCceEECCC-CCEEEEEECCCCeEEEEECCCCcEEE------------ec-----cCCC-CccEEEECC-CCC
Confidence 3344 34678999975 5554 788899999999987654210 00 0111 234566666 566
Q ss_pred EE-EEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC-cEEEEECCCCceeeeecCCCCCeEE
Q 013545 118 LF-VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-QVRLCDIASGAISQTLSGHRDGIMT 195 (441)
Q Consensus 118 ~l-~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~-~I~vwdl~~~~~~~~l~~h~~~v~~ 195 (441)
.+ ++++.|++|++||+.+.+.+..+........+.+++++ .+++++..++ .+.+||.++++....+.. ...+.+
T Consensus 86 ~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg---~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~ 161 (300)
T TIGR03866 86 ILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDG---KIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRF 161 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCC---CEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccE
Confidence 55 55667899999999988877777654445667777754 3566666554 577889998876654432 234578
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
+.|+|+++.+++++..++.|++||++++++...+......
T Consensus 162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~---------------------------------------- 201 (300)
T TIGR03866 162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG---------------------------------------- 201 (300)
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc----------------------------------------
Confidence 9999999876667777999999999876554433110000
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 354 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 354 (441)
. ... ......++|+|+++++. +.+.++++.+||+.+++... . ......+.
T Consensus 202 -------------~----------~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~----~-~~~~~~~~ 252 (300)
T TIGR03866 202 -------------V----------HPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD----Y-LLVGQRVW 252 (300)
T ss_pred -------------c----------ccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE----E-EEeCCCcc
Confidence 0 000 01134578999999854 44567789999998765321 1 11233566
Q ss_pred EEEeeCCCcEEEEeC--CCceEEEEccCCceEeeecccccceEEEEEcC
Q 013545 355 QLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 401 (441)
Q Consensus 355 ~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp 401 (441)
.+++++++..+++++ .+.+++||+.+++.+.++..+ +..+.++|+|
T Consensus 253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 253 QLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred eEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 788999999888764 468999999999999998866 4459999886
No 132
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5.4e-20 Score=160.28 Aligned_cols=282 Identities=17% Similarity=0.248 Sum_probs=207.6
Q ss_pred eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCC
Q 013545 46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD 125 (441)
Q Consensus 46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D 125 (441)
-+|+.|++ .|.+||.|+.||.|.|||..+... ...+.+|..+|.+++|++ ||..|+|+|.|
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~i-----------------ar~lsaH~~pi~sl~WS~-dgr~LltsS~D 86 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRI-----------------ARMLSAHVRPITSLCWSR-DGRKLLTSSRD 86 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccch-----------------hhhhhccccceeEEEecC-CCCEeeeecCC
Confidence 78999996 688999999999999999876531 233458999999999998 78999999999
Q ss_pred CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec----CC-CCCeEEEEEec
Q 013545 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS----GH-RDGIMTVEWST 200 (441)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~----~h-~~~v~~v~fsp 200 (441)
..|++||+..|.++..+.++.++....++|... + .+++.-.+..-.+-++..++- ..|. +. .....+..|.+
T Consensus 87 ~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~-n-~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKR-N-KCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred ceeEEEeccCCCceeEEEccCccceeeeccccC-C-eEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccC
Confidence 999999999999999999999999999998653 2 333334444455555544321 1111 11 11123446889
Q ss_pred CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545 201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280 (441)
Q Consensus 201 ~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (441)
.|++ +++|..-|.+-++|..+.+|...+....
T Consensus 164 ~g~y-IitGtsKGkllv~~a~t~e~vas~rits----------------------------------------------- 195 (405)
T KOG1273|consen 164 RGKY-IITGTSKGKLLVYDAETLECVASFRITS----------------------------------------------- 195 (405)
T ss_pred CCCE-EEEecCcceEEEEecchheeeeeeeech-----------------------------------------------
Confidence 8986 5799999999999998877665442100
Q ss_pred CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC----CCceeee--eeeEEe-ccCcc
Q 013545 281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES----GRNTLVN--FETVRL-QTSKP 353 (441)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~----~~~~~~~--~~~~~~-~~~~~ 353 (441)
...|..+-|+..|..|+..+.|+.||.|+++. ++..... .+...+ ..-.-
T Consensus 196 -----------------------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 196 -----------------------VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred -----------------------heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 12477888999999999999999999999872 1110000 000000 00112
Q ss_pred eEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeecccc-cceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 354 IQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~-~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
..+.++.+|.+++.++. -++.+|.-..|.+++.|.|-+ ....+|.|.|---.++|- +.|+|.+|...
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 35678889998877665 478999999999999999998 568899999988888887 68899999764
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=8.3e-22 Score=188.35 Aligned_cols=238 Identities=21% Similarity=0.398 Sum_probs=188.6
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
...|...|.++.. ...++.+++|+.|-.+-+|.+..... +. .+++|..+|.++.+.. +..+
T Consensus 24 ~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp~~------------i~-----S~~~hespIeSl~f~~-~E~L 84 (825)
T KOG0267|consen 24 FVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKPNA------------IT-----SLTGHESPIESLTFDT-SERL 84 (825)
T ss_pred hhhhhhhhceeee-eccceeeccCCCceeeccccccCCch------------hh-----eeeccCCcceeeecCc-chhh
Confidence 4579999999998 45688999999999999998764321 11 1468999999999976 4568
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~ 197 (441)
|++|+.||+||+||++.++.++++.+ ...+.++.|+|... +.|+|+.|..+++||++...+...+.+|...|.+++
T Consensus 85 laagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~---~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE---FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred hcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE---EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999998887765543 23456777888653 679999999999999998788899999999999999
Q ss_pred EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 277 (441)
Q Consensus 198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
|+|+|+| +++++.|.+++|||.+.++....
T Consensus 162 lsP~Gr~-v~~g~ed~tvki~d~~agk~~~e------------------------------------------------- 191 (825)
T KOG0267|consen 162 LSPDGRW-VASGGEDNTVKIWDLTAGKLSKE------------------------------------------------- 191 (825)
T ss_pred ecCCCce-eeccCCcceeeeecccccccccc-------------------------------------------------
Confidence 9999986 68999999999999876532211
Q ss_pred cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545 278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA 357 (441)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (441)
+..|.+.+.++.|+|..-++++||.|+++++||+++-. .+.........+....
T Consensus 192 ----------------------f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe----~I~s~~~~~~~v~~~~ 245 (825)
T KOG0267|consen 192 ----------------------FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE----VISSGKPETDGVRSLA 245 (825)
T ss_pred ----------------------cccccccccccccCchhhhhccCCCCceeeeeccceeE----EeeccCCccCCceeee
Confidence 24578889999999999999999999999999998522 1112222245667788
Q ss_pred eeCCCcEEEEeCCCceE
Q 013545 358 TTQDPAVVFVPCMTAVK 374 (441)
Q Consensus 358 ~~~~~~~~~~~~~~~~~ 374 (441)
+.++++.+..+....++
T Consensus 246 fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 246 FNPDGKIVLSGEQISLS 262 (825)
T ss_pred ecCCceeeecCchhhhh
Confidence 99999888877655444
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=9.4e-21 Score=168.61 Aligned_cols=172 Identities=22% Similarity=0.445 Sum_probs=142.4
Q ss_pred cceeee--cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEE
Q 013545 34 NYKEIV--SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW 111 (441)
Q Consensus 34 ~~~~~~--~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 111 (441)
++++++ .+|.++=+.|+|||.....|+||.--+.|++|...++. +.++...+.+|+..|-.+.|
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~--------------W~vd~~Pf~gH~~SVEDLqW 265 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS--------------WKVDQRPFTGHTKSVEDLQW 265 (440)
T ss_pred ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc--------------eeecCccccccccchhhhcc
Confidence 345554 58999999999998544458999999999999887643 33445556689999999999
Q ss_pred eeCCCCEEEEEeCCCcEEEEECCCC---eEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC---Cceeee
Q 013545 112 YPVDTGLFVTGSYDHYVKVWDTNCT---RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS---GAISQT 185 (441)
Q Consensus 112 ~~~~~~~l~sgs~D~~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~---~~~~~~ 185 (441)
+|....+|||||-|++|||||++.+ .++.+-.+++.++.+.|.... .+||+|+.||.++||||+. ++++..
T Consensus 266 SptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~---~lLasG~DdGt~~iwDLR~~~~~~pVA~ 342 (440)
T KOG0302|consen 266 SPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE---PLLASGGDDGTLSIWDLRQFKSGQPVAT 342 (440)
T ss_pred CCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc---ceeeecCCCceEEEEEhhhccCCCccee
Confidence 9988899999999999999999987 455554566777777776543 3899999999999999965 567789
Q ss_pred ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545 186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~ 222 (441)
++-|..+|++|.|+|....+|+++|.|..|.|||+..
T Consensus 343 fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 343 FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 9999999999999998877889999999999999863
No 135
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.5e-20 Score=170.60 Aligned_cols=164 Identities=23% Similarity=0.341 Sum_probs=140.6
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
..+|+.+|-+|.++......|||||.|.||++||+.++... +....|.+.|.++.|+|....+
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~-----------------~s~~~~~k~Vq~l~wh~~~p~~ 301 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK-----------------SSITHHGKKVQTLEWHPYEPSV 301 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc-----------------eehhhcCCceeEEEecCCCceE
Confidence 34799999999998766678999999999999999987642 1122588899999999999999
Q ss_pred EEEEeCCCcEEEEECCCCe-EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCeEEE
Q 013545 119 FVTGSYDHYVKVWDTNCTR-VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTV 196 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v~~v 196 (441)
|++||.|++|++.|++... .-..++..+.+-.+.+.+... ..+.+++.||.++-+|++.. +++.+++.|.++|.++
T Consensus 302 LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se--~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl 379 (463)
T KOG0270|consen 302 LLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE--NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGL 379 (463)
T ss_pred EEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc--eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceE
Confidence 9999999999999998533 234567778888899988754 46778899999999999875 8999999999999999
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcC
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
.+++.-+.+++|+|.|++|++|++.
T Consensus 380 ~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 380 SVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred EecCCCCcceeeccccceEEEEeec
Confidence 9999988899999999999999975
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=9.3e-19 Score=166.68 Aligned_cols=283 Identities=18% Similarity=0.338 Sum_probs=205.8
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcc-cceeEEEEeeCCCCEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGLFVT 121 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~l~s 121 (441)
..+|.+|+|+- ..+.||.+-.||.|.|||+..+-..+ . ..+||+ ..|..++|. ++.+|+|
T Consensus 25 Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~---------~-------vi~g~~drsIE~L~W~--e~~RLFS 85 (691)
T KOG2048|consen 25 PSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLE---------P-------VIHGPEDRSIESLAWA--EGGRLFS 85 (691)
T ss_pred ccceEEEEEec-cCCceeeeccCCcEEEEccCCCceee---------E-------EEecCCCCceeeEEEc--cCCeEEe
Confidence 47899999995 56679999999999999997543211 1 122333 457788887 4679999
Q ss_pred EeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee--eeecCCCCCeEEEEE
Q 013545 122 GSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS--QTLSGHRDGIMTVEW 198 (441)
Q Consensus 122 gs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~--~~l~~h~~~v~~v~f 198 (441)
.+.+|+|.-||+.+.+.+..+.. .+.+.+++.+|-. ..++.|+.||.+..++...++.. ..|.-.++.|.+++|
T Consensus 86 ~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~---~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw 162 (691)
T KOG2048|consen 86 SGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN---TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW 162 (691)
T ss_pred ecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc---ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEe
Confidence 99999999999999998877765 4567888888743 57899999998888888887654 345567899999999
Q ss_pred ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccc
Q 013545 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR 278 (441)
Q Consensus 199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (441)
+|++.. +++|+.||.|++||..++..+..........
T Consensus 163 ~~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l------------------------------------------ 199 (691)
T KOG2048|consen 163 NPTGTK-IAGGSIDGVIRIWDVKSGQTLHIITMQLDRL------------------------------------------ 199 (691)
T ss_pred cCCccE-EEecccCceEEEEEcCCCceEEEeeeccccc------------------------------------------
Confidence 999874 6899999999999998764332111100000
Q ss_pred ccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEe
Q 013545 279 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT 358 (441)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (441)
......-|.+|.|-.|+ .||+|..-|+|++||...+... .....+.....+++.
T Consensus 200 ---------------------~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLi----qS~~~h~adVl~Lav 253 (691)
T KOG2048|consen 200 ---------------------SKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLI----QSHSCHDADVLALAV 253 (691)
T ss_pred ---------------------ccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchh----hhhhhhhcceeEEEE
Confidence 00112348888888665 7889999999999999876532 122334455677888
Q ss_pred eCCCcEEEEeCC-CceEEEEccCCc----eEeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545 359 TQDPAVVFVPCM-TAVKAFDIWSGK----TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418 (441)
Q Consensus 359 ~~~~~~~~~~~~-~~~~~wd~~~~~----~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW 418 (441)
.++...+++++. ..+-.+...+++ ......+|...|.+++..++ .|++||.|.++-+=
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence 888788887765 455555544332 23445678888999999987 88999999887553
No 137
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.6e-20 Score=160.38 Aligned_cols=219 Identities=18% Similarity=0.312 Sum_probs=156.6
Q ss_pred cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
.++||+++|++++|++ ||+.|||++.|++||+||+++... ..+ ..++
T Consensus 81 ~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~------~eH----------------------r~~R---- 127 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFEN------KEH----------------------RCIR---- 127 (420)
T ss_pred hhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhh------hhh----------------------hHhh----
Confidence 4579999999999987 899999999999999999875221 000 0000
Q ss_pred CCCceeeee-cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545 178 ASGAISQTL-SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256 (441)
Q Consensus 178 ~~~~~~~~l-~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (441)
..+ -+| .+.|.|.||.+.+++++....++++|-+...+. ++.+....
T Consensus 128 ------~nve~dh---pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d-----------G~~~~~~v------------ 175 (420)
T KOG2096|consen 128 ------QNVEYDH---PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD-----------GSGSHHFV------------ 175 (420)
T ss_pred ------ccccCCC---ceEEEECCCcceEEEEEccCCEEEEEEeeeccc-----------CCCCcccc------------
Confidence 011 123 478999999888888888888999997643210 00000000
Q ss_pred CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
.++. .-....|...+..+-...++.+|+|++.|..|.+|++. |
T Consensus 176 ---------------------------~~D~---------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G 218 (420)
T KOG2096|consen 176 ---------------------------HIDN---------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G 218 (420)
T ss_pred ---------------------------cccc---------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C
Confidence 0000 00123466677788888899999999999999999998 5
Q ss_pred CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEc---cCCc-----eEeeecccccceEEEEEcCCCCeEE
Q 013545 337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDI---WSGK-----TCLTFRGHYEYVNCCCFSSQDQELY 407 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~---~~~~-----~~~~l~gh~~~v~~v~fspd~~~l~ 407 (441)
+. +..+...+......+.+|+|..+++.+. -.|++|.+ ..|. .+-.|.||...|..++|||+.+.++
T Consensus 219 q~----L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 219 QL----LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV 294 (420)
T ss_pred ce----eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence 43 2333334445556789999999888776 47999986 2232 3447899999999999999999999
Q ss_pred EeecCCcEEEeCCCC
Q 013545 408 TGGNDRQILVWCPSR 422 (441)
Q Consensus 408 s~s~D~~i~vW~~~~ 422 (441)
|.|.||++||||.+-
T Consensus 295 tvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTDV 309 (420)
T ss_pred EEecCCcEEEeeccc
Confidence 999999999999863
No 138
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.3e-19 Score=167.35 Aligned_cols=285 Identities=16% Similarity=0.280 Sum_probs=182.3
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
..++.||++.|.+|..+| .|.+|+|||.||++|||.+.++.+.. .+ .-.+.|.|++|.|..
T Consensus 393 ~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr------------~~------~~d~~I~~vaw~P~~ 453 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVR------------TV------QFDSEIRSVAWNPLS 453 (733)
T ss_pred eeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEE------------EE------eecceeEEEEecCCC
Confidence 346789999999999997 57899999999999999999887532 00 011245666665532
Q ss_pred C-CEEEEEeCCCcEEEEECCCC------------------------------------e--EEEEEecCCeeEEEeeccC
Q 013545 116 T-GLFVTGSYDHYVKVWDTNCT------------------------------------R--VVMNFKMPGKVYRTAMSPL 156 (441)
Q Consensus 116 ~-~~l~sgs~D~~i~iWd~~~~------------------------------------~--~~~~~~~~~~~~~~~~~~~ 156 (441)
. .+||.+ ....+.|-+..-| + +...+++...+.++.++..
T Consensus 454 ~~~vLAvA-~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 454 DLCVLAVA-VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred CceeEEEE-ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 2 222222 2222333332211 0 1223444555666666664
Q ss_pred CCCccEEEEEeC---CCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCC
Q 013545 157 AASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQ 233 (441)
Q Consensus 157 ~~~~~~las~s~---d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~ 233 (441)
+ .+||+... +..|.|++|.....+..|+--.+.|.++.|+|...++|++ .-..|||||+-.+..+..+
T Consensus 533 G---DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa--Tq~~vRiYdL~kqelvKkL---- 603 (733)
T KOG0650|consen 533 G---DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA--TQRSVRIYDLSKQELVKKL---- 603 (733)
T ss_pred C---ceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE--eccceEEEehhHHHHHHHH----
Confidence 3 36666544 3478899998776666666667889999999998876654 3578999998643211100
Q ss_pred ccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc
Q 013545 234 SQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT 313 (441)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 313 (441)
......|.+++++
T Consensus 604 -------------------------------------------------------------------~tg~kwiS~msih 616 (733)
T KOG0650|consen 604 -------------------------------------------------------------------LTGSKWISSMSIH 616 (733)
T ss_pred -------------------------------------------------------------------hcCCeeeeeeeec
Confidence 0112358889999
Q ss_pred cCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEE------ccCC---ce
Q 013545 314 EDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFD------IWSG---KT 383 (441)
Q Consensus 314 ~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd------~~~~---~~ 383 (441)
|.|.-|+.|+.|+.+..+|+.-... .+.+++.+......+++.+.--++.++.. +++.++. +... -.
T Consensus 617 p~GDnli~gs~d~k~~WfDldlssk---Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP 693 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSK---PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP 693 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcc---hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence 9999999999999999999875421 12222222222223333333333333332 3333332 1111 24
Q ss_pred Eeeecccccc----eEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 384 CLTFRGHYEY----VNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 384 ~~~l~gh~~~----v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
++.|+||... |.++.|+|..-||+|+|+|++||+|.
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 5689999876 99999999999999999999999995
No 139
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.4e-20 Score=166.80 Aligned_cols=250 Identities=20% Similarity=0.277 Sum_probs=183.7
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
+.||.++|.|++-+|..-..+|||+.||.|+|||+.+..++..+.. .|.+..+.+.. .-+.++++|.+|+.|-+
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-----~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-----TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-----cceEEecCCcceeeeec
Confidence 3699999999998885546799999999999999999888888875 46788777775 24667889999999998
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
+. .+++++.+ ...+..+.-+..+. .++|||. .|-|||......++.+.
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~~Pv~sms--------------------------- 184 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRDNPVSSMS--------------------------- 184 (433)
T ss_pred cC-Ccceeeec-cccccccccccccc-cccccCc--eeeecccccCCccceee---------------------------
Confidence 65 46666654 34456666655444 5889886 59999986432221110
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeecCCcEEEeeCCCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~ 336 (441)
=-.+.|.++.|+|.-.. |++++.|+.|.+||+...
T Consensus 185 --------------------------------------------wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~ 220 (433)
T KOG0268|consen 185 --------------------------------------------WGADSISSVKFNPVETSILASCASDRSIVLYDLRQA 220 (433)
T ss_pred --------------------------------------------cCCCceeEEecCCCcchheeeeccCCceEEEecccC
Confidence 01245889999998765 566779999999999987
Q ss_pred CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccC-CceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545 337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWS-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR 413 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~-~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~ 413 (441)
.+..... ....+..++++|. ...|+++. ..+..+|+.. ...+..+.+|...|.+|.|||-|+.++|||-|.
T Consensus 221 ~Pl~KVi-----~~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 221 SPLKKVI-----LTMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred Cccceee-----eeccccceecCcc-ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence 6532211 1234556788884 44555544 3677778755 346778999999999999999999999999999
Q ss_pred cEEEeCCCCCCCCCc-cCCccCC
Q 013545 414 QILVWCPSRHISDGV-DAGPMQD 435 (441)
Q Consensus 414 ~i~vW~~~~~~~~~~-~~~~~~~ 435 (441)
+|||+....+++-.+ --.+||.
T Consensus 295 sIRIf~~~~~~SRdiYhtkRMq~ 317 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDIYHTKRMQH 317 (433)
T ss_pred eEEEeecCCCcchhhhhHhhhhe
Confidence 999999988775433 2345553
No 140
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=2.7e-19 Score=170.96 Aligned_cols=291 Identities=21% Similarity=0.247 Sum_probs=204.0
Q ss_pred eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC----------C
Q 013545 46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV----------D 115 (441)
Q Consensus 46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~----------~ 115 (441)
.-++.|++. ...|..--+|..+.|||+....... .+..+ .-|...|+.+...|- -
T Consensus 327 ~IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvg---------k~~s~-----lyHS~ciW~Ve~~p~nv~~~~~aclp 391 (1080)
T KOG1408|consen 327 AIACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVG---------KCSSM-----LYHSACIWDVENLPCNVHSPTAACLP 391 (1080)
T ss_pred eeEEEecCC-CceEEEEEcCceEEEEecccccccc---------ceeee-----eeccceeeeeccccccccCcccccCC
Confidence 336778865 4579999999999999997654321 01100 124444554433320 0
Q ss_pred CCEEEEEeCCCcEEEEECCCCe---EEEE---------Ee------------------------cC--CeeEEEeeccCC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTR---VVMN---------FK------------------------MP--GKVYRTAMSPLA 157 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~---~~~~---------~~------------------------~~--~~~~~~~~~~~~ 157 (441)
..-|.|||.|+|||+||+..+. ..+. +. +. -.+.+++++|++
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence 1248999999999999987521 1100 00 00 124567777754
Q ss_pred CCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC--CCcEEEEeecCCcEEEEEcCCCceeeEeccCCcc
Q 013545 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS--SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ 235 (441)
Q Consensus 158 ~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~--~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~ 235 (441)
..||+|.--|.++||+|..-++...+..|..+|.|+.|+.. +..+|||+|.|.-|.+||+...-
T Consensus 472 ---qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny----------- 537 (1080)
T KOG1408|consen 472 ---QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY----------- 537 (1080)
T ss_pred ---ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-----------
Confidence 47999988899999999999888889999999999999864 23479999999999999986320
Q ss_pred ccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC
Q 013545 236 LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED 315 (441)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 315 (441)
.....+-+|...|++|.|-.+
T Consensus 538 -----------------------------------------------------------~l~qtld~HSssITsvKFa~~ 558 (1080)
T KOG1408|consen 538 -----------------------------------------------------------DLVQTLDGHSSSITSVKFACN 558 (1080)
T ss_pred -----------------------------------------------------------chhhhhcccccceeEEEEeec
Confidence 001123468899999999988
Q ss_pred C--CEEEEeecCCcEEEeeCCCC-CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeec---
Q 013545 316 G--MYLLSAGSDSRIRLWDVESG-RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFR--- 388 (441)
Q Consensus 316 g--~~l~sgs~D~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~--- 388 (441)
| ..+++.++|+.|.+--..+. ...+..-++..........+++.|...+++++|. ..+++|++.+|+..+.|+
T Consensus 559 gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~ 638 (1080)
T KOG1408|consen 559 GLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR 638 (1080)
T ss_pred CCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc
Confidence 8 78999999998765433211 1111111111112222334667788888888887 589999999999998885
Q ss_pred ccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 389 GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 389 gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
+|++..--|...|.|-||||...|+++.++|..++.
T Consensus 639 ~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 639 DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred cCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence 567778889999999999999999999999988765
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.3e-20 Score=178.00 Aligned_cols=161 Identities=17% Similarity=0.358 Sum_probs=128.6
Q ss_pred ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~ 124 (441)
.+..+.|.....++|||++..|.|-+||+...-. .+.+ +.+..|+-.|.++.|++....+|+|||.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r---------nk~l-----~~f~EH~Rs~~~ldfh~tep~iliSGSQ 154 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR---------NKLL-----TVFNEHERSANKLDFHSTEPNILISGSQ 154 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcccc---------chhh-----hHhhhhccceeeeeeccCCccEEEecCC
Confidence 3444556544467899999999999999975210 0111 2345799999999999988899999999
Q ss_pred CCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeeecCCCCCeEEEEEecCC
Q 013545 125 DHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMTVEWSTSS 202 (441)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~h~~~v~~v~fsp~~ 202 (441)
|++||+||++...-..++.. ...++++.|+|.. ...++++...|.+++||++... +...+..|.++|.|+.|+|++
T Consensus 155 Dg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~--~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr 232 (839)
T KOG0269|consen 155 DGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY--GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR 232 (839)
T ss_pred CceEEEEeeecccccccccccchhhhceeeccCC--CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC
Confidence 99999999987766555543 3458889999864 4689999999999999998764 456788999999999999987
Q ss_pred CcEEEEeecCCcEEEEEcCC
Q 013545 203 EWILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 203 ~~~l~s~s~Dg~I~iWD~~~ 222 (441)
. +|||||.|++|+|||+..
T Consensus 233 ~-~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 233 E-WLATGGRDKMVKIWDMTD 251 (839)
T ss_pred c-eeeecCCCccEEEEeccC
Confidence 6 589999999999999874
No 142
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=6.3e-20 Score=168.78 Aligned_cols=242 Identities=19% Similarity=0.272 Sum_probs=179.8
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC---eEEEEEec---CCeeEEEeeccCCCCccEEEEEeCCCcEEE
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT---RVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQVRL 174 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~las~s~d~~I~v 174 (441)
.|..-|.++.++. ...++.|||. +.|||||+... .++.++.+ ...++++.+.+++. .|++|+.-.++.|
T Consensus 417 ~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr---tLivGGeastlsi 491 (705)
T KOG0639|consen 417 AHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR---TLIVGGEASTLSI 491 (705)
T ss_pred ccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc---eEEeccccceeee
Confidence 6777777777776 4568888865 78999998642 33444433 23466777777654 5677888889999
Q ss_pred EECCCCce--eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545 175 CDIASGAI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ 252 (441)
Q Consensus 175 wdl~~~~~--~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (441)
|||....+ ...+....-...+++.+||.+ +..+|..||-|+|||+++...++.
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~Vrq------------------------ 546 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQ------------------------ 546 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeec------------------------
Confidence 99987643 233444444567899999988 566788899999999987543332
Q ss_pred cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEee
Q 013545 253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 332 (441)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd 332 (441)
+.+|.+-+.+|++++||..|-||+.|.+||.||
T Consensus 547 -----------------------------------------------fqGhtDGascIdis~dGtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 547 -----------------------------------------------FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWD 579 (705)
T ss_pred -----------------------------------------------ccCCCCCceeEEecCCCceeecCCCccceeehh
Confidence 357888899999999999999999999999999
Q ss_pred CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec
Q 013545 333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 411 (441)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~ 411 (441)
++.++.... +. -.+.+..+-.+|.+..++++.. +.+.+... ++...+.+.-|+..|.++.|++-|+|++|.|.
T Consensus 580 lregrqlqq--hd---F~SQIfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 580 LREGRQLQQ--HD---FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred hhhhhhhhh--hh---hhhhheecccCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCceeeecCc
Confidence 998764321 11 1234556677888888877754 45555544 44555677889999999999999999999999
Q ss_pred CCcEEEeCCCCCCC
Q 013545 412 DRQILVWCPSRHIS 425 (441)
Q Consensus 412 D~~i~vW~~~~~~~ 425 (441)
|..+-.|..+-+.+
T Consensus 654 DnlLnawrtPyGas 667 (705)
T KOG0639|consen 654 DNLLNAWRTPYGAS 667 (705)
T ss_pred hhhhhhccCccccc
Confidence 99999998876554
No 143
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.5e-19 Score=150.95 Aligned_cols=216 Identities=19% Similarity=0.292 Sum_probs=157.1
Q ss_pred eeeecCCCCceeEEEcc-CCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 36 KEIVSPHKGSINSLQVD-LTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s-~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
...++||.++|+.++|. |.-|.+|||+|.||.|.||.-+.+. ... ......|...|++++|-|.
T Consensus 49 l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~-w~k--------------~~e~~~h~~SVNsV~waph 113 (299)
T KOG1332|consen 49 LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR-WTK--------------AYEHAAHSASVNSVAWAPH 113 (299)
T ss_pred eeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc-hhh--------------hhhhhhhcccceeeccccc
Confidence 34578999999999985 5568899999999999999977653 110 0112379999999999876
Q ss_pred C-CCEEEEEeCCCcEEEEECCCC-e-EEEEE--ecCCeeEEEeeccCCCC-----------ccEEEEEeCCCcEEEEECC
Q 013545 115 D-TGLFVTGSYDHYVKVWDTNCT-R-VVMNF--KMPGKVYRTAMSPLAAS-----------HMLIAAGTEDVQVRLCDIA 178 (441)
Q Consensus 115 ~-~~~l~sgs~D~~i~iWd~~~~-~-~~~~~--~~~~~~~~~~~~~~~~~-----------~~~las~s~d~~I~vwdl~ 178 (441)
+ |-.||+++.||+|.+.+.... . ....+ -+.-.+.++++.|-... ...|++|+.|+.|+||+..
T Consensus 114 eygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~ 193 (299)
T KOG1332|consen 114 EYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD 193 (299)
T ss_pred ccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence 5 567899999999999987643 1 11111 12233566666654211 2469999999999999998
Q ss_pred CCce--eeeecCCCCCeEEEEEecCC---CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545 179 SGAI--SQTLSGHRDGIMTVEWSTSS---EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN 253 (441)
Q Consensus 179 ~~~~--~~~l~~h~~~v~~v~fsp~~---~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (441)
.+.- -++|.+|.+.|+.++|.|.- +..+||||+||++.||-.+.. ....
T Consensus 194 ~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e--~e~w------------------------ 247 (299)
T KOG1332|consen 194 SDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE--YEPW------------------------ 247 (299)
T ss_pred CcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc--cCcc------------------------
Confidence 8743 35689999999999999974 346899999999999975411 0000
Q ss_pred CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeC
Q 013545 254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 333 (441)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~ 333 (441)
.. ..+......+..+.||+.|..|+.++.|..|.+|--
T Consensus 248 --------------------------------k~----------tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 248 --------------------------------KK----------TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred --------------------------------cc----------cccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 00 001123467899999999999999999999999954
Q ss_pred C
Q 013545 334 E 334 (441)
Q Consensus 334 ~ 334 (441)
.
T Consensus 286 ~ 286 (299)
T KOG1332|consen 286 N 286 (299)
T ss_pred C
Confidence 3
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.6e-19 Score=165.91 Aligned_cols=197 Identities=18% Similarity=0.259 Sum_probs=157.7
Q ss_pred ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~ 124 (441)
.|.++.++ .|+++|+..++|+|||++.-.. .+..++|+..|+++.+... ..++|+++.
T Consensus 84 Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~kl~-----------------hr~lkdh~stvt~v~YN~~-DeyiAsvs~ 141 (673)
T KOG4378|consen 84 CVACASQS----LYEISGGQSGCVKIWDLRAKLI-----------------HRFLKDHQSTVTYVDYNNT-DEYIASVSD 141 (673)
T ss_pred HHhhhhcc----eeeeccCcCceeeehhhHHHHH-----------------hhhccCCcceeEEEEecCC-cceeEEecc
Confidence 44455444 6999999999999999972211 1334689999999999764 569999999
Q ss_pred CCcEEEEECCCCeEEEEEecC-Ce-eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee-ecCCCCCeEEEEEecC
Q 013545 125 DHYVKVWDTNCTRVVMNFKMP-GK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSGHRDGIMTVEWSTS 201 (441)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~-l~~h~~~v~~v~fsp~ 201 (441)
-|-|.|..+.++.....+.++ +. +.-+.+++.. ..+|.+++.+|.|.+||+....++.. ...|..+...|.|+|.
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk--r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK--RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPS 219 (673)
T ss_pred CCcEEEEecccCccccceecCCCCeEEEeeccccc--ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCC
Confidence 999999999999888888875 44 3355667653 46899999999999999988776654 4579999999999999
Q ss_pred CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
++.+|+|.+.|+.|.+||++..+....
T Consensus 220 ne~l~vsVG~Dkki~~yD~~s~~s~~~----------------------------------------------------- 246 (673)
T KOG4378|consen 220 NEALLVSVGYDKKINIYDIRSQASTDR----------------------------------------------------- 246 (673)
T ss_pred ccceEEEecccceEEEeecccccccce-----------------------------------------------------
Confidence 999999999999999999985421111
Q ss_pred CCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
.....+..+|+|+++|.+|++|+..|.|..||++..+
T Consensus 247 -------------------l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 247 -------------------LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred -------------------eeecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 1123467899999999999999999999999998655
No 145
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=2.6e-19 Score=169.27 Aligned_cols=293 Identities=19% Similarity=0.264 Sum_probs=184.4
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
..|..+|..+.+-| +...|++++.|.+|+.||++..+... .....||.+.|.+++|.+.+...|
T Consensus 97 ~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G---------------~~~~~GH~~SvkS~cf~~~n~~vF 160 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVG---------------GRLNLGHTGSVKSECFMPTNPAVF 160 (720)
T ss_pred ccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeec---------------ceeecccccccchhhhccCCCcce
Confidence 36999999999987 56689999999999999998654310 112348999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCeE--------------------E-------EEEec-CCeeEE-EeeccCCCCccEEEEEeC-C
Q 013545 120 VTGSYDHYVKVWDTNCTRV--------------------V-------MNFKM-PGKVYR-TAMSPLAASHMLIAAGTE-D 169 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~--------------------~-------~~~~~-~~~~~~-~~~~~~~~~~~~las~s~-d 169 (441)
++|+.|+.|.|||++.... . ...+. .+.+.+ +.... ..++..||+++. |
T Consensus 161 ~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~-fkDe~tlaSaga~D 239 (720)
T KOG0321|consen 161 CTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL-FKDESTLASAGAAD 239 (720)
T ss_pred eeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE-EeccceeeeccCCC
Confidence 9999999999999753220 0 00000 011111 11111 123456777776 9
Q ss_pred CcEEEEECCCCceeee--------ecCC---CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccC
Q 013545 170 VQVRLCDIASGAISQT--------LSGH---RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR 238 (441)
Q Consensus 170 ~~I~vwdl~~~~~~~~--------l~~h---~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~ 238 (441)
+.|+||||........ +.-| .-.+.++.....|.+++|+|. |++|.+||+++...-.+.
T Consensus 240 ~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~--------- 309 (720)
T KOG0321|consen 240 STIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVA--------- 309 (720)
T ss_pred cceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchh---------
Confidence 9999999987643221 2223 234566766667788888876 999999999853210000
Q ss_pred CCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE
Q 013545 239 RPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY 318 (441)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 318 (441)
.+ .+... ..-...=..+||+.+
T Consensus 310 ---------------------------------------~~--sg~~~-----------------~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 310 ---------------------------------------EF--SGKLN-----------------SSFYVKSELSPDDCS 331 (720)
T ss_pred ---------------------------------------hc--cCccc-----------------ceeeeeeecCCCCce
Confidence 00 00000 000112247899999
Q ss_pred EEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeC--CCcEEEEeCCCceEEEEccCCce-------------
Q 013545 319 LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ--DPAVVFVPCMTAVKAFDIWSGKT------------- 383 (441)
Q Consensus 319 l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~wd~~~~~~------------- 383 (441)
+++|+.|...++|.+.+.......+ ..+.-....+.+.+ ....+...-+.++++|++.++-.
T Consensus 332 l~SgSsd~~ayiw~vs~~e~~~~~l---~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~ 408 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPEAPPALL---LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYE 408 (720)
T ss_pred EeccCCCcceeeeeecCccCChhhh---hCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhh
Confidence 9999999999999998765322111 11111112233333 33333332336899999866421
Q ss_pred -EeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545 384 -CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 384 -~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~ 422 (441)
...|.+|...+..+.++..+.+.... -+..|+|.-+.
T Consensus 409 ~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP~ 446 (720)
T KOG0321|consen 409 YSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSPV 446 (720)
T ss_pred hhhhhhccccccccccccccccccchh--hhccccccCcc
Confidence 23567888888888887766555444 66678887664
No 146
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=3.2e-19 Score=173.29 Aligned_cols=197 Identities=19% Similarity=0.353 Sum_probs=160.7
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
..+++++.++ -|++.+-|+..|+|-+||.+.+-.- .. ......|+.+|..++... -+..++|++
T Consensus 449 ~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r----------~s----f~~~~ah~~~V~gla~D~-~n~~~vsa~ 512 (910)
T KOG1539|consen 449 INATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHR----------KS----FGDSPAHKGEVTGLAVDG-TNRLLVSAG 512 (910)
T ss_pred cceEEEEEec-cCceEEEeccCCeEEEEEcccCeee----------cc----cccCccccCceeEEEecC-CCceEEEcc
Confidence 7899999985 5889999999999999999876421 00 011247999999998865 356899999
Q ss_pred CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCC
Q 013545 124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE 203 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~ 203 (441)
.||-+++||.+....+.++.....+.....+.. ..++|.+..|..|+++|..|.+.++.|.||.+.|+..+|||+|+
T Consensus 513 ~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~---s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr 589 (910)
T KOG1539|consen 513 ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRV---SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR 589 (910)
T ss_pred CcceEEEEecCCcceeeeeccCCCcceeeeeeh---hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence 999999999998888877777665555554443 24788888999999999999999999999999999999999999
Q ss_pred cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCC
Q 013545 204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG 283 (441)
Q Consensus 204 ~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (441)
| |++++.|++||+||+.++.++..+-
T Consensus 590 W-lisasmD~tIr~wDlpt~~lID~~~----------------------------------------------------- 615 (910)
T KOG1539|consen 590 W-LISASMDSTIRTWDLPTGTLIDGLL----------------------------------------------------- 615 (910)
T ss_pred E-EEEeecCCcEEEEeccCcceeeeEe-----------------------------------------------------
Confidence 8 5899999999999998876543320
Q ss_pred CcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC-CcEEEee
Q 013545 284 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD-SRIRLWD 332 (441)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D-~~i~~wd 332 (441)
-..+.++|.|||+|.+|||...| .-|++|.
T Consensus 616 -------------------vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 616 -------------------VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred -------------------cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 12457789999999999999888 5699995
No 147
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=148.64 Aligned_cols=299 Identities=16% Similarity=0.231 Sum_probs=197.6
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeeccccc-CcccceeEEEEeeCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH-GHKYAISSAIWYPVDT 116 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~~~~~ 116 (441)
+++||.+.|+++.|.. ++ +|.+|..-|-+.+|++++..... +.. .|+..|+.+...| +
T Consensus 9 vLRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~r~~~-----------------~~r~~g~~~it~lq~~p--~ 67 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTERDLP-----------------LIRLFGRLFITNLQSIP--N 67 (323)
T ss_pred Eeccccchheehhhcc-ch-hhhcccccceEEEEEeecCccch-----------------hhhhhccceeeceeecC--C
Confidence 4669999999999973 44 69999999999999998765321 112 3555666666665 3
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccC-----CCCc-cEEEEEeCCC-cEEEEECCCCceeeee---
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL-----AASH-MLIAAGTEDV-QVRLCDIASGAISQTL--- 186 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~las~s~d~-~I~vwdl~~~~~~~~l--- 186 (441)
+.+.|-+.|.++.+|++.-...+...... +..+.|.++ .... .+++.-+... .+++-|......++..
T Consensus 68 d~l~tqgRd~~L~lw~ia~s~~i~i~Si~--~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~ 145 (323)
T KOG0322|consen 68 DSLDTQGRDPLLILWTIAYSAFISIHSIV--VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDS 145 (323)
T ss_pred cchhhcCCCceEEEEEccCcceEEEeeee--ccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCch
Confidence 67999999999999999765544322211 222223222 1111 2222211110 1222222211111111
Q ss_pred -cCCCCCeEEEEEecC-C-CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545 187 -SGHRDGIMTVEWSTS-S-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK 263 (441)
Q Consensus 187 -~~h~~~v~~v~fsp~-~-~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (441)
.+-.+.++|..+.-. + ..+|+.|-++|.+-+||+.++..+-.+...
T Consensus 146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~------------------------------- 194 (323)
T KOG0322|consen 146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQS------------------------------- 194 (323)
T ss_pred hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccc-------------------------------
Confidence 234566777764322 2 346777889999999999875221111000
Q ss_pred ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee
Q 013545 264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF 343 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~ 343 (441)
..+ .-....|..+|++|.+.+--..=++|+.+..+..|++.........-
T Consensus 195 -------------------~kv-----------~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 195 -------------------SKV-----------ESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred -------------------ccc-----------ccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 000 00124688899999999877777889999999999987542222222
Q ss_pred eeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 344 ETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
....+...+...+.+.+|++++++++. ..+|+|.-.+...+..|.-|.+.|++++|+||...+|+||.|+.|-+|++
T Consensus 245 ~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 233444455566788999999999887 58999999999999999999999999999999999999999999999986
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=1.3e-17 Score=146.43 Aligned_cols=168 Identities=20% Similarity=0.380 Sum_probs=134.0
Q ss_pred cccCcccceeEEEEeeC----CCCEEEEEeCCCcEEEEECCCCe---EEEEEe---cCCeeEEEeeccCCC-CccEEEEE
Q 013545 98 HEHGHKYAISSAIWYPV----DTGLFVTGSYDHYVKVWDTNCTR---VVMNFK---MPGKVYRTAMSPLAA-SHMLIAAG 166 (441)
Q Consensus 98 ~~~~h~~~V~~~~~~~~----~~~~l~sgs~D~~i~iWd~~~~~---~~~~~~---~~~~~~~~~~~~~~~-~~~~las~ 166 (441)
....|+.+|..+.|.+. .-+.+||.|.+ ++.++.....- .++.+. .+...+.++++-+.. ++.++|+|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 34578888888887532 23466776664 78888764332 222222 234466777776655 47789999
Q ss_pred eCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccc
Q 013545 167 TEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK 246 (441)
Q Consensus 167 s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (441)
+.-|.|+|.|+.++++...+.+|...|..+.|+|....+++|+|.|.+||+|++++..|+.++..
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG--------------- 176 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG--------------- 176 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc---------------
Confidence 99999999999999999999999999999999999888899999999999999999988876621
Q ss_pred ccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC
Q 013545 247 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS 326 (441)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~ 326 (441)
..+|-+.|.+++|+++|.+|+|++-|-
T Consensus 177 -----------------------------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDh 203 (385)
T KOG1034|consen 177 -----------------------------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDH 203 (385)
T ss_pred -----------------------------------------------------cccccCcEEEEEEcCCCCeeeccCCcc
Confidence 247889999999999999999999999
Q ss_pred cEEEeeCC
Q 013545 327 RIRLWDVE 334 (441)
Q Consensus 327 ~i~~wd~~ 334 (441)
+|++|++.
T Consensus 204 slk~W~l~ 211 (385)
T KOG1034|consen 204 SLKLWRLN 211 (385)
T ss_pred eEEEEecC
Confidence 99999987
No 149
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=3.7e-18 Score=147.20 Aligned_cols=289 Identities=20% Similarity=0.297 Sum_probs=189.0
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCC-------CcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeE
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASD-------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISS 108 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~D-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 108 (441)
.+++.-|.++|+.|+-+|.+.+.|+|+-+| -.+.||.+........ ..+...+...+ ..+-+.|.|
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~---~~tlE~v~~Ld----teavg~i~c 128 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN---SSTLECVASLD----TEAVGKINC 128 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc---cchhhHhhcCC----HHHhCceee
Confidence 445566889999999999888888887764 2367998864332100 00011111111 134457899
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEECCCCeE-EEEEec------CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc
Q 013545 109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRV-VMNFKM------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA 181 (441)
Q Consensus 109 ~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~ 181 (441)
+.|.| +++.+|+-. |..|.+|++..... ...... .....+-.++|....+. +++ ..|+++..||++|-+
T Consensus 129 vew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq-v~t-t~d~tl~~~D~RT~~ 204 (370)
T KOG1007|consen 129 VEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ-VAT-TSDSTLQFWDLRTMK 204 (370)
T ss_pred EEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce-EEE-eCCCcEEEEEccchh
Confidence 99988 788888764 88999999976654 222221 12234556777655444 443 357899999999887
Q ss_pred eeeeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545 182 ISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA 260 (441)
Q Consensus 182 ~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (441)
....+. .|...|..+.|+|+.+++|+||+.||.|||||+|+-+.
T Consensus 205 ~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~----------------------------------- 249 (370)
T KOG1007|consen 205 KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF----------------------------------- 249 (370)
T ss_pred hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-----------------------------------
Confidence 665554 69999999999999999999999999999999985320
Q ss_pred CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEeecCCcEEEeeCCCCCce
Q 013545 261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNT 339 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~~~~~ 339 (441)
....+.+|.-.|.+|.|.|- .++|+|||.|..|.+|...+-...
T Consensus 250 -----------------------------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 250 -----------------------------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred -----------------------------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 00113467888999999997 467889999999999987643211
Q ss_pred e-eeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeE-EEeecCCcEEE
Q 013545 340 L-VNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL-YTGGNDRQILV 417 (441)
Q Consensus 340 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l-~s~s~D~~i~v 417 (441)
. ..+.... .... +. .....++ .--...+.++..|++.|.+++||.-.-++ ||-|-||-+.|
T Consensus 295 ~qi~~~~de--se~e-------~~-----dseer~k---pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 295 QQIEFEDDE--SESE-------DE-----DSEERVK---PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ccccccccc--ccCc-------ch-----hhHHhcc---cccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 1 0000000 0000 00 0000011 00112356788999999999999988885 57799998877
Q ss_pred eCCCC
Q 013545 418 WCPSR 422 (441)
Q Consensus 418 W~~~~ 422 (441)
=.++.
T Consensus 358 s~V~r 362 (370)
T KOG1007|consen 358 SSVPR 362 (370)
T ss_pred ecCCh
Confidence 65543
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2e-17 Score=157.66 Aligned_cols=246 Identities=15% Similarity=0.179 Sum_probs=186.3
Q ss_pred cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeE-EEEEec--CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV-VMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180 (441)
Q Consensus 104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~ 180 (441)
.+|.++++++. ...||.+=.|++|-||+++..=. ...+.. .+.+-.++|++ ...|.|.+.+|.|.-||+.++
T Consensus 26 s~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e----~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 26 SEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE----GGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred cceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc----CCeEEeecCCceEEEEecccC
Confidence 47889999885 55799999999999999976433 233332 34566777773 235777788999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA 260 (441)
Q Consensus 181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (441)
+.+..+....+.|++++.+|.+. .++.|+.||.+.+++...++....
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~-------------------------------- 147 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYK-------------------------------- 147 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEE--------------------------------
Confidence 99999999999999999999987 567888999777776654321100
Q ss_pred CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee
Q 013545 261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 340 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~ 340 (441)
..+.-..+.|.+|+|+|++..|++|+.||.|++||..++....
T Consensus 148 -------------------------------------r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 148 -------------------------------------RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred -------------------------------------eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence 0001123669999999999999999999999999999875321
Q ss_pred eeeeeE---Eecc-Cc--ceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc
Q 013545 341 VNFETV---RLQT-SK--PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ 414 (441)
Q Consensus 341 ~~~~~~---~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~ 414 (441)
..+. ++.. .. ...+.+-.++.++...+.++|+.||...+.+...++.|.+.|.|++.++++.+++++|.|+.
T Consensus 191 --~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ 268 (691)
T KOG2048|consen 191 --IITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK 268 (691)
T ss_pred --EeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc
Confidence 1111 1111 11 12344445666655556789999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCC
Q 013545 415 ILVWCPSRHISD 426 (441)
Q Consensus 415 i~vW~~~~~~~~ 426 (441)
|..+...+++..
T Consensus 269 ii~~~~~~~~~~ 280 (691)
T KOG2048|consen 269 IIQYSLTTNKSE 280 (691)
T ss_pred eEEEEecCCccc
Confidence 999988877664
No 151
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.1e-18 Score=150.96 Aligned_cols=275 Identities=18% Similarity=0.249 Sum_probs=178.6
Q ss_pred cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-CCCEEEEEeCCCcEEEEECCC
Q 013545 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DTGLFVTGSYDHYVKVWDTNC 135 (441)
Q Consensus 57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~~l~sgs~D~~i~iWd~~~ 135 (441)
..+|++-..|+|+|||..++..++ ..++|...++.+.|... ....+.||+.||+||+||++.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~-----------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs 103 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE-----------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRS 103 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh-----------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeec
Confidence 358888899999999988764432 23466666666777554 356789999999999999987
Q ss_pred CeEEEEEecCC----eeEEEeeccCCCCccEEEEEe----CCCcEEEEECCCCce-eee-ecCCCCCeEEEEEecCCCcE
Q 013545 136 TRVVMNFKMPG----KVYRTAMSPLAASHMLIAAGT----EDVQVRLCDIASGAI-SQT-LSGHRDGIMTVEWSTSSEWI 205 (441)
Q Consensus 136 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~las~s----~d~~I~vwdl~~~~~-~~~-l~~h~~~v~~v~fsp~~~~~ 205 (441)
......+.... +..++.... ...+++.|+ .+-.+.+||.+..+. +.. ...|.+.|++|.|+|+++.+
T Consensus 104 ~~e~a~~~~~~~~~~~f~~ld~nc---k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl 180 (376)
T KOG1188|consen 104 QAESARISWTQQSGTPFICLDLNC---KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL 180 (376)
T ss_pred chhhhheeccCCCCCcceEeeccC---cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe
Confidence 66544443221 122222211 345677764 356799999987754 444 45799999999999999999
Q ss_pred EEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCc
Q 013545 206 LVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV 285 (441)
Q Consensus 206 l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (441)
|+|||.||-|.+||+....--. .+
T Consensus 181 LlSGSvDGLvnlfD~~~d~EeD--------------------------------------------------------aL 204 (376)
T KOG1188|consen 181 LLSGSVDGLVNLFDTKKDNEED--------------------------------------------------------AL 204 (376)
T ss_pred EEeecccceEEeeecCCCcchh--------------------------------------------------------hH
Confidence 9999999999999987421000 00
Q ss_pred ccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEec-------cC--cceE
Q 013545 286 RQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ-------TS--KPIQ 355 (441)
Q Consensus 286 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~-------~~--~~~~ 355 (441)
. ....|...|..+.|+.++ +.|.+-+-.++..+|+++.+..... ++..... .. ..+.
T Consensus 205 ~------------~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~-~~~~~~~~~d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 205 L------------HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW-LENPDVSADDLRKEDNCDYVIN 271 (376)
T ss_pred H------------HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc-ccCccchhhhHHhhhhhhheee
Confidence 0 001244568889999876 5688889999999999987653211 1100000 00 0011
Q ss_pred EEeeCCCcEEEEeC--CCceEEEEc---cC---CceEeeecc-cccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 356 LATTQDPAVVFVPC--MTAVKAFDI---WS---GKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 356 ~~~~~~~~~~~~~~--~~~~~~wd~---~~---~~~~~~l~g-h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
.....+.....+++ .+...++-+ .+ +.....|.| |..-|.++.|.-.+..+.|||+||.+++|..
T Consensus 272 ~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 272 EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 11111223333332 244555433 22 334455666 7788899999988999999999999999984
No 152
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=152.60 Aligned_cols=240 Identities=15% Similarity=0.167 Sum_probs=179.4
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
.+.|.+|+-+| .|.||+.|.-.|.|.+|-+.+|..+. ...+|=..|+|+.|+. |+.+|+||
T Consensus 81 Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~-----------------v~~aHYQ~ITcL~fs~-dgs~iiTg 141 (476)
T KOG0646|consen 81 PGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLN-----------------VLSAHYQSITCLKFSD-DGSHIITG 141 (476)
T ss_pred ccceeeeecCC-CceEEEeecccCcEEEEEeccccHHH-----------------HHHhhccceeEEEEeC-CCcEEEec
Confidence 37899999985 57788888799999999999886431 1236777899999886 78999999
Q ss_pred eCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~ 202 (441)
|.|+.|++|++. -++++..|+ +.+++..+.+|+-.|+.+...+.+
T Consensus 142 skDg~V~vW~l~---------------------------~lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 142 SKDGAVLVWLLT---------------------------DLVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred CCCccEEEEEEE---------------------------eecccccCC--------CccceeeeccCcceeEEEEecCCC
Confidence 999999999752 122233333 445677888999999988776542
Q ss_pred -CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 203 -EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 203 -~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
.-.++|+|.|.+||+||+..+..+-.+
T Consensus 187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti---------------------------------------------------- 214 (476)
T KOG0646|consen 187 TNARLYTASEDRTIKLWDLSLGVLLLTI---------------------------------------------------- 214 (476)
T ss_pred ccceEEEecCCceEEEEEeccceeeEEE----------------------------------------------------
Confidence 225789999999999999876433221
Q ss_pred CCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC--ce----------eeeeeeEEec
Q 013545 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR--NT----------LVNFETVRLQ 349 (441)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~--~~----------~~~~~~~~~~ 349 (441)
....++.+++.+|-.+.+..|+.+|.|.+.++.+.. .. ...+.....+
T Consensus 215 --------------------~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh 274 (476)
T KOG0646|consen 215 --------------------TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH 274 (476)
T ss_pred --------------------ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence 113458899999999999999999999998876532 11 0111222223
Q ss_pred cC--cceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEE
Q 013545 350 TS--KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT 408 (441)
Q Consensus 350 ~~--~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s 408 (441)
.+ .+.+++++.|+++++++.. +.+.+||+.+.++++++..-.++|+.+.+.|-.+....
T Consensus 275 ~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 275 ENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred cCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceec
Confidence 33 5678999999999999865 78999999999999999888899999999775444443
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.1e-18 Score=175.38 Aligned_cols=255 Identities=17% Similarity=0.265 Sum_probs=185.3
Q ss_pred CceeEEEccCCCCc---EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545 44 GSINSLQVDLTEER---YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (441)
Q Consensus 44 ~~V~~l~~s~~~~~---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~ 120 (441)
..-+.|+|.+.+.+ .||.|..||.|-+||......-.....+ .+..-|++.|..+.|.+..+++||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l-----------a~~~~h~G~V~gLDfN~~q~nlLA 133 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL-----------ATKSKHTGPVLGLDFNPFQGNLLA 133 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH-----------hhhcccCCceeeeeccccCCceee
Confidence 46778888865433 5999999999999998643110000111 223469999999999998888999
Q ss_pred EEeCCCcEEEEECCCCeEEEEE---ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC--CeEE
Q 013545 121 TGSYDHYVKVWDTNCTRVVMNF---KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD--GIMT 195 (441)
Q Consensus 121 sgs~D~~i~iWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~--~v~~ 195 (441)
||+.|+.|.|||++..+.-... ...+.+..+++.. .-..+|||++.++.+.|||++..+.+-.+..|.. .+..
T Consensus 134 SGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNr--kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 134 SGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNR--KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV 211 (1049)
T ss_pred ccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccch--hhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence 9999999999999764322221 1233455555543 2346899999999999999998887766665554 4678
Q ss_pred EEEecCCCcEEEEeecCC---cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545 196 VEWSTSSEWILVTGGCDG---AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg---~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (441)
++|+|+....++.++.|. .|++||+|...
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~as------------------------------------------------ 243 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFAS------------------------------------------------ 243 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccC------------------------------------------------
Confidence 999999876666776654 69999998421
Q ss_pred ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 351 (441)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~ 351 (441)
.......+|...|.+|.|++.+ .+|+|.+.|++|.+|+.++++.
T Consensus 244 ----------------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv------------- 288 (1049)
T KOG0307|consen 244 ----------------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV------------- 288 (1049)
T ss_pred ----------------------CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE-------------
Confidence 0011235788889999999876 8999999999999999987642
Q ss_pred cceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCC-eEEEeecCCcEEEeCCCCCCCC
Q 013545 352 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~-~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
+.++.....++..+.|.|..- .++.++-||.|.|+.+.+.-.+
T Consensus 289 --------------------------------l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~ 332 (1049)
T KOG0307|consen 289 --------------------------------LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTD 332 (1049)
T ss_pred --------------------------------eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCcc
Confidence 122333457789999999876 5667888999999988765544
No 154
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.6e-18 Score=162.03 Aligned_cols=267 Identities=16% Similarity=0.287 Sum_probs=164.8
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+..|...|..+.|.|.. -.|++++.||+|++|++++...- .+ ....++ .++++|.++|.|+++.+ +++
T Consensus 289 tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~s--~~--~~~epi-----~tfraH~gPVl~v~v~~-n~~ 357 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKKS--AE--KDVEPI-----LTFRAHEGPVLCVVVPS-NGE 357 (577)
T ss_pred eeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCCc--cc--cceeee-----EEEecccCceEEEEecC-Cce
Confidence 355799999999998754 47999999999999999652210 00 111222 34679999999998876 789
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~ 197 (441)
+++|||.|++|+.|++- .. ..|+.. +|. ......+.||.+.|+.++
T Consensus 358 ~~ysgg~Dg~I~~w~~p-~n---------------~dp~ds----------------~dp--~vl~~~l~Ghtdavw~l~ 403 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLP-PN---------------QDPDDS----------------YDP--SVLSGTLLGHTDAVWLLA 403 (577)
T ss_pred EEEeeccCceeeeeccC-CC---------------CCcccc----------------cCc--chhccceeccccceeeee
Confidence 99999999999999763 00 011110 000 112245789999999999
Q ss_pred EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 277 (441)
Q Consensus 198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
+|+... .|++||.||++|+|+...... +++...+
T Consensus 404 ~s~~~~-~Llscs~DgTvr~w~~~~~~~-~~f~~~~-------------------------------------------- 437 (577)
T KOG0642|consen 404 LSSTKD-RLLSCSSDGTVRLWEPTEESP-CTFGEPK-------------------------------------------- 437 (577)
T ss_pred eccccc-ceeeecCCceEEeeccCCcCc-cccCCcc--------------------------------------------
Confidence 999876 478999999999998764321 1110000
Q ss_pred cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe---eCCCCCceeeeeeeE----Eecc
Q 013545 278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW---DVESGRNTLVNFETV----RLQT 350 (441)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w---d~~~~~~~~~~~~~~----~~~~ 350 (441)
..+..++|+|-.....+ ...+.+.+.+ +++..... ..+... ....
T Consensus 438 -------------------------e~g~Plsvd~~ss~~a~--~~~s~~~~~~~~~~~ev~s~~-~~~~s~~~~~~~~~ 489 (577)
T KOG0642|consen 438 -------------------------EHGYPLSVDRTSSRPAH--SLASFRFGYTSIDDMEVVSDL-LIFESSASPGPRRY 489 (577)
T ss_pred -------------------------ccCCcceEeeccchhHh--hhhhcccccccchhhhhhhhe-eeccccCCCccccc
Confidence 00011111211111000 0001111111 11111100 000000 0000
Q ss_pred CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545 351 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~ 423 (441)
.....+...+...+.+.+.. ..++++|..+++.++....|...++++++-|.|-+|++++.|+.+++|.....
T Consensus 490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 11223333444444444433 58999999999999999999999999999999999999999999999988543
No 155
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.2e-17 Score=164.25 Aligned_cols=264 Identities=20% Similarity=0.307 Sum_probs=178.7
Q ss_pred CCceeEEEccC-CCCcEEEEeeCCCcEEEEECC-CCcccCCCCceeccceeEEeecccccC----cccceeEEEEeeCCC
Q 013545 43 KGSINSLQVDL-TEERYLLSGASDSSVAVYDVQ-RATDYEGGGHIAKHRSVFVVDKQHEHG----HKYAISSAIWYPVDT 116 (441)
Q Consensus 43 ~~~V~~l~~s~-~~~~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~~~~~~~~~ 116 (441)
...|+.|.+-. .+..++++|+.||.||||+-. .... +..++.......+ -.+.=.-+.|-. ..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~----------~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~~ 1177 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK----------KPELVTAWSSLSDQLPGARGTGLVVDWQQ-QS 1177 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccC----------CceeEEeeccccccCccCCCCCeeeehhh-hC
Confidence 46899998742 223479999999999999742 2111 1111111111111 111111123443 34
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc---eeeeecCCCCC-
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHRDG- 192 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~---~~~~l~~h~~~- 192 (441)
.+|+++|+-+.|||||++...++..+.........+++++.....++++|..||.|++||.+... .+...+.|...
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence 46777777899999999999888888766544445566655556789999999999999987654 46677889888
Q ss_pred -eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 193 -IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 193 -v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
|..+.+.+.|-.-|+||+.||.|++||+|.......+.
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~----------------------------------------- 1296 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT----------------------------------------- 1296 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCcccccce-----------------------------------------
Confidence 99999998775558999999999999998531000000
Q ss_pred cccCcccccCCCCcccccCCCcccccccceee--cc-CeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH--YG-AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL 348 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~-~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~ 348 (441)
...| .| .+++|..|+....+|+|+. +.|+||++...+.. .++.
T Consensus 1297 ----------------------------iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~-----~~k~ 1342 (1387)
T KOG1517|consen 1297 ----------------------------IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLN-----IIKY 1342 (1387)
T ss_pred ----------------------------eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhc-----cccc
Confidence 0011 13 5899999999999999999 99999998754321 1110
Q ss_pred ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
.+..+ .--.+.+.|++|+|---+||.|+.|.+|.|+..+.++..
T Consensus 1343 ------------n~~F~----------------------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~~ 1386 (1387)
T KOG1517|consen 1343 ------------NPGFM----------------------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRLT 1386 (1387)
T ss_pred ------------Ccccc----------------------cCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCCC
Confidence 00000 001245799999999888999999999999998877654
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=1.5e-16 Score=139.37 Aligned_cols=293 Identities=17% Similarity=0.224 Sum_probs=201.3
Q ss_pred eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCC-CC-ceeccceeEEeecccccCcccceeEEEEee------CCCC
Q 013545 46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEG-GG-HIAKHRSVFVVDKQHEHGHKYAISSAIWYP------VDTG 117 (441)
Q Consensus 46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~------~~~~ 117 (441)
.-.+.|+| +|.-|++-+.|.++.+|++-....... .+ ........+. +.-...|...+|.+ ++..
T Consensus 52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r------~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYR------YQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEE------eccCCEEEEEEeeeccccCCCccc
Confidence 44678997 466799999999999999743211100 01 1111111111 11223455566653 4667
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecCC------eeEEEeeccCCCCccEEEEEeCCCcEEEEEC-CCCce--eee---
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPG------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-ASGAI--SQT--- 185 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~las~s~d~~I~vwdl-~~~~~--~~~--- 185 (441)
++|+.+.|.-|++||.-+|+....+..-. ...++.|+|++. .|.+ +....|++||+ +.|.. ...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---qlfa-GykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---QLFA-GYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---eEee-cccceEEEeeccCCCCCCcchhhhh
Confidence 99999999999999999999876665321 245788888753 4544 45789999999 45532 111
Q ss_pred --ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545 186 --LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK 263 (441)
Q Consensus 186 --l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (441)
-.+..+.+.+++|+|.....++.|+--.++-||.-.....+.+
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l----------------------------------- 245 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL----------------------------------- 245 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee-----------------------------------
Confidence 1245788999999998776778887666666665432221111
Q ss_pred ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CCcEEEeeCCCCCceeee
Q 013545 264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDVESGRNTLVN 342 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~i~~wd~~~~~~~~~~ 342 (441)
+.+|.+-|+.|+|++||+.|.+|+. |-.|..||++..+..+..
T Consensus 246 ------------------------------------lggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 246 ------------------------------------LGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred ------------------------------------ecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 2368889999999999999999865 678999999976543322
Q ss_pred eeeEEeccCcceEEEeeCCCcEEEEe-CCCceEEEEccC-CceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 343 FETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWS-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~-~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
+.......+..+.+...+++..++++ ..+.|++||..+ |.....+..|...|+.|+++|-=..++|++-. |++..
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq---r~f~~ 366 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ---RIFKY 366 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc---eeecC
Confidence 22222334556677778889999888 457899999988 78888899999999999999997778887655 66655
Q ss_pred CCC
Q 013545 421 SRH 423 (441)
Q Consensus 421 ~~~ 423 (441)
++.
T Consensus 367 ~~d 369 (406)
T KOG2919|consen 367 PKD 369 (406)
T ss_pred CCc
Confidence 544
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=1.4e-16 Score=143.50 Aligned_cols=322 Identities=16% Similarity=0.211 Sum_probs=196.5
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
.+|+++.|.......|+||+.|..|+||-+.+........ .+ .-...+.+|..+|+++.|+| +|++||||+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~------~V--~y~s~Ls~H~~aVN~vRf~p-~gelLASg~ 84 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDM------KV--EYLSSLSRHTRAVNVVRFSP-DGELLASGG 84 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCce------eE--EEeecccCCcceeEEEEEcC-CcCeeeecC
Confidence 6899999986555589999999999999987654321110 11 11123457999999998887 799999999
Q ss_pred CCCcEEEEECC--------C-----C-eEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee
Q 013545 124 YDHYVKVWDTN--------C-----T-RVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL 186 (441)
Q Consensus 124 ~D~~i~iWd~~--------~-----~-~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l 186 (441)
+++.|.+|... + . ..+.... +...++.++++++ +..+++++.|+.+++||+..|.....+
T Consensus 85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d---~~~l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD---SNFLVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC---CceeeeeeccceEEEEEeccceeEeec
Confidence 99999999765 2 1 0111111 2245677777775 458899999999999999999999999
Q ss_pred cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545 187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA 266 (441)
Q Consensus 187 ~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (441)
.+|..-|..++|.|-+++ +++=|.|...+.+.+................ ....
T Consensus 162 ~dh~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~--------------------------~~~~ 214 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLKQVIKRHGLDIMPA--------------------------KAFN 214 (434)
T ss_pred cccccccceeecchhhhh-hhhhccCcccceeeeeeeeeeeeeeeeEeee--------------------------cccC
Confidence 999999999999999986 5788888877777765432211110000000 0000
Q ss_pred CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec----CCcE-----EEeeCCCCC
Q 013545 267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS----DSRI-----RLWDVESGR 337 (441)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~----D~~i-----~~wd~~~~~ 337 (441)
. ..+.....++... -..-...++|+|||.++++.+. ++.+ ++++-...+
T Consensus 215 ~-------------~e~~s~rLfhDeT---------lksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~ 272 (434)
T KOG1009|consen 215 E-------------REGKSTRLFHDET---------LKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK 272 (434)
T ss_pred C-------------CCcceeeeeecCc---------hhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence 0 0000000000000 0122456788899988886532 1222 233211111
Q ss_pred ceee------------eeeeE--EeccCcceE-EEeeCCCcEEEEeCCCceEEEEccCCceEeee-cccccceEEEEEcC
Q 013545 338 NTLV------------NFETV--RLQTSKPIQ-LATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSS 401 (441)
Q Consensus 338 ~~~~------------~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l-~gh~~~v~~v~fsp 401 (441)
.... .+..+ .+....... +..-|-....++++...+.+||-.+-.++... .-|-..|++++||+
T Consensus 273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~ 352 (434)
T KOG1009|consen 273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD 352 (434)
T ss_pred CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecC
Confidence 0000 00000 000000000 11112334445566688999987765555432 34667899999999
Q ss_pred CCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 402 QDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 402 d~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
||..|+-.|.||-+-+=......+.
T Consensus 353 dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 353 DGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred CCcEEEEeccCCceEEEEEcchhcc
Confidence 9999999999998777666655544
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=4.8e-15 Score=144.10 Aligned_cols=292 Identities=27% Similarity=0.477 Sum_probs=205.2
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccC-cccceeEEEE-eeCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG-HKYAISSAIW-YPVD 115 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~-~~~~ 115 (441)
...+|...|.++.+.+ .+..++.++.|+.+.+|+....... +... .+ +...+..+.+ .+ +
T Consensus 60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~-----------~~~~-----~~~~~~~~~~~~~~~~-~ 121 (466)
T COG2319 60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKL-----------IKSL-----EGLHDSSVSKLALSSP-D 121 (466)
T ss_pred eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCcee-----------EEEE-----eccCCCceeeEEEECC-C
Confidence 4568999999999985 5778999999999999998755300 0000 11 1123444444 33 4
Q ss_pred CC-EEEEEeC-CCcEEEEECCC-CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeC-CCcEEEEECCCCceeeeecCCC
Q 013545 116 TG-LFVTGSY-DHYVKVWDTNC-TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTE-DVQVRLCDIASGAISQTLSGHR 190 (441)
Q Consensus 116 ~~-~l~sgs~-D~~i~iWd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~-d~~I~vwdl~~~~~~~~l~~h~ 190 (441)
+. +++..+. |+.+++||+.. ......+. +...+..+.+++... .+++++. |+.+++|++.++..+..+.+|.
T Consensus 122 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (466)
T COG2319 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTLAGHT 198 (466)
T ss_pred cceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEeeccCC
Confidence 44 5555455 99999999987 45444444 445677788888654 6666664 9999999999988899999999
Q ss_pred CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG 270 (441)
Q Consensus 191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (441)
..|.+++|+|+++.++++++.|++|++||.+.+.+...
T Consensus 199 ~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~------------------------------------------ 236 (466)
T COG2319 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS------------------------------------------ 236 (466)
T ss_pred CceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee------------------------------------------
Confidence 99999999998874566669999999998764332220
Q ss_pred ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 350 (441)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~ 350 (441)
....|.... -..|+|++.++++++.|+.+++|++........ ....+.
T Consensus 237 ----------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~ 284 (466)
T COG2319 237 ----------------------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR---TLSGHS 284 (466)
T ss_pred ----------------------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE---EEecCC
Confidence 011233332 227999999999999999999999987654111 112223
Q ss_pred CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeec--ccccceEEEEEcCCCCeEEEe-ecCCcEEEeCCCCCC
Q 013545 351 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFR--GHYEYVNCCCFSSQDQELYTG-GNDRQILVWCPSRHI 424 (441)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~--gh~~~v~~v~fspd~~~l~s~-s~D~~i~vW~~~~~~ 424 (441)
.....+.+.+++..+++++. ..+++|+..+........ +|...+..+.|++++..++.+ ..|+.+++|+.....
T Consensus 285 ~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 44455677776666666332 458999998888777766 898899999994343555555 688999999998776
No 159
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=2.6e-15 Score=142.72 Aligned_cols=280 Identities=12% Similarity=0.197 Sum_probs=170.0
Q ss_pred EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE-eCCCcEEEEECC-C
Q 013545 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG-SYDHYVKVWDTN-C 135 (441)
Q Consensus 58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg-s~D~~i~iWd~~-~ 135 (441)
..++.+.|+.|++||+.+..... .. .. . .+.+....+.++| ++++|+.+ ..++.|.+|++. +
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~------~~-~~-------~-~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~ 67 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALT------LL-QV-------V-DVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADD 67 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCcee------ee-eE-------E-ecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCC
Confidence 34556789999999995321110 00 00 0 1112344566766 77877655 458899999986 3
Q ss_pred CeE--EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-Cc---eeeeecCCCCCeEEEEEecCCCcEEEEe
Q 013545 136 TRV--VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GA---ISQTLSGHRDGIMTVEWSTSSEWILVTG 209 (441)
Q Consensus 136 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~---~~~~l~~h~~~v~~v~fsp~~~~~l~s~ 209 (441)
+.. +......+....+.+++++ ..++++...++.|.+|++++ +. .+..+.+ .....++.|+|++++++++.
T Consensus 68 g~l~~~~~~~~~~~p~~i~~~~~g--~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 68 GALTFAAESPLPGSPTHISTDHQG--RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred CceEEeeeecCCCCceEEEECCCC--CEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEee
Confidence 432 3333344445566777653 34444555688999999964 32 2233333 33457789999999877888
Q ss_pred ecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCccccc
Q 013545 210 GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL 289 (441)
Q Consensus 210 s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (441)
..++.|.+||+.+.+.+..... . ....
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~---~--------------------------------------------------~~~~ 171 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEP---A--------------------------------------------------EVTT 171 (330)
T ss_pred CCCCEEEEEEECCCCcccccCC---C--------------------------------------------------ceec
Confidence 8889999999875321100000 0 0000
Q ss_pred CCCcccccccceeeccCeEEEEEccCCCEEEEeec-CCcEEEeeCCCCCceeeeeeeEEecc------CcceEEEeeCCC
Q 013545 290 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDVESGRNTLVNFETVRLQT------SKPIQLATTQDP 362 (441)
Q Consensus 290 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~i~~wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 362 (441)
.. ......++|+|||+++.+... +++|.+|++................. ..+..+.++|++
T Consensus 172 ----------~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 172 ----------VE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ----------CC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 00 012456899999999877765 89999999974211111111111111 112346788999
Q ss_pred cEEEEeCC--CceEEEEccCCceEeeeccccc---ceEEEEEcCCCCeEEEeec-CCcEEEeCCC
Q 013545 363 AVVFVPCM--TAVKAFDIWSGKTCLTFRGHYE---YVNCCCFSSQDQELYTGGN-DRQILVWCPS 421 (441)
Q Consensus 363 ~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~---~v~~v~fspd~~~l~s~s~-D~~i~vW~~~ 421 (441)
..++++.. ..+.+|++.+.....++.+|.. ....++|+|||++|+++.. +++|.+|+++
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 99888754 5789999865432233333422 4568999999999997765 8999999764
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.1e-18 Score=170.67 Aligned_cols=212 Identities=19% Similarity=0.355 Sum_probs=164.1
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
.-|.|.|..|.|++..+++||||++||.|.|||+.+.+..-.-+ .......|.++.|......+|
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---------------~~~~~~eI~~lsWNrkvqhIL 177 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---------------SQAPPSEIKCLSWNRKVSHIL 177 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---------------CCCCcccceEeccchhhhHHh
Confidence 35999999999999888899999999999999997654321000 113456799999988778899
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEecCC---eeEEEeeccCCCCccEEEEEeC-CCcEEEEECCCC-ceeeeecCCCCCeE
Q 013545 120 VTGSYDHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTE-DVQVRLCDIASG-AISQTLSGHRDGIM 194 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~las~s~-d~~I~vwdl~~~-~~~~~l~~h~~~v~ 194 (441)
+|++.++++.|||++..+.+..+...+ .+..+.|+|+..+..++|+... .-.|.+||++.. .+++++++|...|.
T Consensus 178 AS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gil 257 (1049)
T KOG0307|consen 178 ASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGIL 257 (1049)
T ss_pred hccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccccee
Confidence 999999999999999887766655433 3667889998665444443322 126999998754 46788999999999
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS 274 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (441)
++.|++.+..+|+|++.|+.|.+|+..+++.+..+
T Consensus 258 slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~--------------------------------------------- 292 (1049)
T KOG0307|consen 258 SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL--------------------------------------------- 292 (1049)
T ss_pred eeccCCCCchhhhcccCCCCeeEecCCCceEeeec---------------------------------------------
Confidence 99999998778999999999999999876533221
Q ss_pred CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCC
Q 013545 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~ 337 (441)
....+++..+.|+|... .+++++-||.|.|+.+....
T Consensus 293 --------------------------p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 293 --------------------------PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred --------------------------CCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 01124678899999876 78888999999999988654
No 161
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=1.6e-18 Score=168.39 Aligned_cols=237 Identities=23% Similarity=0.384 Sum_probs=173.4
Q ss_pred cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~ 178 (441)
.||..+|.|+++.. .|.+++||++|..+|||..+++.++..... .+.+...+.+. .+.++|+++.|..|++|-+.
T Consensus 187 lgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~---~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS---NNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred Hhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccch---hhhhhhhcccCceEEEEecC
Confidence 49999999988865 588999999999999999999888776553 34454444443 45688999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545 179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP 258 (441)
Q Consensus 179 ~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (441)
++.++..+.||++.|++++|+|- .+.+.||++++||.+-. .+.. .+
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~----~~~y-------------------------~p 308 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLE----PRIY-------------------------VP 308 (1113)
T ss_pred CCchHHHHhccccceeeeccCcc-----ccCCCCCceEecccccc----cccc-------------------------CC
Confidence 99999999999999999999984 47789999999998710 0000 00
Q ss_pred CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC-
Q 013545 259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR- 337 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~- 337 (441)
++. .+ .....+-++.|..++..++||+.|+..+.|.+.-..
T Consensus 309 rp~-~~-------------------------------------~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~ 350 (1113)
T KOG0644|consen 309 RPL-KF-------------------------------------TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW 350 (1113)
T ss_pred CCC-Cc-------------------------------------ccccceeeeeccccccccccccCCcccccchhhHhhh
Confidence 000 00 001335667788889999999999999998765321
Q ss_pred -ceeeeeeeEEeccCcceEEEeeCCC-cEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEE-EeecCC
Q 013545 338 -NTLVNFETVRLQTSKPIQLATTQDP-AVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY-TGGNDR 413 (441)
Q Consensus 338 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~-s~s~D~ 413 (441)
.....|.+ .+.+. .+.+++ ..-...+|++.+|.+++.+.||..++..+.|+|-+..++ +++.||
T Consensus 351 ~~~~lif~t------------~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dg 418 (1113)
T KOG0644|consen 351 RSNLLIFVT------------RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDG 418 (1113)
T ss_pred hccceEEEe------------ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCC
Confidence 11111111 11111 111111 123567899999999999999999999999999877766 999999
Q ss_pred cEEEeCCCCCC
Q 013545 414 QILVWCPSRHI 424 (441)
Q Consensus 414 ~i~vW~~~~~~ 424 (441)
.+.|||+-.+.
T Consensus 419 st~iwdi~eg~ 429 (1113)
T KOG0644|consen 419 STIIWDIWEGI 429 (1113)
T ss_pred ceEeeecccCC
Confidence 99999987554
No 162
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=6.7e-16 Score=146.20 Aligned_cols=168 Identities=20% Similarity=0.309 Sum_probs=112.3
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccc-ceeEEEEeeCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY-AISSAIWYPVDT 116 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~~~~~ 116 (441)
++.+|...|+.+.|+|-.+.+|+|||.|..++||.+..+-... + +...+. .||.. .|-++.|+|...
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~----L-Sape~~-------~g~~~~~vE~l~fHpTaD 141 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK----L-SAPEID-------VGGGNVIVECLRFHPTAD 141 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc----c-CCccee-------ecCCceEEEEeecccCcC
Confidence 4668999999999998777789999999999999987543211 1 001111 14443 466777887656
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-CceeeeecCCCCCe-
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGHRDGI- 193 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~l~~h~~~v- 193 (441)
.+|+++ .-+++.|||+.+++.+..... ...+.+..|+.++ .+|++++.|..|+|||... ++.++...+|.+.-
T Consensus 142 gil~s~-a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG---~llatscKdkqirifDPRa~~~piQ~te~H~~~rd 217 (1012)
T KOG1445|consen 142 GILASG-AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDG---KLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRD 217 (1012)
T ss_pred ceEEec-cCceEEEEEcccCceeecccCCchhhhccccccCC---ceEeeecCCcceEEeCCccCCCccccccccccchh
Confidence 677766 458999999999988765553 4456666677654 5899999999999999865 45677777776542
Q ss_pred EEEEEecCCCcEEEEeecC----CcEEEEEcCC
Q 013545 194 MTVEWSTSSEWILVTGGCD----GAIRFWDIRR 222 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~D----g~I~iWD~~~ 222 (441)
.-+.|..+-.+ |+|.+.+ ..|++||++.
T Consensus 218 sRv~w~Gn~~r-lisTGF~~~R~reV~~~Dtr~ 249 (1012)
T KOG1445|consen 218 SRVLWAGNWER-LISTGFTTKRIREVRAYDTRK 249 (1012)
T ss_pred heeeeccchhh-hhhcccchhhheeeeeeeccc
Confidence 12444433222 3343332 3466666543
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=8.8e-17 Score=144.30 Aligned_cols=206 Identities=21% Similarity=0.326 Sum_probs=146.9
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEE-------EEEe-cCCeeEEEeeccCCCCccEEEEEeCCC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV-------MNFK-MPGKVYRTAMSPLAASHMLIAAGTEDV 170 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~ 170 (441)
..||+++|..+.|.|.+...+||||.|.+|.||++-.+-.. ..+. +...+--+.++|... ++|++++.|+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--NVLlsag~Dn 154 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--NVLLSAGSDN 154 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--hhHhhccCCc
Confidence 35999999999999999999999999999999997544322 2222 233466677888654 5788889999
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545 171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 171 ~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
.|.+||+.+|+.+-++. |.+.|.++.|+.+|. +|++.+.|+.||+||.|+++.+...
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~--------------------- 211 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEG--------------------- 211 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeec---------------------
Confidence 99999999999888887 999999999999997 5899999999999999987543321
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccC-eEEEEEccCCCEEEEe---ecCC
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSA---GSDS 326 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sg---s~D~ 326 (441)
.+|.+. -..+.|-.+|..+-|| ..++
T Consensus 212 --------------------------------------------------~~heG~k~~Raifl~~g~i~tTGfsr~seR 241 (472)
T KOG0303|consen 212 --------------------------------------------------VAHEGAKPARAIFLASGKIFTTGFSRMSER 241 (472)
T ss_pred --------------------------------------------------ccccCCCcceeEEeccCceeeecccccccc
Confidence 122221 1233466677644444 4578
Q ss_pred cEEEeeCCCCCceeeeeeeEEeccC-cceEEEeeCCCcEEEEeC--CCceEEEEccCCc
Q 013545 327 RIRLWDVESGRNTLVNFETVRLQTS-KPIQLATTQDPAVVFVPC--MTAVKAFDIWSGK 382 (441)
Q Consensus 327 ~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~ 382 (441)
++-+||...-.... .+. .+..+ +...--+.+|..++++.+ ++.+|.|.+.+..
T Consensus 242 q~aLwdp~nl~eP~-~~~--elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 242 QIALWDPNNLEEPI-ALQ--ELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ceeccCcccccCcc-eeE--EeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 89999987654321 122 23333 333334456666777654 4689999987655
No 164
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.1e-16 Score=137.73 Aligned_cols=236 Identities=17% Similarity=0.310 Sum_probs=153.5
Q ss_pred ecCCCCceeEEEccCC-CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC-C
Q 013545 39 VSPHKGSINSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD-T 116 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~ 116 (441)
-+.|.++|..+.|.++ -|+.+|++|.|++++||.-+... .+..+..... .......+..|.++.|.|.. |
T Consensus 55 Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~-~~~~~~~Wv~-------~ttl~DsrssV~DV~FaP~hlG 126 (361)
T KOG2445|consen 55 WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS-EEAHGRRWVR-------RTTLVDSRSSVTDVKFAPKHLG 126 (361)
T ss_pred EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc-cccccceeEE-------EEEeecCCcceeEEEecchhcc
Confidence 4579999999998744 37889999999999999743111 1110100101 11223455679999997754 6
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEec--------------CCeeEEEeeccCCCCccEEEEEeCC-----CcEEEEEC
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM--------------PGKVYRTAMSPLAASHMLIAAGTED-----VQVRLCDI 177 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~las~s~d-----~~I~vwdl 177 (441)
-.||+++.||++|||+.-..--+..+++ .....++.+.+.-....+||+|+.+ +.++||..
T Consensus 127 LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 127 LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 6799999999999998644322222221 1234556666544456788888765 47888876
Q ss_pred CCC--c--eeeeecCCCCCeEEEEEecCC-C--cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545 178 ASG--A--ISQTLSGHRDGIMTVEWSTSS-E--WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 178 ~~~--~--~~~~l~~h~~~v~~v~fsp~~-~--~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
..+ + .+.++.+|+++|+.++|.|+- + .+||+++.|| |+||.++.... . ++.. .....
T Consensus 207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s-~-i~~e-------------e~~~~ 270 (361)
T KOG2445|consen 207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARS-A-IEEE-------------EVLAP 270 (361)
T ss_pred cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccc-h-hhhh-------------cccCC
Confidence 543 2 345788999999999999983 2 3789999999 99999874210 0 0000 00000
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL 330 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~ 330 (441)
... .. +. +.....+..|.+.|..+.|.-.|..|+|.|.||.||+
T Consensus 271 ~~~-----------------------------~~----l~---v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRL 314 (361)
T KOG2445|consen 271 DLM-----------------------------TD----LP---VEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRL 314 (361)
T ss_pred CCc-----------------------------cc----cc---eEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeee
Confidence 000 00 00 0001124579999999999999999999999999999
Q ss_pred eeCC
Q 013545 331 WDVE 334 (441)
Q Consensus 331 wd~~ 334 (441)
|...
T Consensus 315 Wkan 318 (361)
T KOG2445|consen 315 WKAN 318 (361)
T ss_pred hhhh
Confidence 9654
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=1.6e-14 Score=140.37 Aligned_cols=289 Identities=28% Similarity=0.502 Sum_probs=203.6
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeC-CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGAS-DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
...+.+|...|..++|+| +++++++++. |+.+++|++...... ....+|...|.++.+.+
T Consensus 148 ~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~v~~~~~~~- 208 (466)
T COG2319 148 IRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPL-----------------STLAGHTDPVSSLAFSP- 208 (466)
T ss_pred EEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceE-----------------EeeccCCCceEEEEEcC-
Confidence 344678999999999997 4668888886 999999998753211 11235888999999985
Q ss_pred CCC-EEEEEeCCCcEEEEECCCCeEEE-EEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-eeeecCCCC
Q 013545 115 DTG-LFVTGSYDHYVKVWDTNCTRVVM-NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRD 191 (441)
Q Consensus 115 ~~~-~l~sgs~D~~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~~~l~~h~~ 191 (441)
++. ++++++.|++|++||...+..+. .+..........+++.. .++++++.|+.+++|++..... ...+.+|..
T Consensus 209 ~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 285 (466)
T COG2319 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG---SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285 (466)
T ss_pred CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCC---CEEEEecCCCcEEEeeecCCCcEEEEEecCCc
Confidence 665 66666999999999988777666 34332222111455543 4677899999999999987764 444478899
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
.+.++.|.|++.. +++++.|+.+++||++.........
T Consensus 286 ~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~----------------------------------------- 323 (466)
T COG2319 286 SVLSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSLT----------------------------------------- 323 (466)
T ss_pred cEEEEEECCCCCE-EEEeeCCCcEEEEEcCCCceEEEee-----------------------------------------
Confidence 9999999997765 5668889999999887543221110
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEe-ecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA-GSDSRIRLWDVESGRNTLVNFETVRLQT 350 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg-s~D~~i~~wd~~~~~~~~~~~~~~~~~~ 350 (441)
...|...+..+.|.+++..++.+ ..|+.+++|++.... ... .... .
T Consensus 324 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~---~~~~-~ 370 (466)
T COG2319 324 ----------------------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLK---TLEG-H 370 (466)
T ss_pred ----------------------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeE---EecC-C
Confidence 01344567888884343555555 788999999998765 111 1111 1
Q ss_pred CcceEEEeeCCCcEEEE--eCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545 351 SKPIQLATTQDPAVVFV--PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 351 ~~~~~~~~~~~~~~~~~--~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~ 422 (441)
.....+.+.+ ....+. .....+.+|+............+...+..+.+++++..+++++.+.++++|+..+
T Consensus 371 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 371 SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 1123444444 322222 2446899999988887777766657899999999999999999999999999987
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=5.1e-16 Score=136.12 Aligned_cols=244 Identities=16% Similarity=0.253 Sum_probs=174.1
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCC-------CeE-------EEEEecCCeeEEEeecc----CCCCccEEEEEeCC
Q 013545 108 SAIWYPVDTGLFVTGSYDHYVKVWDTNC-------TRV-------VMNFKMPGKVYRTAMSP----LAASHMLIAAGTED 169 (441)
Q Consensus 108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~-------~~~-------~~~~~~~~~~~~~~~~~----~~~~~~~las~s~d 169 (441)
.+.|+| ||.-|++-+.|..+++|++-. +.. ...+..++.++...+-+ +.++..++|+.+.+
T Consensus 54 gckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 54 GCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred cceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 467877 888999999999999998631 111 11222345566655543 33556789999999
Q ss_pred CcEEEEECCCCceeeeecC--CCCCe---EEEEEecCCCcEEEEeecCCcEEEEEcC-CCceeeEeccCCccccCCCCcc
Q 013545 170 VQVRLCDIASGAISQTLSG--HRDGI---MTVEWSTSSEWILVTGGCDGAIRFWDIR-RAGCFRVLDQSQSQLGRRPPLL 243 (441)
Q Consensus 170 ~~I~vwdl~~~~~~~~l~~--h~~~v---~~v~fsp~~~~~l~s~s~Dg~I~iWD~~-~~~~~~~~~~~~~~~~~~~~~~ 243 (441)
.-|++||.-+|++...+++ |.+++ .++.|+|||..++ ++-.+.||+||+. .+....+.-..
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~----------- 199 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTV----------- 199 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhh-----------
Confidence 9999999999998877764 55554 5899999999754 4567899999994 33211110000
Q ss_pred cccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEe
Q 013545 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSA 322 (441)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sg 322 (441)
. ....+..+-+.+++|+|-. +.++.|
T Consensus 200 -------------------------------------~----------------~~k~gq~giisc~a~sP~~~~~~a~g 226 (406)
T KOG2919|consen 200 -------------------------------------T----------------KGKFGQKGIISCFAFSPMDSKTLAVG 226 (406)
T ss_pred -------------------------------------h----------------cccccccceeeeeeccCCCCcceeee
Confidence 0 0001234568899999965 589999
Q ss_pred ecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEcc-CCceEeeecccccc-eEEEE
Q 013545 323 GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIW-SGKTCLTFRGHYEY-VNCCC 398 (441)
Q Consensus 323 s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~-~~~~~~~l~gh~~~-v~~v~ 398 (441)
+...++-|+.-..+++.. .+..+.+.+..+.+.++|..+++++. ..+..||+. .+..+..|..|.+. -..|-
T Consensus 227 sY~q~~giy~~~~~~pl~----llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~ 302 (406)
T KOG2919|consen 227 SYGQRVGIYNDDGRRPLQ----LLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRIL 302 (406)
T ss_pred cccceeeeEecCCCCcee----eecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEE
Confidence 999999998877665432 22345677888999999999999876 578999994 46677888888762 22333
Q ss_pred --EcCCCCeEEEeecCCcEEEeCCCC
Q 013545 399 --FSSQDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 399 --fspd~~~l~s~s~D~~i~vW~~~~ 422 (441)
..|++++|+||+.||.|++||..+
T Consensus 303 FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 303 FDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred EecCCCCceeeccCCCccEEEEecCC
Confidence 458899999999999999999876
No 167
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=4.5e-16 Score=134.50 Aligned_cols=166 Identities=18% Similarity=0.295 Sum_probs=125.6
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee-CCCCEE
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-VDTGLF 119 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~~l 119 (441)
.|-+.|.|+.|.| +++-|++-. |..|.+|+++...... ..+......+|....++..|+| .++.++
T Consensus 121 eavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~v-----------aev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 121 EAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIV-----------AEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred HHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchh-----------eeecccccccccceecccccCCCCccceE
Confidence 4557999999998 566677765 8999999998665311 1111111124666677888988 567777
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEe--cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCeEEE
Q 013545 120 VTGSYDHYVKVWDTNCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTV 196 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v~~v 196 (441)
++. .|++++.||+++..+...+. +...+..+.+.|. ...+|++|+.|+.|++||++.. .+++++.+|...|++|
T Consensus 188 ~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpn--kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 188 ATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPN--KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV 264 (370)
T ss_pred EEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCC--ceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence 776 67899999999877655443 1223666667664 4578999999999999999765 5788999999999999
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCC
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~ 222 (441)
.|+|..+.+++|||.|..|.+|...+
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccc
Confidence 99999877899999999999998653
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.2e-15 Score=125.59 Aligned_cols=172 Identities=18% Similarity=0.351 Sum_probs=118.2
Q ss_pred ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~ 124 (441)
.|.+-+++|+ +++|+.|+.+|+|.+..+.....-.. .......++ ..++|.++|..++|. ..+|++|++
T Consensus 12 tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa--~~~gk~~iv-----~eqahdgpiy~~~f~---d~~Lls~gd 80 (325)
T KOG0649|consen 12 TVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSA--EPPGKLKIV-----PEQAHDGPIYYLAFH---DDFLLSGGD 80 (325)
T ss_pred HHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhcccc--CCCCCccee-----eccccCCCeeeeeee---hhheeeccC
Confidence 3566678874 78999999999999998764321110 001111111 125899999999997 347778765
Q ss_pred CCcEEEEECCCCeE------EEEEecC--------CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC
Q 013545 125 DHYVKVWDTNCTRV------VMNFKMP--------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR 190 (441)
Q Consensus 125 D~~i~iWd~~~~~~------~~~~~~~--------~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~ 190 (441)
|.|+=|.-+.... +...+.+ -.++...+.|. .+.+|.+| .|+.++-||+++|+..++++||+
T Consensus 81 -G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~--enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 81 -GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS--ENSILFAG-GDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC--CCcEEEec-CCeEEEEEEecCCEEEEEEcCCc
Confidence 9999996432111 1111111 11333334443 23345444 79999999999999999999999
Q ss_pred CCeEEEEE-ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCC
Q 013545 191 DGIMTVEW-STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQ 233 (441)
Q Consensus 191 ~~v~~v~f-sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~ 233 (441)
+-|.++.- +.+++ +.||++||++|+||++++++..+++...
T Consensus 157 DYvH~vv~R~~~~q--ilsG~EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQ--ILSGAEDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred ceeeeeeecccCcc--eeecCCCccEEEEeccccceeEEecccc
Confidence 99999998 44443 5799999999999999999998887643
No 169
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.8e-15 Score=149.12 Aligned_cols=200 Identities=17% Similarity=0.268 Sum_probs=151.3
Q ss_pred CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 121 (441)
|...|.+++.. +.+|++|+.+++|.+|....++.- .++ ...+-++.+++++. +|.++|.
T Consensus 55 ~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~----------~iL-------~Rftlp~r~~~v~g-~g~~iaa 113 (933)
T KOG1274|consen 55 SGELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEED----------TIL-------ARFTLPIRDLAVSG-SGKMIAA 113 (933)
T ss_pred cCceeEEEeec---ccceEEeeccceEEEeeCCCCCcc----------cee-------eeeeccceEEEEec-CCcEEEe
Confidence 77788888875 347999999999999998765431 011 12334577777765 7899999
Q ss_pred EeCCCcEEEEECCCCeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC--------CCC
Q 013545 122 GSYDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH--------RDG 192 (441)
Q Consensus 122 gs~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h--------~~~ 192 (441)
||+|-.|++-+..+......+ .+.+++.++.+.|. ..+||+.+-||.|++||++++.+..++.+- ...
T Consensus 114 gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~---~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i 190 (933)
T KOG1274|consen 114 GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK---GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRI 190 (933)
T ss_pred ecCceeEEEEeccccchheeecccCCceeeeeEcCC---CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccce
Confidence 999999999998877655544 46788999998885 458999999999999999999887766431 334
Q ss_pred eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (441)
+.-++|+|++.. |+..+.|+.|++|+.........+.
T Consensus 191 ~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~~f~Lr------------------------------------------ 227 (933)
T KOG1274|consen 191 CTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWELQFKLR------------------------------------------ 227 (933)
T ss_pred eeeeeecCCCCe-EEeeccCCeEEEEccCCceeheeec------------------------------------------
Confidence 567999999765 4567789999999976532211110
Q ss_pred ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~ 335 (441)
...|...+..++|+|+|+|||+++.||.|.|||..+
T Consensus 228 ---------------------------~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 228 ---------------------------DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ---------------------------ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 011223388999999999999999999999999986
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.72 E-value=5.2e-16 Score=147.69 Aligned_cols=290 Identities=15% Similarity=0.215 Sum_probs=201.8
Q ss_pred ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~ 124 (441)
.|+.++|-|+ |..|+-+. +..+.|||...+.. .++.+||++.|.|++++. ||++||||+.
T Consensus 14 ci~d~afkPD-GsqL~lAA-g~rlliyD~ndG~l-----------------lqtLKgHKDtVycVAys~-dGkrFASG~a 73 (1081)
T KOG1538|consen 14 CINDIAFKPD-GTQLILAA-GSRLLVYDTSDGTL-----------------LQPLKGHKDTVYCVAYAK-DGKRFASGSA 73 (1081)
T ss_pred chheeEECCC-CceEEEec-CCEEEEEeCCCccc-----------------ccccccccceEEEEEEcc-CCceeccCCC
Confidence 8999999975 44555543 45689999987753 245679999999999987 8999999999
Q ss_pred CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCc
Q 013545 125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW 204 (441)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~ 204 (441)
|+.|.+|..+- +-+..+.+...+.+..|.|.. ..|++++. +..-+|..+....++. --...+.+.+|..||++
T Consensus 74 DK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP~~---h~LasCsL-sdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqy 146 (1081)
T KOG1538|consen 74 DKSVIIWTSKL-EGILKYSHNDAIQCMSFNPIT---HQLASCSL-SDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQY 146 (1081)
T ss_pred ceeEEEecccc-cceeeeccCCeeeEeecCchH---HHhhhcch-hhccccChhhhhHHhh--hhheeEEEeeecCCCcE
Confidence 99999997642 224456677778888887753 35777764 3467888765432211 12456788999999985
Q ss_pred EEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCC
Q 013545 205 ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGS 284 (441)
Q Consensus 205 ~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (441)
|+-|-.||+|.|-+-......
T Consensus 147 -lalG~~nGTIsiRNk~gEek~---------------------------------------------------------- 167 (1081)
T KOG1538|consen 147 -LALGMFNGTISIRNKNGEEKV---------------------------------------------------------- 167 (1081)
T ss_pred -EEEeccCceEEeecCCCCcce----------------------------------------------------------
Confidence 788999999998753210000
Q ss_pred cccccCCCcccccccceeeccCeEEEEEccCCC-----EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545 285 VRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-----YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359 (441)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-----~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (441)
. ..+..+...+|.+++|+|... .++...=..++.++.++... ....+.....|.++.+.
T Consensus 168 ---~--------I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-----Igk~r~L~FdP~CisYf 231 (1081)
T KOG1538|consen 168 ---K--------IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-----IGKDRALNFDPCCISYF 231 (1081)
T ss_pred ---E--------EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-----ecccccCCCCchhheec
Confidence 0 001123456799999999753 34555555566666554311 11111122356778889
Q ss_pred CCCcEEEEeCCC-ceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccCCccCCcC
Q 013545 360 QDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQDQD 437 (441)
Q Consensus 360 ~~~~~~~~~~~~-~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~~~~~~~ 437 (441)
++|.++..++.. .+++|- ..|-.+.++.....+||.|+..|++++++-|..||||-.+++-.....++...+|-..+
T Consensus 232 ~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~ 309 (1081)
T KOG1538|consen 232 TNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRD 309 (1081)
T ss_pred cCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhh
Confidence 999998887664 555554 45667777777888999999999999999999999999999877776666666655443
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.72 E-value=1.2e-15 Score=137.11 Aligned_cols=170 Identities=19% Similarity=0.362 Sum_probs=136.5
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
...||++.|..++|+|-++..|||||.|-+|.||.+-.+-... ....++. .+.||...|..+.|+|.-.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-----~ltepvv-----~L~gH~rrVg~V~wHPtA~N 145 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-----DLTEPVV-----ELYGHQRRVGLVQWHPTAPN 145 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-----CcccceE-----EEeecceeEEEEeecccchh
Confidence 4568999999999999988899999999999999985432110 0011222 23589999999999998889
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCC-eEEE
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG-IMTV 196 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~-v~~v 196 (441)
.|+|+|.|.+|.+|++.+++.+.++.++..+++..|+.++ .+|++.+.|..|+|||..+++.+..-.+|.+. -.-+
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dG---s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDG---SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA 222 (472)
T ss_pred hHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCC---ceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence 9999999999999999999988888889999999888764 48999999999999999999998887788764 3456
Q ss_pred EEecCCCcEEEEee----cCCcEEEEEcCC
Q 013545 197 EWSTSSEWILVTGG----CDGAIRFWDIRR 222 (441)
Q Consensus 197 ~fsp~~~~~l~s~s----~Dg~I~iWD~~~ 222 (441)
-|-.+++ ++ |.+ .+..+-+||...
T Consensus 223 ifl~~g~-i~-tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 223 IFLASGK-IF-TTGFSRMSERQIALWDPNN 250 (472)
T ss_pred EEeccCc-ee-eeccccccccceeccCccc
Confidence 6777776 44 444 467889998653
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=5.6e-16 Score=136.15 Aligned_cols=257 Identities=18% Similarity=0.244 Sum_probs=173.9
Q ss_pred CCCceeEEEccCCC---CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 42 HKGSINSLQVDLTE---ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 42 H~~~V~~l~~s~~~---~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
|...-+.++|+.+- +-+||.|+.-|.|+|.|+.++... ....||..+|+.+.+.|.+.++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~-----------------~~~~ghG~sINeik~~p~~~ql 150 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS-----------------KNYRGHGGSINEIKFHPDRPQL 150 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc-----------------cceeccCccchhhhcCCCCCcE
Confidence 77777777766332 348999999999999999765421 2345899999999999988889
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEec----CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee-----------
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFKM----PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS----------- 183 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~----------- 183 (441)
++|||.|.+||+|++++..++..+.. .+.+.++.++.++. .++|++.|.++++|+++..+..
T Consensus 151 vls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd---~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~ 227 (385)
T KOG1034|consen 151 VLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD---RIASCGMDHSLKLWRLNVKEFKNKLELSITYSP 227 (385)
T ss_pred EEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC---eeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence 99999999999999999999988753 35688888888654 7999999999999999732110
Q ss_pred --------------e---eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccc
Q 013545 184 --------------Q---TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK 246 (441)
Q Consensus 184 --------------~---~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (441)
. +-.-|...|.|+.|-. + +++|-|.++.|..|-.... -..++.... + .. +
T Consensus 228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d-~ilSkscenaI~~w~pgkl--~e~~~~vkp-----~-es-~- 294 (385)
T KOG1034|consen 228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D-FILSKSCENAIVCWKPGKL--EESIHNVKP-----P-ES-A- 294 (385)
T ss_pred CCccCcCCccccccccccccccccchHHHHHHHh--h-heeecccCceEEEEecchh--hhhhhccCC-----C-cc-c-
Confidence 0 1134777788888875 3 4679899999999975211 000000000 0 00 0
Q ss_pred ccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEE--EccCCCEEEEeec
Q 013545 247 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK--VTEDGMYLLSAGS 324 (441)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~s~dg~~l~sgs~ 324 (441)
..+.. ...--...+.-|. |.|-++.||.|.+
T Consensus 295 ------------------------------------~Ti~~-----------~~~~~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 295 ------------------------------------TTILG-----------EFDYPMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred ------------------------------------eeeee-----------EeccCccceEEEEEeecHHHHHHhhccC
Confidence 00000 0001123344454 5566889999999
Q ss_pred CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEc
Q 013545 325 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDI 378 (441)
Q Consensus 325 D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~ 378 (441)
.|.|.+||++...+......+.........+.+++.|+..++..|. ..|--||.
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 9999999999765432211111122234557889999998888776 56777764
No 173
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.71 E-value=8.8e-16 Score=141.57 Aligned_cols=272 Identities=14% Similarity=0.197 Sum_probs=178.5
Q ss_pred EEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC--C
Q 013545 59 LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC--T 136 (441)
Q Consensus 59 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~--~ 136 (441)
|..+|.-.+++|||+...+.... ++ .+...-++.++.|.+.+--.+++.+.|..+++|.-.. +
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~----------~~-----~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~ 69 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSE----------YV-----HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP 69 (673)
T ss_pred eeeeccCCceEEeecccccCccc----------cc-----cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCC
Confidence 33444456789999875543211 00 0111123777888763322446667899999996432 2
Q ss_pred eEEEEEecCCe-eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcE
Q 013545 137 RVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI 215 (441)
Q Consensus 137 ~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I 215 (441)
++-..-+..+. ..++... . ...++++|+..+.|+|||++..-+.+.+++|.+.|+++.|...+.+ +|+++..|.|
T Consensus 70 ~Vp~~~k~~gd~~~Cv~~~--s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey-iAsvs~gGdi 145 (673)
T KOG4378|consen 70 EVPRVRKLTGDNAFCVACA--S-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY-IASVSDGGDI 145 (673)
T ss_pred ccceeeccccchHHHHhhh--h-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcce-eEEeccCCcE
Confidence 22222222222 1222222 1 2257889999999999999977777889999999999999988775 7999999999
Q ss_pred EEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccc
Q 013545 216 RFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLS 295 (441)
Q Consensus 216 ~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (441)
-|-.+.++.....|.
T Consensus 146 iih~~~t~~~tt~f~----------------------------------------------------------------- 160 (673)
T KOG4378|consen 146 IIHGTKTKQKTTTFT----------------------------------------------------------------- 160 (673)
T ss_pred EEEecccCcccccee-----------------------------------------------------------------
Confidence 999887542110000
Q ss_pred ccccceeeccCeEEEEEccCCCE-EEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEE-eCC-Cc
Q 013545 296 SQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFV-PCM-TA 372 (441)
Q Consensus 296 ~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ 372 (441)
.+....|.-|.|||-.+. |.+++.+|.|.+||+....+. ++....+..+..-++++|....+++ .+. ..
T Consensus 161 -----~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk 232 (673)
T KOG4378|consen 161 -----IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---FHASEAHSAPCRGICFSPSNEALLVSVGYDKK 232 (673)
T ss_pred -----cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---cchhhhccCCcCcceecCCccceEEEecccce
Confidence 001123667889988765 667899999999999876532 2222222233334667777665544 333 58
Q ss_pred eEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545 373 VKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 373 ~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~ 423 (441)
+.+||+.+.+....|. ..-|...|+|+++|.+|+.|...|.|..+|+..-
T Consensus 233 i~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 233 INIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred EEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 9999998776665554 4457999999999999999999999999998643
No 174
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.7e-16 Score=144.80 Aligned_cols=307 Identities=22% Similarity=0.273 Sum_probs=212.6
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
+.+.+|.|.|+.+.|+ ..|..|+|||.|..|.+||-..+... .....||...|.-..|.|..+
T Consensus 136 ~kL~~H~GcVntV~FN-~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------l~f~SGH~~NvfQaKFiP~s~ 198 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFN-QRGDVLASGSDDLQVVVWDWVSGSPK----------------LSFESGHCNNVFQAKFIPFSG 198 (559)
T ss_pred hcccCCCCccceeeec-ccCceeeccCccceEEeehhhccCcc----------------cccccccccchhhhhccCCCC
Confidence 4578999999999998 56889999999999999997654321 112237777777777777544
Q ss_pred -CEEEEEeCCCcEEEEECC-CCeEE---EEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee--c-C
Q 013545 117 -GLFVTGSYDHYVKVWDTN-CTRVV---MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--S-G 188 (441)
Q Consensus 117 -~~l~sgs~D~~i~iWd~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l--~-~ 188 (441)
.-+++++.|+.+|+=.+. ++.+. ...++.+++..++.-|+.+ .-|.+++.|+.++-+|+.++.+...+ + .
T Consensus 199 d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 199 DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeecc
Confidence 458999999999997653 34433 2345678888888888754 45778999999999999887654332 2 2
Q ss_pred CCC---CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545 189 HRD---GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS 265 (441)
Q Consensus 189 h~~---~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (441)
+.. ...+++..|...+.|+.++.|..+|+||.|....-. .
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~----~--------------------------------- 319 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE----N--------------------------------- 319 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcc----c---------------------------------
Confidence 333 456889999988889999999999999987521000 0
Q ss_pred CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce---e-e
Q 013545 266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT---L-V 341 (441)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~---~-~ 341 (441)
+ +.+. .+.+..+ ......-|++++++.++.-|.+.-.|..|+++.-..+... . .
T Consensus 320 -n---------------~~~~-~f~p~hl-----~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s 377 (559)
T KOG1334|consen 320 -N---------------GVLD-KFCPHHL-----VEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSS 377 (559)
T ss_pred -c---------------chhh-hcCCccc-----cccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCc
Confidence 0 0000 0000000 0011234899999988888888888999999954432210 0 0
Q ss_pred ---eeeeE--EeccCc--ceEE-EeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC
Q 013545 342 ---NFETV--RLQTSK--PIQL-ATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412 (441)
Q Consensus 342 ---~~~~~--~~~~~~--~~~~-~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D 412 (441)
.+... +.+.+. +..+ -+.|...++++++. +.+-+|+-.+++.+..+.|-..-|+|+.-+|---.|||.|-|
T Consensus 378 ~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid 457 (559)
T KOG1334|consen 378 PREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGID 457 (559)
T ss_pred chhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCc
Confidence 00000 011111 1112 23455677777765 899999999999998888888899999999999999999999
Q ss_pred CcEEEeCCC
Q 013545 413 RQILVWCPS 421 (441)
Q Consensus 413 ~~i~vW~~~ 421 (441)
..||||.+-
T Consensus 458 ~DVKIWTP~ 466 (559)
T KOG1334|consen 458 HDVKIWTPL 466 (559)
T ss_pred cceeeecCC
Confidence 999999994
No 175
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8.2e-16 Score=144.79 Aligned_cols=241 Identities=18% Similarity=0.258 Sum_probs=170.0
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~ 178 (441)
..||++.|.++...+ .|..|||||.||+||||.+.++.++.++.+.+.+.+++|.|.+. ..+||++-... +.+.+..
T Consensus 396 yrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~-~~vLAvA~~~~-~~ivnp~ 472 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSD-LCVLAVAVGEC-VLIVNPI 472 (733)
T ss_pred EeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCC-ceeEEEEecCc-eEEeCcc
Confidence 359999999999987 79999999999999999999999999999999999999999764 34555554333 5554432
Q ss_pred CCce-------------------------------------eeeecCCCCCeEEEEEecCCCcEEEEeecC---CcEEEE
Q 013545 179 SGAI-------------------------------------SQTLSGHRDGIMTVEWSTSSEWILVTGGCD---GAIRFW 218 (441)
Q Consensus 179 ~~~~-------------------------------------~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D---g~I~iW 218 (441)
-|.. +...-.|...|..+.|+..|++ |++...+ ..|-|.
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY-latV~~~~~~~~VliH 551 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY-LATVMPDSGNKSVLIH 551 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce-EEEeccCCCcceEEEE
Confidence 2200 1112246677888888888886 4554332 356666
Q ss_pred EcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccc
Q 013545 219 DIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQD 298 (441)
Q Consensus 219 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (441)
++...+.. .
T Consensus 552 QLSK~~sQ-----------------------------------------------------------------------~ 560 (733)
T KOG0650|consen 552 QLSKRKSQ-----------------------------------------------------------------------S 560 (733)
T ss_pred eccccccc-----------------------------------------------------------------------C
Confidence 65432100 0
Q ss_pred cceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEE
Q 013545 299 RATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFD 377 (441)
Q Consensus 299 ~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd 377 (441)
.+.-..+.|.++.|+|...+|..++.. .||+||+..+....... ........+++.+.|..+++++. ..+--+|
T Consensus 561 PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~----tg~kwiS~msihp~GDnli~gs~d~k~~WfD 635 (733)
T KOG0650|consen 561 PFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLL----TGSKWISSMSIHPNGDNLILGSYDKKMCWFD 635 (733)
T ss_pred chhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHh----cCCeeeeeeeecCCCCeEEEecCCCeeEEEE
Confidence 011123558889999999998887754 69999998753211100 01122345677888887777765 4566667
Q ss_pred cc-CCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 378 IW-SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 378 ~~-~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
+. +.+..++++-|.+.|.+|+|++.-.+++||+.|+++.|+-
T Consensus 636 ldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 636 LDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred cccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 73 3467789999999999999999999999999999999984
No 176
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.9e-16 Score=144.38 Aligned_cols=168 Identities=23% Similarity=0.365 Sum_probs=123.2
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
...++||+|.|+||.|+ .+|.+|+|||.|-.+.|||....+. +..+ ..||+..|.++.|.|..
T Consensus 43 E~eL~GH~GCVN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~Kl------------lhsI----~TgHtaNIFsvKFvP~t 105 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWN-ADGELLASGSDDTRLIVWDPFEYKL------------LHSI----STGHTANIFSVKFVPYT 105 (758)
T ss_pred hhhhccccceecceeec-CCCCEEeecCCcceEEeecchhcce------------eeee----ecccccceeEEeeeccC
Confidence 34678999999999998 5788999999999999999863321 1122 23899999999998865
Q ss_pred C-CEEEEEeCCCcEEEEECCCCe----------EEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-
Q 013545 116 T-GLFVTGSYDHYVKVWDTNCTR----------VVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI- 182 (441)
Q Consensus 116 ~-~~l~sgs~D~~i~iWd~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~- 182 (441)
+ .+++||+.|..|+++|+..-+ ....+.+ ...+-.++..+.++ ..+-+++.||.|+-+|+.....
T Consensus 106 nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--htfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 106 NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--HTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC--ceEEEecCCcceeeecccCCccC
Confidence 4 467899999999999987421 1111111 12344455555443 5788999999999999976321
Q ss_pred ---------eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545 183 ---------SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 183 ---------~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~ 222 (441)
+..+.+..-...|++.+|..+++|+.|+.|--.|+||.|.
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 1112233345679999999999999999999999999763
No 177
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=3.9e-14 Score=126.62 Aligned_cols=242 Identities=17% Similarity=0.246 Sum_probs=166.1
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
...++.+.|+ .+...|..|+.||. ++|+.......-. . ..-...|..+.|+. .++|-.
T Consensus 5 ~~ti~~~~~N-qd~~~lsvGs~~Gy-k~~~~~~~~k~~~---~--------------~~~~~~IvEmLFSS---SLvaiV 62 (391)
T KOG2110|consen 5 KPTINFIGFN-QDSTLLSVGSKDGY-KIFSCSPFEKCFS---K--------------DTEGVSIVEMLFSS---SLVAIV 62 (391)
T ss_pred Ccceeeeeec-cceeEEEccCCCce-eEEecCchHHhhc---c--------------cCCCeEEEEeeccc---ceeEEE
Confidence 3567777787 45667777888775 7888764432100 0 00111233445543 366655
Q ss_pred eCCC--cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec---CCCCCeEEEE
Q 013545 123 SYDH--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS---GHRDGIMTVE 197 (441)
Q Consensus 123 s~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~---~h~~~v~~v~ 197 (441)
+.+. .+++.+++.+..+..+.++..+.++.+.. ..|+++-. ..|+|||+++-+++.++. .+...+.+++
T Consensus 63 ~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr-----~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 63 SIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR-----KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred ecCCCceEEEEEcccCceEEEEecCCceEEEEEcc-----ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeec
Confidence 5554 49999999988888888888888777664 24555544 459999999999888765 4566677777
Q ss_pred EecCCCcEEEEeec-CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 198 WSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 198 fsp~~~~~l~s~s~-Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
+++.+-++..=++. .|.|.+||+.+......
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~------------------------------------------------ 168 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNT------------------------------------------------ 168 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccceeeeE------------------------------------------------
Confidence 77766565444444 48999999865322111
Q ss_pred ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCc-EEEeeCCCCCceeeeeeeEEeccCcceE
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR-IRLWDVESGRNTLVNFETVRLQTSKPIQ 355 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 355 (441)
..+|.+++.+|+|+++|++|||+|..|| ||++.+..++.. ...+.
T Consensus 169 -----------------------I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl----~eFRR------- 214 (391)
T KOG2110|consen 169 -----------------------INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL----YEFRR------- 214 (391)
T ss_pred -----------------------EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe----eeeeC-------
Confidence 2479999999999999999999999998 688888776531 11110
Q ss_pred EEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 356 LATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
|-. .-.|.+++|+||+++|+..|.-+||.|+.++.-...
T Consensus 215 -------------------------G~~-------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~ 253 (391)
T KOG2110|consen 215 -------------------------GTY-------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNN 253 (391)
T ss_pred -------------------------Cce-------eeEEEEEEECCCCCeEEEecCCCeEEEEEecccccC
Confidence 000 123889999999999999999999999998765533
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=3.6e-15 Score=146.08 Aligned_cols=254 Identities=17% Similarity=0.208 Sum_probs=173.7
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-CCCEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DTGLFVT 121 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~~l~s 121 (441)
...|.|+.|+|.+..+|+.|..+|.|.+||+..+..... .. .......|..++..+.|... .+.-|+|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-----s~------ls~~~~sh~~~v~~vvW~~~~~~~~f~s 310 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-----SG------LSALEVSHSEPVTAVVWLQNEHNTEFFS 310 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-----cc------cccccccCCcCeEEEEEeccCCCCceEE
Confidence 478999999998889999999999999999976543110 00 01123468889998888542 1245999
Q ss_pred EeCCCcEEEEECCCCeE------EEEEe-------cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-------
Q 013545 122 GSYDHYVKVWDTNCTRV------VMNFK-------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA------- 181 (441)
Q Consensus 122 gs~D~~i~iWd~~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~------- 181 (441)
+|.||.|..|+++.-.. ..... ....+..+.|.+.. ...+..|+..|.|..-+.....
T Consensus 311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~--p~~FiVGTe~G~v~~~~r~g~~~~~~~~~ 388 (555)
T KOG1587|consen 311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD--PNHFIVGTEEGKVYKGCRKGYTPAPEVSY 388 (555)
T ss_pred EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC--CceEEEEcCCcEEEEEeccCCcccccccc
Confidence 99999999998753221 11111 11224455555543 3468889999999875443322
Q ss_pred -eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545 182 -ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259 (441)
Q Consensus 182 -~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (441)
....+..|.+.|.++.++|-+..+|.|++ |-+|+||.... ... +.
T Consensus 389 ~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~P----------------l~---------------- 435 (555)
T KOG1587|consen 389 KGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASP----------------LL---------------- 435 (555)
T ss_pred cccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCc----------------ch----------------
Confidence 12355678999999999999887777776 99999997541 100 00
Q ss_pred CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCc
Q 013545 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRN 338 (441)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~ 338 (441)
....+...|++++|||... .++++..||.|.+||+.....
T Consensus 436 ---------------------------------------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 436 ---------------------------------------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred ---------------------------------------hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence 0112345699999999875 577888899999999975321
Q ss_pred eeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545 339 TLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418 (441)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW 418 (441)
. |+ .+..-+....+.+.|++.|+.|+.|...|+|.+|
T Consensus 477 ~-------------Pv------------------------------~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 477 E-------------PV------------------------------LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred C-------------Cc------------------------------ccccccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 1 10 0001123446788899999999999999999999
Q ss_pred CCCCCC
Q 013545 419 CPSRHI 424 (441)
Q Consensus 419 ~~~~~~ 424 (441)
+++...
T Consensus 514 ~l~~~l 519 (555)
T KOG1587|consen 514 KLSESL 519 (555)
T ss_pred EcCchh
Confidence 997544
No 179
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.67 E-value=2e-15 Score=138.07 Aligned_cols=208 Identities=24% Similarity=0.315 Sum_probs=151.5
Q ss_pred cCcccceeEEEEeeCCC-CEEEEEeCCCcEEEEECCCCeE----EEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545 100 HGHKYAISSAIWYPVDT-GLFVTGSYDHYVKVWDTNCTRV----VMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~-~~l~sgs~D~~i~iWd~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~ 173 (441)
+-|...|.++.|+|... .++|+|..-|+|=+||+.+.+. +..+ .+.++|..+.|+|... ..+.+.|.||+|+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~--s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT--SQIYSSSYDGTIR 260 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh--hheeeeccCceee
Confidence 35778899999999766 7889999999999999953221 1222 3456788888988654 3566788999999
Q ss_pred EEECCCCceeeeec--CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545 174 LCDIASGAISQTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG 251 (441)
Q Consensus 174 vwdl~~~~~~~~l~--~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (441)
+-|++++..-..+. .-.....++.|+.+...+ +.+..=|-..+||+|+++.-.
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~v-l~~~~~G~f~~iD~R~~~s~~------------------------ 315 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSV-LFGDNVGNFNVIDLRTDGSEY------------------------ 315 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCccE-EEeecccceEEEEeecCCccc------------------------
Confidence 99999876433333 344556778888877655 455555689999998653100
Q ss_pred ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEE
Q 013545 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRL 330 (441)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~ 330 (441)
-...-|...|++|+++|... +|||+|.|++++|
T Consensus 316 ----------------------------------------------~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kI 349 (498)
T KOG4328|consen 316 ----------------------------------------------ENLRLHKKKITSVALNPVCPWFLATASLDQTAKI 349 (498)
T ss_pred ----------------------------------------------hhhhhhhcccceeecCCCCchheeecccCcceee
Confidence 00123555799999999764 6899999999999
Q ss_pred eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee
Q 013545 331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG 410 (441)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s 410 (441)
||++...... + | ......|...|.+..|||++..|+|.+
T Consensus 350 WD~R~l~~K~----------s-p------------------------------~lst~~HrrsV~sAyFSPs~gtl~TT~ 388 (498)
T KOG4328|consen 350 WDLRQLRGKA----------S-P------------------------------FLSTLPHRRSVNSAYFSPSGGTLLTTC 388 (498)
T ss_pred eehhhhcCCC----------C-c------------------------------ceecccccceeeeeEEcCCCCceEeec
Confidence 9998643210 0 0 011134899999999999999999999
Q ss_pred cCCcEEEeCCC
Q 013545 411 NDRQILVWCPS 421 (441)
Q Consensus 411 ~D~~i~vW~~~ 421 (441)
.|..|||||.+
T Consensus 389 ~D~~IRv~dss 399 (498)
T KOG4328|consen 389 QDNEIRVFDSS 399 (498)
T ss_pred cCCceEEeecc
Confidence 99999999984
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=5.1e-16 Score=151.20 Aligned_cols=274 Identities=18% Similarity=0.306 Sum_probs=185.7
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
+.||..+|+|..|+. .+.+++||+.|.-++||..+++.+. ..-.||.+.|+.++.+. +.-+
T Consensus 186 LlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~l-----------------As~rGhs~ditdlavs~-~n~~ 246 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCL-----------------ASCRGHSGDITDLAVSS-NNTM 246 (1113)
T ss_pred HHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhh-----------------ccCCCCccccchhccch-hhhh
Confidence 568999999999985 5889999999999999997766542 12358999999999876 4668
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee---ec-CCCCCe
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT---LS-GHRDGI 193 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~---l~-~h~~~v 193 (441)
+|++|.|..||+|.+.++.++..+. +.|.+.+++|+|.. +.+.||++++||..--..+.. ++ .-.+-+
T Consensus 247 iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~ 319 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLV 319 (1113)
T ss_pred hhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCcccccce
Confidence 9999999999999999998876554 57889999999964 567899999999861111111 11 123556
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
.++.|...+.. ++|++.|+.-+.|.+....+
T Consensus 320 ~s~~~~~~~~~-f~Tgs~d~ea~n~e~~~l~~------------------------------------------------ 350 (1113)
T KOG0644|consen 320 DSILFENNGDR-FLTGSRDGEARNHEFEQLAW------------------------------------------------ 350 (1113)
T ss_pred eeeeccccccc-cccccCCcccccchhhHhhh------------------------------------------------
Confidence 77778777764 68999999988887642110
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~ 352 (441)
|...+.-+.++.| ..+.+++-.+-++++|++.++... +....+...
T Consensus 351 -----------------------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~----H~l~ghsd~ 397 (1113)
T KOG0644|consen 351 -----------------------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL----HNLMGHSDE 397 (1113)
T ss_pred -----------------------------hccceEEEeccccccccceeeeeeeEeeeeecccchhh----hhhcccccc
Confidence 0000111111111 246667777888999998877421 111111222
Q ss_pred ceEEEeeC-CCcEEEEeC-CCceEEEEccCCceEeee-cccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 353 PIQLATTQ-DPAVVFVPC-MTAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 353 ~~~~~~~~-~~~~~~~~~-~~~~~~wd~~~~~~~~~l-~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
...+-+.| ++.+...++ .+..-+||+|.|...+.+ .|| ..+.+.+||+||+.++-...-|.+.|...-
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccC
Confidence 22233333 222333333 257889999999876644 454 557888999999998876666777776543
No 181
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1e-13 Score=136.56 Aligned_cols=303 Identities=17% Similarity=0.229 Sum_probs=194.9
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCC--CcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQR--ATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
-|.-.+++.+++| +++++|+|..||.|.+|.--. +..+. ...++=|...|.++.|++ +|.+
T Consensus 203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t---------------~t~lHWH~~~V~~L~fS~-~G~~ 265 (792)
T KOG1963|consen 203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSET---------------CTLLHWHHDEVNSLSFSS-DGAY 265 (792)
T ss_pred hhcccceeEEecc-ccceEEEeccCCcEEEEecccccccccc---------------ceEEEecccccceeEEec-CCce
Confidence 3666789999997 588999999999999996432 21110 011234778999999987 7999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC----------
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG---------- 188 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~---------- 188 (441)
|+|||+.+.+-+|.+.+++.-..-.+.+++..+.+++++. +.+....|+.|.+-...+-+...++.|
T Consensus 266 LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~---~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~ 342 (792)
T KOG1963|consen 266 LLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSD---LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKT 342 (792)
T ss_pred EeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCC---eEEEEecCceEEEEeccchhhhhhccCccCCCccccc
Confidence 9999999999999999988433335678899999998653 566677899999998766544333332
Q ss_pred -CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCC
Q 013545 189 -HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSAN 267 (441)
Q Consensus 189 -h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (441)
..+-.+.+.++|.-+ .++=.+..|.|++||+-+...+..++......
T Consensus 343 ~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~------------------------------- 390 (792)
T KOG1963|consen 343 RPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY------------------------------- 390 (792)
T ss_pred cccccceeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeecc-------------------------------
Confidence 244467888998433 35667889999999987655443322100000
Q ss_pred CCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec--------CC--cEEEeeCCCCC
Q 013545 268 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS--------DS--RIRLWDVESGR 337 (441)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~--------D~--~i~~wd~~~~~ 337 (441)
..+ ...+...+++++.+.+|.+++|+-. |+ .+|+|-.....
T Consensus 391 ----------------------~~~-------~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 391 ----------------------SDG-------DVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ----------------------cCC-------cceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 000 0012345777888888888877532 32 57788766543
Q ss_pred ceeeeeeeEEecc--CcceEEEe-eCCCc-EEEEe-CCCceEEEEccC----------CceEeeecccccceEEEEEcCC
Q 013545 338 NTLVNFETVRLQT--SKPIQLAT-TQDPA-VVFVP-CMTAVKAFDIWS----------GKTCLTFRGHYEYVNCCCFSSQ 402 (441)
Q Consensus 338 ~~~~~~~~~~~~~--~~~~~~~~-~~~~~-~~~~~-~~~~~~~wd~~~----------~~~~~~l~gh~~~v~~v~fspd 402 (441)
.... +.+....+ ...+..++ .+... ..+++ .++.+++|-... +.+...-.-|..++..++||.|
T Consensus 442 kt~~-L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 442 KTFI-LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred ceeE-EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 3221 22222222 11122222 22221 33344 557899997622 1222222238999999999999
Q ss_pred CCeEEEeecCCcEEEeCCCC-CCCC
Q 013545 403 DQELYTGGNDRQILVWCPSR-HISD 426 (441)
Q Consensus 403 ~~~l~s~s~D~~i~vW~~~~-~~~~ 426 (441)
| .++++|.|++|.+||..+ ..+.
T Consensus 521 G-slla~s~~~~Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 521 G-SLLAVSFDDTITIWDYDTKNELL 544 (792)
T ss_pred C-cEEEEecCCEEEEecCCChhhhh
Confidence 9 566688899999999988 4433
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=3.5e-15 Score=129.14 Aligned_cols=228 Identities=21% Similarity=0.324 Sum_probs=157.4
Q ss_pred EecCCeeEEEeeccCCC--CccEEEEEeCCCcEEEEECCC--Cce--eee-----ecCCCCCeEEEEEecCCCcEEEEee
Q 013545 142 FKMPGKVYRTAMSPLAA--SHMLIAAGTEDVQVRLCDIAS--GAI--SQT-----LSGHRDGIMTVEWSTSSEWILVTGG 210 (441)
Q Consensus 142 ~~~~~~~~~~~~~~~~~--~~~~las~s~d~~I~vwdl~~--~~~--~~~-----l~~h~~~v~~v~fsp~~~~~l~s~s 210 (441)
+.++-++..+.|.|+.. ...+||+++ ..+|+|.+.. ++. ... -..+.+++++..|+.-...++.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 34555666777777653 235677654 4799999874 221 111 2356788999999877777889999
Q ss_pred cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccC
Q 013545 211 CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH 290 (441)
Q Consensus 211 ~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (441)
-|-+..|||+.++... .
T Consensus 171 iDTTCTiWdie~~~~~---------------------------------------------------------~------ 187 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSG---------------------------------------------------------T------ 187 (364)
T ss_pred ccCeEEEEEEeecccc---------------------------------------------------------c------
Confidence 9999999999764100 0
Q ss_pred CCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee-CCCcEEEEe
Q 013545 291 PGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT-QDPAVVFVP 368 (441)
Q Consensus 291 ~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 368 (441)
....+.+|..+|..|+|..++. .+||.|+||.||+||++........++.-. ......+++.. .|..++++-
T Consensus 188 -----vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~-~~~pLlRLswnkqDpnymATf 261 (364)
T KOG0290|consen 188 -----VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS-PSTPLLRLSWNKQDPNYMATF 261 (364)
T ss_pred -----eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC-CCCcceeeccCcCCchHHhhh
Confidence 0012457999999999999764 689999999999999987653322222100 01222344444 345555443
Q ss_pred CC--CceEEEEccC-CceEeeecccccceEEEEEcCCC-CeEEEeecCCcEEEeCCCCCCCC-------CccCCccCCcC
Q 013545 369 CM--TAVKAFDIWS-GKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRHISD-------GVDAGPMQDQD 437 (441)
Q Consensus 369 ~~--~~~~~wd~~~-~~~~~~l~gh~~~v~~v~fspd~-~~l~s~s~D~~i~vW~~~~~~~~-------~~~~~~~~~~~ 437 (441)
.. ..|.+.|+.. ...+.+|++|.+.|+.++|.|.. ..|+|||.|..+.+||++.--.. --.+|-+.+|.
T Consensus 262 ~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi 341 (364)
T KOG0290|consen 262 AMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQI 341 (364)
T ss_pred hcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeee
Confidence 33 4788899865 45678999999999999999974 56999999999999999854441 12267788888
Q ss_pred CCC
Q 013545 438 NWS 440 (441)
Q Consensus 438 ~~~ 440 (441)
.|+
T Consensus 342 ~Ws 344 (364)
T KOG0290|consen 342 QWS 344 (364)
T ss_pred eec
Confidence 886
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.3e-15 Score=141.16 Aligned_cols=213 Identities=19% Similarity=0.257 Sum_probs=139.0
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
+.+|.++|.|+++. .+++++.||+-||+|+.|++...-......... +...+..||+++|+.+++++ ..++
T Consensus 340 fraH~gPVl~v~v~-~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~-------vl~~~l~Ghtdavw~l~~s~-~~~~ 410 (577)
T KOG0642|consen 340 FRAHEGPVLCVVVP-SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPS-------VLSGTLLGHTDAVWLLALSS-TKDR 410 (577)
T ss_pred EecccCceEEEEec-CCceEEEeeccCceeeeeccCCCCCcccccCcc-------hhccceeccccceeeeeecc-cccc
Confidence 45999999999996 578899999999999999875221111000000 01234569999999999987 5678
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEec---CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC------
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH------ 189 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h------ 189 (441)
|++|+.|+|+|+|+.....+ .+|.. .+....+.+..... ...+++ ..-+.-.+.+.+.+...+.+...
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~-a~~~~s-~~~~~~~~~~~ev~s~~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRP-AHSLAS-FRFGYTSIDDMEVVSDLLIFESSASPGPR 487 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchh-Hhhhhh-cccccccchhhhhhhheeeccccCCCccc
Confidence 99999999999999876555 22322 12222222222110 011111 11122223333444333333211
Q ss_pred -CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545 190 -RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG 268 (441)
Q Consensus 190 -~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (441)
...+.-+..+|... +.+++..|++|+++|..+++.+.
T Consensus 488 ~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~----------------------------------------- 525 (577)
T KOG0642|consen 488 RYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILH----------------------------------------- 525 (577)
T ss_pred ccCccceEEecCCCC-eeEecccCCceecccccccccch-----------------------------------------
Confidence 13355677788876 67899999999999987653211
Q ss_pred CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545 269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~ 335 (441)
...+|...|+++++.|+|.+|++++.|+++++|.+..
T Consensus 526 ------------------------------s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 526 ------------------------------SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ------------------------------heeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 0236778899999999999999999999999998754
No 184
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.3e-14 Score=125.48 Aligned_cols=198 Identities=16% Similarity=0.160 Sum_probs=137.8
Q ss_pred eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceee
Q 013545 148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR 227 (441)
Q Consensus 148 ~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~ 227 (441)
..++.|++.+ .+||+|+.||.|-+||+.|....+.+.+|.-+|++++||++|+ .|+|+|.|..|++||+..+.++.
T Consensus 26 a~~~~Fs~~G---~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWG---DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEeccCc---ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC-EeeeecCCceeEEEeccCCCcee
Confidence 4566777765 4899999999999999999998899999999999999999997 57899999999999999876543
Q ss_pred EeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCe
Q 013545 228 VLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAV 307 (441)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 307 (441)
.+. ..++|
T Consensus 102 rir------------------------------------------------------------------------f~spv 109 (405)
T KOG1273|consen 102 RIR------------------------------------------------------------------------FDSPV 109 (405)
T ss_pred EEE------------------------------------------------------------------------ccCcc
Confidence 321 12345
Q ss_pred EEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEe
Q 013545 308 TGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCL 385 (441)
Q Consensus 308 ~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~ 385 (441)
+.+.|+|-.. ..++.=-+..-.+-++...+........-.-....+....+.+.|.+++++.. +.+.++|..+.+++.
T Consensus 110 ~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~va 189 (405)
T KOG1273|consen 110 WGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVA 189 (405)
T ss_pred ceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeee
Confidence 5556665332 12222222223333333221110000000000001111235677888888876 578899999998888
Q ss_pred eecccc-cceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 386 TFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 386 ~l~gh~-~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
.++--. ..|..+.|+..|+.|+.-..|+.||.++++
T Consensus 190 s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 190 SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred eeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 777555 678999999999999999999999999886
No 185
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=1.1e-13 Score=140.37 Aligned_cols=170 Identities=18% Similarity=0.252 Sum_probs=113.8
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~ 120 (441)
.|.+.|+.++.++..+.+++|||.||+||+||+.+... +....++...-. --...+.++...+ .++.+|
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~-----~~~s~rS~ltys-----~~~sr~~~vt~~~-~~~~~A 1114 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG-----EGGSARSELTYS-----PEGSRVEKVTMCG-NGDQFA 1114 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhc-----CcceeeeeEEEe-----ccCCceEEEEecc-CCCeEE
Confidence 47889999999876668999999999999999875432 111111111110 0112344444443 578999
Q ss_pred EEeCCCcEEEEECCCCe-------EEEEE--ecCCeeEEE-eeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec--C
Q 013545 121 TGSYDHYVKVWDTNCTR-------VVMNF--KMPGKVYRT-AMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS--G 188 (441)
Q Consensus 121 sgs~D~~i~iWd~~~~~-------~~~~~--~~~~~~~~~-~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~--~ 188 (441)
.++.||.|++.++.-.. +.... ...|.+.+. ++.....+ ..++.+...+.|..||+.+...+.+++ -
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc-eeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999886411 11111 123333332 23332333 477788888999999998876665554 3
Q ss_pred CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545 189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (441)
Q Consensus 189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~ 223 (441)
..+.|+++..+|.+.| +++|...|.+-+||+|-+
T Consensus 1194 ~hG~vTSi~idp~~~W-lviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNW-LVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred cccceeEEEecCCceE-EEEecCCceEEEEEeecC
Confidence 4577999999999886 689999999999999843
No 186
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=3.2e-14 Score=130.37 Aligned_cols=245 Identities=13% Similarity=0.165 Sum_probs=157.0
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcc-cceeEEEEeeCCCCEEEEE
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~l~sg 122 (441)
.+|.+++|.|.+...+++++.-.-+..||+.+.+..... + .+|+. ..+..-.+++ +++++|..
T Consensus 258 fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~-------~--------~~g~e~~~~e~FeVSh-d~~fia~~ 321 (514)
T KOG2055|consen 258 FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK-------P--------PYGVEEKSMERFEVSH-DSNFIAIA 321 (514)
T ss_pred CccceeeecCCCceEEEecccceEEEEeecccccccccc-------C--------CCCcccchhheeEecC-CCCeEEEc
Confidence 588899999754448999999999999999876542211 1 11222 1122233344 78899999
Q ss_pred eCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC-CeEEEEEecC
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD-GIMTVEWSTS 201 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~-~v~~v~fsp~ 201 (441)
|..|-|.+--..+++.+..++++|.+..+.|+.++ . .|.+++.+|.|.+||++...+++.+....+ --++++.+++
T Consensus 322 G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds--k-~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~n 398 (514)
T KOG2055|consen 322 GNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS--K-ELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLN 398 (514)
T ss_pred ccCceEEeehhhhhhhhheeeeccEEeeEEEecCC--c-EEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCC
Confidence 99999999999999999999999999999999664 3 455556688999999999988887764322 1256777788
Q ss_pred CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
+. +||+||..|-|.|||..+. +. ...|.+....+. .....+.+.+.++..+.+
T Consensus 399 g~-ylA~GS~~GiVNIYd~~s~--~~---------s~~PkPik~~dN---------------Ltt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 399 GS-YLATGSDSGIVNIYDGNSC--FA---------STNPKPIKTVDN---------------LTTAITSLQFNHDAQILA 451 (514)
T ss_pred Cc-eEEeccCcceEEEeccchh--hc---------cCCCCchhhhhh---------------hheeeeeeeeCcchhhhh
Confidence 87 5799999999999996542 11 001111110000 001112223333333322
Q ss_pred CCCccc-----ccCCCccccccc---ceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545 282 KGSVRQ-----RLHPGMLSSQDR---ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 282 ~~~~~~-----~~~~~~~~~~~~---~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~ 334 (441)
..+-.. .++-...+.... .....+.|+||+|||.|.++|.|..+|++.+|.+.
T Consensus 452 iaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 452 IASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 211110 011000000000 01223569999999999999999999999999764
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=4.4e-14 Score=138.69 Aligned_cols=236 Identities=17% Similarity=0.188 Sum_probs=156.4
Q ss_pred CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCC---CcEEEEECCCCeEEEE
Q 013545 65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMN 141 (441)
Q Consensus 65 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D---~~i~iWd~~~~~~~~~ 141 (441)
+..|.|||...... +....|...+....|+| |+++|+.++.+ .+|.+||+.+++....
T Consensus 183 ~~~i~i~d~dg~~~------------------~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l 243 (429)
T PRK01742 183 PYEVRVADYDGFNQ------------------FIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVV 243 (429)
T ss_pred eEEEEEECCCCCCc------------------eEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEE
Confidence 57899999753321 01124666788888987 78888887764 3699999988765333
Q ss_pred EecCCeeEEEeeccCCCCccEEEEEeCCCcEE--EEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545 142 FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVR--LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219 (441)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~--vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD 219 (441)
....+......++|++. .++.+.+.++.+. +||+.+++. ..+..+...+.+..|+|+++.+++++..++..+||+
T Consensus 244 ~~~~g~~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 244 ASFRGHNGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred ecCCCccCceeECCCCC--EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence 33444455677887643 3444445677655 457766654 556677778889999999987666666788999998
Q ss_pred cCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccccccc
Q 013545 220 IRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDR 299 (441)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (441)
+........
T Consensus 321 ~~~~~~~~~----------------------------------------------------------------------- 329 (429)
T PRK01742 321 MSASGGGAS----------------------------------------------------------------------- 329 (429)
T ss_pred EECCCCCeE-----------------------------------------------------------------------
Confidence 753210000
Q ss_pred ceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEc
Q 013545 300 ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDI 378 (441)
Q Consensus 300 ~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~ 378 (441)
...+.+ ..++|+|||++|+..+.++ +.+||+.+++..... . . .......++|++..++..+ .+..++|++
T Consensus 330 ~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt-~--~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 330 LVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS-S--T---FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred EecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec-C--C---CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 001111 2357999999998887765 666999887532110 1 1 1112456899998877654 466777876
Q ss_pred c--CCceEeeecccccceEEEEEcCC
Q 013545 379 W--SGKTCLTFRGHYEYVNCCCFSSQ 402 (441)
Q Consensus 379 ~--~~~~~~~l~gh~~~v~~v~fspd 402 (441)
. +|+....+.+|.+.+..++|||-
T Consensus 401 ~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 401 VSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EECCCCceEEccCCCCCCCCcccCCC
Confidence 4 58888899999999999999984
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.62 E-value=1.9e-14 Score=124.61 Aligned_cols=212 Identities=19% Similarity=0.250 Sum_probs=153.6
Q ss_pred CCCCceeEEEccCCCC----cEEEEeeCCCcEEEEECCCCc-ccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 41 PHKGSINSLQVDLTEE----RYLLSGASDSSVAVYDVQRAT-DYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~----~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
.|.-+++.+.|.|+.. ++|||. +..+|+|.+...+ .......+.. .....+..++++..|...+
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~---------~kns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNN---------NKNSEFCAPLTSFDWNEVD 162 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhcc---------CcccccCCcccccccccCC
Confidence 5788999999998642 345554 3579999986432 1111111111 1123466678888888888
Q ss_pred CCEEEEEeCCCcEEEEECCCCeE----EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc---eeeeecC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRV----VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSG 188 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~---~~~~l~~ 188 (441)
..++.++|-|.|..|||++++.. .+.+-+...|+.++|... +..++||.+.||++|+|||+.-+ .+..-..
T Consensus 163 p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~--s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG--SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccC--ccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence 89999999999999999998732 233456778999999873 45689999999999999997654 2222222
Q ss_pred CCCCeEEEEEecCCCcEEEEeecC-CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCC
Q 013545 189 HRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSAN 267 (441)
Q Consensus 189 h~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (441)
...+..-++|++....++|+-..| ..|.|-|+|....
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t------------------------------------------ 278 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT------------------------------------------ 278 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc------------------------------------------
Confidence 245677889998888788887766 5799999985310
Q ss_pred CCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCC
Q 013545 268 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~ 335 (441)
...++..|.+.|++++|.|.. ..|+|++.|..+-+||+..
T Consensus 279 ----------------------------pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 279 ----------------------------PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ----------------------------ceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 011345799999999999985 5799999999999999975
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.6e-14 Score=131.20 Aligned_cols=197 Identities=22% Similarity=0.299 Sum_probs=139.4
Q ss_pred eEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCC
Q 013545 47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDH 126 (441)
Q Consensus 47 ~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~ 126 (441)
-+++|+. ++..|++|+.||++|||+....... .....|..+|.++.|+| |++.|+|-+.|
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~-----------------l~e~~~~~eV~DL~FS~-dgk~lasig~d- 207 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTI-----------------LEEIAHHAEVKDLDFSP-DGKFLASIGAD- 207 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhh-----------------hhhHhhcCccccceeCC-CCcEEEEecCC-
Confidence 6788885 5678999999999999995433211 11236888999999987 89999999999
Q ss_pred cEEEEECCCCeEEEEEecCCe---eEEEeeccCCCCccE--EEEEeCCCcEEEEECCCCce------eeeecCCCCCeEE
Q 013545 127 YVKVWDTNCTRVVMNFKMPGK---VYRTAMSPLAASHML--IAAGTEDVQVRLCDIASGAI------SQTLSGHRDGIMT 195 (441)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--las~s~d~~I~vwdl~~~~~------~~~l~~h~~~v~~ 195 (441)
..+||++.++..+......++ ...+.|..+.....+ +++-..-+.|+.||+....- .+.+.. ...|++
T Consensus 208 ~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSs 286 (398)
T KOG0771|consen 208 SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISS 286 (398)
T ss_pred ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCccee
Confidence 999999999976655442222 223344444322232 33334455677777643221 111222 346899
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
++.+++|+ +++-|+.||.|-|++..+-.++...
T Consensus 287 l~VS~dGk-f~AlGT~dGsVai~~~~~lq~~~~v---------------------------------------------- 319 (398)
T KOG0771|consen 287 LAVSDDGK-FLALGTMDGSVAIYDAKSLQRLQYV---------------------------------------------- 319 (398)
T ss_pred EEEcCCCc-EEEEeccCCcEEEEEeceeeeeEee----------------------------------------------
Confidence 99999998 5789999999999998653322211
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~ 335 (441)
..+|...|+.|.|+||.+++++-+.|.+..+..+.-
T Consensus 320 ------------------------k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 320 ------------------------KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ------------------------hhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 246888999999999999999999999999887653
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3.9e-14 Score=132.37 Aligned_cols=124 Identities=22% Similarity=0.420 Sum_probs=105.4
Q ss_pred ccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCCcEEE
Q 013545 97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRL 174 (441)
Q Consensus 97 ~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~~I~v 174 (441)
+.+.||++-|+|+.|.. +|.+|+|||+|..+.|||....++++.+.. ...++++.|.|... +.++++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn-nriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN-NRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC-CeEEEeccCcceEEE
Confidence 34569999999999987 899999999999999999988888777653 45578888888754 567889999999999
Q ss_pred EECCCC----------ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545 175 CDIASG----------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 175 wdl~~~----------~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~ 222 (441)
+|+... +....+..|...|.-++-.|+++..|.++++||+||-+|+|.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 999752 234456789999999999999988899999999999999985
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.54 E-value=7e-14 Score=132.72 Aligned_cols=217 Identities=17% Similarity=0.252 Sum_probs=144.1
Q ss_pred eCCCcEEEEECCCCeEEE-----EEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-------eeeeecCCC
Q 013545 123 SYDHYVKVWDTNCTRVVM-----NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-------ISQTLSGHR 190 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-------~~~~l~~h~ 190 (441)
|.-|.|-|++++..-.+- .+.-..-+..+.|.|+. ...||+++.|+.|++|.+..+- +-..+.+|.
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD--~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~ 677 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFD--DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG 677 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCC--hHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence 456899999987533221 11112236667777764 4679999999999999997652 345788999
Q ss_pred CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG 270 (441)
Q Consensus 191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (441)
..|.++.|+|=-..+|++++-|.+|++||+++.+..
T Consensus 678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~-------------------------------------------- 713 (1012)
T KOG1445|consen 678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY-------------------------------------------- 713 (1012)
T ss_pred ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh--------------------------------------------
Confidence 999999999976567899999999999999864311
Q ss_pred ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 350 (441)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~ 350 (441)
.++.+|.+-|.+++|||||+.+++-+.||+|++|+..++.... ++......
T Consensus 714 ---------------------------~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv--~Eg~gpvg 764 (1012)
T KOG1445|consen 714 ---------------------------SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV--YEGKGPVG 764 (1012)
T ss_pred ---------------------------heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc--ccCCCCcc
Confidence 1245799999999999999999999999999999998765322 11111111
Q ss_pred CcceEEEeeCCCcEEEEeCCC-----ceEEEEccCC--ceEeeecccccceEEEEE-------cCCCC-eEEEeecCCcE
Q 013545 351 SKPIQLATTQDPAVVFVPCMT-----AVKAFDIWSG--KTCLTFRGHYEYVNCCCF-------SSQDQ-ELYTGGNDRQI 415 (441)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~-----~~~~wd~~~~--~~~~~l~gh~~~v~~v~f-------spd~~-~l~s~s~D~~i 415 (441)
.....+.+.-|+.++++.+.. .+.+||..+- ..+.+. +.+++- .+|.. .++||--|..|
T Consensus 765 tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~------~lDvaps~LvP~YD~Ds~~lfltGKGD~~v 838 (1012)
T KOG1445|consen 765 TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQ------VLDVAPSPLVPHYDYDSNVLFLTGKGDRFV 838 (1012)
T ss_pred CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceee------eecccCccccccccCCCceEEEecCCCceE
Confidence 222345555677766665442 2444444221 111111 122221 23544 46688889999
Q ss_pred EEeCC
Q 013545 416 LVWCP 420 (441)
Q Consensus 416 ~vW~~ 420 (441)
..+-+
T Consensus 839 ~~yEv 843 (1012)
T KOG1445|consen 839 NMYEV 843 (1012)
T ss_pred EEEEe
Confidence 88854
No 192
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=7.7e-12 Score=123.54 Aligned_cols=297 Identities=16% Similarity=0.137 Sum_probs=200.2
Q ss_pred EEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC--CEEEEEeCCC
Q 013545 49 LQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT--GLFVTGSYDH 126 (441)
Q Consensus 49 l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~~l~sgs~D~ 126 (441)
-.|++ ++++++-. .+..|+||.+.++.... ...+|...+..+.+.+... .++.+++.||
T Consensus 22 avfSn-D~k~l~~~-~~~~V~VyS~~Tg~~i~-----------------~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G 82 (792)
T KOG1963|consen 22 AVFSN-DAKFLFLC-TGNFVKVYSTATGECIT-----------------SLEDHTAPLTSVIVLPSSENANYLIVCSLDG 82 (792)
T ss_pred ccccc-CCcEEEEe-eCCEEEEEecchHhhhh-----------------hcccccCccceeeecCCCccceEEEEEecCc
Confidence 45774 57766554 55789999998876421 2347888888888866544 5778999999
Q ss_pred cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEE-EEeCCC------------cEEEEECCCC--ceeeeecCCCC
Q 013545 127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIA-AGTEDV------------QVRLCDIASG--AISQTLSGHRD 191 (441)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-s~s~d~------------~I~vwdl~~~--~~~~~l~~h~~ 191 (441)
+|++||-..+..+.++....++....+.+.......++ .+..|. +++-+.+.+- .....+.+|..
T Consensus 83 ~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~ 162 (792)
T KOG1963|consen 83 TIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE 162 (792)
T ss_pred cEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC
Confidence 99999999999999988877776665543211111122 222222 1122222111 11112233333
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
-.++.+++.+.. ..--.+..+.+|+..+.. ....
T Consensus 163 -~~~I~~~~~ge~--~~i~~~~~~~~~~v~~~~--~~~~----------------------------------------- 196 (792)
T KOG1963|consen 163 -PKSIVDNNSGEF--KGIVHMCKIHIYFVPKHT--KHTS----------------------------------------- 196 (792)
T ss_pred -CccEEEcCCceE--EEEEEeeeEEEEEecccc--eeec-----------------------------------------
Confidence 467888888763 333456678888876432 0000
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 351 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~ 351 (441)
.......|.-.+++.++||+++++|+|..||+|.+|.=...+...........+..
T Consensus 197 ------------------------~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~ 252 (792)
T KOG1963|consen 197 ------------------------SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD 252 (792)
T ss_pred ------------------------cchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence 00111235556899999999999999999999999953331111122345677888
Q ss_pred cceEEEeeCCCcEEEEeCCC-ceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccC
Q 013545 352 KPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDA 430 (441)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~-~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~ 430 (441)
....++++.+|.++++++.. .+-+|.+.+++ .+-|.--.++|..+.+|||+.+.+..-+|..|.+=..++-.....+.
T Consensus 253 ~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs 331 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS 331 (792)
T ss_pred ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc
Confidence 89999999999999999885 56789998887 44455567889999999999999988889999999888777777777
Q ss_pred CccCC
Q 013545 431 GPMQD 435 (441)
Q Consensus 431 ~~~~~ 435 (441)
|....
T Consensus 332 gi~~~ 336 (792)
T KOG1963|consen 332 GIKPP 336 (792)
T ss_pred CccCC
Confidence 76544
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.3e-12 Score=130.79 Aligned_cols=258 Identities=16% Similarity=0.217 Sum_probs=157.9
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEE-eeCCCCEEEEE
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW-YPVDTGLFVTG 122 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-~~~~~~~l~sg 122 (441)
..-..+.|+|- ...++++.....|++||-+.++.+..- .........|+.+.+ ...|..++++|
T Consensus 1065 ~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~e~~~~l~~F--------------~n~~~~~t~Vs~l~liNe~D~aLlLta 1129 (1387)
T KOG1517|consen 1065 QPPKTLKFHPF-EPQIAAADDRERIRVWDWEKGRLLNGF--------------DNGAFPDTRVSDLELINEQDDALLLTA 1129 (1387)
T ss_pred CCCceeeecCC-CceeEEcCCcceEEEEecccCceeccc--------------cCCCCCCCccceeeeecccchhheeee
Confidence 33445667753 557888887888999999877654210 011123345666665 34456789999
Q ss_pred eCCCcEEEEEC-----CCCeEEEEEe-cCC----e-eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-CCC
Q 013545 123 SYDHYVKVWDT-----NCTRVVMNFK-MPG----K-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHR 190 (441)
Q Consensus 123 s~D~~i~iWd~-----~~~~~~~~~~-~~~----~-~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-~h~ 190 (441)
+.||.||||+- ...+.+.-+. +.+ . -..+.+.....+..++++| .-..|+|||.........+. +-.
T Consensus 1130 s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1130 SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCC
Confidence 99999999973 2223333222 111 0 0111122222234455544 46789999998877666654 344
Q ss_pred CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG 270 (441)
Q Consensus 191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (441)
.-|++++-+-....+++.|-.||+||+||.|....-..
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~------------------------------------------ 1246 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL------------------------------------------ 1246 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCcccc------------------------------------------
Confidence 45666654433334788999999999999885311000
Q ss_pred ccccCcccccCCCCcccccCCCcccccccceeeccC--eEEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeeeeeeEE
Q 013545 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA--VTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFETVR 347 (441)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~ 347 (441)
......|... |..+.+-+.|- .|++|+.||.|++||++.... ..+.++.
T Consensus 1247 --------------------------v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~--e~~~~iv 1298 (1387)
T KOG1517|consen 1247 --------------------------VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK--ETFLTIV 1298 (1387)
T ss_pred --------------------------ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc--cccceee
Confidence 0001234443 78888888765 499999999999999986311 0011100
Q ss_pred eccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 348 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
.-|+ ..+.++++..+++...+|+|+. +.|+||+.....+.
T Consensus 1299 --------------------------~~~~------------yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~ 1338 (1387)
T KOG1517|consen 1299 --------------------------AHWE------------YGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLN 1338 (1387)
T ss_pred --------------------------eccc------------cCccceeeeeccCCCeeeecCc-ceEEEEecChhhhc
Confidence 0010 0113788889999999999998 99999999766554
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.53 E-value=1.1e-13 Score=129.01 Aligned_cols=264 Identities=17% Similarity=0.220 Sum_probs=148.6
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccC------CCCccEEEEEeCCCcEEE
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL------AASHMLIAAGTEDVQVRL 174 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~las~s~d~~I~v 174 (441)
.|..-|.++.|.. ....+.+++++..++-||+.+.. ....+++........++. +.....++.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~-~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS-NEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccc-cceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 3555677777775 34444444444444455554333 222333222111122222 122346778889999988
Q ss_pred EECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545 175 CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS 254 (441)
Q Consensus 175 wdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (441)
.+- .++.-+.+..|.+.+.+-.|+|+|.. |+|+++||.|++|. |+|..-.++-+.... ..+....+...
T Consensus 90 l~k-~~rVE~sv~AH~~A~~~gRW~~dGtg-Llt~GEDG~iKiWS-rsGMLRStl~Q~~~~------v~c~~W~p~S~-- 158 (737)
T KOG1524|consen 90 LNK-SARVERSISAHAAAISSGRWSPDGAG-LLTAGEDGVIKIWS-RSGMLRSTVVQNEES------IRCARWAPNSN-- 158 (737)
T ss_pred ecc-cchhhhhhhhhhhhhhhcccCCCCce-eeeecCCceEEEEe-ccchHHHHHhhcCce------eEEEEECCCCC--
Confidence 874 45555678899999999999999986 68999999999997 444221111110000 00000000000
Q ss_pred CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545 255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~ 334 (441)
......|..+.+-| +.+ -....+..+|.+-|.+++|++....|+||+.|-+.++||-.
T Consensus 159 -------~vl~c~g~h~~IKp-------------L~~--n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 159 -------SIVFCQGGHISIKP-------------LAA--NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred -------ceEEecCCeEEEee-------------ccc--ccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 00000000000000 000 01122467899999999999999999999999999999976
Q ss_pred CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc
Q 013545 335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ 414 (441)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~ 414 (441)
.. +.+ . -..+.-.+..+++.|+ +..++.+-.+.| --+-..+.|..++|||||..++.|...|.
T Consensus 217 G~-~Lf---~-S~~~ey~ITSva~npd-~~~~v~S~nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 217 GA-NLF---T-SAAEEYAITSVAFNPE-KDYLLWSYNTAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred Cc-ccc---c-CChhccceeeeeeccc-cceeeeeeeeee-----------ecCCCccceEEEEEcCCCceeeccccCce
Confidence 42 211 1 1112233456777777 333333223333 11234577999999999999998777766
Q ss_pred EE
Q 013545 415 IL 416 (441)
Q Consensus 415 i~ 416 (441)
+.
T Consensus 280 v~ 281 (737)
T KOG1524|consen 280 LI 281 (737)
T ss_pred EE
Confidence 43
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2.3e-13 Score=123.83 Aligned_cols=203 Identities=18% Similarity=0.254 Sum_probs=141.9
Q ss_pred eEEEEeeCCCCEEEEEeCCCcEEEEECCCCeE-EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545 107 SSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV-VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT 185 (441)
Q Consensus 107 ~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~ 185 (441)
.++++.. ++..+++|+.|+++|+|+.-+... +....+++.+.++.|++++ .+|++-+.| ..+||+.++|..+..
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg---k~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG---KFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC---cEEEEecCC-ceEEEEeccCchhhh
Confidence 3455554 788999999999999999544443 3344567889999999975 378888888 999999999976665
Q ss_pred ec--CCCCCeEEEEEecCC---Cc-EEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545 186 LS--GHRDGIMTVEWSTSS---EW-ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259 (441)
Q Consensus 186 l~--~h~~~v~~v~fsp~~---~~-~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (441)
.. +-......+.|+.++ .. ++++-..-+.|+.||+....--..+
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l------------------------------ 272 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL------------------------------ 272 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc------------------------------
Confidence 54 233445677887765 22 3333344467777776421000000
Q ss_pred CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce
Q 013545 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT 339 (441)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~ 339 (441)
... . .......|.++++|+||++++-|+.||.|-+++..+.+..
T Consensus 273 ------------------------~~~-----------~-~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~ 316 (398)
T KOG0771|consen 273 ------------------------RLR-----------K-KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL 316 (398)
T ss_pred ------------------------chh-----------h-hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee
Confidence 000 0 0111235899999999999999999999999988754311
Q ss_pred eeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 340 LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
. ..-+.|..-|+.+.|+||.+++++.+.|.+++|-.
T Consensus 317 ~--------------------------------------------~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 317 Q--------------------------------------------YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred E--------------------------------------------eehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 0 11145888999999999999999999999999988
Q ss_pred CCCCC
Q 013545 420 PSRHI 424 (441)
Q Consensus 420 ~~~~~ 424 (441)
++-..
T Consensus 353 l~vd~ 357 (398)
T KOG0771|consen 353 LAVDK 357 (398)
T ss_pred Eeecc
Confidence 87543
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.3e-12 Score=128.35 Aligned_cols=210 Identities=15% Similarity=0.085 Sum_probs=136.1
Q ss_pred CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC---CCcEEEEECCCCce--eeeecCCCCCeEEEEEe
Q 013545 125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---DVQVRLCDIASGAI--SQTLSGHRDGIMTVEWS 199 (441)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~---d~~I~vwdl~~~~~--~~~l~~h~~~v~~v~fs 199 (441)
+.+|.+||...............+....++|++. .|+..+. +..|++||+++++. +..+.+|. ..++|+
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~---~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGS---KLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFS 256 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCC---EEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeEC
Confidence 5789999986554322223345577788888753 4454443 24699999998864 33344443 468999
Q ss_pred cCCCcEEEEeecCCcEEEEEcC--CCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545 200 TSSEWILVTGGCDGAIRFWDIR--RAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 277 (441)
Q Consensus 200 p~~~~~l~s~s~Dg~I~iWD~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
|+++.++++.+.+|.++||.+. .+.. ..
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~------------------------------------------------- 286 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTP-SQ------------------------------------------------- 286 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCe-Ee-------------------------------------------------
Confidence 9998765555678888877543 2110 00
Q ss_pred cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545 278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL 356 (441)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (441)
...+...+.+.+|+|||+.|+..+ .++..+||++.......... .... ...
T Consensus 287 ----------------------lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-----~~~~-~~~ 338 (429)
T PRK01742 287 ----------------------LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-----GGRG-YSA 338 (429)
T ss_pred ----------------------eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-----cCCC-CCc
Confidence 011223456789999999877554 67888888765322111111 1111 235
Q ss_pred EeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 357 ATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
.++|++..++..+...+..||+.+++.......+ ....+.|+|||++|+.++.++.+++|.+
T Consensus 339 ~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 339 QISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred cCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 6889999887776677777999888764333332 2467889999999999999998887764
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.52 E-value=1e-11 Score=118.06 Aligned_cols=232 Identities=14% Similarity=0.224 Sum_probs=146.6
Q ss_pred EEEEeCCCcEEEEECCC-Ce--EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC-CCce--eeeecCCCCC
Q 013545 119 FVTGSYDHYVKVWDTNC-TR--VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-SGAI--SQTLSGHRDG 192 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~-~~~~--~~~l~~h~~~ 192 (441)
+++.+.|+.|.+||+.+ ++ .+..+...+....+.++|+. ..+.+++..++.|.+|++. +++. +.... ..+.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~--~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~ 81 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDK--RHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGS 81 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCC--CEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCC
Confidence 44557899999999964 33 44555554556667777754 2344445568899999996 3433 22222 2345
Q ss_pred eEEEEEecCCCcEEEEeecCCcEEEEEcCCCcee-eEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF-RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
...+.|+|+++.++++.-.++.|.+||+...+.. ...
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~------------------------------------------ 119 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI------------------------------------------ 119 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce------------------------------------------
Confidence 6789999999976666556899999998632100 000
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceee-eeeeEEe-
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLV-NFETVRL- 348 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~-~~~~~~~- 348 (441)
. ...+......++++|+|+++. +...+++|.+||+.+...... .......
T Consensus 120 ---------------~------------~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~ 172 (330)
T PRK11028 120 ---------------Q------------IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV 172 (330)
T ss_pred ---------------e------------eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC
Confidence 0 000011245678999999874 556679999999976321100 0001111
Q ss_pred ccCcceEEEeeCCCcEEEEeCC--CceEEEEccC--Cc--eEeeeccc------ccceEEEEEcCCCCeEEEeec-CCcE
Q 013545 349 QTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWS--GK--TCLTFRGH------YEYVNCCCFSSQDQELYTGGN-DRQI 415 (441)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~--~~--~~~~l~gh------~~~v~~v~fspd~~~l~s~s~-D~~i 415 (441)
....+..+++++++.++++... ..+.+|++.. ++ ...++..+ ......++|+|||++|+++.. +++|
T Consensus 173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I 252 (330)
T PRK11028 173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI 252 (330)
T ss_pred CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE
Confidence 1244667889999999988754 6899999973 33 23333322 223457999999999998754 7899
Q ss_pred EEeCCCC
Q 013545 416 LVWCPSR 422 (441)
Q Consensus 416 ~vW~~~~ 422 (441)
.+|+++.
T Consensus 253 ~v~~i~~ 259 (330)
T PRK11028 253 SVFSVSE 259 (330)
T ss_pred EEEEEeC
Confidence 9998854
No 198
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.52 E-value=1.5e-13 Score=124.20 Aligned_cols=157 Identities=24% Similarity=0.391 Sum_probs=120.0
Q ss_pred ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe-------EEE--EEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEE
Q 013545 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-------VVM--NFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRL 174 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~-------~~~--~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~v 174 (441)
+|..+.+...+.+.+|||+.|..||+|-+.... +.. .+. +...++.+.|++.+ .+||||+.++.|.+
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g---elLASg~D~g~v~l 91 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG---ELLASGGDGGEVFL 91 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc---CeeeecCCCceEEE
Confidence 566777766555599999999999999875432 111 111 23457777777754 48999999999999
Q ss_pred EECC--------C-----C---ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccC
Q 013545 175 CDIA--------S-----G---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR 238 (441)
Q Consensus 175 wdl~--------~-----~---~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~ 238 (441)
|-.. + . ...+.+.+|...|..++|+|++. ++++++.|+++++||++.+.....
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~---------- 160 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAI---------- 160 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEee----------
Confidence 9876 3 1 23457889999999999999987 579999999999999987643322
Q ss_pred CCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE
Q 013545 239 RPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY 318 (441)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 318 (441)
...|...|..++|.|-+++
T Consensus 161 -------------------------------------------------------------~~dh~~yvqgvawDpl~qy 179 (434)
T KOG1009|consen 161 -------------------------------------------------------------LDDHEHYVQGVAWDPLNQY 179 (434)
T ss_pred -------------------------------------------------------------ccccccccceeecchhhhh
Confidence 2246677889999999999
Q ss_pred EEEeecCCcEEEeeCCCC
Q 013545 319 LLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 319 l~sgs~D~~i~~wd~~~~ 336 (441)
+++=+.|+..+.+.+...
T Consensus 180 v~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 180 VASKSSDRHPEGFSAKLK 197 (434)
T ss_pred hhhhccCcccceeeeeee
Confidence 999999997777776543
No 199
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.51 E-value=9.5e-13 Score=112.78 Aligned_cols=216 Identities=16% Similarity=0.206 Sum_probs=141.4
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccC----CCCceeccce-----------eEE------------
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE----GGGHIAKHRS-----------VFV------------ 93 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~----~~~~~~~~~~-----------~~~------------ 93 (441)
-|...|+.+..-| + +.|.|-+.|..+.+|++....... ..+++...+. ..+
T Consensus 54 ~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~ 131 (323)
T KOG0322|consen 54 FGRLFITNLQSIP-N-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQ 131 (323)
T ss_pred hccceeeceeecC-C-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhh
Confidence 4567899999875 3 469999999999999987532100 0001100000 000
Q ss_pred ---------eecccccCcccceeEEEEeeCCCC--EEEEEeCCCcEEEEECCCCeEEEEEec-----------CCeeEEE
Q 013545 94 ---------VDKQHEHGHKYAISSAIWYPVDTG--LFVTGSYDHYVKVWDTNCTRVVMNFKM-----------PGKVYRT 151 (441)
Q Consensus 94 ---------~~~~~~~~h~~~V~~~~~~~~~~~--~l~sgs~D~~i~iWd~~~~~~~~~~~~-----------~~~~~~~ 151 (441)
+......+..+.+.|..+-..++. +++.|-.++.+-+||+.++..+.+++. .+++.++
T Consensus 132 D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl 211 (323)
T KOG0322|consen 132 DGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL 211 (323)
T ss_pred ccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceee
Confidence 000111234455655543222333 456778899999999999866655442 3445566
Q ss_pred eeccCCCCccEEEEEeCCCcEEEEECCCC--cee--eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceee
Q 013545 152 AMSPLAASHMLIAAGTEDVQVRLCDIASG--AIS--QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR 227 (441)
Q Consensus 152 ~~~~~~~~~~~las~s~d~~I~vwdl~~~--~~~--~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~ 227 (441)
.+.+... .=++|+.+..+.+|+++.. .+. .++.--...|..+..-||++ +|||+++|+.||+|..++...+.
T Consensus 212 dyas~~~---rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLA 287 (323)
T KOG0322|consen 212 DYASSCD---RGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLA 287 (323)
T ss_pred eechhhc---CCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchh
Confidence 5554322 2346778888999998754 221 12222234578899999998 79999999999999988754332
Q ss_pred EeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCe
Q 013545 228 VLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAV 307 (441)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 307 (441)
+ ++-|.+.|
T Consensus 288 V-----------------------------------------------------------------------LkyHsagv 296 (323)
T KOG0322|consen 288 V-----------------------------------------------------------------------LKYHSAGV 296 (323)
T ss_pred h-----------------------------------------------------------------------hhhhhcce
Confidence 2 23477889
Q ss_pred EEEEEccCCCEEEEeecCCcEEEeeC
Q 013545 308 TGLKVTEDGMYLLSAGSDSRIRLWDV 333 (441)
Q Consensus 308 ~~l~~s~dg~~l~sgs~D~~i~~wd~ 333 (441)
++|+|+|+...+|++|.|.+|.+|++
T Consensus 297 n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999986
No 200
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=4.6e-13 Score=118.64 Aligned_cols=174 Identities=13% Similarity=0.152 Sum_probs=119.3
Q ss_pred ceeeecCCCCceeEEEccCC-CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccc-ceeEEEEe
Q 013545 35 YKEIVSPHKGSINSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY-AISSAIWY 112 (441)
Q Consensus 35 ~~~~~~~H~~~V~~l~~s~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~ 112 (441)
.-+.+.+|...++.+.|... ....+.||+.||+|++||+....... + ....+|.+ +..++...
T Consensus 62 ~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a----------~-----~~~~~~~~~~f~~ld~n 126 (376)
T KOG1188|consen 62 LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA----------R-----ISWTQQSGTPFICLDLN 126 (376)
T ss_pred hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh----------h-----eeccCCCCCcceEeecc
Confidence 34556789999999999743 34679999999999999987543211 0 11123332 23333322
Q ss_pred eCCCCEEEEEeC----CCcEEEEECCCCeE-EEEE--ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc---e
Q 013545 113 PVDTGLFVTGSY----DHYVKVWDTNCTRV-VMNF--KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---I 182 (441)
Q Consensus 113 ~~~~~~l~sgs~----D~~i~iWd~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~---~ 182 (441)
- ...++++|.. |-.|.+||++..+. +..+ .+...+.++.|+|.. ..+|++||.||-|.+||++... .
T Consensus 127 c-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~--pnlLlSGSvDGLvnlfD~~~d~EeDa 203 (376)
T KOG1188|consen 127 C-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD--PNLLLSGSVDGLVNLFDTKKDNEEDA 203 (376)
T ss_pred C-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC--CCeEEeecccceEEeeecCCCcchhh
Confidence 1 3445666543 67899999987765 4433 245678899999864 4699999999999999997543 1
Q ss_pred eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCcee
Q 013545 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF 226 (441)
Q Consensus 183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~ 226 (441)
+...-.|...|.++.|..++-..+.+-+...+..+|+++.+.+.
T Consensus 204 L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 204 LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 22223577889999999886212566778899999999887643
No 201
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=7.9e-12 Score=117.85 Aligned_cols=288 Identities=18% Similarity=0.233 Sum_probs=183.2
Q ss_pred CCCCceeEEEccCCCCcE-EEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcc-cceeEEEEeeCCCCE
Q 013545 41 PHKGSINSLQVDLTEERY-LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGL 118 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~ 118 (441)
.|...-+.|..+| +|+| ++||-.--.|++||+..... .. ..|. ..|......+.|-..
T Consensus 49 e~p~ast~ik~s~-DGqY~lAtG~YKP~ikvydlanLSL--------------KF-----ERhlDae~V~feiLsDD~SK 108 (703)
T KOG2321|consen 49 EMPTASTRIKVSP-DGQYLLATGTYKPQIKVYDLANLSL--------------KF-----ERHLDAEVVDFEILSDDYSK 108 (703)
T ss_pred CCccccceeEecC-CCcEEEEecccCCceEEEEccccee--------------ee-----eecccccceeEEEeccchhh
Confidence 5778899999996 5777 58888888999999864421 01 1122 123333333323223
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f 198 (441)
++---.|++|-+..-- |. -....++....++.++-... .++.+| ....|.-++|+.|..+..+.-..+.++++..
T Consensus 109 ~v~L~~DR~IefHak~-G~-hy~~RIP~~GRDm~y~~~sc--Dly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~i 183 (703)
T KOG2321|consen 109 SVFLQNDRTIEFHAKY-GR-HYRTRIPKFGRDMKYHKPSC--DLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSI 183 (703)
T ss_pred heEeecCceeeehhhc-Ce-eeeeecCcCCccccccCCCc--cEEEee-cCcceEEEEccccccccccccccccceeeee
Confidence 3333456666554221 11 11122232233344433222 233333 3457999999999999999888899999999
Q ss_pred ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccc
Q 013545 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR 278 (441)
Q Consensus 199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (441)
++-.. +|++|+.||.|.+||.|....+..++.....
T Consensus 184 n~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v------------------------------------------- 219 (703)
T KOG2321|consen 184 NEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSV------------------------------------------- 219 (703)
T ss_pred cCccc-eEEecccCceEEEecchhhhhheeeeccccc-------------------------------------------
Confidence 99875 7888989999999999875443333221100
Q ss_pred ccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEe
Q 013545 279 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT 358 (441)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (441)
. .++ .......|+++.|+.+|-.++.|+.+|.+.|||+++.++.+..-+ .....+..+.+
T Consensus 220 -------~--s~p--------g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh---~~e~pi~~l~~ 279 (703)
T KOG2321|consen 220 -------N--SHP--------GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH---GYELPIKKLDW 279 (703)
T ss_pred -------C--CCc--------cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc---CCccceeeecc
Confidence 0 000 001124599999999999999999999999999998775432111 11222334444
Q ss_pred eCC--CcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545 359 TQD--PAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418 (441)
Q Consensus 359 ~~~--~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW 418 (441)
.+. ...+++.-...+++||-.+|+....+.-- ..++++++-|++.++++|-++..+..+
T Consensus 280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 280 QDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cccCCCceEEecchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeE
Confidence 333 23344433357999999999988776633 449999999999999999888766554
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.48 E-value=1.2e-13 Score=126.90 Aligned_cols=194 Identities=19% Similarity=0.340 Sum_probs=149.7
Q ss_pred eEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCC
Q 013545 47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDH 126 (441)
Q Consensus 47 ~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~ 126 (441)
+.+.++ .+|++|+-|+.-|.+..+|-.+... +..+.+ ...|.++.|.+ .+.++......
T Consensus 133 Y~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L---------~~Ei~v---------~Etv~Dv~~LH--neq~~AVAQK~ 191 (545)
T KOG1272|consen 133 YHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKL---------HFEINV---------METVRDVTFLH--NEQFFAVAQKK 191 (545)
T ss_pred eeeeec-CCccEEEecCCccceeeeeccccee---------eeeeeh---------hhhhhhhhhhc--chHHHHhhhhc
Confidence 578887 5789999999999999999765431 001111 12455677765 23455555778
Q ss_pred cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEE
Q 013545 127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWIL 206 (441)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l 206 (441)
-+.|||- .|..++.++-...+..+.|-|. +.+|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|-+. ++
T Consensus 192 y~yvYD~-~GtElHClk~~~~v~rLeFLPy---HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vi 266 (545)
T KOG1272|consen 192 YVYVYDN-NGTELHCLKRHIRVARLEFLPY---HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VI 266 (545)
T ss_pred eEEEecC-CCcEEeehhhcCchhhhcccch---hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-eE
Confidence 8999995 4666777776677888888775 45899999999999999999999988888888888888889876 67
Q ss_pred EEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcc
Q 013545 207 VTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVR 286 (441)
Q Consensus 207 ~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (441)
-.|...|+|.+|...+...
T Consensus 267 h~GhsnGtVSlWSP~skeP------------------------------------------------------------- 285 (545)
T KOG1272|consen 267 HLGHSNGTVSLWSPNSKEP------------------------------------------------------------- 285 (545)
T ss_pred EEcCCCceEEecCCCCcch-------------------------------------------------------------
Confidence 8899999999998653210
Q ss_pred cccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 287 QRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 287 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
......|.++|.+|++.++|.|+||.+.|..++|||++.-.
T Consensus 286 ----------LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 286 ----------LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred ----------HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 01134789999999999999999999999999999998643
No 203
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=3.3e-12 Score=128.17 Aligned_cols=196 Identities=16% Similarity=0.233 Sum_probs=149.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCC
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG 192 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~ 192 (441)
+..+++.+..+..+.+||...+..+......... +.....-++.....+++|+.-+.|.+|+..--+....+.||.+.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 4557888888899999999887777666554332 22333334445668999999999999999733333368899999
Q ss_pred eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (441)
+.++.|+-+|.+ ++|.|+|.++|+|++.+.+...
T Consensus 178 iF~i~~s~dg~~-i~s~SdDRsiRlW~i~s~~~~~--------------------------------------------- 211 (967)
T KOG0974|consen 178 IFSIVTSLDGRY-IASVSDDRSIRLWPIDSREVLG--------------------------------------------- 211 (967)
T ss_pred eEEEEEccCCcE-EEEEecCcceeeeecccccccC---------------------------------------------
Confidence 999999999975 7999999999999998642110
Q ss_pred ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352 (441)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~ 352 (441)
...-+|...|..++|+|+ +++|++.|-++++|+..-
T Consensus 212 -------------------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~----------------- 247 (967)
T KOG0974|consen 212 -------------------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG----------------- 247 (967)
T ss_pred -------------------------cccccccceeEEEEeccc--eeEEeccceEEEEEeccc-----------------
Confidence 012368889999999999 999999999999995432
Q ss_pred ceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccc-cceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545 353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~-~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~ 429 (441)
..+.++.+|. +.|+.++..++.-.++|++.|+.+++|+.....+.+..
T Consensus 248 -----------------------------~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~~ 296 (967)
T KOG0974|consen 248 -----------------------------TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGHV 296 (967)
T ss_pred -----------------------------ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccce
Confidence 1122344554 45999999999999999999999999999877766543
No 204
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=1.7e-11 Score=110.76 Aligned_cols=238 Identities=13% Similarity=0.171 Sum_probs=165.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEE------ec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc----eee
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNF------KM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA----ISQ 184 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~----~~~ 184 (441)
.+.+..++.|..+.+.++....+.... .+ .+++..+.. .+-.|.+|-.+|.+++|..+.+. .+.
T Consensus 69 tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-----~dg~Litc~~sG~l~~~~~k~~d~hss~l~ 143 (412)
T KOG3881|consen 69 TEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-----ADGTLITCVSSGNLQVRHDKSGDLHSSKLI 143 (412)
T ss_pred eeEeeccccCcccccccccCCccccccccccccccccccccchhh-----cCCEEEEEecCCcEEEEeccCCccccccce
Confidence 345556656666766666544433221 00 112222211 12356677889999999998543 222
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEeecC--CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545 185 TLSGHRDGIMTVEWSTSSEWILVTGGCD--GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ 262 (441)
Q Consensus 185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~D--g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (441)
.+..+ ..+..+.-+|..++++++|+.. ..+++||+... ..++.....+ ..
T Consensus 144 ~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvp------nD------------------- 195 (412)
T KOG3881|consen 144 KLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVP------ND------------------- 195 (412)
T ss_pred eeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCC------Cc-------------------
Confidence 33323 4566777788888888889999 89999998754 2222211000 00
Q ss_pred cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC--CCEEEEeecCCcEEEeeCCCCCcee
Q 013545 263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED--GMYLLSAGSDSRIRLWDVESGRNTL 340 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~sgs~D~~i~~wd~~~~~~~~ 340 (441)
.+. .--.-+++++.|-|. ...||+++.-+.+|+||+..++...
T Consensus 196 ---------------------~L~--------------LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV 240 (412)
T KOG3881|consen 196 ---------------------RLG--------------LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV 240 (412)
T ss_pred ---------------------ccc--------------ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce
Confidence 000 001235778889988 8899999999999999999887654
Q ss_pred eeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEee-ecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545 341 VNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLT-FRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~-l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW 418 (441)
. .+.+.......+...|++..++++.. ..+..||+..++++.. |.|-.+.|.++..+|.+++|++||-|+.+||+
T Consensus 241 ~---~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIh 317 (412)
T KOG3881|consen 241 A---QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIH 317 (412)
T ss_pred e---EeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEe
Confidence 3 33445566677888899999888765 6899999999998876 99999999999999999999999999999999
Q ss_pred CCCCCC
Q 013545 419 CPSRHI 424 (441)
Q Consensus 419 ~~~~~~ 424 (441)
|+.+.+
T Consensus 318 D~ktrk 323 (412)
T KOG3881|consen 318 DIKTRK 323 (412)
T ss_pred ecccch
Confidence 999844
No 205
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.2e-10 Score=98.99 Aligned_cols=231 Identities=15% Similarity=0.158 Sum_probs=154.2
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEECCCC---------e-EEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545 110 IWYPVDTGLFVTGSYDHYVKVWDTNCT---------R-VVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178 (441)
Q Consensus 110 ~~~~~~~~~l~sgs~D~~i~iWd~~~~---------~-~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~ 178 (441)
+++| .+++|+.|..+|+|.+..+++- + ++..+ -++++++.+.++. ..|.+|+ ||.|+=|.-+
T Consensus 17 a~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-----~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 17 AISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-----DFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred hhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-----hheeecc-CceEEEeeeh
Confidence 4555 4779999999999999987531 1 12221 2467788888873 2455654 5999988653
Q ss_pred CC------ceeee--ecCCC-----CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccc
Q 013545 179 SG------AISQT--LSGHR-----DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKR 245 (441)
Q Consensus 179 ~~------~~~~~--l~~h~-----~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (441)
.- +.+.. .+-|. ..|.++...|....+| .++.|+.+.-||+++++-.+.
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i~r~----------------- 151 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRIQRE----------------- 151 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEEEEE-----------------
Confidence 21 11111 12233 3578888888866554 555899999999988753332
Q ss_pred cccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC
Q 013545 246 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD 325 (441)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 325 (441)
..+|.+.|.+|.--.-...|.||+.|
T Consensus 152 ------------------------------------------------------~rGHtDYvH~vv~R~~~~qilsG~ED 177 (325)
T KOG0649|consen 152 ------------------------------------------------------YRGHTDYVHSVVGRNANGQILSGAED 177 (325)
T ss_pred ------------------------------------------------------EcCCcceeeeeeecccCcceeecCCC
Confidence 34788899999886666789999999
Q ss_pred CcEEEeeCCCCCceee--eeeeEEe-c-cCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcC
Q 013545 326 SRIRLWDVESGRNTLV--NFETVRL-Q-TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 401 (441)
Q Consensus 326 ~~i~~wd~~~~~~~~~--~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp 401 (441)
|++|+||+.+++.... .+..... . ......-+...+...++.+++..+.+|.+.+-+...+|. -..+|..|.|-.
T Consensus 178 GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfp-ipa~v~~v~F~~ 256 (325)
T KOG0649|consen 178 GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFP-IPARVHLVDFVD 256 (325)
T ss_pred ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEe-cccceeEeeeec
Confidence 9999999999874321 1111000 0 111222334445567777777899999998877766654 445588888875
Q ss_pred CCCeEEEeecCCcEEEeCCCC
Q 013545 402 QDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 402 d~~~l~s~s~D~~i~vW~~~~ 422 (441)
..++++|+.+.|.-|....
T Consensus 257 --d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 257 --DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred --ceEEEeccccceeeeeecc
Confidence 4688899999999998753
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.1e-10 Score=114.41 Aligned_cols=217 Identities=17% Similarity=0.191 Sum_probs=138.1
Q ss_pred cccceeEEEEeeCCCCEEEEEeC---CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC--cEEEEE
Q 013545 102 HKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCD 176 (441)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~sgs~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~--~I~vwd 176 (441)
+...+....|+| ||+.|+..+. +..|.+||+.+++........+......++|++. .++.+.+.++ .|.+||
T Consensus 197 ~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~--~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 197 SPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMD 273 (429)
T ss_pred CCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC--EEEEEEcCCCCcEEEEEE
Confidence 344567788887 7888876543 4579999998886544334445555677888653 3444444444 599999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC--CCceeeEeccCCccccCCCCcccccccccCccC
Q 013545 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR--RAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS 254 (441)
Q Consensus 177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (441)
+++++..+ +..+...+....|+|+++.++.+...++..+||.+. .+...+ +
T Consensus 274 ~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-l------------------------- 326 (429)
T PRK03629 274 LASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-I------------------------- 326 (429)
T ss_pred CCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-e-------------------------
Confidence 99887644 444455678899999998765554445666777443 211000 0
Q ss_pred CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC---CcEEEe
Q 013545 255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD---SRIRLW 331 (441)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D---~~i~~w 331 (441)
..+........|+|||++|+..+.+ ..|.+|
T Consensus 327 ----------------------------------------------t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 327 ----------------------------------------------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred ----------------------------------------------ecCCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence 0011123457899999998876544 358889
Q ss_pred eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-C---ceEEEEccCCceEeeecccccceEEEEEcC
Q 013545 332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-T---AVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 401 (441)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp 401 (441)
|+.+++... +. .........++||+..++..+. . .+.++++ +|.....+.+|.+.+...+|||
T Consensus 361 dl~~g~~~~--Lt----~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 361 DLATGGVQV--LT----DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ECCCCCeEE--eC----CCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 998775321 11 0111224568899998776543 2 2455666 5667788888999999999998
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=2.9e-11 Score=109.00 Aligned_cols=256 Identities=11% Similarity=0.132 Sum_probs=167.9
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECC------CCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN------CTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDV 170 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~ 170 (441)
..+|.+.|+++.|+. ++..|+|||+|..+++|.+. +.+++..... ...+++++|.. .+..+.+|..++
T Consensus 52 ~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~---~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 52 VREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL---ENRFLYSGERWG 127 (609)
T ss_pred hhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc---CCeeEecCCCcc
Confidence 358999999999987 58899999999999999874 3344443332 24466666654 346789999999
Q ss_pred cEEEEECCCCceeeeec--CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccccc
Q 013545 171 QVRLCDIASGAISQTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKS 247 (441)
Q Consensus 171 ~I~vwdl~~~~~~~~l~--~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 247 (441)
+|...|+++.+.+..+. ...+.|..+..+|-.. +|++.+.++.|-+||+|... ....+.
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~----------------- 189 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVL----------------- 189 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceee-----------------
Confidence 99999999998877664 2345899999999865 78999999999999998421 000000
Q ss_pred cccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCC
Q 013545 248 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDS 326 (441)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~ 326 (441)
+........++-|+|-- .+|++.+..+
T Consensus 190 ----------------------------------------------------~AN~~~~F~t~~F~P~~P~Li~~~~~~~ 217 (609)
T KOG4227|consen 190 ----------------------------------------------------PANSGKNFYTAEFHPETPALILVNSETG 217 (609)
T ss_pred ----------------------------------------------------ecCCCccceeeeecCCCceeEEeccccC
Confidence 00011235567788875 4677888888
Q ss_pred cEEEeeCCCCCceeeeeeeEE-ecc--CcceEEEeeCCCcEEEEeCCC-ceEEEEccCCceEeeecccc-------cceE
Q 013545 327 RIRLWDVESGRNTLVNFETVR-LQT--SKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHY-------EYVN 395 (441)
Q Consensus 327 ~i~~wd~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~wd~~~~~~~~~l~gh~-------~~v~ 395 (441)
-+-+||+......+..+.... +++ ..-+...++++|+-+++.-.. ---+||+-+..+..--..|. ..+.
T Consensus 218 G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~K 297 (609)
T KOG4227|consen 218 GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIK 297 (609)
T ss_pred CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeee
Confidence 899999986543222111111 111 112345566776655443322 22456665544332222232 2367
Q ss_pred EEEEcCCCCeEEEeecCCcEEEeCCC-CCCCCCcc
Q 013545 396 CCCFSSQDQELYTGGNDRQILVWCPS-RHISDGVD 429 (441)
Q Consensus 396 ~v~fspd~~~l~s~s~D~~i~vW~~~-~~~~~~~~ 429 (441)
+++|--| ..++|||.|=.|.+|.++ .+.+.|+.
T Consensus 298 S~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~ 331 (609)
T KOG4227|consen 298 SMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFT 331 (609)
T ss_pred eeeeecc-eeeeccCcccceEEEecCCCccccCcc
Confidence 7888865 569999999999999776 34466644
No 208
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=2.7e-10 Score=111.75 Aligned_cols=217 Identities=11% Similarity=0.084 Sum_probs=133.1
Q ss_pred CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEE---eCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAG---TEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (441)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~---s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~ 202 (441)
..|.+||.............+.+....++|++. .|+.. ..+..|.+||+.+++... +....+.+..+.|+|+|
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~---~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDG 254 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCC---EEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCC
Confidence 368889886554333233445677888898753 34332 234579999999886432 22223334568999999
Q ss_pred CcEEEEeecCC--cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545 203 EWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280 (441)
Q Consensus 203 ~~~l~s~s~Dg--~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (441)
+.++++.+.+| .|.+||+.++...+..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt--------------------------------------------------- 283 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVT--------------------------------------------------- 283 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEcc---------------------------------------------------
Confidence 97766655555 4778887654321100
Q ss_pred CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC-Cc--EEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545 281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD-SR--IRLWDVESGRNTLVNFETVRLQTSKPIQLA 357 (441)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D-~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (441)
.+...+...+|+|||+.|+..+.+ +. |.++|+.++.... +...........
T Consensus 284 ---------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-----lt~~~~~~~~~~ 337 (429)
T PRK03629 284 ---------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-----ITWEGSQNQDAD 337 (429)
T ss_pred ---------------------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-----eecCCCCccCEE
Confidence 011234567899999998877654 44 4444666554211 111122233467
Q ss_pred eeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc---EEEeCCCCCCC
Q 013545 358 TTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ---ILVWCPSRHIS 425 (441)
Q Consensus 358 ~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~---i~vW~~~~~~~ 425 (441)
++||+..++.... ..+.+||+.+++.. .+... .......|||||++|+.++.|+. +.+|+++....
T Consensus 338 ~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 338 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence 8899988766432 35778898887643 33322 22456789999999998888764 67778765443
No 209
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.39 E-value=2.4e-11 Score=105.41 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=55.9
Q ss_pred cCeEEEEEccCCCEEEEeecC---CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCC
Q 013545 305 GAVTGLKVTEDGMYLLSAGSD---SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG 381 (441)
Q Consensus 305 ~~v~~l~~s~dg~~l~sgs~D---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~ 381 (441)
..++.|.|+|+|++|+.++.+ |.|.+||+.+.+..
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i------------------------------------------ 138 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI------------------------------------------ 138 (194)
T ss_pred CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe------------------------------------------
Confidence 346789999999999998754 56999998853311
Q ss_pred ceEeeecccccceEEEEEcCCCCeEEEeec------CCcEEEeCCCCCCCCC
Q 013545 382 KTCLTFRGHYEYVNCCCFSSQDQELYTGGN------DRQILVWCPSRHISDG 427 (441)
Q Consensus 382 ~~~~~l~gh~~~v~~v~fspd~~~l~s~s~------D~~i~vW~~~~~~~~~ 427 (441)
.++ .| ..+..++|||||++|+|+.. |..++||+....++..
T Consensus 139 ---~~~-~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 139 ---STF-EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred ---ecc-cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence 011 12 23789999999999998764 7899999997655443
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.39 E-value=1.2e-11 Score=118.40 Aligned_cols=236 Identities=19% Similarity=0.288 Sum_probs=161.3
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+.||...|+|++++ .+|+.++||+.|+.+.||+-+-. +-..+.|.+.|.|+.|.| -..
T Consensus 48 tLKgHKDtVycVAys-~dGkrFASG~aDK~VI~W~~klE-------------------G~LkYSH~D~IQCMsFNP-~~h 106 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYA-KDGKRFASGSADKSVIIWTSKLE-------------------GILKYSHNDAIQCMSFNP-ITH 106 (1081)
T ss_pred ccccccceEEEEEEc-cCCceeccCCCceeEEEeccccc-------------------ceeeeccCCeeeEeecCc-hHH
Confidence 456999999999998 57889999999999999985421 112357999999999988 466
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee---eeecCCCCCeE
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS---QTLSGHRDGIM 194 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~---~~l~~h~~~v~ 194 (441)
+|+||+.. ..-+|......+ ...+....+.++++..+ ..+++-|..||+|.+-+- +++.. ..--|..++|+
T Consensus 107 ~LasCsLs-dFglWS~~qK~V-~K~kss~R~~~CsWtnD---GqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiw 180 (1081)
T KOG1538|consen 107 QLASCSLS-DFGLWSPEQKSV-SKHKSSSRIICCSWTND---GQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIW 180 (1081)
T ss_pred Hhhhcchh-hccccChhhhhH-HhhhhheeEEEeeecCC---CcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCce
Confidence 89999875 467897765443 22333445666666664 458999999999999864 44432 23336789999
Q ss_pred EEEEecCCC----cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545 195 TVEWSTSSE----WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG 270 (441)
Q Consensus 195 ~v~fsp~~~----~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (441)
++.|+|+.. .+++...+..++.++.+.. +. +++.
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~----------Igk~------------------------------- 218 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQ----------IGKD------------------------------- 218 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEecc-ee----------eccc-------------------------------
Confidence 999999742 2455556666666665431 00 0000
Q ss_pred ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 350 (441)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~ 350 (441)
..-.-...++.+.++|.++..|+.|+.+++|.-+. ..+.++....
T Consensus 219 ------------------------------r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-----vrLGTvg~~D 263 (1081)
T KOG1538|consen 219 ------------------------------RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-----VRLGTVGEQD 263 (1081)
T ss_pred ------------------------------ccCCCCchhheeccCCcEEEEccCCCceEEEeecC-----eEEeeccccc
Confidence 00011245788999999999999999999995432 1123333334
Q ss_pred CcceEEEeeCCCcEEEEeCC-CceEEEE
Q 013545 351 SKPIQLATTQDPAVVFVPCM-TAVKAFD 377 (441)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd 377 (441)
..+.+++..|++..++.+|. +++-.|+
T Consensus 264 ~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 264 SWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred eeEEEEEEccCCceEEEEEccCeeehhh
Confidence 55677888899988888876 4555554
No 211
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.39 E-value=9.8e-11 Score=115.23 Aligned_cols=246 Identities=15% Similarity=0.159 Sum_probs=162.3
Q ss_pred CCcEEEEECCCC-eEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce--ee----eecCCCCCeEEEE
Q 013545 125 DHYVKVWDTNCT-RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI--SQ----TLSGHRDGIMTVE 197 (441)
Q Consensus 125 D~~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~--~~----~l~~h~~~v~~v~ 197 (441)
+..+-+|+++.. .+...+.....+.++.++|+.+ .+++.|+.+|+|.+||+..+.. .. ....|...++.+.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p--~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDP--NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCc--ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 347899999876 5566677778899999999754 6899999999999999987754 21 2346899999999
Q ss_pred EecCCC-cEEEEeecCCcEEEEEcCCCcee-eEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 198 WSTSSE-WILVTGGCDGAIRFWDIRRAGCF-RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 198 fsp~~~-~~l~s~s~Dg~I~iWD~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
|..+-. .-|+|+|.||.|..|+++.-.+- .....
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~-------------------------------------------- 334 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLL-------------------------------------------- 334 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhccc--------------------------------------------
Confidence 976522 22689999999999988743210 00000
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCcee----eeeeeEEecc
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTL----VNFETVRLQT 350 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~----~~~~~~~~~~ 350 (441)
....+. . ... .-...+++++|.+.. ..++.|+.+|.|.-=+-...+... ........+.
T Consensus 335 ----------~~~~~~----~-~~~-~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 335 ----------ESKKHK----G-QQS-SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred ----------cccccc----c-ccc-ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 000000 0 000 011247889999864 468889999988763332222111 1111112223
Q ss_pred CcceEEEeeCCCcEEEE-eCCCceEEEEcc-CCceEeeecccccceEEEEEcCCC-CeEEEeecCCcEEEeCCCCCCCCC
Q 013545 351 SKPIQLATTQDPAVVFV-PCMTAVKAFDIW-SGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRHISDG 427 (441)
Q Consensus 351 ~~~~~~~~~~~~~~~~~-~~~~~~~~wd~~-~~~~~~~l~gh~~~v~~v~fspd~-~~l~s~s~D~~i~vW~~~~~~~~~ 427 (441)
+....+..+|=...++. +++.++++|.-. ...++..+..+...|.+++|||-- ..++++..||.|-+||+.......
T Consensus 399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 33444555555554444 456799999887 667777888899999999999975 447788889999999998777665
Q ss_pred ccCCc
Q 013545 428 VDAGP 432 (441)
Q Consensus 428 ~~~~~ 432 (441)
+..=+
T Consensus 479 v~s~~ 483 (555)
T KOG1587|consen 479 VLSQK 483 (555)
T ss_pred ccccc
Confidence 54443
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.39 E-value=3.3e-10 Score=99.96 Aligned_cols=239 Identities=13% Similarity=0.253 Sum_probs=147.6
Q ss_pred eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE-EEeC
Q 013545 46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV-TGSY 124 (441)
Q Consensus 46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~-sgs~ 124 (441)
..+++|+. +. -..+.+.|...|||+++...+... .+...+- -.+..+.+- .++|| .||.
T Consensus 8 ~lsvs~NQ-D~-ScFava~~~Gfriyn~~P~ke~~~--------------r~~~~~G-~~~veMLfR---~N~laLVGGg 67 (346)
T KOG2111|consen 8 TLSVSFNQ-DH-SCFAVATDTGFRIYNCDPFKESAS--------------RQFIDGG-FKIVEMLFR---SNYLALVGGG 67 (346)
T ss_pred eeEEEEcc-CC-ceEEEEecCceEEEecCchhhhhh--------------hccccCc-hhhhhHhhh---hceEEEecCC
Confidence 34488874 33 355566777789999875332100 0000000 112222221 22333 3343
Q ss_pred C------CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC-CCceeeeecCC--CCCeEE
Q 013545 125 D------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-SGAISQTLSGH--RDGIMT 195 (441)
Q Consensus 125 D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~-~~~~~~~l~~h--~~~v~~ 195 (441)
+ ..|-|||=...+++.++...+++..+.+..+ .|++. ..+.|+||... +.+.++.+... +....+
T Consensus 68 ~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~-----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 68 SRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD-----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCS 141 (346)
T ss_pred CCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCC-----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEe
Confidence 3 5799999777788888888888888888764 34444 35789999987 44555555422 222222
Q ss_pred EEEecC-CCcEEEE-eecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 196 VEWSTS-SEWILVT-GGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 196 v~fsp~-~~~~l~s-~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
+ +|. ++.+||- |-.-|.|+|=|+...+.
T Consensus 142 ~--~~~~~k~~LafPg~k~GqvQi~dL~~~~~------------------------------------------------ 171 (346)
T KOG2111|consen 142 L--CPTSNKSLLAFPGFKTGQVQIVDLASTKP------------------------------------------------ 171 (346)
T ss_pred e--cCCCCceEEEcCCCccceEEEEEhhhcCc------------------------------------------------
Confidence 2 222 2233443 23346777777653110
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCc-EEEeeCCCCCceeeeeeeEEeccCc
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR-IRLWDVESGRNTLVNFETVRLQTSK 352 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~-i~~wd~~~~~~~~~~~~~~~~~~~~ 352 (441)
.......+|.+.|.+|+..-+|..|||+|..|| |||||..++.... ..+..
T Consensus 172 ---------------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~----E~RRG--- 223 (346)
T KOG2111|consen 172 ---------------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ----ELRRG--- 223 (346)
T ss_pred ---------------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee----eeecC---
Confidence 001124689999999999999999999999998 7899988875321 11100
Q ss_pred ceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
.....|.|++||||+.+|+.+|+.||+.|+.+....
T Consensus 224 ------------------------------------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 224 ------------------------------------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ------------------------------------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 022459999999999999999999999999876544
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.38 E-value=2.5e-10 Score=100.73 Aligned_cols=221 Identities=18% Similarity=0.274 Sum_probs=153.5
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
.+|+|.+|++ +...+|.+-+...|-||.......++. ..+...|...|+.+.|.| ..+.|+||+
T Consensus 11 ~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~--------------~htls~Hd~~vtgvdWap-~snrIvtcs 74 (361)
T KOG1523|consen 11 EPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEP--------------AHTLSEHDKIVTGVDWAP-KSNRIVTCS 74 (361)
T ss_pred CceeeeeecC-CCceEEeccCCceEEEEEecCCCCcee--------------ceehhhhCcceeEEeecC-CCCceeEcc
Confidence 6899999985 677899999999999998654433321 123446888999999988 577999999
Q ss_pred CCCcEEEEEC-CCCeE---EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee----eeecCCCCCeEE
Q 013545 124 YDHYVKVWDT-NCTRV---VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS----QTLSGHRDGIMT 195 (441)
Q Consensus 124 ~D~~i~iWd~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~----~~l~~h~~~v~~ 195 (441)
.|+.-.+|.. ..++- +..+.++.....+.++|.. +.+|+|+....|.||-++..+-- +.-+.+.+.|.+
T Consensus 75 ~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e---nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s 151 (361)
T KOG1523|consen 75 HDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE---NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS 151 (361)
T ss_pred CCCCccccccCCCCeeccceeEEEeccceeeEeecCcC---ceEEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence 9999999988 44432 2234456677788888854 57999999999999998765422 233467889999
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
++|+|++- +|+.||.|+.+|+|..- +...+.... +.+.....+.|..+
T Consensus 152 ldWhpnnV-LlaaGs~D~k~rVfSay----IK~Vdekpa-----------------------p~pWgsk~PFG~lm---- 199 (361)
T KOG1523|consen 152 LDWHPNNV-LLAAGSTDGKCRVFSAY----IKGVDEKPA-----------------------PTPWGSKMPFGQLM---- 199 (361)
T ss_pred eeccCCcc-eecccccCcceeEEEEe----eeccccCCC-----------------------CCCCccCCcHHHHH----
Confidence 99999975 78999999999999641 111111000 00000000000000
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
. ......+.|..+.|+|.|..|+=.+-|+++.+=|.....
T Consensus 200 ----------~------------E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 200 ----------S------------EASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ----------H------------hhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 0 001224679999999999999999999999999877553
No 214
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=6.4e-12 Score=116.30 Aligned_cols=263 Identities=17% Similarity=0.233 Sum_probs=179.7
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~d~~I~vwd 176 (441)
+..|.+.|..+.|.. .|+.++|||+|.+|.+||-..+.....+... ..+.+..|.|+... .-++.++.|+.+++=.
T Consensus 138 L~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d-~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD-RTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC-cCceeccccCceeeee
Confidence 348999999999876 6899999999999999998888876665422 23455557776543 4577888999999988
Q ss_pred CCC-Cce--eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545 177 IAS-GAI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN 253 (441)
Q Consensus 177 l~~-~~~--~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (441)
+.. +.. ...+..|.+.|.-++.-|+..+-|.|++.|+.+.-.|++.......+...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr--------------------- 274 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR--------------------- 274 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee---------------------
Confidence 643 332 34566799999999999998888999999999999999865322211000
Q ss_pred CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeec---cCeEEEEEccCCC-EEEEeecCCcEE
Q 013545 254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY---GAVTGLKVTEDGM-YLLSAGSDSRIR 329 (441)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~s~dg~-~l~sgs~D~~i~ 329 (441)
..+. -...+++..|-.. ++++|+.|..+|
T Consensus 275 -----------------------------------------------~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~R 307 (559)
T KOG1334|consen 275 -----------------------------------------------EADEKERVGLYTIAVDPRNTNEFAVGGSDQFAR 307 (559)
T ss_pred -----------------------------------------------ccCCccceeeeeEecCCCCccccccCChhhhhh
Confidence 0000 1256788888776 789999999999
Q ss_pred EeeCCCCCce--------eeeeeeEEeccCcceEEEeeCCCcE-EEEeCCCceEEEEc--cCC----------ceEe-ee
Q 013545 330 LWDVESGRNT--------LVNFETVRLQTSKPIQLATTQDPAV-VFVPCMTAVKAFDI--WSG----------KTCL-TF 387 (441)
Q Consensus 330 ~wd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~wd~--~~~----------~~~~-~l 387 (441)
+||..+-... +++.+......-.+..++++.++.- +++-....+.++.- ..| ..++ .+
T Consensus 308 vYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY 387 (559)
T KOG1334|consen 308 VYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY 387 (559)
T ss_pred hhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence 9998753211 1111111111123445677766554 44445556677743 222 2223 48
Q ss_pred cccccc--eEEEEE-cCCCCeEEEeecCCcEEEeCCCCCCCCCccCC
Q 013545 388 RGHYEY--VNCCCF-SSQDQELYTGGNDRQILVWCPSRHISDGVDAG 431 (441)
Q Consensus 388 ~gh~~~--v~~v~f-spd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~ 431 (441)
+||... |.+|-| -|...+++|||.=|.|.||+-.++....+..|
T Consensus 388 KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 388 KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred cccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 899753 666665 57889999999889999999998876665444
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=4.7e-10 Score=110.62 Aligned_cols=218 Identities=10% Similarity=0.055 Sum_probs=135.7
Q ss_pred CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEe---CCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT---EDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (441)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s---~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~ 202 (441)
..|.+||.............+.+....++|++. .|+..+ .+..|.+||+.+++. ..+..+.+.+.+.+|+|+|
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~---~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQ---EITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCC---EEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCC
Confidence 478888886554433223445678888898753 344333 246899999998875 3455667778899999999
Q ss_pred CcEEEEeecCCc--EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545 203 EWILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280 (441)
Q Consensus 203 ~~~l~s~s~Dg~--I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (441)
+.++++.+.++. |.+||+.++...+.
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~L---------------------------------------------------- 285 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTTRL---------------------------------------------------- 285 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceEEc----------------------------------------------------
Confidence 977777777766 55557654321110
Q ss_pred CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-C--CcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545 281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-D--SRIRLWDVESGRNTLVNFETVRLQTSKPIQLA 357 (441)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (441)
..+.+.....+|+|||+.|+..+. + ..|++||+.+++.... ...........
T Consensus 286 --------------------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l-----t~~~~~~~~~~ 340 (435)
T PRK05137 286 --------------------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI-----SFGGGRYSTPV 340 (435)
T ss_pred --------------------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe-----ecCCCcccCeE
Confidence 011122445789999998887663 3 3688888876543211 11122233456
Q ss_pred eeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC------CcEEEeCCCCCCCC
Q 013545 358 TTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND------RQILVWCPSRHISD 426 (441)
Q Consensus 358 ~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D------~~i~vW~~~~~~~~ 426 (441)
++|++..++.... ..+.+||+..+.. ..+. +...+..+.|+|||++|+-.+.+ ..+.+.++.+....
T Consensus 341 ~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~ 417 (435)
T PRK05137 341 WSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER 417 (435)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence 8899988766432 2567778755443 3332 22347789999999998754432 24666677665544
No 216
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.36 E-value=1.3e-10 Score=104.47 Aligned_cols=157 Identities=16% Similarity=0.244 Sum_probs=116.2
Q ss_pred ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEE--EeCCCcEEEEECCCC
Q 013545 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAA--GTEDVQVRLCDIASG 180 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las--~s~d~~I~vwdl~~~ 180 (441)
.|.++.. +.++|+.+=.+. |-|+|+++.++++++... .+.--+++++... +.++|- ....|.|.+||+.+-
T Consensus 89 ~IL~Vrm---Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 89 SILAVRM---NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred ceEEEEE---ccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCC-CceEEecCCCCCceEEEEEcccc
Confidence 4555555 456777776654 999999999998877643 2222345555432 224442 234689999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCc-EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA-IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259 (441)
Q Consensus 181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~-I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (441)
+....+..|.+++-+++|+|+|. +|||+|.-|+ ||++.+.++..+..|.
T Consensus 164 ~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFR----------------------------- 213 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFR----------------------------- 213 (391)
T ss_pred eeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeee-----------------------------
Confidence 99999999999999999999997 6899999886 7999987764333221
Q ss_pred CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
.| .....|.+|+|+|++++|++.|..++|++|.++..
T Consensus 214 -------------------------------RG---------~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 214 -------------------------------RG---------TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred -------------------------------CC---------ceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 00 01245899999999999999999999999998754
No 217
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.5e-10 Score=114.02 Aligned_cols=217 Identities=17% Similarity=0.156 Sum_probs=135.0
Q ss_pred cccceeEEEEeeCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC--cEEEEE
Q 013545 102 HKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCD 176 (441)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~sgs~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~--~I~vwd 176 (441)
|...+.+..|+| |++.|+..+.+ ..|.+||+.+++........+......++|++. .++.+.+.++ .|++||
T Consensus 202 ~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~--~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 202 SAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR--RLALTLSRDGNPEIYVMD 278 (433)
T ss_pred CCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC--EEEEEEeCCCCceEEEEE
Confidence 445677778887 78888887753 469999998877644333444445567777643 3444545444 699999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEE--cCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD--IRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS 254 (441)
Q Consensus 177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (441)
+.+++. ..+..+.......+|+|+++.+++++..+|...+|. +..+...+.
T Consensus 279 ~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-------------------------- 331 (433)
T PRK04922 279 LGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-------------------------- 331 (433)
T ss_pred CCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--------------------------
Confidence 998874 445566666678899999987655554556655554 332211000
Q ss_pred CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC---cEEEe
Q 013545 255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS---RIRLW 331 (441)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~---~i~~w 331 (441)
..+......++|||||++|+..+.++ .|.+|
T Consensus 332 ----------------------------------------------t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~ 365 (433)
T PRK04922 332 ----------------------------------------------TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVM 365 (433)
T ss_pred ----------------------------------------------ecCCCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence 00001123578999999988765443 69999
Q ss_pred eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcC
Q 013545 332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 401 (441)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp 401 (441)
|+.+++... +. .........+++|+..++.... ..+.++++. +.....+..+.+.+...+|||
T Consensus 366 d~~~g~~~~--Lt----~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 366 DLSTGSVRT--LT----PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ECCCCCeEE--CC----CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 998765321 11 1112234578899987665432 245666663 445566666667777788876
No 218
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.35 E-value=1.2e-10 Score=110.69 Aligned_cols=189 Identities=22% Similarity=0.359 Sum_probs=140.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEEec----CCeeEEEeec------cC-----------CCCccEEEEEeCCCcE
Q 013545 114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM----PGKVYRTAMS------PL-----------AASHMLIAAGTEDVQV 172 (441)
Q Consensus 114 ~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~----~~~~~~~~~~------~~-----------~~~~~~las~s~d~~I 172 (441)
+...+||....||.+||||...++.-..|.. .+......+. |. ..+..+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3467899999999999999988877655542 2332222221 11 1123467778889999
Q ss_pred EEEECCCCceeeeec--CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545 173 RLCDIASGAISQTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 173 ~vwdl~~~~~~~~l~--~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
.+|++..|+....+. .|.+.|.++.++.+-. .|.|++.|+.+..|+......++.+.
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~-------------------- 141 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWK-------------------- 141 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeec--------------------
Confidence 999999999887775 6999999999987765 57999999999999987654433321
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL 330 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~ 330 (441)
+-...+.+++.+|||..+++++ ++|++
T Consensus 142 ---------------------------------------------------~~~~~~~sl~is~D~~~l~~as--~~ik~ 168 (541)
T KOG4547|consen 142 ---------------------------------------------------EQKPLVSSLCISPDGKILLTAS--RQIKV 168 (541)
T ss_pred ---------------------------------------------------cCCCccceEEEcCCCCEEEecc--ceEEE
Confidence 1123477899999999998876 56777
Q ss_pred eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCC-----CCe
Q 013545 331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ-----DQE 405 (441)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd-----~~~ 405 (441)
||+++. +.+.+|.||.++|.++.|..+ |++
T Consensus 169 ~~~~~k---------------------------------------------evv~~ftgh~s~v~t~~f~~~~~g~~G~~ 203 (541)
T KOG4547|consen 169 LDIETK---------------------------------------------EVVITFTGHGSPVRTLSFTTLIDGIIGKY 203 (541)
T ss_pred EEccCc---------------------------------------------eEEEEecCCCcceEEEEEEEeccccccce
Confidence 777653 445678999999999999988 777
Q ss_pred EE-EeecCCcEEEeCCC
Q 013545 406 LY-TGGNDRQILVWCPS 421 (441)
Q Consensus 406 l~-s~s~D~~i~vW~~~ 421 (441)
+. ++..+.-|.+|-..
T Consensus 204 vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 204 VLSSAAAERGITVWVVE 220 (541)
T ss_pred eeeccccccceeEEEEE
Confidence 66 45667778889654
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=2.6e-10 Score=111.92 Aligned_cols=220 Identities=16% Similarity=0.148 Sum_probs=137.2
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEE--
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC-- 175 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vw-- 175 (441)
.+...+.+..|+| |++.|+..+.+ ..|.+||+.+++........+......++|++. .++.+.+.++...+|
T Consensus 193 ~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 193 SSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR--TLAVALSRDGNSQIYTV 269 (427)
T ss_pred cCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC--EEEEEEccCCCceEEEE
Confidence 3455677788887 78888877653 359999999887654333455556677888653 344556667765555
Q ss_pred ECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccccccccCccC
Q 013545 176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKSLSAGQNS 254 (441)
Q Consensus 176 dl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (441)
|+.++. ...+..+........|+|+|+.+++++..++...+|.+.... ....+
T Consensus 270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l------------------------- 323 (427)
T PRK02889 270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV------------------------- 323 (427)
T ss_pred ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-------------------------
Confidence 555554 445555666667789999999765555556788888754210 00000
Q ss_pred CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC---cEEEe
Q 013545 255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS---RIRLW 331 (441)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~---~i~~w 331 (441)
..+.......+|||||++|+..+.++ .|.+|
T Consensus 324 ----------------------------------------------t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~ 357 (427)
T PRK02889 324 ----------------------------------------------TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQ 357 (427)
T ss_pred ----------------------------------------------ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 00001122467999999998776554 69999
Q ss_pred eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-C---ceEEEEccCCceEeeecccccceEEEEEcCC
Q 013545 332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-T---AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ 402 (441)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd 402 (441)
|+.+++.... . .........++||+..++.... . .+.+.++ ++.....+..+.+.+...+|||-
T Consensus 358 d~~~g~~~~l--t----~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 358 DLATGQVTAL--T----DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ECCCCCeEEc--c----CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 9987653211 1 1112234578999988776543 2 2444444 46666666677777888888873
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.35 E-value=7.8e-11 Score=120.15 Aligned_cols=167 Identities=23% Similarity=0.251 Sum_probs=114.3
Q ss_pred cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC-------CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCC
Q 013545 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-------TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTED 169 (441)
Q Consensus 98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d 169 (441)
+.+.|+..|..++.+++++.+|+|||.||+||+||++. .+...++. ..+.+..+.+.+.+ ..+|.++.|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~---~~~Av~t~D 1119 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG---DQFAVSTKD 1119 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC---CeEEEEcCC
Confidence 45679999999999888889999999999999999752 12233444 34556666666543 468888999
Q ss_pred CcEEEEECCCCc-------eeeeecCCC--CCeEEEEEecCCCc-EEEEeecCCcEEEEEcCCCceeeEeccCCccccCC
Q 013545 170 VQVRLCDIASGA-------ISQTLSGHR--DGIMTVEWSTSSEW-ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR 239 (441)
Q Consensus 170 ~~I~vwdl~~~~-------~~~~l~~h~--~~v~~v~fsp~~~~-~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~ 239 (441)
|.|++.+++..+ ..+....+. .-|..-+|....+. +++-+..-+.|..||+++....-.++
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk--------- 1190 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK--------- 1190 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh---------
Confidence 999999997621 111112222 22333344333332 56677778999999998532110000
Q ss_pred CCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE
Q 013545 240 PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL 319 (441)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 319 (441)
..-..|.|++++.+|.+..+
T Consensus 1191 ------------------------------------------------------------~~~~hG~vTSi~idp~~~Wl 1210 (1431)
T KOG1240|consen 1191 ------------------------------------------------------------NQLRHGLVTSIVIDPWCNWL 1210 (1431)
T ss_pred ------------------------------------------------------------cCccccceeEEEecCCceEE
Confidence 01123679999999999999
Q ss_pred EEeecCCcEEEeeCCCC
Q 013545 320 LSAGSDSRIRLWDVESG 336 (441)
Q Consensus 320 ~sgs~D~~i~~wd~~~~ 336 (441)
+.|+.-|.+.+||++-+
T Consensus 1211 viGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1211 VIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred EEecCCceEEEEEeecC
Confidence 99999999999999743
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3.9e-10 Score=111.06 Aligned_cols=222 Identities=14% Similarity=0.133 Sum_probs=137.5
Q ss_pred CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC---CCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (441)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~---d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~ 202 (441)
.+|.+||...............+....++|++. .|+..+. +..|.+||+.+++.. .+..+.+...+.+|+|++
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~---~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGK---KLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCC---EEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCC
Confidence 469999986544333223344566777887643 4444442 346999999888753 333444555688999999
Q ss_pred CcEEEEeecCC--cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545 203 EWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280 (441)
Q Consensus 203 ~~~l~s~s~Dg--~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (441)
+.++++.+.+| .|.+||+.++.....
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~l---------------------------------------------------- 287 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTRL---------------------------------------------------- 287 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEEC----------------------------------------------------
Confidence 87766766666 588888765431110
Q ss_pred CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CCc--EEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545 281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSR--IRLWDVESGRNTLVNFETVRLQTSKPIQLA 357 (441)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (441)
..+.......+|+|||++|+..+. ++. |.++|+.+++.... ..........+
T Consensus 288 --------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-----t~~g~~~~~~~ 342 (433)
T PRK04922 288 --------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-----TFQGNYNARAS 342 (433)
T ss_pred --------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-----ecCCCCccCEE
Confidence 011122345789999998887663 444 66667766542211 11122233568
Q ss_pred eeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC---CcEEEeCCCCCCCCCccC
Q 013545 358 TTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND---RQILVWCPSRHISDGVDA 430 (441)
Q Consensus 358 ~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D---~~i~vW~~~~~~~~~~~~ 430 (441)
+++++..++.... ..+.+||+.+++.. .+. +........|+|||++|+..+.+ ..|.+++.+......+..
T Consensus 343 ~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 343 VSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred ECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 8999988776432 25889999877654 333 22345677999999998866553 357777886655443433
No 222
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.33 E-value=5.1e-11 Score=111.68 Aligned_cols=220 Identities=14% Similarity=0.256 Sum_probs=145.4
Q ss_pred ccEEEEEeCCCcEEEEECCCCceeeeec----CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCcc
Q 013545 160 HMLIAAGTEDVQVRLCDIASGAISQTLS----GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ 235 (441)
Q Consensus 160 ~~~las~s~d~~I~vwdl~~~~~~~~l~----~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~ 235 (441)
..-|..|..-+.|.+.|....+..+-+. -....|+|+.|-|.++.+|+.+..+|.+.+||..... ..+.
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~t~- 257 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GATA- 257 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cCCC-
Confidence 3346667788899999876643322221 1347799999999988888888999999999863210 0000
Q ss_pred ccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC
Q 013545 236 LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED 315 (441)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 315 (441)
+.... .+ .+....+.. . ...... +...+..--.+.|+..+|+||
T Consensus 258 -----p~~~~------------~k-------~~~~f~i~t------~---ksk~~r---NPv~~w~~~~g~in~f~FS~D 301 (636)
T KOG2394|consen 258 -----PSYQA------------LK-------DGDQFAILT------S---KSKKTR---NPVARWHIGEGSINEFAFSPD 301 (636)
T ss_pred -----Ccccc------------cC-------CCCeeEEee------e---eccccC---CccceeEeccccccceeEcCC
Confidence 00000 00 000000000 0 000000 001112222457999999999
Q ss_pred CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccce
Q 013545 316 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYV 394 (441)
Q Consensus 316 g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v 394 (441)
|++||+-|.||.+||+|..+.+.. ..++-..+...+++++||++++++++. +-|.+|.+..++.+..=.||+.+|
T Consensus 302 G~~LA~VSqDGfLRvF~fdt~eLl----g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWV 377 (636)
T KOG2394|consen 302 GKYLATVSQDGFLRIFDFDTQELL----GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWV 377 (636)
T ss_pred CceEEEEecCceEEEeeccHHHHH----HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccce
Confidence 999999999999999999875421 111122356678999999999999877 468999999999999999999999
Q ss_pred EEEEEcC-------------------------------C----C-------------CeEEEeecCCcEEEeCCCCCCCC
Q 013545 395 NCCCFSS-------------------------------Q----D-------------QELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 395 ~~v~fsp-------------------------------d----~-------------~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
+.|+|.| + + =.|.|.|.|..+.+||+.-..+-
T Consensus 378 s~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 378 SVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred eeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 9999983 1 1 13678899999999999865543
No 223
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.32 E-value=1.5e-10 Score=108.49 Aligned_cols=207 Identities=18% Similarity=0.261 Sum_probs=134.4
Q ss_pred cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC
Q 013545 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT 136 (441)
Q Consensus 57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~ 136 (441)
+.++-+++||.+.|-+-.... .....+|.++|.+..|++ ||.-|+|+|.||.|++|.-...
T Consensus 76 d~~~i~s~DGkf~il~k~~rV------------------E~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrsGM 136 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARV------------------ERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRSGM 136 (737)
T ss_pred ceEEEEcCCceEEEecccchh------------------hhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEeccch
Confidence 468888899998887632111 122347999999999987 7889999999999999974322
Q ss_pred eEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEE
Q 013545 137 RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIR 216 (441)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~ 216 (441)
-.-...+....++++.+.|... .++... .+.+.+=-++....+-..+.|.+-|.++.|+|.++ +++||++|-..+
T Consensus 137 LRStl~Q~~~~v~c~~W~p~S~--~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfK 211 (737)
T KOG1524|consen 137 LRSTVVQNEESIRCARWAPNSN--SIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFK 211 (737)
T ss_pred HHHHHhhcCceeEEEEECCCCC--ceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCceeEE
Confidence 1111123345688999998754 344433 35677777766655566789999999999999987 689999999999
Q ss_pred EEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccc
Q 013545 217 FWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSS 296 (441)
Q Consensus 217 iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (441)
+||-.....+...-..+ ..+.+++.++ ...+-++. ..
T Consensus 212 vWD~~G~~Lf~S~~~ey---------------------------------~ITSva~npd-~~~~v~S~---------nt 248 (737)
T KOG1524|consen 212 IWDAQGANLFTSAAEEY---------------------------------AITSVAFNPE-KDYLLWSY---------NT 248 (737)
T ss_pred eecccCcccccCChhcc---------------------------------ceeeeeeccc-cceeeeee---------ee
Confidence 99964322211100000 0011222222 11110110 00
Q ss_pred cccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545 297 QDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL 330 (441)
Q Consensus 297 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~ 330 (441)
........+.|..++||+||..++.|...|.+.+
T Consensus 249 ~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 249 ARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 0012235678999999999999999999998764
No 224
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.32 E-value=9.6e-09 Score=98.15 Aligned_cols=293 Identities=16% Similarity=0.149 Sum_probs=167.1
Q ss_pred eEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE-eCC
Q 013545 47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG-SYD 125 (441)
Q Consensus 47 ~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg-s~D 125 (441)
..+.|+| +++++..++.||.|.++|+.+.+... .+.. | .....+++++ ||.+++.+ -.+
T Consensus 40 ~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~---------~i~~-------G--~~~~~i~~s~-DG~~~~v~n~~~ 99 (369)
T PF02239_consen 40 AGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVA---------TIKV-------G--GNPRGIAVSP-DGKYVYVANYEP 99 (369)
T ss_dssp EEEE-TT--SSEEEEEETTSEEEEEETTSSSEEE---------EEE--------S--SEEEEEEE---TTTEEEEEEEET
T ss_pred eEEEecC-CCCEEEEEcCCCeEEEEECCcccEEE---------EEec-------C--CCcceEEEcC-CCCEEEEEecCC
Confidence 4467885 68899889999999999998765311 1110 1 1223456665 78888755 468
Q ss_pred CcEEEEECCCCeEEEEEecCC--------eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee-eecCCCCCeEEE
Q 013545 126 HYVKVWDTNCTRVVMNFKMPG--------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTV 196 (441)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~h~~~v~~v 196 (441)
+++.++|.++.+++..++..+ .+..+..++. ...++++-...+.|-+.|....+.+. ....-.......
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~--~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG--RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS--SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred CceeEeccccccceeecccccccccccCCCceeEEecCC--CCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 999999999999988776432 2333333443 22345555555788888887765432 222233445678
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
.|+|++++++++...++.|-++|+++++....++....+.
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~---------------------------------------- 217 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPH---------------------------------------- 217 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBE----------------------------------------
T ss_pred ccCcccceeeecccccceeEEEeeccceEEEEeecccccc----------------------------------------
Confidence 9999999887777778899999998876655443211100
Q ss_pred ccccCCCCcccccCCCcccccccceeec--cCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHY--GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 354 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 354 (441)
.+... ...|. +++... ...+...++.-....+.+||....+. ...+.. .+.+.
T Consensus 218 -----~~~~~-------------~~php~~g~vw~~--~~~~~~~~~~ig~~~v~v~d~~~wkv----v~~I~~-~G~gl 272 (369)
T PF02239_consen 218 -----PGPGA-------------NFPHPGFGPVWAT--SGLGYFAIPLIGTDPVSVHDDYAWKV----VKTIPT-QGGGL 272 (369)
T ss_dssp -----ETTEE-------------EEEETTTEEEEEE--EBSSSSEEEEEE--TTT-STTTBTSE----EEEEE--SSSS-
T ss_pred -----ccccc-------------cccCCCcceEEee--ccccceecccccCCccccchhhcCeE----EEEEEC-CCCcc
Confidence 00000 01232 233322 23344443433344677888877553 223333 34446
Q ss_pred EEEeeCCCcEEEEeC---C--CceEEEEccCCceEeeecccc-cceEEEEEcCCCCeEEEeecCC--cEEEeCCCCCCCC
Q 013545 355 QLATTQDPAVVFVPC---M--TAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDR--QILVWCPSRHISD 426 (441)
Q Consensus 355 ~~~~~~~~~~~~~~~---~--~~~~~wd~~~~~~~~~l~gh~-~~v~~v~fspd~~~l~s~s~D~--~i~vW~~~~~~~~ 426 (441)
-+..+|++..+.+.. . ..+.++|..+.+...++.... ..+..+.|++||+++....+|+ .|.|+|..+.+..
T Consensus 273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 273 FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp -EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 778899999888761 1 479999999988887775333 3599999999999877544443 6999999887643
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=3e-10 Score=102.78 Aligned_cols=205 Identities=18% Similarity=0.195 Sum_probs=142.6
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccC-CCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE-GGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 121 (441)
.+.|-.+... ++ .|++|-.+|.+++|..+.+..-. .-..++.. .++..+.-.+.+..++|+
T Consensus 105 ~~~I~gl~~~--dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g---------------~g~~~~r~~~~~p~Iva~ 166 (412)
T KOG3881|consen 105 TKSIKGLKLA--DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG---------------PGLYDVRQTDTDPYIVAT 166 (412)
T ss_pred cccccchhhc--CC-EEEEEecCCcEEEEeccCCccccccceeeecC---------------CceeeeccCCCCCceEec
Confidence 3556666664 34 69999999999999987443100 00001111 123333334445568888
Q ss_pred EeCC--CcEEEEECCCCeEEEEEecC--------Cee--EEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeeecC
Q 013545 122 GSYD--HYVKVWDTNCTRVVMNFKMP--------GKV--YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSG 188 (441)
Q Consensus 122 gs~D--~~i~iWd~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~ 188 (441)
||.. ..++|||+++.+.+.+.+.. -++ ..+.|.+..+ ...||+++.-+.+++||...+. ++..+.-
T Consensus 167 GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~~qRRPV~~fd~ 245 (412)
T KOG3881|consen 167 GGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTRHQRRPVAQFDF 245 (412)
T ss_pred CchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCcccCcceeEecc
Confidence 9999 89999999888665544321 122 2333433222 4578999999999999998774 5666666
Q ss_pred CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545 189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG 268 (441)
Q Consensus 189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (441)
-..+++++...|++. ++++|..-+.+..||+|.++....
T Consensus 246 ~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~---------------------------------------- 284 (412)
T KOG3881|consen 246 LENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGC---------------------------------------- 284 (412)
T ss_pred ccCcceeeeecCCCc-EEEEecccchhheecccCceeecc----------------------------------------
Confidence 678899999999997 467888889999999997643211
Q ss_pred CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
.+.+-.+.+++|..+|.+.+++++|-|+.|||+|+.+.+
T Consensus 285 ------------------------------~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 285 ------------------------------GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred ------------------------------ccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 012335779999999999999999999999999999854
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.30 E-value=1.3e-10 Score=102.84 Aligned_cols=306 Identities=14% Similarity=0.128 Sum_probs=186.2
Q ss_pred EEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC
Q 013545 110 IWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH 189 (441)
Q Consensus 110 ~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h 189 (441)
.|+ ++|+++|++++- .+.|=|.++-+..+.+.+-.++.-+.+..+ +-.+|.+...++.|.+|++...+....+...
T Consensus 15 ~fS-p~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ad--s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 15 SFS-PCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKAD--SCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred eEC-CCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeecc--ceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 344 489999999876 677778777665544444444555555543 3457888899999999999999888888888
Q ss_pred CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCcccc-------CCCCcccccccccCccCC-----cC
Q 013545 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLG-------RRPPLLKRKSLSAGQNSS-----VK 257 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-----~~ 257 (441)
.+.+.++.|||+|+.+|.+...|-.|.+|.+.+.++...-.......+ +-..+..+++-....... ..
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence 889999999999988999999999999999988776543222111100 000000000000000000 00
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeec-cCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY-GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
.+.....+.+..++..+|++...+-.+.. ++ .+...-|- -.+..+.|+|.+++|+.|+.|+.+|+-|--+-
T Consensus 171 l~~f~~dT~DltgieWsPdg~~laVwd~~--Le------ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW 242 (447)
T KOG4497|consen 171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNV--LE------YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW 242 (447)
T ss_pred HHhcCCCcccccCceECCCCcEEEEecch--hh------heeeeeeeccceeEEEeccccceEEeeccchhhhhhceeee
Confidence 01111223445566666766543321110 00 00011121 24778999999999999999999987542110
Q ss_pred C-------------ce-------------------------------------------eeeeeeEEeccC------cce
Q 013545 337 R-------------NT-------------------------------------------LVNFETVRLQTS------KPI 354 (441)
Q Consensus 337 ~-------------~~-------------------------------------------~~~~~~~~~~~~------~~~ 354 (441)
+ +. ...++..+...+ +.-
T Consensus 243 k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g 322 (447)
T KOG4497|consen 243 KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAG 322 (447)
T ss_pred eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccc
Confidence 0 00 000000010011 112
Q ss_pred EEEeeCCCcEEEEeCC---CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545 355 QLATTQDPAVVFVPCM---TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV 428 (441)
Q Consensus 355 ~~~~~~~~~~~~~~~~---~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~ 428 (441)
.+++++|..++.+-.. ..+-+||+-+.++...|. ...+|....|.|....|+-+-....+..|.++..+..++
T Consensus 323 ~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v 398 (447)
T KOG4497|consen 323 KLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV 398 (447)
T ss_pred eeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec
Confidence 4677888887777655 378999997766655443 556899999999988877665555689999988665544
No 227
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=2e-10 Score=102.19 Aligned_cols=222 Identities=16% Similarity=0.256 Sum_probs=139.4
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEE-CCCCcccCCCCceecc---------c-eeEEee-----------
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYD-VQRATDYEGGGHIAKH---------R-SVFVVD----------- 95 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd-~~~~~~~~~~~~~~~~---------~-~~~~~~----------- 95 (441)
.+.||...|+....-|. +.-+++.+.|.++|||- ...+...+...+.... . .++.+.
T Consensus 19 ~~eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred hhcCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 35699999998777654 44699999999999993 2322221110000000 0 001000
Q ss_pred ---------cccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEE
Q 013545 96 ---------KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAG 166 (441)
Q Consensus 96 ---------~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~ 166 (441)
-+....|...|..+.+.- ....+++++.|..+..--.+.+..+..+.+... .++...+-.+...|
T Consensus 98 sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~-----~t~~~~d~~~~fvG 171 (404)
T KOG1409|consen 98 SEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETP-----ASALQFDALYAFVG 171 (404)
T ss_pred hhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeecc-----CCCCceeeEEEEec
Confidence 011237888888777754 467899999998886655666655443332211 11111111133345
Q ss_pred eCCCcEEEEECCC--CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccc
Q 013545 167 TEDVQVRLCDIAS--GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLK 244 (441)
Q Consensus 167 s~d~~I~vwdl~~--~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (441)
...+.|.+..+.. -.++.++.+|.+.+.++.|.|... +|.||..|..|-+||+--.+-.
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~------------------ 232 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGT------------------ 232 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcce------------------
Confidence 5556666655533 346778999999999999998765 7899999999999998532100
Q ss_pred ccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec
Q 013545 245 RKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS 324 (441)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 324 (441)
.-...+|...|..+..-+--+.+.|++.
T Consensus 233 ----------------------------------------------------~~el~gh~~kV~~l~~~~~t~~l~S~~e 260 (404)
T KOG1409|consen 233 ----------------------------------------------------AYELQGHNDKVQALSYAQHTRQLISCGE 260 (404)
T ss_pred ----------------------------------------------------eeeeccchhhhhhhhhhhhheeeeeccC
Confidence 0012356666777776677778999999
Q ss_pred CCcEEEeeCCCCC
Q 013545 325 DSRIRLWDVESGR 337 (441)
Q Consensus 325 D~~i~~wd~~~~~ 337 (441)
|+-|.+||+...+
T Consensus 261 dg~i~~w~mn~~r 273 (404)
T KOG1409|consen 261 DGGIVVWNMNVKR 273 (404)
T ss_pred CCeEEEEecccee
Confidence 9999999987543
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=3.6e-09 Score=104.32 Aligned_cols=217 Identities=11% Similarity=0.069 Sum_probs=131.2
Q ss_pred CcccceeEEEEeeCCCCEEEEEeC---CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC--cEEEE
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLC 175 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~--~I~vw 175 (441)
.|...+....|+| |++.|+..+. +..|.+||+.+++........+.+....++|++. .++.+.+.++ .|.+|
T Consensus 199 ~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~ 275 (435)
T PRK05137 199 DGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGR--KVVMSLSQGGNTDIYTM 275 (435)
T ss_pred cCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCC--EEEEEEecCCCceEEEE
Confidence 4556788888887 7888887764 4689999998887644334455566677888643 3555555555 48888
Q ss_pred ECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC--cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545 176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN 253 (441)
Q Consensus 176 dl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg--~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (441)
|+++++. ..+..+........|+|++++++.+...+| .|.+||+..+...+.
T Consensus 276 d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l------------------------- 329 (435)
T PRK05137 276 DLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI------------------------- 329 (435)
T ss_pred ECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe-------------------------
Confidence 9988865 446666666778999999987654444444 455556543211000
Q ss_pred CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC---CcEEE
Q 013545 254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD---SRIRL 330 (441)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D---~~i~~ 330 (441)
..+.+.+....|+|||++|+..+.+ ..|.+
T Consensus 330 -----------------------------------------------t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~ 362 (435)
T PRK05137 330 -----------------------------------------------SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGV 362 (435)
T ss_pred -----------------------------------------------ecCCCcccCeEECCCCCEEEEEEcCCCceEEEE
Confidence 0011224456899999998876543 36888
Q ss_pred eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-------CceEEEEccCCceEeeecccccceEEEEEcC
Q 013545 331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 401 (441)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp 401 (441)
||+.++.... + . .........++||+..++.... ..+.++++..++. ..+. ..+.+...+|||
T Consensus 363 ~d~~~~~~~~--l---t-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 363 MKPDGSGERI--L---T-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred EECCCCceEe--c---c-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 8886543211 1 0 1112334578899887765432 1345556544433 3333 233455566665
No 229
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.27 E-value=2.6e-10 Score=100.67 Aligned_cols=222 Identities=15% Similarity=0.148 Sum_probs=156.4
Q ss_pred cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe---EEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC-C
Q 013545 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR---VVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-A 178 (441)
Q Consensus 104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl-~ 178 (441)
.+|+|-+|.+ |+..+|.+-..+.|.|+...... ..++++. ...+..+.+.+.. +.|.+++.|..-++|.. .
T Consensus 11 ~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s---nrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 11 EPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS---NRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred CceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC---CceeEccCCCCccccccCC
Confidence 4688888876 78899999999999999876544 4455543 4567777888754 36889999999999999 4
Q ss_pred CCc--eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545 179 SGA--ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256 (441)
Q Consensus 179 ~~~--~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (441)
.++ +...|.-|...+++|.|+|... .||.||.-..|.+|-.+.....=+
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWV---------------------------- 137 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWV---------------------------- 137 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceeh----------------------------
Confidence 443 4445667889999999999976 589999999999997653210000
Q ss_pred CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
...+.+.+.+.|++++|+|++-++++||.|+.+|++..--
T Consensus 138 ---------------------------------------sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayI- 177 (361)
T KOG1523|consen 138 ---------------------------------------SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYI- 177 (361)
T ss_pred ---------------------------------------hhhhCCccccceeeeeccCCcceecccccCcceeEEEEee-
Confidence 0000123456799999999999999999999999996421
Q ss_pred CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEE
Q 013545 337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQIL 416 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~ 416 (441)
..+...... .|=+.. +-=|.+..++....++|..+.|+|+|..|+=.+.|.++.
T Consensus 178 -------K~Vdekpap------~pWgsk-------------~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 178 -------KGVDEKPAP------TPWGSK-------------MPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred -------eccccCCCC------CCCccC-------------CcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 111100000 000000 001233445555678899999999999999999999999
Q ss_pred EeCCCCCC
Q 013545 417 VWCPSRHI 424 (441)
Q Consensus 417 vW~~~~~~ 424 (441)
+=|...+.
T Consensus 232 ~~da~~p~ 239 (361)
T KOG1523|consen 232 FVDAAGPS 239 (361)
T ss_pred EeecCCCc
Confidence 88887664
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.26 E-value=5.6e-09 Score=92.28 Aligned_cols=159 Identities=14% Similarity=0.250 Sum_probs=110.3
Q ss_pred ccceeEEEEeeCCCCEEEEEeCCCcEEEEECC-CCeEEEEEecCC-eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545 103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN-CTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180 (441)
Q Consensus 103 ~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~ 180 (441)
..+|.++...+ ++++.. ..++|.+|... +.+.++.+.... +---+++.|......+..=|-.-|+|+|-|+...
T Consensus 94 ~~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 94 NSEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred ccceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 34676776643 456554 56799999876 444555443211 1112334443322223333455689999999776
Q ss_pred ce--eeeecCCCCCeEEEEEecCCCcEEEEeecCCc-EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 181 AI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA-IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 181 ~~--~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~-I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
+. ...+..|.+.|.|++.+-+|. ++||+|..|+ |||||.+++..+..+.-
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RR-------------------------- 222 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRR-------------------------- 222 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeec--------------------------
Confidence 55 467889999999999999997 6899999997 89999998765443210
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~ 335 (441)
+ .....|.+|+||||..+|+++|.-|||+++.++.
T Consensus 223 ----------------------------------G---------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 223 ----------------------------------G---------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ----------------------------------C---------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 0 0113489999999999999999999999998875
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.25 E-value=1.1e-08 Score=97.69 Aligned_cols=274 Identities=18% Similarity=0.113 Sum_probs=158.9
Q ss_pred EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe
Q 013545 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR 137 (441)
Q Consensus 58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~ 137 (441)
++++-..++.|.+.|..+.+... .+.. + +++.....+++|+.+++.++.|+.|.++|+.+.+
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~------------~i~~----~--~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~ 69 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVA------------RIPT----G--GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK 69 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEE------------EEE-----S--TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS
T ss_pred EEEEecCCCEEEEEECCCCeEEE------------EEcC----C--CCceeEEEecCCCCEEEEEcCCCeEEEEECCccc
Confidence 45778889999999987654210 1110 1 1122233345589999999999999999999999
Q ss_pred EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC-------CCCeEEEEEecCCCcEEEEee
Q 013545 138 VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH-------RDGIMTVEWSTSSEWILVTGG 210 (441)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h-------~~~v~~v~fsp~~~~~l~s~s 210 (441)
.+.+++.......+++++++. .++++....+.+.++|.++.+.++.+... ...+.++..+|..+.+ +..-
T Consensus 70 ~v~~i~~G~~~~~i~~s~DG~--~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f-Vv~l 146 (369)
T PF02239_consen 70 VVATIKVGGNPRGIAVSPDGK--YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF-VVNL 146 (369)
T ss_dssp EEEEEE-SSEEEEEEE--TTT--EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE-EEEE
T ss_pred EEEEEecCCCcceEEEcCCCC--EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE-EEEE
Confidence 999999888888899998653 45556667899999999999988877532 3467788888887743 4444
Q ss_pred cC-CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCccccc
Q 013545 211 CD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL 289 (441)
Q Consensus 211 ~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (441)
.| +.|-+-|....+.+..-
T Consensus 147 kd~~~I~vVdy~d~~~~~~~------------------------------------------------------------ 166 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVT------------------------------------------------------------ 166 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEE------------------------------------------------------------
T ss_pred ccCCeEEEEEecccccccee------------------------------------------------------------
Confidence 44 55544454432111000
Q ss_pred CCCcccccccceeeccCeEEEEEccCCCEEEE-eecCCcEEEeeCCCCCceeeeeeeEEeccCcce----------EEEe
Q 013545 290 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS-AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI----------QLAT 358 (441)
Q Consensus 290 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-gs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 358 (441)
............|+|+++|++. .-....|-++|..+++... ....-...+..+. -.+.
T Consensus 167 ----------~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~-~i~~g~~p~~~~~~~~php~~g~vw~~ 235 (369)
T PF02239_consen 167 ----------TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA-LIDTGKKPHPGPGANFPHPGFGPVWAT 235 (369)
T ss_dssp ----------EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE-EEE-SSSBEETTEEEEEETTTEEEEEE
T ss_pred ----------eecccccccccccCcccceeeecccccceeEEEeeccceEEE-EeeccccccccccccccCCCcceEEee
Confidence 0001122456789999998655 4566689999988765321 1111000011111 1222
Q ss_pred eCCCcEE-EEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe----ecCCcEEEeCCCCCC
Q 013545 359 TQDPAVV-FVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG----GNDRQILVWCPSRHI 424 (441)
Q Consensus 359 ~~~~~~~-~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~----s~D~~i~vW~~~~~~ 424 (441)
...+... ...+...+.+|+..+++.++++.....+ .-+.-+||+++|... ....+|.|+|..+-+
T Consensus 236 ~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 236 SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence 2222222 2233345667888889999999988777 777889999999987 445789999998764
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=3e-09 Score=104.54 Aligned_cols=206 Identities=14% Similarity=0.154 Sum_probs=125.2
Q ss_pred CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC---CCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (441)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~---d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~ 202 (441)
..|.+||.............+.+....++|++. .|+..+. ...|.+||+.+++.. .+....+.+.+.+|+|++
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~---~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGT---KLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCC---EEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCC
Confidence 467777774333222223445567778888653 4444432 246999999988754 333344556789999999
Q ss_pred CcEEEEeecCCcEEEEEcCCC-ceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 203 EWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 203 ~~~l~s~s~Dg~I~iWD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
+.++++.+.++..+||.+... +....
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~~~~----------------------------------------------------- 278 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSGLRR----------------------------------------------------- 278 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCCcEE-----------------------------------------------------
Confidence 877667788888888875421 00000
Q ss_pred CCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CCcEEEeeC--CCCCceeeeeeeEEeccCcceEEEe
Q 013545 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDV--ESGRNTLVNFETVRLQTSKPIQLAT 358 (441)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (441)
...+.+......|+|||++|+..+. ++...+|.+ .+++.... ...........+
T Consensus 279 ------------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-----t~~g~~~~~~~~ 335 (427)
T PRK02889 279 ------------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-----TFTGSYNTSPRI 335 (427)
T ss_pred ------------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-----ecCCCCcCceEE
Confidence 0011122345679999998876554 466667654 44332111 111122234678
Q ss_pred eCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545 359 TQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR 413 (441)
Q Consensus 359 ~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~ 413 (441)
+|++..++..+. ..+.+||+.+++... +..+ .......|+|||++|+.++.++
T Consensus 336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 336 SPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecC
Confidence 999988766543 258899998876543 3322 2346789999999988766544
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.20 E-value=1.7e-09 Score=93.83 Aligned_cols=75 Identities=25% Similarity=0.532 Sum_probs=54.9
Q ss_pred CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeec---CCcEEEEEcC
Q 013545 145 PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGC---DGAIRFWDIR 221 (441)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~---Dg~I~iWD~~ 221 (441)
.+++.+++++|.+. ..+++.|..+..|.+||++ ++.+..+. ...+..+.|+|+|+++ +.++. .|.|.+||++
T Consensus 59 ~~~I~~~~WsP~g~-~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l-~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 59 EGPIHDVAWSPNGN-EFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFL-VLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCceEEEEECcCCC-EEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEE-EEEEccCCCcEEEEEECC
Confidence 45699999999753 2334455567899999997 66666664 4567899999999864 55543 4679999998
Q ss_pred CCc
Q 013545 222 RAG 224 (441)
Q Consensus 222 ~~~ 224 (441)
+.+
T Consensus 134 ~~~ 136 (194)
T PF08662_consen 134 KKK 136 (194)
T ss_pred CCE
Confidence 544
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.17 E-value=4.7e-11 Score=110.02 Aligned_cols=110 Identities=13% Similarity=0.172 Sum_probs=86.2
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545 108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS 187 (441)
Q Consensus 108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~ 187 (441)
.+.+.. +|.+++-|+.-|-|-.+|..++.+...+.....+.++.|-.. ..++|++- ...++|||-. |..+..++
T Consensus 134 ~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHn---eq~~AVAQ-K~y~yvYD~~-GtElHClk 207 (545)
T KOG1272|consen 134 HLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHN---EQFFAVAQ-KKYVYVYDNN-GTELHCLK 207 (545)
T ss_pred eeeecC-CccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcc---hHHHHhhh-hceEEEecCC-CcEEeehh
Confidence 345554 788999999999999999999998888887777887777653 34677764 5679999964 55556666
Q ss_pred CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCce
Q 013545 188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC 225 (441)
Q Consensus 188 ~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~ 225 (441)
.| ..|..+.|.|.. ++|++++..|.++.-|+..|+.
T Consensus 208 ~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~Gkl 243 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKL 243 (545)
T ss_pred hc-Cchhhhcccchh-heeeecccCCceEEEeechhhh
Confidence 54 568899999985 6899999999999999987654
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=5.4e-09 Score=93.89 Aligned_cols=236 Identities=19% Similarity=0.284 Sum_probs=150.6
Q ss_pred ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC--
Q 013545 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-- 180 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-- 180 (441)
.+.-++|++ .-.-||.+..|.+||+||-+. ++...++. ...+.++++.|...+ -|+.|+. +-|.+|.....
T Consensus 100 dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas--elavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 100 DLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS--ELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred ceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc--eeeeeec-ceeEEEEcCcccc
Confidence 344566765 344578999999999999766 33333333 345788899998654 5666664 44899986432
Q ss_pred --c--------eeee--ecCCCCCeEEEEEecCCCcEEEEee-cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccc
Q 013545 181 --A--------ISQT--LSGHRDGIMTVEWSTSSEWILVTGG-CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKS 247 (441)
Q Consensus 181 --~--------~~~~--l~~h~~~v~~v~fsp~~~~~l~s~s-~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (441)
. ..+. -+|| ..|+++.|.+|+. .+++++ .|..|+|||..++.+....-
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~----------------- 235 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIP----------------- 235 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccccc-----------------
Confidence 1 1112 2355 6799999999987 567776 46899999998764322110
Q ss_pred cccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCc
Q 013545 248 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR 327 (441)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~ 327 (441)
--.+.+.-|.|||||.+|.+++-|+.
T Consensus 236 ------------------------------------------------------~glgg~slLkwSPdgd~lfaAt~dav 261 (445)
T KOG2139|consen 236 ------------------------------------------------------KGLGGFSLLKWSPDGDVLFAATCDAV 261 (445)
T ss_pred ------------------------------------------------------cCCCceeeEEEcCCCCEEEEecccce
Confidence 00134667899999999999999999
Q ss_pred EEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccC-C--------------ceEee------
Q 013545 328 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWS-G--------------KTCLT------ 386 (441)
Q Consensus 328 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~-~--------------~~~~~------ 386 (441)
.++|+.....- .+.-....+......++|+|..++.++.+.-+++.+.- + .+...
T Consensus 262 frlw~e~q~wt----~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti 337 (445)
T KOG2139|consen 262 FRLWQENQSWT----KERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTI 337 (445)
T ss_pred eeeehhcccce----ecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhh
Confidence 99997654221 01111223445567788999888777666555554311 0 00111
Q ss_pred ecc---cccceEEEEEcCCCCeEEEeec--C------CcEEEeCCCC
Q 013545 387 FRG---HYEYVNCCCFSSQDQELYTGGN--D------RQILVWCPSR 422 (441)
Q Consensus 387 l~g---h~~~v~~v~fspd~~~l~s~s~--D------~~i~vW~~~~ 422 (441)
..+ --++..+++|.|.|.+||+-=. + ..|.+|+...
T Consensus 338 ~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 338 CAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred hcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 111 1367899999999999997422 2 3467776543
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.13 E-value=3.6e-08 Score=96.91 Aligned_cols=218 Identities=13% Similarity=0.098 Sum_probs=129.7
Q ss_pred CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC---CCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545 125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS 201 (441)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~---d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~ 201 (441)
...|.++|...............+....+++++. .|+.... ...|++||+++++... +..+.+.+.+++|+|+
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~---~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spD 244 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQ---KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPD 244 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCC---EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence 3457788875444333233344466677777643 4444432 2479999999886533 3345566778999999
Q ss_pred CCcEEEEeecCC--cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545 202 SEWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI 279 (441)
Q Consensus 202 ~~~~l~s~s~Dg--~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (441)
++.++++.+.++ .|.+||+.++.....
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l--------------------------------------------------- 273 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRL--------------------------------------------------- 273 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEEC---------------------------------------------------
Confidence 987766666555 477777764321100
Q ss_pred cCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CC--cEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545 280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWDVESGRNTLVNFETVRLQTSKPIQL 356 (441)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (441)
..+.......+|+|||+.|+..+. ++ .|.++|+.+++... +..........
T Consensus 274 ---------------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-----l~~~~~~~~~~ 327 (417)
T TIGR02800 274 ---------------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-----LTFRGGYNASP 327 (417)
T ss_pred ---------------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-----eecCCCCccCe
Confidence 001112234579999998876554 33 57778887654221 11122233456
Q ss_pred EeeCCCcEEEEeCCC----ceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC---cEEEeCCCCCCC
Q 013545 357 ATTQDPAVVFVPCMT----AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR---QILVWCPSRHIS 425 (441)
Q Consensus 357 ~~~~~~~~~~~~~~~----~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~---~i~vW~~~~~~~ 425 (441)
.+++++..++..... .+.++|+.++... .+..+ ......+|+|||++|+.++.++ .+.+.+......
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~ 401 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFR 401 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCcee
Confidence 788998877765442 5788888775543 33322 2245668999999988766654 355555544433
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.12 E-value=7.1e-07 Score=85.19 Aligned_cols=250 Identities=14% Similarity=0.201 Sum_probs=148.4
Q ss_pred EEEEeeCCCCEEEEEeC----CCcEEEEECCCC--eE--EEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545 108 SAIWYPVDTGLFVTGSY----DHYVKVWDTNCT--RV--VMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178 (441)
Q Consensus 108 ~~~~~~~~~~~l~sgs~----D~~i~iWd~~~~--~~--~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~ 178 (441)
.+.+++ ++++|.+... ++.|..|++... ++ +...... .....+++.++ +..++++...++.|.++++.
T Consensus 41 ~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~--g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 41 WLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD--GRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp CEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT--SSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC--CCEEEEEEccCCeEEEEEcc
Confidence 355555 6778877766 578999887653 33 3333322 22334555554 33455555578999999998
Q ss_pred C-Cceeee---ec----------CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCce-eeEeccCCccccCCCCcc
Q 013545 179 S-GAISQT---LS----------GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLL 243 (441)
Q Consensus 179 ~-~~~~~~---l~----------~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~-~~~~~~~~~~~~~~~~~~ 243 (441)
. |.+... +. .-.....++.|+|++++++++.-....|.+|++..... +.....
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~------------ 185 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS------------ 185 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE------------
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec------------
Confidence 7 443222 11 12344679999999998776655556899999865320 100000
Q ss_pred cccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEe
Q 013545 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSA 322 (441)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sg 322 (441)
..+ ......+.++|+|+++++ ++.
T Consensus 186 -------------------------------------------~~~------------~~G~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 186 -------------------------------------------IKV------------PPGSGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp -------------------------------------------EEC------------STTSSEEEEEE-TTSSEEEEEE
T ss_pred -------------------------------------------ccc------------ccCCCCcEEEEcCCcCEEEEec
Confidence 000 011236789999999876 555
Q ss_pred ecCCcEEEeeCCCCCceeeeeeeEEec------cCcceEEEeeCCCcEEEEeCC--CceEEEEcc--CCce--Eeeeccc
Q 013545 323 GSDSRIRLWDVESGRNTLVNFETVRLQ------TSKPIQLATTQDPAVVFVPCM--TAVKAFDIW--SGKT--CLTFRGH 390 (441)
Q Consensus 323 s~D~~i~~wd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~--~~~~--~~~l~gh 390 (441)
-.+++|.++++......+......... ...+..+.+++|++.+++... ..+-+|++. ++++ +..+...
T Consensus 211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~ 290 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG 290 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES
T ss_pred CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC
Confidence 677889999988332222222222211 114567889999999988755 578899983 3433 2334433
Q ss_pred ccceEEEEEcCCCCeEEEee-cCCcEEEeCC--CCCCCCC
Q 013545 391 YEYVNCCCFSSQDQELYTGG-NDRQILVWCP--SRHISDG 427 (441)
Q Consensus 391 ~~~v~~v~fspd~~~l~s~s-~D~~i~vW~~--~~~~~~~ 427 (441)
......++|+|||++|+.+. .++.|.+|++ .++++..
T Consensus 291 G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 291 GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 44579999999999988765 4568888855 5666543
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.11 E-value=3.9e-08 Score=86.17 Aligned_cols=244 Identities=16% Similarity=0.216 Sum_probs=151.6
Q ss_pred eeEEEEe--eCCCC-EEEEEeCCCcEEEEECCCCeEEEEEec-CC-----e-eEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545 106 ISSAIWY--PVDTG-LFVTGSYDHYVKVWDTNCTRVVMNFKM-PG-----K-VYRTAMSPLAASHMLIAAGTEDVQVRLC 175 (441)
Q Consensus 106 V~~~~~~--~~~~~-~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~-----~-~~~~~~~~~~~~~~~las~s~d~~I~vw 175 (441)
+..+.|. +.+++ .++-+-.+|.|.++..........+.. .+ . ..++.+++.+ .-++++-.+|.+.+-
T Consensus 72 ~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~---~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 72 EFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSG---TKIFVSDSRGSISGV 148 (339)
T ss_pred cceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccC---ceEEEEcCCCcEEEE
Confidence 4444442 23444 455666778888887543322222221 11 1 2233344432 347778888999877
Q ss_pred ECCCCcee--eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545 176 DIASGAIS--QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN 253 (441)
Q Consensus 176 dl~~~~~~--~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (441)
+.....+. +..+.|.-+.+...|+...+.++.+||.|+.+..||+|..+.+ .+
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-i~------------------------ 203 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-IW------------------------ 203 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-ee------------------------
Confidence 76655443 4788999999999999877778999999999999999843210 00
Q ss_pred CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEee
Q 013545 254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWD 332 (441)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd 332 (441)
...+.|..-|.++.-+| +..+|+||+.|..|++||
T Consensus 204 --------------------------------------------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 204 --------------------------------------------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred --------------------------------------------ecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 00134666788888775 678999999999999999
Q ss_pred CCCCCceeeeeeeEEeccCcceEEEeeCCCcE-EEEeCC-CceEEEEccCC--c---eEeeecccccceEEEEEcCCCCe
Q 013545 333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAV-VFVPCM-TAVKAFDIWSG--K---TCLTFRGHYEYVNCCCFSSQDQE 405 (441)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~wd~~~~--~---~~~~l~gh~~~v~~v~fspd~~~ 405 (441)
.+.....+ +++ ...++..++...|.-.. ++.+|. .+.++.++..+ + .+.....|.+-...-.|..-...
T Consensus 240 tRnm~kPl--~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~ 315 (339)
T KOG0280|consen 240 TRNMGKPL--FKA--KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSF 315 (339)
T ss_pred hhcccCcc--ccC--ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccce
Confidence 98533221 111 11244455555554332 233444 57778777553 2 34556677776666666444456
Q ss_pred EEEeec-CCcEE-EeCCCCCCC
Q 013545 406 LYTGGN-DRQIL-VWCPSRHIS 425 (441)
Q Consensus 406 l~s~s~-D~~i~-vW~~~~~~~ 425 (441)
|+||+- |+.++ +|-.-++..
T Consensus 316 lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 316 LATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred eeeeeccccceeeeeeeccCCc
Confidence 888764 77756 897666543
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.11 E-value=3.2e-08 Score=97.31 Aligned_cols=186 Identities=18% Similarity=0.209 Sum_probs=114.1
Q ss_pred cccceeEEEEeeCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC--CcEEEEE
Q 013545 102 HKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED--VQVRLCD 176 (441)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~sgs~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d--~~I~vwd 176 (441)
+...+....|+| |+++|+.++.+ ..|.+||+.++.........+......+++++. .++.+.+.+ ..|++||
T Consensus 188 ~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 188 SREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGS--KLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred CCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC--EEEEEECCCCCccEEEEE
Confidence 334466667776 78888877654 479999999886554444555556677777643 344444444 3699999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCc--EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS 254 (441)
Q Consensus 177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~--I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (441)
+.+++. ..+..+........|+|+++++++++..++. |.++|+..++....
T Consensus 265 ~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l-------------------------- 317 (417)
T TIGR02800 265 LDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL-------------------------- 317 (417)
T ss_pred CCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe--------------------------
Confidence 988764 3444455555678899999876555544454 44445443211000
Q ss_pred CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC---cEEEe
Q 013545 255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS---RIRLW 331 (441)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~---~i~~w 331 (441)
..+...+..+.|+|||++|+.++.++ +|.+|
T Consensus 318 ----------------------------------------------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~ 351 (417)
T TIGR02800 318 ----------------------------------------------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM 351 (417)
T ss_pred ----------------------------------------------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence 00112345678999999999888776 78899
Q ss_pred eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC
Q 013545 332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC 369 (441)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (441)
|+.++.... +. .........+++++..++...
T Consensus 352 d~~~~~~~~--l~----~~~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 352 DLDGGGERV--LT----DTGLDESPSFAPNGRMILYAT 383 (417)
T ss_pred eCCCCCeEE--cc----CCCCCCCceECCCCCEEEEEE
Confidence 988754221 11 111122346788887766543
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=5e-08 Score=96.28 Aligned_cols=216 Identities=18% Similarity=0.218 Sum_probs=128.8
Q ss_pred ccceeEEEEeeCCCCEEEEEeCC-C--cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC--cEEEEEC
Q 013545 103 KYAISSAIWYPVDTGLFVTGSYD-H--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCDI 177 (441)
Q Consensus 103 ~~~V~~~~~~~~~~~~l~sgs~D-~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~--~I~vwdl 177 (441)
...+.+..|+| |++.|+..+.+ + .|.+||+.+++........+......++|++. .++.+.+.++ .|.++|+
T Consensus 217 ~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~--~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 217 PEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGK--KLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred CCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCC--EEEEEEeCCCCeEEEEEEC
Confidence 34566677887 78888766543 3 58888998876543333344444567787643 3445555566 4888899
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEE--EcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW--DIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS 255 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iW--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (441)
++++. ..+..+........|+|+++++++++..++...+| |+.+++..+..
T Consensus 294 ~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-------------------------- 346 (448)
T PRK04792 294 ATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-------------------------- 346 (448)
T ss_pred CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe--------------------------
Confidence 88764 34555556667889999999876666556655555 44332210000
Q ss_pred cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CC--cEEEee
Q 013545 256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWD 332 (441)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~--~i~~wd 332 (441)
..+ ......+|+|||++|+..+. ++ .|.++|
T Consensus 347 --------------------------------------------~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~d 380 (448)
T PRK04792 347 --------------------------------------------FEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQD 380 (448)
T ss_pred --------------------------------------------cCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEE
Confidence 000 01223579999998876654 34 455568
Q ss_pred CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcC
Q 013545 333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 401 (441)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp 401 (441)
+.+++.... . .........+++++..++.... ..+.+++. +|.....+..+.+.+...+|||
T Consensus 381 l~~g~~~~l--t----~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 381 LETGAMQVL--T----STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCCCeEEc--c----CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 777653211 1 0111123468899887766433 13555665 5666666777777778888887
No 241
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.10 E-value=1.6e-09 Score=101.82 Aligned_cols=177 Identities=18% Similarity=0.273 Sum_probs=126.0
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccC-CCCceeccceeEEe---ecccc-------cCcccceeEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE-GGGHIAKHRSVFVV---DKQHE-------HGHKYAISSAIW 111 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~---~~~~~-------~~h~~~V~~~~~ 111 (441)
+..|+|+.|-|.+...++.+-.+|.+.+||....-... ...........+.+ ..... .--++.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 37899999987666677788889999999863211000 00000000000100 00000 011236777788
Q ss_pred eeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC
Q 013545 112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR 190 (441)
Q Consensus 112 ~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~ 190 (441)
++ |+.+||+.|.|+.+||+|..+.+++..++ .-|...+++|+|+++ +|++|+.|.-|.||.+...+.+..-+||.
T Consensus 299 S~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK---yIvtGGEDDLVtVwSf~erRVVARGqGHk 374 (636)
T KOG2394|consen 299 SP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK---YIVTGGEDDLVTVWSFEERRVVARGQGHK 374 (636)
T ss_pred cC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc---EEEecCCcceEEEEEeccceEEEeccccc
Confidence 87 99999999999999999998877654433 345678999999764 89999999999999999999999999999
Q ss_pred CCeEEEEEecC-----------------------------------------------CCcEEEEeecCCcEEEEEcCCC
Q 013545 191 DGIMTVEWSTS-----------------------------------------------SEWILVTGGCDGAIRFWDIRRA 223 (441)
Q Consensus 191 ~~v~~v~fsp~-----------------------------------------------~~~~l~s~s~Dg~I~iWD~~~~ 223 (441)
+.|..|+|.|- -.|.|.|.+.|-.+.+||+...
T Consensus 375 SWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 375 SWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred cceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 99999999820 1346788899999999998753
No 242
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=1.4e-08 Score=91.27 Aligned_cols=211 Identities=19% Similarity=0.263 Sum_probs=132.2
Q ss_pred eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCcee
Q 013545 148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF 226 (441)
Q Consensus 148 ~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~ 226 (441)
+..+++++. -..+|++..|..|++||-+. +....++ .....|+|++|-|.+...|+.|. .+-|.||....-...
T Consensus 101 lr~~aWhqH---~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 101 LRGVAWHQH---IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNA 175 (445)
T ss_pred eeeEeechh---hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCccccc
Confidence 455666663 34678888999999999877 3333343 34467999999999876666655 467999976421000
Q ss_pred eEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccC
Q 013545 227 RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA 306 (441)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 306 (441)
.... ... .. .+. ..-...+| .+
T Consensus 176 -----~r~~----------~~~----------------------------------s~-----~~~---qvl~~pgh-~p 197 (445)
T KOG2139|consen 176 -----NRNI----------RMM----------------------------------ST-----HHL---QVLQDPGH-NP 197 (445)
T ss_pred -----cccc----------ccc----------------------------------cc-----cch---hheeCCCC-ce
Confidence 0000 000 00 000 00011244 57
Q ss_pred eEEEEEccCCCEEEEeecC-CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEc---cCC
Q 013545 307 VTGLKVTEDGMYLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDI---WSG 381 (441)
Q Consensus 307 v~~l~~s~dg~~l~sgs~D-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~---~~~ 381 (441)
|++|.|.+||..+++++.+ ..|.|||+.++..... .....+....+.++||+..++.+.. ...++|+. |+.
T Consensus 198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL----~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~ 273 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL----IPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTK 273 (445)
T ss_pred eeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc----cccCCCceeeEEEcCCCCEEEEecccceeeeehhccccee
Confidence 9999999999999998765 5799999998764321 1223445557889999999988765 56789954 433
Q ss_pred ceEeeecccccceEEEEEcCCCCeEE-EeecCCcEEEeCCCCCCCCCccC
Q 013545 382 KTCLTFRGHYEYVNCCCFSSQDQELY-TGGNDRQILVWCPSRHISDGVDA 430 (441)
Q Consensus 382 ~~~~~l~gh~~~v~~v~fspd~~~l~-s~s~D~~i~vW~~~~~~~~~~~~ 430 (441)
+.-.... +.|..-.|+|+|++|+ +++.. -+++..+-.-..++..
T Consensus 274 erw~lgs---grvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~ 318 (445)
T KOG2139|consen 274 ERWILGS---GRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFL 318 (445)
T ss_pred cceeccC---CceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCcccc
Confidence 3323333 4899999999999866 44333 3556555444443433
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.08 E-value=6.9e-10 Score=96.92 Aligned_cols=163 Identities=21% Similarity=0.324 Sum_probs=118.1
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
..+|.-+.+.+.|+..+.+.+.||+.|+.+.-||+.-.... + .++.+-|..+|.++..+|+.+.+
T Consensus 161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-----------i----~~n~kvH~~GV~SI~ss~~~~~~ 225 (339)
T KOG0280|consen 161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-----------I----WHNSKVHTSGVVSIYSSPPKPTY 225 (339)
T ss_pred ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-----------e----eecceeeecceEEEecCCCCCce
Confidence 35799999999999777789999999999999998732211 1 12234688899999999999999
Q ss_pred EEEEeCCCcEEEEECC-CCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-----eeeeecCCCCC
Q 013545 119 FVTGSYDHYVKVWDTN-CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-----ISQTLSGHRDG 192 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-----~~~~l~~h~~~ 192 (441)
++||++|..|++||.+ -++++..-+..|.|.++..+|... +.+|+++-. +-.+|.+.+.+. .....+.|.+.
T Consensus 226 I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~-~~lL~~CMh-~G~ki~~~~~~~~e~~~~~~s~~~hdSl 303 (339)
T KOG0280|consen 226 IATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF-HRLLAACMH-NGAKILDSSDKVLEFQIVLPSDKIHDSL 303 (339)
T ss_pred EEEeccccceeeeehhcccCccccCccccceEEEEecchhh-hHHHHHHHh-cCceEEEecccccchheeeeccccccce
Confidence 9999999999999998 467777777788999999888654 334554433 447777776543 23445678777
Q ss_pred eEEEEEecCCCcEEEEeec-CCcEE-EEE
Q 013545 193 IMTVEWSTSSEWILVTGGC-DGAIR-FWD 219 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~-Dg~I~-iWD 219 (441)
+....|... ..+|+||+. |+.|+ +|-
T Consensus 304 ~YG~DWd~~-~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 304 CYGGDWDSK-DSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred eeccccccc-cceeeeeeccccceeeeee
Confidence 777777333 246788763 55534 563
No 244
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.08 E-value=2.3e-07 Score=100.08 Aligned_cols=256 Identities=15% Similarity=0.208 Sum_probs=154.4
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---------------eeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545 109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---------------KVYRTAMSPLAASHMLIAAGTEDVQVR 173 (441)
Q Consensus 109 ~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~las~s~d~~I~ 173 (441)
+++.+.++.++++-+..+.|++||.. +..+..+...+ ....+++.+. ++.+.++-..++.|+
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENHALR 649 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCceEE
Confidence 45555456788888889999999985 44443332211 1133444432 233444445567899
Q ss_pred EEECCCCceeeeecC--C---------------CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccc
Q 013545 174 LCDIASGAISQTLSG--H---------------RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL 236 (441)
Q Consensus 174 vwdl~~~~~~~~l~~--h---------------~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~ 236 (441)
++|+.++.. .++.+ . -.....++|+|++..++++.+.++.|++||...+... .+...
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~---- 723 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGD---- 723 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecC----
Confidence 999987653 33321 0 1134689999965567888888999999998765321 11000
Q ss_pred cCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC
Q 013545 237 GRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG 316 (441)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 316 (441)
+. ..... +... ..........|+++|++
T Consensus 724 -------------------------------G~--~~~~~------g~~~-------------~~~~~~~P~GIavspdG 751 (1057)
T PLN02919 724 -------------------------------GY--ERNLN------GSSG-------------TSTSFAQPSGISLSPDL 751 (1057)
T ss_pred -------------------------------Cc--cccCC------CCcc-------------ccccccCccEEEEeCCC
Confidence 00 00000 0000 00111235679999998
Q ss_pred C-EEEEeecCCcEEEeeCCCCCceeeee-----ee--EE----------eccCcceEEEeeCCCcEEEEeCC-CceEEEE
Q 013545 317 M-YLLSAGSDSRIRLWDVESGRNTLVNF-----ET--VR----------LQTSKPIQLATTQDPAVVFVPCM-TAVKAFD 377 (441)
Q Consensus 317 ~-~l~sgs~D~~i~~wd~~~~~~~~~~~-----~~--~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd 377 (441)
. .+++.+.+++|++||+.++......- .. .. .....|..+++.+++.+.++... ..+++||
T Consensus 752 ~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD 831 (1057)
T PLN02919 752 KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLD 831 (1057)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEE
Confidence 7 56677888999999998764321100 00 00 01123556778888876555443 6899999
Q ss_pred ccCCceEeee-------------cccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 378 IWSGKTCLTF-------------RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 378 ~~~~~~~~~l-------------~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
..++...... .++-.....|+++++|+.+++-+.++.|++|++.++..
T Consensus 832 ~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 832 PATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 8776554221 12223578999999999999989999999999988764
No 245
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.06 E-value=5.1e-07 Score=84.65 Aligned_cols=270 Identities=12% Similarity=0.073 Sum_probs=157.7
Q ss_pred CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEe---------CCCcEEEEECCCCceeeeecCCC------
Q 013545 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT---------EDVQVRLCDIASGAISQTLSGHR------ 190 (441)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s---------~d~~I~vwdl~~~~~~~~l~~h~------ 190 (441)
++|.+.|..+++.+.++.......-. ++++.. .+.++.+ .+..|.+||+++.+.+..+.--.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~--~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGS--FFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCC--EEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 79999999999998888764333333 777643 3334444 57889999999999988776321
Q ss_pred -CCeEEEEEecCCCcEEEEe-ecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545 191 -DGIMTVEWSTSSEWILVTG-GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG 268 (441)
Q Consensus 191 -~~v~~v~fsp~~~~~l~s~-s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (441)
.....++++|+|++++++- +.+..|-+.|+.+++.+..+..... ...+ . ...........++
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-----~~vy-----~------t~e~~~~~~~~Dg 167 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-----YHIF-----P------TANDTFFMHCRDG 167 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-----cEEE-----E------ecCCccEEEeecC
Confidence 2234789999999776554 3389999999998876665432100 0000 0 0000000001111
Q ss_pred CCccccCcccccCCCCcccccCCCcc--cccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCCCcee-eeee
Q 013545 269 NGVRQSSVGRIPAKGSVRQRLHPGML--SSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRNTL-VNFE 344 (441)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~~~~~-~~~~ 344 (441)
.......+. .+... ...... ...... ...+ .|++ ||+++..... |+|.+.|+....... ....
T Consensus 168 ~~~~v~~d~----~g~~~--~~~~~vf~~~~~~v--~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~ 234 (352)
T TIGR02658 168 SLAKVGYGT----KGNPK--IKPTEVFHPEDEYL--INHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIE 234 (352)
T ss_pred ceEEEEecC----CCceE--EeeeeeecCCcccc--ccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceee
Confidence 111100000 00000 000000 000000 0111 3455 7887765555 999999976543211 1111
Q ss_pred eE-------EeccCcceEEEeeCCCcEEEEeC-----------CCceEEEEccCCceEeeecccccceEEEEEcCCCC-e
Q 013545 345 TV-------RLQTSKPIQLATTQDPAVVFVPC-----------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-E 405 (441)
Q Consensus 345 ~~-------~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~-~ 405 (441)
.. .........+++++++..+++.. ...+-++|..+++.+..+.. ...++.++||||++ +
T Consensus 235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPL 313 (352)
T ss_pred eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeE
Confidence 11 11223333488899998888742 14688999999998887763 24699999999999 8
Q ss_pred EEEee-cCCcEEEeCCCCCCCCCc
Q 013545 406 LYTGG-NDRQILVWCPSRHISDGV 428 (441)
Q Consensus 406 l~s~s-~D~~i~vW~~~~~~~~~~ 428 (441)
|++.. .+++|.+.|..+++....
T Consensus 314 lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 314 LYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred EEEeCCCCCcEEEEECcCCeEEee
Confidence 87655 678899999999875443
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=1.1e-07 Score=93.93 Aligned_cols=217 Identities=15% Similarity=0.122 Sum_probs=126.8
Q ss_pred cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC--CcEEEEECCCCceeeeecCCCCCeEEEEEecCCCc
Q 013545 127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED--VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW 204 (441)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d--~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~ 204 (441)
.|.++|...+...........+....++|++. .++.+...+ ..|.+||+.+++... +....+.+....|+|+++.
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~--~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGK--RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCC--EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence 47777876554433333445567778888653 333333222 469999999886533 3333444567899999987
Q ss_pred EEEEeecCC--cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545 205 ILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282 (441)
Q Consensus 205 ~l~s~s~Dg--~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (441)
++++.+.++ .|.+||+.++.....
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~l------------------------------------------------------ 282 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRV------------------------------------------------------ 282 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEc------------------------------------------------------
Confidence 766666666 466677765321110
Q ss_pred CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CC--cEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545 283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359 (441)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (441)
..+........|+|||+.|+..+. ++ .|.++|+.+++.... ...........++
T Consensus 283 ------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-----t~~~~~~~~~~~S 339 (430)
T PRK00178 283 ------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-----TFVGNYNARPRLS 339 (430)
T ss_pred ------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-----ecCCCCccceEEC
Confidence 001112334679999998765543 33 577778877653211 1111122335678
Q ss_pred CCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC-C--cEEEeCCCCCCC
Q 013545 360 QDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND-R--QILVWCPSRHIS 425 (441)
Q Consensus 360 ~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D-~--~i~vW~~~~~~~ 425 (441)
+++..++.... ..+.++|+.+++.. .+. +........|+|||++|+-.+.+ + .|.+.+.+....
T Consensus 340 pdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 340 ADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred CCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 89888766533 24778888877643 222 22223356899999998865543 3 366666654433
No 247
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.05 E-value=3.2e-08 Score=88.43 Aligned_cols=296 Identities=17% Similarity=0.271 Sum_probs=170.9
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCc--ccCCCCceeccceeEEeeccccc--CcccceeEEEEeeC-CCC
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT--DYEGGGHIAKHRSVFVVDKQHEH--GHKYAISSAIWYPV-DTG 117 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~~~~~~~-~~~ 117 (441)
..-|.++.|. ..|.+|+||..+|.|.++.-.... ++.-.+..+.|.+-+ .+++ .-...|..+.|.++ +..
T Consensus 25 adiis~vef~-~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEF----DYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 25 ADIISAVEFD-HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEF----DYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hcceeeEEee-cccceEeecCCCCeEEEeecccccccceeeeeeeeccCccc----chhhhhhhhhhhhhceecCCCCcc
Confidence 3678899998 468899999999999999653221 110000011111100 0110 11234666677653 345
Q ss_pred EEEEEeCCCcEEEEECCCCeEEE-EEecC-----CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee-cCCC
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVM-NFKMP-----GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHR 190 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l-~~h~ 190 (441)
.++....|++|++|.+....... .+..+ +.+.++..- ..+..|-.+.. .+.+.+ ..|+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p---------~~~~~~~~vea------~prRv~aNaHt 164 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP---------VEGRHDLEVEA------SPRRVYANAHT 164 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeece---------eeccccceeee------eeeeeccccce
Confidence 67777899999999886433211 11111 111111110 01111111100 122333 4699
Q ss_pred CCeEEEEEecCCCcEEEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN 269 (441)
Q Consensus 191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (441)
.-|.+++++.|.+. ++| +.|=.|.+|++.- ..++...+..
T Consensus 165 yhiNSIS~NsD~Et-~lS-ADdLRINLWnlei~d~sFnIVDIK------------------------------------- 205 (433)
T KOG1354|consen 165 YHINSISVNSDKET-FLS-ADDLRINLWNLEIIDQSFNIVDIK------------------------------------- 205 (433)
T ss_pred eEeeeeeecCccce-Eee-ccceeeeeccccccCCceeEEEcc-------------------------------------
Confidence 99999999999885 555 4688999999862 2222222110
Q ss_pred CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEeecCCcEEEeeCCCCCce---eeeeee
Q 013545 270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNT---LVNFET 345 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~~~~~---~~~~~~ 345 (441)
|. ....-..-|++..|||. .+.++-.|.-|+||+-|++..... ...++.
T Consensus 206 ---------------------P~------nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 206 ---------------------PA------NMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred ---------------------cc------CHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 00 00001123677789986 457777888999999999842110 001111
Q ss_pred EE---------eccCcceEEEeeCCCcEEEEeCCCceEEEEc-cCCceEeeeccccc------------ce---EEEEEc
Q 013545 346 VR---------LQTSKPIQLATTQDPAVVFVPCMTAVKAFDI-WSGKTCLTFRGHYE------------YV---NCCCFS 400 (441)
Q Consensus 346 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~-~~~~~~~~l~gh~~------------~v---~~v~fs 400 (441)
.. .....+..+.++++|.++++-.--++++||+ -..+++.++.-|.. .| ..|+||
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 00 0011233467888999998877789999999 55677777776642 12 558999
Q ss_pred CCCCeEEEeecCCcEEEeCCCCCC
Q 013545 401 SQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 401 pd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
-++.+++|||-....++++...+-
T Consensus 339 g~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 339 GNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred CCcceEecccccceEEEecCCCCc
Confidence 999999999999999999965443
No 248
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.04 E-value=3.3e-08 Score=94.31 Aligned_cols=206 Identities=18% Similarity=0.171 Sum_probs=137.1
Q ss_pred CCCCcEEEEeeCCCcEEEEECCCCcccCCCCceec--cceeEEeecccccCcccceeEEEE---eeCCCCEEEEEeCCCc
Q 013545 53 LTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAK--HRSVFVVDKQHEHGHKYAISSAIW---YPVDTGLFVTGSYDHY 127 (441)
Q Consensus 53 ~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~---~~~~~~~l~sgs~D~~ 127 (441)
|+...|+|....||.+||||..++.....-..+.+ ..+++..-.-...-..-...+..+ -..+..+++=|-..|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45567999999999999999887653211000000 000000000000000000000000 0124456777888999
Q ss_pred EEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCc
Q 013545 128 VKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW 204 (441)
Q Consensus 128 i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~ 204 (441)
|.++++..++....+. +.+.+..+..+. ...+|.|++.|..+.+|+..+...++...+.+..+.++..+||++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~---~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~- 157 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ---RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK- 157 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc---ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC-
Confidence 9999999998876665 345565554443 345899999999999999999999999999999999999999987
Q ss_pred EEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCC
Q 013545 205 ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGS 284 (441)
Q Consensus 205 ~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (441)
+++++| ++|++||+.+.+.+..
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~-------------------------------------------------------- 179 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVIT-------------------------------------------------------- 179 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEE--------------------------------------------------------
Confidence 567765 6999999987654433
Q ss_pred cccccCCCcccccccceeeccCeEEEEEccC-----CCEEEEe-ecCCcEEEeeCCC
Q 013545 285 VRQRLHPGMLSSQDRATAHYGAVTGLKVTED-----GMYLLSA-GSDSRIRLWDVES 335 (441)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~~l~sg-s~D~~i~~wd~~~ 335 (441)
+.+|.++|+++.|-.+ |.++.++ ..+.-+.+|-+..
T Consensus 180 ---------------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 180 ---------------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ---------------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 3578899999999877 6776654 5566678886654
No 249
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=2.4e-09 Score=100.94 Aligned_cols=176 Identities=18% Similarity=0.249 Sum_probs=120.5
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
++||+..|..++-- ++++-++|+|.|+|+++|.++..-.. +.+... +-+...|+.+|.++-+.. +-..
T Consensus 731 f~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~-----~~tsaC-----QfTY~aHkk~i~~igfL~-~lr~ 798 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDE-----IGTSAC-----QFTYQAHKKPIHDIGFLA-DLRS 798 (1034)
T ss_pred ccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCc-----ccccee-----eeEhhhccCcccceeeee-ccce
Confidence 56999988888753 46667999999999999998643211 111111 123357999999988875 4446
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee-----cCCC
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-----SGHR 190 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l-----~~h~ 190 (441)
++++ |+-|.+||.--++++.+.. -++.+..+..-+.-....++|.++...+|+++|.+.++....+ .+..
T Consensus 799 i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 799 IASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred eeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 6654 8999999987666654321 1122211222222223445666688899999999988765544 4556
Q ss_pred CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEe
Q 013545 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL 229 (441)
Q Consensus 191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~ 229 (441)
+.+.+++..|.|.+ ++.+=.+|.|.+-|.|+++.+..+
T Consensus 877 a~~R~iaVa~~GN~-lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNK-LAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred hheeEEEeccCcch-hhHHhcCCcEEEEecCCCceeccC
Confidence 77899999999987 577888999999999998765543
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=1.1e-07 Score=93.85 Aligned_cols=217 Identities=17% Similarity=0.171 Sum_probs=128.9
Q ss_pred cccceeEEEEeeCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC--cEEEEE
Q 013545 102 HKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCD 176 (441)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~sgs~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~--~I~vwd 176 (441)
+...+....|+| |++.|+..+.+ ..|.+||+.+++........+......++|++. .++.+...++ .|.++|
T Consensus 197 ~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~--~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 197 SREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS--KLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred CCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC--EEEEEEccCCCceEEEEE
Confidence 445566778887 78888776654 368889998887544333344444567777643 3444444444 688899
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCc--EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS 254 (441)
Q Consensus 177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~--I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (441)
+++++.. .+..+........|+|+++.+++++..++. |.++|+.+++..+..
T Consensus 274 ~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt------------------------- 327 (430)
T PRK00178 274 LASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT------------------------- 327 (430)
T ss_pred CCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-------------------------
Confidence 9988653 455566666778999999876666555554 444454433211000
Q ss_pred CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC-C--cEEEe
Q 013545 255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD-S--RIRLW 331 (441)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D-~--~i~~w 331 (441)
..+ .......|+|||++|+..+.+ + .|.+|
T Consensus 328 ---------------------------------------------~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~ 360 (430)
T PRK00178 328 ---------------------------------------------FVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQ 360 (430)
T ss_pred ---------------------------------------------cCC--CCccceEECCCCCEEEEEEccCCceEEEEE
Confidence 000 011235799999998876543 2 58889
Q ss_pred eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcC
Q 013545 332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 401 (441)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp 401 (441)
|+.+++.... . .........+++++..++.... ..+.++++ ++.....+..+.+.+...+|||
T Consensus 361 dl~tg~~~~l--t----~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 361 DLQRGSVRIL--T----DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI-NGRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ECCCCCEEEc--c----CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 9987653221 1 0111223468899888766533 23445555 3444445555556666677776
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=1.8e-08 Score=101.80 Aligned_cols=197 Identities=20% Similarity=0.249 Sum_probs=138.2
Q ss_pred ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEE-EEeeCCCCEEEEEe
Q 013545 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSA-IWYPVDTGLFVTGS 123 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~-~~~~~~~~~l~sgs 123 (441)
.|....+. -+++.++.+..+..+.|||.......... ....+..+ ..++ .-...+.-++++|+
T Consensus 89 wi~g~~l~-~e~k~i~l~~~~ns~~i~d~~~~~~~~~i--~~~er~~l-------------~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 89 WIFGAKLF-EENKKIALVTSRNSLLIRDSKNSSVLSKI--QSDERCTL-------------YSSLIIGDSAEELYIASGS 152 (967)
T ss_pred cccccchh-hhcceEEEEEcCceEEEEecccCceehhc--CCCceEEE-------------EeEEEEeccCcEEEEEecc
Confidence 33334443 24678999999999999998755432100 00000000 0111 12233456889999
Q ss_pred CCCcEEEEECCCC-eEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee-eecCCCCCeEEEEEecC
Q 013545 124 YDHYVKVWDTNCT-RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTVEWSTS 201 (441)
Q Consensus 124 ~D~~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~h~~~v~~v~fsp~ 201 (441)
-=+.|.+|+.... ......-+.|.++++.++.++ .++++.|+|.++++|++++++... +.-||+..|+.+.|+|+
T Consensus 153 v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg---~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n 229 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG---RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN 229 (967)
T ss_pred ccccEEEEeccccCCcceecccCCceEEEEEccCC---cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc
Confidence 9999999998632 233344567888888887754 589999999999999999998765 66799999999999997
Q ss_pred CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
.++|++.|-+.++|+..- ..+.+
T Consensus 230 ---~i~t~gedctcrvW~~~~-~~l~~----------------------------------------------------- 252 (967)
T KOG0974|consen 230 ---RIITVGEDCTCRVWGVNG-TQLEV----------------------------------------------------- 252 (967)
T ss_pred ---eeEEeccceEEEEEeccc-ceehh-----------------------------------------------------
Confidence 378999999999996531 11110
Q ss_pred CCCcccccCCCcccccccceeec-cCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545 282 KGSVRQRLHPGMLSSQDRATAHY-GAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~ 335 (441)
..+|. ..+..++.+++...++|++.|+++++|++..
T Consensus 253 ------------------y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 253 ------------------YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ------------------hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 11232 3488899999999999999999999999764
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=3.9e-07 Score=90.01 Aligned_cols=216 Identities=14% Similarity=0.107 Sum_probs=121.9
Q ss_pred cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC--CcEEEEECCCCceeeeecCCCCCeEEEEEecCCCc
Q 013545 127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED--VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW 204 (441)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d--~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~ 204 (441)
.|.++|...............+....++|++. .++.+...+ ..|.+||+.+++... +....+.....+|+|+++.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~--~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGR--KLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCC--EEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence 56677875544322223344566677888653 333333333 368999999886532 2222333457899999998
Q ss_pred EEEEeecCCc--EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545 205 ILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282 (441)
Q Consensus 205 ~l~s~s~Dg~--I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (441)
++++.+.++. |.++|+.++....
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~------------------------------------------------------- 300 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTR------------------------------------------------------- 300 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEE-------------------------------------------------------
Confidence 7777777776 5555654332100
Q ss_pred CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CC--cEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545 283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359 (441)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (441)
...+.......+|+|||+.|+..+. ++ .|.++|+.+++.... ..........+++
T Consensus 301 -----------------lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-----t~~g~~~~~~~~S 358 (448)
T PRK04792 301 -----------------ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-----TFEGEQNLGGSIT 358 (448)
T ss_pred -----------------CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-----ecCCCCCcCeeEC
Confidence 0011122345689999998775543 33 466677776653211 1111122335788
Q ss_pred CCCcEEEEeCC--C--ceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee-cCCc--EEEeCCCCCC
Q 013545 360 QDPAVVFVPCM--T--AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG-NDRQ--ILVWCPSRHI 424 (441)
Q Consensus 360 ~~~~~~~~~~~--~--~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s-~D~~--i~vW~~~~~~ 424 (441)
+|+..++.... . .+.++|+.+++.. .+... .......|+|||++|+-.+ .++. +.+++.+...
T Consensus 359 pDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~ 428 (448)
T PRK04792 359 PDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF 428 (448)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 99988766433 2 3455677777643 23322 1223458999999987544 3443 6666775443
No 253
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.96 E-value=1.1e-09 Score=68.23 Aligned_cols=39 Identities=38% Similarity=0.614 Sum_probs=36.6
Q ss_pred CceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 381 GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 381 ~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
|+++.++.+|.++|++|+|+|++.+|+||+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356789999999999999999999999999999999996
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=5.1e-07 Score=88.48 Aligned_cols=233 Identities=10% Similarity=0.116 Sum_probs=130.1
Q ss_pred cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC--CcEEEEECCCCceeeeecCCCCCeEEEEEecCCCc
Q 013545 127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED--VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW 204 (441)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d--~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~ 204 (441)
.|.+.|...+.........+....-.|+|++....++.+...+ ..|.+.++.+++.. .+....+.....+|+|||+.
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCE
Confidence 5666676544432211123344556788876533333343333 46888899888643 33334445567899999987
Q ss_pred EEEEeecCC----cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCccccc
Q 013545 205 ILVTGGCDG----AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 280 (441)
Q Consensus 205 ~l~s~s~Dg----~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (441)
++++...+| .+.+||+..+.. .
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~------------g------------------------------------------ 270 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAI------------G------------------------------------------ 270 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCC------------C------------------------------------------
Confidence 766554333 333355432100 0
Q ss_pred CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEe--eCCCCCceeeeeeeEEeccCcceEEE
Q 013545 281 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLW--DVESGRNTLVNFETVRLQTSKPIQLA 357 (441)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (441)
. ...+ ...+.+.....+|+|||+.|+..+ .++...+| ++....... ..+...........
T Consensus 271 ---~-~~~l----------t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~---~~lt~~~~~~~~p~ 333 (428)
T PRK01029 271 ---K-PRRL----------LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP---RLLTKKYRNSSCPA 333 (428)
T ss_pred ---c-ceEe----------ecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce---EEeccCCCCcccee
Confidence 0 0000 000112234568999999887655 46655555 443211111 11111112334567
Q ss_pred eeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEE-eec--CCcEEEeCCCCCCCCCccC
Q 013545 358 TTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT-GGN--DRQILVWCPSRHISDGVDA 430 (441)
Q Consensus 358 ~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s-~s~--D~~i~vW~~~~~~~~~~~~ 430 (441)
++||+..++.... ..+.+||+.+++... +......+....|+|||++|+- +.. ...|.+|++.++....+..
T Consensus 334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 8999987766432 368899998887643 3333446788999999998874 333 3468888998887665554
Q ss_pred Cc
Q 013545 431 GP 432 (441)
Q Consensus 431 ~~ 432 (441)
+.
T Consensus 413 ~~ 414 (428)
T PRK01029 413 GS 414 (428)
T ss_pred CC
Confidence 43
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.91 E-value=1.9e-05 Score=75.38 Aligned_cols=276 Identities=18% Similarity=0.232 Sum_probs=156.2
Q ss_pred ceeEEEccCCCCcEEEEeeC----CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545 45 SINSLQVDLTEERYLLSGAS----DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~ 120 (441)
.-..|+++| ++++|.+... ++.|..|.+.... +.+.....+. ..| .....+.+.+ ++.+|+
T Consensus 38 ~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~-----g~L~~~~~~~------~~g--~~p~~i~~~~-~g~~l~ 102 (345)
T PF10282_consen 38 NPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDT-----GTLTLLNSVP------SGG--SSPCHIAVDP-DGRFLY 102 (345)
T ss_dssp SECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTT-----TEEEEEEEEE------ESS--SCEEEEEECT-TSSEEE
T ss_pred CCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCc-----ceeEEeeeec------cCC--CCcEEEEEec-CCCEEE
Confidence 345678886 4667766666 5789999876431 0111111110 001 1222345554 677777
Q ss_pred EEe-CCCcEEEEECCC-CeEEEE---Eec-----------CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--e
Q 013545 121 TGS-YDHYVKVWDTNC-TRVVMN---FKM-----------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--I 182 (441)
Q Consensus 121 sgs-~D~~i~iWd~~~-~~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~ 182 (441)
++. .+++|.++++.. +..... +.+ ..+...+.++|++ ..++++.-....|.+|++.... +
T Consensus 103 vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l 180 (345)
T PF10282_consen 103 VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKL 180 (345)
T ss_dssp EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TE
T ss_pred EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceE
Confidence 776 489999999976 443222 211 1335677777754 3445544455689999997654 3
Q ss_pred e--eeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545 183 S--QTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP 258 (441)
Q Consensus 183 ~--~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (441)
. ..+. ........+.|+|+++++++..-.+++|.++++.. ...+..+..... +
T Consensus 181 ~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~-------------~---------- 237 (345)
T PF10282_consen 181 TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST-------------L---------- 237 (345)
T ss_dssp EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES-------------C----------
T ss_pred EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee-------------c----------
Confidence 2 2222 33455789999999998888888889999999872 111111110000 0
Q ss_pred CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEE-eecCCcEEEeeCCCCC
Q 013545 259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS-AGSDSRIRLWDVESGR 337 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-gs~D~~i~~wd~~~~~ 337 (441)
+. ... .......|+++|||++|.+ .....+|.+|++....
T Consensus 238 --------------------------------~~------~~~-~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~ 278 (345)
T PF10282_consen 238 --------------------------------PE------GFT-GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT 278 (345)
T ss_dssp --------------------------------ET------TSC-SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred --------------------------------cc------ccc-ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC
Confidence 00 000 0124668899999998655 4567789999994322
Q ss_pred ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEc--cCCceEeeec-ccccceEEEEE
Q 013545 338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDI--WSGKTCLTFR-GHYEYVNCCCF 399 (441)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~--~~~~~~~~l~-gh~~~v~~v~f 399 (441)
..+............|..+++++++.++++++. ..+.+|++ .+|.+...-. -.-....||.|
T Consensus 279 g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 279 GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 222223333333445788999999999998865 47888876 4555433321 12334567665
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.90 E-value=4.1e-08 Score=87.81 Aligned_cols=245 Identities=19% Similarity=0.301 Sum_probs=153.4
Q ss_pred cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEEC-CCCeEEEEE--ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDT-NCTRVVMNF--KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwd 176 (441)
.||.+.|++...-|. .+-+++.+.|.++|+|-- ..++.-..+ .++.++....+.+. ...|..|-.+|++.-+.
T Consensus 21 eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e---~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE---SRRLYVGQDNGTVTEFA 96 (404)
T ss_pred cCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc---ceEEEEEEecceEEEEE
Confidence 478888888777664 456899999999999943 233332222 23555555555543 24677888889988887
Q ss_pred CCC----CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeE--eccCCccccCCCCccccccccc
Q 013545 177 IAS----GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV--LDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 177 l~~----~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
+.. -...+....|...|..+-|+-..+++ ++.+.|..+.-=-.+.+..+.- ++...
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V-~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~----------------- 158 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWV-LSTGKDKQFAWHCTESGNRLGGYNFETPA----------------- 158 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeE-EEeccccceEEEeeccCCcccceEeeccC-----------------
Confidence 643 23445567899999999999887764 6888887665333333221110 00000
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCc-ccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEE
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV-RQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIR 329 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~ 329 (441)
..... +.. ..+ +|.- .+.+ .-++.+..........+|.+++++++|.|....+.+|..|..+.
T Consensus 159 --------t~~~~---d~~-~~f--vGd~--~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi 222 (404)
T KOG1409|consen 159 --------SALQF---DAL-YAF--VGDH--SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVI 222 (404)
T ss_pred --------CCCce---eeE-EEE--eccc--ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceE
Confidence 00000 000 000 0000 0000 00111111222234578999999999999999999999999999
Q ss_pred EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe
Q 013545 330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG 409 (441)
Q Consensus 330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~ 409 (441)
+||+.-.+.. ..++.+|.+.|..+.--+--+.|.|+
T Consensus 223 ~wdigg~~g~--------------------------------------------~~el~gh~~kV~~l~~~~~t~~l~S~ 258 (404)
T KOG1409|consen 223 MWDIGGRKGT--------------------------------------------AYELQGHNDKVQALSYAQHTRQLISC 258 (404)
T ss_pred EEeccCCcce--------------------------------------------eeeeccchhhhhhhhhhhhheeeeec
Confidence 9998754321 13456788888877777777889999
Q ss_pred ecCCcEEEeCCCCCCCC
Q 013545 410 GNDRQILVWCPSRHISD 426 (441)
Q Consensus 410 s~D~~i~vW~~~~~~~~ 426 (441)
++|+.|.+|++.-.+..
T Consensus 259 ~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 259 GEDGGIVVWNMNVKRVE 275 (404)
T ss_pred cCCCeEEEEeccceeec
Confidence 99999999999865543
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.89 E-value=9.7e-08 Score=85.43 Aligned_cols=171 Identities=18% Similarity=0.345 Sum_probs=101.9
Q ss_pred CceeEEEccCCCC-cEEEEeeCCCcEEEEECCCCc-ccC-----CCCce-----------eccceeEEe--ecccccCcc
Q 013545 44 GSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRAT-DYE-----GGGHI-----------AKHRSVFVV--DKQHEHGHK 103 (441)
Q Consensus 44 ~~V~~l~~s~~~~-~~l~s~s~Dg~i~iwd~~~~~-~~~-----~~~~~-----------~~~~~~~~~--~~~~~~~h~ 103 (441)
..|+.+.|-++.+ ..++...+|.+|++|.+.... ..+ ..+.. ..+..++.. -+-...+|+
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4688888764432 345566699999999875322 110 00000 011111100 012345899
Q ss_pred cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe---EEEEEecC------CeeEEEeeccCCCCccEEEEEeCCCcEEE
Q 013545 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR---VVMNFKMP------GKVYRTAMSPLAASHMLIAAGTEDVQVRL 174 (441)
Q Consensus 104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~---~~~~~~~~------~~~~~~~~~~~~~~~~~las~s~d~~I~v 174 (441)
.-|+++.+.+ |.+.++|+ +|=.|.+|.++--. -+..++.. .-+.+..|+|... ++++-+++.|+|++
T Consensus 165 yhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c--n~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 165 YHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC--NVFVYSSSKGTIRL 240 (433)
T ss_pred eEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc--cEEEEecCCCcEEE
Confidence 9999998876 77778776 78899999875211 12222211 1244556776543 46666778899999
Q ss_pred EECCCCcee----eee------------cCCCCCeEEEEEecCCCcEEEEeecC-CcEEEEEcC
Q 013545 175 CDIASGAIS----QTL------------SGHRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIR 221 (441)
Q Consensus 175 wdl~~~~~~----~~l------------~~h~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~ 221 (441)
.|++...+. +.+ .+--..|..+.|+++|+++ +| .| -+|++||+.
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryi-ls--RDyltvk~wD~n 301 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYI-LS--RDYLTVKLWDLN 301 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEE-EE--eccceeEEEecc
Confidence 999854321 111 1122457789999999864 43 45 799999985
No 258
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.87 E-value=1.1e-08 Score=99.66 Aligned_cols=161 Identities=16% Similarity=0.347 Sum_probs=111.8
Q ss_pred CceeEEEccCCCC--cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545 44 GSINSLQVDLTEE--RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (441)
Q Consensus 44 ~~V~~l~~s~~~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 121 (441)
-.|-..+|+|... -++++.+.-. -.||++..... +.| .-...||+.+|+.+.|.+...+++++
T Consensus 68 w~vad~qws~h~a~~~wiVsts~qk-aiiwnlA~ss~----------~aI----ef~lhghsraitd~n~~~q~pdVlat 132 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTSNQK-AIIWNLAKSSS----------NAI----EFVLHGHSRAITDINFNPQHPDVLAT 132 (1081)
T ss_pred chhcceecccCCCCceeEEecCcch-hhhhhhhcCCc----------cce----EEEEecCccceeccccCCCCCcceee
Confidence 3577778876543 3577776644 46899864321 111 11245899999999999998999999
Q ss_pred EeCCCcEEEEECCCCeE-EEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCeEEEEE
Q 013545 122 GSYDHYVKVWDTNCTRV-VMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTVEW 198 (441)
Q Consensus 122 gs~D~~i~iWd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v~~v~f 198 (441)
++-|..+..||+++... +-.+.. ......+.+.-. ....+|+ +....|++||+.-| .++..+++|...|..++|
T Consensus 133 csvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk--~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~f 209 (1081)
T KOG0309|consen 133 CSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYK--DPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDF 209 (1081)
T ss_pred ccccccceeeeccCCCcceeeeecccccCceeeeccc--Ccchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHH
Confidence 99999999999986543 221111 111223334332 2234554 45678999999766 577889999999999999
Q ss_pred ecCCCcEEEEeecCCcEEEEEcCC
Q 013545 199 STSSEWILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 199 sp~~~~~l~s~s~Dg~I~iWD~~~ 222 (441)
..-....+++++.|++|++||-.+
T Consensus 210 nr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 210 NRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred hhhhhhhhcccCCCCceeeecccc
Confidence 876555678999999999999653
No 259
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.80 E-value=4.3e-06 Score=74.70 Aligned_cols=335 Identities=15% Similarity=0.143 Sum_probs=159.2
Q ss_pred CceeEEEccCCCCcE-EEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 44 GSINSLQVDLTEERY-LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
..|..+.|.. +..+ |-....|+.|++|++...+-+ ..++ .-..++.+..|+|....+|.+.
T Consensus 49 dki~yieW~a-ds~~ilC~~yk~~~vqvwsl~Qpew~------------ckId-----eg~agls~~~WSPdgrhiL~ts 110 (447)
T KOG4497|consen 49 DKIVYIEWKA-DSCHILCVAYKDPKVQVWSLVQPEWY------------CKID-----EGQAGLSSISWSPDGRHILLTS 110 (447)
T ss_pred HHhhheeeec-cceeeeeeeeccceEEEEEeecceeE------------EEec-----cCCCcceeeeECCCcceEeeee
Confidence 4566777875 4445 455677889999998644321 0011 1223567788998544778888
Q ss_pred eCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEE-----------------------------------
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAG----------------------------------- 166 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~----------------------------------- 166 (441)
.-|-.|.+|.+.+.+.... +++ ..+...+|++++. ..|.+
T Consensus 111 eF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~---f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW 186 (447)
T KOG4497|consen 111 EFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQ---FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW 186 (447)
T ss_pred cceeEEEEEEeccceeEEe-cccccCceeEEECCCCc---eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence 8999999999987665321 111 1123334444331 11111
Q ss_pred -eCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCC--cc
Q 013545 167 -TEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPP--LL 243 (441)
Q Consensus 167 -s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~--~~ 243 (441)
-.++.+.+||.--.-.+..+. ..-.+..++|+|.++ +|+.|+-|+.+|+-+--+-+.+..+-..... ..+. ..
T Consensus 187 sPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~--~dp~~~~~ 262 (447)
T KOG4497|consen 187 SPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSY--HDPTLHLL 262 (447)
T ss_pred CCCCcEEEEecchhhheeeeee-eccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhc--cCchhhhh
Confidence 122345566632111111111 124578899999887 6899999999998764332222111000000 0000 00
Q ss_pred cccccccCccCCcCCCCCCcccCCCCCccccCccccc-CCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEe
Q 013545 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP-AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA 322 (441)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 322 (441)
........+.... ...+.+........+..... ........++.-.. ..+.... .-.+.-++|++|..|++|-
T Consensus 263 ~ke~~~~~ql~~~----cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp-~tD~pnP-k~g~g~lafs~Ds~y~aTr 336 (447)
T KOG4497|consen 263 EKETFSIVQLLHH----CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP-PTDFPNP-KCGAGKLAFSCDSTYAATR 336 (447)
T ss_pred hhhhcchhhhccc----ccccCCCccccCccccchhhhhhhhcceeeecccC-CCCCCCc-ccccceeeecCCceEEeee
Confidence 0000000000000 00000000000000000000 00000000000000 0000111 2236678999999999887
Q ss_pred ecC--CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEE-EeCCCceEEEEccCCceEeeecccccceEEEEE
Q 013545 323 GSD--SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVF-VPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF 399 (441)
Q Consensus 323 s~D--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f 399 (441)
... ..+.+||+...+. .++-.+-..+..+...|.-..++ ..+...+..|...- .......+..-.|..+.|
T Consensus 337 nd~~PnalW~Wdlq~l~l-----~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg-~~~V~vP~~GF~i~~l~W 410 (447)
T KOG4497|consen 337 NDKYPNALWLWDLQNLKL-----HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG-PRVVGVPKKGFNIQKLQW 410 (447)
T ss_pred cCCCCceEEEEechhhhh-----hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC-ceEEecCCCCceeeeEEe
Confidence 443 4689999987542 11111112223334444433333 33334566666533 222222223345999999
Q ss_pred cCCCCeEEEeecCCcEE
Q 013545 400 SSQDQELYTGGNDRQIL 416 (441)
Q Consensus 400 spd~~~l~s~s~D~~i~ 416 (441)
.-+|..++-++.|.-..
T Consensus 411 ~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 411 LQPGEFIVLCGKDAFCV 427 (447)
T ss_pred cCCCcEEEEEcCCceEE
Confidence 99999999999997543
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.80 E-value=1.4e-05 Score=86.59 Aligned_cols=276 Identities=17% Similarity=0.234 Sum_probs=153.3
Q ss_pred EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE-EEEeCCC
Q 013545 48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDH 126 (441)
Q Consensus 48 ~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l-~sgs~D~ 126 (441)
.+++++.+++++++-+..+.|++||.........++. ..... .+.....++-.....+++.+ +++.| ++-...+
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~--g~~G~--~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~ 646 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST--GEEGL--RDGSFEDATFNRPQGLAYNA-KKNLLYVADTENH 646 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC--CCcCC--CCCchhccccCCCcEEEEeC-CCCEEEEEeCCCc
Confidence 5777765677888989999999999753221000000 00000 00000001111233456655 45544 4445567
Q ss_pred cEEEEECCCCeEEEEEecC------------------CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC
Q 013545 127 YVKVWDTNCTRVVMNFKMP------------------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG 188 (441)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~ 188 (441)
.|+.+|+.++... ++... .....+++++. +..++++...++.|++||..++... .+.+
T Consensus 647 ~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~--~g~LyVad~~~~~I~v~d~~~g~v~-~~~G 722 (1057)
T PLN02919 647 ALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV--NEKVYIAMAGQHQIWEYNISDGVTR-VFSG 722 (1057)
T ss_pred eEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecC--CCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence 8999998876643 22110 01234555553 2346667777899999999877542 2211
Q ss_pred ---------C------CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545 189 ---------H------RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN 253 (441)
Q Consensus 189 ---------h------~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (441)
+ -.....++|+|+++.++++-+.++.|++||+.++...-.. . ..+..
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~-g------g~~~~----------- 784 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA-G------GDPTF----------- 784 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE-e------ccccc-----------
Confidence 1 1234679999998877888888899999998865321100 0 00000
Q ss_pred CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeC
Q 013545 254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 333 (441)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~ 333 (441)
.. ....+ +..+ +. . .........+|+++++|..+++-+.+++|++||.
T Consensus 785 -~~------------~l~~f---------G~~d-----G~-g----~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~ 832 (1057)
T PLN02919 785 -SD------------NLFKF---------GDHD-----GV-G----SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDP 832 (1057)
T ss_pred -Cc------------ccccc---------cCCC-----Cc-h----hhhhccCCceeeEeCCCcEEEEECCCCEEEEEEC
Confidence 00 00000 0000 00 0 0001122457899999999999999999999999
Q ss_pred CCCCceeeeeee----------EEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCce
Q 013545 334 ESGRNTLVNFET----------VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKT 383 (441)
Q Consensus 334 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~ 383 (441)
.++..... ... .......|..+++.+++.++++... ..+++||+.+++.
T Consensus 833 ~tg~v~ti-aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 833 ATKRVTTL-AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCeEEEE-eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 87643211 000 0011235667888899986655544 6899999988764
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=3.5e-06 Score=82.64 Aligned_cols=217 Identities=11% Similarity=0.071 Sum_probs=122.8
Q ss_pred eeEEEEeeCCCCE--E-EEEeCCCc--EEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC----CCcEEEEE
Q 013545 106 ISSAIWYPVDTGL--F-VTGSYDHY--VKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE----DVQVRLCD 176 (441)
Q Consensus 106 V~~~~~~~~~~~~--l-~sgs~D~~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~----d~~I~vwd 176 (441)
+.+-.|+| ||.. + ++...++. |.+.++.+++........+......++|++. .++.+... +-.+..|+
T Consensus 187 ~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~--~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 187 SITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK--LLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred cccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC--EEEEEECCCCCcceeEEEee
Confidence 34457777 6653 2 24444444 6666887776544444555556677888754 33333322 22344478
Q ss_pred CCCC---ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC---ceeeEeccCCccccCCCCccccccccc
Q 013545 177 IASG---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA---GCFRVLDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 177 l~~~---~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
+.++ +..+...++.+......|+|||+.++.+...+|..++|.+... +...
T Consensus 264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~----------------------- 320 (428)
T PRK01029 264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR----------------------- 320 (428)
T ss_pred cccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE-----------------------
Confidence 7653 3333333333445678999999876555556777777754310 0000
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC---Cc
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD---SR 327 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D---~~ 327 (441)
....+...+....|||||+.|+..+.+ ..
T Consensus 321 ------------------------------------------------~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~ 352 (428)
T PRK01029 321 ------------------------------------------------LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQ 352 (428)
T ss_pred ------------------------------------------------EeccCCCCccceeECCCCCEEEEEEcCCCCcE
Confidence 000111234567899999988866543 46
Q ss_pred EEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEcCC
Q 013545 328 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ 402 (441)
Q Consensus 328 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd 402 (441)
|.+||+.+++.... ...........+++|+..++.... ..+.++++..++..... ...+.+...+|||-
T Consensus 353 I~v~dl~~g~~~~L-----t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 353 ICVYDLATGRDYQL-----TTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred EEEEECCCCCeEEc-----cCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence 99999988763221 101112334678899887664322 35777788776644333 34455667777774
No 262
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.2e-07 Score=86.04 Aligned_cols=271 Identities=14% Similarity=0.172 Sum_probs=166.7
Q ss_pred CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 121 (441)
|...|+.+.-+ -.++++++|.||.++.|--..-+. ... -.+...|-..|.+++.+- ++-++.|
T Consensus 8 hrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isG-------------vEf-VKhFraHL~~I~sl~~S~-dg~L~~S 70 (558)
T KOG0882|consen 8 HRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISG-------------VEF-VKHFRAHLGVILSLAVSY-DGWLFRS 70 (558)
T ss_pred ccceeeeEeee--hhheEEeeecchhhhhcCCCCccc-------------eee-hhhhHHHHHHHHhhhccc-cceeEee
Confidence 77788877665 357999999999999996432110 000 124456777777666554 7878899
Q ss_pred EeC-CCcEEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeee-cCCCCCeEE
Q 013545 122 GSY-DHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTL-SGHRDGIMT 195 (441)
Q Consensus 122 gs~-D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l-~~h~~~v~~ 195 (441)
.+. |+.+|++|+++-..+.-++ +++.+..+. ++-.....+.++.-.++.|.++|-.... ....+ .-|..+|.+
T Consensus 71 v~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~ 149 (558)
T KOG0882|consen 71 VEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKK 149 (558)
T ss_pred ccCcccceeEEEeeccchhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEE
Confidence 888 9999999998766553333 344332221 1111112233344467899999975543 22233 359999999
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
+.++|.++. ++|....|.|.-|.... .++..+.. ..
T Consensus 150 i~y~qa~Ds-~vSiD~~gmVEyWs~e~--~~qfPr~~-------------------l~---------------------- 185 (558)
T KOG0882|consen 150 IRYNQAGDS-AVSIDISGMVEYWSAEG--PFQFPRTN-------------------LN---------------------- 185 (558)
T ss_pred EEeeccccc-eeeccccceeEeecCCC--cccCcccc-------------------cc----------------------
Confidence 999999885 67888889999998652 11110000 00
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeee-------------
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN------------- 342 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~------------- 342 (441)
+.+.....+.. .........++.|+|+|..+.+-+.|..||++++.+++.....
T Consensus 186 -~~~K~eTdLy~------------f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks 252 (558)
T KOG0882|consen 186 -FELKHETDLYG------------FPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKS 252 (558)
T ss_pred -ccccccchhhc------------ccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccc
Confidence 00000000000 0111244678999999999999999999999999987632210
Q ss_pred ---eeeEEe-------------ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeee
Q 013545 343 ---FETVRL-------------QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF 387 (441)
Q Consensus 343 ---~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l 387 (441)
+..+.+ ....-....+..++..++.+..-+++++++.++.....+
T Consensus 253 ~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 253 PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL 313 (558)
T ss_pred ccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence 000110 001112356667788888888889999999887765543
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.77 E-value=1.4e-05 Score=77.50 Aligned_cols=270 Identities=17% Similarity=0.124 Sum_probs=153.3
Q ss_pred CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 013545 56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC 135 (441)
Q Consensus 56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~ 135 (441)
++.++.++.+|.+.-+|..+++.. .. .. ....... .... +++.++.++.|+.+..+|..+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~------W~------~~--~~~~~~~---~p~v---~~~~v~v~~~~g~l~ald~~t 124 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRL------WR------VD--LDERLSG---GVGA---DGGLVFVGTEKGEVIALDAED 124 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEe------ee------ec--CCCCccc---ceEE---cCCEEEEEcCCCEEEEEECCC
Confidence 347888889999999998877531 00 00 0000111 1111 356788888999999999999
Q ss_pred CeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe-----EEEEEecCCCcEEEEee
Q 013545 136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-----MTVEWSTSSEWILVTGG 210 (441)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v-----~~v~fsp~~~~~l~s~s 210 (441)
|+.+......+.+...... .+ ..+..++.++.+..+|.++|+.+..+....... .+.... ++ .++.+.
T Consensus 125 G~~~W~~~~~~~~~~~p~v---~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~--~v~~~~ 197 (377)
T TIGR03300 125 GKELWRAKLSSEVLSPPLV---AN-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG--GVLVGF 197 (377)
T ss_pred CcEeeeeccCceeecCCEE---EC-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC--EEEEEC
Confidence 9988777666544322111 12 245566778999999999999877665432211 111122 22 356677
Q ss_pred cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccC
Q 013545 211 CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH 290 (441)
Q Consensus 211 ~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (441)
.++.+..+|.++++..-....... . +. ....
T Consensus 198 ~~g~v~ald~~tG~~~W~~~~~~~-~-------------------------------g~-------------~~~~---- 228 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQRVALP-K-------------------------------GR-------------TELE---- 228 (377)
T ss_pred CCCEEEEEEccCCCEeeeeccccC-C-------------------------------CC-------------Cchh----
Confidence 789999999887643211000000 0 00 0000
Q ss_pred CCcccccccceee-ccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC
Q 013545 291 PGMLSSQDRATAH-YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC 369 (441)
Q Consensus 291 ~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (441)
..... ..++ + .+..+..++.++.++.||..+++.... .. . ......+ .++..+++..
T Consensus 229 --------~~~~~~~~p~----~--~~~~vy~~~~~g~l~a~d~~tG~~~W~-~~---~--~~~~~p~--~~~~~vyv~~ 286 (377)
T TIGR03300 229 --------RLVDVDGDPV----V--DGGQVYAVSYQGRVAALDLRSGRVLWK-RD---A--SSYQGPA--VDDNRLYVTD 286 (377)
T ss_pred --------hhhccCCccE----E--ECCEEEEEEcCCEEEEEECCCCcEEEe-ec---c--CCccCce--EeCCEEEEEC
Confidence 00000 0111 1 244677788899999999998864321 11 1 1111111 1234444443
Q ss_pred -CCceEEEEccCCceEeeeccccc-ceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 370 -MTAVKAFDIWSGKTCLTFRGHYE-YVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 370 -~~~~~~wd~~~~~~~~~l~gh~~-~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
.+.+..+|..+|+.+-....... ....... .+..|+.++.|+.|.+|+..+++.
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 46899999999887755422111 1222222 367888999999999999987764
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.73 E-value=7.5e-08 Score=102.34 Aligned_cols=193 Identities=18% Similarity=0.225 Sum_probs=130.8
Q ss_pred cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc
Q 013545 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA 181 (441)
Q Consensus 104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~ 181 (441)
..|.++..+| ...+.+||+.|+.|++|.-..++.+..+...| ++.+..|+..+ ..+..+-.||.+-+|... .+
T Consensus 2209 ~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG---nk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2209 ENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG---NKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred CceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC---CceeeeccCCceeecccC-Cc
Confidence 3455555555 35688999999999999988888777776544 34455555543 346667789999999987 66
Q ss_pred eeeeecCCCCCeEEEEEecCCCcEEEEee---cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545 182 ISQTLSGHRDGIMTVEWSTSSEWILVTGG---CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP 258 (441)
Q Consensus 182 ~~~~l~~h~~~v~~v~fsp~~~~~l~s~s---~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (441)
+....+.|........|... ++++++ .++.+.+||.-.....
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~-------------------------------- 2328 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMN-------------------------------- 2328 (2439)
T ss_pred ceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCccc--------------------------------
Confidence 66677789988888888863 456654 4678999996421000
Q ss_pred CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545 259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN 338 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~ 338 (441)
. -...+|.+.++++++-|.-+.|+|||.+|.|++||+...+.
T Consensus 2329 -------------------------s-------------~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2329 -------------------------S-------------LVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred -------------------------c-------------eeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 0 01257888999999999999999999999999999986442
Q ss_pred eeeeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeec
Q 013545 339 TLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFR 388 (441)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~ 388 (441)
. ++.. . .. ...+++.+. .+.++||++..-.+++++.
T Consensus 2371 ~----h~~~--~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2371 R----HTFQ--A-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred H----HHhh--h-------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 1 1100 0 01 111222332 3567777777666666554
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.72 E-value=2.6e-07 Score=84.43 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=96.1
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCe----EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC
Q 013545 114 VDTGLFVTGSYDHYVKVWDTNCTR----VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH 189 (441)
Q Consensus 114 ~~~~~l~sgs~D~~i~iWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h 189 (441)
+++.++|.+-.++...+.+..... ++.....+.....+.+.....+..+.-.++....+.+|....+. ...+-||
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGh 150 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGH 150 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhh
Confidence 356677777666665555543222 22222222222333333333222333344555667777766543 3345699
Q ss_pred CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN 269 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (441)
.+.++.|+++||++ +++++..|..||+=.....-.
T Consensus 151 vSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~-------------------------------------------- 185 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFV-------------------------------------------- 185 (390)
T ss_pred hhhhheeeecCCCC-EEEEecCCceEEEEecCcccc--------------------------------------------
Confidence 99999999999997 568999999998765321000
Q ss_pred CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545 270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN 338 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~ 338 (441)
......||...|..+++-++. .|+|||.|++|++||+.+++.
T Consensus 186 --------------------------IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 186 --------------------------IESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred --------------------------hhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCc
Confidence 001135788889999987654 589999999999999999875
No 266
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=6.3e-07 Score=85.40 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=85.0
Q ss_pred ccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe------------eEEEeeccCCCCccEEEEEeCCC
Q 013545 103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK------------VYRTAMSPLAASHMLIAAGTEDV 170 (441)
Q Consensus 103 ~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~las~s~d~ 170 (441)
.++++++...+. ..+|++|+.|+.|.+||.++...+..+..... +.++.|..+ ..-+++|+.+|
T Consensus 175 ~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~---gL~~aVGts~G 250 (703)
T KOG2321|consen 175 SGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD---GLHVAVGTSTG 250 (703)
T ss_pred cccceeeeecCc-cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC---ceeEEeeccCC
Confidence 356777777764 45889999999999999988776655544322 555555543 45789999999
Q ss_pred cEEEEECCCCceeeeec-CCCCCeEEEEEecCCC-cEEEEeecCCcEEEEEcCCCceee
Q 013545 171 QVRLCDIASGAISQTLS-GHRDGIMTVEWSTSSE-WILVTGGCDGAIRFWDIRRAGCFR 227 (441)
Q Consensus 171 ~I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~-~~l~s~s~Dg~I~iWD~~~~~~~~ 227 (441)
.|.+|||.+.+++..-. +..-+|..+.|.+.+. ..++|. ....++|||-.+++.+.
T Consensus 251 ~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 251 SVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMA 308 (703)
T ss_pred cEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCcee
Confidence 99999999988765432 3456678888877622 234554 34689999977765443
No 267
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.70 E-value=5e-08 Score=60.63 Aligned_cols=39 Identities=38% Similarity=0.865 Sum_probs=35.4
Q ss_pred CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219 (441)
Q Consensus 180 ~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD 219 (441)
++++.++.+|.+.|.+++|+|++. .|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 356788999999999999999977 589999999999997
No 268
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=0.00011 Score=66.92 Aligned_cols=279 Identities=10% Similarity=0.134 Sum_probs=158.9
Q ss_pred CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC---CCcEEEEECC--CCeEE
Q 013545 65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTN--CTRVV 139 (441)
Q Consensus 65 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~---D~~i~iWd~~--~~~~~ 139 (441)
++.|.+|++.+.+.. +.... ...+...++-+.+.+ +.+.|.++-. ++.|--+.+. +|+..
T Consensus 15 s~gI~v~~ld~~~g~-----l~~~~---------~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt 79 (346)
T COG2706 15 SQGIYVFNLDTKTGE-----LSLLQ---------LVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLT 79 (346)
T ss_pred CCceEEEEEeCcccc-----cchhh---------hccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEE
Confidence 577999998643311 11100 112334455677776 5667776654 4667766654 35532
Q ss_pred --EEEecCCee-EEEeeccCCCCccEEEEEeCCCcEEEEECCC-Cceeee--ecCCCCC----------eEEEEEecCCC
Q 013545 140 --MNFKMPGKV-YRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQT--LSGHRDG----------IMTVEWSTSSE 203 (441)
Q Consensus 140 --~~~~~~~~~-~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~--l~~h~~~----------v~~v~fsp~~~ 203 (441)
.....++.. ..+++..+ +..++.+.-.-+.|.++-++. |.+... +..|.+. +-+..|.|+++
T Consensus 80 ~ln~~~~~g~~p~yvsvd~~--g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~ 157 (346)
T COG2706 80 FLNRQTLPGSPPCYVSVDED--GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR 157 (346)
T ss_pred EeeccccCCCCCeEEEECCC--CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC
Confidence 222233332 33444443 334555555568999999965 543221 2234444 78899999998
Q ss_pred cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCC
Q 013545 204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG 283 (441)
Q Consensus 204 ~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (441)
++++..=.--.|.+|++..++....- .
T Consensus 158 ~l~v~DLG~Dri~~y~~~dg~L~~~~-~---------------------------------------------------- 184 (346)
T COG2706 158 YLVVPDLGTDRIFLYDLDDGKLTPAD-P---------------------------------------------------- 184 (346)
T ss_pred EEEEeecCCceEEEEEcccCcccccc-c----------------------------------------------------
Confidence 65433222236888888754311000 0
Q ss_pred CcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceeeeeee---EEe---ccCcceEE
Q 013545 284 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNFET---VRL---QTSKPIQL 356 (441)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~~~~~---~~~---~~~~~~~~ 356 (441)
..+.+ ..-.+-|.|+|++++.- ..=-+++|-+|........+..+.. +.. .......+
T Consensus 185 ---~~v~~------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 185 ---AEVKP------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred ---cccCC------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 00000 01245689999999753 4566889999998874222221111 111 12233457
Q ss_pred EeeCCCcEEEEeCCC--ceEEEEccC--Cce--EeeecccccceEEEEEcCCCCeEEEeecCC-cEEEe--CCCCCCCCC
Q 013545 357 ATTQDPAVVFVPCMT--AVKAFDIWS--GKT--CLTFRGHYEYVNCCCFSSQDQELYTGGNDR-QILVW--CPSRHISDG 427 (441)
Q Consensus 357 ~~~~~~~~~~~~~~~--~~~~wd~~~--~~~--~~~l~gh~~~v~~v~fspd~~~l~s~s~D~-~i~vW--~~~~~~~~~ 427 (441)
..++||.++++...+ .+-+|.+.. +++ +.....|...-....|+|+|++|+.+.+|. +|.++ |..++++..
T Consensus 250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 788999999987653 566666633 332 122333444468899999999999887764 68888 666777664
Q ss_pred c
Q 013545 428 V 428 (441)
Q Consensus 428 ~ 428 (441)
+
T Consensus 330 ~ 330 (346)
T COG2706 330 L 330 (346)
T ss_pred c
Confidence 3
No 269
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=4.9e-06 Score=79.36 Aligned_cols=116 Identities=9% Similarity=0.182 Sum_probs=87.3
Q ss_pred eccCeEEEEEccCCCEEEE--eecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEE
Q 013545 303 HYGAVTGLKVTEDGMYLLS--AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAF 376 (441)
Q Consensus 303 h~~~v~~l~~s~dg~~l~s--gs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~w 376 (441)
..++|.++.|+|+|+.++. |=.-..+.|+|++-. . ...+..+.-.++-++|.|.+++.++. +.+.+|
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~------v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-P------VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-E------eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 3689999999999987554 444567889988632 1 12334555667889999999988865 479999
Q ss_pred EccCCceEeeecccccceEEEEEcCCCCeEEEeec------CCcEEEeCCCCCCCCC
Q 013545 377 DIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN------DRQILVWCPSRHISDG 427 (441)
Q Consensus 377 d~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~------D~~i~vW~~~~~~~~~ 427 (441)
|+.+.+++..+..-. -+-+.|+|||++++|+.. |+.++||+....++..
T Consensus 342 Dv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~ 396 (566)
T KOG2315|consen 342 DVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE 396 (566)
T ss_pred eccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh
Confidence 999988877776443 466799999999997643 7889999997666553
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.63 E-value=3.3e-05 Score=74.87 Aligned_cols=258 Identities=13% Similarity=0.088 Sum_probs=145.3
Q ss_pred CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 013545 56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC 135 (441)
Q Consensus 56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~ 135 (441)
+..++.++.||.+..+|..+++.. .... -.+.+.+.... .++.++.++.|+.|..||.++
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~------W~~~------------~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~t 164 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKEL------WRAK------------LSSEVLSPPLV--ANGLVVVRTNDGRLTALDAAT 164 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEe------eeec------------cCceeecCCEE--ECCEEEEECCCCeEEEEEcCC
Confidence 346777888999999998776531 1000 00111111111 234677778899999999999
Q ss_pred CeEEEEEecCCeeEEEe--eccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC-C-C--------Ce-EEEEEecCC
Q 013545 136 TRVVMNFKMPGKVYRTA--MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH-R-D--------GI-MTVEWSTSS 202 (441)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h-~-~--------~v-~~v~fsp~~ 202 (441)
++.+.+++......... .+|...+ ..+..+..++.+..+|+++|+.+....-. . + .+ .+..+. +
T Consensus 165 G~~~W~~~~~~~~~~~~~~~sp~~~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~ 241 (377)
T TIGR03300 165 GERLWTYSRVTPALTLRGSASPVIAD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--G 241 (377)
T ss_pred CceeeEEccCCCceeecCCCCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--C
Confidence 99887766543322111 1111111 24567778899999999999876543211 0 0 01 111122 2
Q ss_pred CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545 203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282 (441)
Q Consensus 203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (441)
.. +..++.+|.+..||.++++..-..+
T Consensus 242 ~~-vy~~~~~g~l~a~d~~tG~~~W~~~---------------------------------------------------- 268 (377)
T TIGR03300 242 GQ-VYAVSYQGRVAALDLRSGRVLWKRD---------------------------------------------------- 268 (377)
T ss_pred CE-EEEEEcCCEEEEEECCCCcEEEeec----------------------------------------------------
Confidence 33 4567789999999987664211000
Q ss_pred CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCC
Q 013545 283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 362 (441)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (441)
. ....... .++..|..++.|+.+..+|..+++.... +.. +.......... .+
T Consensus 269 --------------------~-~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~-~~~--~~~~~~ssp~i--~g 320 (377)
T TIGR03300 269 --------------------A-SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWK-NDE--LKYRQLTAPAV--VG 320 (377)
T ss_pred --------------------c-CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEc-ccc--ccCCccccCEE--EC
Confidence 0 0000111 2355666778899999999988764221 111 11000001111 23
Q ss_pred cEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545 363 AVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418 (441)
Q Consensus 363 ~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW 418 (441)
..+++.+ .+.+.++|..+|+.+..+..+...+..--...++ .|+.++.||.|..+
T Consensus 321 ~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 3555543 4689999999999998888776544332222344 57788899988765
No 271
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.4e-07 Score=89.33 Aligned_cols=175 Identities=18% Similarity=0.255 Sum_probs=115.7
Q ss_pred eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ 262 (441)
Q Consensus 183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (441)
+..+.||...|..++-..+.. -|+|+|.|++|++|.++.... .+
T Consensus 728 L~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD---------~~-------------------------- 771 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGD---------EI-------------------------- 771 (1034)
T ss_pred eecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccC---------cc--------------------------
Confidence 456789999999887654443 478999999999999875210 00
Q ss_pred cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeee
Q 013545 263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN 342 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~ 342 (441)
+....+-...+|..+|.++.|-.+-+++++. |+-|.+||.-.++.....
T Consensus 772 -----------------------------~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~ 820 (1034)
T KOG4190|consen 772 -----------------------------GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQM 820 (1034)
T ss_pred -----------------------------ccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhh
Confidence 0000011234688899999999999998754 788999998876542211
Q ss_pred eeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeee-----cccccceEEEEEcCCCCeEEEeecCCcE
Q 013545 343 FETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTF-----RGHYEYVNCCCFSSQDQELYTGGNDRQI 415 (441)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l-----~gh~~~v~~v~fspd~~~l~s~s~D~~i 415 (441)
....+......+...-+-+..++..+|. .+|+.+|...++-..++ .+...-+.+++..|.|++++.|=..|+|
T Consensus 821 ~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci 900 (1034)
T KOG4190|consen 821 EDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCI 900 (1034)
T ss_pred hcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcE
Confidence 1111111122222222223334444443 68999998776543333 4555679999999999999999889999
Q ss_pred EEeCCCCCC
Q 013545 416 LVWCPSRHI 424 (441)
Q Consensus 416 ~vW~~~~~~ 424 (441)
-+-|..+++
T Consensus 901 ~~LDaR~G~ 909 (1034)
T KOG4190|consen 901 AILDARNGK 909 (1034)
T ss_pred EEEecCCCc
Confidence 999888776
No 272
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.57 E-value=4.6e-07 Score=96.57 Aligned_cols=155 Identities=17% Similarity=0.330 Sum_probs=104.2
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
-..|.++.-+|. ..+-+||+.||.+++|.-..+. +++. - ++. |. ..|+.+.|.. .|+.+..+
T Consensus 2208 v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~------------~v~~-~-rt~-g~-s~vtr~~f~~-qGnk~~i~ 2269 (2439)
T KOG1064|consen 2208 VENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQ------------QVVC-F-RTA-GN-SRVTRSRFNH-QGNKFGIV 2269 (2439)
T ss_pred cCceeeecCCCC-CceEEecCCCceEEEEeccCCC------------eEEE-e-ecc-Cc-chhhhhhhcc-cCCceeee
Confidence 367888887775 4588999999999999753321 1111 1 111 23 5566667765 57788889
Q ss_pred eCCCcEEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEE---eCCCcEEEEECCCC-ceeeeecCCCCCeEEEE
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAG---TEDVQVRLCDIASG-AISQTLSGHRDGIMTVE 197 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~---s~d~~I~vwdl~~~-~~~~~l~~h~~~v~~v~ 197 (441)
..||.+-+|.+. .++....+++.+ ..++.|-. .+++++ +.++.+.+||..-. .....-..|.+.+++++
T Consensus 2270 d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2270 DGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLA 2343 (2439)
T ss_pred ccCCceeecccC-CcceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEE
Confidence 999999999986 444444444322 22333322 234433 35778999996422 22122278999999999
Q ss_pred EecCCCcEEEEeecCCcEEEEEcCC
Q 013545 198 WSTSSEWILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 198 fsp~~~~~l~s~s~Dg~I~iWD~~~ 222 (441)
|.|..+ +|+|||.+|.|++||++.
T Consensus 2344 ~~P~~q-llisggr~G~v~l~D~rq 2367 (2439)
T KOG1064|consen 2344 YAPKHQ-LLISGGRKGEVCLFDIRQ 2367 (2439)
T ss_pred EcCcce-EEEecCCcCcEEEeehHH
Confidence 999876 789999999999999974
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.54 E-value=0.00011 Score=68.99 Aligned_cols=153 Identities=16% Similarity=0.234 Sum_probs=108.8
Q ss_pred ccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCC-cEE
Q 013545 51 VDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDH-YVK 129 (441)
Q Consensus 51 ~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~-~i~ 129 (441)
|++.+|++++..|. |...|.+.-.+-. + ..+|.+.|.-..+.. +++-++.|..|+ .+-
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-------------i------qv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~ 385 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-------------I------QVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLG 385 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCee-------------E------EcCCCCceEEEEEcc-CCcceEEeccCCceEE
Confidence 55556777777776 5555555432211 0 125666666555543 456788888888 899
Q ss_pred EEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEe
Q 013545 130 VWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTG 209 (441)
Q Consensus 130 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~ 209 (441)
|+|..+++.....+--+.+.++..++++. .++++.....+.+.|+++|+....-+...+-|+...|+|++++ +|-+
T Consensus 386 iyd~~~~e~kr~e~~lg~I~av~vs~dGK---~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~-iAYa 461 (668)
T COG4946 386 IYDKDGGEVKRIEKDLGNIEAVKVSPDGK---KVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRW-IAYA 461 (668)
T ss_pred EEecCCceEEEeeCCccceEEEEEcCCCc---EEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCcee-EEEe
Confidence 99999888665555556788888888653 6777888889999999999876555666788999999999986 4544
Q ss_pred ecCC----cEEEEEcCCCceeeE
Q 013545 210 GCDG----AIRFWDIRRAGCFRV 228 (441)
Q Consensus 210 s~Dg----~I~iWD~~~~~~~~~ 228 (441)
=-+| .|+++|+..++.+.+
T Consensus 462 fP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 462 FPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred cCcceeeeeEEEEecCCCeEEEe
Confidence 4444 699999998776554
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.53 E-value=3.4e-05 Score=67.23 Aligned_cols=147 Identities=12% Similarity=0.002 Sum_probs=90.3
Q ss_pred CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 013545 56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC 135 (441)
Q Consensus 56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~ 135 (441)
..+|+.|+.-|...+|.+.+... +.. ..+ .|...|.-+.-.-...-.+..++.|+++++.++.-
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~-----h~~------~cd-----~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDG-----HLY------QCD-----VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred ccEEEeccccceeeeecccCccc-----cee------eec-----ccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence 35899999999999999875432 110 000 12111211110000112466788999999998864
Q ss_pred CeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-cee-e-eecCCCCCeEEEEEecCCCcEEEEeec
Q 013545 136 TRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AIS-Q-TLSGHRDGIMTVEWSTSSEWILVTGGC 211 (441)
Q Consensus 136 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~-~-~l~~h~~~v~~v~fsp~~~~~l~s~s~ 211 (441)
+......... -....+.++++. .++++.+....|..|.+... +++ + .+..-.+.-.+.+|+..+. .||.+..
T Consensus 148 ~s~~~~~h~~~~~~ns~~~snd~---~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Q 223 (344)
T KOG4532|consen 148 DSNKFAVHNQNLTQNSLHYSNDP---SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQ 223 (344)
T ss_pred CcccceeeccccceeeeEEcCCC---ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEec
Confidence 4322111111 124556666653 47777777888999998653 333 2 2334445557889998765 6899999
Q ss_pred CCcEEEEEcCC
Q 013545 212 DGAIRFWDIRR 222 (441)
Q Consensus 212 Dg~I~iWD~~~ 222 (441)
||++.|||+|.
T Consensus 224 dg~~~I~DVR~ 234 (344)
T KOG4532|consen 224 DGTCAIYDVRN 234 (344)
T ss_pred CCcEEEEEecc
Confidence 99999999985
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.50 E-value=2.5e-05 Score=68.09 Aligned_cols=227 Identities=7% Similarity=0.037 Sum_probs=132.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCC-CCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLA-ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~ 194 (441)
..+||.||.-+...+|.+.+.+..... +......+.+...- ....-+..++.|.++++.+++.+.....+.-..-.+.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~-cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQ-CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred ccEEEeccccceeeeecccCcccceee-ecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 358999999999999998876643322 22112222221110 0111234456788888888866543322211112378
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS 274 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (441)
++.++|++++ +++.+....|-+|.+......-. .
T Consensus 163 s~~~snd~~~-~~~Vgds~~Vf~y~id~~sey~~----------------------------~----------------- 196 (344)
T KOG4532|consen 163 SLHYSNDPSW-GSSVGDSRRVFRYAIDDESEYIE----------------------------N----------------- 196 (344)
T ss_pred eeEEcCCCce-EEEecCCCcceEEEeCCccceee----------------------------e-----------------
Confidence 9999999985 67888888899998764211000 0
Q ss_pred CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 354 (441)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 354 (441)
.. ...-.+.-.+..|+.....+|++..||++.|||++...-........+.++.+.+
T Consensus 197 ------------~~-----------~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~ 253 (344)
T KOG4532|consen 197 ------------IY-----------EAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAF 253 (344)
T ss_pred ------------eE-----------ecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCce
Confidence 00 0000111235689999999999999999999999875422211111222233333
Q ss_pred E-EEeeCCC---cEEEEeCCCceEEEEccCCceEeee-------cccc-cceEEEEEcCCCCeEEEeecC
Q 013545 355 Q-LATTQDP---AVVFVPCMTAVKAFDIWSGKTCLTF-------RGHY-EYVNCCCFSSQDQELYTGGND 412 (441)
Q Consensus 355 ~-~~~~~~~---~~~~~~~~~~~~~wd~~~~~~~~~l-------~gh~-~~v~~v~fspd~~~l~s~s~D 412 (441)
+ +.+++.+ -++++...+.+.+.|+.+++.+..+ +.|. ..|..-.|+.++..+.+..++
T Consensus 254 R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 254 RVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred EEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 2 3444322 2334445578899999887655432 3333 338888888888777766665
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.49 E-value=1.8e-06 Score=79.05 Aligned_cols=107 Identities=17% Similarity=0.277 Sum_probs=83.1
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee-ecCCCCCeEEEE
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSGHRDGIMTVE 197 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~-l~~h~~~v~~v~ 197 (441)
.-.++++..+.+|.+..+.++..+.+-.-+.+++++++. ..+.++.-|..|++-.....-.+.. +-||+.-|..++
T Consensus 125 ~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~---~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 125 ADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDD---QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred EeecCCceeeeeecccccCcchhhhhhhhhheeeecCCC---CEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence 345677788888887766655555555567888999875 4788889999999987765544444 458999999999
Q ss_pred EecCCCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230 (441)
Q Consensus 198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~ 230 (441)
.-++. .|+|+|.|+++++||+++++++.+++
T Consensus 202 l~~~~--~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 202 LTDNY--LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eccCc--eeeecCCCCcEEEEecccCCcccccc
Confidence 98763 57999999999999999999887664
No 277
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=6.6e-05 Score=71.85 Aligned_cols=192 Identities=19% Similarity=0.291 Sum_probs=114.1
Q ss_pred hhhhhhhhccccceecccceeee-cCCCCceeEEEccCCCC-cEEEE-----eeCCCcEEEEECCCCcccCCCCceeccc
Q 013545 17 SFANRVKSHRLSTLQLSNYKEIV-SPHKGSINSLQVDLTEE-RYLLS-----GASDSSVAVYDVQRATDYEGGGHIAKHR 89 (441)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~-~~H~~~V~~l~~s~~~~-~~l~s-----~s~Dg~i~iwd~~~~~~~~~~~~~~~~~ 89 (441)
+.++++....+.-+++.++..+. .-|...|+.+.+||... .++|+ ++.=..+|||.+.....-. .+ ..+
T Consensus 138 sl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~---~~-a~k 213 (566)
T KOG2315|consen 138 SLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ---PV-ANK 213 (566)
T ss_pred hhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc---hh-hhc
Confidence 45566666566666666554443 34778899999997522 34443 4556679999875211000 00 001
Q ss_pred eeEEeecccccCcccceeEEEEeeCCCCEEE--EEeCC---------CcEEEEECCCCeEEEEEecCCeeEEEeeccCCC
Q 013545 90 SVFVVDKQHEHGHKYAISSAIWYPVDTGLFV--TGSYD---------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAA 158 (441)
Q Consensus 90 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~--sgs~D---------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (441)
.-+.. +.| .+.|.+....+|+ +.--| .++.+.++....+.-.+.-.|+|+++.|++.+.
T Consensus 214 sFFka---------dkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 214 SFFKA---------DKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGR 283 (566)
T ss_pred ccccc---------cee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCC
Confidence 11100 111 2344433222332 22223 467788887556665566678999999998753
Q ss_pred CccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEee--cCCcEEEEEcCCCcee
Q 013545 159 SHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG--CDGAIRFWDIRRAGCF 226 (441)
Q Consensus 159 ~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s--~Dg~I~iWD~~~~~~~ 226 (441)
...++-|-.-..+.+||++ ++++..+. .++-.++-|+|.|..++++|= --|.|-+||+.+.+++
T Consensus 284 -EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 284 -EFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred -EEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 3456667777789999995 45555553 455578999999986554432 2489999998765543
No 278
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.48 E-value=4.3e-06 Score=74.10 Aligned_cols=171 Identities=15% Similarity=0.273 Sum_probs=96.2
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCc--ccCCCCceeccceeEEeeccccc--CcccceeEEEEeeCC-CC
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT--DYEGGGHIAKHRSVFVVDKQHEH--GHKYAISSAIWYPVD-TG 117 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~~~~~~~~-~~ 117 (441)
...|+++.|.- .|.||+||..-|.+.+|...... ++.--...+.+.. +..+.+ .-...|..+.|+.+. ..
T Consensus 26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~----EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL----EFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhccccc----chhhhhhccHHHHhhheeeecCCCcc
Confidence 46799999974 57899999999999999754322 1100000011110 001111 112346667776533 34
Q ss_pred EEEEEeCCCcEEEEECCCCeE--EEE--------EecC----------------------------------CeeEEEee
Q 013545 118 LFVTGSYDHYVKVWDTNCTRV--VMN--------FKMP----------------------------------GKVYRTAM 153 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~--~~~--------~~~~----------------------------------~~~~~~~~ 153 (441)
.|+-.+.|++|++|.+..... +.+ +.+. -++.++.+
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 566677999999998643210 000 0000 01122222
Q ss_pred ccCCCCccEEEEEeCCCcEEEEECCCCc---eeeeecCCC-----CCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545 154 SPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHR-----DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 154 ~~~~~~~~~las~s~d~~I~vwdl~~~~---~~~~l~~h~-----~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~ 222 (441)
..+ ...+.| ..|-.|.+|+++-.. .+..++.|. .-|++..|+|..-.+|+-++.-|.|++-|+|.
T Consensus 181 NsD---~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 181 NSD---KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred cCc---hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 221 123333 356789999986432 233445554 34789999998555666677789999999984
No 279
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.47 E-value=0.00098 Score=60.38 Aligned_cols=218 Identities=17% Similarity=0.208 Sum_probs=128.1
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC
Q 013545 109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG 188 (441)
Q Consensus 109 ~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~ 188 (441)
.+|.+.++.++++--..+.|..||..++... .+..++ ...+.+... +.. |..+.. +.+.++|+++++....+..
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~-~~G~~~~~~--~g~-l~v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG-PNGMAFDRP--DGR-LYVADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS-EEEEEEECT--TSE-EEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC-CceEEEEcc--CCE-EEEEEc-CceEEEecCCCcEEEEeec
Confidence 3455445667777777899999999887653 344454 344444421 233 334443 4566779999865433322
Q ss_pred -----CCCCeEEEEEecCCCcEEEEeecC--------CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545 189 -----HRDGIMTVEWSTSSEWILVTGGCD--------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS 255 (441)
Q Consensus 189 -----h~~~v~~v~fsp~~~~~l~s~s~D--------g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (441)
.......+++.|+|. +.++.... |.|..++.. ++...
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~---------------------------- 128 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTV---------------------------- 128 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEE----------------------------
T ss_pred cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEE----------------------------
Confidence 334567899999987 55554432 223333322 11000
Q ss_pred cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCC
Q 013545 256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVE 334 (441)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~ 334 (441)
........+.|+|+||++.| ++-+..++|..+++.
T Consensus 129 --------------------------------------------~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 129 --------------------------------------------VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp --------------------------------------------EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred --------------------------------------------EecCcccccceEECCcchheeecccccceeEEEecc
Confidence 01122346889999999865 577888999999986
Q ss_pred CCCceeeeeee-EEeccC--cceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEc-CCCCeEE
Q 013545 335 SGRNTLVNFET-VRLQTS--KPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS-SQDQELY 407 (441)
Q Consensus 335 ~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs-pd~~~l~ 407 (441)
........... ..+... .+--+++..++.+.++. ....+.+++.. |+.+..+.--...+++++|. ||.+.|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 165 ADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp TTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred ccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 43321211111 122222 25567888888765543 45788999987 88888777665689999994 6756655
No 280
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.46 E-value=0.00056 Score=64.44 Aligned_cols=254 Identities=12% Similarity=0.073 Sum_probs=134.4
Q ss_pred ccCCCCcEE-EEee---------CCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545 51 VDLTEERYL-LSGA---------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (441)
Q Consensus 51 ~s~~~~~~l-~s~s---------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~ 120 (441)
+||+ ++.| ++.+ .+..|.+||+.+.+.... + . +................+++ ||++++
T Consensus 53 ~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~---i------~-~p~~p~~~~~~~~~~~~ls~-dgk~l~ 120 (352)
T TIGR02658 53 VASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD---I------E-LPEGPRFLVGTYPWMTSLTP-DNKTLL 120 (352)
T ss_pred ECCC-CCEEEEEeccccccccCCCCCEEEEEECccCcEEeE---E------c-cCCCchhhccCccceEEECC-CCCEEE
Confidence 7875 5554 5555 589999999988764210 0 0 00000000000111234454 787777
Q ss_pred EEe-C-CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-Ccee----eeecCCCCCe
Q 013545 121 TGS-Y-DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAIS----QTLSGHRDGI 193 (441)
Q Consensus 121 sgs-~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~----~~l~~h~~~v 193 (441)
..- . +..|-+.|+.+++.+.++..++...-...+. ...+ +-+.|+......+.+ |+.. ..+.+-...+
T Consensus 121 V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e---~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v 195 (352)
T TIGR02658 121 FYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN---DTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYL 195 (352)
T ss_pred EecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC---CccE--EEeecCceEEEEecCCCceEEeeeeeecCCcccc
Confidence 554 3 7999999999999999888765432222221 1112 223355544444322 2211 1111100000
Q ss_pred E-EEEEec-CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 194 M-TVEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 194 ~-~v~fsp-~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
. .-.|.+ +++++++|.. |+|.+-|+....... ... .
T Consensus 196 ~~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~-~~~--------------~------------------------- 233 (352)
T TIGR02658 196 INHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKF-LPA--------------I------------------------- 233 (352)
T ss_pred ccCCceEcCCCcEEEEecC--CeEEEEecCCCccee-cce--------------e-------------------------
Confidence 0 004556 7776665543 999999975432100 000 0
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee----------cCCcEEEeeCCCCCceee
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG----------SDSRIRLWDVESGRNTLV 341 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs----------~D~~i~~wd~~~~~~~~~ 341 (441)
.+.........+ ..+...-++++|+++++.... ..++|.++|..+++...
T Consensus 234 ------~~~~~~~~~~~w-------------rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~- 293 (352)
T TIGR02658 234 ------EAFTEAEKADGW-------------RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR- 293 (352)
T ss_pred ------eecccccccccc-------------CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE-
Confidence 000000000000 112233389999988766532 22579999998876321
Q ss_pred eeeeEEeccCcceEEEeeCCCc-EEEEeCC--CceEEEEccCCceEeee
Q 013545 342 NFETVRLQTSKPIQLATTQDPA-VVFVPCM--TAVKAFDIWSGKTCLTF 387 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~wd~~~~~~~~~l 387 (441)
.+. -...+..+++++|++ .+++.+. +.+.++|..+++.+.++
T Consensus 294 ---~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 294 ---KIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ---EEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 111 134566789999999 7776653 57999999999988876
No 281
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.45 E-value=5.2e-05 Score=68.20 Aligned_cols=224 Identities=14% Similarity=0.112 Sum_probs=125.1
Q ss_pred CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCC
Q 013545 124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE 203 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~ 203 (441)
++++|..||..+++.+....+..........+.. ....+.+++.++.+..||..+|+.+..+.. ...+.......++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~- 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG- 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-
Confidence 3689999999999998888763211111101110 122455667899999999999998876654 2221111222333
Q ss_pred cEEEEeecCCcEEEEEcCCCceeeEe-ccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545 204 WILVTGGCDGAIRFWDIRRAGCFRVL-DQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282 (441)
Q Consensus 204 ~~l~s~s~Dg~I~iWD~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (441)
.+ +.++.|+.|..+|.++++..-.. ......
T Consensus 78 ~v-~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~----------------------------------------------- 109 (238)
T PF13360_consen 78 RV-YVGTSDGSLYALDAKTGKVLWSIYLTSSPP----------------------------------------------- 109 (238)
T ss_dssp EE-EEEETTSEEEEEETTTSCEEEEEEE-SSCT-----------------------------------------------
T ss_pred cc-ccccceeeeEecccCCcceeeeeccccccc-----------------------------------------------
Confidence 33 45567889999998887643221 100000
Q ss_pred CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc-Cc-------ce
Q 013545 283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT-SK-------PI 354 (441)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~-~~-------~~ 354 (441)
..........+ ++..++.+..++.|..+|+.+++.... +.. .... .. ..
T Consensus 110 -------------------~~~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~-~~~-~~~~~~~~~~~~~~~~ 166 (238)
T PF13360_consen 110 -------------------AGVRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWK-YPV-GEPRGSSPISSFSDIN 166 (238)
T ss_dssp -------------------CSTB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEE-EES-STT-SS--EEEETTEE
T ss_pred -------------------cccccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEE-eec-CCCCCCcceeeecccc
Confidence 00000111222 277788888899999999999874321 111 0000 00 01
Q ss_pred EEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 355 QLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 355 ~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
......++ .++.... ..+-.+|+.+++.+-... ...+.. .+.+++..|+.++.|+.+..||+.+++.
T Consensus 167 ~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 167 GSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred cceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 12222334 4444443 433444999988654322 222222 1456778888888999999999998863
No 282
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=1.1e-06 Score=78.98 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=104.3
Q ss_pred EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC-
Q 013545 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT- 136 (441)
Q Consensus 58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~- 136 (441)
+-++.+.+..|-|=|++++.. +.+ +.+..|.+..|.. .++++..|...|.|...|++.+
T Consensus 226 yhfs~G~sqqv~L~nvetg~~------------------qsf-~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGHQ------------------QSF-QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred eeecccccceeEEEEeecccc------------------ccc-ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecc
Confidence 346666777777777765531 111 2445666666654 4679999999999999999754
Q ss_pred ----eEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce---eeeecCCCCCeEEEEEe--cCCCcEEE
Q 013545 137 ----RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI---SQTLSGHRDGIMTVEWS--TSSEWILV 207 (441)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~---~~~l~~h~~~v~~v~fs--p~~~~~l~ 207 (441)
.+.+.+.++..+.++..-.+ +...|.+.+.+|+|++||+.--++ ++++.||...-.-+-++ +. +.+++
T Consensus 286 qG~~~~a~rlyh~Ssvtslq~Lq~--s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~e-eg~I~ 362 (425)
T KOG2695|consen 286 QGNGWCAQRLYHDSSVTSLQILQF--SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEE-EGSIF 362 (425)
T ss_pred cCCCcceEEEEcCcchhhhhhhcc--ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccc-cceEE
Confidence 35566666766665554432 345677778999999999976655 88899997665544443 33 34678
Q ss_pred EeecCCcEEEEEcCCCceeeEe
Q 013545 208 TGGCDGAIRFWDIRRAGCFRVL 229 (441)
Q Consensus 208 s~s~Dg~I~iWD~~~~~~~~~~ 229 (441)
+++.|-.-|||.++.+-.+.++
T Consensus 363 s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred EccCeeEEEEEecccCceeecc
Confidence 8999999999999987665554
No 283
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=3.4e-07 Score=91.27 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=101.7
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
++..|+..-+|++|+. +.++|+.|+-.|.|+++++.+|.... +...|..+|+-+.-+. ||.
T Consensus 1096 ~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~-----------------s~ncH~SavT~vePs~-dgs 1156 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEE-----------------SVNCHQSAVTLVEPSV-DGS 1156 (1516)
T ss_pred hhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccc-----------------cccccccccccccccC-Ccc
Confidence 3557888999999984 57799999999999999999876431 2236777887666554 565
Q ss_pred EEEE-EeCCC-cEEEEECCC-CeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee-ecC---CC
Q 013545 118 LFVT-GSYDH-YVKVWDTNC-TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSG---HR 190 (441)
Q Consensus 118 ~l~s-gs~D~-~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~-l~~---h~ 190 (441)
.+++ +++.. -..+|+... +.+.+.|... .++.|+... ..-+.|+......+||++|+..+.+ +.+ ..
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed---~~vkFsn~~---q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFDED---KAVKFSNSL---QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred eeeeeccccCchHHHhccccccCcccccccc---ceeehhhhH---HHHHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence 5544 44443 578999753 3444444322 223344321 1223344456799999999987665 322 22
Q ss_pred CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc
Q 013545 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224 (441)
Q Consensus 191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~ 224 (441)
..-.++.|+|..+.+| .|| -+||+|...
T Consensus 1231 y~~n~a~FsP~D~LIl----ndG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLIL----NDG--VLWDVRIPE 1258 (1516)
T ss_pred hhccccccCCCcceEe----eCc--eeeeeccHH
Confidence 2236889999987443 466 789998653
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=0.00021 Score=69.88 Aligned_cols=197 Identities=12% Similarity=0.037 Sum_probs=112.0
Q ss_pred CeeEEEeeccCCCCccEEE-EEeC--CCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCc--EEEEEc
Q 013545 146 GKVYRTAMSPLAASHMLIA-AGTE--DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA--IRFWDI 220 (441)
Q Consensus 146 ~~~~~~~~~~~~~~~~~la-s~s~--d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~--I~iWD~ 220 (441)
+......++|++. .+++ +... +..|.++|+.+++..... ...+......|+||++.++++.+.++. |.++|+
T Consensus 188 ~~~~~p~wSpDG~--~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 188 GLNIFPKWANKEQ--TAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CCeEeEEECCCCC--cEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 4455667787653 2233 2222 457999999998764433 345556778899999887777665544 555565
Q ss_pred CCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccc
Q 013545 221 RRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRA 300 (441)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (441)
..+...+ +
T Consensus 265 ~~g~~~~-L----------------------------------------------------------------------- 272 (419)
T PRK04043 265 NTKTLTQ-I----------------------------------------------------------------------- 272 (419)
T ss_pred CCCcEEE-c-----------------------------------------------------------------------
Confidence 4332110 0
Q ss_pred eeeccCeEEEEEccCCCEEEEeec-CC--cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-------
Q 013545 301 TAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM------- 370 (441)
Q Consensus 301 ~~h~~~v~~l~~s~dg~~l~sgs~-D~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 370 (441)
..+.+......|+|||+.|+-.+. .+ .|.+.|+.+++.....+ . +. ....++||+..++....
T Consensus 273 T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-----~-g~-~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 273 TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-----H-GK-NNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-----C-CC-cCceECCCCCEEEEEEcCCCcccC
Confidence 000011122369999987665442 23 57788888765322111 1 11 12378899987765432
Q ss_pred ---CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec-CCc--EEEeCCCCCCCC
Q 013545 371 ---TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN-DRQ--ILVWCPSRHISD 426 (441)
Q Consensus 371 ---~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~-D~~--i~vW~~~~~~~~ 426 (441)
..+.+.|+.++.. ..|... .......|||||+.|+-.+. .+. +.+.+++....-
T Consensus 346 ~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~ 405 (419)
T PRK04043 346 KNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSF 405 (419)
T ss_pred CCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeE
Confidence 2456667777754 334332 23346889999998774433 333 555566655433
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.39 E-value=1.6e-06 Score=74.98 Aligned_cols=213 Identities=13% Similarity=0.137 Sum_probs=119.1
Q ss_pred CCCC-ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 41 PHKG-SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 41 ~H~~-~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
+|.+ .|..+.|+ ....|+++..++.+......++.....-+......+..... -|+..-.+-.++- -+..+
T Consensus 33 ~~~d~~~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a-----~~sep~p~~~~s~-~~t~V 104 (319)
T KOG4714|consen 33 QHADVKLSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLA-----KNSEIDPNDACTM-TDNRV 104 (319)
T ss_pred cccceEEEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeee-----ccCCCCCcccccc-cCCce
Confidence 4443 46777776 24568899999988887765544311000000111111111 1222221112222 24578
Q ss_pred EEEeCCCcEEEEECCCCeEE-EEEec--CCeeEEEeeccCCCCccEEEEEe-----CCCcEEEEECCCCceeeeecCCCC
Q 013545 120 VTGSYDHYVKVWDTNCTRVV-MNFKM--PGKVYRTAMSPLAASHMLIAAGT-----EDVQVRLCDIASGAISQTLSGHRD 191 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~las~s-----~d~~I~vwdl~~~~~~~~l~~h~~ 191 (441)
+++..|+.+-+.+.+.-..+ .++.. .+......++. ...+.++. .-+..+.|+++..+....-..-..
T Consensus 105 ~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~----~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~ 180 (319)
T KOG4714|consen 105 CIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRH----GNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD 180 (319)
T ss_pred EecCCCceEEEEechHHHhhhhhcccccccccccceeec----ccEEecCCcceEeeccceeeecccccccccccccccc
Confidence 99999999999987641111 11110 00000011111 11222221 112355666544332222222234
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
.|.++.-+|..+.++++|+.||.+-+||.|.....
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p--------------------------------------------- 215 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP--------------------------------------------- 215 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccch---------------------------------------------
Confidence 48999999998888999999999999999853100
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEeecCCcEEEeeCCC
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~ 335 (441)
...+++|..++..|-|+|. +..|.+++.||.+.-||.++
T Consensus 216 -------------------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 216 -------------------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -------------------------HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 0013578889999999986 56899999999999999875
No 286
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=0.0027 Score=58.11 Aligned_cols=279 Identities=15% Similarity=0.242 Sum_probs=159.9
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCC---CcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASD---SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+.+..+-|+|+| +.++|.++-.+ |.|..|.+.... +.+.. +.++...|+. -+-+++.+ ++.
T Consensus 37 ~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~-----G~Lt~------ln~~~~~g~~--p~yvsvd~-~g~ 101 (346)
T COG2706 37 AELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDD-----GRLTF------LNRQTLPGSP--PCYVSVDE-DGR 101 (346)
T ss_pred cccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCC-----CeEEE------eeccccCCCC--CeEEEECC-CCC
Confidence 4567889999996 56778777665 667777765321 11111 1112222222 13345554 788
Q ss_pred EEEEEeC-CCcEEEEECCC-CeE---EEEEecCCe----------eEEEeeccCCCCccEEEEEe-CCCcEEEEECCCCc
Q 013545 118 LFVTGSY-DHYVKVWDTNC-TRV---VMNFKMPGK----------VYRTAMSPLAASHMLIAAGT-EDVQVRLCDIASGA 181 (441)
Q Consensus 118 ~l~sgs~-D~~i~iWd~~~-~~~---~~~~~~~~~----------~~~~~~~~~~~~~~~las~s-~d~~I~vwdl~~~~ 181 (441)
+++++.+ -+.|.++-+.. |.+ +....+.+. +....+.|+. .+|++.. .--.|.+|+++.|+
T Consensus 102 ~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~---~~l~v~DLG~Dri~~y~~~dg~ 178 (346)
T COG2706 102 FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG---RYLVVPDLGTDRIFLYDLDDGK 178 (346)
T ss_pred EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC---CEEEEeecCCceEEEEEcccCc
Confidence 8888876 58899998854 443 233344333 4455555543 3454443 34479999999887
Q ss_pred eeeeec---CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC-ceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 182 ISQTLS---GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 182 ~~~~l~---~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
+...-. .-....+-+.|+|+++...+.+=-+++|-+|..... ..++.+.... ..
T Consensus 179 L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~----------------------tl 236 (346)
T COG2706 179 LTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID----------------------TL 236 (346)
T ss_pred cccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec----------------------cC
Confidence 543211 234456889999999965555667899999998753 2222221000 00
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEeeCCCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESG 336 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~wd~~~~ 336 (441)
+ . . +.+ .....+|.++|||++|.+.. ....|-++-+...
T Consensus 237 P---~---------------------d---------------F~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 237 P---E---------------------D---------------FTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred c---c---------------------c---------------cCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 0 0 0 000 12356788999999987652 2346777766643
Q ss_pred CceeeeeeeEEeccC-cceEEEeeCCCcEEEEeCC--CceEEEEc--cCCceEeeec-ccccceEEEEEc
Q 013545 337 RNTLVNFETVRLQTS-KPIQLATTQDPAVVFVPCM--TAVKAFDI--WSGKTCLTFR-GHYEYVNCCCFS 400 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~wd~--~~~~~~~~l~-gh~~~v~~v~fs 400 (441)
...+. +.......+ .|..+.+.+++.+++++.. ..+.+|.+ .+|++-.... .+-....||.|.
T Consensus 277 ~g~L~-~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLE-LVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEE-EEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 22222 222222223 3777889999999988865 46777776 4455433322 333446777764
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=0.00027 Score=69.07 Aligned_cols=109 Identities=10% Similarity=0.077 Sum_probs=67.7
Q ss_pred eeEEEEeeCCCCE-EEEEeC---CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC--CCcEEEEECCC
Q 013545 106 ISSAIWYPVDTGL-FVTGSY---DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE--DVQVRLCDIAS 179 (441)
Q Consensus 106 V~~~~~~~~~~~~-l~sgs~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~--d~~I~vwdl~~ 179 (441)
.....|+| |++. ++..+. +..|.++|+.+++........+......++|++. .++.+.+. +..|.++|+.+
T Consensus 190 ~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 190 NIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS--KLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred eEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC--EEEEEEccCCCcEEEEEECCC
Confidence 34556776 6763 554444 3568888998887655444555555667888653 34433333 45788889988
Q ss_pred CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEE
Q 013545 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW 218 (441)
Q Consensus 180 ~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iW 218 (441)
++. ..+..+........|+|||+.++++....+.-.||
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy 304 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIF 304 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEE
Confidence 874 34444444344568999999877766555544444
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=2.5e-06 Score=76.64 Aligned_cols=100 Identities=17% Similarity=0.300 Sum_probs=69.8
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-----ceeeeecCCCCCeE
Q 013545 120 VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-----AISQTLSGHRDGIM 194 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-----~~~~~l~~h~~~v~ 194 (441)
++.|.+..|-+-|++++-. ..|...+.|.+..|.. ..+++..|.-+|.|...||..+ .+.+.+ -|.+.|+
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~---s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAG---SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecccc-cccccchhHHHHHhcc---cCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchh
Confidence 6667778888888876642 2222334455555544 3458888999999999999875 233333 3888899
Q ss_pred EEEEec-CCCcEEEEeecCCcEEEEEcCCCce
Q 013545 195 TVEWST-SSEWILVTGGCDGAIRFWDIRRAGC 225 (441)
Q Consensus 195 ~v~fsp-~~~~~l~s~s~Dg~I~iWD~~~~~~ 225 (441)
++..-. ++++ |++.+.+|+|++||.|.-+|
T Consensus 303 slq~Lq~s~q~-LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 303 SLQILQFSQQK-LMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred hhhhhccccce-EeeccCcCceeEeeehhhhc
Confidence 887665 4554 67789999999999986554
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.28 E-value=3e-06 Score=73.34 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=64.8
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
..|++++-+|....++++|+.||.+-+||......+ -.....|+.+++-+-|+|.+++.|++++
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p----------------~S~l~ahk~~i~eV~FHpk~p~~Lft~s 243 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP----------------VSLLKAHKAEIWEVHFHPKNPEHLFTCS 243 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccch----------------HHHHHHhhhhhhheeccCCCchheeEec
Confidence 459999999988888999999999999998754321 1234589999999999999999999999
Q ss_pred CCCcEEEEECCC
Q 013545 124 YDHYVKVWDTNC 135 (441)
Q Consensus 124 ~D~~i~iWd~~~ 135 (441)
.||.+.-||..+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999874
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.26 E-value=4.4e-06 Score=82.06 Aligned_cols=198 Identities=21% Similarity=0.311 Sum_probs=128.1
Q ss_pred eeEEEEeeCCCCEEEEEeCCCcEEEEECCCC-eE---EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc
Q 013545 106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT-RV---VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA 181 (441)
Q Consensus 106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~ 181 (441)
+..+...|. |.-+|.++.-|. .+-|+... .+ +..+. +-.+..+.+++.......++ ......-.+|++.-..
T Consensus 27 ~~a~si~p~-grdi~lAsr~gl-~i~dld~p~~ppr~l~h~t-pw~vad~qws~h~a~~~wiV-sts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 27 FNAVSINPS-GRDIVLASRQGL-YIIDLDDPFTPPRWLHHIT-PWQVADVQWSPHPAKPYWIV-STSNQKAIIWNLAKSS 102 (1081)
T ss_pred ccceeeccc-cchhhhhhhcCe-EEEeccCCCCCceeeeccC-cchhcceecccCCCCceeEE-ecCcchhhhhhhhcCC
Confidence 444555553 444566666543 34455432 11 22111 22355566777655444444 4456677899986432
Q ss_pred ---eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCce-eeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 182 ---ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 182 ---~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
.-..+.||...|+.+.|+|..+.++++++.|-.+..||+++... +..+.
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~--------------------------- 155 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS--------------------------- 155 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee---------------------------
Confidence 33467899999999999999988999999999999999986420 00000
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
.....-..|+|+.....+.+.+..+.|++||.+.+.
T Consensus 156 --------------------------------------------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs 191 (1081)
T KOG0309|consen 156 --------------------------------------------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS 191 (1081)
T ss_pred --------------------------------------------cccccCceeeecccCcchhhhccCCceEEEeccCCC
Confidence 000123456777666666667777789999887653
Q ss_pred ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCC-CCeEEEeecCCcEE
Q 013545 338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ-DQELYTGGNDRQIL 416 (441)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd-~~~l~s~s~D~~i~ 416 (441)
..+..+++|...|+.++|+-- ...+.+.+.|++|+
T Consensus 192 --------------------------------------------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 192 --------------------------------------------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred --------------------------------------------cceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 223455678888888888753 35588999999999
Q ss_pred EeCCCC
Q 013545 417 VWCPSR 422 (441)
Q Consensus 417 vW~~~~ 422 (441)
.|+-+.
T Consensus 228 fw~y~k 233 (1081)
T KOG0309|consen 228 FWDYSK 233 (1081)
T ss_pred eecccc
Confidence 998763
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.23 E-value=0.007 Score=64.91 Aligned_cols=320 Identities=15% Similarity=0.155 Sum_probs=168.9
Q ss_pred CCCceeEEEccCCCCcEEEEeeC---C---CcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 42 HKGSINSLQVDLTEERYLLSGAS---D---SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~---D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
+...-..|+|- .||.|+|..+- + ..||||+.+ |.. ... .+.- .|- -.+++|.| .
T Consensus 208 ~dd~~~~ISWR-GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L-------~st-----SE~v--~gL---e~~l~WrP-s 267 (928)
T PF04762_consen 208 WDDGRVRISWR-GDGEYFAVSSVEPETGSRRVIRVYSRE-GEL-------QST-----SEPV--DGL---EGALSWRP-S 267 (928)
T ss_pred cCCCceEEEEC-CCCcEEEEEEEEcCCCceeEEEEECCC-ceE-------Eec-----cccC--CCc---cCCccCCC-C
Confidence 56677889995 67899888775 3 468999875 211 000 0000 000 11356766 6
Q ss_pred CCEEEEEeC---CCcEEEEECCCCeEEEEEecC-----CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--eeee
Q 013545 116 TGLFVTGSY---DHYVKVWDTNCTRVVMNFKMP-----GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQT 185 (441)
Q Consensus 116 ~~~l~sgs~---D~~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~~~~ 185 (441)
|.++|+.-. ...|.+|.= +|..-..|.+. ..+..+.|++++ .+||....|. |++|-..+-. +.+.
T Consensus 268 G~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds---~iLAv~~~~~-vqLWt~~NYHWYLKqe 342 (928)
T PF04762_consen 268 GNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDS---EILAVWLEDR-VQLWTRSNYHWYLKQE 342 (928)
T ss_pred CCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCC---CEEEEEecCC-ceEEEeeCCEEEEEEE
Confidence 888888765 455666753 34444444442 356777777754 4777766554 9999987654 2233
Q ss_pred ec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545 186 LS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR 264 (441)
Q Consensus 186 l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (441)
+. .....+..+.|+|.....|.....+|.+..++..-.-+. .... + ........
T Consensus 343 i~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~----s~~~-----~----------------~~D~g~va 397 (928)
T PF04762_consen 343 IRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR----SPGS-----S----------------PNDNGTVA 397 (928)
T ss_pred EEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe----cCCC-----C----------------ccCceEEE
Confidence 33 223345569999987776777777788887765311000 0000 0 00000111
Q ss_pred cCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce-----
Q 013545 265 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT----- 339 (441)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~----- 339 (441)
..+|..+...|..... +.|.+... ...-..+|.+++|++++..+++-..|++|.+|........
T Consensus 398 VIDG~~lllTpf~~a~--------VPPPMs~~---~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~ 466 (928)
T PF04762_consen 398 VIDGNKLLLTPFRRAV--------VPPPMSSY---ELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPP 466 (928)
T ss_pred EEeCCeEEEecccccC--------CCchHhce---EEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCc
Confidence 2233333322222111 11111111 0122467999999999988999999999999985543211
Q ss_pred -e-eeee-------eEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCc---eEeeecccccceEEEEEcCCC
Q 013545 340 -L-VNFE-------TVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGK---TCLTFRGHYEYVNCCCFSSQD 403 (441)
Q Consensus 340 -~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~---~~~~l~gh~~~v~~v~fspd~ 403 (441)
. ..+. ...........+++..+...+++... ..+.++++...+ .......-.+.+..+...++.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (928)
T PF04762_consen 467 KLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDS 546 (928)
T ss_pred chhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCC
Confidence 0 0000 00111223345566666555444333 356666663322 222222234556666666665
Q ss_pred CeEEEeecCCcEEEeCCCC
Q 013545 404 QELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 404 ~~l~s~s~D~~i~vW~~~~ 422 (441)
..++--..||.+..-+...
T Consensus 547 ~~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 547 GSLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred cEEEEEECCCEEEEeecCC
Confidence 5455556688876444433
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.16 E-value=0.0035 Score=55.73 Aligned_cols=37 Identities=8% Similarity=-0.046 Sum_probs=32.3
Q ss_pred cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 390 HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 390 h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
-...|..|.+||||+.||+..-+|.|.+|.+++=++.
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 3567999999999999999999999999999865543
No 293
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=0.0003 Score=69.39 Aligned_cols=171 Identities=18% Similarity=0.225 Sum_probs=107.6
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccC-CCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE-GGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
.|......|+.|+- +..||+.|+.||.+++-.+.+.+.-. ..+ +... .-...+|+..||+..|.-+.|.. ..+.
T Consensus 11 iPnnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~--snLsmNQtLeGH~~sV~vvTWNe-~~QK 85 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSG-LAAA--SNLSMNQTLEGHNASVMVVTWNE-NNQK 85 (1189)
T ss_pred CCCCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccc-cccc--cccchhhhhccCcceEEEEEecc-cccc
Confidence 35567899999984 66799999999999999887654311 111 1111 11223578889999999888876 4567
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEE-e--cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee-eeecCCCCCeE
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNF-K--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-QTLSGHRDGIM 194 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~-~~l~~h~~~v~ 194 (441)
|-|...+|.|.+|=+-.++-.... + -.+-+.+.++..++ ..++..-.||.|.+=.++....- +.++|.. ..
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG---~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~--l~ 160 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG---TKICIVYEDGAVIVGSVDGNRIWGKELKGQL--LA 160 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC---cEEEEEEccCCEEEEeeccceecchhcchhe--cc
Confidence 888888999999976444321110 0 01224455555443 24555566777766655433221 2344322 23
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
.+.|++|.+.+ .-+-..|.+.+||..
T Consensus 161 hv~ws~D~~~~-Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 161 HVLWSEDLEQA-LFKKANGETHLYDNQ 186 (1189)
T ss_pred ceeecccHHHH-HhhhcCCcEEEeccc
Confidence 67899998754 456678999999965
No 294
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.15 E-value=0.0019 Score=61.48 Aligned_cols=278 Identities=14% Similarity=0.156 Sum_probs=153.1
Q ss_pred CceeEEEccCCCCcEEEEeeCCCc---------------EEEEECCCCcccCCCCceecc--------------------
Q 013545 44 GSINSLQVDLTEERYLLSGASDSS---------------VAVYDVQRATDYEGGGHIAKH-------------------- 88 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~---------------i~iwd~~~~~~~~~~~~~~~~-------------------- 88 (441)
.-|.-+.|+| +++||+|=+.-.. +.+||+.++.-...-..+...
T Consensus 72 ~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 72 PDVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred CCceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 5688999996 6899999876655 889998876521100000000
Q ss_pred -ceeEEee-cccccCcc------cceeEEEEeeC-CCCEEE-----EEeCCCcEEEEECCCCeEEEEEecC-CeeEEEee
Q 013545 89 -RSVFVVD-KQHEHGHK------YAISSAIWYPV-DTGLFV-----TGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAM 153 (441)
Q Consensus 89 -~~~~~~~-~~~~~~h~------~~V~~~~~~~~-~~~~l~-----sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~ 153 (441)
..+++.+ ......|. .+|..-.++|. +++.|| ..+.++++++|.+-.+.++.+..+- -.-..+.+
T Consensus 151 ~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW 230 (561)
T COG5354 151 GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW 230 (561)
T ss_pred cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE
Confidence 0011111 00001111 34445556654 333333 2456788999988766665543321 00112222
Q ss_pred ccCCCCccEEEEE----------eCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcE-EEEeecCCcEEEEEcCC
Q 013545 154 SPLAASHMLIAAG----------TEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWI-LVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 154 ~~~~~~~~~las~----------s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~-l~s~s~Dg~I~iWD~~~ 222 (441)
.+.+. .+|+-. -....+.++++.. ..+....+-.++|...+|.|.++.+ +++|-.+-++.++|++.
T Consensus 231 ~~~g~--~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 231 QVLGK--YLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred ecCCc--eEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 32221 111110 0124577888863 3333333668999999999998753 33445788999999875
Q ss_pred CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccccccccee
Q 013545 223 AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATA 302 (441)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (441)
.-.+...
T Consensus 308 Nl~~~~P------------------------------------------------------------------------- 314 (561)
T COG5354 308 NLRFYFP------------------------------------------------------------------------- 314 (561)
T ss_pred ceEEecC-------------------------------------------------------------------------
Confidence 3111100
Q ss_pred eccCeEEEEEccCCCEEEEeecC---CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-------Cc
Q 013545 303 HYGAVTGLKVTEDGMYLLSAGSD---SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-------TA 372 (441)
Q Consensus 303 h~~~v~~l~~s~dg~~l~sgs~D---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 372 (441)
..+-+.+.|+|.+++++.++-| |.+.+||........ . .+.......+.++||+..+.+... ..
T Consensus 315 -e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~---~--~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~ 388 (561)
T COG5354 315 -EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVA---G--AFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNS 388 (561)
T ss_pred -CcccccccccCcccEEEEecCCccccceEEeccCCceEEE---E--EeecCCceEeeccCCceEEEecCCCcccccCcc
Confidence 1122345688888888887766 468888876532111 1 122223334567888887776543 26
Q ss_pred eEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC
Q 013545 373 VKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412 (441)
Q Consensus 373 ~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D 412 (441)
+++||+...... ..+.+.|-|.+++..|-|.+
T Consensus 389 i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 389 IKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred eEEEEecCchhh--------hhhhccccCCcccceeeccC
Confidence 899998543321 35667777777776655554
No 295
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=3.3e-05 Score=71.96 Aligned_cols=225 Identities=17% Similarity=0.119 Sum_probs=136.3
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe----cCCeeEEEeeccCCCCccEEEEEeC-CCcEEEE
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK----MPGKVYRTAMSPLAASHMLIAAGTE-DVQVRLC 175 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~las~s~-d~~I~vw 175 (441)
=|...|+-+... -.+++.+++.|+.+|.|--..-.-+.-.+ +.+.+..++.+- ...++.+... |..++++
T Consensus 7 mhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~---dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY---DGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc---cceeEeeccCcccceeEE
Confidence 366667666554 46799999999999999753211111111 112222333332 3456777666 9999999
Q ss_pred ECCCCceeee--ecCCCCCeEEEEEecCCC--cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545 176 DIASGAISQT--LSGHRDGIMTVEWSTSSE--WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG 251 (441)
Q Consensus 176 dl~~~~~~~~--l~~h~~~v~~v~fsp~~~--~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (441)
|+++-..+.- +.--++.+.++ .+|... .+.++.-.++.|.++|-+...|...
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~----------------------- 137 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG----------------------- 137 (558)
T ss_pred EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccc-----------------------
Confidence 9987654321 11122222222 233322 2334444578888888653221000
Q ss_pred ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe
Q 013545 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331 (441)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w 331 (441)
-...-|..+|..+.+.+-+..++|....|.|..|
T Consensus 138 ----------------------------------------------~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyW 171 (558)
T KOG0882|consen 138 ----------------------------------------------YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYW 171 (558)
T ss_pred ----------------------------------------------eecccccCceEEEEeeccccceeeccccceeEee
Confidence 0012478899999999999999999999999999
Q ss_pred eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec
Q 013545 332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 411 (441)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~ 411 (441)
..... +. +.... .-|.+....-+..+.--+....++.|+|+|..+.+-+.
T Consensus 172 s~e~~---~q-fPr~~--------------------------l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~ 221 (558)
T KOG0882|consen 172 SAEGP---FQ-FPRTN--------------------------LNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP 221 (558)
T ss_pred cCCCc---cc-Ccccc--------------------------ccccccccchhhcccccccCccceEEccccCcccccCc
Confidence 87631 00 00000 01122222222333445566899999999999999999
Q ss_pred CCcEEEeCCCCCCCCCccC
Q 013545 412 DRQILVWCPSRHISDGVDA 430 (441)
Q Consensus 412 D~~i~vW~~~~~~~~~~~~ 430 (441)
|..||++...++++-+...
T Consensus 222 DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 222 DRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccEEEEEEeccchhhhhhh
Confidence 9999999999998765543
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.07 E-value=0.0077 Score=53.99 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=70.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee-cCCC---
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHR--- 190 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l-~~h~--- 190 (441)
+++++++++.++.|..||..+|+.+..+..++.+...... . ...+..++.++.+..+|+++|+.+... ....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---D-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---E-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---c-ccccccccceeeeEecccCCcceeeeecccccccc
Confidence 4567888899999999999999998888775543222111 1 124555567889999999999988773 3221
Q ss_pred --CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCcee
Q 013545 191 --DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF 226 (441)
Q Consensus 191 --~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~ 226 (441)
.......+. ++. ++.+..++.|..+|+++++.+
T Consensus 111 ~~~~~~~~~~~--~~~-~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 111 GVRSSSSPAVD--GDR-LYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp STB--SEEEEE--TTE-EEEEETCSEEEEEETTTTEEE
T ss_pred ccccccCceEe--cCE-EEEEeccCcEEEEecCCCcEE
Confidence 111223333 443 566777999999999988654
No 297
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.01 E-value=0.0064 Score=65.21 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=74.6
Q ss_pred cCeEEEEEccCCCEEEEeec---C---CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceE
Q 013545 305 GAVTGLKVTEDGMYLLSAGS---D---SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVK 374 (441)
Q Consensus 305 ~~v~~l~~s~dg~~l~sgs~---D---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 374 (441)
+.-..|+|-.||.|+|..+- . +.+|+|+-+ |. +. .+-....+....+++.|.|.++++... ..|-
T Consensus 210 d~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~--L~--stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 210 DGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE--LQ--STSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVV 284 (928)
T ss_pred CCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce--EE--eccccCCCccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence 34567999999999998775 2 579999865 32 11 111112233446789999998887644 1232
Q ss_pred EEEccCCceEeeec----ccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 375 AFDIWSGKTCLTFR----GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 375 ~wd~~~~~~~~~l~----gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
.|. .+|-....|. .....|..++|++|+..||..-.|. |++|.....+
T Consensus 285 FfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 285 FFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred EEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 332 3444444332 3456799999999999999866555 9999987665
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.01 E-value=0.0071 Score=53.81 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=59.9
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec----CC----eeEEEeeccCCCCc---cEEEEEeCCCcEEEEE
Q 013545 108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM----PG----KVYRTAMSPLAASH---MLIAAGTEDVQVRLCD 176 (441)
Q Consensus 108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~---~~las~s~d~~I~vwd 176 (441)
-++|+| |+.+||.+...|+|+++|+.... +..++. .+ .+..+.|.....+. ..|.+-..+|.++-|-
T Consensus 48 kl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 48 KLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred EEEECC-CCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 467775 88899999999999999986433 333321 11 12222222211111 1233445567776665
Q ss_pred CCCC---c--eeee--ec-CCCCCeEEEEEecCCCcEEEEeecCC
Q 013545 177 IASG---A--ISQT--LS-GHRDGIMTVEWSTSSEWILVTGGCDG 213 (441)
Q Consensus 177 l~~~---~--~~~~--l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg 213 (441)
+..+ . ...+ +. .+...|.++.|+|..+.+++.|....
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~ 170 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN 170 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC
Confidence 4322 1 2222 22 35789999999999876666555443
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.00 E-value=0.0059 Score=59.53 Aligned_cols=260 Identities=12% Similarity=0.094 Sum_probs=137.3
Q ss_pred EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe
Q 013545 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR 137 (441)
Q Consensus 58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~ 137 (441)
.++.++.+|.+..+|.++++.. .... ..+ .+.+.... .+++++.+..++.+.-+|.++|+
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~------W~~~---------~~~---~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~ 181 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVA------WQTK---------VAG---EALSRPVV--SDGLVLVHTSNGMLQALNESDGA 181 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCc------cccc---------CCC---ceecCCEE--ECCEEEEECCCCEEEEEEccCCC
Confidence 5666778899999998877531 1000 000 11111011 13467777889999999999999
Q ss_pred EEEEEecCCeeEEE--eeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC-------CeEEEEEec--CCCcEE
Q 013545 138 VVMNFKMPGKVYRT--AMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD-------GIMTVEWST--SSEWIL 206 (441)
Q Consensus 138 ~~~~~~~~~~~~~~--~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~-------~v~~v~fsp--~~~~~l 206 (441)
.+-.++........ ..+|.-... .+..++.++.+..+|.++|+.+...+-... ....+..+| .+.. +
T Consensus 182 ~~W~~~~~~~~~~~~~~~sP~v~~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~-v 259 (394)
T PRK11138 182 VKWTVNLDVPSLTLRGESAPATAFG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV-V 259 (394)
T ss_pred EeeeecCCCCcccccCCCCCEEECC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCE-E
Confidence 88776654221110 112211112 355567789999999999987655431100 000011111 1233 3
Q ss_pred EEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcc
Q 013545 207 VTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVR 286 (441)
Q Consensus 207 ~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (441)
+.++.+|.+...|+.+++..=..+
T Consensus 260 y~~~~~g~l~ald~~tG~~~W~~~-------------------------------------------------------- 283 (394)
T PRK11138 260 YALAYNGNLVALDLRSGQIVWKRE-------------------------------------------------------- 283 (394)
T ss_pred EEEEcCCeEEEEECCCCCEEEeec--------------------------------------------------------
Confidence 456678888888887653210000
Q ss_pred cccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEE
Q 013545 287 QRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVF 366 (441)
Q Consensus 287 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (441)
.+....+. .++..|..++.|+.+..+|..+++.... ... .. ..........++.+++
T Consensus 284 -----------------~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~-~~~--~~-~~~~~sp~v~~g~l~v 340 (394)
T PRK11138 284 -----------------YGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWS-QSD--LL-HRLLTAPVLYNGYLVV 340 (394)
T ss_pred -----------------CCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEc-ccc--cC-CCcccCCEEECCEEEE
Confidence 00000111 1344566677788888888887753221 110 00 0000101112344433
Q ss_pred EeCCCceEEEEccCCceEeeecccccceEE-EEEcCCCCeEEEeecCCcEEEeCC
Q 013545 367 VPCMTAVKAFDIWSGKTCLTFRGHYEYVNC-CCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 367 ~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~-v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
....+.+..+|..+|+.+....-+...+.. ..+ .+..|+.++.||.+..++.
T Consensus 341 ~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 341 GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 334467888999999987766543333322 222 2457777889999887764
No 300
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.96 E-value=0.0099 Score=57.96 Aligned_cols=148 Identities=12% Similarity=0.107 Sum_probs=85.3
Q ss_pred cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeeccc-cc-Cc-ccceeE-EEEeeCCCCEEEEEeCCCcEEEEE
Q 013545 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQH-EH-GH-KYAISS-AIWYPVDTGLFVTGSYDHYVKVWD 132 (441)
Q Consensus 57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~h-~~~V~~-~~~~~~~~~~l~sgs~D~~i~iWd 132 (441)
..+..++.+|.+.-+|.++++.. .... ..... .. .. ...+.+ ... +++.++.++.++.+..+|
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~------W~~~----~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald 136 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEI------WSVD----LSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALN 136 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEe------eEEc----CCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEE
Confidence 36777788899988898877531 1100 00000 00 00 001111 111 245677788999999999
Q ss_pred CCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe-----EEEEEecCCCcEEE
Q 013545 133 TNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-----MTVEWSTSSEWILV 207 (441)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v-----~~v~fsp~~~~~l~ 207 (441)
.++|+.+-+.+..+.+....... + ..+..+..++.+..+|.++|+.+..+....... .+-... ++ . ++
T Consensus 137 ~~tG~~~W~~~~~~~~~ssP~v~---~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~-~-v~ 209 (394)
T PRK11138 137 AEDGEVAWQTKVAGEALSRPVVS---D-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG-G-AI 209 (394)
T ss_pred CCCCCCcccccCCCceecCCEEE---C-CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC-E-EE
Confidence 99999888777665443221111 1 245567778999999999999887665321110 111111 22 2 34
Q ss_pred EeecCCcEEEEEcCCCc
Q 013545 208 TGGCDGAIRFWDIRRAG 224 (441)
Q Consensus 208 s~s~Dg~I~iWD~~~~~ 224 (441)
.++.+|.+...|..+++
T Consensus 210 ~~~~~g~v~a~d~~~G~ 226 (394)
T PRK11138 210 VGGDNGRVSAVLMEQGQ 226 (394)
T ss_pred EEcCCCEEEEEEccCCh
Confidence 46678888888887664
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.95 E-value=6.4e-05 Score=66.89 Aligned_cols=122 Identities=17% Similarity=0.227 Sum_probs=75.9
Q ss_pred eeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee--eeEEec--cCcceEEEeeCCCc--EEEEeCCCceE
Q 013545 301 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF--ETVRLQ--TSKPIQLATTQDPA--VVFVPCMTAVK 374 (441)
Q Consensus 301 ~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~ 374 (441)
.+|.--++++.|..|..+++++ .|=+|.+|+++.-...+... ....+. ...+...-+.|... ..++.+.+.++
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 4677779999999999999876 57789999987543322111 000000 01111223333322 33455567888
Q ss_pred EEEccCCceEe----------------eecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 375 AFDIWSGKTCL----------------TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 375 ~wd~~~~~~~~----------------~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
+-|+....++. -|.+-...|.++.|+|.|+++++-+ -.+++|||..-.+
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k 312 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK 312 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc
Confidence 88876322211 1344456799999999999999763 4689999987443
No 302
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.95 E-value=2.3e-05 Score=47.27 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=34.0
Q ss_pred ceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 382 KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 382 ~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
+....+.+|...|.++.|+|+++++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44566778999999999999999999999999999996
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.92 E-value=0.016 Score=52.93 Aligned_cols=139 Identities=19% Similarity=0.256 Sum_probs=88.7
Q ss_pred EEEccCCCCcEEEEeeCCCc-EEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCC-
Q 013545 48 SLQVDLTEERYLLSGASDSS-VAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD- 125 (441)
Q Consensus 48 ~l~~s~~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D- 125 (441)
.++.+|.....++.+-.-|+ ..+||+.++.... .+..-+..+++||. +|++ ||.+|++.-.|
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~---------~~~a~~gRHFyGHg------~fs~-dG~~LytTEnd~ 72 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ---------RLWAPPGRHFYGHG------VFSP-DGRLLYTTENDY 72 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee---------EEcCCCCCEEecCE------EEcC-CCCEEEEecccc
Confidence 46677766778888888888 6799998776421 11122356778883 4554 89888887554
Q ss_pred ----CcEEEEECC-CCeEEEEEecCCe-eEEEeeccCCCCccEEEEE----------------eCCCcEEEEECCCCcee
Q 013545 126 ----HYVKVWDTN-CTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAG----------------TEDVQVRLCDIASGAIS 183 (441)
Q Consensus 126 ----~~i~iWd~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~----------------s~d~~I~vwdl~~~~~~ 183 (441)
|.|-|||.. +...+.++...|. ...+.+.+++. ..++|-| +.+-++.+.|..+|+++
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll 151 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL 151 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee
Confidence 789999998 5566666664332 23344455432 1122222 23445677778888876
Q ss_pred ee--e--cCCCCCeEEEEEecCCC
Q 013545 184 QT--L--SGHRDGIMTVEWSTSSE 203 (441)
Q Consensus 184 ~~--l--~~h~~~v~~v~fsp~~~ 203 (441)
.. + ..|.-.+.-+++.+++.
T Consensus 152 ~q~~Lp~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 152 EQVELPPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred eeeecCccccccceeeEEecCCCc
Confidence 54 5 34777788888888875
No 304
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.88 E-value=0.0026 Score=60.14 Aligned_cols=149 Identities=15% Similarity=0.186 Sum_probs=102.0
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC-cEEEEECCCCceeeeecCC
Q 013545 111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-QVRLCDIASGAISQTLSGH 189 (441)
Q Consensus 111 ~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~-~I~vwdl~~~~~~~~l~~h 189 (441)
+...+|++++..|. |...|.+...+-.+ +....+.+.-..+..+.. -++.|..|+ .+-++|..+++. +.+.+.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~i-qv~~~~~VrY~r~~~~~e---~~vigt~dgD~l~iyd~~~~e~-kr~e~~ 400 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSI-QVGKKGGVRYRRIQVDPE---GDVIGTNDGDKLGIYDKDGGEV-KRIEKD 400 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeE-EcCCCCceEEEEEccCCc---ceEEeccCCceEEEEecCCceE-EEeeCC
Confidence 33447888888877 45566555444433 233444565555554433 466777888 899999988874 556677
Q ss_pred CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN 269 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (441)
-+.|.++..+|+|+.+ +.+.....|-+.|+.+++.- .+
T Consensus 401 lg~I~av~vs~dGK~~-vvaNdr~el~vididngnv~-~i---------------------------------------- 438 (668)
T COG4946 401 LGNIEAVKVSPDGKKV-VVANDRFELWVIDIDNGNVR-LI---------------------------------------- 438 (668)
T ss_pred ccceEEEEEcCCCcEE-EEEcCceEEEEEEecCCCee-Ee----------------------------------------
Confidence 8899999999999864 55555566777787765321 00
Q ss_pred CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC----cEEEeeCCCCC
Q 013545 270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS----RIRLWDVESGR 337 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~----~i~~wd~~~~~ 337 (441)
.....+-|+..+|||+++++|-+=.+| .|+++|+.+++
T Consensus 439 ------------------------------dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 439 ------------------------------DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred ------------------------------cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 112346689999999999999877665 58999998865
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.85 E-value=0.00055 Score=69.44 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=75.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~ 194 (441)
++..++-|+....+...|+++.+..........- ...+.. ++..+..|...|+|.+-|+++.+.++++..|.+.|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEEe---cCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 3457888888888889999888776655544321 111221 235788899999999999999999999999999998
Q ss_pred EEEEecCCCcEEEEee---------cCCcEEEEEcCCC
Q 013545 195 TVEWSTSSEWILVTGG---------CDGAIRFWDIRRA 223 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s---------~Dg~I~iWD~~~~ 223 (441)
..... |. +|+||| .|.-|++||+|.-
T Consensus 222 DfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 222 DFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred eeecc--CC-eEEEeecccccccccccchhhhhhhhhh
Confidence 87665 44 578887 3666888998853
No 306
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.84 E-value=0.023 Score=57.16 Aligned_cols=89 Identities=11% Similarity=0.246 Sum_probs=61.1
Q ss_pred ecCCCCceeEEEccCCC-----------CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccccee
Q 013545 39 VSPHKGSINSLQVDLTE-----------ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAIS 107 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~-----------~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 107 (441)
+.-|...|+.+.|.|-. .-.||++.-.|.|.|||...+... --...|.++|.
T Consensus 51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~-----------------~~l~~~~~~~q 113 (1062)
T KOG1912|consen 51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI-----------------NWLSHSNDSVQ 113 (1062)
T ss_pred cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh-----------------hhhcCCCcchh
Confidence 45688999999987532 225788888899999998654321 01224666777
Q ss_pred EEEEeeC--CC-CEEEEEeCCCcEEEEECCCCeEEEEEec
Q 013545 108 SAIWYPV--DT-GLFVTGSYDHYVKVWDTNCTRVVMNFKM 144 (441)
Q Consensus 108 ~~~~~~~--~~-~~l~sgs~D~~i~iWd~~~~~~~~~~~~ 144 (441)
.+.|.+. +. ++|+.-..-.+|-+|+..+|+.+..+..
T Consensus 114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y 153 (1062)
T KOG1912|consen 114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY 153 (1062)
T ss_pred heeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc
Confidence 7777552 22 5676666778999999988887665544
No 307
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.79 E-value=0.0041 Score=59.36 Aligned_cols=241 Identities=13% Similarity=0.111 Sum_probs=139.6
Q ss_pred ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEE---------------eCC
Q 013545 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAG---------------TED 169 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~---------------s~d 169 (441)
++..+.++| .|.+|++. .-.-|.+|+-.....+..+.++ .+..+.++|.. .+|.+= ..+
T Consensus 34 p~~~~~~SP-~G~~l~~~-~~~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~---kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 34 PVAYVSESP-LGTYLFSE-HAAGVECWGGPSKAKLVRFRHP-DVKYLDFSPNE---KYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred chhheeecC-cchheehh-hccceEEccccchhheeeeecC-CceecccCccc---ceeeeeccCCccChhhccCCcccc
Confidence 455667776 57677654 4457999987766666666544 35555555542 233332 123
Q ss_pred CcEEEEECCCCceeeeecCCCCC--eE-EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccc
Q 013545 170 VQVRLCDIASGAISQTLSGHRDG--IM-TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK 246 (441)
Q Consensus 170 ~~I~vwdl~~~~~~~~l~~h~~~--v~-~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (441)
+.+.+||+.+|.++..+.+...+ .+ -+.|+-++++. |=- .-.++.|+++ ++... . . + ...
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~-ARv-v~~sl~i~e~-t~n~~----~--~-----p-~~~-- 170 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYV-ARV-VGSSLYIHEI-TDNIE----E--H-----P-FKN-- 170 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhh-hhh-ccCeEEEEec-CCccc----c--C-----c-hhh--
Confidence 46999999999998888776555 55 67888887653 221 2346888886 22100 0 0 0 000
Q ss_pred ccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC--CEEE----
Q 013545 247 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG--MYLL---- 320 (441)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~---- 320 (441)
-....|..-.|+|.+ ..||
T Consensus 171 -------------------------------------------------------lr~~gi~dFsisP~~n~~~la~~tP 195 (561)
T COG5354 171 -------------------------------------------------------LRPVGILDFSISPEGNHDELAYWTP 195 (561)
T ss_pred -------------------------------------------------------ccccceeeEEecCCCCCceEEEEcc
Confidence 001123344444442 1222
Q ss_pred -EeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC------------CCceEEEEccCCceEeee
Q 013545 321 -SAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC------------MTAVKAFDIWSGKTCLTF 387 (441)
Q Consensus 321 -sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~wd~~~~~~~~~l 387 (441)
.++.+.++++|.+..++.. .+..+-.-..+++-+...+..+.+-. ..++.++++.........
T Consensus 196 Ek~~kpa~~~i~sIp~~s~l----~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~ 271 (561)
T COG5354 196 EKLNKPAMVRILSIPKNSVL----VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK 271 (561)
T ss_pred ccCCCCcEEEEEEccCCCee----eeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec
Confidence 2567888999988855421 11122222234455555555443321 135667777643333332
Q ss_pred cccccceEEEEEcCCCCeEEEe--ecCCcEEEeCCCCCCCCCc
Q 013545 388 RGHYEYVNCCCFSSQDQELYTG--GNDRQILVWCPSRHISDGV 428 (441)
Q Consensus 388 ~gh~~~v~~v~fspd~~~l~s~--s~D~~i~vW~~~~~~~~~~ 428 (441)
+-.++|.+++|+|+++.++.. -.+.++.++++.++.+-.+
T Consensus 272 -~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~ 313 (561)
T COG5354 272 -DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYF 313 (561)
T ss_pred -cccccceeeeecccCCceeEEecccccceeecccccceEEec
Confidence 668999999999999987754 4788899999988765443
No 308
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.015 Score=56.17 Aligned_cols=120 Identities=9% Similarity=0.080 Sum_probs=73.4
Q ss_pred cCeEEEEEccCCCEEEEeec---CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEE
Q 013545 305 GAVTGLKVTEDGMYLLSAGS---DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFD 377 (441)
Q Consensus 305 ~~v~~l~~s~dg~~l~sgs~---D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd 377 (441)
..|...+|-|.|..++.-+. -.++.+|-+++......... .+.......+.++|.|..+++++. +.+..+|
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk--~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK--ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh--hhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 45788899999987665443 35788888874221111111 111223456788999998877643 4677787
Q ss_pred ccCCceEe-eecccccceEEEEEcCCCCeEEEeec------CCcEEEeCCCCCCCCC
Q 013545 378 IWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGN------DRQILVWCPSRHISDG 427 (441)
Q Consensus 378 ~~~~~~~~-~l~gh~~~v~~v~fspd~~~l~s~s~------D~~i~vW~~~~~~~~~ 427 (441)
..-..+.. ....|. ..+.+.|.|.|++++|++. |.--++|+.+...+..
T Consensus 524 ~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~~ 579 (698)
T KOG2314|consen 524 TDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLKE 579 (698)
T ss_pred cchhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecHHHHH
Confidence 75322211 222343 3688999999999999865 3445666665544443
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00029 Score=70.41 Aligned_cols=153 Identities=13% Similarity=0.178 Sum_probs=108.1
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
...++|++++ +++|+-|.-+|.+++.+.+.... .. .-|+.. ..+|.+++||
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~~-----------~~--------~~~s~~-------~~~Gey~asC 89 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNPK-----------TN--------FDHSSS-------ILEGEYVASC 89 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCCccc-----------cc--------cccccc-------ccCCceEEEe
Confidence 4788999996 47999999999999998763210 00 012211 3479999999
Q ss_pred eCCCcEEEEECCCCeEEEEEecCCeeEEEeeccC--CCCccEEEEEeCCCcEEEEECCCC-ce-eeeecCCCCCeEEEEE
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL--AASHMLIAAGTEDVQVRLCDIASG-AI-SQTLSGHRDGIMTVEW 198 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~las~s~d~~I~vwdl~~~-~~-~~~l~~h~~~v~~v~f 198 (441)
|.||+|.|-.+-+.+..+++.+.-++.+++++|+ ......+++|+.-| +.++.-+=- .. ...+..-.++|.++.|
T Consensus 90 S~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W 168 (846)
T KOG2066|consen 90 SDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW 168 (846)
T ss_pred cCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe
Confidence 9999999999988888888888888888999987 33345678888777 766653211 11 1135566789999999
Q ss_pred ecCCCcEEEEeecCCcEEEEEcCCCceeeEe
Q 013545 199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVL 229 (441)
Q Consensus 199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~ 229 (441)
.. . ++| -..|--|++||+.....+..+
T Consensus 169 ~g--~-lIA-Wand~Gv~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 169 RG--N-LIA-WANDDGVKVYDTPTRQRLTNI 195 (846)
T ss_pred cC--c-EEE-EecCCCcEEEeccccceeecc
Confidence 74 3 333 445666999999876554433
No 310
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.75 E-value=0.00036 Score=70.75 Aligned_cols=152 Identities=20% Similarity=0.315 Sum_probs=106.4
Q ss_pred ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~ 124 (441)
.|+-|+. +++++.+|..-|+|.+-|..+.+.. ....+|++.|.+... .|+.|+|||.
T Consensus 179 ~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~i-----------------ht~~aHs~siSDfDv---~GNlLitCG~ 235 (1118)
T KOG1275|consen 179 GVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETI-----------------HTFDAHSGSISDFDV---QGNLLITCGY 235 (1118)
T ss_pred ceEEEEe---cCcEEEeecccceEEeecCCcCcee-----------------eeeeccccceeeeec---cCCeEEEeec
Confidence 3666655 4689999999999999998755421 123478888876655 4789999987
Q ss_pred ---------CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC---CCC-ceeeeecCCCC
Q 013545 125 ---------DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI---ASG-AISQTLSGHRD 191 (441)
Q Consensus 125 ---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl---~~~-~~~~~l~~h~~ 191 (441)
|.-|++||++..+.+.-+.++-...-+.|+|.-. ..+++++..|...+.|. ... .-.+.+.....
T Consensus 236 S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~--t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s 313 (1118)
T KOG1275|consen 236 SMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLT--TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS 313 (1118)
T ss_pred ccccccccccchhhhhhhhhhhccCCcccccCchhhhhccccc--ceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence 6778999998877665555443333445566433 35677778899999993 332 11233334455
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~ 222 (441)
.+.+..++++++ .|+-|..+|.|.+|--+.
T Consensus 314 ~i~~fDiSsn~~-alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 314 GISAFDISSNGD-ALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred cceeEEecCCCc-eEEEecccCcEeeecCCC
Confidence 589999999987 578899999999997443
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0047 Score=62.61 Aligned_cols=203 Identities=15% Similarity=0.240 Sum_probs=121.2
Q ss_pred ccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCc-----EEEEEcCCCceeeEeccCCc
Q 013545 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA-----IRFWDIRRAGCFRVLDQSQS 234 (441)
Q Consensus 160 ~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~-----I~iWD~~~~~~~~~~~~~~~ 234 (441)
...++.|+.+|.|.+.+- .-+.++.+..+...+...-+.-++..+|+|-+.|+. ++|||+.... ...+
T Consensus 35 ~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~------~n~s 107 (933)
T KOG2114|consen 35 TGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD------KNNS 107 (933)
T ss_pred CceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC------CCCC
Confidence 446778888887777663 223346677666663333344444457888887764 8999986421 0000
Q ss_pred cccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc
Q 013545 235 QLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE 314 (441)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 314 (441)
|..... .+..+. ...-...++.+|++|.
T Consensus 108 -----P~c~~~-----------------------------------------~ri~~~------~np~~~~p~s~l~Vs~ 135 (933)
T KOG2114|consen 108 -----PQCLYE-----------------------------------------HRIFTI------KNPTNPSPASSLAVSE 135 (933)
T ss_pred -----cceeee-----------------------------------------eeeecc------CCCCCCCcceEEEEEc
Confidence 000000 000000 0001245788999999
Q ss_pred CCCEEEEeecCCcEEEee--CCCCCceeeeeeeEEeccCcceEEEeeCCCcE-EEEeCCCceEEEEccCCc-eEeeeccc
Q 013545 315 DGMYLLSAGSDSRIRLWD--VESGRNTLVNFETVRLQTSKPIQLATTQDPAV-VFVPCMTAVKAFDIWSGK-TCLTFRGH 390 (441)
Q Consensus 315 dg~~l~sgs~D~~i~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~wd~~~~~-~~~~l~gh 390 (441)
+-+.+|.|=.||.|.++- +...+.....+. .....++.-+++..++.. +++++...|.+|.+.... .+.++..|
T Consensus 136 ~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~--~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~ 213 (933)
T KOG2114|consen 136 DLKTIVCGFTNGLVICYKGDILRDRGSRQDYS--HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN 213 (933)
T ss_pred cccEEEEEecCcEEEEEcCcchhccccceeee--ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC
Confidence 999999999999999984 333222211111 111233445667767665 677778899999997433 25668889
Q ss_pred ccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 391 YEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 391 ~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
...++|..|++....++.|+ +..+.+++.+...
T Consensus 214 G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 214 GISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred CccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 99999999998765344333 4457788876433
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.70 E-value=0.036 Score=50.08 Aligned_cols=223 Identities=16% Similarity=0.161 Sum_probs=128.4
Q ss_pred EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCc
Q 013545 48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHY 127 (441)
Q Consensus 48 ~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~ 127 (441)
+..|.+.++.++++--..+.|..||..++... ++. .. ....+++...++ .|+.+..++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-----------~~~-------~~--~~~G~~~~~~~g-~l~v~~~~~- 61 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-----------VID-------LP--GPNGMAFDRPDG-RLYVADSGG- 61 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-----------EEE-------SS--SEEEEEEECTTS-EEEEEETTC-
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-----------EEe-------cC--CCceEEEEccCC-EEEEEEcCc-
Confidence 45677656778888888899999998765421 010 00 133455553454 555555554
Q ss_pred EEEEECCCCeEEEEEec--C----CeeEEEeeccCCCCccEEEEEeCC--------CcEEEEECCCCceeeeecCCCCCe
Q 013545 128 VKVWDTNCTRVVMNFKM--P----GKVYRTAMSPLAASHMLIAAGTED--------VQVRLCDIASGAISQTLSGHRDGI 193 (441)
Q Consensus 128 i~iWd~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~las~s~d--------~~I~vwdl~~~~~~~~l~~h~~~v 193 (441)
+.++|+.+++....... . ...+.+.+.+.+ . +.++.... +.|..++.. ++..... ..-...
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G--~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~p 136 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG--N-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFP 136 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSE
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC--C-EEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccc
Confidence 45559998876544433 1 224556666543 2 33333322 457777776 5533333 335556
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCce-eeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (441)
..++|+|+++.++++-+..+.|..+|+..... +...+.
T Consensus 137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~----------------------------------------- 175 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRV----------------------------------------- 175 (246)
T ss_dssp EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEE-----------------------------------------
T ss_pred cceEECCcchheeecccccceeEEEeccccccceeeeee-----------------------------------------
Confidence 89999999987777778888888888753211 100000
Q ss_pred ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352 (441)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~ 352 (441)
... ...-.+..-.+++..+|+..++.-..+.|.++|.. ++. ...+......
T Consensus 176 -------------~~~-----------~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~----~~~i~~p~~~ 226 (246)
T PF08450_consen 176 -------------FID-----------FPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL----LREIELPVPR 226 (246)
T ss_dssp -------------EEE------------SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE----EEEEE-SSSS
T ss_pred -------------EEE-----------cCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE----EEEEcCCCCC
Confidence 000 00001235678999999999988889999999988 542 2233334345
Q ss_pred ceEEEee-CCCcEEEE
Q 013545 353 PIQLATT-QDPAVVFV 367 (441)
Q Consensus 353 ~~~~~~~-~~~~~~~~ 367 (441)
+..+++. ++...+++
T Consensus 227 ~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 227 PTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEEEESTTSSEEEE
T ss_pred EEEEEEECCCCCEEEE
Confidence 6667773 55555544
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0015 Score=65.59 Aligned_cols=155 Identities=18% Similarity=0.272 Sum_probs=101.4
Q ss_pred ecCCCCceeEEEccCC------------CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccce
Q 013545 39 VSPHKGSINSLQVDLT------------EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAI 106 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~------------~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 106 (441)
+..|.+.|.-..+... +|.|++|||.||+|.|-.+.+.... +...-..++
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~------------------~~~df~rpi 115 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEI------------------TQYDFKRPI 115 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccc------------------eeEecCCcc
Confidence 4578888887776533 3889999999999999887655421 001122356
Q ss_pred eEEEEeeC----CCCEEEEEeCCCcEEEEECC---CCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC
Q 013545 107 SSAIWYPV----DTGLFVTGSYDHYVKVWDTN---CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS 179 (441)
Q Consensus 107 ~~~~~~~~----~~~~l~sgs~D~~i~iWd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~ 179 (441)
.+++++|. ...++++||.-| +-++.=+ ....+......|.+.++.+.. .++|=++.+| |++||+.+
T Consensus 116 ksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g-----~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 116 KSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG-----NLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred eeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC-----cEEEEecCCC-cEEEeccc
Confidence 66666653 356899999988 6666421 112222234567788877764 3677666555 99999999
Q ss_pred CceeeeecCCCCCe------EEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 180 GAISQTLSGHRDGI------MTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 180 ~~~~~~l~~h~~~v------~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
++.+..++.....+ ..+.|.++.. |+- |+--+|+|..++
T Consensus 189 ~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 189 RQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVI-GWGDSVKICSIK 233 (846)
T ss_pred cceeeccCCCCCCCCcccCCCceEecCCCe--EEE-ecCCeEEEEEEe
Confidence 88776655332322 3577877653 343 577789999887
No 314
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.68 E-value=1e-05 Score=78.43 Aligned_cols=170 Identities=18% Similarity=0.257 Sum_probs=106.6
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEe----eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEE
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSG----ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW 111 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 111 (441)
.++.++|....++++|++-+..+||.| -.|-.+.|||+.+.-..+ .....+.. +...++.+++|
T Consensus 95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP------ke~~~fs~------~~l~gqns~cw 162 (783)
T KOG1008|consen 95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP------KESPLFSS------STLDGQNSVCW 162 (783)
T ss_pred ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC------cccccccc------ccccCcccccc
Confidence 466778999999999998766667666 235678999997653211 00011100 12223445666
Q ss_pred eeCCCCEEEEEeCCCcEEEEECCCCeE-EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC--CceeeeecC
Q 013545 112 YPVDTGLFVTGSYDHYVKVWDTNCTRV-VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS--GAISQTLSG 188 (441)
Q Consensus 112 ~~~~~~~l~sgs~D~~i~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~--~~~~~~l~~ 188 (441)
. .+.+++++|...+.+.++|++.... ...+. ...+..+.+.|+. ..++++-. |+.|.+||... .++++.+..
T Consensus 163 l-rd~klvlaGm~sr~~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~--~nY~cs~~-dg~iAiwD~~rnienpl~~i~~ 237 (783)
T KOG1008|consen 163 L-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-TKYVQGITVDPFS--PNYFCSNS-DGDIAIWDTYRNIENPLQIILR 237 (783)
T ss_pred c-cCcchhhcccccchhhhhhhhhhhhhhhhhh-hhhcccceecCCC--CCceeccc-cCceeeccchhhhccHHHHHhh
Confidence 6 4778899999999999999873221 11111 1123334455543 34666654 99999999422 233333332
Q ss_pred CCC----CeEEEEEecCCCcEEEEeecC-CcEEEEEcCC
Q 013545 189 HRD----GIMTVEWSTSSEWILVTGGCD-GAIRFWDIRR 222 (441)
Q Consensus 189 h~~----~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~ 222 (441)
.+. .+..++|+|-...++++.+.| ++|+++|+..
T Consensus 238 ~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 238 NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 222 489999999877778888776 7999999874
No 315
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0076 Score=55.95 Aligned_cols=73 Identities=15% Similarity=0.379 Sum_probs=62.8
Q ss_pred eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545 148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (441)
Q Consensus 148 ~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~ 223 (441)
+..++++|... -++..++.+..|+|.|+++......+..| ..+++.+|.-+....+..|-.+|.|-+||+|..
T Consensus 196 IrdlafSp~~~--GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 196 IRDLAFSPFNE--GLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred hhhhccCcccc--ceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 66778888643 37888899999999999999888888777 789999999988888889999999999999864
No 316
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.0024 Score=64.47 Aligned_cols=102 Identities=17% Similarity=0.303 Sum_probs=77.0
Q ss_pred CCCEEEEEeC----CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC
Q 013545 115 DTGLFVTGSY----DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR 190 (441)
Q Consensus 115 ~~~~l~sgs~----D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~ 190 (441)
..++||.++- -|.|.|+ ..+|++-.....+-++.+++|+|- ..+|++|-.-|.+.+|...+.+.......|+
T Consensus 26 sePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe---~~vLa~gwe~g~~~v~~~~~~e~htv~~th~ 101 (1416)
T KOG3617|consen 26 SEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPE---EFVLAQGWEMGVSDVQKTNTTETHTVVETHP 101 (1416)
T ss_pred CCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChH---HHHHhhccccceeEEEecCCceeeeeccCCC
Confidence 4556665543 4677777 345554443444444566777773 4688999999999999999888776777899
Q ss_pred CCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
.++..+.|||+|. .|+|+..=|.+.+|...
T Consensus 102 a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 102 APIQGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 9999999999997 57899999999999765
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.56 E-value=0.0043 Score=60.56 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=65.8
Q ss_pred EEEEECCCCceeee---ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccc
Q 013545 172 VRLCDIASGAISQT---LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSL 248 (441)
Q Consensus 172 I~vwdl~~~~~~~~---l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (441)
-.+|++..++..+. --.....|.|.+++|+.+. |+.|+.||+|.+||...+....
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~~--------------------- 295 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTLL--------------------- 295 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCeeee---------------------
Confidence 35677665543211 1246788999999999875 6889999999999986531100
Q ss_pred ccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcE
Q 013545 249 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI 328 (441)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i 328 (441)
..+.-.++.++|||+|..+++|+.-|.+
T Consensus 296 ----------------------------------------------------~ka~~~P~~iaWHp~gai~~V~s~qGel 323 (545)
T PF11768_consen 296 ----------------------------------------------------AKAEFIPTLIAWHPDGAIFVVGSEQGEL 323 (545)
T ss_pred ----------------------------------------------------eeecccceEEEEcCCCcEEEEEcCCceE
Confidence 0011235678999999999999999999
Q ss_pred EEeeCCCC
Q 013545 329 RLWDVESG 336 (441)
Q Consensus 329 ~~wd~~~~ 336 (441)
.+||+.-.
T Consensus 324 Q~FD~ALs 331 (545)
T PF11768_consen 324 QCFDMALS 331 (545)
T ss_pred EEEEeecC
Confidence 99998743
No 318
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0053 Score=56.94 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=63.9
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
++.+|...|-.|+|||.+..+|..++.+.+|+|.|+++.... .....| ..+++++|.-.+..
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v-----------------ssy~a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV-----------------SSYIAY-NQIWSCCWDLDERH 249 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceee-----------------eheecc-CCceeeeeccCCcc
Confidence 556788899999999877668999999999999999865321 111234 57889999776777
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 013545 118 LFVTGSYDHYVKVWDTNCT 136 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~ 136 (441)
++..|-..|.|-|+|++..
T Consensus 250 ~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred eeEEeccCceEEEEEccCC
Confidence 8888888999999998753
No 319
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.49 E-value=0.001 Score=64.68 Aligned_cols=87 Identities=22% Similarity=0.381 Sum_probs=64.1
Q ss_pred EEECCCCeE----EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcE
Q 013545 130 VWDTNCTRV----VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWI 205 (441)
Q Consensus 130 iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~ 205 (441)
+|++...++ +..++++..+.+++.+|.. ..|+.|+.||+|.+||...+... +..+.-.++.++|+|+|. +
T Consensus 240 iYE~~r~klqrvsvtsipL~s~v~~ca~sp~E---~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~ga-i 313 (545)
T PF11768_consen 240 IYECSRNKLQRVSVTSIPLPSQVICCARSPSE---DKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGA-I 313 (545)
T ss_pred EEEeecCceeEEEEEEEecCCcceEEecCccc---ceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCc-E
Confidence 455544332 3445667778888887753 47888999999999999776432 223445568999999997 6
Q ss_pred EEEeecCCcEEEEEcCC
Q 013545 206 LVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 206 l~s~s~Dg~I~iWD~~~ 222 (441)
++.|+..|.+++||+.-
T Consensus 314 ~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 314 FVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEcCCceEEEEEeec
Confidence 78899999999999863
No 320
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.49 E-value=0.00026 Score=42.35 Aligned_cols=38 Identities=32% Similarity=0.677 Sum_probs=32.6
Q ss_pred ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219 (441)
Q Consensus 181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD 219 (441)
+++..+..|...|.++.|.|.+. ++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 45567778999999999999876 678999999999996
No 321
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.0011 Score=63.73 Aligned_cols=101 Identities=12% Similarity=0.092 Sum_probs=67.3
Q ss_pred eEEEEEccCCCEEEEeecC-----------CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEE
Q 013545 307 VTGLKVTEDGMYLLSAGSD-----------SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKA 375 (441)
Q Consensus 307 v~~l~~s~dg~~l~sgs~D-----------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (441)
|.-+.|||+.+||+|=|.. ..++|||+.+|... ..|+..+.....-..+-++.|..+++.-...++.+
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk-rsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisI 330 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK-RSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISI 330 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh-cceeccCCCccccceEEeccCCceeEEeccceEEE
Confidence 6778999999999985542 57899999998632 22333221112223456778888877766788888
Q ss_pred EEccCCceEeeecccccceEEEEEcCCCCeEEE
Q 013545 376 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT 408 (441)
Q Consensus 376 wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s 408 (441)
++..+-.++..-.-....|....|||-+..||-
T Consensus 331 yEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 331 YETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EecCceeeecccccCCccccCcccCCCcceEEE
Confidence 887654443322233456888999998777763
No 322
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.036 Score=55.86 Aligned_cols=115 Identities=22% Similarity=0.378 Sum_probs=87.2
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCC---------CCccEEEEEeCCCcEEEEEC
Q 013545 108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLA---------ASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~las~s~d~~I~vwdl 177 (441)
++.|++ +.++|-|+.. .|.+-|..+.+.+..+.++ ..+..+.+.|.. ....+||++.-.|.|.+||.
T Consensus 20 A~Dw~~--~GLiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 20 AADWSP--SGLIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccCc--cceEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 445654 4588888775 7888898888888777654 446666665532 13457888888999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecC---CCcEEEEeecCCcEEEEEcCCCce
Q 013545 178 ASGAISQTLSGHRDGIMTVEWSTS---SEWILVTGGCDGAIRFWDIRRAGC 225 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~v~~v~fsp~---~~~~l~s~s~Dg~I~iWD~~~~~~ 225 (441)
..+..+..+..|.+.+..+.|-|. ++.+|+.-+.-.+|.+|+..+|..
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 999888889999999988888764 445677777788999999988754
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.30 E-value=0.011 Score=59.07 Aligned_cols=103 Identities=11% Similarity=0.103 Sum_probs=62.2
Q ss_pred EEEEEeCCCcEEEEEC---CCCeEEEEEecCCeeEEEeeccCC-----CCccEEEEEeCCCcEEEEECCC-----Cceee
Q 013545 118 LFVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLA-----ASHMLIAAGTEDVQVRLCDIAS-----GAISQ 184 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~---~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~las~s~d~~I~vwdl~~-----~~~~~ 184 (441)
..+..+.|+..-.... +.+..+..+.....-..+.+.... ........ .++.|.+.|..+ .+.+.
T Consensus 238 d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~ 315 (635)
T PRK02888 238 DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTR 315 (635)
T ss_pred ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEE
Confidence 4666677887666553 444444433322221222232210 01112222 256799999988 34555
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (441)
Q Consensus 185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~ 223 (441)
.+. =......+.++||++++++++..+.+|.+.|+.+.
T Consensus 316 yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 316 YVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred EEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 554 23445789999999999999989999999999753
No 324
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.031 Score=55.77 Aligned_cols=123 Identities=14% Similarity=0.118 Sum_probs=69.2
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
..+.||++.|--+.|+ .+.+-|-|...+|-|.+|-+.++.=.+. -+ ....+..|.++.|.. ||
T Consensus 65 QtLeGH~~sV~vvTWN-e~~QKLTtSDt~GlIiVWmlykgsW~EE--Mi-------------NnRnKSvV~SmsWn~-dG 127 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWN-ENNQKLTTSDTSGLIIVWMLYKGSWCEE--MI-------------NNRNKSVVVSMSWNL-DG 127 (1189)
T ss_pred hhhccCcceEEEEEec-cccccccccCCCceEEEEeeecccHHHH--Hh-------------hCcCccEEEEEEEcC-CC
Confidence 4567999999999998 4455688999999999999876642210 00 011223344555543 55
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~ 180 (441)
..+...-.||.|.+=.+... .+....+.+. ..-+.++++. .++..+-.+|.+.++|.+..
T Consensus 128 ~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~hv~ws~D~---~~~Lf~~ange~hlydnqgn 188 (1189)
T KOG2041|consen 128 TKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAHVLWSEDL---EQALFKKANGETHLYDNQGN 188 (1189)
T ss_pred cEEEEEEccCCEEEEeeccc-eecchhcchheccceeecccH---HHHHhhhcCCcEEEeccccc
Confidence 55555555555544333211 1111111111 1123455542 34445677899999998644
No 325
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.00028 Score=71.29 Aligned_cols=72 Identities=18% Similarity=0.311 Sum_probs=56.5
Q ss_pred eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC-cEEEEEcCC
Q 013545 148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG-AIRFWDIRR 222 (441)
Q Consensus 148 ~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg-~I~iWD~~~ 222 (441)
..+++|+.. ...|+.|+-.|.|+++++.+|.......+|.++|+-+.=+.+|...|.++++.. -..+|++.+
T Consensus 1104 fTc~afs~~---~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1104 FTCIAFSGG---TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred eeeEEeecC---CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 445556553 346889999999999999999988889999999999998888886665555544 577888753
No 326
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.20 E-value=0.027 Score=43.10 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=65.3
Q ss_pred eeEEEEeeCCC---CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce
Q 013545 106 ISSAIWYPVDT---GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182 (441)
Q Consensus 106 V~~~~~~~~~~---~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~ 182 (441)
|.+++++..++ +-|+.||.|..||+|+- ...+..++..+.+..+.-... ..++-+..+|+|-+|+- ...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~----~~F~Y~l~NGTVGvY~~--~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG----GRFAYALANGTVGVYDR--SQR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC----CEEEEEecCCEEEEEeC--cce
Confidence 45566555443 47999999999999974 366667776666665544332 35888899999999975 333
Q ss_pred eeeecCCCCCeEEEEEec---CCCcEEEEeecCCcEE
Q 013545 183 SQTLSGHRDGIMTVEWST---SSEWILVTGGCDGAIR 216 (441)
Q Consensus 183 ~~~l~~h~~~v~~v~fsp---~~~~~l~s~s~Dg~I~ 216 (441)
+..++.- ..+.++.+.. +|..-|++|=.+|.|-
T Consensus 74 lWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4444432 2355655443 2333467887777764
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.13 Score=52.71 Aligned_cols=210 Identities=15% Similarity=0.196 Sum_probs=117.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC-----cEEEEECCCC------cee
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-----QVRLCDIASG------AIS 183 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~-----~I~vwdl~~~------~~~ 183 (441)
.+..++-|+.||.|-+.+-. -+.+..++....- .+.+-.......+|++-..|. .+++||++.- .++
T Consensus 34 ~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~ 111 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCL 111 (933)
T ss_pred CCceEEEeeccccEEEeccc-ceeeehheecchh-hhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCccee
Confidence 57799999999988777532 1222333321111 111111122334555555444 4899999632 222
Q ss_pred e--eecC-----CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545 184 Q--TLSG-----HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256 (441)
Q Consensus 184 ~--~l~~-----h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (441)
. .+.+ .+.++.+++.+.+-+ .+|.|=.||.|-.+-=. ..+. .
T Consensus 112 ~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GD---i~RD-------------------r-------- 160 (933)
T KOG2114|consen 112 YEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGD---ILRD-------------------R-------- 160 (933)
T ss_pred eeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCc---chhc-------------------c--------
Confidence 1 1222 356688899988865 46788888988877311 0000 0
Q ss_pred CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC
Q 013545 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
+. ... ....-..+|++|++-.+++.++=...-.+|.+|.+...
T Consensus 161 --------------------------gs-r~~----------~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 161 --------------------------GS-RQD----------YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred --------------------------cc-cee----------eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence 00 000 00011357999999999987333334467999999843
Q ss_pred CceeeeeeeEEeccCcceEEEeeCCCcE-EEEeCCCceEEEEccCCceEeeec-ccccceEEEE
Q 013545 337 RNTLVNFETVRLQTSKPIQLATTQDPAV-VFVPCMTAVKAFDIWSGKTCLTFR-GHYEYVNCCC 398 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~wd~~~~~~~~~l~-gh~~~v~~v~ 398 (441)
.+..+ . .-..+.+..+....+++. ++++....+..|+....+.+-+|. ||+..+.++.
T Consensus 204 ~p~~~---~-ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~ 263 (933)
T KOG2114|consen 204 TPSLK---V-LDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFS 263 (933)
T ss_pred Cccee---e-eccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEe
Confidence 21111 1 112333444444455555 666666788999988777777887 8877665543
No 328
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.05 E-value=0.019 Score=59.61 Aligned_cols=106 Identities=13% Similarity=0.174 Sum_probs=69.2
Q ss_pred eeCCCCEEEE-EeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCC----CccEEEEEeCCCcEEEEECCCC--ceee
Q 013545 112 YPVDTGLFVT-GSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAA----SHMLIAAGTEDVQVRLCDIASG--AISQ 184 (441)
Q Consensus 112 ~~~~~~~l~s-gs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~las~s~d~~I~vwdl~~~--~~~~ 184 (441)
+..+..+|+. ......|.--|++.|+++..++.+..+....+.|... ...-...|-.++.+..||.+-. +++.
T Consensus 489 ~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 489 HDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred hccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence 3334555443 3456788888999999999998865443344444321 1112345667889999998753 2221
Q ss_pred -eec--CCCCCeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545 185 -TLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219 (441)
Q Consensus 185 -~l~--~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD 219 (441)
... ......+|++-..+|. +|.||.+|.||+||
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~--iavgs~~G~IRLyd 604 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGY--IAVGSNKGDIRLYD 604 (794)
T ss_pred ccccccccCCCceEEEecCCce--EEEEeCCCcEEeec
Confidence 111 1344578888888774 68999999999998
No 329
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.04 E-value=0.28 Score=45.71 Aligned_cols=241 Identities=15% Similarity=0.122 Sum_probs=123.1
Q ss_pred CCCcEEEEECCCCeEEEEEecCCe-eEE-------EeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545 124 YDHYVKVWDTNCTRVVMNFKMPGK-VYR-------TAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~ 195 (441)
....|.+||..+-.+...+.++.+ -.. +.++.++. ..++.-.+.-.+|.|.|++.++.+.++.-.. |
T Consensus 65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C 139 (342)
T PF06433_consen 65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----C 139 (342)
T ss_dssp EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEGTS----E
T ss_pred ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCc-EEEEEccCCCCeEEEEECCCCceeeeecCCC----E
Confidence 356799999999999888887764 211 12222211 1223333444568888888888777664221 2
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCC-CCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR-PPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS 274 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (441)
...-|.++.-|.+-+.||++.-..+...+....- . ...+... .++.... ....
T Consensus 140 ~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~-~-t~~F~~~~dp~f~~~------------------------~~~~ 193 (342)
T PF06433_consen 140 WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK-S-TKVFDPDDDPLFEHP------------------------AYSR 193 (342)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE-E-EEESSTTTS-B-S--------------------------EEET
T ss_pred EEEEecCCCceEEEecCCceEEEEECCCCCEeEe-e-ccccCCCCccccccc------------------------ceEC
Confidence 2333444344677788999999888743221100 0 0000000 0000000 0000
Q ss_pred CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 354 (441)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 354 (441)
..+. --+....+.|..++++.+.-.+ ..-|.+.+.... ......++-.
T Consensus 194 ~~~~-------------------~~F~Sy~G~v~~~dlsg~~~~~--------~~~~~~~t~~e~-----~~~WrPGG~Q 241 (342)
T PF06433_consen 194 DGGR-------------------LYFVSYEGNVYSADLSGDSAKF--------GKPWSLLTDAEK-----ADGWRPGGWQ 241 (342)
T ss_dssp TTTE-------------------EEEEBTTSEEEEEEETTSSEEE--------EEEEESS-HHHH-----HTTEEE-SSS
T ss_pred CCCe-------------------EEEEecCCEEEEEeccCCcccc--------cCcccccCcccc-----ccCcCCccee
Confidence 0000 0011234556667776655322 223444321100 0011223333
Q ss_pred EEEeeCCCcEEEEeC-----------CCceEEEEccCCceEeeecccccceEEEEEcCCCC-eEEEe-ecCCcEEEeCCC
Q 013545 355 QLATTQDPAVVFVPC-----------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTG-GNDRQILVWCPS 421 (441)
Q Consensus 355 ~~~~~~~~~~~~~~~-----------~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~-~l~s~-s~D~~i~vW~~~ 421 (441)
.+++.+....+++-. ...+-++|+.+++.+..+.. ..++.+|++|.|.+ +|++. ..++.+.+||..
T Consensus 242 ~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 242 LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp -EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 455555444444321 12477778999999888774 24588999999987 56554 457899999999
Q ss_pred CCCCCCc
Q 013545 422 RHISDGV 428 (441)
Q Consensus 422 ~~~~~~~ 428 (441)
++++.+.
T Consensus 321 tGk~~~~ 327 (342)
T PF06433_consen 321 TGKLVRS 327 (342)
T ss_dssp T--EEEE
T ss_pred CCcEEee
Confidence 9886544
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.00 E-value=0.38 Score=46.59 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=76.2
Q ss_pred ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccC-CC--Cce----------eccceeEEeec-------------cc
Q 013545 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE-GG--GHI----------AKHRSVFVVDK-------------QH 98 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~--~~~----------~~~~~~~~~~~-------------~~ 98 (441)
.|+.+.|++...+ |+.|-..|.+-||.......+. .. ... .....+..+.. ..
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5888999865454 8888889999998654332221 00 000 00011111110 01
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---------eeEEEeecc-----CCCCccEEE
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---------KVYRTAMSP-----LAASHMLIA 164 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~---------~~~~~~~~~-----~~~~~~~la 164 (441)
.....+.|++++.+ |-.++|.|..||++.|.|++....+....... .+..+.|.. +..+..++.
T Consensus 82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 12346788888876 45699999999999999999888887654432 233444442 233457889
Q ss_pred EEeCCCcEEEEECC
Q 013545 165 AGTEDVQVRLCDIA 178 (441)
Q Consensus 165 s~s~d~~I~vwdl~ 178 (441)
+|+..|.+.+|.+-
T Consensus 160 vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 160 VGTNSGNVLTFKIL 173 (395)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EEeCCCCEEEEEEe
Confidence 99999999999874
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.90 E-value=0.16 Score=54.09 Aligned_cols=111 Identities=17% Similarity=0.214 Sum_probs=70.5
Q ss_pred EEEEEccCCCEEEE-----eecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEc
Q 013545 308 TGLKVTEDGMYLLS-----AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDI 378 (441)
Q Consensus 308 ~~l~~s~dg~~l~s-----gs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~ 378 (441)
++|.|--||.++|+ ...-+.|++||-+ +.... .-........++++.|.|..+++... +.+..|.-
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns----~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr 273 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS----TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER 273 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc----ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence 46899999999887 3333899999977 32110 00111222345778888877766532 23555543
Q ss_pred cCC----ceEeeecccccceEEEEEcCCCCeEEE---eecCCcEEEeCCCCCC
Q 013545 379 WSG----KTCLTFRGHYEYVNCCCFSSQDQELYT---GGNDRQILVWCPSRHI 424 (441)
Q Consensus 379 ~~~----~~~~~l~gh~~~v~~v~fspd~~~l~s---~s~D~~i~vW~~~~~~ 424 (441)
+| .....+.....+|..++|+.++..|+. ......|++|.....+
T Consensus 274 -NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 274 -NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred -CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 23 222234455566999999999999987 5555669999886544
No 332
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.78 E-value=0.13 Score=39.45 Aligned_cols=104 Identities=17% Similarity=0.150 Sum_probs=59.6
Q ss_pred eeEEEccC---CCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 46 INSLQVDL---TEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 46 V~~l~~s~---~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
|++|++.. ++.+-|+.||.|..||||+-.... ..+ .-+..|.++.... ..+|+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~--------------~Ei------~e~~~v~~L~~~~--~~~F~Y~ 59 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV--------------AEI------TETDKVTSLCSLG--GGRFAYA 59 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE--------------EEE------ecccceEEEEEcC--CCEEEEE
Confidence 67776542 223579999999999999854211 111 1123455555543 4689999
Q ss_pred eCCCcEEEEECCCCeEEEEEecCCeeEEEeecc-CCCCccEEEEEeCCCcEE
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSP-LAASHMLIAAGTEDVQVR 173 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~las~s~d~~I~ 173 (441)
-.+|+|-+|+-. ..+...+....+.++.+.. ...+..-|++|-.+|.|.
T Consensus 60 l~NGTVGvY~~~--~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 60 LANGTVGVYDRS--QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecCCEEEEEeCc--ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 999998888642 2222222222333333332 223344577787777764
No 333
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.77 E-value=0.0033 Score=54.12 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=66.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC-CCeE
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-DGIM 194 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~-~~v~ 194 (441)
+.-++.|+.|+.|.+|.....-........+...-....|...+..+..++..|+.|+.|+++-++.+....+|. ..+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 456889999999999987521111111111111111223344445578889999999999999988877777777 5555
Q ss_pred EEEEecCCCcEEEEe--ecCCcEEEEEcCC
Q 013545 195 TVEWSTSSEWILVTG--GCDGAIRFWDIRR 222 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~--s~Dg~I~iWD~~~ 222 (441)
....+..++ +++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDE-FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCc-eEEeeccccchhhhhcchhh
Confidence 544444444 45555 6777777777654
No 334
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.72 E-value=0.78 Score=46.11 Aligned_cols=117 Identities=15% Similarity=0.230 Sum_probs=65.5
Q ss_pred EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccccee-EEEEeeCCCCEEEEEeCCCcEEEEECCCC
Q 013545 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAIS-SAIWYPVDTGLFVTGSYDHYVKVWDTNCT 136 (441)
Q Consensus 58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~l~sgs~D~~i~iWd~~~~ 136 (441)
.+..++.|+.+.-.|..+++.. ..... ...........+. .+... +++.++.++.|+.|.-+|.+++
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~------W~~~~----~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG 130 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVL------WRYDP----KLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETG 130 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhh------ceeCC----CCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCC
Confidence 5777788899999998877531 00000 0000000000000 01111 2257888889999999999999
Q ss_pred eEEEEEecCCee---EEEeeccCCCCccEEEEEe---------CCCcEEEEECCCCceeeeec
Q 013545 137 RVVMNFKMPGKV---YRTAMSPLAASHMLIAAGT---------EDVQVRLCDIASGAISQTLS 187 (441)
Q Consensus 137 ~~~~~~~~~~~~---~~~~~~~~~~~~~~las~s---------~d~~I~vwdl~~~~~~~~l~ 187 (441)
+.+-.+...... ..+..+|.-.. .+++.++ .++.+..+|.++|+.+..+.
T Consensus 131 ~~~W~~~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 131 KQVWKFGNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CEeeeecCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 998877665431 11111221111 2344443 35788999999999877654
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.70 E-value=0.017 Score=57.52 Aligned_cols=114 Identities=21% Similarity=0.348 Sum_probs=77.6
Q ss_pred CCCCccEEEEEeCCCcEEEEECCCCceee-eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCc
Q 013545 156 LAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234 (441)
Q Consensus 156 ~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~ 234 (441)
+.....+++.|++-|.+.+|+-..++... ...+-.+.+.....+++. +++|.|+..|.|.++-+....
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~---------- 109 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKEL---------- 109 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccC----------
Confidence 33345689999999999999988876543 233434444556667665 567888888888888765310
Q ss_pred cccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc
Q 013545 235 QLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE 314 (441)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 314 (441)
++.. . .+.+. .+.|...|++++|++
T Consensus 110 -----p~~~---------~----------------------------------~~t~~-------d~~~~~rVTal~Ws~ 134 (726)
T KOG3621|consen 110 -----PRDL---------D----------------------------------YVTPC-------DKSHKCRVTALEWSK 134 (726)
T ss_pred -----CCcc---------e----------------------------------eeccc-------cccCCceEEEEEecc
Confidence 0000 0 00000 123677899999999
Q ss_pred CCCEEEEeecCCcEEEeeCCC
Q 013545 315 DGMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 315 dg~~l~sgs~D~~i~~wd~~~ 335 (441)
|++.+.+|..-|+|.+-.+.+
T Consensus 135 ~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 135 NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccEEeecCCCceEEEEEech
Confidence 999999999999999988776
No 336
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.13 Score=50.00 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=72.5
Q ss_pred eCCCCE-EEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccE----EEEEeCCCcEEEEECCCC-c-eeee
Q 013545 113 PVDTGL-FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHML----IAAGTEDVQVRLCDIASG-A-ISQT 185 (441)
Q Consensus 113 ~~~~~~-l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----las~s~d~~I~vwdl~~~-~-~~~~ 185 (441)
..+.++ |.++..-..+.--|++.|+.+..++....+..+.+.|+.....+ -..|-+|+.|.-||.+-. + .+..
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 334444 45666677788889999999999998877777777776544332 234667899999998632 2 2222
Q ss_pred ecCC----CCCeEEEEEecCCCcEEEEeecCCcEEEEEc
Q 013545 186 LSGH----RDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220 (441)
Q Consensus 186 l~~h----~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~ 220 (441)
.++| .....|.+-..+| .+|.||.+|.||+||-
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR 458 (644)
T ss_pred eeccccccccccceeeecCCc--eEEEeecCCcEEeehh
Confidence 2333 2345677766666 3688999999999984
No 337
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.45 E-value=0.73 Score=42.41 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=62.6
Q ss_pred EEEeeCCCCEEEEEeCCCc-EEEEECCCCeEEEEEecC-CeeE--EEeeccCCCCccEEEEE-----eCCCcEEEEECC-
Q 013545 109 AIWYPVDTGLFVTGSYDHY-VKVWDTNCTRVVMNFKMP-GKVY--RTAMSPLAASHMLIAAG-----TEDVQVRLCDIA- 178 (441)
Q Consensus 109 ~~~~~~~~~~l~sgs~D~~-i~iWd~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~las~-----s~d~~I~vwdl~- 178 (441)
++.+|.+...++-+-.-++ ..+||..+++....+..+ +..+ --.|++++. +|.+. ...|.|-|||..
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~---~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR---LLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC---EEEEeccccCCCcEEEEEEECcC
Confidence 4455555666666766655 567999999987766532 2111 123555432 44332 335789999998
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCcEEE
Q 013545 179 SGAISQTLSGHRDGIMTVEWSTSSEWILV 207 (441)
Q Consensus 179 ~~~~~~~l~~h~~~v~~v~fsp~~~~~l~ 207 (441)
+-+.+.++..|.-..--+.+.|+++.+++
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvV 115 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVV 115 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEE
Confidence 55667788888777778889999976543
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.42 E-value=0.068 Score=55.65 Aligned_cols=99 Identities=21% Similarity=0.274 Sum_probs=67.9
Q ss_pred CCEEEEEeCCCcEEEEECCCC-e-EEE----EEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee-eecC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCT-R-VVM----NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSG 188 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~ 188 (441)
....+.|=.+..+..||.+-. . ++. .+.......+++.+. .-.||+|+.+|.||+||- .|+..+ .|++
T Consensus 542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~----~G~iavgs~~G~IRLyd~-~g~~AKT~lp~ 616 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE----DGYIAVGSNKGDIRLYDR-LGKRAKTALPG 616 (794)
T ss_pred CCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC----CceEEEEeCCCcEEeecc-cchhhhhcCCC
Confidence 345667778889999998743 2 221 111111122222222 236999999999999994 454444 4667
Q ss_pred CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
-..+|..|..+.||+|+|+|| +..+-|.|+.
T Consensus 617 lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 617 LGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred CCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 789999999999999988876 6789999863
No 339
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.31 E-value=2.1 Score=46.13 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=45.9
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
+.|.++.|- .+...+.-+..+|.|.+=|.++......+ .-..+|.++.|+| |.+.++-..
T Consensus 69 ~~i~s~~fl-~d~~~i~v~~~~G~iilvd~et~~~eivg------------------~vd~GI~aaswS~-Dee~l~liT 128 (1265)
T KOG1920|consen 69 DEIVSVQFL-ADTNSICVITALGDIILVDPETLELEIVG------------------NVDNGISAASWSP-DEELLALIT 128 (1265)
T ss_pred cceEEEEEe-cccceEEEEecCCcEEEEcccccceeeee------------------eccCceEEEeecC-CCcEEEEEe
Confidence 589999986 45556777788888888787654321100 1234688888887 788888777
Q ss_pred CCCcEEE
Q 013545 124 YDHYVKV 130 (441)
Q Consensus 124 ~D~~i~i 130 (441)
.++++-+
T Consensus 129 ~~~tll~ 135 (1265)
T KOG1920|consen 129 GRQTLLF 135 (1265)
T ss_pred CCcEEEE
Confidence 7777765
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=1.2 Score=43.15 Aligned_cols=222 Identities=17% Similarity=0.126 Sum_probs=136.9
Q ss_pred EEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEe--CCCcEEEEECCCCceeeee
Q 013545 109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGAISQTL 186 (441)
Q Consensus 109 ~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s--~d~~I~vwdl~~~~~~~~l 186 (441)
+..++......++...+..|.+.|..+.+.+...........+.+.++.. .+.++-. .++.+.+.|-.+++.+...
T Consensus 79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~--~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGK--YVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCC--EEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 45555444467777778999999988888877776655556667777543 2333333 3789999999999887775
Q ss_pred cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545 187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA 266 (441)
Q Consensus 187 ~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (441)
.--..+ ..+++.|++..++++-..++.|.+.|.......+ - ....
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-~~~~-------------------------------- 201 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G-SVGS-------------------------------- 201 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c-cccc--------------------------------
Confidence 433333 8999999999777777788999999965432110 0 0000
Q ss_pred CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC---CcEEEeeCCCCCceeeee
Q 013545 267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD---SRIRLWDVESGRNTLVNF 343 (441)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D---~~i~~wd~~~~~~~~~~~ 343 (441)
...-......+.++|+|.++...-.. +++...|..++.......
T Consensus 202 ---------------------------------~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 202 ---------------------------------LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred ---------------------------------ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 00000123457899999865443332 588888888765321101
Q ss_pred eeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeeccccc---ceEEEEEcCCC
Q 013545 344 ETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYE---YVNCCCFSSQD 403 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~---~v~~v~fspd~ 403 (441)
. .... .+......|++..+++... ..+.+.|-.+......+..... .+..+++.+..
T Consensus 249 ~--~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 249 P--VGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred c--cccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 0 0011 3556788899988877633 5677777766665554433332 35566666543
No 341
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.27 E-value=1 Score=42.39 Aligned_cols=93 Identities=12% Similarity=0.209 Sum_probs=56.3
Q ss_pred cEEEEECCCCeEEEEEecC--CeeEEEeeccCCC----CccEEEEEeC---------C-CcEEEEECCCC----ceeeee
Q 013545 127 YVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAA----SHMLIAAGTE---------D-VQVRLCDIASG----AISQTL 186 (441)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~las~s~---------d-~~I~vwdl~~~----~~~~~l 186 (441)
.|++.|..+.+.+..+.++ ..+.++....... ...++++|+. . |.|.++++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5788888887777666653 3344444333222 2456776643 2 78999999884 122222
Q ss_pred --cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545 187 --SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (441)
Q Consensus 187 --~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~ 223 (441)
....++|.++.-. ++ +++++ ..+.|.+|++...
T Consensus 83 ~~~~~~g~V~ai~~~-~~-~lv~~--~g~~l~v~~l~~~ 117 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NG-RLVVA--VGNKLYVYDLDNS 117 (321)
T ss_dssp EEEEESS-EEEEEEE-TT-EEEEE--ETTEEEEEEEETT
T ss_pred EEEeecCcceEhhhh-CC-EEEEe--ecCEEEEEEccCc
Confidence 2457889998876 33 34433 3589999998754
No 342
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.26 E-value=1 Score=42.07 Aligned_cols=103 Identities=19% Similarity=0.194 Sum_probs=66.8
Q ss_pred cCeEEEEEccCCCEEE-EeecCCcEEEeeCCC--CCcee-eeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEc
Q 013545 305 GAVTGLKVTEDGMYLL-SAGSDSRIRLWDVES--GRNTL-VNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDI 378 (441)
Q Consensus 305 ~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~ 378 (441)
.--++|+||||++.|. +=+..++|.-|++.. +.... ..+.......+.+--++...++.+.+.+.. ..+..|+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 3457899999997654 446668898888763 21100 011111223355556677778887755444 37899998
Q ss_pred cCCceEeeecccccceEEEEEcC-CCCeEEE
Q 013545 379 WSGKTCLTFRGHYEYVNCCCFSS-QDQELYT 408 (441)
Q Consensus 379 ~~~~~~~~l~gh~~~v~~v~fsp-d~~~l~s 408 (441)
. |+++.++.-....+++++|-- +.+.|+.
T Consensus 243 d-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 243 D-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred C-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 8 898888887777889999874 4455543
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.17 E-value=0.86 Score=40.44 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=79.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~ 195 (441)
..+++.||..+.+.--|..+|++...-.+...+...++.. + ..++.|...+.+.+.+.++|.....+.....--..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv---g-dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV---G-DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE---C-CEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 4578899999999999999999876655665554444432 1 24778889999999999999776655432221123
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~ 230 (441)
....+++. ++..|+.|+....-|.++.+|+...+
T Consensus 99 a~~d~~~g-lIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 99 AQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred eEEcCCCc-eEEEecCCCcEEEecccccceEEecc
Confidence 34456665 67899999999999999988876543
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.17 E-value=0.55 Score=45.97 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=36.9
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEc
Q 013545 170 VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220 (441)
Q Consensus 170 ~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~ 220 (441)
..+.++|+++++....+. ..+.-..-+|+|+|+.++++...||...||=+
T Consensus 218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 469999999987544433 22333467899999999999999998777744
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.12 E-value=0.28 Score=48.16 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=53.4
Q ss_pred CeEEEEEccCCCEEEEeecCCcEEEe-eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceE
Q 013545 306 AVTGLKVTEDGMYLLSAGSDSRIRLW-DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTC 384 (441)
Q Consensus 306 ~v~~l~~s~dg~~l~sgs~D~~i~~w-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~ 384 (441)
.-...+|++.++ +|+-...++|.++ ++..... .....+....-.+. |.++...+...+.+||..+++.+
T Consensus 70 ~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~-------k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i 139 (443)
T PF04053_consen 70 SGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVV-------KSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLI 139 (443)
T ss_dssp E-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT------------SS-EEEEE---SSSEEEEETTEEEEE-TTT--EE
T ss_pred ceeEEEEecCcc-EEEEECCCeEEEEEcCccccc-------eEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHccee
Confidence 345678888555 5556668889996 4432110 00111111111122 66666666667999999999998
Q ss_pred eeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 385 LTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 385 ~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
..+.-. +|..|.||++|.+++-.+.| ++.|.+
T Consensus 140 ~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 140 RRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp EEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred eEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 888744 38999999999998877655 555554
No 346
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.10 E-value=1.4 Score=42.05 Aligned_cols=153 Identities=12% Similarity=0.144 Sum_probs=66.9
Q ss_pred EccCCCCcEEEEeeCCCcEEEE--ECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCc
Q 013545 50 QVDLTEERYLLSGASDSSVAVY--DVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHY 127 (441)
Q Consensus 50 ~~s~~~~~~l~s~s~Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~ 127 (441)
+|.+++.++|.++..||.-.+| |+.+++..+ +.+. .+.... ....++ +...++-.....+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q------------LTdg----~g~~~~-g~~~s~-~~~~~~Yv~~~~~ 103 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ------------LTDG----PGDNTF-GGFLSP-DDRALYYVKNGRS 103 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------------S----S-B-TT-T-EE-T-TSSEEEEEETTTE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE------------CccC----CCCCcc-ceEEec-CCCeEEEEECCCe
Confidence 4554334566666668876666 666553211 0110 011111 123334 3455554555678
Q ss_pred EEEEECCCCeEEEEEecCCeeE-EEeeccCCCCccEEEEE----------------------eCCCcEEEEECCCCceee
Q 013545 128 VKVWDTNCTRVVMNFKMPGKVY-RTAMSPLAASHMLIAAG----------------------TEDVQVRLCDIASGAISQ 184 (441)
Q Consensus 128 i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~las~----------------------s~d~~I~vwdl~~~~~~~ 184 (441)
|+--|+.+.+....+..+.... ...+...+... .++.. -....|..-|+++|+...
T Consensus 104 l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 104 LRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp EEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred EEEEECCcCcEEEEEECCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 8888988877655555443221 22332222211 11111 111235666888887544
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEeec---CC-cEEEEEcCC
Q 013545 185 TLSGHRDGIMTVEWSTSSEWILVTGGC---DG-AIRFWDIRR 222 (441)
Q Consensus 185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~---Dg-~I~iWD~~~ 222 (441)
.+. -...+.-+.|+|..+.+++=|.+ |. .-|||=+++
T Consensus 183 v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 183 VFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp EEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred EEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 443 34556678899988766554442 33 358887654
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.02 E-value=0.67 Score=45.31 Aligned_cols=48 Identities=21% Similarity=0.492 Sum_probs=35.9
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 171 ~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
.|++|+.. |+++..+.--.+.+.++.|..+.+ |+.-..||.+++||+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE--LVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe--EEEEEcCCEEEEEeCC
Confidence 48899874 555655543338999999998654 4556789999999986
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.94 E-value=0.35 Score=47.33 Aligned_cols=119 Identities=9% Similarity=-0.024 Sum_probs=65.9
Q ss_pred EEEccCCCEEE-EeecCCcEEE--eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--C--ceEEEEccCCc
Q 013545 310 LKVTEDGMYLL-SAGSDSRIRL--WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--T--AVKAFDIWSGK 382 (441)
Q Consensus 310 l~~s~dg~~l~-sgs~D~~i~~--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~wd~~~~~ 382 (441)
-+|+|||+.|+ +...|+...| .|+.+... .. +.-.......-.++|||..++..+. + .+-+.+...+.
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~--~~---Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL--PR---LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCcc--ee---cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 36999998765 5667776555 46665431 11 1111222234567899998877654 2 34445554443
Q ss_pred eEeeecccccceEEEEEcCCCCeEEEeec-CCc--EEEeCCCCCCCCCccCCccC
Q 013545 383 TCLTFRGHYEYVNCCCFSSQDQELYTGGN-DRQ--ILVWCPSRHISDGVDAGPMQ 434 (441)
Q Consensus 383 ~~~~l~gh~~~v~~v~fspd~~~l~s~s~-D~~--i~vW~~~~~~~~~~~~~~~~ 434 (441)
. ..+.-..+.=.+-.+||||++|+-.+. ++. |.+-++.++--.++..++..
T Consensus 318 ~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~ 371 (425)
T COG0823 318 V-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL 371 (425)
T ss_pred e-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc
Confidence 3 322222222237789999999986654 333 66666655543334444433
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.81 E-value=0.25 Score=48.50 Aligned_cols=142 Identities=15% Similarity=0.185 Sum_probs=74.5
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
.-....|.++| ++++++. +.||.-.|+....... . ..+.-...+|.+ .+.+|.-
T Consensus 32 ~~~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~------------k----------~~G~g~~~vw~~--~n~yAv~ 85 (443)
T PF04053_consen 32 EIYPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRN------------K----------AFGSGLSFVWSS--RNRYAVL 85 (443)
T ss_dssp SS--SEEEE-T-TSSEEEE-EETTEEEEEETTTTEE------------E----------EEEE-SEEEE-T--SSEEEEE
T ss_pred CcCCeeEEECC-CCCEEEE-EcCCEEEEEEccCCcc------------c----------ccCceeEEEEec--CccEEEE
Confidence 34567899997 5776655 7889988887432211 0 111223456765 4468888
Q ss_pred eCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~ 202 (441)
....+|+|+.--.......++.+..+..+-. +.+|+..+. +.|.+||.++++.++.+.-. +|..|.|++++
T Consensus 86 ~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~------G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g 156 (443)
T PF04053_consen 86 ESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG------GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDG 156 (443)
T ss_dssp -TTS-EEEEETTEE-TT-----SS-EEEEE-------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTS
T ss_pred ECCCeEEEEEcCccccceEEcCCcccceEEc------CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCC
Confidence 7789999974322222223343332222211 235555543 47999999999999888643 38999999998
Q ss_pred CcEEEEeecCCcEEEEEcC
Q 013545 203 EWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 203 ~~~l~s~s~Dg~I~iWD~~ 221 (441)
+.+. -.+ +.++.|++..
T Consensus 157 ~~va-l~t-~~~i~il~~~ 173 (443)
T PF04053_consen 157 ELVA-LVT-KDSIYILKYN 173 (443)
T ss_dssp SEEE-EE--S-SEEEEEE-
T ss_pred CEEE-EEe-CCeEEEEEec
Confidence 8543 333 5578887743
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.81 E-value=1.1 Score=42.81 Aligned_cols=91 Identities=22% Similarity=0.220 Sum_probs=53.6
Q ss_pred CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee-eecC-------C--------
Q 013545 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSG-------H-------- 189 (441)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~-------h-------- 189 (441)
+.+-++|+++++...............++|++. .+|-.. ++.|.+.++.++...+ +..| -
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~---~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGK---YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSST---EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCC---eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 468899999877544332234566777888743 444443 6789999998875443 2222 0
Q ss_pred -CCCeEEEEEecCCCcEEEEeecCCcEEEEEc
Q 013545 190 -RDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220 (441)
Q Consensus 190 -~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~ 220 (441)
-+.-.++-|||++++++..--.+..|+.+.+
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 1123568899999986555555666766654
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.58 E-value=2.5 Score=41.06 Aligned_cols=173 Identities=14% Similarity=0.148 Sum_probs=87.8
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR 264 (441)
Q Consensus 185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (441)
.+....++|++++.|.-| +++.|..+|.+.|-|+|....+..-..... .
T Consensus 81 l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~------------~----------------- 129 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRES------------F----------------- 129 (395)
T ss_dssp EE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG-------------------------------
T ss_pred heeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecccccc------------c-----------------
Confidence 345568999999999776 678899999999999986543322100000 0
Q ss_pred cCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc-----cCC---CEEEEeecCCcEEEeeCCC-
Q 013545 265 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT-----EDG---MYLLSAGSDSRIRLWDVES- 335 (441)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-----~dg---~~l~sgs~D~~i~~wd~~~- 335 (441)
........|+++.|+ .|+ -.+..|+..|.+.+|.+-.
T Consensus 130 ----------------------------------~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 130 ----------------------------------LSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp ----------------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred ----------------------------------cccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 000112234555554 233 3577888889888887652
Q ss_pred CCcee-eeeeeEE-eccCcceEEE-ee---------------------CCCcEEEEeCCCceEEEEccCCceEeeecccc
Q 013545 336 GRNTL-VNFETVR-LQTSKPIQLA-TT---------------------QDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY 391 (441)
Q Consensus 336 ~~~~~-~~~~~~~-~~~~~~~~~~-~~---------------------~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~ 391 (441)
..... ..+.... ...+....+. +. ....++++.+...+|++...+.+..+......
T Consensus 176 ~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~ 255 (395)
T PF08596_consen 176 SNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDP 255 (395)
T ss_dssp GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-
T ss_pred CCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccc
Confidence 11111 1122211 1112211111 11 11235556667889999998887665444332
Q ss_pred cceEEEEEc-----CCCCeEEEeecCCcEEEeCCCC
Q 013545 392 EYVNCCCFS-----SQDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 392 ~~v~~v~fs-----pd~~~l~s~s~D~~i~vW~~~~ 422 (441)
-....+.+- ..+..|+.--.||.|+++.++.
T Consensus 256 ~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 256 FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred cccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 233444552 3466688888999999998875
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.50 E-value=0.035 Score=56.51 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=57.9
Q ss_pred eEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEee
Q 013545 307 VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLT 386 (441)
Q Consensus 307 v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~ 386 (441)
+++++|+|..-.|+.|-.-|.+.+|...+.+ ++++
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-----~htv---------------------------------------- 96 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-----THTV---------------------------------------- 96 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCce-----eeee----------------------------------------
Confidence 6779999999999999999999999876533 1221
Q ss_pred ecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 387 FRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 387 l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
...|+.+|..+.|||+|..|+|+..=|.+.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 13488999999999999999999999999999765
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=3 Score=40.37 Aligned_cols=191 Identities=13% Similarity=0.158 Sum_probs=123.0
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeeec-CCCCCeEEEEEecCCCcEEEEee--cCCcEEEEEcCCCceeeEeccCCcccc
Q 013545 161 MLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGG--CDGAIRFWDIRRAGCFRVLDQSQSQLG 237 (441)
Q Consensus 161 ~~las~s~d~~I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s--~Dg~I~iWD~~~~~~~~~~~~~~~~~~ 237 (441)
...+....++.|.+.|+++........ |. ....++++|+++.+.++-. .++++.+-|..+++.....
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~-------- 156 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI-------- 156 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE--------
Confidence 355555557889999988877665543 33 4578999999987776655 3677777776554322211
Q ss_pred CCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC
Q 013545 238 RRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM 317 (441)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 317 (441)
..+. .+ ..++++|+|.
T Consensus 157 --------------------------------------------------------------~vG~-~P-~~~a~~p~g~ 172 (381)
T COG3391 157 --------------------------------------------------------------PVGN-TP-TGVAVDPDGN 172 (381)
T ss_pred --------------------------------------------------------------ecCC-Cc-ceEEECCCCC
Confidence 0000 12 6789999999
Q ss_pred EE-EEeecCCcEEEeeCCCCCceeeeeee-EEeccCcceEEEeeCCCcEEEEeCCC----ceEEEEccCCceEee-eccc
Q 013545 318 YL-LSAGSDSRIRLWDVESGRNTLVNFET-VRLQTSKPIQLATTQDPAVVFVPCMT----AVKAFDIWSGKTCLT-FRGH 390 (441)
Q Consensus 318 ~l-~sgs~D~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~wd~~~~~~~~~-l~gh 390 (441)
.+ ++-..+++|.+.|..+..... .... .......+..+.+.+++..+++.... .+-..|..++..... +..-
T Consensus 173 ~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~ 251 (381)
T COG3391 173 KVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG 251 (381)
T ss_pred eEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc
Confidence 55 445688999999977643211 1100 11223456778899999988877553 566777777766554 2211
Q ss_pred ccceEEEEEcCCCCeEEEeec-CCcEEEeCCCCCCCC
Q 013545 391 YEYVNCCCFSSQDQELYTGGN-DRQILVWCPSRHISD 426 (441)
Q Consensus 391 ~~~v~~v~fspd~~~l~s~s~-D~~i~vW~~~~~~~~ 426 (441)
......++++|+|+.+..... .+.+.+-+..+..+.
T Consensus 252 ~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 252 SGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred cCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 114567899999999887744 477888887776654
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.098 Score=51.70 Aligned_cols=77 Identities=22% Similarity=0.321 Sum_probs=62.2
Q ss_pred CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE-EEEEecCCCcEEEEeecCCcEEEEEcCCCc
Q 013545 146 GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM-TVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224 (441)
Q Consensus 146 ~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~-~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~ 224 (441)
..+..+.+.|. ..++|.+..+|.|-+..++ ...+.+++-|..+++ +++|.|||+ +||.|=.||+|++-|+.++.
T Consensus 21 ~~i~~~ewnP~---~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPK---MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCc---cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCC
Confidence 34555666664 3489999999999999988 667788887777777 999999998 68889999999999999876
Q ss_pred eee
Q 013545 225 CFR 227 (441)
Q Consensus 225 ~~~ 227 (441)
.+.
T Consensus 96 ~l~ 98 (665)
T KOG4640|consen 96 RLV 98 (665)
T ss_pred cee
Confidence 544
No 355
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.21 E-value=0.089 Score=52.64 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=73.5
Q ss_pred EEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCC-ceEEEEccCCce---Ee
Q 013545 310 LKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKT---CL 385 (441)
Q Consensus 310 l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~wd~~~~~~---~~ 385 (441)
-+++..+++++-|+.-|.+++|+-..+.......+ ...........+++..+++.++.. .|-++.+.++.. ..
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~---~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE---GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhccccc---CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 35677889999999999999999776653221111 122333445566666666666654 445554433211 11
Q ss_pred ---eecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545 386 ---TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 386 ---~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~ 422 (441)
.-..|...|+|++||+|+..+++|..-|+|-.-.+++
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1123778899999999999999999999988877766
No 356
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.10 E-value=0.007 Score=59.50 Aligned_cols=155 Identities=18% Similarity=0.293 Sum_probs=95.4
Q ss_pred CceeEEEccCCCC-cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 44 GSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 44 ~~V~~l~~s~~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
-.+.|++...... ..++.|..+|.|-+=.+..... +- .....+|....++++|.+.|.+.||.|
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-----------Ss----~E~tp~~ar~Ct~lAwneLDtn~LAag 121 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-----------SS----AEVTPGYARPCTSLAWNELDTNHLAAG 121 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc-----------cc----ceecccccccccccccccccHHHHHhh
Confidence 4566776553333 5789999999998877653221 10 111235666788899999888888877
Q ss_pred eC----CCcEEEEECCCC--eEEEEEecCC----eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeeecCCCC
Q 013545 123 SY----DHYVKVWDTNCT--RVVMNFKMPG----KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRD 191 (441)
Q Consensus 123 s~----D~~i~iWd~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~h~~ 191 (441)
=+ |..++|||+.++ .+.....+.+ ... .+++. ....++.+|.....++++|+.... ....+ .+.
T Consensus 122 ldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqn--s~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk 196 (783)
T KOG1008|consen 122 LDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQN--SVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTK 196 (783)
T ss_pred hhhhcccCCccceecccccCCCccccccccccccCcc--ccccc-cCcchhhcccccchhhhhhhhhhhhhhhhh--hhh
Confidence 33 677999999876 2222222221 122 22333 345678888888899999987332 11222 233
Q ss_pred CeEEEEEec-CCCcEEEEeecCCcEEEEEc
Q 013545 192 GIMTVEWST-SSEWILVTGGCDGAIRFWDI 220 (441)
Q Consensus 192 ~v~~v~fsp-~~~~~l~s~s~Dg~I~iWD~ 220 (441)
.|..+...| ... .+++ ..||.|-+||.
T Consensus 197 ~vqG~tVdp~~~n-Y~cs-~~dg~iAiwD~ 224 (783)
T KOG1008|consen 197 YVQGITVDPFSPN-YFCS-NSDGDIAIWDT 224 (783)
T ss_pred hcccceecCCCCC-ceec-cccCceeeccc
Confidence 456677777 344 4555 45999999993
No 357
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=0.57 Score=45.67 Aligned_cols=148 Identities=23% Similarity=0.292 Sum_probs=89.6
Q ss_pred CCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCc-------EEEEeecCCcEEEEEcCCCceeeEec
Q 013545 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW-------ILVTGGCDGAIRFWDIRRAGCFRVLD 230 (441)
Q Consensus 158 ~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~-------~l~s~s~Dg~I~iWD~~~~~~~~~~~ 230 (441)
.++.+|.++.....++-.|++.|+.+...+-|.. |.-+.+.|+.+. .| .|=.|+.|.-||+|-...- .+.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~-kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKN-KLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCcc-eee
Confidence 3456677777777899999999999888776666 677777776542 22 3556889999998832110 000
Q ss_pred cCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEE
Q 013545 231 QSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGL 310 (441)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 310 (441)
..+. +.+ .-.....|.
T Consensus 421 ~~q~----------------------------------------------------kqy------------~~k~nFsc~ 436 (644)
T KOG2395|consen 421 VVQS----------------------------------------------------KQY------------STKNNFSCF 436 (644)
T ss_pred eeec----------------------------------------------------ccc------------cccccccee
Confidence 0000 000 001123444
Q ss_pred EEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEE
Q 013545 311 KVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFD 377 (441)
Q Consensus 311 ~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd 377 (441)
+-..+| +||.||.+|-||+||- .++.....+ +.-...+..+.++.+|..++..|...+-+.+
T Consensus 437 aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAl---PgLG~~I~hVdvtadGKwil~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 437 ATTESG-YIVVGSLKGDIRLYDR-IGRRAKTAL---PGLGDAIKHVDVTADGKWILATCKTYLLLID 498 (644)
T ss_pred eecCCc-eEEEeecCCcEEeehh-hhhhhhhcc---cccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence 444455 8889999999999996 333211111 1112334557778889888888877665555
No 358
>PHA02713 hypothetical protein; Provisional
Probab=94.84 E-value=3 Score=42.71 Aligned_cols=52 Identities=2% Similarity=-0.132 Sum_probs=32.4
Q ss_pred ceEEEEccC---CceEeeecccccceEEEEEcCCCCeEEEeecCC--cEEEeCCCCCCC
Q 013545 372 AVKAFDIWS---GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR--QILVWCPSRHIS 425 (441)
Q Consensus 372 ~~~~wd~~~---~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~--~i~vW~~~~~~~ 425 (441)
.+..||..+ +..+..+.........+++ +|+..+.||.|+ ++..+|+.+++=
T Consensus 481 ~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 481 CIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred eEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 356788765 3444444433333333333 688889999988 777888877653
No 359
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.26 E-value=7.2 Score=39.97 Aligned_cols=94 Identities=20% Similarity=0.287 Sum_probs=50.8
Q ss_pred CCEEEEEeCC------CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC------CcEEEEECCCCcee
Q 013545 116 TGLFVTGSYD------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED------VQVRLCDIASGAIS 183 (441)
Q Consensus 116 ~~~l~sgs~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d------~~I~vwdl~~~~~~ 183 (441)
+.+++.||.+ .++..+|..++.......++.+-........ .+.+.++|+.| ..+..||..+.+-.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 4466777776 4688889887765544444322111111111 23577788877 35788888777532
Q ss_pred e--eecCCCCCeEEEEEecCCCcEEEEeecCCc
Q 013545 184 Q--TLSGHRDGIMTVEWSTSSEWILVTGGCDGA 214 (441)
Q Consensus 184 ~--~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~ 214 (441)
. .+.......-...+ +| .+.|.||.||.
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g-~iYavGG~dg~ 392 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DG-KLYAVGGFDGE 392 (571)
T ss_pred ccCCccCccccceeEEE--CC-EEEEEeccccc
Confidence 2 22222222222222 33 37788998863
No 360
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.23 E-value=0.16 Score=44.05 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=66.2
Q ss_pred CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc-eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccc-c
Q 013545 316 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP-IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHY-E 392 (441)
Q Consensus 316 g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~-~ 392 (441)
+..++.|+.||+|.+|+..-.-...-.+.. ..... ..++...++.+..+++. +.+|.|++.-++.+.....|. .
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s---~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~ 146 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS---GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE 146 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhc---ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence 567888999999999987621100000000 00111 11122223334444443 689999998888887777787 6
Q ss_pred ceEEEEEcCCCCeEEEe--ecCCcEEEeCCCC
Q 013545 393 YVNCCCFSSQDQELYTG--GNDRQILVWCPSR 422 (441)
Q Consensus 393 ~v~~v~fspd~~~l~s~--s~D~~i~vW~~~~ 422 (441)
++.....+..++.|+.+ |.|..++.|++..
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 77777777778888888 8899999998863
No 361
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.19 E-value=2.1 Score=43.39 Aligned_cols=104 Identities=14% Similarity=0.097 Sum_probs=71.7
Q ss_pred EccCCCEEEEeecCCcEEEeeCCC----CCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCce--
Q 013545 312 VTEDGMYLLSAGSDSRIRLWDVES----GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKT-- 383 (441)
Q Consensus 312 ~s~dg~~l~sgs~D~~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~-- 383 (441)
+.++|++... .+++|.+.|..+ +.... ........|--+.++||+.++++.+. ..+.++|+.+.+.
T Consensus 284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~----~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALT----RYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hhhCCCEEEE--CCCEEEEEECCccccCCcceE----EEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 4456766554 367899999887 22211 11122455667889999999998865 5899999877542
Q ss_pred ----------EeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545 384 ----------CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 384 ----------~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~ 422 (441)
..+..--.+ -...+|.++|..+.|---|..|-.|++..
T Consensus 358 ~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 223322222 35678999998888889999999999886
No 362
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.11 E-value=0.14 Score=32.66 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=27.6
Q ss_pred cceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 392 EYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 392 ~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
..|.+++|+|...+||.|..||.|.++..+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 469999999999999999999999999884
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.2 Score=49.67 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=37.4
Q ss_pred CceEeeecccccceE-EEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 381 GKTCLTFRGHYEYVN-CCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 381 ~~~~~~l~gh~~~v~-~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
.+.+-++.-|...+. +++|.|||+.||.|=.||+|++-|++++...
T Consensus 51 ~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 51 WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 344445565666777 9999999999999999999999999987643
No 364
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.03 E-value=0.2 Score=32.00 Aligned_cols=30 Identities=7% Similarity=0.106 Sum_probs=27.5
Q ss_pred cCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545 305 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 305 ~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~ 334 (441)
..|..++|+|....||.|+.||.|.++.+.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 458899999999999999999999999883
No 365
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.60 E-value=9.3 Score=38.79 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=43.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEe------CCCcEEEEECCCCceeeee
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGT------EDVQVRLCDIASGAISQTL 186 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s------~d~~I~vwdl~~~~~~~~l 186 (441)
++.++.++.|+.|.-.|.++|+.+-........ ..+..+|.-.+.. +..+. .++.|..+|+++|+.+..+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEec
Confidence 346777888999999999999988766542211 1111122111222 33332 2688999999999987654
No 366
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.47 E-value=6.8 Score=36.76 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=43.7
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEe-ecCCcEEEEEcCCCceeeEecc
Q 013545 171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTG-GCDGAIRFWDIRRAGCFRVLDQ 231 (441)
Q Consensus 171 ~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~-s~Dg~I~iWD~~~~~~~~~~~~ 231 (441)
.|.++|+++++.+..+.- ..++.+|..+.+.+-+|.+. ..++.+.+||..+++..+..+.
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 588999999999988863 23477899998877556544 4589999999999988877653
No 367
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=0.37 Score=50.80 Aligned_cols=69 Identities=23% Similarity=0.414 Sum_probs=50.7
Q ss_pred EEEEEeCCCcEEEEECCCCce-eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEecc
Q 013545 162 LIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231 (441)
Q Consensus 162 ~las~s~d~~I~vwdl~~~~~-~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~ 231 (441)
.++.|++.|.+-..|....-. ...=..-.++|++++|+.+|. +++.|-.+|.|.+||+..++.++.+..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeee
Confidence 577788888888888755311 111112357899999999987 567888999999999998877766644
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.83 E-value=5.7 Score=37.10 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=45.7
Q ss_pred ceEEEeeCCCcEEEEeCC-----C-----ceEEEEcc-CCceEeeecccccceEEEEEcCCCCeEEEeec-CCcEEEeCC
Q 013545 353 PIQLATTQDPAVVFVPCM-----T-----AVKAFDIW-SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN-DRQILVWCP 420 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~-----~-----~~~~wd~~-~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~-D~~i~vW~~ 420 (441)
+....+.++|.+.+.... . .-.+|.+. .+.....+..|-..-+.|+||||++.|+.+.. -+.|..++.
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 344556667766665433 1 22566665 67777777777777899999999988876644 356666655
Q ss_pred C
Q 013545 421 S 421 (441)
Q Consensus 421 ~ 421 (441)
.
T Consensus 193 d 193 (307)
T COG3386 193 D 193 (307)
T ss_pred C
Confidence 4
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.77 E-value=7.1 Score=36.74 Aligned_cols=137 Identities=12% Similarity=0.205 Sum_probs=77.6
Q ss_pred CcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe-EEEEEec
Q 013545 66 SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-VVMNFKM 144 (441)
Q Consensus 66 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~-~~~~~~~ 144 (441)
|.|.++++.+... ....+-.+ +.....++|.++..+ ++ +|+.+. .++|.+|++...+ ......+
T Consensus 62 Gri~v~~i~~~~~--------~~~~l~~i---~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~ 126 (321)
T PF03178_consen 62 GRILVFEISESPE--------NNFKLKLI---HSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFY 126 (321)
T ss_dssp EEEEEEEECSS-------------EEEEE---EEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE
T ss_pred cEEEEEEEEcccc--------cceEEEEE---EEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCcccchhhhee
Confidence 8899999876300 00011111 112346778888877 34 444443 4799999998777 5544444
Q ss_pred CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-Cceeeee-c-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 145 PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTL-S-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~l-~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
......+.+.... .+++.|.....+.++..+. +..+..+ + ...-.++++.|.++++ .++.+..+|.+.++...
T Consensus 127 ~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 127 DSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-
T ss_pred cceEEEEEEeccc---cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEEC
Confidence 3333333333322 3677887777788775433 2212222 2 2355688999987765 56788999999998764
No 370
>PHA02713 hypothetical protein; Provisional
Probab=92.17 E-value=6.1 Score=40.47 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=18.7
Q ss_pred CCCEEEEeecCC--cEEEeeCCCCCc
Q 013545 315 DGMYLLSAGSDS--RIRLWDVESGRN 338 (441)
Q Consensus 315 dg~~l~sgs~D~--~i~~wd~~~~~~ 338 (441)
+|+..+.||.|+ ++..||+.+.+-
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccc
Confidence 677888898888 788888887653
No 371
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.10 E-value=8.5 Score=34.42 Aligned_cols=71 Identities=17% Similarity=0.073 Sum_probs=53.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG 188 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~ 188 (441)
+++++-|...+.+-+-++++|.....+...+.+-.-+.. ..+..++..|+.|+.....|.++..++...+-
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~--d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC--DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE--cCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 668999999999999999999888777665544222211 12345888999999999999999888766553
No 372
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=91.82 E-value=9.5 Score=34.38 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=25.8
Q ss_pred eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEc
Q 013545 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220 (441)
Q Consensus 184 ~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~ 220 (441)
+.+.+-...++.++|.|+.+.+++.....+.|.-.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~ 51 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL 51 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC
Confidence 4566667779999999997777777777777776665
No 373
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.15 E-value=2.7 Score=40.62 Aligned_cols=99 Identities=12% Similarity=0.162 Sum_probs=52.9
Q ss_pred CCcEEEEECCCCeEEEEEecCC---eeEEEeeccCCCCccEEEEEeCCCcEEEEEC-CCCcee----eeecC--------
Q 013545 125 DHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-ASGAIS----QTLSG-------- 188 (441)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~las~s~d~~I~vwdl-~~~~~~----~~l~~-------- 188 (441)
-+++.+||.++.+.++++.+.. ....+.+.++.....-++.+-..++|..|-- +.++-. -.+..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 3789999999999999998853 2334445444333333333333445555543 444311 11111
Q ss_pred ---------CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545 189 ---------HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (441)
Q Consensus 189 ---------h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~ 223 (441)
-..-|+.|..|.|++++.+++=.+|.||.||+...
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 13457899999999988888888999999999754
No 374
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=0.9 Score=48.11 Aligned_cols=98 Identities=22% Similarity=0.306 Sum_probs=65.9
Q ss_pred EEEEEeCCCcEEEEECCCCeE--EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545 118 LFVTGSYDHYVKVWDTNCTRV--VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~ 195 (441)
.++.|+.-|.+-..|....-. .......+++.+++++.++ .+++.|-.+|.|.+||..+++.++.+..|..++++
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg---~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG---SLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC---ceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 566777777777766643211 2222345678888888754 47888999999999999999999988877766665
Q ss_pred EEEe---cCCCcEEEEeecCCcEEEEEcC
Q 013545 196 VEWS---TSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 196 v~fs---p~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
+-++ .++. .+.++..-|. +|.+-
T Consensus 178 vi~v~~t~~nS-~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNS-KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence 4433 2333 4566655554 77653
No 375
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.04 E-value=0.98 Score=28.06 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=27.7
Q ss_pred cceeEEEEeeCCC--CEEEEEeCCCcEEEEECCCC
Q 013545 104 YAISSAIWYPVDT--GLFVTGSYDHYVKVWDTNCT 136 (441)
Q Consensus 104 ~~V~~~~~~~~~~--~~l~sgs~D~~i~iWd~~~~ 136 (441)
++|.++.|+|..+ ++|+-+-.-+.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3678899998666 89999988999999999853
No 376
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=90.86 E-value=19 Score=36.16 Aligned_cols=107 Identities=13% Similarity=0.112 Sum_probs=63.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCCee-EE---EeeccCCC-CccEEEEEeCCCcEEEEECCCCceeeeecCCC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV-YR---TAMSPLAA-SHMLIAAGTEDVQVRLCDIASGAISQTLSGHR 190 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~-~~---~~~~~~~~-~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~ 190 (441)
++.++.++.|+.|.-.|.++++.+-.+...... .. +...+... +...+..++.++.|.-+|.++|+.+..+....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 346777778899999999999987766543220 00 00000000 11356667789999999999999887664322
Q ss_pred CC-----e-EEEEEecCCCcEEEEee---------cCCcEEEEEcCCCce
Q 013545 191 DG-----I-MTVEWSTSSEWILVTGG---------CDGAIRFWDIRRAGC 225 (441)
Q Consensus 191 ~~-----v-~~v~fsp~~~~~l~s~s---------~Dg~I~iWD~~~~~~ 225 (441)
.. + .+..+.. + . ++.++ .++.+.-.|..+++.
T Consensus 141 ~~~~~~~i~ssP~v~~-~-~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 141 QVPPGYTMTGAPTIVK-K-L-VIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CcCcceEecCCCEEEC-C-E-EEEeccccccccCCCCcEEEEEECCCCce
Confidence 10 1 1222222 2 2 33333 357788888887754
No 377
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.31 E-value=1.2 Score=26.94 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=19.8
Q ss_pred cccceEEEEEcCCCCeEE-EeecC--CcEEEe
Q 013545 390 HYEYVNCCCFSSQDQELY-TGGND--RQILVW 418 (441)
Q Consensus 390 h~~~v~~v~fspd~~~l~-s~s~D--~~i~vW 418 (441)
..+.-...+|||||++|+ +...+ +.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344577889999999988 44455 666665
No 378
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=89.88 E-value=1.2 Score=42.65 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=61.0
Q ss_pred ccCCCEEEEe---------ecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCce
Q 013545 313 TEDGMYLLSA---------GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKT 383 (441)
Q Consensus 313 s~dg~~l~sg---------s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~ 383 (441)
|||+++++-. +..+.+.++|+++++... +.. .........++|++..++......+.+.+..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--l~~---~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--LTP---PPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--SS----EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--CcC---CccccccceeecCCCeeEEEecCceEEEECCCCCe
Confidence 5677766542 234568899999865321 111 13345567889999998888888888888766643
Q ss_pred Ee-eecc-------c---------ccceEEEEEcCCCCeEEEeecC-CcEEEeCC
Q 013545 384 CL-TFRG-------H---------YEYVNCCCFSSQDQELYTGGND-RQILVWCP 420 (441)
Q Consensus 384 ~~-~l~g-------h---------~~~v~~v~fspd~~~l~s~s~D-~~i~vW~~ 420 (441)
.. +..| - -+.-..+-|||||++||....| ..|+.+.+
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 32 2222 1 1123568899999999976554 44555543
No 379
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.87 E-value=0.97 Score=43.51 Aligned_cols=98 Identities=15% Similarity=0.256 Sum_probs=47.9
Q ss_pred ecCCcEEEeeCCCCCceeeeeeeEEeccCc--c--eEEEeeCCCcEEEEeCCCceEEEEccC---C----ceEeeec---
Q 013545 323 GSDSRIRLWDVESGRNTLVNFETVRLQTSK--P--IQLATTQDPAVVFVPCMTAVKAFDIWS---G----KTCLTFR--- 388 (441)
Q Consensus 323 s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~wd~~~---~----~~~~~l~--- 388 (441)
-...++.+||+.+.+... ++.+.... + ++.+..|+...-|++|..+-.+|-... + +.+.++.
T Consensus 219 ~yG~~l~vWD~~~r~~~Q----~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQ----TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp -S--EEEEEETTTTEEEE----EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred cccCeEEEEECCCCcEee----EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 345689999999876422 33332211 2 345555666777777665544443311 1 2222221
Q ss_pred --------------ccccceEEEEEcCCCCeEEE-eecCCcEEEeCCCCCC
Q 013545 389 --------------GHYEYVNCCCFSSQDQELYT-GGNDRQILVWCPSRHI 424 (441)
Q Consensus 389 --------------gh~~~v~~v~fspd~~~l~s-~s~D~~i~vW~~~~~~ 424 (441)
.-..-|+++.+|.|+++|.- +=.+|.||.+|++...
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 11345899999999999884 4458999999998644
No 380
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=89.63 E-value=16 Score=33.30 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=37.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~ 182 (441)
.++.|+.|..+| +.+++...............+.++...+.. +.+++- .|+.+.++++..-..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~--~~llvL--sd~~l~~~~L~~l~~ 68 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPEL--NLLLVL--SDGQLYVYDLDSLEP 68 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEeccc--CEEEEE--cCCccEEEEchhhcc
Confidence 467888898888 888888332222222222236666665532 223333 359999999976543
No 381
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.57 E-value=1.2 Score=27.70 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=24.4
Q ss_pred CCeEEEEEecCCC--cEEEEeecCCcEEEEEcCC
Q 013545 191 DGIMTVEWSTSSE--WILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 191 ~~v~~v~fsp~~~--~~l~s~s~Dg~I~iWD~~~ 222 (441)
+.|.++.|+|... .+|+-+-.-|.|.++|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998643 3666655568999999985
No 382
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.49 E-value=4.7 Score=35.45 Aligned_cols=106 Identities=17% Similarity=0.250 Sum_probs=63.8
Q ss_pred eEEEEEccCCCE-EEEeecCCcEEEee--CCCCCce--eeeeeeEE---eccCcceEEEeeCCCcEEEE-eCCCceEEEE
Q 013545 307 VTGLKVTEDGMY-LLSAGSDSRIRLWD--VESGRNT--LVNFETVR---LQTSKPIQLATTQDPAVVFV-PCMTAVKAFD 377 (441)
Q Consensus 307 v~~l~~s~dg~~-l~sgs~D~~i~~wd--~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~wd 377 (441)
-+.|+|+.|.+. ...-+.+-+|.-|| ..++... ...+.... ..+..|--+++..+|.+.++ -..+++.-+|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 356778877654 45567788887787 5555321 11111111 11111222333445544333 2446788889
Q ss_pred ccCCceEeeecccccceEEEEEcCC--CCeEEEeecC
Q 013545 378 IWSGKTCLTFRGHYEYVNCCCFSSQ--DQELYTGGND 412 (441)
Q Consensus 378 ~~~~~~~~~l~gh~~~v~~v~fspd--~~~l~s~s~D 412 (441)
..+|+.+.++.-....|+|++|--- .-+.+|+..+
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhc
Confidence 9999999999888999999999854 3455666554
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.21 E-value=23 Score=34.59 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=24.2
Q ss_pred EEEEEecCCCcEEEEeecCCc----EEEEEcCCCc
Q 013545 194 MTVEWSTSSEWILVTGGCDGA----IRFWDIRRAG 224 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~----I~iWD~~~~~ 224 (441)
....++|++++++++-+..|. ++++|+.+++
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~ 161 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK 161 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc
Confidence 367789999987777666664 9999998764
No 384
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.09 E-value=8.1 Score=37.21 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=55.7
Q ss_pred CeEEEEEccCCCEEEEee-----------cCC-cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCce
Q 013545 306 AVTGLKVTEDGMYLLSAG-----------SDS-RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAV 373 (441)
Q Consensus 306 ~v~~l~~s~dg~~l~sgs-----------~D~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (441)
....|+|.++|+.+++-. ..+ +|.+++-..+................+.-+++.+++ +++++...+
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 356899999999887753 223 777776543321111111111122344556667777 555555555
Q ss_pred EEEEccCC------c--eE-eeecc----cccceEEEEEcCCCCeEEEee
Q 013545 374 KAFDIWSG------K--TC-LTFRG----HYEYVNCCCFSSQDQELYTGG 410 (441)
Q Consensus 374 ~~wd~~~~------~--~~-~~l~g----h~~~v~~v~fspd~~~l~s~s 410 (441)
..+.-..+ + .+ ..+.. +......++|.|||++.++-+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 44422111 1 11 22322 234478999999998888655
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=88.41 E-value=26 Score=36.12 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=40.4
Q ss_pred CcceEEEeeCCCcEEEEeCCCceEE---EEccCCce-E---eee-cccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 351 SKPIQLATTQDPAVVFVPCMTAVKA---FDIWSGKT-C---LTF-RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~---wd~~~~~~-~---~~l-~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
..+..+.+++||..++....+.+.+ .....|.. + ..+ .+-...+.++.|.+++..+ .+..+....+|.+
T Consensus 448 g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 448 GPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred CCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 3466788999999877655555544 33334431 1 112 2223346889999999865 4444554556643
No 386
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.40 E-value=7.4 Score=39.93 Aligned_cols=96 Identities=18% Similarity=0.244 Sum_probs=64.0
Q ss_pred EEeCCCcEEEEECCCCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC-----CC----ceeee--ec
Q 013545 121 TGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-----SG----AISQT--LS 187 (441)
Q Consensus 121 sgs~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~-----~~----~~~~~--l~ 187 (441)
.-+.-.++.|||.+.+.......+ .+.+..+.|.....++.+||+|- .+.|.++.-. .. ..++. +.
T Consensus 46 V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf-~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~ 124 (631)
T PF12234_consen 46 VDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF-PHHVLLYTQLRYDYTNKGPSWAPIRKIDIS 124 (631)
T ss_pred EECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc-CcEEEEEEccchhhhcCCcccceeEEEEee
Confidence 334456799999998886554444 77888999888777777787775 5667776431 11 22332 34
Q ss_pred CCC-CCeEEEEEecCCCcEEEEeecCCcEEEEEc
Q 013545 188 GHR-DGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220 (441)
Q Consensus 188 ~h~-~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~ 220 (441)
.|+ .+|....|.++|. |+.|+ .+.+.++|-
T Consensus 125 ~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 125 SHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFDK 155 (631)
T ss_pred cCCCCCccceeEecCCe--EEEEe-CCEEEEECC
Confidence 555 6788999999985 34333 467888873
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.25 E-value=20 Score=33.34 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=54.0
Q ss_pred cCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEE-ccCCce
Q 013545 305 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFD-IWSGKT 383 (441)
Q Consensus 305 ~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd-~~~~~~ 383 (441)
+.+..+..++||++|+.++...-..-||.-... ... ..+........+.+.+++.+.+++..+.++.=+ ....+.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~--w~~--~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT--WQP--HNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGET 220 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS---EE--EE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCcc--ceE--EccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccc
Confidence 568888999999999988777777788765321 111 112223344567778888877776555555444 111111
Q ss_pred E----eeecccccceEEEEEcCCCCeEEEeecC
Q 013545 384 C----LTFRGHYEYVNCCCFSSQDQELYTGGND 412 (441)
Q Consensus 384 ~----~~l~gh~~~v~~v~fspd~~~l~s~s~D 412 (441)
. ..+..-.-.+.+++|.+++...++|+..
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 1 1111122238999999998888877654
No 388
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.03 E-value=2.5 Score=25.43 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=22.4
Q ss_pred CCCCeEEEEEecCCCcEEEEeecC--CcEEEE
Q 013545 189 HRDGIMTVEWSTSSEWILVTGGCD--GAIRFW 218 (441)
Q Consensus 189 h~~~v~~v~fsp~~~~~l~s~s~D--g~I~iW 218 (441)
....-....|+|||++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445567889999999888887777 777666
No 389
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=87.95 E-value=21 Score=32.53 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=77.7
Q ss_pred CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 013545 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN 134 (441)
Q Consensus 55 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~ 134 (441)
.++.|+-|.++| +.++++...... ..+ -+...|..+...+. -+.|+.-+ |+++.++++.
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~---------~~i---------~~~~~I~ql~vl~~-~~~llvLs-d~~l~~~~L~ 64 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKP---------TRI---------LKLSSITQLSVLPE-LNLLLVLS-DGQLYVYDLD 64 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccc---------eeE---------eecceEEEEEEecc-cCEEEEEc-CCccEEEEch
Confidence 356899998888 899998322211 000 12223666777663 34454443 4999999976
Q ss_pred CCeEEE---------------EEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-----ceeeeecCCCCCeE
Q 013545 135 CTRVVM---------------NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-----AISQTLSGHRDGIM 194 (441)
Q Consensus 135 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-----~~~~~l~~h~~~v~ 194 (441)
.-.... .......+..++......+...|+.+.. ..|.+|..... +..+.+. -.+.+.
T Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~-lp~~~~ 142 (275)
T PF00780_consen 65 SLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEIS-LPDPPS 142 (275)
T ss_pred hhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcccccceeEEEE-cCCCcE
Confidence 533322 1111122222221111223334554443 47888877653 2334443 347789
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCCce
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGC 225 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~ 225 (441)
++.|.++ . ++.|. .+...+.|+.++..
T Consensus 143 ~i~~~~~--~-i~v~~-~~~f~~idl~~~~~ 169 (275)
T PF00780_consen 143 SIAFLGN--K-ICVGT-SKGFYLIDLNTGSP 169 (275)
T ss_pred EEEEeCC--E-EEEEe-CCceEEEecCCCCc
Confidence 9999843 3 34443 45688888876543
No 390
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=87.77 E-value=21 Score=32.32 Aligned_cols=115 Identities=15% Similarity=0.077 Sum_probs=62.1
Q ss_pred eEEEEEccCCCEEEEeecCCcEEEee-CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC----CCceEEEEcc--
Q 013545 307 VTGLKVTEDGMYLLSAGSDSRIRLWD-VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC----MTAVKAFDIW-- 379 (441)
Q Consensus 307 v~~l~~s~dg~~l~sgs~D~~i~~wd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~wd~~-- 379 (441)
++.-.|++++...+....+...+++. ...+............ ...+..+.+++||..++... ...+.+=-+.
T Consensus 68 l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~-~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 68 LTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGL-RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred cccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEeccccc-CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 44557888877766666666666663 2333221111111100 11455788999998877654 3344443332
Q ss_pred -CC------ceEeeecccccceEEEEEcCCCCeEEEeec-CCcEEE-eCCCC
Q 013545 380 -SG------KTCLTFRGHYEYVNCCCFSSQDQELYTGGN-DRQILV-WCPSR 422 (441)
Q Consensus 380 -~~------~~~~~l~gh~~~v~~v~fspd~~~l~s~s~-D~~i~v-W~~~~ 422 (441)
.+ ............+..++|.+++.+++.+.. +..+.. ..+..
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence 22 111222233467999999999988775544 443433 43433
No 391
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=87.02 E-value=17 Score=34.77 Aligned_cols=51 Identities=20% Similarity=0.442 Sum_probs=29.7
Q ss_pred cEEEEECCCCceee---------eecCCCC-CeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 171 QVRLCDIASGAISQ---------TLSGHRD-GIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 171 ~I~vwdl~~~~~~~---------~l~~h~~-~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
.|.+++++.+.... .+.+|.. .=.-+.|+||++++|.++...|...||-+.
T Consensus 321 ~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 321 WIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred EEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 46678888776431 1222221 124688999999999999999999888543
No 392
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.88 E-value=24 Score=32.00 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=66.9
Q ss_pred CCCEEEEEeCCC--cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCC
Q 013545 115 DTGLFVTGSYDH--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG 192 (441)
Q Consensus 115 ~~~~l~sgs~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~ 192 (441)
++.++-|.|.-| .|+.+|+.+++.+....++...+.=.+.... +.+.----.++...+||.++-+.+.+++ ..+.
T Consensus 55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~E 131 (264)
T PF05096_consen 55 DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGE 131 (264)
T ss_dssp TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS
T ss_pred CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEEEEEe-cCCc
Confidence 566777887765 6999999999998888777654433333322 2233344567889999999998887775 3345
Q ss_pred eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceee
Q 013545 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR 227 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~ 227 (441)
=+.++ .+++.+++| .....+.++|..+.+..+
T Consensus 132 GWGLt--~dg~~Li~S-DGS~~L~~~dP~~f~~~~ 163 (264)
T PF05096_consen 132 GWGLT--SDGKRLIMS-DGSSRLYFLDPETFKEVR 163 (264)
T ss_dssp --EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEE
T ss_pred ceEEE--cCCCEEEEE-CCccceEEECCcccceEE
Confidence 57777 355666555 335578888877654443
No 393
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.87 E-value=28 Score=31.81 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=46.3
Q ss_pred CeEEEEEecCCeeEEEeeccCCCCccEEEEEeC-CCcEEEEECCCCceeeeecCCCCCeE--EEEEecCCCcEEEEee--
Q 013545 136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE-DVQVRLCDIASGAISQTLSGHRDGIM--TVEWSTSSEWILVTGG-- 210 (441)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~-d~~I~vwdl~~~~~~~~l~~h~~~v~--~v~fsp~~~~~l~s~s-- 210 (441)
++++....++.....+.++|..+. .++.+-- .-...++|.++.....++...++.-. --.|||+|.++.+|-.
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~r--avafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALPR--AVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred CceeeeeecccccCCeecCCCCcc--eEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 333444444444555666665432 2333322 23567899988876655543222211 2358999997665532
Q ss_pred --cCCcEEEEEcC
Q 013545 211 --CDGAIRFWDIR 221 (441)
Q Consensus 211 --~Dg~I~iWD~~ 221 (441)
.-|.|=+||.+
T Consensus 136 d~~rGViGvYd~r 148 (366)
T COG3490 136 DPNRGVIGVYDAR 148 (366)
T ss_pred CCCCceEEEEecc
Confidence 23568888876
No 394
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.70 E-value=0.45 Score=49.31 Aligned_cols=118 Identities=14% Similarity=0.190 Sum_probs=75.8
Q ss_pred cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECC--CCeEEEE-----Ee-cCCeeEEEeeccCCCCccEEEEEeCCCc
Q 013545 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN--CTRVVMN-----FK-MPGKVYRTAMSPLAASHMLIAAGTEDVQ 171 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~--~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~las~s~d~~ 171 (441)
+|..++|-.+.|-+.+...++ -.-+.+.+||+. .|+.... .. ....+..+.+.|.......+..+-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 466777777777555544444 334788999864 2332111 11 2234556667776655567777778889
Q ss_pred EEEEECCCCceeeeecCCCCCeEEE-----------EEecCCCcEEEEeecCCcEEEEEcC
Q 013545 172 VRLCDIASGAISQTLSGHRDGIMTV-----------EWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 172 I~vwdl~~~~~~~~l~~h~~~v~~v-----------~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
|++....+... ..+++|...+..+ ..+|||. +|+..+.||.+++|-+-
T Consensus 207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeee
Confidence 99888766543 4456677655443 3688887 67888899999998653
No 395
>PHA03098 kelch-like protein; Provisional
Probab=85.59 E-value=45 Score=33.95 Aligned_cols=65 Identities=11% Similarity=0.215 Sum_probs=32.8
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC------CcEEEEECCCCc
Q 013545 115 DTGLFVTGSYD-----HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED------VQVRLCDIASGA 181 (441)
Q Consensus 115 ~~~~l~sgs~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d------~~I~vwdl~~~~ 181 (441)
++.+++.||.+ ..+..||+.+.+-...-+++.+....+.... ++.+.+.|+.+ ..+..||+.+.+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 46677788876 3477788776553322222211111111111 23345555521 358889988764
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=85.35 E-value=19 Score=36.92 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=55.1
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC-----cEEEEECCCCcee
Q 013545 115 DTGLFVTGSYDH------YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-----QVRLCDIASGAIS 183 (441)
Q Consensus 115 ~~~~l~sgs~D~------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~-----~I~vwdl~~~~~~ 183 (441)
++.+.+.||.|+ ++..+|..+.+-...-++...-....... .+..+.+.|+.|+ +|..||.++.+-.
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 677888888764 46778887766543333321111111111 1234667777665 3788998887643
Q ss_pred ee--ecCCCCCeEEEEEecCCCcEEEEeecCC-----cEEEEEcCC
Q 013545 184 QT--LSGHRDGIMTVEWSTSSEWILVTGGCDG-----AIRFWDIRR 222 (441)
Q Consensus 184 ~~--l~~h~~~v~~v~fsp~~~~~l~s~s~Dg-----~I~iWD~~~ 222 (441)
.. .......+..+.. +..+.+.|+.|| +|..||..+
T Consensus 505 ~v~~m~~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 505 MVAPMTSPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred EcccCccccccccEEEE---CCEEEEEecccCccccceeEEcCCCC
Confidence 22 2223333333332 234678888776 355555443
No 397
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=82.92 E-value=22 Score=36.63 Aligned_cols=74 Identities=16% Similarity=0.276 Sum_probs=50.2
Q ss_pred EEeeCCCcEEEEe-CCCceEEEEccCCceEe--eecccccceEEEEEc--CCCCeEEEeecCCcEEEeCCCCCCCCCccC
Q 013545 356 LATTQDPAVVFVP-CMTAVKAFDIWSGKTCL--TFRGHYEYVNCCCFS--SQDQELYTGGNDRQILVWCPSRHISDGVDA 430 (441)
Q Consensus 356 ~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~--~l~gh~~~v~~v~fs--pd~~~l~s~s~D~~i~vW~~~~~~~~~~~~ 430 (441)
+..+.-+...++. ....+.+||...+.+.. .| ...+.|.++.|+ |||+.+++.|-...|.++..-. .+++..
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R--~dy~~~ 111 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR--YDYTNK 111 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc--hhhhcC
Confidence 3333444444443 34689999998876433 33 446779998886 7899999999999999986533 444555
Q ss_pred Cc
Q 013545 431 GP 432 (441)
Q Consensus 431 ~~ 432 (441)
+|
T Consensus 112 ~p 113 (631)
T PF12234_consen 112 GP 113 (631)
T ss_pred Cc
Confidence 54
No 398
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=82.79 E-value=17 Score=37.90 Aligned_cols=114 Identities=13% Similarity=0.147 Sum_probs=70.4
Q ss_pred eeEEEEeeC-CCCEEEEEeCCCcEEEEECCC-------C-------------eEEEEEecCCeeEEEeeccCCCCccEEE
Q 013545 106 ISSAIWYPV-DTGLFVTGSYDHYVKVWDTNC-------T-------------RVVMNFKMPGKVYRTAMSPLAASHMLIA 164 (441)
Q Consensus 106 V~~~~~~~~-~~~~l~sgs~D~~i~iWd~~~-------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~la 164 (441)
|+-+.+... +.++|+.|.+||.|.+|.+++ . ++...+..+.....++++.. ....+||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~-~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDY-KKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEec-CcceEEE
Confidence 444444222 356899999999999996521 0 01233344556677777622 2345777
Q ss_pred EEeCCCcEEEEECCC--Cce-eeeecCCCCCeEEEEEecCC--C---cEEEEeecCCcEEEEEc
Q 013545 165 AGTEDVQVRLCDIAS--GAI-SQTLSGHRDGIMTVEWSTSS--E---WILVTGGCDGAIRFWDI 220 (441)
Q Consensus 165 s~s~d~~I~vwdl~~--~~~-~~~l~~h~~~v~~v~fsp~~--~---~~l~s~s~Dg~I~iWD~ 220 (441)
+++....|.||-... .+. ...-..|...|.+|+|.++. . ..+++++-.|.+-+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 777666666665432 221 11112377789999998875 1 14677888999998887
No 399
>PRK13616 lipoprotein LpqB; Provisional
Probab=82.73 E-value=63 Score=33.39 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=55.6
Q ss_pred cCeEEEEEccCCCEEEEeecCCcEEEe---eCCCCCceeeeeeeEEeccC-cceEEEeeCCCcEEEEeCCCceEEEEc-c
Q 013545 305 GAVTGLKVTEDGMYLLSAGSDSRIRLW---DVESGRNTLVNFETVRLQTS-KPIQLATTQDPAVVFVPCMTAVKAFDI-W 379 (441)
Q Consensus 305 ~~v~~l~~s~dg~~l~sgs~D~~i~~w---d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~wd~-~ 379 (441)
+.|.++.|||||..|+-.. +++|.+= ....+...+.....+..... ....+.+..++.+++........+|.+ .
T Consensus 448 g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~v 526 (591)
T PRK13616 448 GPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNL 526 (591)
T ss_pred CCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEec
Confidence 4589999999999887665 4677763 22333322211111111122 235677888888664433333334443 1
Q ss_pred CCceEeeecc--cccceEEEEEcCCCCeEEEeecCCc
Q 013545 380 SGKTCLTFRG--HYEYVNCCCFSSQDQELYTGGNDRQ 414 (441)
Q Consensus 380 ~~~~~~~l~g--h~~~v~~v~fspd~~~l~s~s~D~~ 414 (441)
.|.....+.+ ...++..|+=+++ .++.+..++.
T Consensus 527 DG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 527 DGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred CCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 2332222233 2567788887763 3444444543
No 400
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=82.24 E-value=53 Score=32.19 Aligned_cols=153 Identities=11% Similarity=0.135 Sum_probs=83.3
Q ss_pred CCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEE---EeeCCCCEEEEEeCCCcEE
Q 013545 53 LTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAI---WYPVDTGLFVTGSYDHYVK 129 (441)
Q Consensus 53 ~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~---~~~~~~~~l~sgs~D~~i~ 129 (441)
+++.+.|+.||..|.++||+...... +.. + + ..+. .-+.+|..+. |.+......+.-=.-+.+-
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~-~~~-~------l-llE~----~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~ 100 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEF-QPE-D------L-LLET----QLKDPILQVECGKFVSGSEDLQLAVLHPRKLS 100 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCC-CCc-c------E-EEEE----ecCCcEEEEEeccccCCCCcceEEEecCCEEE
Confidence 34456899999999999999843321 110 0 0 1111 0112232222 2121122222224455666
Q ss_pred EEECCC--Ce--------E--EEEEecCCeeEEEeeccCCC--CccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545 130 VWDTNC--TR--------V--VMNFKMPGKVYRTAMSPLAA--SHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (441)
Q Consensus 130 iWd~~~--~~--------~--~~~~~~~~~~~~~~~~~~~~--~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~ 195 (441)
+|.+.. +. . +....+....+....-+++. +...+++-+.||.+.+|+-+.-.....+.+ ---.-.
T Consensus 101 vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgP 179 (418)
T PF14727_consen 101 VYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGP 179 (418)
T ss_pred EEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcC
Confidence 666521 11 1 11122233344455555542 246888899999999999877665555554 122235
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEc
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDI 220 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~ 220 (441)
+.|+|..+. |++++.+..+.-|..
T Consensus 180 l~Y~~~tDs-fvt~sss~~l~~Yky 203 (418)
T PF14727_consen 180 LCYCPRTDS-FVTASSSWTLECYKY 203 (418)
T ss_pred eEEeecCCE-EEEecCceeEEEecH
Confidence 677877664 678888888888864
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=81.96 E-value=36 Score=30.74 Aligned_cols=106 Identities=13% Similarity=0.025 Sum_probs=57.0
Q ss_pred CeEEEEEccCCCEEEEee---cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEE-ccC
Q 013545 306 AVTGLKVTEDGMYLLSAG---SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFD-IWS 380 (441)
Q Consensus 306 ~v~~l~~s~dg~~l~sgs---~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd-~~~ 380 (441)
.+.+.++++++..++.-. ...+++++......... . .........+.+++...++... ...+++. ..+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~--~-----~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV--L-----TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee--c-----cCCccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence 477889999999876655 33445555443322111 0 1122334456677666655443 3445553 233
Q ss_pred CceEe-ee--cccccceEEEEEcCCCCeEEEee---cCCcEEEe
Q 013545 381 GKTCL-TF--RGHYEYVNCCCFSSQDQELYTGG---NDRQILVW 418 (441)
Q Consensus 381 ~~~~~-~l--~gh~~~v~~v~fspd~~~l~s~s---~D~~i~vW 418 (441)
+.... .+ .+-.+.|..+++||||..++-.. .++.|.|=
T Consensus 98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va 141 (253)
T PF10647_consen 98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVA 141 (253)
T ss_pred CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEE
Confidence 32211 11 11112799999999999977543 24445444
No 402
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=81.54 E-value=56 Score=32.02 Aligned_cols=30 Identities=10% Similarity=0.313 Sum_probs=26.5
Q ss_pred cCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545 305 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 305 ~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~ 334 (441)
+++..|++||+|++||--..+|++.+.+..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 578999999999999999999999888654
No 403
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.61 E-value=5.1 Score=35.37 Aligned_cols=27 Identities=26% Similarity=0.658 Sum_probs=23.6
Q ss_pred EccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545 312 VTEDGMYLLSAGSDSRIRLWDVESGRN 338 (441)
Q Consensus 312 ~s~dg~~l~sgs~D~~i~~wd~~~~~~ 338 (441)
+..++.+|++-+.+|.+++||+.+++.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~ 44 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKA 44 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCee
Confidence 556788999999999999999998764
No 404
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.55 E-value=41 Score=29.82 Aligned_cols=99 Identities=14% Similarity=0.264 Sum_probs=61.0
Q ss_pred eEEEccCCCCcEEEEeeCCCcEEEEE--CCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545 47 NSLQVDLTEERYLLSGASDSSVAVYD--VQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (441)
Q Consensus 47 ~~l~~s~~~~~~l~s~s~Dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~ 124 (441)
+.|+|+.+.-.+-..-+.+-+|.-|| +.++. +...+.++.+.+..-.+|..+-- +++ ..+|.+.+++-.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~-------~snr~~i~dlrk~~~~e~~~PDG-m~I-D~eG~L~Va~~n 231 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD-------LSNRKVIFDLRKSQPFESLEPDG-MTI-DTEGNLYVATFN 231 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCccc-------ccCcceeEEeccCCCcCCCCCCc-ceE-ccCCcEEEEEec
Confidence 45677754445678888888998888 55543 23334444443321112221111 122 236778888888
Q ss_pred CCcEEEEECCCCeEEEEEecCC-eeEEEeec
Q 013545 125 DHYVKVWDTNCTRVVMNFKMPG-KVYRTAMS 154 (441)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~ 154 (441)
-++|...|+.+|+.+.+++++- ++.+++|-
T Consensus 232 g~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 232 GGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 8999999999999999998873 34444443
No 405
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=79.61 E-value=14 Score=36.38 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=47.0
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 161 ~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
-++|+|+..|.|++||--.-.-...+++-...|..|..+.+|+++|+|| ..++-+=|++
T Consensus 574 GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 4788999999999999644333345778888899999999999988876 4688888876
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=79.57 E-value=60 Score=31.19 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=49.6
Q ss_pred eEEEEEccCCCEEEEeecCCcEEEeeCCCC-----CceeeeeeeEEec----cCcceEEEeeCCCcEEEEeCCC------
Q 013545 307 VTGLKVTEDGMYLLSAGSDSRIRLWDVESG-----RNTLVNFETVRLQ----TSKPIQLATTQDPAVVFVPCMT------ 371 (441)
Q Consensus 307 v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~-----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------ 371 (441)
.+.|++.++| .+++ ..+.-.++.|.... +.. ..+...... ...+..+.+.+|+.+.++.+..
T Consensus 74 p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~-~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 74 VTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGERE-VLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred ccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccE-EEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence 5678898988 5543 34433334354321 111 111111111 1224457778888766554321
Q ss_pred --------------ceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee
Q 013545 372 --------------AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG 410 (441)
Q Consensus 372 --------------~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s 410 (441)
.+-.++...++ +..+.....-.+.++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEcc
Confidence 12223333333 233322234468999999998887644
No 407
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=79.12 E-value=99 Score=33.39 Aligned_cols=56 Identities=9% Similarity=0.114 Sum_probs=34.4
Q ss_pred EEEEEeCCCcEEEEECCCCceeeee-cCCCCCeEEEEEecC--CCc---EEEEeecCCcEEE
Q 013545 162 LIAAGTEDVQVRLCDIASGAISQTL-SGHRDGIMTVEWSTS--SEW---ILVTGGCDGAIRF 217 (441)
Q Consensus 162 ~las~s~d~~I~vwdl~~~~~~~~l-~~h~~~v~~v~fsp~--~~~---~l~s~s~Dg~I~i 217 (441)
.++.++.+..+...++..+.+.... ..-...|.|+.++|- ++. +++.|.++..+.+
T Consensus 501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~ 562 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMI 562 (1096)
T ss_pred EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEE
Confidence 4555566677888888776632211 123567899999975 333 6676766654443
No 408
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=78.81 E-value=8.2 Score=39.46 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=42.0
Q ss_pred ccEEEEEeCCCcEEEEECCC----Cceee-----------eecC-----------CCCCeEEEEEec---CCCcEEEEee
Q 013545 160 HMLIAAGTEDVQVRLCDIAS----GAISQ-----------TLSG-----------HRDGIMTVEWST---SSEWILVTGG 210 (441)
Q Consensus 160 ~~~las~s~d~~I~vwdl~~----~~~~~-----------~l~~-----------h~~~v~~v~fsp---~~~~~l~s~s 210 (441)
...++.+..||.+-...... +.... .+.+ -...+.++++++ +++.++++-+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 34567777888887777654 21111 1111 123345566655 2334678999
Q ss_pred cCCcEEEEEcCCCceeeEecc
Q 013545 211 CDGAIRFWDIRRAGCFRVLDQ 231 (441)
Q Consensus 211 ~Dg~I~iWD~~~~~~~~~~~~ 231 (441)
.|+++|+||+.++.|+...+.
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEET
T ss_pred CCCeEEEEECCCCeEEEEecc
Confidence 999999999999999776543
No 409
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.74 E-value=54 Score=32.51 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=58.6
Q ss_pred cCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee-eeeeeEE--eccCcceEEEeeCCC------cEEEEeC------
Q 013545 305 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL-VNFETVR--LQTSKPIQLATTQDP------AVVFVPC------ 369 (441)
Q Consensus 305 ~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~------ 369 (441)
...+.|+|.|||+.|++--..|+|++++..++.... ..+.... .......-+++.|+- ..+++.-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 346789999999888877657999999866543211 1111111 124555667777663 2344431
Q ss_pred -----CCceEEEEccCC-------ce-Eeee---cccccceEEEEEcCCCCeEEEeecC
Q 013545 370 -----MTAVKAFDIWSG-------KT-CLTF---RGHYEYVNCCCFSSQDQELYTGGND 412 (441)
Q Consensus 370 -----~~~~~~wd~~~~-------~~-~~~l---~gh~~~v~~v~fspd~~~l~s~s~D 412 (441)
...+..|.+... +. +..+ ..|. --.|+|.|||+++++.|+-
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 122333443211 11 1111 1243 3467899999988876644
No 410
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=78.60 E-value=1e+02 Score=33.28 Aligned_cols=91 Identities=10% Similarity=0.227 Sum_probs=50.0
Q ss_pred cEEEEECCCCeEEEEEecC--CeeE---EEeeccCCCCccEEEEEeC----------CCcEEEEECCCCceeeeecCC--
Q 013545 127 YVKVWDTNCTRVVMNFKMP--GKVY---RTAMSPLAASHMLIAAGTE----------DVQVRLCDIASGAISQTLSGH-- 189 (441)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~las~s~----------d~~I~vwdl~~~~~~~~l~~h-- 189 (441)
.++++|-++.+.+...+.. ..+. ++.+..+. +.++++|+. .|.|.++.....+.++.+..+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~--~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v 828 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDP--NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV 828 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCC--ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee
Confidence 4777777777766544432 2233 33344432 456666642 466777777664444444332
Q ss_pred CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~ 223 (441)
.+.|.++.-- +|+ ++| +-...||+|+..+.
T Consensus 829 ~Gav~aL~~f-ngk-llA--~In~~vrLye~t~~ 858 (1096)
T KOG1897|consen 829 KGAVYALVEF-NGK-LLA--GINQSVRLYEWTTE 858 (1096)
T ss_pred ccceeehhhh-CCe-EEE--ecCcEEEEEEcccc
Confidence 2444444432 344 444 45679999998754
No 411
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.90 E-value=26 Score=31.92 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=59.7
Q ss_pred EEccCCCEEEEeecC-----CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCC--------------
Q 013545 311 KVTEDGMYLLSAGSD-----SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-------------- 371 (441)
Q Consensus 311 ~~s~dg~~l~sgs~D-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 371 (441)
.|||||.+|.+.-.| |.|=+||...+-...-.+ ....-.+-.+.+.+||..++.+..+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~---~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF---STHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc---ccCCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence 599999998865444 568899987432222112 2223346677888999988876542
Q ss_pred -----ceEEEEccCCceEe--eec--ccccceEEEEEcCCCCeEEEe
Q 013545 372 -----AVKAFDIWSGKTCL--TFR--GHYEYVNCCCFSSQDQELYTG 409 (441)
Q Consensus 372 -----~~~~wd~~~~~~~~--~l~--gh~~~v~~v~fspd~~~l~s~ 409 (441)
.+-+.|..+|+++. +|. -|...|..++.-+||..++.+
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 23445555665543 333 445567888888887666654
No 412
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=75.82 E-value=26 Score=33.22 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=52.4
Q ss_pred eEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE----EeccCcceEEEeeCC---CcEEEEeCC---------
Q 013545 307 VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV----RLQTSKPIQLATTQD---PAVVFVPCM--------- 370 (441)
Q Consensus 307 v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~--------- 370 (441)
.++|+|.|||..+++ ...|+|++++ ..+.. ...+... ........-+++.|+ ...+++...
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~-~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSL-KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEE-CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcC-cceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 578999999988775 5699999999 33322 0111111 011233455677663 233333211
Q ss_pred -CceEEEEccCC-------ce-Eeeec-----ccccceEEEEEcCCCCeEEEeecCCc
Q 013545 371 -TAVKAFDIWSG-------KT-CLTFR-----GHYEYVNCCCFSSQDQELYTGGNDRQ 414 (441)
Q Consensus 371 -~~~~~wd~~~~-------~~-~~~l~-----gh~~~v~~v~fspd~~~l~s~s~D~~ 414 (441)
..+.-|....+ +. +..+. .|. ...|+|.|||.++++.|..+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~--g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHN--GGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS---EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCC--CccccCCCCCcEEEEeCCCCC
Confidence 12333444333 11 11112 233 466999999988887765543
No 413
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=75.81 E-value=73 Score=32.30 Aligned_cols=127 Identities=17% Similarity=0.313 Sum_probs=70.0
Q ss_pred eeccCeEEEEEccCC----CEEEEeecCCcEEEeeCCCC---CceeeeeeeEEeccC---cceEEEeeCCCcEEEEeCCC
Q 013545 302 AHYGAVTGLKVTEDG----MYLLSAGSDSRIRLWDVESG---RNTLVNFETVRLQTS---KPIQLATTQDPAVVFVPCMT 371 (441)
Q Consensus 302 ~h~~~v~~l~~s~dg----~~l~sgs~D~~i~~wd~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 371 (441)
+....|.+|.|+|-+ ..+.+---.+-|.+|.+... ++....-.+..+... .+.-+.+.|....+.+-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 344568899999864 35666777888999987621 111111111111111 12234566666665544333
Q ss_pred ceEE-EEc--cCCceEeeecccccceEEEEEcCCCCeEEEe-ecCCcEEEeCCCCCCCCCcc
Q 013545 372 AVKA-FDI--WSGKTCLTFRGHYEYVNCCCFSSQDQELYTG-GNDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 372 ~~~~-wd~--~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~-s~D~~i~vW~~~~~~~~~~~ 429 (441)
.+-+ .++ .+......+. -.+.|-|.+|++||++|+.| |.--.-.|||-...-+..+-
T Consensus 134 dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~Cs 194 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCS 194 (671)
T ss_pred ceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCC
Confidence 3322 222 2222222333 23569999999999998754 55556789987655444443
No 414
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=75.73 E-value=40 Score=27.04 Aligned_cols=124 Identities=11% Similarity=0.133 Sum_probs=65.9
Q ss_pred EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC----CCCEEEEEe
Q 013545 48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV----DTGLFVTGS 123 (441)
Q Consensus 48 ~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~~l~sgs 123 (441)
.-.|+. ...-|+.+..-|+|.|.+......... . ....+..+ .-...|++++.-+. +.+.|+-|+
T Consensus 3 iGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~--~--~~~~i~~L------Nin~~italaaG~l~~~~~~D~LliGt 71 (136)
T PF14781_consen 3 IGKFDG-VHPCLACATTGGKVFIHNPHERGQRTG--R--QDSDISFL------NINQEITALAAGRLKPDDGRDCLLIGT 71 (136)
T ss_pred EEEeCC-CceeEEEEecCCEEEEECCCccccccc--c--ccCceeEE------ECCCceEEEEEEecCCCCCcCEEEEec
Confidence 344543 233588888889999998754322110 0 01111111 11224556654332 355677665
Q ss_pred CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCC-CccEEEEEeCCCcEEEEECCCCceee
Q 013545 124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAA-SHMLIAAGTEDVQVRLCDIASGAISQ 184 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~las~s~d~~I~vwdl~~~~~~~ 184 (441)
. .++..||+....-+.....+..+.++.+..... ...++..| .+-.|.=||.+..+...
T Consensus 72 ~-t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 72 Q-TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFW 131 (136)
T ss_pred c-ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEE
Confidence 4 589999998776655555566666666654433 23344444 34456666655444433
No 415
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=75.49 E-value=18 Score=26.69 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=32.2
Q ss_pred EeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEcc
Q 013545 321 SAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW 379 (441)
Q Consensus 321 sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~ 379 (441)
.+..+|++.-||+.+++.... .. .-.-+.-++.++|+..++++-....|++..|
T Consensus 32 e~~~~GRll~ydp~t~~~~vl-~~----~L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVL-LD----GLYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp HT---EEEEEEETTTTEEEEE-EE----EESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEe-hh----CCCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 356678999999998763221 11 1234566788999998877766666655443
No 416
>PHA03098 kelch-like protein; Provisional
Probab=74.60 E-value=60 Score=33.03 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=49.1
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC--------CcEEEEECCCC
Q 013545 115 DTGLFVTGSYD------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED--------VQVRLCDIASG 180 (441)
Q Consensus 115 ~~~~l~sgs~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d--------~~I~vwdl~~~ 180 (441)
++.+.+.||.+ ..+..||+.+.+-...-.++........... ++.+.+.|+.+ ..+.+||.+++
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 46677777742 4578889876654322222211111111111 22344555432 23888998876
Q ss_pred ceee--eecCCCCCeEEEEEecCCCcEEEEeecC-----CcEEEEEcCC
Q 013545 181 AISQ--TLSGHRDGIMTVEWSTSSEWILVTGGCD-----GAIRFWDIRR 222 (441)
Q Consensus 181 ~~~~--~l~~h~~~v~~v~fsp~~~~~l~s~s~D-----g~I~iWD~~~ 222 (441)
+-.. .+.........+.+ +++ +++.|+.+ +.|..||+.+
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ceeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCC
Confidence 5321 12111111122222 444 66677654 4677777764
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.36 E-value=17 Score=35.37 Aligned_cols=101 Identities=9% Similarity=0.157 Sum_probs=56.3
Q ss_pred ccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCC-c
Q 013545 304 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG-K 382 (441)
Q Consensus 304 ~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~-~ 382 (441)
.|+|.++.||+|.+.||.--.|.+|.+++....+..+............+.-+.+..+ .-++.....++.+|..... .
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekr 144 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKR 144 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhh
Confidence 4689999999999999999999999999984332111100000111111222333333 3334444455555554322 2
Q ss_pred eEeeecccccceEEEEEcCCCCe
Q 013545 383 TCLTFRGHYEYVNCCCFSSQDQE 405 (441)
Q Consensus 383 ~~~~l~gh~~~v~~v~fspd~~~ 405 (441)
.+.....|...|+=.+|.|+-+.
T Consensus 145 slRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 145 SLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred hhhhhhhcccCccEEEEccccce
Confidence 23334456666766777777655
No 418
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=73.46 E-value=15 Score=22.05 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCCE-EEEEeCCCcEEEEECCCCeEEEEEecC
Q 013545 115 DTGL-FVTGSYDHYVKVWDTNCTRVVMNFKMP 145 (441)
Q Consensus 115 ~~~~-l~sgs~D~~i~iWd~~~~~~~~~~~~~ 145 (441)
++++ +++.-.+++|.++|+.++..+..+...
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 3444 445556889999999988887777654
No 419
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=73.21 E-value=11 Score=22.65 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=23.0
Q ss_pred cCCCcEEEEeecCCcEEEEEcCCCceeeEe
Q 013545 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVL 229 (441)
Q Consensus 200 p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~ 229 (441)
|++++++++.-.+++|.++|..++.....+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i 30 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATI 30 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 567777887777899999999876655544
No 420
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=73.03 E-value=72 Score=28.78 Aligned_cols=167 Identities=8% Similarity=0.066 Sum_probs=84.6
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+.+-...+..|+|+|+.+.+++.....+.|...+.+ ++.. . .+ .. .| .+..-.+.+.. ++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vl------r---~i-~l-----~g-~~D~EgI~y~g-~~~ 77 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVL------R---RI-PL-----DG-FGDYEGITYLG-NGR 77 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EE------E---EE-E------SS--SSEEEEEE-S-TTE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEE------E---EE-eC-----CC-CCCceeEEEEC-CCE
Confidence 3455566799999998767777888888888777764 2211 0 11 11 11 11233445543 444
Q ss_pred EEEEEeCCCcEEEEECCCCe------EEEEEecC------CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC---Cce
Q 013545 118 LFVTGSYDHYVKVWDTNCTR------VVMNFKMP------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS---GAI 182 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~------~~~~~~~~------~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~---~~~ 182 (441)
++++--.++.+.+.++.... ....+.+. ...-.+++.+.. + .|..+.......++.++. +..
T Consensus 78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--~-~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT--N-RLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT--T-EEEEEEESSSEEEEEEESTT-SS-
T ss_pred EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC--C-EEEEEeCCCChhhEEEccccCccc
Confidence 55554458889888873221 11222221 113445555532 2 344456666666776653 211
Q ss_pred eee--------ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCcee
Q 013545 183 SQT--------LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF 226 (441)
Q Consensus 183 ~~~--------l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~ 226 (441)
+.. .......+.+++|+|....+++-++.+..|-..| ..++..
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~ 205 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVV 205 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EE
T ss_pred eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEE
Confidence 111 1124456789999999777888888899999999 445433
No 421
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=72.82 E-value=8.6 Score=39.31 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=26.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP 145 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~ 145 (441)
+..++++-+.|+++|+||+.+++++.+..+.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 4678999999999999999999997766443
No 422
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=72.20 E-value=48 Score=33.72 Aligned_cols=109 Identities=12% Similarity=0.078 Sum_probs=64.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCCe--eEE---EeeccC--CCCccEEEEEeCCCcEEEEECCCCceeeeec-
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK--VYR---TAMSPL--AASHMLIAAGTEDVQVRLCDIASGAISQTLS- 187 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~--~~~---~~~~~~--~~~~~~las~s~d~~I~vwdl~~~~~~~~l~- 187 (441)
+.+++.++.++.|.-.|..+|+.+-++..... ... ...... ......+..++.|+.+.-.|.++|+.+....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 34677777788899999999998877654321 111 000000 0011245567789999999999999876543
Q ss_pred -CCCC--CeEE-EEEecCCCcEEEEee-----cCCcEEEEEcCCCcee
Q 013545 188 -GHRD--GIMT-VEWSTSSEWILVTGG-----CDGAIRFWDIRRAGCF 226 (441)
Q Consensus 188 -~h~~--~v~~-v~fsp~~~~~l~s~s-----~Dg~I~iWD~~~~~~~ 226 (441)
.+.. .+.+ -... ++ .+++..+ .+|.|.-+|.++++.+
T Consensus 149 ~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 149 GDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred ccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCcee
Confidence 2211 1211 1111 33 3443322 2689999999998754
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.84 E-value=1.4e+02 Score=31.65 Aligned_cols=91 Identities=15% Similarity=0.264 Sum_probs=55.8
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCC--C--cccCCCCceeccceeEEeecccccCcccceeEEEEeeC--CCC
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQR--A--TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV--DTG 117 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~ 117 (441)
-.|..+.++| +|++|+-.|..|...+ .+-. + ..++.+......+.+.+.+..+...+...|..+.|+|. ++.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 5899999996 5777777777555433 4421 1 11221111112233333333333456678989999985 357
Q ss_pred EEEEEeCCCcEEEEECCCC
Q 013545 118 LFVTGSYDHYVKVWDTNCT 136 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~ 136 (441)
.|+.=..|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8888889999999998653
No 424
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=71.36 E-value=89 Score=33.39 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=67.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeE---------EEeeccC-------------CCCccEEEEEeCCCcEE
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVY---------RTAMSPL-------------AASHMLIAAGTEDVQVR 173 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~---------~~~~~~~-------------~~~~~~las~s~d~~I~ 173 (441)
++.+..++.++.|.-.|.++|+.+-++....... .+.+... ......+..++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4578888888999999999999887776533211 1111110 01123566778899999
Q ss_pred EEECCCCceeeeecCCCCCeE-------------EEEEecC--CCcEEEEeec----------CCcEEEEEcCCCceee
Q 013545 174 LCDIASGAISQTLSGHRDGIM-------------TVEWSTS--SEWILVTGGC----------DGAIRFWDIRRAGCFR 227 (441)
Q Consensus 174 vwdl~~~~~~~~l~~h~~~v~-------------~v~fsp~--~~~~l~s~s~----------Dg~I~iWD~~~~~~~~ 227 (441)
-.|.+||+.+..+.. .+.|. .+.-.|- +. .++.|+. +|.|+-+|.++++..=
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 999999998876532 11110 1111110 22 2344532 6889999999987643
No 425
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.01 E-value=29 Score=30.64 Aligned_cols=26 Identities=12% Similarity=0.312 Sum_probs=22.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEE
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVM 140 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~ 140 (441)
.+++++.-..+|.+.+||+.+++.+.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~ 46 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVL 46 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeecc
Confidence 57789999999999999999887653
No 426
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.78 E-value=15 Score=39.88 Aligned_cols=40 Identities=18% Similarity=0.319 Sum_probs=32.6
Q ss_pred ccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccC
Q 013545 391 YEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDA 430 (441)
Q Consensus 391 ~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~ 430 (441)
...++|++|+|.|+.++.|-..|++.-+.+....-...-+
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~ 237 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPE 237 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeecccceeecccC
Confidence 3558999999999999999999999999987765443333
No 427
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=69.66 E-value=79 Score=32.06 Aligned_cols=111 Identities=15% Similarity=0.240 Sum_probs=62.4
Q ss_pred eeEEEEeeC---CCCEEEEEeCCCcEEEEECC-----CCeEEEEE--ecCC--e--eEEEeeccCCCCccEEEEEeCCCc
Q 013545 106 ISSAIWYPV---DTGLFVTGSYDHYVKVWDTN-----CTRVVMNF--KMPG--K--VYRTAMSPLAASHMLIAAGTEDVQ 171 (441)
Q Consensus 106 V~~~~~~~~---~~~~l~sgs~D~~i~iWd~~-----~~~~~~~~--~~~~--~--~~~~~~~~~~~~~~~las~s~d~~ 171 (441)
|..+.|.|. +...++..-..+.|.+|.+. ..+.+..- .+.. + ...+.|+|.. .+|++=.....
T Consensus 59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~---~iL~VLT~~dv 135 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK---AILTVLTARDV 135 (671)
T ss_pred eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC---ceEEEEecCce
Confidence 445666553 34467777888999999864 22222221 1111 1 2344566643 34544433332
Q ss_pred EEEEECCCC-cee-eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEc
Q 013545 172 VRLCDIASG-AIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220 (441)
Q Consensus 172 I~vwdl~~~-~~~-~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~ 220 (441)
-.++++... ..+ ..+ .-.+.|.|..|.+||+++++..+..=.-.+||-
T Consensus 136 SV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 234444322 222 234 345779999999999987666665556788884
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.65 E-value=90 Score=33.08 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=49.5
Q ss_pred eEEEeeCCCcEEEEeCCCceEEEEc---cC-------Cc---eEeee--------cccccceEEEEEcCC---CCeEEEe
Q 013545 354 IQLATTQDPAVVFVPCMTAVKAFDI---WS-------GK---TCLTF--------RGHYEYVNCCCFSSQ---DQELYTG 409 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~wd~---~~-------~~---~~~~l--------~gh~~~v~~v~fspd---~~~l~s~ 409 (441)
..+..+++|..++..+...+-+..+ |. |+ .+.++ ..+...|..+.|+|. +.+|+.=
T Consensus 88 ~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vL 167 (717)
T PF10168_consen 88 HQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVL 167 (717)
T ss_pred EEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEE
Confidence 3577789999988888777766665 11 11 12221 244567999999997 4788877
Q ss_pred ecCCcEEEeCCCC
Q 013545 410 GNDRQILVWCPSR 422 (441)
Q Consensus 410 s~D~~i~vW~~~~ 422 (441)
..|+++|++|+..
T Consensus 168 tsdn~lR~y~~~~ 180 (717)
T PF10168_consen 168 TSDNTLRLYDISD 180 (717)
T ss_pred ecCCEEEEEecCC
Confidence 8899999999974
No 429
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=69.29 E-value=21 Score=26.17 Aligned_cols=49 Identities=10% Similarity=0.063 Sum_probs=33.9
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 170 VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 170 ~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
+.|-.||.+.- +....--.....|.++|+++.++++....+.|.+|..+
T Consensus 36 ~~Vvyyd~~~~---~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEV---KVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEe---EEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 34666765432 22222233447899999999999999999999999865
No 430
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=68.71 E-value=11 Score=20.74 Aligned_cols=25 Identities=20% Similarity=0.508 Sum_probs=19.8
Q ss_pred eEEEEEccCCCEEEEeecCCcEEEe
Q 013545 307 VTGLKVTEDGMYLLSAGSDSRIRLW 331 (441)
Q Consensus 307 v~~l~~s~dg~~l~sgs~D~~i~~w 331 (441)
..+|+++++|..+++-+...+|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4678888999888888887777664
No 431
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.70 E-value=66 Score=32.09 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=53.7
Q ss_pred CeEEEEEccCCCEEEEeecCCcEEEeeCCC-CCceeeeeeeEEeccCcc-eEEEeeCCCcEEEEeCCCceEEEEccCCce
Q 013545 306 AVTGLKVTEDGMYLLSAGSDSRIRLWDVES-GRNTLVNFETVRLQTSKP-IQLATTQDPAVVFVPCMTAVKAFDIWSGKT 383 (441)
Q Consensus 306 ~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~ 383 (441)
.|..|..++.|..++-.|.+|-+.++=... |+.. .+ ..+.+ +.+-..+-+..+|+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s--~~-----eDgk~~v~CRt~~i~~~~fts--------------- 162 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNS--EF-----EDGKSTVNCRTTPVAERFFTS--------------- 162 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccc--ee-----cCCCceEEEEeecccceeecc---------------
Confidence 478889999999999999999554432111 1110 01 11111 111111111111111
Q ss_pred EeeecccccceEEEEEcCCC---CeEEEeecCCcEEEeCCCCCCCCC
Q 013545 384 CLTFRGHYEYVNCCCFSSQD---QELYTGGNDRQILVWCPSRHISDG 427 (441)
Q Consensus 384 ~~~l~gh~~~v~~v~fspd~---~~l~s~s~D~~i~vW~~~~~~~~~ 427 (441)
. -.-.+..++|+|+. .+|+--+.|.+|||++.+...-..
T Consensus 163 ----s-~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 163 ----S-TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred ----C-CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 1 11236778899975 567777789999999998776553
No 432
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=66.37 E-value=1.9e+02 Score=31.01 Aligned_cols=55 Identities=16% Similarity=0.061 Sum_probs=35.0
Q ss_pred ceEEEEccCCceEeeecccccceEE---------EEEcC-CCC---eEEEeecCCcEEEeCCCCCCCC
Q 013545 372 AVKAFDIWSGKTCLTFRGHYEYVNC---------CCFSS-QDQ---ELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 372 ~~~~wd~~~~~~~~~l~gh~~~v~~---------v~fsp-d~~---~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
.+-..|+.+|+..-.++.....+++ +.+.. +|+ .++.+..+|.+.+.|..+++..
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 4566788888877665542221222 12222 564 6788889999999999887743
No 433
>PHA02790 Kelch-like protein; Provisional
Probab=65.65 E-value=1.5e+02 Score=29.68 Aligned_cols=100 Identities=14% Similarity=0.144 Sum_probs=49.5
Q ss_pred CCCEEEEEeCCC---cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee--eeecCC
Q 013545 115 DTGLFVTGSYDH---YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS--QTLSGH 189 (441)
Q Consensus 115 ~~~~l~sgs~D~---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~--~~l~~h 189 (441)
++.+.+.||.++ ++..||..+.+-...-.++-+......... ++.+.+.| |.+.+||.++++-. ..+...
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecCCCCcEeEcCCCCCC
Confidence 566778887653 477888876654332222211111111111 22344444 35788998776422 222222
Q ss_pred CCCeEEEEEecCCCcEEEEeecC-----CcEEEEEcCC
Q 013545 190 RDGIMTVEWSTSSEWILVTGGCD-----GAIRFWDIRR 222 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s~D-----g~I~iWD~~~ 222 (441)
......+.+ +++ +.+.||.+ .+|..||..+
T Consensus 437 r~~~~~~v~--~~~-IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 437 RDNPELIIV--DNK-LLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred ccccEEEEE--CCE-EEEECCcCCCcccceEEEEECCC
Confidence 222223332 344 67788754 3566777654
No 434
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=63.92 E-value=80 Score=27.55 Aligned_cols=103 Identities=10% Similarity=0.076 Sum_probs=59.3
Q ss_pred CCCEEEEEeCC--CcEEEEECCCCeEEEEEecCC-eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC
Q 013545 115 DTGLFVTGSYD--HYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (441)
Q Consensus 115 ~~~~l~sgs~D--~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~ 191 (441)
++.++.|.|.= ..|+.||+.+++.+..-++.. .++.-.+...+. ..+. ---.++.-..+|..+-+.+..++ ..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~-LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQ-LTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEE-EEeccceeEEEChHHhhhhcccc-cCC
Confidence 45667777663 469999999999877665541 222111222111 1122 23457788889988877766654 344
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~ 223 (441)
.-+.++. +++.+++| +...++++-|.++.
T Consensus 132 eGWgLt~--d~~~Lims-dGsatL~frdP~tf 160 (262)
T COG3823 132 EGWGLTS--DDKNLIMS-DGSATLQFRDPKTF 160 (262)
T ss_pred cceeeec--CCcceEee-CCceEEEecCHHHh
Confidence 4466665 44445544 33456777776543
No 435
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=60.99 E-value=4.8 Score=42.18 Aligned_cols=107 Identities=21% Similarity=0.216 Sum_probs=55.8
Q ss_pred eeCCCCEEEEEeCCCcEEEEECC-CC----eEEEEEecCCeeEEEeeccCCCC---------ccEEEEEeCCCcEEEEEC
Q 013545 112 YPVDTGLFVTGSYDHYVKVWDTN-CT----RVVMNFKMPGKVYRTAMSPLAAS---------HMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 112 ~~~~~~~l~sgs~D~~i~iWd~~-~~----~~~~~~~~~~~~~~~~~~~~~~~---------~~~las~s~d~~I~vwdl 177 (441)
.++||..||.++.||.+++|.+- ++ .+++.++.+.+-..+++.++... ..++-+...+..+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 34588888999999998888642 12 23333333221112222221110 123344445668899987
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCc-----------EEEEeecCCcEEEEEcC
Q 013545 178 ASGAISQTLSGHRDGIMTVEWSTSSEW-----------ILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~-----------~l~s~s~Dg~I~iWD~~ 221 (441)
..-+++ ++--.+.|..|. -++++. .+++-+.|++|++|--+
T Consensus 323 a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 323 APWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 766654 222223344444 222221 23556778999999644
No 436
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=59.86 E-value=90 Score=25.07 Aligned_cols=102 Identities=11% Similarity=0.115 Sum_probs=60.8
Q ss_pred CEEEEEeCCCcEEEEECCC--------CeEEEEEecCCeeEEEeeccCC--CCccEEEEEeCCCcEEEEECCCCceeeee
Q 013545 117 GLFVTGSYDHYVKVWDTNC--------TRVVMNFKMPGKVYRTAMSPLA--ASHMLIAAGTEDVQVRLCDIASGAISQTL 186 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~las~s~d~~I~vwdl~~~~~~~~l 186 (441)
.-|+.+..-++|.|.+... ...+..+.+...+.+++..+.. ....+|..|+. ..+..||++...-+. +
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~F-y 88 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLF-Y 88 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhh-h
Confidence 3566666777888887653 2345666777777777666553 33456666654 579999998765432 1
Q ss_pred cCCCCCeEEEEEe---cCCCcEEEEeecCCcEEEEEcC
Q 013545 187 SGHRDGIMTVEWS---TSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 187 ~~h~~~v~~v~fs---p~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
+.-.+.|.++.+- .....+++. +.+..|+=||..
T Consensus 89 ke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~ 125 (136)
T PF14781_consen 89 KEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYE 125 (136)
T ss_pred hhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCC
Confidence 2233556666552 211224444 446677777754
No 437
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=59.70 E-value=24 Score=19.88 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=20.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEE
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMN 141 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~ 141 (441)
..++.++.|+.+...|.++|+.+.+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3677888999999999988887654
No 438
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=58.87 E-value=74 Score=31.14 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=28.9
Q ss_pred ccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 304 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 304 ~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
...+.+|+.+|++++.|+...-|+|.++|+.++.
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence 3458889999999999988888999999998753
No 439
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=58.39 E-value=83 Score=30.80 Aligned_cols=82 Identities=12% Similarity=0.011 Sum_probs=49.2
Q ss_pred ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCC---------------CccEEEEEe
Q 013545 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAA---------------SHMLIAAGT 167 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~---------------~~~~las~s 167 (441)
.+.++...| ++.+.|....=|.|-++|+.++..++.++.- ..+..+....... ...++.-+.
T Consensus 309 ~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 309 EGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred eEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 455666776 5666666555589999999998887766631 1111111111100 112344456
Q ss_pred CCCcEEEEECCCCceeeeec
Q 013545 168 EDVQVRLCDIASGAISQTLS 187 (441)
Q Consensus 168 ~d~~I~vwdl~~~~~~~~l~ 187 (441)
..|.|.||.+++|..+..+.
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cCCeEEEEecCCCCEEEEEE
Confidence 68899999999887665543
No 440
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=58.22 E-value=1.9e+02 Score=28.19 Aligned_cols=109 Identities=10% Similarity=0.135 Sum_probs=61.4
Q ss_pred EEEeeCCCCEEEEE-eCC----CcEEEEECCCCeEEEEEecCCeeE-EEeeccCCCCccEEEEEeC----------CCcE
Q 013545 109 AIWYPVDTGLFVTG-SYD----HYVKVWDTNCTRVVMNFKMPGKVY-RTAMSPLAASHMLIAAGTE----------DVQV 172 (441)
Q Consensus 109 ~~~~~~~~~~l~sg-s~D----~~i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~las~s~----------d~~I 172 (441)
..++| +++++|-+ +.. .+|++.|+++++.+... +..... .+.|.+++ ..++.+... ...|
T Consensus 129 ~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~--~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 129 FSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPKFSSVSWSDDG--KGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEESEEEEECTTS--SEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccccceEEEeCCC--CEEEEEEeCcccccccCCCCcEE
Confidence 34444 78877633 333 45999999999876432 111111 25666543 334555432 2347
Q ss_pred EEEECCCCcee--eeecCCCCC--eEEEEEecCCCcEEEEeecCCc---EEEEEcC
Q 013545 173 RLCDIASGAIS--QTLSGHRDG--IMTVEWSTSSEWILVTGGCDGA---IRFWDIR 221 (441)
Q Consensus 173 ~vwdl~~~~~~--~~l~~h~~~--v~~v~fsp~~~~~l~s~s~Dg~---I~iWD~~ 221 (441)
+.|.+.++..- ..+.+.... ...+..++++++++++.....+ +.+-|+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 88888777432 344443333 5688899999987776665444 4444544
No 441
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=58.06 E-value=86 Score=26.36 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=24.7
Q ss_pred ceEEEEEcCCC------CeEEEeecCCcEEEeCCCCC
Q 013545 393 YVNCCCFSSQD------QELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 393 ~v~~v~fspd~------~~l~s~s~D~~i~vW~~~~~ 423 (441)
.|..++|||-| -.|+....++.|.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 68999999943 23777888999999987753
No 442
>PHA02790 Kelch-like protein; Provisional
Probab=56.79 E-value=2.2e+02 Score=28.57 Aligned_cols=102 Identities=9% Similarity=-0.067 Sum_probs=47.7
Q ss_pred CCCEEEEeecCC---cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCC--ceEeeecc
Q 013545 315 DGMYLLSAGSDS---RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG--KTCLTFRG 389 (441)
Q Consensus 315 dg~~l~sgs~D~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~--~~~~~l~g 389 (441)
+|+..+.||.++ ++..||+.+.+-... .... .......+...++.+.+.+ +.+..+|..+. ..+..+..
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~--~~m~--~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~ 435 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFG--PSTY--YPHYKSCALVFGRRLFLVG--RNAEFYCESSNTWTLIDDPIY 435 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeC--CCCC--CccccceEEEECCEEEEEC--CceEEecCCCCcEeEcCCCCC
Confidence 466666666543 477888876542211 1100 0111112223344443333 24566776443 22222221
Q ss_pred cccceEEEEEcCCCCeEEEeecC-----CcEEEeCCCCCC
Q 013545 390 HYEYVNCCCFSSQDQELYTGGND-----RQILVWCPSRHI 424 (441)
Q Consensus 390 h~~~v~~v~fspd~~~l~s~s~D-----~~i~vW~~~~~~ 424 (441)
..... +++ .-+|+..+.||.+ .+|.++|+.+++
T Consensus 436 ~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 436 PRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred Ccccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 11112 222 2367888888865 357778877654
No 443
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=54.66 E-value=1.7e+02 Score=26.76 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=74.6
Q ss_pred eEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc-CcceEEEeeCCCcEEEEeCCCceEEEEccCCceEe
Q 013545 307 VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT-SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCL 385 (441)
Q Consensus 307 v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~ 385 (441)
-..|+-+|||..-.++...+.|---|..+++.... .+.. ..+--+...+|+...++.....+.-+|-++.+.-.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y-----pLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~ 138 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY-----PLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTR 138 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEE-----ecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEE
Confidence 45678888887777777777777778888764322 2222 33445667788888777666677777766554211
Q ss_pred ---eecccccceEEEEEcCCCCeEEEeecC---------CcEEEeCCCCCC
Q 013545 386 ---TFRGHYEYVNCCCFSSQDQELYTGGND---------RQILVWCPSRHI 424 (441)
Q Consensus 386 ---~l~gh~~~v~~v~fspd~~~l~s~s~D---------~~i~vW~~~~~~ 424 (441)
.+..-........|.++|..-+|+... +.|++|..+.+.
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~ 189 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG 189 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC
Confidence 122223557889999999988887543 568889877554
No 444
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.54 E-value=2.1e+02 Score=32.12 Aligned_cols=34 Identities=6% Similarity=0.207 Sum_probs=29.4
Q ss_pred eeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545 302 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 302 ~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~ 335 (441)
.+.++|..|++...-+.+.+-+..++|++||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4567899999987778888999999999999986
No 445
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=53.46 E-value=37 Score=35.20 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=28.3
Q ss_pred CeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 306 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 306 ~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
.++++.-+|.|+.++++..||.|++|+....+
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 47788999999999999999999999987654
No 446
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=53.05 E-value=43 Score=19.85 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=23.5
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecCC
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPG 146 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~ 146 (441)
.+..++.|+.|.-.|.++|+.+-.++...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 35556899999999999999988877554
No 447
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=52.49 E-value=2.1e+02 Score=27.04 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=21.0
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWD 219 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD 219 (441)
..++++|.|+++ +|++ -..|.|++++
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe
Confidence 458999999986 5654 5689999998
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=51.99 E-value=2.8 Score=40.77 Aligned_cols=110 Identities=20% Similarity=0.303 Sum_probs=64.6
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545 108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS 187 (441)
Q Consensus 108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~ 187 (441)
...|.+.+.+ ++.++.+..+..||-. ++.......++......+.- ..+.+++.+-..+.+.+||+++..-.+.-.
T Consensus 39 ~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDk--egdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 39 IHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred eeeEecCCCc-eehhhhhhHHHhhhhh-cceecccCCchhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 4456665555 7777788899999854 34444444454443333333 334455556677899999997654222111
Q ss_pred CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545 188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 188 ~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~ 222 (441)
+-...-.-+.|++..+. ++-+--.|.++|++.+.
T Consensus 115 gg~~s~sll~wsKg~~e-l~ig~~~gn~viynhgt 148 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPE-LVIGNNAGNIVIYNHGT 148 (615)
T ss_pred cCcchHHHHhhccCCcc-ccccccccceEEEeccc
Confidence 21221122667777663 56666678888887653
No 449
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.88 E-value=2.9e+02 Score=29.08 Aligned_cols=49 Identities=20% Similarity=0.433 Sum_probs=36.6
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 170 VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 170 ~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
-.|+|+++ +|.++..+....+.+..+.|+.+.. |+.-..||++.+|++-
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE--LICVQKDGTVHVYGLL 112 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCce--EEEEeccceEEEeecc
Confidence 45888887 5666655554445888999998764 4567899999999974
No 450
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=51.63 E-value=2e+02 Score=26.54 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=42.0
Q ss_pred cccceeEEEEeeCCCCEEEEEe------CCCcEEEEECCCCeEEEEE-----ecCCeeEEEeeccCCCCccEEEEEe-CC
Q 013545 102 HKYAISSAIWYPVDTGLFVTGS------YDHYVKVWDTNCTRVVMNF-----KMPGKVYRTAMSPLAASHMLIAAGT-ED 169 (441)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~sgs------~D~~i~iWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~las~s-~d 169 (441)
-.+.|..+.|.. +.++++.|. ....+..||..+......- .+++++..+.+.....+ .+.++|. .+
T Consensus 35 i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~-~~~~aG~~~~ 112 (281)
T PF12768_consen 35 ISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGS-NFWVAGRSAN 112 (281)
T ss_pred ceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCc-eEEEeceecC
Confidence 345688888874 455666654 3567888998776542211 23566766655443333 2443443 33
Q ss_pred C--cEEEEECCC
Q 013545 170 V--QVRLCDIAS 179 (441)
Q Consensus 170 ~--~I~vwdl~~ 179 (441)
+ .|..||=..
T Consensus 113 g~~~l~~~dGs~ 124 (281)
T PF12768_consen 113 GSTFLMKYDGSS 124 (281)
T ss_pred CCceEEEEcCCc
Confidence 3 466666443
No 451
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.38 E-value=91 Score=34.75 Aligned_cols=37 Identities=5% Similarity=0.003 Sum_probs=31.2
Q ss_pred cccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 388 RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 388 ~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
.++.++|..+++...-+.|.+=++.++|++|++..+-
T Consensus 239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred CCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 3678899999998777778899999999999997643
No 452
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=51.30 E-value=2.5e+02 Score=27.60 Aligned_cols=106 Identities=9% Similarity=0.289 Sum_probs=62.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCe-----EEEEEecCCeeEEEeeccCC--CCccEEEEEeCCCcEEEEECCC--Cc----
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTR-----VVMNFKMPGKVYRTAMSPLA--ASHMLIAAGTEDVQVRLCDIAS--GA---- 181 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~las~s~d~~I~vwdl~~--~~---- 181 (441)
+.+.++.||..|.+||++..... ++...++..++..+....+. .....||+ -.-..+.||.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 45789999999999999985433 45566677778777766542 12234554 3456778887721 11
Q ss_pred -e--eeeecCCC-----CCeEEEEEecC-CCcEEEEeecCCcEEEEEcC
Q 013545 182 -I--SQTLSGHR-----DGIMTVEWSTS-SEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 182 -~--~~~l~~h~-----~~v~~v~fsp~-~~~~l~s~s~Dg~I~iWD~~ 221 (441)
. +..+-.|. -......|-.. ++..+..=|.||++.+|+-+
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe 163 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE 163 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC
Confidence 1 11111221 11122223222 23456677899999999854
No 453
>PRK13684 Ycf48-like protein; Provisional
Probab=50.73 E-value=2.2e+02 Score=26.88 Aligned_cols=113 Identities=11% Similarity=0.085 Sum_probs=54.1
Q ss_pred cCeEEEEEccCCCEEEEeecCCcEE-EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCce
Q 013545 305 GAVTGLKVTEDGMYLLSAGSDSRIR-LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKT 383 (441)
Q Consensus 305 ~~v~~l~~s~dg~~l~sgs~D~~i~-~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~ 383 (441)
+.+.++.+.|++.+++++. .|.+. .++-. ......... ........+.+.+++..++++..+.+..=....|..
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g--g~tW~~~~~--~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~s 247 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG--QTAWTPHQR--NSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLES 247 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCCC--CCeEEEeeC--CCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCc
Confidence 4678899999987776654 44433 22211 111111110 011223344556666665555444332112223322
Q ss_pred Eeeecc----cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 384 CLTFRG----HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 384 ~~~l~g----h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
-....- -...+..++|.|++..++ ++.++.|. ...+.++
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK 290 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC
Confidence 221111 123478899999877555 55677654 3444333
No 454
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=48.08 E-value=1.2e+02 Score=31.96 Aligned_cols=74 Identities=7% Similarity=0.157 Sum_probs=47.9
Q ss_pred cCeEEEEEc--cCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCc
Q 013545 305 GAVTGLKVT--EDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGK 382 (441)
Q Consensus 305 ~~v~~l~~s--~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~ 382 (441)
...++|+++ ...++||.++.-..|.||-........ .. . +
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~---~~-----~--------~---------------------- 205 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERF---YH-----V--------P---------------------- 205 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEecccccc---cc-----c--------c----------------------
Confidence 368899998 778888888888888887554321000 00 0 0
Q ss_pred eEeeecccccceEEEEEcCCC---C---eEEEeecCCcEEEeCC
Q 013545 383 TCLTFRGHYEYVNCCCFSSQD---Q---ELYTGGNDRQILVWCP 420 (441)
Q Consensus 383 ~~~~l~gh~~~v~~v~fspd~---~---~l~s~s~D~~i~vW~~ 420 (441)
. ..|..-|.||+|-++. . +|++++-.|.+.+|++
T Consensus 206 ---s-~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 ---S-HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ---c-cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 0 0033348888888764 2 6888899998888776
No 455
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=46.79 E-value=2.4e+02 Score=26.03 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=29.5
Q ss_pred cceeeecCCCCceeEEEccCCCCcEEEEee------CCCcEEEEECCCC
Q 013545 34 NYKEIVSPHKGSINSLQVDLTEERYLLSGA------SDSSVAVYDVQRA 76 (441)
Q Consensus 34 ~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s------~Dg~i~iwd~~~~ 76 (441)
++...-.+-.+.|++|.|. ++.++++.|. ....+..||.++.
T Consensus 27 qW~~~g~~i~G~V~~l~~~-~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 27 QWSSPGNGISGTVTDLQWA-SNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred EeecCCCCceEEEEEEEEe-cCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 3444444567899999996 5566777775 4566889998654
No 456
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=44.06 E-value=2.2e+02 Score=24.95 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=16.1
Q ss_pred ccccceEEEEEcCCC-CeEEEe
Q 013545 389 GHYEYVNCCCFSSQD-QELYTG 409 (441)
Q Consensus 389 gh~~~v~~v~fspd~-~~l~s~ 409 (441)
.|.+-.+.+|+-|++ ++++||
T Consensus 226 ~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 226 SNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccccceeecCcCCeEEEec
Confidence 455678899999987 667777
No 457
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=43.69 E-value=55 Score=23.98 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=23.7
Q ss_pred cceEEEEEcCCCCeEEEe-ecCCcEEEeCCCC
Q 013545 392 EYVNCCCFSSQDQELYTG-GNDRQILVWCPSR 422 (441)
Q Consensus 392 ~~v~~v~fspd~~~l~s~-s~D~~i~vW~~~~ 422 (441)
..-+.++++||+++|..+ ...+.|+++..+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 446889999999998755 4578899987653
No 458
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=43.14 E-value=59 Score=17.99 Aligned_cols=25 Identities=0% Similarity=0.003 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 393 YVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 393 ~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
.|.+++.++ ++++.+-+-+.+|+|+
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 478888876 5888777788899874
No 459
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=40.59 E-value=5.8e+02 Score=28.73 Aligned_cols=112 Identities=12% Similarity=0.102 Sum_probs=58.9
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEEC-CCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDT-NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS 179 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~ 179 (441)
..+++|..++-. +| +|++|. -.+|.+|++ +....+...-..-+++...+.... ++|..|..-..|.....+.
T Consensus 1095 E~KGtVsavceV--~G-~l~~~~-GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vk---nlIl~gDV~ksisfl~fqe 1167 (1366)
T KOG1896|consen 1095 EQKGTVSAVCEV--RG-HLLSSQ-GQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVK---NLILAGDVMKSISFLGFQE 1167 (1366)
T ss_pred hcccceEEEEEe--cc-EEEEcc-CcEEEEEEeccCCcceeeEEeccceeEEehhhhh---hheehhhhhhceEEEEEcc
Confidence 455667655543 34 666653 357999999 444433221122223333332221 2444454444555555443
Q ss_pred CceeeeecC---CCCCeEEEEEecCCCc-EEEEeecCCcEEEEE
Q 013545 180 GAISQTLSG---HRDGIMTVEWSTSSEW-ILVTGGCDGAIRFWD 219 (441)
Q Consensus 180 ~~~~~~l~~---h~~~v~~v~fsp~~~~-~l~s~s~Dg~I~iWD 219 (441)
......+-+ ..=.+.++.|--+|.. .|+.+..|+.|++|-
T Consensus 1168 ep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~ 1211 (1366)
T KOG1896|consen 1168 EPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYM 1211 (1366)
T ss_pred CceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEE
Confidence 332222221 2235788888777653 467788899999884
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=39.51 E-value=4.1e+02 Score=26.74 Aligned_cols=60 Identities=5% Similarity=0.091 Sum_probs=41.3
Q ss_pred CCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 361 DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 361 ~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
...++++++. +.+|+||.-.......+.+-...|-.+..+.+|++++... ...+.+-+.+
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 3445555544 7899999755555556777778899999999999966443 4456565554
No 461
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=38.46 E-value=3.4e+02 Score=25.40 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=47.0
Q ss_pred CcEEEEECCCCeEEEEEecCCe---eEEEeeccCC---CCccEEEEEeCCCcEEEEECCCCceeeeecCCC------CCe
Q 013545 126 HYVKVWDTNCTRVVMNFKMPGK---VYRTAMSPLA---ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR------DGI 193 (441)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~------~~v 193 (441)
+.|-++|+ .+..++.+...+. ...++..|.. .+..+|+.--.||.|..||..+++.+..+.+.. ...
T Consensus 222 G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GL 300 (336)
T TIGR03118 222 GYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGL 300 (336)
T ss_pred ceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCe
Confidence 56777776 3566665543332 2233443321 234567766779999999999999887776543 335
Q ss_pred EEEEEec
Q 013545 194 MTVEWST 200 (441)
Q Consensus 194 ~~v~fsp 200 (441)
+.++|-.
T Consensus 301 WgL~fGn 307 (336)
T TIGR03118 301 WSLTFGN 307 (336)
T ss_pred EEeeeCC
Confidence 7788865
No 462
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=38.16 E-value=4e+02 Score=28.65 Aligned_cols=97 Identities=9% Similarity=0.038 Sum_probs=60.1
Q ss_pred CeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCcee-eeeeeE-----Ee-c----cCcceEEEeeCCCcEEEEeCCCce
Q 013545 306 AVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTL-VNFETV-----RL-Q----TSKPIQLATTQDPAVVFVPCMTAV 373 (441)
Q Consensus 306 ~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~-~~~~~~-----~~-~----~~~~~~~~~~~~~~~~~~~~~~~~ 373 (441)
+...|+|+|.. ..||.-...|...||++....... ...... .+ . .+.-..+.+..+...+++.....+
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l 226 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKL 226 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCce
Confidence 46678999864 589999999999999993221100 000000 00 0 111225566667777777777888
Q ss_pred EEEEccCCceEe--eecccccceEEEEEcCC
Q 013545 374 KAFDIWSGKTCL--TFRGHYEYVNCCCFSSQ 402 (441)
Q Consensus 374 ~~wd~~~~~~~~--~l~gh~~~v~~v~fspd 402 (441)
.++|+.+..... ........|.++.-+|+
T Consensus 227 ~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 227 MLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred EEEECCCCCccchhccCCChhheeeEEecCC
Confidence 899987765533 22334466888888887
No 463
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=37.09 E-value=1.7e+02 Score=25.66 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=39.3
Q ss_pred cEEEE-eCCCceEEEEcc--CCceEeeecccccceEEEEEcCCCCeEEEeecCC------cEEEe
Q 013545 363 AVVFV-PCMTAVKAFDIW--SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR------QILVW 418 (441)
Q Consensus 363 ~~~~~-~~~~~~~~wd~~--~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~------~i~vW 418 (441)
..+++ ..+-.+.+|++. ..+.+.+|..- +.|..++.+.-|.+|+|--.+. .+|++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 34434 445579999987 34556677766 7899999999999999965442 45665
No 464
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=35.22 E-value=3.8e+02 Score=25.07 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=42.2
Q ss_pred EeCCCcEEEEECCCCceeeeec--CCCCCeEEEEEecC------CCcEEEEeecCCcEEEEEcCCCceeeEe
Q 013545 166 GTEDVQVRLCDIASGAISQTLS--GHRDGIMTVEWSTS------SEWILVTGGCDGAIRFWDIRRAGCFRVL 229 (441)
Q Consensus 166 ~s~d~~I~vwdl~~~~~~~~l~--~h~~~v~~v~fsp~------~~~~l~s~s~Dg~I~iWD~~~~~~~~~~ 229 (441)
|-.-|.|-+||+ .|.+++++. +.....+.++..|. +. +|+---.||+|..||..++..+-.+
T Consensus 218 G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 218 GAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred CCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC-eEEeecCCceeEEecCCCCceeeee
Confidence 334578999998 567777663 45566677777553 33 5665556999999999877654433
No 465
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=33.45 E-value=3.9e+02 Score=24.65 Aligned_cols=143 Identities=14% Similarity=0.299 Sum_probs=0.0
Q ss_pred cEEEEECCCCeEEEEEecC-------CeeEEEeeccCCCCc---cEEEEEeCCCcEEEEECCCCceeeeecCC-------
Q 013545 127 YVKVWDTNCTRVVMNFKMP-------GKVYRTAMSPLAASH---MLIAAGTEDVQVRLCDIASGAISQTLSGH------- 189 (441)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~las~s~d~~I~vwdl~~~~~~~~l~~h------- 189 (441)
+|-+||+++.+.++++.++ +....+.+....... ....+=...+-|.|+|+.+++.-+.+.++
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Q ss_pred ------------CCCeEEEEEec---CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545 190 ------------RDGIMTVEWST---SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS 254 (441)
Q Consensus 190 ------------~~~v~~v~fsp---~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (441)
.+.+..++.+| +++++....=. .-++|-+.
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls--s~~ly~v~--------------------------------- 159 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS--SRKLYRVP--------------------------------- 159 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT---SEEEEEE---------------------------------
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCC--CCcEEEEE---------------------------------
Q ss_pred CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccc------cceeecc-CeEEEEEccCCCEEEEeecCCc
Q 013545 255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQD------RATAHYG-AVTGLKVTEDGMYLLSAGSDSR 327 (441)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~h~~-~v~~l~~s~dg~~l~sgs~D~~ 327 (441)
...+......... ...+..+ .-..++++++|..+.+--....
T Consensus 160 -------------------------------T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~a 208 (287)
T PF03022_consen 160 -------------------------------TSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNA 208 (287)
T ss_dssp -------------------------------HHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTE
T ss_pred -------------------------------HHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCe
Q ss_pred EEEeeCCC
Q 013545 328 IRLWDVES 335 (441)
Q Consensus 328 i~~wd~~~ 335 (441)
|..|+..+
T Consensus 209 I~~w~~~~ 216 (287)
T PF03022_consen 209 IGCWDPDG 216 (287)
T ss_dssp EEEEETTT
T ss_pred EEEEeCCC
No 466
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=32.17 E-value=13 Score=19.60 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=5.7
Q ss_pred EEcCCCCe
Q 013545 398 CFSSQDQE 405 (441)
Q Consensus 398 ~fspd~~~ 405 (441)
.|||+|+.
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 47888865
No 467
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=31.79 E-value=74 Score=18.96 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=14.8
Q ss_pred CCEEEEeecCCcEEEeeCCC
Q 013545 316 GMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 316 g~~l~sgs~D~~i~~wd~~~ 335 (441)
+..|..++.|+++..+|.++
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 45777888899999998763
No 468
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=30.31 E-value=4.2e+02 Score=24.13 Aligned_cols=84 Identities=12% Similarity=0.010 Sum_probs=42.2
Q ss_pred eEEEEEecCCeeE--EEeeccCCCCccEEEEEeCCC--cEEEEECCCCceeeeecC-CCCCeEEEEEecCCCcEEEEeec
Q 013545 137 RVVMNFKMPGKVY--RTAMSPLAASHMLIAAGTEDV--QVRLCDIASGAISQTLSG-HRDGIMTVEWSTSSEWILVTGGC 211 (441)
Q Consensus 137 ~~~~~~~~~~~~~--~~~~~~~~~~~~~las~s~d~--~I~vwdl~~~~~~~~l~~-h~~~v~~v~fsp~~~~~l~s~s~ 211 (441)
+.+.++++....+ .+.+..+ ..++-|.+.-| .|+.+|+++++......- ..---..++...+ + +..-.=.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~---g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~-l~qLTWk 108 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDD---GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-K-LYQLTWK 108 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEET---TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-E-EEEEESS
T ss_pred EEEEECCCCCcccCccEEecCC---CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-E-EEEEEec
Confidence 3455566544333 2333221 23444444444 799999999987654321 1222234555543 2 3333345
Q ss_pred CCcEEEEEcCCCce
Q 013545 212 DGAIRFWDIRRAGC 225 (441)
Q Consensus 212 Dg~I~iWD~~~~~~ 225 (441)
++...+||..+.+.
T Consensus 109 ~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 109 EGTGFVYDPNTLKK 122 (264)
T ss_dssp SSEEEEEETTTTEE
T ss_pred CCeEEEEccccceE
Confidence 77888888765443
No 469
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=29.60 E-value=4.8e+02 Score=24.54 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=47.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEE-eC-------------------CCcEEE
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAG-TE-------------------DVQVRL 174 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~-s~-------------------d~~I~v 174 (441)
++.+-++=+..+.|..+|..+|+.......++....+.|. +. ++.+| |. .--|.+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~----G~-llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~v 286 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA----GD-FAFVGLSKLRESRVFGGLPIEERLDALGCGVAV 286 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee----CC-EEEEEeccccCCCCcCCCchhhhhhhhcccEEE
Confidence 4556666677788888888777665555555554444443 11 22222 11 012667
Q ss_pred EECCCCceeee--ecCCCCCeEEEEEecC
Q 013545 175 CDIASGAISQT--LSGHRDGIMTVEWSTS 201 (441)
Q Consensus 175 wdl~~~~~~~~--l~~h~~~v~~v~fsp~ 201 (441)
.|+++|..+.. +.+--.++..|+.-|.
T Consensus 287 idl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 287 IDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred EECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 77777776553 3455566667777765
No 470
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=28.55 E-value=5e+02 Score=24.38 Aligned_cols=106 Identities=14% Similarity=0.289 Sum_probs=55.3
Q ss_pred ccCeEEEEEccCCCEEEEeecCCc------EEEeeCCCCC---ceeeeeeeEEecc--Ccce--------EEEeeCCCcE
Q 013545 304 YGAVTGLKVTEDGMYLLSAGSDSR------IRLWDVESGR---NTLVNFETVRLQT--SKPI--------QLATTQDPAV 364 (441)
Q Consensus 304 ~~~v~~l~~s~dg~~l~sgs~D~~------i~~wd~~~~~---~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~ 364 (441)
.+.+.+|++.|++..+++-|.++. +...++.... ..........+.. +.+. .+++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 355778899876667777777777 6655554311 0011111111111 1111 2444455655
Q ss_pred EEEeC-C------CceEEEEccCCceEeee---------------cccccceEEEEEcCCCCeEEEee
Q 013545 365 VFVPC-M------TAVKAFDIWSGKTCLTF---------------RGHYEYVNCCCFSSQDQELYTGG 410 (441)
Q Consensus 365 ~~~~~-~------~~~~~wd~~~~~~~~~l---------------~gh~~~v~~v~fspd~~~l~s~s 410 (441)
+++.- . ..+..++.. |.....+ .......-.|+++|||+.|+++-
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 55432 2 235555543 5443322 12345689999999999766543
No 471
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=28.50 E-value=2.2e+02 Score=21.05 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=29.5
Q ss_pred EeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecC
Q 013545 166 GTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD 212 (441)
Q Consensus 166 ~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D 212 (441)
+..+|.+..||..+++....+.+ -.-...|+++|+++.+|++=..-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGG
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccC
Confidence 34567899999999875433333 34568999999998777764433
No 472
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.35 E-value=4.6e+02 Score=26.53 Aligned_cols=94 Identities=11% Similarity=0.161 Sum_probs=48.0
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECC---CCcccCCCCceeccceeEEeecc-cccCcccceeEEEEeeCC--C
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQ---RATDYEGGGHIAKHRSVFVVDKQ-HEHGHKYAISSAIWYPVD--T 116 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~~~~~~~~--~ 116 (441)
.-+|..+..++. |..++-.+.||-+.++=.+ ....++.+...-..+.. -+..+ ......-.+.-+.|+|.. .
T Consensus 103 ~feV~~vl~s~~-GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~-~i~~~~ftss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 103 LFEVYQVLLSPT-GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTT-PVAERFFTSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred eEEEEEEEecCC-CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEee-cccceeeccCCceeeeeccccCCccCC
Confidence 357888888864 6677777788876554211 11111111000000000 00000 001111234445677754 4
Q ss_pred CEEEEEeCCCcEEEEECCCCeE
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRV 138 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~ 138 (441)
..|..-+.|.+||+||+...+.
T Consensus 181 ~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred ceEEEEecCcEEEEEecCCcch
Confidence 5777778899999999875443
No 473
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=25.40 E-value=5.8e+02 Score=24.05 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=52.8
Q ss_pred CCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC---------------------Cce
Q 013545 315 DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM---------------------TAV 373 (441)
Q Consensus 315 dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 373 (441)
+|+.-++-+..|.+..+|.++++.... ..-.+.+.-+.+. |.+++++.. -.+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~V-----a~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv 284 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPV-----AFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGV 284 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEE-----EECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccE
Confidence 567777888888999999887764321 1112222222332 344433211 147
Q ss_pred EEEEccCCceEe--eecccccceEEEEEcCCCCe
Q 013545 374 KAFDIWSGKTCL--TFRGHYEYVNCCCFSSQDQE 405 (441)
Q Consensus 374 ~~wd~~~~~~~~--~l~gh~~~v~~v~fspd~~~ 405 (441)
.+.|+.+|..++ .|.+--.++.+|++-|.=+.
T Consensus 285 ~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r~ 318 (335)
T TIGR03032 285 AVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVRR 318 (335)
T ss_pred EEEECCCCCEEEEEEeCCceeEEEEEEEecCCCC
Confidence 788999999876 46677788999999997544
No 474
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.33 E-value=3.4e+02 Score=26.90 Aligned_cols=157 Identities=12% Similarity=0.109 Sum_probs=85.8
Q ss_pred ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~ 124 (441)
+-+.+-|+ +.+++| -+-..|.+.=|-++...... ...+-+ -.+++|.++.|++ |.+.+|.--.
T Consensus 24 esngvFfD-DaNkql-favrSggatgvvvkgpndDV--------piSfdm------~d~G~I~SIkFSl-DnkilAVQR~ 86 (657)
T KOG2377|consen 24 ESNGVFFD-DANKQL-FAVRSGGATGVVVKGPNDDV--------PISFDM------DDKGEIKSIKFSL-DNKILAVQRT 86 (657)
T ss_pred cccceeec-cCcceE-EEEecCCeeEEEEeCCCCCC--------Cceeee------cCCCceeEEEecc-CcceEEEEec
Confidence 45566675 334443 33445666777665332100 000111 2445899999987 7889999999
Q ss_pred CCcEEEEECCCCeEEEEEe--c---CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeeecCCCCCeEEEEE
Q 013545 125 DHYVKVWDTNCTRVVMNFK--M---PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMTVEW 198 (441)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~h~~~v~~v~f 198 (441)
|++|.+.+....+...... + ...+..+.|+.. . -+|--+ +.-+.+|-...-+ .++..+.|...|..-.|
T Consensus 87 ~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s--~--e~A~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~y 161 (657)
T KOG2377|consen 87 SKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS--T--EIAFIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMY 161 (657)
T ss_pred CceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC--e--eEEEEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEE
Confidence 9999999874332221111 1 112334444432 1 122222 2235666554332 34556778899999999
Q ss_pred ecCCCcEEEEee-cCCcEEEEEcCCC
Q 013545 199 STSSEWILVTGG-CDGAIRFWDIRRA 223 (441)
Q Consensus 199 sp~~~~~l~s~s-~Dg~I~iWD~~~~ 223 (441)
+|+-..+|.+.+ ..++..=+-++.+
T Consensus 162 c~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 162 CPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ccccceEeeeccccccccccEEEeec
Confidence 998776555555 4455554544443
No 475
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=25.18 E-value=1e+02 Score=20.36 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=15.6
Q ss_pred ceEEEEEcCCCCeEEEeec
Q 013545 393 YVNCCCFSSQDQELYTGGN 411 (441)
Q Consensus 393 ~v~~v~fspd~~~l~s~s~ 411 (441)
.+..+++-|||+.|+.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 3678899999999998853
No 476
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=24.53 E-value=6.7e+02 Score=24.49 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=57.1
Q ss_pred cCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee-eeeeeEEecc--CcceEEEeeCCCcEEEEeCCCceEEEEccCC
Q 013545 305 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL-VNFETVRLQT--SKPIQLATTQDPAVVFVPCMTAVKAFDIWSG 381 (441)
Q Consensus 305 ~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~ 381 (441)
..+.++.|.+++..++++ .+|.+. |....++.-. ..+....... .....+.+.+++..++++..+ +...-...|
T Consensus 281 ~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G-~v~~s~D~G 357 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG-ILLRSTDGG 357 (398)
T ss_pred cceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCC-cEEEeCCCC
Confidence 457889999999888766 555543 3333332100 0122211111 123345566666655554433 333333334
Q ss_pred ceEeee---cccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545 382 KTCLTF---RGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418 (441)
Q Consensus 382 ~~~~~l---~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW 418 (441)
+.-... ..-......+.|.++++.+++| .+|.|..|
T Consensus 358 ~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 358 KSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred cceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 332222 2234567899998887777755 57776655
No 477
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.06 E-value=5.9e+02 Score=23.69 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=60.8
Q ss_pred ccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc-CcceEEEeeCCCcEEEEeCC-CceEEEEccCC
Q 013545 304 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT-SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSG 381 (441)
Q Consensus 304 ~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~ 381 (441)
...+.+|.|+|+.++|.+-.....--+|=...|+.. .++.+.. ..+-.+.+..++.++++.-. .++.++.+...
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdli----rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLI----RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceE----EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 344899999999998887776666666644444421 1111110 11112223333333332211 23334433322
Q ss_pred ce----------EeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 382 KT----------CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 382 ~~----------~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
.. +.....-....-.+||.|.++.|.-+-+-.=++|+...
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 11 11222225668899999999999988877766666544
No 478
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.72 E-value=3.2e+02 Score=30.42 Aligned_cols=134 Identities=13% Similarity=0.164 Sum_probs=76.3
Q ss_pred EEEeeCCCcEEEEECCCCcccCCC--CceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC
Q 013545 59 LLSGASDSSVAVYDVQRATDYEGG--GHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT 136 (441)
Q Consensus 59 l~s~s~Dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~ 136 (441)
++..+++-.|..||+++.....-. ..+..++ +......-+.++.|.|.=-...|.+..|..|++..+...
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~--------ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~ 188 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSA--------TSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL 188 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhcccccccc--------chhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence 556666556889998765432100 0000000 000111223456666543445778888999999876432
Q ss_pred e-EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC----CCCCeEEEEEecCCCc
Q 013545 137 R-VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG----HRDGIMTVEWSTSSEW 204 (441)
Q Consensus 137 ~-~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~----h~~~v~~v~fsp~~~~ 204 (441)
. ....++......++.|++.+ ..++.|-.+|++.-|-..- +....+.+ ....|.+|.|.....+
T Consensus 189 ~~~v~s~p~t~~~Tav~WSprG---KQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 189 AQNVTSFPVTNSQTAVLWSPRG---KQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhcccCcccceeeEEecccc---ceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeE
Confidence 2 23334444556778888754 4688898889888776532 22222221 1477999999877654
No 479
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=22.40 E-value=6.8e+02 Score=23.83 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=55.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecCC---eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC-CC
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-DG 192 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~-~~ 192 (441)
..+..+..|+.|.-.|..++..+-.....+ ....-.+..+ -.+..++.++.+..+|..+|+.+....... -.
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~----G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSD----GKIYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeC----CeEEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 355556788888888888887654433332 1100111111 236677888889999998998877665444 11
Q ss_pred eEEEEEecCCCcEEEEeecCCcEEEEEcCCCc
Q 013545 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~ 224 (441)
+.......++. +..++.++.+.--|..++.
T Consensus 145 ~~~~~v~~~~~--v~~~s~~g~~~al~~~tG~ 174 (370)
T COG1520 145 YASPPVVGDGT--VYVGTDDGHLYALNADTGT 174 (370)
T ss_pred EecCcEEcCcE--EEEecCCCeEEEEEccCCc
Confidence 11212222221 2223345666655555443
No 480
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=21.83 E-value=4.6e+02 Score=23.02 Aligned_cols=40 Identities=18% Similarity=0.374 Sum_probs=29.5
Q ss_pred eCCCcEEEEECCCC--ceeeeecCCCCCeEEEEEecCCCcEEEE
Q 013545 167 TEDVQVRLCDIASG--AISQTLSGHRDGIMTVEWSTSSEWILVT 208 (441)
Q Consensus 167 s~d~~I~vwdl~~~--~~~~~l~~h~~~v~~v~fsp~~~~~l~s 208 (441)
.....|.+|++++. +...++.. -+.|..+.++..|+++ +|
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYl-vT 76 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYL-VT 76 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceE-EE
Confidence 45578999999843 34556654 3889999999999974 55
No 481
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.30 E-value=1.2e+03 Score=26.15 Aligned_cols=32 Identities=16% Similarity=0.013 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 394 VNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 394 v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
+.....++++..++++-.|+.+..||.+.++.
T Consensus 237 ~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 237 PNGQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccCccCCceEEEEEecCCEEeeecCCCce
Confidence 33333388999999999999999999998754
No 482
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=20.77 E-value=1.9e+02 Score=17.27 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=18.1
Q ss_pred CeEEEEEccCCCEEEEeecCC
Q 013545 306 AVTGLKVTEDGMYLLSAGSDS 326 (441)
Q Consensus 306 ~v~~l~~s~dg~~l~sgs~D~ 326 (441)
...+|++.++|...++|..++
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 478899999999999998765
No 483
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=20.75 E-value=8.5e+02 Score=24.30 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=30.3
Q ss_pred eEEEEeeCCCCEEEEEeCCCcEEEEECCCCeE--EEEEe------cCCeeEEEeeccCC
Q 013545 107 SSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV--VMNFK------MPGKVYRTAMSPLA 157 (441)
Q Consensus 107 ~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~--~~~~~------~~~~~~~~~~~~~~ 157 (441)
+.+.+.| |+.+|++--..+.|++++..++.. +..+. ..+....++++|+.
T Consensus 33 w~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 33 WALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred eEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4566666 676666654469999998655432 21111 13446788888874
No 484
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=20.74 E-value=1.1e+03 Score=27.26 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=22.4
Q ss_pred eeccCeEEEEEccCCCEEEEeecCCcEE
Q 013545 302 AHYGAVTGLKVTEDGMYLLSAGSDSRIR 329 (441)
Q Consensus 302 ~h~~~v~~l~~s~dg~~l~sgs~D~~i~ 329 (441)
+|...+.+|+++|||..+++-+.+-+||
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCchhhh
Confidence 5667788999999999988777666555
No 485
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=20.64 E-value=1.1e+03 Score=25.44 Aligned_cols=87 Identities=16% Similarity=0.088 Sum_probs=52.9
Q ss_pred ccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCce
Q 013545 304 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKT 383 (441)
Q Consensus 304 ~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~ 383 (441)
...|.+++...-+.+|+-.-.||+|.++|-.+.+..... ......+..+.--.+...
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~----~~~~~~~~~v~s~~~~Gf------------------- 315 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNET----RTNGEPPNTVTSLFQAGF------------------- 315 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccc----ccccCCcccccccccccc-------------------
Confidence 356888888888889999999999999998775422110 000000100000000000
Q ss_pred EeeecccccceEEEEEcCCCCeEEEeecCCcEE
Q 013545 384 CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQIL 416 (441)
Q Consensus 384 ~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~ 416 (441)
.|. +...+..++|||.+.-++.-..|+.+.
T Consensus 316 --~fp-~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 316 --HFP-CIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred --ccc-cCCCCceEEECcccceEEEEecCCCce
Confidence 111 112567899999999999998898866
Done!