Query 013545
Match_columns 441
No_of_seqs 190 out of 2421
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 12:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 4.9E-44 1.7E-48 337.6 38.7 289 38-421 27-320 (321)
2 1got_B GT-beta; complex (GTP-b 100.0 1.9E-43 6.6E-48 336.3 40.6 287 36-419 48-340 (340)
3 1vyh_C Platelet-activating fac 100.0 7.6E-44 2.6E-48 347.8 37.8 286 37-420 102-409 (410)
4 3frx_A Guanine nucleotide-bind 100.0 4.6E-43 1.6E-47 330.7 40.4 295 36-423 10-318 (319)
5 2pbi_B Guanine nucleotide-bind 100.0 1.2E-42 4.2E-47 332.6 38.8 289 36-419 57-354 (354)
6 4a11_B DNA excision repair pro 100.0 1.2E-41 4.3E-46 330.2 42.1 362 5-426 5-369 (408)
7 3iz6_a 40S ribosomal protein R 100.0 4.5E-43 1.5E-47 338.9 31.5 296 36-424 59-377 (380)
8 2xzm_R RACK1; ribosome, transl 100.0 2.1E-41 7.1E-46 322.6 39.1 298 36-423 14-341 (343)
9 2ynn_A Coatomer subunit beta'; 100.0 3.7E-41 1.3E-45 315.4 38.3 290 36-422 6-302 (304)
10 4aow_A Guanine nucleotide-bind 100.0 7E-41 2.4E-45 317.2 40.4 298 35-424 30-339 (340)
11 4gqb_B Methylosome protein 50; 100.0 9.6E-42 3.3E-46 324.8 34.3 297 41-425 28-334 (344)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.6E-41 1.9E-45 319.9 37.8 301 37-426 9-339 (345)
13 4ery_A WD repeat-containing pr 100.0 3.1E-40 1.1E-44 309.9 41.7 289 36-421 16-311 (312)
14 4g56_B MGC81050 protein; prote 100.0 1.7E-41 5.8E-46 325.0 32.1 291 40-423 39-344 (357)
15 1nr0_A Actin interacting prote 100.0 3.6E-41 1.2E-45 345.6 36.4 359 37-424 141-569 (611)
16 4e54_B DNA damage-binding prot 100.0 1.5E-41 5.3E-46 334.1 30.0 300 38-425 114-433 (435)
17 2hes_X YDR267CP; beta-propelle 100.0 2.9E-39 9.8E-44 306.2 40.3 294 37-422 8-328 (330)
18 1nr0_A Actin interacting prote 100.0 7E-40 2.4E-44 336.1 37.4 308 26-425 42-358 (611)
19 3dm0_A Maltose-binding peripla 100.0 2.2E-39 7.4E-44 337.4 39.2 294 37-422 376-693 (694)
20 3ei3_B DNA damage-binding prot 100.0 9.7E-39 3.3E-43 308.4 36.8 296 36-422 66-382 (383)
21 1erj_A Transcriptional repress 100.0 2.8E-38 9.7E-43 306.7 38.0 310 41-422 62-389 (393)
22 2ynn_A Coatomer subunit beta'; 100.0 2.8E-38 9.6E-43 295.8 34.2 254 99-430 9-267 (304)
23 2ymu_A WD-40 repeat protein; u 100.0 4.7E-38 1.6E-42 319.9 38.7 319 37-419 256-577 (577)
24 3zwl_B Eukaryotic translation 100.0 2.4E-37 8.2E-42 295.7 39.7 288 38-424 27-348 (369)
25 2pm7_B Protein transport prote 100.0 1.4E-37 4.9E-42 290.0 33.9 261 38-422 4-285 (297)
26 1sq9_A Antiviral protein SKI8; 100.0 3E-37 1E-41 298.9 32.9 298 36-424 9-397 (397)
27 3k26_A Polycomb protein EED; W 100.0 9.2E-37 3.2E-41 291.5 34.3 326 37-422 12-366 (366)
28 3gre_A Serine/threonine-protei 100.0 3.6E-37 1.2E-41 302.7 30.9 294 39-419 59-437 (437)
29 1vyh_C Platelet-activating fac 100.0 1.1E-36 3.7E-41 297.2 33.9 251 99-429 104-376 (410)
30 3bg1_A Protein SEC13 homolog; 100.0 6.9E-38 2.3E-42 294.8 24.3 260 36-421 6-292 (316)
31 2ymu_A WD-40 repeat protein; u 100.0 7E-36 2.4E-40 303.8 40.1 320 37-421 215-538 (577)
32 1gxr_A ESG1, transducin-like e 100.0 3.6E-35 1.2E-39 277.2 40.6 284 40-420 48-335 (337)
33 3i2n_A WD repeat-containing pr 100.0 3E-36 1E-40 287.1 33.3 300 36-424 11-355 (357)
34 2j04_B YDR362CP, TAU91; beta p 100.0 2.1E-37 7.3E-42 309.8 26.4 300 39-424 203-519 (524)
35 1k8k_C P40, ARP2/3 complex 41 100.0 5.3E-36 1.8E-40 287.2 34.7 309 37-423 2-362 (372)
36 4h5i_A Guanine nucleotide-exch 100.0 1.4E-36 4.9E-41 291.7 30.3 300 44-427 15-348 (365)
37 3ow8_A WD repeat-containing pr 100.0 2.3E-36 8E-41 285.0 30.9 251 99-428 28-285 (321)
38 3dwl_C Actin-related protein 2 100.0 7.3E-37 2.5E-41 294.3 25.8 309 37-420 5-377 (377)
39 2pm9_A Protein WEB1, protein t 100.0 1E-36 3.4E-41 296.9 26.8 294 40-423 64-415 (416)
40 1r5m_A SIR4-interacting protei 100.0 1.4E-35 4.9E-40 288.9 34.6 279 42-421 107-424 (425)
41 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-35 5.3E-40 327.4 38.4 368 37-425 609-1037(1249)
42 3f3f_A Nucleoporin SEH1; struc 100.0 6.5E-36 2.2E-40 282.8 30.4 302 36-426 4-341 (351)
43 4ggc_A P55CDC, cell division c 100.0 9.1E-35 3.1E-39 272.4 37.8 281 45-422 27-315 (318)
44 4gga_A P55CDC, cell division c 100.0 9.7E-35 3.3E-39 284.3 39.0 282 45-423 107-396 (420)
45 3odt_A Protein DOA1; ubiquitin 100.0 1.6E-34 5.5E-39 270.0 36.6 285 36-426 11-300 (313)
46 2pm9_A Protein WEB1, protein t 100.0 9.8E-36 3.3E-40 289.9 29.1 300 42-427 11-342 (416)
47 3vl1_A 26S proteasome regulato 100.0 1.5E-34 5.2E-39 282.1 35.5 344 44-422 57-419 (420)
48 4gqb_B Methylosome protein 50; 100.0 8E-35 2.7E-39 277.0 31.6 248 41-382 80-333 (344)
49 1got_B GT-beta; complex (GTP-b 100.0 4.1E-34 1.4E-38 271.8 34.0 250 99-429 51-308 (340)
50 4aez_A CDC20, WD repeat-contai 100.0 4.8E-34 1.6E-38 277.6 34.7 284 41-426 89-384 (401)
51 1r5m_A SIR4-interacting protei 100.0 9E-34 3.1E-38 276.1 36.2 294 41-424 43-363 (425)
52 4g56_B MGC81050 protein; prote 100.0 1.2E-34 4.3E-39 277.3 28.7 270 58-427 18-306 (357)
53 2oaj_A Protein SNI1; WD40 repe 100.0 3.4E-34 1.2E-38 305.1 34.9 221 39-337 13-244 (902)
54 1pgu_A Actin interacting prote 100.0 1.6E-33 5.4E-38 288.1 35.1 359 36-422 153-614 (615)
55 1p22_A F-BOX/WD-repeat protein 100.0 2.6E-33 8.9E-38 275.4 35.1 275 40-426 130-418 (435)
56 3v7d_B Cell division control p 100.0 9.8E-33 3.4E-37 273.2 39.5 286 37-427 115-426 (464)
57 3v7d_B Cell division control p 100.0 1.1E-32 3.8E-37 272.8 39.8 280 36-419 155-460 (464)
58 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-33 5.3E-38 300.0 34.9 366 42-424 97-666 (902)
59 3sfz_A APAF-1, apoptotic pepti 100.0 9.8E-34 3.3E-38 313.0 33.7 368 37-431 651-1125(1249)
60 1yfq_A Cell cycle arrest prote 100.0 1.3E-33 4.3E-38 267.6 29.7 286 37-420 5-322 (342)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.4E-32 8.1E-37 269.2 39.9 280 36-427 111-396 (445)
62 2j04_B YDR362CP, TAU91; beta p 100.0 7E-35 2.4E-39 291.6 21.9 251 42-425 132-431 (524)
63 4ery_A WD repeat-containing pr 100.0 4.6E-33 1.6E-37 261.0 32.1 253 99-431 19-277 (312)
64 3iz6_a 40S ribosomal protein R 100.0 1.1E-33 3.6E-38 273.2 27.9 254 99-425 62-332 (380)
65 3jrp_A Fusion protein of prote 100.0 1.9E-33 6.5E-38 269.8 29.5 261 37-422 5-287 (379)
66 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.1E-33 1.4E-37 265.5 31.2 250 99-423 11-284 (345)
67 1gxr_A ESG1, transducin-like e 100.0 3E-33 1E-37 264.0 29.8 284 42-426 8-300 (337)
68 2pbi_B Guanine nucleotide-bind 100.0 1E-32 3.4E-37 263.8 33.7 251 99-429 60-322 (354)
69 1erj_A Transcriptional repress 100.0 6.5E-33 2.2E-37 268.9 32.3 249 101-428 62-347 (393)
70 3mmy_A MRNA export factor; mRN 100.0 1.6E-32 5.3E-37 262.1 33.3 295 36-421 32-345 (368)
71 3mkq_A Coatomer beta'-subunit; 100.0 1.3E-32 4.4E-37 291.1 35.8 292 36-424 6-304 (814)
72 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.3E-32 1.5E-36 267.4 37.2 278 36-423 152-443 (445)
73 3frx_A Guanine nucleotide-bind 100.0 1.5E-32 5.2E-37 258.7 32.0 246 97-424 11-269 (319)
74 2hes_X YDR267CP; beta-propelle 100.0 1.6E-32 5.3E-37 259.8 31.7 247 99-423 10-281 (330)
75 3dw8_B Serine/threonine-protei 100.0 1.3E-32 4.3E-37 270.6 30.9 303 41-420 26-444 (447)
76 2aq5_A Coronin-1A; WD40 repeat 100.0 7.9E-33 2.7E-37 269.0 29.0 291 44-425 35-345 (402)
77 2xzm_R RACK1; ribosome, transl 100.0 1.1E-31 3.7E-36 255.4 32.7 249 98-426 16-289 (343)
78 2xyi_A Probable histone-bindin 100.0 8.1E-32 2.8E-36 264.4 29.0 275 39-424 124-412 (430)
79 1pgu_A Actin interacting prote 100.0 3.3E-31 1.1E-35 270.9 34.2 295 35-421 55-365 (615)
80 2j04_A TAU60, YPL007P, hypothe 100.0 3.4E-32 1.2E-36 267.0 24.5 268 42-421 14-296 (588)
81 3jro_A Fusion protein of prote 100.0 1.1E-31 3.6E-36 281.6 28.5 262 37-423 3-286 (753)
82 4gq1_A NUP37; propeller, trans 100.0 3.8E-31 1.3E-35 256.5 27.3 261 108-414 93-382 (393)
83 3mkq_A Coatomer beta'-subunit; 100.0 3E-30 1E-34 272.9 36.2 289 36-422 48-386 (814)
84 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.3E-30 1.8E-34 252.9 33.5 297 44-421 5-390 (450)
85 2pm7_B Protein transport prote 100.0 1.4E-30 4.7E-35 242.7 27.0 211 100-423 6-239 (297)
86 3dw8_B Serine/threonine-protei 100.0 9.5E-31 3.3E-35 257.2 27.2 258 101-426 26-377 (447)
87 3dm0_A Maltose-binding peripla 100.0 4.4E-30 1.5E-34 267.2 33.6 249 99-425 378-635 (694)
88 3vu4_A KMHSV2; beta-propeller 100.0 2.9E-30 9.9E-35 246.8 28.5 295 39-426 15-340 (355)
89 1sq9_A Antiviral protein SKI8; 100.0 5.5E-30 1.9E-34 247.8 30.4 265 98-429 11-329 (397)
90 3k26_A Polycomb protein EED; W 100.0 1.5E-30 5.3E-35 248.2 26.1 256 100-426 15-322 (366)
91 2w18_A PALB2, fancn, partner a 100.0 4.6E-30 1.6E-34 237.2 27.6 276 46-420 42-355 (356)
92 3vl1_A 26S proteasome regulato 100.0 3E-30 1E-34 251.7 26.2 242 106-424 59-324 (420)
93 3dwl_C Actin-related protein 2 100.0 7.8E-31 2.7E-35 252.2 21.2 245 102-421 10-280 (377)
94 3lrv_A PRE-mRNA-splicing facto 100.0 7.7E-30 2.6E-34 242.5 27.0 265 55-421 47-332 (343)
95 4aez_A CDC20, WD repeat-contai 100.0 6.3E-29 2.2E-33 241.4 34.0 250 40-387 131-387 (401)
96 3ei3_B DNA damage-binding prot 100.0 2E-29 6.8E-34 243.1 29.9 254 99-431 69-348 (383)
97 3i2n_A WD repeat-containing pr 100.0 6.2E-30 2.1E-34 243.3 25.9 252 100-424 15-293 (357)
98 3bg1_A Protein SEC13 homolog; 100.0 2.3E-30 7.8E-35 243.4 21.4 211 99-422 9-247 (316)
99 3gre_A Serine/threonine-protei 100.0 3.3E-30 1.1E-34 253.0 23.5 254 100-431 60-368 (437)
100 1yfq_A Cell cycle arrest prote 100.0 1.7E-29 5.8E-34 239.1 26.9 255 100-428 8-288 (342)
101 1k8k_C P40, ARP2/3 complex 41 100.0 3.7E-29 1.3E-33 239.5 29.4 249 101-422 6-274 (372)
102 3bws_A Protein LP49; two-domai 100.0 2.4E-28 8.3E-33 239.3 34.7 284 43-422 122-432 (433)
103 1l0q_A Surface layer protein; 100.0 2.4E-28 8.3E-33 235.9 34.1 269 57-425 3-278 (391)
104 3odt_A Protein DOA1; ubiquitin 100.0 3.7E-28 1.3E-32 226.6 33.2 243 99-429 14-262 (313)
105 2aq5_A Coronin-1A; WD40 repeat 100.0 7.6E-29 2.6E-33 240.8 28.8 260 38-383 76-345 (402)
106 3zwl_B Eukaryotic translation 100.0 4.3E-28 1.5E-32 231.4 32.6 260 99-428 28-310 (369)
107 3lrv_A PRE-mRNA-splicing facto 100.0 3.4E-29 1.2E-33 238.1 23.3 229 115-424 47-294 (343)
108 4gga_A P55CDC, cell division c 100.0 1.2E-27 4E-32 234.0 33.7 261 40-400 144-415 (420)
109 4aow_A Guanine nucleotide-bind 100.0 5.8E-28 2E-32 228.2 30.2 248 98-425 33-289 (340)
110 4e54_B DNA damage-binding prot 100.0 1.7E-28 5.9E-33 241.0 25.6 254 100-429 116-394 (435)
111 2j04_A TAU60, YPL007P, hypothe 100.0 3.2E-28 1.1E-32 238.9 27.1 261 39-411 48-350 (588)
112 1p22_A F-BOX/WD-repeat protein 100.0 3.4E-27 1.1E-31 231.8 32.5 235 101-424 131-367 (435)
113 4h5i_A Guanine nucleotide-exch 100.0 1E-27 3.5E-32 230.0 26.6 255 38-380 68-343 (365)
114 3jrp_A Fusion protein of prote 100.0 1.2E-27 4.1E-32 229.3 25.7 212 99-423 7-241 (379)
115 1l0q_A Surface layer protein; 100.0 4.6E-26 1.6E-30 219.9 34.4 286 38-424 27-344 (391)
116 3mmy_A MRNA export factor; mRN 100.0 1.2E-26 4E-31 221.3 29.1 250 99-429 35-311 (368)
117 4gq1_A NUP37; propeller, trans 100.0 4.5E-27 1.5E-31 227.8 25.5 265 42-379 88-388 (393)
118 3f3f_A Nucleoporin SEH1; struc 100.0 7.5E-27 2.6E-31 220.4 25.7 269 37-338 51-340 (351)
119 4a11_B DNA excision repair pro 100.0 5.6E-26 1.9E-30 219.8 30.9 287 41-421 97-404 (408)
120 3vu4_A KMHSV2; beta-propeller 100.0 6.4E-26 2.2E-30 216.6 28.3 239 100-424 16-273 (355)
121 2w18_A PALB2, fancn, partner a 99.9 1.6E-26 5.6E-31 213.5 22.7 212 42-333 110-355 (356)
122 2xyi_A Probable histone-bindin 99.9 5.7E-26 2E-30 222.7 27.9 229 38-335 176-410 (430)
123 4ggc_A P55CDC, cell division c 99.9 5.8E-25 2E-29 205.6 31.8 246 106-431 28-282 (318)
124 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.6E-25 5.5E-30 220.8 28.8 241 104-420 5-337 (450)
125 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.9E-25 6.5E-30 217.9 27.4 289 42-428 61-393 (415)
126 3bws_A Protein LP49; two-domai 99.9 4.5E-25 1.5E-29 215.9 30.3 241 105-427 124-395 (433)
127 3jro_A Fusion protein of prote 99.9 5.3E-26 1.8E-30 238.3 23.5 212 99-423 5-239 (753)
128 1nir_A Nitrite reductase; hemo 99.9 2.9E-24 9.8E-29 216.2 31.2 281 51-426 145-462 (543)
129 1nir_A Nitrite reductase; hemo 99.9 7.3E-24 2.5E-28 213.3 33.3 300 41-432 178-524 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.2E-22 4.2E-27 197.9 27.1 265 39-404 113-410 (415)
131 3u4y_A Uncharacterized protein 99.9 1E-21 3.5E-26 184.9 31.2 286 50-427 4-309 (331)
132 1ri6_A Putative isomerase YBHE 99.9 1.7E-21 5.7E-26 183.9 26.1 280 57-424 6-312 (343)
133 1pby_B Quinohemoprotein amine 99.9 3E-21 1E-25 181.6 25.9 294 57-427 2-315 (337)
134 2ecf_A Dipeptidyl peptidase IV 99.9 2.7E-21 9.3E-26 202.3 27.7 325 43-422 36-413 (741)
135 3vgz_A Uncharacterized protein 99.9 1.8E-19 6.1E-24 170.8 33.4 274 42-412 39-334 (353)
136 2ojh_A Uncharacterized protein 99.9 6.5E-21 2.2E-25 175.4 22.7 255 60-413 16-293 (297)
137 1xfd_A DIP, dipeptidyl aminope 99.9 7.8E-21 2.7E-25 198.3 23.5 316 44-422 17-393 (723)
138 2ecf_A Dipeptidyl peptidase IV 99.9 8.1E-20 2.8E-24 191.1 28.5 281 45-423 110-460 (741)
139 2z3z_A Dipeptidyl aminopeptida 99.9 5.5E-20 1.9E-24 191.4 26.4 295 46-428 28-397 (706)
140 1k32_A Tricorn protease; prote 99.9 7.6E-20 2.6E-24 198.5 27.8 280 42-424 294-639 (1045)
141 2z3z_A Dipeptidyl aminopeptida 99.9 5.6E-20 1.9E-24 191.3 25.7 282 44-424 82-437 (706)
142 3o4h_A Acylamino-acid-releasin 99.9 5.4E-20 1.8E-24 187.2 24.1 270 43-422 21-315 (582)
143 3hfq_A Uncharacterized protein 99.8 8E-19 2.7E-23 166.4 28.7 251 104-427 40-324 (347)
144 3u4y_A Uncharacterized protein 99.8 8.2E-19 2.8E-23 165.0 28.0 235 115-425 9-255 (331)
145 3vgz_A Uncharacterized protein 99.8 6.7E-19 2.3E-23 166.8 27.1 242 105-426 42-307 (353)
146 1ri6_A Putative isomerase YBHE 99.8 3.6E-18 1.2E-22 160.9 29.5 282 40-405 34-336 (343)
147 1jmx_B Amine dehydrogenase; ox 99.8 1.3E-18 4.6E-23 164.4 26.6 234 115-426 10-329 (349)
148 1k32_A Tricorn protease; prote 99.8 1.3E-18 4.3E-23 188.9 29.6 277 39-421 199-501 (1045)
149 1xfd_A DIP, dipeptidyl aminope 99.8 1.8E-18 6E-23 180.5 27.7 280 33-409 47-427 (723)
150 2ojh_A Uncharacterized protein 99.8 2.1E-18 7.1E-23 158.5 25.1 226 121-426 17-262 (297)
151 2oit_A Nucleoporin 214KDA; NH2 99.8 5.6E-19 1.9E-23 172.8 20.3 203 106-423 39-279 (434)
152 3scy_A Hypothetical bacterial 99.8 4.3E-17 1.5E-21 155.4 30.4 253 103-428 49-345 (361)
153 2oit_A Nucleoporin 214KDA; NH2 99.8 1E-18 3.6E-23 171.0 19.1 172 42-221 35-222 (434)
154 3o4h_A Acylamino-acid-releasin 99.8 5.3E-18 1.8E-22 172.5 21.8 232 102-420 20-274 (582)
155 3pe7_A Oligogalacturonate lyas 99.8 3.1E-17 1.1E-21 157.7 25.7 286 39-421 26-381 (388)
156 1pby_B Quinohemoprotein amine 99.8 1.3E-16 4.4E-21 149.8 28.7 252 45-392 35-322 (337)
157 1z68_A Fibroblast activation p 99.8 2.4E-18 8.3E-23 179.4 18.0 317 48-422 20-391 (719)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.3E-16 4.5E-21 152.5 27.8 249 105-424 41-343 (365)
159 3scy_A Hypothetical bacterial 99.8 8.5E-16 2.9E-20 146.4 31.7 271 42-400 48-360 (361)
160 1z68_A Fibroblast activation p 99.8 1.5E-17 5.1E-22 173.4 20.5 290 36-424 49-445 (719)
161 3hfq_A Uncharacterized protein 99.8 4.8E-16 1.7E-20 147.2 27.0 260 41-384 37-323 (347)
162 4a5s_A Dipeptidyl peptidase 4 99.7 3.8E-16 1.3E-20 163.3 23.8 291 44-433 17-364 (740)
163 1jmx_B Amine dehydrogenase; ox 99.7 1.5E-15 5.3E-20 143.2 25.0 301 48-390 4-335 (349)
164 1q7f_A NHL, brain tumor CG1071 99.7 2.9E-14 9.7E-19 131.1 31.5 251 40-424 26-282 (286)
165 2oiz_A Aromatic amine dehydrog 99.7 3.7E-15 1.3E-19 142.1 25.5 264 64-423 29-335 (361)
166 3fvz_A Peptidyl-glycine alpha- 99.7 1.2E-13 4.1E-18 129.9 31.1 250 104-423 24-323 (329)
167 3c5m_A Oligogalacturonate lyas 99.7 1.1E-14 3.8E-19 139.9 23.1 273 45-420 37-380 (396)
168 1jof_A Carboxy-CIS,CIS-muconat 99.6 6.6E-14 2.3E-18 133.6 25.7 257 41-381 37-342 (365)
169 3azo_A Aminopeptidase; POP fam 99.6 6.3E-14 2.1E-18 144.5 27.1 291 39-426 19-373 (662)
170 2dg1_A DRP35, lactonase; beta 99.6 4E-13 1.4E-17 126.2 26.7 278 44-421 6-313 (333)
171 2oiz_A Aromatic amine dehydrog 99.6 1.8E-12 6.2E-17 123.4 29.7 273 48-405 54-361 (361)
172 4a5s_A Dipeptidyl peptidase 4 99.6 2.9E-13 1E-17 141.5 26.1 163 36-224 49-296 (740)
173 3dsm_A Uncharacterized protein 99.6 6.8E-13 2.3E-17 124.7 25.2 273 64-431 15-311 (328)
174 1qks_A Cytochrome CD1 nitrite 99.6 4.7E-12 1.6E-16 127.2 32.1 320 56-432 167-548 (567)
175 3pe7_A Oligogalacturonate lyas 99.6 1.2E-13 4E-18 132.6 18.7 239 109-429 41-336 (388)
176 3azo_A Aminopeptidase; POP fam 99.6 4.1E-13 1.4E-17 138.5 23.7 242 102-418 128-407 (662)
177 3fvz_A Peptidyl-glycine alpha- 99.5 2.1E-12 7.1E-17 121.4 25.6 246 43-379 23-321 (329)
178 3e5z_A Putative gluconolactona 99.5 2.5E-12 8.5E-17 118.8 25.7 229 106-416 30-281 (296)
179 2xdw_A Prolyl endopeptidase; a 99.5 7.2E-12 2.5E-16 130.3 31.6 247 100-424 121-416 (710)
180 2gop_A Trilobed protease; beta 99.5 8.2E-12 2.8E-16 117.8 27.5 256 44-421 15-330 (347)
181 2bkl_A Prolyl endopeptidase; m 99.5 3.4E-12 1.2E-16 132.4 24.0 247 99-425 116-400 (695)
182 3no2_A Uncharacterized protein 99.5 5.2E-11 1.8E-15 108.8 27.6 215 116-409 5-230 (276)
183 2z2n_A Virginiamycin B lyase; 99.5 6.6E-10 2.3E-14 101.9 35.4 279 41-423 12-296 (299)
184 3c5m_A Oligogalacturonate lyas 99.4 1.3E-12 4.4E-17 125.4 15.1 235 106-429 38-336 (396)
185 1rwi_B Serine/threonine-protei 99.4 4.6E-11 1.6E-15 108.3 24.0 240 105-426 25-268 (270)
186 2gop_A Trilobed protease; beta 99.4 2.7E-11 9.2E-16 114.2 22.8 213 115-424 23-293 (347)
187 3e5z_A Putative gluconolactona 99.4 1.3E-10 4.5E-15 107.1 26.8 241 38-383 22-289 (296)
188 3dsm_A Uncharacterized protein 99.4 1.5E-10 5.1E-15 108.6 26.6 254 44-400 44-320 (328)
189 2mad_H Methylamine dehydrogena 99.4 1.6E-09 5.5E-14 103.3 33.6 244 108-428 70-356 (373)
190 2dg1_A DRP35, lactonase; beta 99.4 7.4E-11 2.5E-15 110.6 23.4 234 107-423 9-264 (333)
191 2xdw_A Prolyl endopeptidase; a 99.4 5.2E-11 1.8E-15 123.8 24.2 243 41-382 122-416 (710)
192 1yr2_A Prolyl oligopeptidase; 99.4 2.8E-10 9.4E-15 118.9 29.7 244 101-425 160-444 (741)
193 3no2_A Uncharacterized protein 99.4 3.5E-10 1.2E-14 103.3 26.6 185 55-338 4-198 (276)
194 1q7f_A NHL, brain tumor CG1071 99.4 2.5E-10 8.6E-15 104.5 25.3 203 101-423 27-239 (286)
195 2bkl_A Prolyl endopeptidase; m 99.4 3E-11 1E-15 125.3 21.0 250 41-391 118-407 (695)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.3E-09 4.6E-14 100.8 27.6 238 106-422 20-299 (314)
197 3sjl_D Methylamine dehydrogena 99.3 1.7E-09 5.9E-14 102.3 26.9 268 65-429 58-370 (386)
198 3g4e_A Regucalcin; six bladed 99.3 5.6E-09 1.9E-13 96.3 29.8 224 108-409 17-259 (297)
199 1qks_A Cytochrome CD1 nitrite 99.3 6.8E-09 2.3E-13 104.2 31.6 238 116-422 167-421 (567)
200 2qc5_A Streptogramin B lactona 99.3 3.6E-08 1.2E-12 90.2 33.6 276 41-420 17-298 (300)
201 2z2n_A Virginiamycin B lyase; 99.3 2.1E-08 7.3E-13 91.7 31.8 234 104-421 15-254 (299)
202 3c75_H MADH, methylamine dehyd 99.2 1.8E-09 6.1E-14 104.0 24.2 266 66-428 99-408 (426)
203 3hrp_A Uncharacterized protein 99.2 1.1E-08 3.7E-13 98.9 27.6 244 105-420 132-408 (409)
204 1xip_A Nucleoporin NUP159; bet 99.2 4.8E-10 1.6E-14 106.5 17.6 143 105-336 39-192 (388)
205 2qe8_A Uncharacterized protein 99.2 2.6E-09 8.8E-14 100.8 22.3 274 44-419 17-318 (343)
206 1rwi_B Serine/threonine-protei 99.2 6.3E-09 2.1E-13 94.1 23.5 237 45-381 25-265 (270)
207 3iuj_A Prolyl endopeptidase; h 99.1 1E-08 3.5E-13 106.2 25.7 244 100-426 125-409 (693)
208 2ghs_A AGR_C_1268P; regucalcin 99.1 6.9E-08 2.4E-12 90.2 29.2 222 108-409 53-289 (326)
209 1xip_A Nucleoporin NUP159; bet 99.1 1.5E-09 5.2E-14 103.0 17.4 154 45-224 39-193 (388)
210 3dr2_A Exported gluconolactona 99.1 5.8E-08 2E-12 89.7 26.7 225 108-417 49-302 (305)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 1.1E-07 3.7E-12 87.9 28.4 247 42-380 16-299 (314)
212 3g4e_A Regucalcin; six bladed 99.1 2.7E-07 9.3E-12 84.9 29.4 233 39-368 8-259 (297)
213 1yr2_A Prolyl oligopeptidase; 99.1 1.6E-08 5.4E-13 105.6 22.5 157 41-222 160-350 (741)
214 2qc5_A Streptogramin B lactona 99.0 7.8E-07 2.7E-11 81.2 30.7 233 105-421 21-259 (300)
215 1mda_H Methylamine dehydrogena 99.0 3E-08 1E-12 93.8 20.0 280 118-435 34-360 (368)
216 3hrp_A Uncharacterized protein 99.0 3.7E-07 1.3E-11 88.1 27.4 250 44-377 131-407 (409)
217 3iuj_A Prolyl endopeptidase; h 99.0 7.1E-08 2.4E-12 99.8 22.8 158 41-222 126-314 (693)
218 1kb0_A Quinohemoprotein alcoho 99.0 1.7E-07 5.7E-12 96.5 25.1 54 371-425 457-510 (677)
219 1yiq_A Quinohemoprotein alcoho 98.9 4.9E-07 1.7E-11 93.2 27.8 55 371-426 455-509 (689)
220 2hz6_A Endoplasmic reticulum t 98.9 2.4E-09 8.2E-14 102.1 9.1 204 115-405 8-217 (369)
221 2ghs_A AGR_C_1268P; regucalcin 98.9 3E-06 1E-10 79.0 29.7 151 43-221 48-209 (326)
222 2hz6_A Endoplasmic reticulum t 98.9 5.3E-10 1.8E-14 106.6 2.7 143 56-224 9-151 (369)
223 2mad_H Methylamine dehydrogena 98.9 1.7E-05 6E-10 75.3 33.9 256 47-387 69-357 (373)
224 3q7m_A Lipoprotein YFGL, BAMB; 98.8 6.6E-06 2.3E-10 78.1 30.1 279 57-425 54-340 (376)
225 3sjl_D Methylamine dehydrogena 98.8 1.7E-06 5.8E-11 81.8 23.7 234 113-425 41-323 (386)
226 2ece_A 462AA long hypothetical 98.8 5.5E-06 1.9E-10 79.2 26.6 222 115-410 94-399 (462)
227 2qe8_A Uncharacterized protein 98.8 1.1E-07 3.6E-12 89.6 14.8 227 105-424 18-280 (343)
228 1kb0_A Quinohemoprotein alcoho 98.8 4E-06 1.4E-10 86.2 27.1 157 56-229 128-353 (677)
229 3q7m_A Lipoprotein YFGL, BAMB; 98.7 3.3E-05 1.1E-09 73.2 28.9 258 57-419 104-375 (376)
230 3c75_H MADH, methylamine dehyd 98.6 1.9E-05 6.4E-10 76.0 26.3 258 48-387 122-409 (426)
231 1yiq_A Quinohemoprotein alcoho 98.6 1.6E-05 5.6E-10 81.8 26.9 79 325-408 454-534 (689)
232 1kv9_A Type II quinohemoprotei 98.6 1.3E-05 4.4E-10 82.3 25.5 54 371-425 438-491 (668)
233 3dr2_A Exported gluconolactona 98.6 4.5E-06 1.5E-10 76.9 19.0 162 183-422 37-224 (305)
234 1fwx_A Nitrous oxide reductase 98.5 5.4E-06 1.8E-10 81.9 19.3 264 115-426 100-435 (595)
235 3nol_A Glutamine cyclotransfer 98.5 2.1E-05 7.3E-10 69.6 21.1 113 108-228 47-161 (262)
236 2ece_A 462AA long hypothetical 98.5 2E-05 7E-10 75.2 20.4 189 159-421 95-351 (462)
237 3hxj_A Pyrrolo-quinoline quino 98.4 4.5E-05 1.5E-09 70.5 22.4 218 116-423 107-325 (330)
238 2iwa_A Glutamine cyclotransfer 98.4 8.9E-05 3E-09 66.3 23.1 195 107-378 24-235 (266)
239 3mbr_X Glutamine cyclotransfer 98.3 0.00019 6.3E-09 63.0 22.4 113 108-228 25-139 (243)
240 2iwa_A Glutamine cyclotransfer 98.3 0.00028 9.5E-09 63.1 23.8 205 137-422 10-237 (266)
241 1mda_H Methylamine dehydrogena 98.3 2.7E-05 9.2E-10 73.5 18.1 287 56-401 32-366 (368)
242 3hxj_A Pyrrolo-quinoline quino 98.3 1.2E-05 4.2E-10 74.4 15.7 259 48-421 24-283 (330)
243 3nok_A Glutaminyl cyclase; bet 98.3 0.0002 6.8E-09 63.5 21.7 191 137-410 44-253 (268)
244 1npe_A Nidogen, entactin; glyc 98.3 0.00091 3.1E-08 59.9 26.9 219 106-404 38-263 (267)
245 1npe_A Nidogen, entactin; glyc 98.3 0.0015 5.1E-08 58.4 27.5 221 126-426 10-242 (267)
246 1fwx_A Nitrous oxide reductase 98.2 6.1E-05 2.1E-09 74.5 18.9 147 56-222 101-308 (595)
247 2ad6_A Methanol dehydrogenase 98.2 0.001 3.4E-08 66.9 27.7 71 116-187 115-193 (571)
248 3nok_A Glutaminyl cyclase; bet 98.2 0.00012 4.1E-09 64.8 17.5 112 108-228 59-170 (268)
249 2fp8_A Strictosidine synthase; 98.1 0.0026 8.8E-08 58.7 25.9 111 307-423 187-314 (322)
250 1w6s_A Methanol dehydrogenase 98.1 0.0015 5.3E-08 65.7 25.9 68 119-187 124-199 (599)
251 2p4o_A Hypothetical protein; p 98.0 0.007 2.4E-07 55.3 27.3 152 44-221 32-197 (306)
252 3v65_B Low-density lipoprotein 98.0 0.0046 1.6E-07 58.7 26.7 229 124-430 94-326 (386)
253 2ad6_A Methanol dehydrogenase 98.0 0.0098 3.3E-07 59.6 29.4 80 324-408 442-523 (571)
254 1flg_A Protein (quinoprotein e 97.9 0.0065 2.2E-07 61.0 27.5 54 371-425 466-519 (582)
255 3nol_A Glutamine cyclotransfer 97.9 0.0018 6E-08 57.4 20.4 162 41-230 38-209 (262)
256 3v64_C Agrin; beta propeller, 97.9 0.016 5.5E-07 54.1 29.6 227 124-428 51-281 (349)
257 1k3i_A Galactose oxidase precu 97.9 0.00066 2.2E-08 69.5 19.2 101 309-411 403-530 (656)
258 3mbr_X Glutamine cyclotransfer 97.8 0.0069 2.3E-07 53.0 21.8 163 41-230 16-187 (243)
259 4a2l_A BT_4663, two-component 97.7 0.065 2.2E-06 56.0 35.5 284 46-425 133-439 (795)
260 3tc9_A Hypothetical hydrolase; 97.6 0.031 1.1E-06 53.8 25.7 112 106-222 139-257 (430)
261 4a2l_A BT_4663, two-component 97.6 0.088 3E-06 54.9 37.4 282 46-425 175-483 (795)
262 1kv9_A Type II quinohemoprotei 97.6 0.0041 1.4E-07 63.7 19.5 77 109-186 235-340 (668)
263 1ijq_A LDL receptor, low-densi 97.5 0.05 1.7E-06 49.8 29.4 221 126-425 10-241 (316)
264 4hw6_A Hypothetical protein, I 97.5 0.046 1.6E-06 52.6 25.4 114 106-223 141-260 (433)
265 3v65_B Low-density lipoprotein 97.5 0.07 2.4E-06 50.5 26.5 216 106-400 118-338 (386)
266 1flg_A Protein (quinoprotein e 97.5 0.11 3.8E-06 52.0 29.1 80 324-408 464-545 (582)
267 1w6s_A Methanol dehydrogenase 97.5 0.11 3.9E-06 52.0 29.7 79 324-407 451-531 (599)
268 2p4o_A Hypothetical protein; p 97.4 0.057 2E-06 49.1 23.6 204 139-421 25-241 (306)
269 3p5b_L Low density lipoprotein 97.4 0.098 3.4E-06 49.7 29.7 234 118-430 85-328 (400)
270 2fp8_A Strictosidine synthase; 97.4 0.065 2.2E-06 49.0 23.2 110 307-422 128-269 (322)
271 1k3i_A Galactose oxidase precu 97.2 0.033 1.1E-06 56.8 21.4 52 171-223 220-275 (656)
272 3v9f_A Two-component system se 97.2 0.26 8.9E-06 51.2 33.0 287 44-424 211-526 (781)
273 3kya_A Putative phosphatase; s 97.2 0.18 6.1E-06 49.1 25.5 112 107-221 142-277 (496)
274 3m0c_C LDL receptor, low-densi 97.2 0.27 9.4E-06 51.0 28.0 223 124-424 402-634 (791)
275 3sov_A LRP-6, low-density lipo 97.2 0.11 3.8E-06 47.6 22.6 214 106-399 37-257 (318)
276 3sov_A LRP-6, low-density lipo 97.2 0.13 4.5E-06 47.1 26.2 227 125-429 12-245 (318)
277 3v64_C Agrin; beta propeller, 97.2 0.15 5.1E-06 47.4 29.4 215 106-399 75-294 (349)
278 3v9f_A Two-component system se 97.0 0.47 1.6E-05 49.3 34.6 292 44-425 258-571 (781)
279 1ijq_A LDL receptor, low-densi 96.9 0.25 8.5E-06 45.1 27.3 208 106-390 32-248 (316)
280 3m0c_C LDL receptor, low-densi 96.9 0.53 1.8E-05 48.8 28.2 114 106-221 426-545 (791)
281 4a0p_A LRP6, LRP-6, low-densit 96.8 0.49 1.7E-05 47.8 27.7 223 124-426 13-241 (628)
282 2xe4_A Oligopeptidase B; hydro 96.8 0.024 8.2E-07 58.8 16.2 113 308-422 224-354 (751)
283 1n7d_A LDL receptor, low-densi 96.8 0.0039 1.3E-07 64.1 9.7 92 307-402 542-636 (699)
284 1n7d_A LDL receptor, low-densi 96.8 0.008 2.7E-07 61.8 11.7 223 124-424 384-616 (699)
285 3p5b_L Low density lipoprotein 96.8 0.4 1.4E-05 45.4 30.3 218 105-399 113-339 (400)
286 2xe4_A Oligopeptidase B; hydro 96.7 0.19 6.4E-06 52.1 21.8 148 41-212 170-340 (751)
287 3amr_A 3-phytase; beta-propell 96.6 0.44 1.5E-05 43.9 23.7 113 307-421 130-262 (355)
288 2xzh_A Clathrin heavy chain 1; 96.6 0.41 1.4E-05 43.6 23.5 238 115-425 77-335 (365)
289 3tc9_A Hypothetical hydrolase; 96.1 0.36 1.2E-05 46.3 18.0 112 306-421 180-300 (430)
290 1bpo_A Protein (clathrin); cla 95.8 1.4 4.7E-05 41.9 24.7 235 115-422 76-331 (494)
291 4a0p_A LRP6, LRP-6, low-densit 95.6 2.1 7.3E-05 43.1 27.1 201 106-387 39-244 (628)
292 4hw6_A Hypothetical protein, I 95.6 1.6 5.6E-05 41.7 22.1 114 307-422 230-374 (433)
293 2p9w_A MAL S 1 allergenic prot 95.5 1.1 3.7E-05 40.9 17.7 110 108-220 17-166 (334)
294 3qqz_A Putative uncharacterize 95.2 1.4 4.9E-05 38.6 20.8 168 184-423 20-205 (255)
295 3s94_A LRP-6, low-density lipo 94.8 3.9 0.00013 41.1 24.0 227 125-429 17-250 (619)
296 3qqz_A Putative uncharacterize 94.5 2.2 7.7E-05 37.4 25.1 73 147-223 28-101 (255)
297 3kya_A Putative phosphatase; s 94.4 1.4 4.9E-05 42.8 16.2 156 46-221 141-340 (496)
298 1xi4_A Clathrin heavy chain; a 94.3 1.2 4.2E-05 48.6 16.5 102 115-222 76-188 (1630)
299 3amr_A 3-phytase; beta-propell 94.1 1.6 5.6E-05 40.1 15.1 111 115-228 141-270 (355)
300 2vpj_A Kelch-like protein 12; 94.0 3.2 0.00011 37.0 21.2 104 315-424 159-280 (301)
301 3pbp_A Nucleoporin NUP82; beta 93.8 4.7 0.00016 38.1 17.7 103 115-222 31-158 (452)
302 2p9w_A MAL S 1 allergenic prot 93.4 4.5 0.00015 36.8 18.4 161 45-221 14-214 (334)
303 3pbp_A Nucleoporin NUP82; beta 92.3 2.8 9.5E-05 39.7 13.8 108 312-424 28-160 (452)
304 3sre_A PON1, serum paraoxonase 92.1 7.3 0.00025 35.9 19.2 114 307-421 114-251 (355)
305 2ism_A Putative oxidoreductase 92.0 1.5 5E-05 40.7 11.9 100 306-410 32-153 (352)
306 3ii7_A Kelch-like protein 7; p 91.4 7.5 0.00026 34.6 20.0 98 118-222 14-127 (306)
307 2xbg_A YCF48-like protein; pho 90.9 9 0.00031 34.7 17.9 157 35-219 154-319 (327)
308 3s94_A LRP-6, low-density lipo 90.6 15 0.00051 36.8 35.2 354 44-423 84-468 (619)
309 2xn4_A Kelch-like protein 2; s 89.1 12 0.0004 33.2 21.2 105 315-425 155-279 (302)
310 4asc_A Kelch repeat and BTB do 88.6 13 0.00044 33.2 17.6 104 315-424 148-279 (315)
311 3sre_A PON1, serum paraoxonase 88.4 15 0.00053 33.8 21.5 108 306-421 166-297 (355)
312 3a9g_A Putative uncharacterize 88.2 3.7 0.00013 37.9 11.0 101 306-410 30-153 (354)
313 1cru_A Protein (soluble quinop 86.8 7 0.00024 37.5 12.4 104 306-411 28-163 (454)
314 3das_A Putative oxidoreductase 86.8 7 0.00024 36.0 11.8 105 305-411 32-159 (347)
315 1cru_A Protein (soluble quinop 86.6 23 0.00078 33.8 20.8 30 190-221 26-56 (454)
316 2vpj_A Kelch-like protein 12; 85.9 18 0.0006 31.9 14.6 104 115-223 159-279 (301)
317 2g8s_A Glucose/sorbosone dehyd 85.9 21 0.00071 32.7 17.5 29 191-220 18-46 (353)
318 2xbg_A YCF48-like protein; pho 85.8 20 0.00067 32.4 34.5 111 306-420 206-320 (327)
319 2ism_A Putative oxidoreductase 85.6 22 0.00074 32.6 23.7 99 107-210 34-153 (352)
320 3das_A Putative oxidoreductase 85.3 22 0.00077 32.5 18.1 37 185-222 26-62 (347)
321 1zgk_A Kelch-like ECH-associat 84.3 22 0.00074 31.6 19.3 104 315-424 168-289 (308)
322 2xn4_A Kelch-like protein 2; s 84.3 13 0.00043 32.9 12.3 102 115-223 155-277 (302)
323 1tl2_A L10, protein (tachylect 83.3 8 0.00027 33.0 9.5 112 306-423 42-164 (236)
324 2woz_A Kelch repeat and BTB do 82.1 27 0.00093 31.0 18.6 105 314-424 157-289 (318)
325 3a9g_A Putative uncharacterize 81.2 33 0.0011 31.4 18.1 28 190-219 28-55 (354)
326 2be1_A Serine/threonine-protei 80.4 7.9 0.00027 35.4 9.2 112 117-230 11-138 (339)
327 2g8s_A Glucose/sorbosone dehyd 80.2 12 0.0004 34.4 10.6 104 305-411 18-149 (353)
328 1zgk_A Kelch-like ECH-associat 74.2 33 0.0011 30.3 11.7 102 115-223 168-288 (308)
329 2be1_A Serine/threonine-protei 69.6 19 0.00063 33.0 8.7 115 57-187 11-138 (339)
330 4asc_A Kelch repeat and BTB do 69.3 44 0.0015 29.6 11.3 102 115-223 148-278 (315)
331 2wg3_C Hedgehog-interacting pr 67.2 49 0.0017 31.6 11.5 30 305-334 14-44 (463)
332 3ii7_A Kelch-like protein 7; p 65.4 70 0.0024 28.0 19.2 104 315-424 101-227 (306)
333 4gq2_M Nucleoporin NUP120; bet 63.7 13 0.00045 39.3 7.4 39 105-144 237-275 (950)
334 3f7f_A Nucleoporin NUP120; nuc 63.7 13 0.00043 37.7 6.7 30 115-144 230-259 (729)
335 3ei3_A DNA damage-binding prot 63.3 1.7E+02 0.0058 31.7 35.2 90 127-222 493-591 (1158)
336 2uvk_A YJHT; unknown function, 59.6 98 0.0034 27.7 16.8 53 372-426 286-346 (357)
337 3sbq_A Nitrous-oxide reductase 53.3 61 0.0021 31.9 9.2 102 306-409 324-452 (638)
338 4fhn_B Nucleoporin NUP120; pro 52.9 12 0.00042 40.5 5.0 39 106-145 240-278 (1139)
339 2uvk_A YJHT; unknown function, 52.0 1.3E+02 0.0045 26.9 12.2 52 171-225 286-345 (357)
340 3sbq_A Nitrous-oxide reductase 50.6 49 0.0017 32.6 8.0 30 193-222 325-354 (638)
341 2zwa_A Leucine carboxyl methyl 50.4 2.1E+02 0.0072 28.8 20.9 105 115-223 397-523 (695)
342 2woz_A Kelch repeat and BTB do 45.9 1.1E+02 0.0037 27.0 9.6 103 115-222 109-231 (318)
343 2xzh_A Clathrin heavy chain 1; 45.6 1.8E+02 0.0061 26.5 14.0 107 312-425 74-192 (365)
344 4gq2_M Nucleoporin NUP120; bet 45.3 32 0.0011 36.4 6.5 38 192-230 237-274 (950)
345 1tl2_A L10, protein (tachylect 44.4 88 0.003 26.6 7.8 68 353-424 43-118 (236)
346 3ei3_A DNA damage-binding prot 41.8 3.7E+02 0.013 29.1 32.4 111 307-422 834-957 (1158)
347 4a9v_A PHOX; hydrolase, beta-p 41.1 91 0.0031 30.7 8.4 59 351-409 476-548 (592)
348 3f7f_A Nucleoporin NUP120; nuc 33.9 53 0.0018 33.3 5.6 37 192-231 223-259 (729)
349 4fhn_B Nucleoporin NUP120; pro 33.6 33 0.0011 37.1 4.5 38 193-231 240-277 (1139)
350 2zwa_A Leucine carboxyl methyl 31.7 2.1E+02 0.0073 28.8 10.0 106 115-223 451-578 (695)
351 3zwu_A Alkaline phosphatase PH 26.4 4.7E+02 0.016 25.7 13.3 57 353-409 478-548 (592)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.9e-44 Score=337.59 Aligned_cols=289 Identities=20% Similarity=0.309 Sum_probs=242.6
Q ss_pred eecCCCCceeEEEccCC---CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 38 IVSPHKGSINSLQVDLT---EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
.+.+|.+.|++++|+|+ ++++|+|||.|++|+|||+...... . .....+|..+|.++.+++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~------------~---~~~l~gh~~~v~~~~~~~- 90 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD------------L---QWSLEGHQLGVVSVDISH- 90 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE------------E---EEEECCCSSCEEEEEECS-
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee------------e---eeeeccCCCCEEEEEECC-
Confidence 34689999999999864 3568999999999999998643210 0 112458999999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v 193 (441)
++.+++|++.|++|++||+.+++.+..+.. ...+..+.++|++ .+|++|+.|+.|++||+++++....+..|...|
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg---~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v 167 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS---QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI 167 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS---SEEEEECTTSEEEEEETTTCSEEEEEECSSSCE
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC---CEEEEEcCCCcEEEEEcCCCceeEEecCCCceE
Confidence 688999999999999999999998887764 3456677888754 489999999999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
.+++|+|+++ +|++|+.|+.|++||+++++++..+
T Consensus 168 ~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~~~~~-------------------------------------------- 202 (321)
T 3ow8_A 168 LSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTL-------------------------------------------- 202 (321)
T ss_dssp EEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEE--------------------------------------------
T ss_pred EEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEE--------------------------------------------
Confidence 9999999998 5789999999999999876544332
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
.+|..+|++++|+|++++|++|+.|++|++||+.+++.. .....+....
T Consensus 203 ---------------------------~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~h~~~v 251 (321)
T 3ow8_A 203 ---------------------------EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA----GTLSGHASWV 251 (321)
T ss_dssp ---------------------------CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE----EEECCCSSCE
T ss_pred ---------------------------cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee----EEEcCCCCce
Confidence 246678999999999999999999999999999876532 2233344556
Q ss_pred eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
..++++|++..+++++. +.+++||+.+++++.++.+|.+.|++++|+|++++|+|++.|++|+||+.+
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 78899999998888765 689999999999999999999999999999999999999999999999974
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.9e-43 Score=336.28 Aligned_cols=287 Identities=16% Similarity=0.340 Sum_probs=237.2
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
...+.+|.+.|++++|+| ++++|+||+.||+|+|||+.++... .....|...|.++.++| +
T Consensus 48 ~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~-----------------~~~~~~~~~v~~~~~s~-~ 108 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKV-----------------HAIPLRSSWVMTCAYAP-S 108 (340)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEE-----------------EEEECSSSCEEEEEECT-T
T ss_pred heeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcc-----------------eEeecCCccEEEEEECC-C
Confidence 456789999999999996 5789999999999999998765421 11236888899999987 7
Q ss_pred CCEEEEEeCCCcEEEEECCCCe----EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTR----VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR 190 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~ 190 (441)
+.+|++|+.|++|++||+.++. ....+. +.+.+..+.+.+.. .+++++.|+.|++||+++++.+..+.+|.
T Consensus 109 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~l~s~s~d~~i~~wd~~~~~~~~~~~~h~ 184 (340)
T 1got_B 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVTSSGDTTCALWDIETGQQTTTFTGHT 184 (340)
T ss_dssp SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT----EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC----cEEEEECCCcEEEEECCCCcEEEEEcCCC
Confidence 8899999999999999998753 333333 34567777777642 48889999999999999999999999999
Q ss_pred CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG 270 (441)
Q Consensus 191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (441)
+.|.+++|+|+++ +|++|+.|++|++||++++.+...+
T Consensus 185 ~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~----------------------------------------- 222 (340)
T 1got_B 185 GDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTF----------------------------------------- 222 (340)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEE-----------------------------------------
T ss_pred CceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEE-----------------------------------------
Confidence 9999999999987 5799999999999999876543322
Q ss_pred ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 350 (441)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~ 350 (441)
.+|...|++++|+|++.+|++|+.|++|++||+.+++... .+.. ....
T Consensus 223 ------------------------------~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~-~~~~ 270 (340)
T 1got_B 223 ------------------------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-TYSH-DNII 270 (340)
T ss_dssp ------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECC-TTCC
T ss_pred ------------------------------cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE-EEcc-CCcc
Confidence 3577789999999999999999999999999998765321 1110 0011
Q ss_pred CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 351 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
.....++++|++.++++++. +.+++||+.+++.+.++.+|.++|.+++|+|||++|+|||.|++|+||+
T Consensus 271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 23567889999999888765 6899999999999999999999999999999999999999999999996
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.6e-44 Score=347.84 Aligned_cols=286 Identities=18% Similarity=0.310 Sum_probs=242.0
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
..+.+|.+.|++++|+| ++.+|+||+.||+|+|||+.++... ....+|...|.++.|++ ++
T Consensus 102 ~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~-----------------~~l~~h~~~V~~v~~~~-~~ 162 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFE-----------------RTLKGHTDSVQDISFDH-SG 162 (410)
T ss_dssp CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCC-----------------EEECCCSSCEEEEEECT-TS
T ss_pred EeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEE-----------------EEEeccCCcEEEEEEcC-CC
Confidence 35679999999999997 5779999999999999999876421 12358999999999987 78
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~ 195 (441)
.+|+||+.|++|++||+.+++++..+. +.+.+.++.++|.+ .+|++|+.|+.|++||++++.++.++.+|...|.+
T Consensus 163 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~---~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~ 239 (410)
T 1vyh_C 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG---DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239 (410)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC---CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEE
Confidence 899999999999999999988877665 34568889998854 47899999999999999999999999999999999
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
+.|+|++. +|++|+.|++|++||++++.+...+
T Consensus 240 ~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~---------------------------------------------- 272 (410)
T 1vyh_C 240 VRPNQDGT-LIASCSNDQTVRVWVVATKECKAEL---------------------------------------------- 272 (410)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTTCCEEEEE----------------------------------------------
T ss_pred EEECCCCC-EEEEEcCCCeEEEEECCCCceeeEe----------------------------------------------
Confidence 99999987 5799999999999999876554433
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEccC--------------------CCEEEEeecCCcEEEeeCCC
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED--------------------GMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--------------------g~~l~sgs~D~~i~~wd~~~ 335 (441)
.+|...|.+++|+|+ |.+|++|+.|++|++||+.+
T Consensus 273 -------------------------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~ 327 (410)
T 1vyh_C 273 -------------------------REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327 (410)
T ss_dssp -------------------------CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred -------------------------cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence 234455666666664 77999999999999999998
Q ss_pred CCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc
Q 013545 336 GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ 414 (441)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~ 414 (441)
++.. .....+......+++++++.++++++. +.+++||+.+++++.++.+|...|++++|+|++.+|+|||.|++
T Consensus 328 ~~~~----~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~ 403 (410)
T 1vyh_C 328 GMCL----MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403 (410)
T ss_dssp TEEE----EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred CceE----EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 7532 233334555667899999998888765 68999999999999999999999999999999999999999999
Q ss_pred EEEeCC
Q 013545 415 ILVWCP 420 (441)
Q Consensus 415 i~vW~~ 420 (441)
|++|+.
T Consensus 404 i~vW~~ 409 (410)
T 1vyh_C 404 VKVWEC 409 (410)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999986
No 4
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.6e-43 Score=330.67 Aligned_cols=295 Identities=20% Similarity=0.322 Sum_probs=240.6
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
...+.+|.+.|++|+|+|.++++|+|||.|++|++||+...... .... .....+|...|.++.+++ +
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~-------~~~~-----~~~~~~h~~~v~~~~~s~-d 76 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-------FGVP-----VRSFKGHSHIVQDCTLTA-D 76 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-------EEEE-----EEEEECCSSCEEEEEECT-T
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-------cccc-----ceEEeCCcccEEEEEECC-C
Confidence 34578999999999999866689999999999999998643210 0001 123458999999999987 7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~ 194 (441)
+.+|+||+.|++|++||+.+++.+..+. +.+.+.++.+++.. .+|++|+.|+.|++||++ +..+..+.+|...|.
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~ 152 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA---SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS---CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEE
Confidence 8999999999999999999999888776 45678888888753 489999999999999996 556778899999999
Q ss_pred EEEEecCCC-----cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545 195 TVEWSTSSE-----WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN 269 (441)
Q Consensus 195 ~v~fsp~~~-----~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (441)
++.|+|..+ .++++++.|++|++||+++..+...
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----------------------------------------- 191 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD----------------------------------------- 191 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE-----------------------------------------
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee-----------------------------------------
Confidence 999998632 2689999999999999976432211
Q ss_pred CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEec
Q 013545 270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 349 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~ 349 (441)
..+|...|++++|+|+|++|++|+.|++|++||+.+++... ... .
T Consensus 192 ------------------------------~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~----~~~-~ 236 (319)
T 3frx_A 192 ------------------------------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY----TLS-A 236 (319)
T ss_dssp ------------------------------ECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE----EEE-C
T ss_pred ------------------------------ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE----Eec-C
Confidence 23577889999999999999999999999999999865321 212 2
Q ss_pred cCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeec--------ccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 350 TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR--------GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~--------gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
......++++|++..++++....+++|++..+.....+. .|...+.+++|||||++|++|+.|++|+||++.
T Consensus 237 ~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 237 QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp CSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 355678999999999998888899999998877666553 456789999999999999999999999999986
Q ss_pred CC
Q 013545 422 RH 423 (441)
Q Consensus 422 ~~ 423 (441)
+.
T Consensus 317 t~ 318 (319)
T 3frx_A 317 TA 318 (319)
T ss_dssp EC
T ss_pred ec
Confidence 53
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-42 Score=332.57 Aligned_cols=289 Identities=18% Similarity=0.310 Sum_probs=235.4
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
...+.+|.+.|++++|+| ++++|+|||.||+|+|||..++... .....|...|.++.|+| +
T Consensus 57 ~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~-----------------~~~~~~~~~v~~~~~sp-~ 117 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKE-----------------HAVTMPCTWVMACAYAP-S 117 (354)
T ss_dssp EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE-----------------EEEECSSSCCCEEEECT-T
T ss_pred EEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcc-----------------eEEecCCCCEEEEEECC-C
Confidence 456789999999999997 5789999999999999998765321 01125777899999987 7
Q ss_pred CCEEEEEeCCCcEEEEECCCCe------EEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTR------VVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG 188 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~ 188 (441)
+.+|++|+.|+++++|++.... ....+ .+.+.+..+.+++.. ..|++++.|+.|++||+++++++..+.+
T Consensus 118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~s~D~~v~lwd~~~~~~~~~~~~ 194 (354)
T 2pbi_B 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD---MQILTASGDGTCALWDVESGQLLQSFHG 194 (354)
T ss_dssp SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC---CEEEEEeCCCcEEEEeCCCCeEEEEEcC
Confidence 8999999999999999986431 12222 345667888888753 4788999999999999999999999999
Q ss_pred CCCCeEEEEEecCC-CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCC
Q 013545 189 HRDGIMTVEWSTSS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSAN 267 (441)
Q Consensus 189 h~~~v~~v~fsp~~-~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (441)
|...|.+++|+|+. ..+|++|+.||+|++||++++.+...+
T Consensus 195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~-------------------------------------- 236 (354)
T 2pbi_B 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF-------------------------------------- 236 (354)
T ss_dssp CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE--------------------------------------
T ss_pred CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------------------------
Confidence 99999999998852 136899999999999999876554332
Q ss_pred CCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEE
Q 013545 268 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 347 (441)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~ 347 (441)
.+|...|++++|+|++.+|++|+.|++|++||+.+.+... .+.. .
T Consensus 237 ---------------------------------~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~-~~~~-~ 281 (354)
T 2pbi_B 237 ---------------------------------ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA-IYSK-E 281 (354)
T ss_dssp ---------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECC-T
T ss_pred ---------------------------------cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEcC-C
Confidence 2467789999999999999999999999999998764211 1110 0
Q ss_pred eccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 348 LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
........+++++++.++++++. +.+++||+.+++.+..+.+|.++|++++|+|||++|+||+.|++|+||+
T Consensus 282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 01123456888999999888765 6899999999999999999999999999999999999999999999996
No 6
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=330.17 Aligned_cols=362 Identities=36% Similarity=0.694 Sum_probs=276.9
Q ss_pred cccccccCcCCchhhhhhhhccccceecccceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCc
Q 013545 5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGH 84 (441)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 84 (441)
+.+|+.+.-.+..+.......++..++......++.+|.+.|++++|+|.++++|++|+.||+|+|||+.++.....
T Consensus 5 l~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--- 81 (408)
T 4a11_B 5 LSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY--- 81 (408)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC---
T ss_pred ccccccCccCccceeeccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce---
Confidence 44555665566656666666677777777777888999999999999974678999999999999999987653211
Q ss_pred eeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEE
Q 013545 85 IAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIA 164 (441)
Q Consensus 85 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 164 (441)
...............+|...|.++.|+|.++.+|++++.|++|++||+.+++.+..+.....+..+.+.+...+..+++
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T 4a11_B 82 -YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVA 160 (408)
T ss_dssp -EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEE
T ss_pred -EeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEE
Confidence 0111111222233457999999999998778899999999999999999999999888888899999998877777999
Q ss_pred EEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCcc
Q 013545 165 AGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLL 243 (441)
Q Consensus 165 s~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~ 243 (441)
+++.|+.|++||+++++.+..+.+|...|.+++|+|+++++|++++.||.|++||++... ++..++......
T Consensus 161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------- 233 (408)
T 4a11_B 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK------- 233 (408)
T ss_dssp EEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS-------
T ss_pred EEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc-------
Confidence 999999999999999999999999999999999999998778999999999999998653 222221100000
Q ss_pred cccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee
Q 013545 244 KRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG 323 (441)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 323 (441)
..........|...|.+++|+|++.+|++++
T Consensus 234 -------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 234 -------------------------------------------------SQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp -------------------------------------------------CCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred -------------------------------------------------ceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 0000011246788999999999999999999
Q ss_pred cCCcEEEeeCCCCCceeeeeeeEEe--ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcC
Q 013545 324 SDSRIRLWDVESGRNTLVNFETVRL--QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 401 (441)
Q Consensus 324 ~D~~i~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp 401 (441)
.|++|++||+.+++........... ................++....+.+++||+.+++.+..+.+|.+.|.+++|+|
T Consensus 265 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 344 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS 344 (408)
T ss_dssp TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence 9999999999987643211111000 11112223333445566666678999999999999999999999999999999
Q ss_pred CCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 402 QDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 402 d~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
++++|+||+.|+.|++|++.+....
T Consensus 345 ~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 345 NFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp TTTEEEEEETTSCEEEEEECC----
T ss_pred CCCEEEEECCCCeEEEEeCCCCCcc
Confidence 9999999999999999999987754
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.5e-43 Score=338.90 Aligned_cols=296 Identities=19% Similarity=0.338 Sum_probs=235.0
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
...+.+|.+.|++++|+| ++++|+|||.||+|+|||+.++... ....+|...|.+++|+| +
T Consensus 59 ~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~-----------------~~~~~h~~~v~~~~~s~-~ 119 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKT-----------------HAIKLHCPWVMECAFAP-N 119 (380)
T ss_dssp EEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEE-----------------EEEECCCTTCCCCEECT-T
T ss_pred eecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccc-----------------eEEecCCCCEEEEEECC-C
Confidence 345789999999999997 5789999999999999998765321 11247888899999987 7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeE-------EEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee-
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRV-------VMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL- 186 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l- 186 (441)
+.+|++|+.|++|++||+.+... ...+ .+.+.+..+.+.+.. ...|++|+.|+.|++||+++++.+..+
T Consensus 120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~--~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 197 (380)
T 3iz6_a 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ--ETRLITGSGDQTCVLWDVTTGQRISIFG 197 (380)
T ss_dssp SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS--SSCEEEECTTSCEEEECTTTCCEEEEEC
T ss_pred CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCC--CCEEEEECCCCcEEEEEcCCCcEEEEee
Confidence 89999999999999999865321 1111 123445666666643 346899999999999999999988766
Q ss_pred ----cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC-ceeeEeccCCccccCCCCcccccccccCccCCcCCCCC
Q 013545 187 ----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAP 261 (441)
Q Consensus 187 ----~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (441)
.+|...|.++.|+|.+..+|++|+.|++|++||++.. .++.
T Consensus 198 ~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~---------------------------------- 243 (380)
T 3iz6_a 198 SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR---------------------------------- 243 (380)
T ss_dssp CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE----------------------------------
T ss_pred cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE----------------------------------
Confidence 6899999999998844457899999999999998732 1111
Q ss_pred CcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee
Q 013545 262 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV 341 (441)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~ 341 (441)
...+|.+.|++|+|+|++.+|+||+.|++|++||+.+++....
T Consensus 244 -------------------------------------~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 244 -------------------------------------TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp -------------------------------------EECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred -------------------------------------EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence 1246888999999999999999999999999999998753211
Q ss_pred eeeeEE----eccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeee----cccccceEEEEEcCCCCeEEEeecC
Q 013545 342 NFETVR----LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF----RGHYEYVNCCCFSSQDQELYTGGND 412 (441)
Q Consensus 342 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l----~gh~~~v~~v~fspd~~~l~s~s~D 412 (441)
+.... ........+++++++.++++++. +.+++||+.+++....+ .+|.+.|++++|+|||++|+|||.|
T Consensus 287 -~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 365 (380)
T 3iz6_a 287 -YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD 365 (380)
T ss_dssp -ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT
T ss_pred -ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCC
Confidence 11100 00112457899999999988865 68999999999888776 7899999999999999999999999
Q ss_pred CcEEEeCCCCCC
Q 013545 413 RQILVWCPSRHI 424 (441)
Q Consensus 413 ~~i~vW~~~~~~ 424 (441)
++|+||+++.++
T Consensus 366 ~~i~iW~~~~~~ 377 (380)
T 3iz6_a 366 KNLKIWAFSGHR 377 (380)
T ss_dssp SCEEEEECCSSS
T ss_pred CCEEEEecCCCc
Confidence 999999998765
No 8
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.1e-41 Score=322.61 Aligned_cols=298 Identities=19% Similarity=0.301 Sum_probs=234.1
Q ss_pred eeeecCCCCceeEEEc-----cCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEE
Q 013545 36 KEIVSPHKGSINSLQV-----DLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAI 110 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~-----s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 110 (441)
..++.||.+.|++++| ++.++++|+||+.|++|+|||+.+...... . ... .....+|...|.++.
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~---~--~~~-----~~~l~~h~~~V~~~~ 83 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY---F--GIP-----HKALTGHNHFVSDLA 83 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB---S--EEE-----EEEECCCSSCEEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc---c--ccc-----cchhccCCCceEEEE
Confidence 4567899999999999 655788999999999999999875432100 0 000 122458999999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee--eec
Q 013545 111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ--TLS 187 (441)
Q Consensus 111 ~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~--~l~ 187 (441)
+++ ++.+++||+.|++|++||+++++.+..+. +.+.+.++.++|++ .+|++++.|+.|++||+....... ...
T Consensus 84 ~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 159 (343)
T 2xzm_R 84 LSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN---RQILSAGAEREIKLWNILGECKFSSAEKE 159 (343)
T ss_dssp ECS-STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST---TEEEEEETTSCEEEEESSSCEEEECCTTT
T ss_pred ECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC---CEEEEEcCCCEEEEEeccCCceeeeeccc
Confidence 987 78899999999999999999999887776 45778999999864 478999999999999997443222 223
Q ss_pred CCCCCeEEEEEecCCC---------cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545 188 GHRDGIMTVEWSTSSE---------WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP 258 (441)
Q Consensus 188 ~h~~~v~~v~fsp~~~---------~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (441)
+|...|.+++|+|++. .+|++++.|++|++||.+. .+..
T Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~------------------------------- 207 (343)
T 2xzm_R 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRY------------------------------- 207 (343)
T ss_dssp SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEEE-------------------------------
T ss_pred CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ceeE-------------------------------
Confidence 7999999999999862 3689999999999999432 1111
Q ss_pred CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545 259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN 338 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~ 338 (441)
...+|...|++++|+|+|++|++|+.|++|++||+.....
T Consensus 208 ----------------------------------------~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~ 247 (343)
T 2xzm_R 208 ----------------------------------------TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247 (343)
T ss_dssp ----------------------------------------EEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred ----------------------------------------EEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 1245778899999999999999999999999999954332
Q ss_pred eeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEe--eec-----------ccccceEEEEEcCCCCe
Q 013545 339 TLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCL--TFR-----------GHYEYVNCCCFSSQDQE 405 (441)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~--~l~-----------gh~~~v~~v~fspd~~~ 405 (441)
....+ ........++++|++.+++++....+++|++.+++... ++. +|...|++++|+|+|++
T Consensus 248 ~~~~~----~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 323 (343)
T 2xzm_R 248 PQREF----DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK 323 (343)
T ss_dssp CSEEE----ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred cceee----cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence 21111 12334667899999988887777899999998776543 443 78899999999999999
Q ss_pred EEEeecCCcEEEeCCCCC
Q 013545 406 LYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 406 l~s~s~D~~i~vW~~~~~ 423 (441)
|++|+.|++|++|+..++
T Consensus 324 l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 324 LFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEETTSEEEEEEEEEE
T ss_pred EEEecCCceEEEEEEEcc
Confidence 999999999999997653
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.7e-41 Score=315.41 Aligned_cols=290 Identities=17% Similarity=0.279 Sum_probs=235.5
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
.+.+.+|.+.|++++|+| ++++|+||+.||+|+|||+.++... ....+|...|.++.|++ +
T Consensus 6 ~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~-----------------~~~~~~~~~v~~~~~~~-~ 66 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEV-----------------RSIQVTETPVRAGKFIA-R 66 (304)
T ss_dssp EEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEE-----------------EEEECCSSCEEEEEEEG-G
T ss_pred EEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcee-----------------EEeeccCCcEEEEEEeC-C
Confidence 456789999999999997 5789999999999999999765321 11236888999999987 6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCe
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGI 193 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v 193 (441)
+++|++|+.|++|++||+.+++++..+.. .+.+.++.++|.. .+|++|+.|+.|++||++++ .....+.+|...|
T Consensus 67 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v 143 (304)
T 2ynn_A 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV 143 (304)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC---CEEEEECCCCeEEEEECCCCcchhhhhcccCCcE
Confidence 88999999999999999999998887764 5678999999864 48999999999999999987 4557789999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
.+++|+|.+..+|++|+.|++|++||++...+...+
T Consensus 144 ~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~-------------------------------------------- 179 (304)
T 2ynn_A 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL-------------------------------------------- 179 (304)
T ss_dssp EEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE--------------------------------------------
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee--------------------------------------------
Confidence 999999965457899999999999998754221111
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc--CCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 351 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~ 351 (441)
..+|...+..++|+| ++.+|++|+.|++|++||+.+++. ...+..+..
T Consensus 180 --------------------------~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~----~~~~~~h~~ 229 (304)
T 2ynn_A 180 --------------------------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC----VATLEGHMS 229 (304)
T ss_dssp --------------------------ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE----EEEEECCSS
T ss_pred --------------------------ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc----ceeeCCCCC
Confidence 113445688888886 788999999999999999998653 223344455
Q ss_pred cceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCC--eEEEeecCCcEEEeCCCC
Q 013545 352 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ--ELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~--~l~s~s~D~~i~vW~~~~ 422 (441)
....++++|++..+++++. +.+++||+.++++..++.+|...+++++|+|+++ ++++|+.|+ +.+|++..
T Consensus 230 ~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 6667889999988888765 6899999999999999999999999999999885 477777555 56776654
No 10
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7e-41 Score=317.20 Aligned_cols=298 Identities=18% Similarity=0.307 Sum_probs=236.4
Q ss_pred ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
.+..+.||.+.|++|+|+|+++++|+|||.||+|+|||+.+..... .. ......+|...|.++.|+|
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~---------~~---~~~~l~~h~~~V~~~~~s~- 96 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY---------GI---PQRALRGHSHFVSDVVISS- 96 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS---------EE---EEEEECCCSSCEEEEEECT-
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc---------ce---eeEEEeCCCCCEEEEEECC-
Confidence 3456889999999999998777899999999999999997654210 00 0123458999999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-eeeecCCCCC
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDG 192 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~~~l~~h~~~ 192 (441)
++.+|++|+.|+.|++|+............. .......+.+. ..+|++++.|+.+++||+..... ...+.+|...
T Consensus 97 dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~ 173 (340)
T 4aow_A 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD---NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 173 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT---SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSC
T ss_pred CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeec---CccceeecCCCeEEEEEeCCCceEEEEeccccCc
Confidence 7899999999999999999988877665543 33444455543 34789999999999999987654 3456789999
Q ss_pred eEEEEEecCCC-cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 193 IMTVEWSTSSE-WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 193 v~~v~fsp~~~-~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
+.+++|++++. .++++++.|++|++||++++.+...
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~------------------------------------------- 210 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN------------------------------------------- 210 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE-------------------------------------------
T ss_pred ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE-------------------------------------------
Confidence 99999998754 3678999999999999987644322
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 351 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~ 351 (441)
..+|.++|++|+|+|++++|++|+.|++|++||+.+.+... ... ...
T Consensus 211 ----------------------------~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~----~~~-~~~ 257 (340)
T 4aow_A 211 ----------------------------HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY----TLD-GGD 257 (340)
T ss_dssp ----------------------------ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE----EEE-CSS
T ss_pred ----------------------------ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee----eec-CCc
Confidence 23577889999999999999999999999999999765321 111 234
Q ss_pred cceEEEeeCCCcEEEEeCCCceEEEEccCCceEeee---------cccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545 352 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF---------RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l---------~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~ 422 (441)
....+.+++++.++..+....+++||+.++..+..+ .+|...|++++|+|||++|+||+.|++|+||++.+
T Consensus 258 ~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 258 IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp CEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred eEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 455677888888877777789999999887766544 47899999999999999999999999999999988
Q ss_pred CC
Q 013545 423 HI 424 (441)
Q Consensus 423 ~~ 424 (441)
|.
T Consensus 338 Gt 339 (340)
T 4aow_A 338 GT 339 (340)
T ss_dssp --
T ss_pred cC
Confidence 75
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.6e-42 Score=324.75 Aligned_cols=297 Identities=12% Similarity=0.127 Sum_probs=225.7
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccC-CCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE-GGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
.|...|.+++|+| +|++|++++ |+++|+||........ ...+..... .....|...|.+++|++ + ..|
T Consensus 28 ~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~-d-~~l 96 (344)
T 4gqb_B 28 CMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFC-------SAGVQTEAGVADLTWVG-E-RGI 96 (344)
T ss_dssp SCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGC-------SEEEEESSCEEEEEEET-T-TEE
T ss_pred cccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCccee-------eeeeccCCCEEEEEEeC-C-CeE
Confidence 5778899999997 578888887 8899999843110000 000000000 01124667899999987 4 589
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEe-----cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545 120 VTGSYDHYVKVWDTNCTRVVMNFK-----MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~ 194 (441)
++|+.|++|+|||+.+++.+.... +.+.+.+++|++++ .+|++|+.|+.|++||+++++++..+.+|.+.|.
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg---~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG---TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC---CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 999999999999999887544332 45678999999864 4899999999999999999999999999999999
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS 274 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (441)
+++|+|++..+|+|++.|++|++||++++++...+.
T Consensus 174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-------------------------------------------- 209 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG-------------------------------------------- 209 (344)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------------------------------
T ss_pred EEEecCCCCCceeeeccccccccccccccceeeeee--------------------------------------------
Confidence 999999988788999999999999998765443321
Q ss_pred CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
...|...+++++|+|+ +.+|++|+.|++|++||+.+++.. ..+..+....
T Consensus 210 -------------------------~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~----~~~~~h~~~v 260 (344)
T 4gqb_B 210 -------------------------CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV----LSSAVHSQCV 260 (344)
T ss_dssp -----------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC----EEEECCSSCE
T ss_pred -------------------------cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE----EEEcCCCCCE
Confidence 0123456889999995 568899999999999999987642 2334455666
Q ss_pred eEEEeeCCCc-EEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCe-EEEeecCCcEEEeCCCCCCC
Q 013545 354 IQLATTQDPA-VVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE-LYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 354 ~~~~~~~~~~-~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~-l~s~s~D~~i~vW~~~~~~~ 425 (441)
..++++|++. ++++++ ...+++||+.+++++ .+.+|.+.|++|+|+|+++. |+|||.|++|++|++++..+
T Consensus 261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 7889999875 566654 478999999888754 57899999999999999875 66999999999999986543
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-41 Score=319.92 Aligned_cols=301 Identities=18% Similarity=0.288 Sum_probs=230.4
Q ss_pred eeecCCCC-ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 37 EIVSPHKG-SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 37 ~~~~~H~~-~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
..+.+|.+ .|++|+|+| ++++||||+.|++|+|||+.++... .. .....+|...|.++.|+| +
T Consensus 9 ~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~----------~~----~~~~~~h~~~v~~~~~sp-~ 72 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWI----------CK----SVLSEGHQRTVRKVAWSP-C 72 (345)
T ss_dssp EEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEE----------EE----EEECSSCSSCEEEEEECT-T
T ss_pred eeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcce----------ee----eeeccccCCcEEEEEECC-C
Confidence 34678987 999999997 5789999999999999998654210 00 011248999999999987 7
Q ss_pred CCEEEEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc---eeeeecCC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGH 189 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~---~~~~l~~h 189 (441)
+.+|++|+.|++|++||+..+. ++..+. +.+.+.++.++|++ .+|++|+.|+.|++||+.++. ++..+.+|
T Consensus 73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG---NLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC---CEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 8999999999999999988764 344444 35678999999854 489999999999999998764 45678899
Q ss_pred CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN 269 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (441)
...|.+++|+|+++. |++++.|++|++||++.+.....
T Consensus 150 ~~~v~~~~~~p~~~~-l~s~s~d~~i~~w~~~~~~~~~~----------------------------------------- 187 (345)
T 3fm0_A 150 TQDVKHVVWHPSQEL-LASASYDDTVKLYREEEDDWVCC----------------------------------------- 187 (345)
T ss_dssp CSCEEEEEECSSSSC-EEEEETTSCEEEEEEETTEEEEE-----------------------------------------
T ss_pred CCCeEEEEECCCCCE-EEEEeCCCcEEEEEecCCCEEEE-----------------------------------------
Confidence 999999999999884 78999999999999875421110
Q ss_pred CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce----------
Q 013545 270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT---------- 339 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~---------- 339 (441)
....+|...|++|+|+|+|++|++|+.|++|++||.......
T Consensus 188 ----------------------------~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 188 ----------------------------ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp ----------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred ----------------------------EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence 012467888999999999999999999999999996432110
Q ss_pred -eeeeeeEE-eccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCc---------eEeeecccccceEEEEEcCCC-CeE
Q 013545 340 -LVNFETVR-LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK---------TCLTFRGHYEYVNCCCFSSQD-QEL 406 (441)
Q Consensus 340 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~---------~~~~l~gh~~~v~~v~fspd~-~~l 406 (441)
........ .+......+++++++..+++++. ..+++|+...+. ..+.+.+|.+.|++|+|+|++ .+|
T Consensus 240 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 319 (345)
T 3fm0_A 240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL 319 (345)
T ss_dssp EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence 00011111 13344567888898888877655 789999986643 123457999999999999998 489
Q ss_pred EEeecCCcEEEeCCCCCCCC
Q 013545 407 YTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 407 ~s~s~D~~i~vW~~~~~~~~ 426 (441)
||||.|++|++|+..+.+..
T Consensus 320 aS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 320 ASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EEEETTSCEEEEEECC----
T ss_pred EEcCCCCcEEEEEecCCCCc
Confidence 99999999999999877643
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.1e-40 Score=309.91 Aligned_cols=289 Identities=22% Similarity=0.414 Sum_probs=236.3
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
...+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++... ....+|...|.++.|+| +
T Consensus 16 ~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~h~~~v~~~~~~~-~ 76 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE-----------------KTISGHKLGISDVAWSS-D 76 (312)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEECT-T
T ss_pred EEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccc-----------------hhhccCCCceEEEEEcC-C
Confidence 345679999999999997 5789999999999999998765321 11347999999999987 7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~ 194 (441)
+++|++|+.|++|++||+.+++++..+.. .+.+..+.+++.. .+|++|+.|+.|++||+++++.+..+.+|...|.
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 153 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 153 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEE
Confidence 88999999999999999999998887764 4568888888854 4899999999999999999999999999999999
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS 274 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (441)
++.|+|+++ +|++++.||.|++||++++.++..+.
T Consensus 154 ~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~-------------------------------------------- 188 (312)
T 4ery_A 154 AVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLI-------------------------------------------- 188 (312)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEEC--------------------------------------------
T ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEe--------------------------------------------
Confidence 999999987 57899999999999998765433221
Q ss_pred CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc--
Q 013545 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK-- 352 (441)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~-- 352 (441)
..+..++..++|+|++++|++++.|+.|++||+.+++... ....+...
T Consensus 189 --------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~ 238 (312)
T 4ery_A 189 --------------------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK----TYTGHKNEKY 238 (312)
T ss_dssp --------------------------CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE----EECSSCCSSS
T ss_pred --------------------------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE----EEEecCCceE
Confidence 1233568899999999999999999999999998865321 11111111
Q ss_pred ceEEEe-eCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee--cCCcEEEeCCC
Q 013545 353 PIQLAT-TQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG--NDRQILVWCPS 421 (441)
Q Consensus 353 ~~~~~~-~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s--~D~~i~vW~~~ 421 (441)
.....+ .+++..+++++. +.+++||+.+++.+.++.+|.+.|.+++|+|++++|++++ .|++|++|+.+
T Consensus 239 ~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 122233 356667777655 6899999999999999999999999999999999999987 69999999864
No 14
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.7e-41 Score=325.02 Aligned_cols=291 Identities=14% Similarity=0.201 Sum_probs=222.5
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeC------CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGAS------DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP 113 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~ 113 (441)
..|.+.|++++|+| +|++|||||. |++|++|+..++..... . .....+|...|.+++|+|
T Consensus 39 ~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~------~-------~~~~~~~~~~V~~~~~s~ 104 (357)
T 4g56_B 39 ACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNES------L-------CTAGVQTEAGVTDVAWVS 104 (357)
T ss_dssp -CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGG------G-------CSEEEECSSCEEEEEEET
T ss_pred ccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCccee------E-------ecccCCCCCCEEEEEEcC
Confidence 46999999999997 6889999998 77899998766542110 0 011236888999999987
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEE-----EecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC
Q 013545 114 VDTGLFVTGSYDHYVKVWDTNCTRVVMN-----FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG 188 (441)
Q Consensus 114 ~~~~~l~sgs~D~~i~iWd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~ 188 (441)
++ .+++++.|++|++||+.+++.... ..+.+.+.+++++|++ .+|++|+.|+.|++||+++++.+..+.+
T Consensus 105 -d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg---~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 105 -EK-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG---TQAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp -TT-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred -CC-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC---CEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 44 677889999999999988765322 2245678999999864 4899999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545 189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG 268 (441)
Q Consensus 189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (441)
|...|.+++|+|+++.++++++.|++|++||++++++...+
T Consensus 180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~--------------------------------------- 220 (357)
T 4g56_B 180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI--------------------------------------- 220 (357)
T ss_dssp CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---------------------------------------
T ss_pred CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---------------------------------------
Confidence 99999999999998767899999999999999865422111
Q ss_pred CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEE
Q 013545 269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVR 347 (441)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~ 347 (441)
....|...+++|+|+|++ .+|++|+.|++|++||+.+++... ...
T Consensus 221 ------------------------------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~----~~~ 266 (357)
T 4g56_B 221 ------------------------------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ----TSA 266 (357)
T ss_dssp ------------------------------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE----EEC
T ss_pred ------------------------------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE----EEe
Confidence 011245678999999984 688999999999999998875422 223
Q ss_pred eccCcceEEEeeCCCc-EEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcC-CCCeEEEeecCCcEEEeCCCCC
Q 013545 348 LQTSKPIQLATTQDPA-VVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS-QDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 348 ~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp-d~~~l~s~s~D~~i~vW~~~~~ 423 (441)
.+......+++++++. ++++++. ..+++||+.+++.+..+ +|.+.|++|+||| |+++|+|||.|++|++|++++.
T Consensus 267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 3445566788998874 5666544 78999999999887665 7999999999999 8999999999999999998653
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.6e-41 Score=345.64 Aligned_cols=359 Identities=18% Similarity=0.263 Sum_probs=248.2
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
..+.+|.+.|++++|+|++...|+||+.|++|++||..+++.. ....+|...|.++.|+| ++
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~-----------------~~l~~H~~~V~~v~fsp-dg 202 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-----------------STFGEHTKFVHSVRYNP-DG 202 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE-----------------EEECCCSSCEEEEEECT-TS
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe-----------------eeeccccCceEEEEECC-CC
Confidence 3467999999999999854446999999999999997654210 12358999999999987 78
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEe--------cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee----
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFK--------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ---- 184 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~---- 184 (441)
.+||||+.|++|++||+.+++++..+. +.+.+..+.|+|++ .+|++++.|+.|++||+++++.+.
T Consensus 203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg---~~l~s~s~D~~v~lWd~~~~~~~~~~~~ 279 (611)
T 1nr0_A 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG---TKIASASADKTIKIWNVATLKVEKTIPV 279 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC---CEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence 999999999999999999998887763 55678999999864 489999999999999998876443
Q ss_pred ---------------------------------------eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCce
Q 013545 185 ---------------------------------------TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC 225 (441)
Q Consensus 185 ---------------------------------------~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~ 225 (441)
.+.+|...|.+++|+|+++ .|++++.|++|++||++++.+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCE
T ss_pred CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCce
Confidence 3458999999999999998 578999999999999998776
Q ss_pred eeEecc-CCcccc-----CCCCcccccccc------cCccCCcCCCCC-CcccCCCCCccccCcccccCCC--CcccccC
Q 013545 226 FRVLDQ-SQSQLG-----RRPPLLKRKSLS------AGQNSSVKPRAP-QKRSANGNGVRQSSVGRIPAKG--SVRQRLH 290 (441)
Q Consensus 226 ~~~~~~-~~~~~~-----~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 290 (441)
...+.. +...+. ....+....... ............ .........+.+++++...... .......
T Consensus 359 ~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~ 438 (611)
T 1nr0_A 359 NRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 438 (611)
T ss_dssp EECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred eeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEe
Confidence 554321 111000 000000000000 000000000000 0000000112222222111000 0000000
Q ss_pred CCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC
Q 013545 291 PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM 370 (441)
Q Consensus 291 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (441)
.+. .....|...+.+++|+|||++|++|+.|++|++||+.++... .... ..+...+..++++|++.++++++.
T Consensus 439 ~~~----~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~--~~~~-~~h~~~v~~v~fspdg~~las~s~ 511 (611)
T 1nr0_A 439 HGK----LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS--EVKT-IVHPAEITSVAFSNNGAFLVATDQ 511 (611)
T ss_dssp TTE----EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE--EEEE-EECSSCEEEEEECTTSSEEEEEET
T ss_pred CCc----eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee--eeec-cCCCCceEEEEECCCCCEEEEEcC
Confidence 000 011236677999999999999999999999999999865321 1122 334566778999999999988765
Q ss_pred -CceEEEEccC-CceEee--ecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 371 -TAVKAFDIWS-GKTCLT--FRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 371 -~~~~~wd~~~-~~~~~~--l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
..+++|++.+ ++.... +.+|...|++|+|||||++|+|||.|++|+||++.++.
T Consensus 512 d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 512 SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred CCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 6899999987 665544 45599999999999999999999999999999998754
No 16
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.5e-41 Score=334.11 Aligned_cols=300 Identities=17% Similarity=0.220 Sum_probs=224.6
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
...+|...|+||+|+|.++++||+|+.||+|+|||+.++... .. ....+|.+.|.++.|+|.++.
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~----------~~-----~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP----------TF-----IKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC----------EE-----ECCCSSSCCCCEEEECSSCTT
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce----------eE-----EEccCCCCCEEEEEEeCCCCC
Confidence 345799999999999977889999999999999999765421 00 123489999999999987889
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecC---CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~ 194 (441)
+|+|||.|++|++||++++......... ..+.++.++++ ..+|++|+.|+.|++||++. +.+..+.+|...|.
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~ 254 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSAS---SRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVT 254 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETT---TTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEE
T ss_pred EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCC---CCEEEEEeCCCcEeeeccCc-ceeEEEecccceEE
Confidence 9999999999999999876554333322 22455666664 45899999999999999964 56778899999999
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS 274 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (441)
+++|+|+++.+|++|+.|++|++||+++......+
T Consensus 255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~--------------------------------------------- 289 (435)
T 4e54_B 255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF--------------------------------------------- 289 (435)
T ss_dssp EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC---------------------------------------------
T ss_pred eeeecCCCceEEEEecCcceeeEEecccccccceE---------------------------------------------
Confidence 99999998888999999999999999864211000
Q ss_pred CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeee--EEeccCc
Q 013545 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET--VRLQTSK 352 (441)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~--~~~~~~~ 352 (441)
....+|..+|++|+|+|+|.+|++++.|++|++||+.+++........ .......
T Consensus 290 -----------------------~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 346 (435)
T 4e54_B 290 -----------------------LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT 346 (435)
T ss_dssp -----------------------SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSC
T ss_pred -----------------------EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccce
Confidence 012367889999999999999999999999999999887542211100 0000111
Q ss_pred ceEEEeeCCCcEEEEeC-----------C--CceEEEEccCCceEeee-cccccceEEE-EEcCCCCeEEEeecCCcEEE
Q 013545 353 PIQLATTQDPAVVFVPC-----------M--TAVKAFDIWSGKTCLTF-RGHYEYVNCC-CFSSQDQELYTGGNDRQILV 417 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~~-----------~--~~~~~wd~~~~~~~~~l-~gh~~~v~~v-~fspd~~~l~s~s~D~~i~v 417 (441)
+....+.+++..++++. . ..+++||+.+++.+..+ .+|...|.++ +|||||++|++|+ |++|+|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 22333444444443331 1 35999999999988876 4788889887 6999999999886 889999
Q ss_pred eCCCCCCC
Q 013545 418 WCPSRHIS 425 (441)
Q Consensus 418 W~~~~~~~ 425 (441)
|++..++.
T Consensus 426 W~~~~gk~ 433 (435)
T 4e54_B 426 WSQQEART 433 (435)
T ss_dssp CCCC----
T ss_pred EECCcCee
Confidence 99988764
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-39 Score=306.16 Aligned_cols=294 Identities=20% Similarity=0.295 Sum_probs=217.9
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
..+.+|.+.|++++|+|+ +|+||+.|++|+|||+..+... .+... ...+|...|.++.|+| ++
T Consensus 8 ~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~----------~~~~~---~~~~h~~~v~~v~~sp-~~ 70 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFT----------LIDVL---DETAHKKAIRSVAWRP-HT 70 (330)
T ss_dssp EEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCE----------EEEEE---CTTCCCSCEEEEEECT-TS
T ss_pred eeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeE----------EEEEE---ecCCccCCEEEEEECC-CC
Confidence 456799999999999853 8999999999999999754210 00001 1124999999999987 78
Q ss_pred CEEEEEeCCCcEEEEECCC-------CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC----ceee
Q 013545 117 GLFVTGSYDHYVKVWDTNC-------TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG----AISQ 184 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~----~~~~ 184 (441)
.+|++|+.|++|++||+.. ..++..+. +.+.+.++.|+|++ .+|++|+.|+.|++||+... +++.
T Consensus 71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g---~~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG---YYLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS---CEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC---CEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 8999999999999999853 23444443 34668899999864 48999999999999999432 4567
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc--eeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG--CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ 262 (441)
Q Consensus 185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (441)
.+.+|...|.+++|+|++. +|+||+.|++|++||++.+. ++.
T Consensus 148 ~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~----------------------------------- 191 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVA----------------------------------- 191 (330)
T ss_dssp EECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-----------------------------------
T ss_pred EeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEE-----------------------------------
Confidence 8899999999999999987 58999999999999986531 111
Q ss_pred cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC--CCEEEEeecCCcEEEeeCCCCCce-
Q 013545 263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED--GMYLLSAGSDSRIRLWDVESGRNT- 339 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~sgs~D~~i~~wd~~~~~~~- 339 (441)
.+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+.++...
T Consensus 192 ------------------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~ 235 (330)
T 2hes_X 192 ------------------------------------VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD 235 (330)
T ss_dssp ------------------------------------EECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS
T ss_pred ------------------------------------EccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc
Confidence 12468889999999999 778999999999999998754210
Q ss_pred ---eeeeeeEEe-ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCc--eE-eeeccccc-ceEEEEEcC--CCCeEEEe
Q 013545 340 ---LVNFETVRL-QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGK--TC-LTFRGHYE-YVNCCCFSS--QDQELYTG 409 (441)
Q Consensus 340 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~--~~-~~l~gh~~-~v~~v~fsp--d~~~l~s~ 409 (441)
......... +......+++++++.++..+..+.+++|+..+++ .. ..+.+|.. .|++++|+| ++++|+||
T Consensus 236 ~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~ 315 (330)
T 2hes_X 236 QQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATG 315 (330)
T ss_dssp CEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEE
T ss_pred cceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEe
Confidence 011111111 3344566778766644444456789999998874 33 33578987 899999999 78999999
Q ss_pred ecCCcEEEeCCCC
Q 013545 410 GNDRQILVWCPSR 422 (441)
Q Consensus 410 s~D~~i~vW~~~~ 422 (441)
|.|++|+||++..
T Consensus 316 s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 316 GDDGIVNFWSLEK 328 (330)
T ss_dssp ETTSEEEEEEC--
T ss_pred cCCCcEEEEEecc
Confidence 9999999999864
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7e-40 Score=336.05 Aligned_cols=308 Identities=17% Similarity=0.232 Sum_probs=238.6
Q ss_pred cccceecccceeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccc
Q 013545 26 RLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYA 105 (441)
Q Consensus 26 ~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 105 (441)
++..+........+.+|...|++++|+| ++++||||+.||+|+|||+.++... . .....+|.+.
T Consensus 42 ~l~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~------------~---~~~~~~~~~~ 105 (611)
T 1nr0_A 42 YTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHI------------L---KTTIPVFSGP 105 (611)
T ss_dssp EEEETTCSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCC------------E---EEEEECSSSC
T ss_pred EEecCCCcccCeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcce------------e---eEeecccCCc
Confidence 3333333334556789999999999997 5889999999999999998654321 0 0123478999
Q ss_pred eeEEEEeeCCCCEEEEEeCC----CcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545 106 ISSAIWYPVDTGLFVTGSYD----HYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180 (441)
Q Consensus 106 V~~~~~~~~~~~~l~sgs~D----~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~ 180 (441)
|.+++|+| ++.+|++++.| ++|++||. +..+..+. +.+.+.++.|+|+. ..+|++|+.|+.|++||.+++
T Consensus 106 v~~v~fs~-dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~--~~~l~s~s~D~~v~lwd~~~~ 180 (611)
T 1nr0_A 106 VKDISWDS-ESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSR--PFRIISGSDDNTVAIFEGPPF 180 (611)
T ss_dssp EEEEEECT-TSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSS--SCEEEEEETTSCEEEEETTTB
T ss_pred eEEEEECC-CCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCC--CeEEEEEeCCCeEEEEECCCC
Confidence 99999987 78899998876 37888885 34333333 34568899999864 246999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA 260 (441)
Q Consensus 181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (441)
++..++.+|...|.+++|+|+++ +|+|++.|++|++||++++.+...+....
T Consensus 181 ~~~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~~~~~~~~~~--------------------------- 232 (611)
T 1nr0_A 181 KFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDS--------------------------- 232 (611)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTT---------------------------
T ss_pred eEeeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCcEeeeecccc---------------------------
Confidence 99999999999999999999997 58999999999999998776544331100
Q ss_pred CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee
Q 013545 261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 340 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~ 340 (441)
....+|.+.|.+|+|+|+|++|+|++.|++|++||+.+++...
T Consensus 233 -------------------------------------~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 233 -------------------------------------LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp -------------------------------------SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred -------------------------------------ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee
Confidence 0012588899999999999999999999999999998875321
Q ss_pred eeeeeEEec---cCcceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEE
Q 013545 341 VNFETVRLQ---TSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQIL 416 (441)
Q Consensus 341 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~ 416 (441)
..... ......+.+ ++..++++ ..+.+++|+..+++....+.+|...|++++|+|||++|+|++.|++|+
T Consensus 276 ----~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 276 ----TIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp ----EEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ----eecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Confidence 11111 111222233 44555444 457899999999988899999999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 013545 417 VWCPSRHIS 425 (441)
Q Consensus 417 vW~~~~~~~ 425 (441)
+|++.++..
T Consensus 350 ~Wd~~~~~~ 358 (611)
T 1nr0_A 350 SWDISTGIS 358 (611)
T ss_dssp EEETTTCCE
T ss_pred EEECCCCce
Confidence 999987754
No 19
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-39 Score=337.40 Aligned_cols=294 Identities=19% Similarity=0.337 Sum_probs=236.6
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
..+.+|.+.|++|+|+|+++++|+|||.|++|+|||+.+..... + . ......+|...|.++.+++ ++
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--~-------~---~~~~~~~h~~~v~~v~~s~-~g 442 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--G-------V---AQRRLTGHSHFVEDVVLSS-DG 442 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--C-------E---EEEEEECCSSCEEEEEECT-TS
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--c-------c---ccceecCCCCcEEEEEECC-CC
Confidence 45789999999999998777899999999999999997543210 0 0 0112358999999999987 78
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee---ecCCCCC
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT---LSGHRDG 192 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~---l~~h~~~ 192 (441)
.+|+||+.|++|++||+.++..+..+. +.+.+.++.++++. .+|++|+.|+.|++||+........ ..+|...
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~ 519 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN---RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519 (694)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS---SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred CEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC---CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence 999999999999999999998887765 45678999999864 4789999999999999876543322 2579999
Q ss_pred eEEEEEecCCC-cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 193 IMTVEWSTSSE-WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 193 v~~v~fsp~~~-~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
|.+++|+|++. ..|++++.|++|++||+++.++...
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~------------------------------------------- 556 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST------------------------------------------- 556 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-------------------------------------------
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-------------------------------------------
Confidence 99999999863 3689999999999999986543322
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 351 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~ 351 (441)
+.+|.+.|++++|+|++++|++|+.|++|++||+.+++... ... ...
T Consensus 557 ----------------------------~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~----~~~-~~~ 603 (694)
T 3dm0_A 557 ----------------------------LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY----SLE-ANS 603 (694)
T ss_dssp ----------------------------ECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE----CCB-CSS
T ss_pred ----------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE----Eec-CCC
Confidence 23577889999999999999999999999999999875321 111 133
Q ss_pred cceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccc-------------------cceEEEEEcCCCCeEEEeecC
Q 013545 352 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY-------------------EYVNCCCFSSQDQELYTGGND 412 (441)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~-------------------~~v~~v~fspd~~~l~s~s~D 412 (441)
....+++++++..++.+....+++||+.+++.+..+..|. -.+++++|||||++|+||+.|
T Consensus 604 ~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D 683 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD 683 (694)
T ss_dssp CEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred cEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC
Confidence 4567889999998888888889999999998887765432 237899999999999999999
Q ss_pred CcEEEeCCCC
Q 013545 413 RQILVWCPSR 422 (441)
Q Consensus 413 ~~i~vW~~~~ 422 (441)
++|+||++..
T Consensus 684 g~i~iW~i~~ 693 (694)
T 3dm0_A 684 GVIRVWGIGR 693 (694)
T ss_dssp SEEEEEEC--
T ss_pred CeEEEEeccC
Confidence 9999999853
No 20
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.7e-39 Score=308.42 Aligned_cols=296 Identities=17% Similarity=0.207 Sum_probs=227.9
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
...+.+|.+.|++++|+|++.++|++|+.||+|+|||+.++... .. ....+|...|.++.|+|.+
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~---~~~~~h~~~v~~~~~~~~~ 130 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT------------SF---IQGMGPGDAITGMKFNQFN 130 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE------------EE---ECCCSTTCBEEEEEEETTE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc------------ee---eecCCcCCceeEEEeCCCC
Confidence 44567999999999999754389999999999999999865421 00 1123799999999998866
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEe-cC---CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~ 191 (441)
+.+|++++.|++|++||+.... +..+. .. ..+.++.++++. .+|++|+.|+.|++||+ +++.+..+.+|..
T Consensus 131 ~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~ 205 (383)
T 3ei3_B 131 TNQLFVSSIRGATTLRDFSGSV-IQVFAKTDSWDYWYCCVDVSVSR---QMLATGDSTGRLLLLGL-DGHEIFKEKLHKA 205 (383)
T ss_dssp EEEEEEEETTTEEEEEETTSCE-EEEEECCCCSSCCEEEEEEETTT---TEEEEEETTSEEEEEET-TSCEEEEEECSSS
T ss_pred CCEEEEEeCCCEEEEEECCCCc-eEEEeccCCCCCCeEEEEECCCC---CEEEEECCCCCEEEEEC-CCCEEEEeccCCC
Confidence 7899999999999999998644 33333 22 558888888854 48999999999999999 5778889999999
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
.|.+++|+|+++++|++++.|++|++||+++.+...
T Consensus 206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------------------------------------------- 241 (383)
T 3ei3_B 206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN-------------------------------------------- 241 (383)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT--------------------------------------------
T ss_pred cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc--------------------------------------------
Confidence 999999999998678999999999999998531000
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCCCceeeeeee--EEe
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRNTLVNFET--VRL 348 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~--~~~ 348 (441)
. .....+|.+.|++++|+| ++.+|++++.|++|++||+.+++........ ...
T Consensus 242 ------------~------------~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 242 ------------S------------YIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp ------------C------------EEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred ------------c------------eEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 0 000125778899999999 9999999999999999999987542211100 000
Q ss_pred cc-----------CcceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeecc--cccceEEEEEcCCCCeEEEeecCCc
Q 013545 349 QT-----------SKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRG--HYEYVNCCCFSSQDQELYTGGNDRQ 414 (441)
Q Consensus 349 ~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~g--h~~~v~~v~fspd~~~l~s~s~D~~ 414 (441)
.. .....+++++++.+ ++ ..+.+++||+.+++.+.++.+ |...+.+++|+||+++|++|+ |++
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 01 11222444555554 22 236899999999999999987 567788889999999999997 999
Q ss_pred EEEeCCCC
Q 013545 415 ILVWCPSR 422 (441)
Q Consensus 415 i~vW~~~~ 422 (441)
|++|++++
T Consensus 375 i~iw~~~~ 382 (383)
T 3ei3_B 375 ILIWNRED 382 (383)
T ss_dssp EEEEECC-
T ss_pred EEEEecCC
Confidence 99999875
No 21
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.8e-38 Score=306.66 Aligned_cols=310 Identities=23% Similarity=0.376 Sum_probs=231.8
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCC-CCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEG-GGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
+|.+.|++++|+| ++++|++|+ |++++||++.++..... ..+.................+...|.++.|+| ++.+|
T Consensus 62 ~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFL 138 (393)
T ss_dssp ECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEE
T ss_pred CCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCCEE
Confidence 6999999999997 578999986 78999999987653210 00000000000000000113444588999987 78999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545 120 VTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f 198 (441)
++|+.|++|++||+.+++.+..+. +.+.+.++.+++++ ..|++++.|+.|++||+++++....+. |...+.+++|
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~ 214 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG---DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAV 214 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC---CEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEE
Confidence 999999999999999999887776 45678899998864 478999999999999999998877775 5677999999
Q ss_pred ec-CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545 199 ST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 277 (441)
Q Consensus 199 sp-~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
+| +++ +|++|+.|++|++||++++.+...+....
T Consensus 215 ~~~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-------------------------------------------- 249 (393)
T 1erj_A 215 SPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSEN-------------------------------------------- 249 (393)
T ss_dssp CSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC-----------------------------------------------
T ss_pred ECCCCC-EEEEEcCCCcEEEEECCCCcEEEeecccc--------------------------------------------
Confidence 99 565 68999999999999998776544331100
Q ss_pred cccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee--------eeeeeEEec
Q 013545 278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL--------VNFETVRLQ 349 (441)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~--------~~~~~~~~~ 349 (441)
....+|...|.+|+|+|+|.+|++|+.|++|++||+.+..... ........+
T Consensus 250 --------------------~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h 309 (393)
T 1erj_A 250 --------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 309 (393)
T ss_dssp -----------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC
T ss_pred --------------------cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc
Confidence 0123578899999999999999999999999999998643210 001122233
Q ss_pred cCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcC------CCCeEEEeecCCcEEEeCCCC
Q 013545 350 TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS------QDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp------d~~~l~s~s~D~~i~vW~~~~ 422 (441)
......+++++++.++++++. +.+++||+.+++.+..+.+|...|.+++|+| ++++|+|||.|++|+||+...
T Consensus 310 ~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 310 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 455667888899988888765 6899999999999999999999999999986 688999999999999998754
No 22
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.8e-38 Score=295.80 Aligned_cols=254 Identities=15% Similarity=0.227 Sum_probs=210.5
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
+.+|.+.|.++.|+| ++++|+||+.|++|++||+.++..+..+.. ...+..+.++++. .+|++|+.|+.|++||+
T Consensus 9 ~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK---NWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp EEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG---TEEEEEETTSEEEEEET
T ss_pred ecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC---CEEEEECCCCEEEEEEC
Confidence 458999999999987 789999999999999999999998887774 4568888888854 48999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
++++.+..+.+|.+.|.+++|+|+++ +|+||+.|++|++||++++.....
T Consensus 85 ~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~----------------------------- 134 (304)
T 2ynn_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQ----------------------------- 134 (304)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEE-----------------------------
T ss_pred CCCcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhh-----------------------------
Confidence 99999999999999999999999987 578999999999999875422110
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
...+|...|++++|+| ++.+|++|+.|++|++||+.+.
T Consensus 135 -----------------------------------------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~ 173 (304)
T 2ynn_A 135 -----------------------------------------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (304)
T ss_dssp -----------------------------------------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred -----------------------------------------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 1235778899999999 6789999999999999999876
Q ss_pred CceeeeeeeEEeccCcceEEEeeC--CCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545 337 RNTLVNFETVRLQTSKPIQLATTQ--DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR 413 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~ 413 (441)
..... ....+......+.+.+ ++.++++++. ..+++||+.+++++.++.+|...|.+++|+|++++|+||+.|+
T Consensus 174 ~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg 250 (304)
T 2ynn_A 174 TPNFT---LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250 (304)
T ss_dssp SCSEE---EECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred Cccce---eccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCC
Confidence 53221 1111122333455554 5667777654 6899999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCCCCCCccC
Q 013545 414 QILVWCPSRHISDGVDA 430 (441)
Q Consensus 414 ~i~vW~~~~~~~~~~~~ 430 (441)
+|++|++.+++......
T Consensus 251 ~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 251 TLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp CEEEEETTTCCEEEEEC
T ss_pred eEEEEECCCCceeeecc
Confidence 99999999887655443
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.7e-38 Score=319.85 Aligned_cols=319 Identities=23% Similarity=0.363 Sum_probs=240.9
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
..+.+|...|++++|+| ++++|++++.|++|++||..... + +...+|...|.+++++| ++
T Consensus 256 ~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~~-------------~-----~~~~~h~~~v~~~~~~~-~~ 315 (577)
T 2ymu_A 256 QTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQL-------------L-----QTLTGHSSSVWGVAFSP-DG 315 (577)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCE-------------E-----EEECCCSSCEEEEEECT-TS
T ss_pred EEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCcE-------------E-----EEEecCCCCeEEEEECC-CC
Confidence 45678999999999996 57899999999999999964211 0 12347999999999987 78
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v 196 (441)
.+|++++.|++|++||...........+...+..++++|++ .+|++++.|+.|++||. +++.+..+.+|...|.++
T Consensus 316 ~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~ 391 (577)
T 2ymu_A 316 QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG---QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV 391 (577)
T ss_dssp SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC---CEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEE
Confidence 89999999999999998766544333345678888888864 47999999999999995 677888999999999999
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
+|+|++++ |++++.|+.|++||.. ++.+..+......+ ..+.++++
T Consensus 392 ~~s~dg~~-l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v--------------------------------~~~~~s~d 437 (577)
T 2ymu_A 392 AFSPDGQT-IASASDDKTVKLWNRN-GQLLQTLTGHSSSV--------------------------------WGVAFSPD 437 (577)
T ss_dssp EECTTSSC-EEEEETTSEEEEECTT-CCEEEEEECCSSCE--------------------------------EEEEECTT
T ss_pred EECCCCCE-EEEEeCCCEEEEEeCC-CCEEEEecCCCCCe--------------------------------EEEEECCC
Confidence 99999985 7899999999999954 44444443221111 01111222
Q ss_pred ccccCCCCccc--ccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545 277 GRIPAKGSVRQ--RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 354 (441)
Q Consensus 277 ~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 354 (441)
++..+.+..+. .+............+|...|++++|+||+++|++++.|++|++||.. ++. ......+...+.
T Consensus 438 ~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~----~~~~~~h~~~v~ 512 (577)
T 2ymu_A 438 DQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQL----LQTLTGHSSSVR 512 (577)
T ss_dssp SSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCE----EEEEECCSSCEE
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCE----EEEEeCCCCCEE
Confidence 21111110000 00000001112346788999999999999999999999999999964 332 223344556677
Q ss_pred EEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 355 QLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 355 ~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
.++++|++.++++++. +.+++||. +++.+.++.+|.+.|++|+|+|||++|+|+|.|++|++||
T Consensus 513 ~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 513 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 8999999999888765 68999996 7889999999999999999999999999999999999997
No 24
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-37 Score=295.66 Aligned_cols=288 Identities=19% Similarity=0.243 Sum_probs=240.8
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++... ....+|...|.++.|++ ++.
T Consensus 27 ~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~~~~~~-~~~ 87 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERL-----------------GTLDGHTGTIWSIDVDC-FTK 87 (369)
T ss_dssp EEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEECT-TSS
T ss_pred EEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhh-----------------hhhhhcCCcEEEEEEcC-CCC
Confidence 4679999999999997 5789999999999999998765421 12347999999999987 788
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC-----CcEEEEECCCCc-----------
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED-----VQVRLCDIASGA----------- 181 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d-----~~I~vwdl~~~~----------- 181 (441)
+|++++.|++|++||+.+++.+..+.....+..+.+++.. .++++++.+ +.|++||+.++.
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCG---NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTS---SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCC---CEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 9999999999999999999999988888889999998854 478888888 999999998764
Q ss_pred eeeeecCCCC--CeEEEEEecCCCcEEEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545 182 ISQTLSGHRD--GIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP 258 (441)
Q Consensus 182 ~~~~l~~h~~--~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (441)
....+..|.. .+.+++|+|+++ .|++++.||.|++||+++ ......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~------------------------------ 213 (369)
T 3zwl_B 165 PIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDS------------------------------ 213 (369)
T ss_dssp CSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEE------------------------------
T ss_pred eeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEE------------------------------
Confidence 3344556666 899999999987 578999999999999986 222211
Q ss_pred CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545 259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN 338 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~ 338 (441)
...|...|.+++|+|++.+|++++.|++|++||+.+++.
T Consensus 214 -----------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 214 -----------------------------------------IDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp -----------------------------------------EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred -----------------------------------------EecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence 234667899999999999999999999999999998763
Q ss_pred eeeeeeeEEeccCcceEEEeeCCCcEEEEeCCC---------------ceEEEEccCCceEeeecccccceEEEEEcCCC
Q 013545 339 TLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT---------------AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD 403 (441)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~ 403 (441)
.. ... .......+++++++..+++++.. .+++||+.+++.+..+.+|...|.+++|+||+
T Consensus 253 ~~----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 327 (369)
T 3zwl_B 253 LK----KYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG 327 (369)
T ss_dssp EE----EEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred ee----eec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC
Confidence 21 111 34456678889999988876543 69999999999999999999999999999999
Q ss_pred CeEEEeecCCcEEEeCCCCCC
Q 013545 404 QELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 404 ~~l~s~s~D~~i~vW~~~~~~ 424 (441)
++|++++.|++|++|++..+.
T Consensus 328 ~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 328 TSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp SEEEEEETTSEEEEEEECHHH
T ss_pred CEEEEEcCCCeEEEEECcccc
Confidence 999999999999999998654
No 25
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-37 Score=290.02 Aligned_cols=261 Identities=17% Similarity=0.298 Sum_probs=202.0
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-CC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DT 116 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~ 116 (441)
++.+|.+.|++++|+| ++++||||+.|++|+|||+...... . .....+|+..|.++.|+++ ++
T Consensus 4 ~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~----------~-----~~~l~gH~~~V~~v~~s~~~~g 67 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHK----------L-----IDTLTGHEGPVWRVDWAHPKFG 67 (297)
T ss_dssp ECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBC----------C-----CEEECCCSSCEEEEEECCGGGC
T ss_pred eccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcE----------E-----EEEEccccCCeEEEEecCCCcC
Confidence 4679999999999996 5889999999999999998643210 0 0123589999999999764 47
Q ss_pred CEEEEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce--eeeecCCCC
Q 013545 117 GLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI--SQTLSGHRD 191 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~--~~~l~~h~~ 191 (441)
.+|+||+.|++|++||+.++. .+..+. +...+.++.++|... ..+|++++.|+.|++||++++.. ...+.+|..
T Consensus 68 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~ 146 (297)
T 2pm7_B 68 TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (297)
T ss_dssp SEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGG-CSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred CEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCC-CcEEEEEECCCcEEEEEecCCCceeeeeeecccC
Confidence 899999999999999998764 334443 456788999988632 34799999999999999987642 456789999
Q ss_pred CeEEEEEecCC------------CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545 192 GIMTVEWSTSS------------EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259 (441)
Q Consensus 192 ~v~~v~fsp~~------------~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (441)
.|.+++|+|+. ..+|++|+.|++|++||++++.....+
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~------------------------------ 196 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------------------------------ 196 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE------------------------------
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE------------------------------
Confidence 99999999973 236899999999999998754210000
Q ss_pred CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC---CEEEEeecCCcEEEeeCCCC
Q 013545 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG---MYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg---~~l~sgs~D~~i~~wd~~~~ 336 (441)
...+.+|.+.|.+|+|+|++ .+|+|++.|++|++||+.+.
T Consensus 197 -------------------------------------~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 197 -------------------------------------ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp -------------------------------------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred -------------------------------------EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 00134688899999999995 89999999999999998764
Q ss_pred CceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEE
Q 013545 337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQIL 416 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~ 416 (441)
..... . . .....+|...|++++|+|+|++|++++.|++|+
T Consensus 240 ~~~~~---~-~------------------------------------~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~ 279 (297)
T 2pm7_B 240 QGPWK---K-T------------------------------------LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279 (297)
T ss_dssp TSCCE---E-E------------------------------------ESSSSCCSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred CCccc---e-e------------------------------------eeecccCCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence 31100 0 0 001135788899999999999999999999999
Q ss_pred EeCCCC
Q 013545 417 VWCPSR 422 (441)
Q Consensus 417 vW~~~~ 422 (441)
||+...
T Consensus 280 lw~~~~ 285 (297)
T 2pm7_B 280 LWKENL 285 (297)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 998763
No 26
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3e-37 Score=298.88 Aligned_cols=298 Identities=13% Similarity=0.124 Sum_probs=237.9
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV- 114 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~- 114 (441)
..++.+|.+.|++|+|+| ++|++|+.||+|+|||+.+..... ....+. ...+|...|.++.|++.
T Consensus 9 ~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~------~~~~~~-----~~~~h~~~v~~~~~~~~~ 74 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNEN------PKDKSY-----SHFVHKSGLHHVDVLQAI 74 (397)
T ss_dssp EEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCC------GGGGEE-----EEECCTTCEEEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCccccc------CCCcce-----EEecCCCcEEEEEEeccc
Confidence 456789999999999986 689999999999999998664211 000111 12379999999999883
Q ss_pred --CC---CEEEEEeCCCcEEEEECCCCeE-----EEEEecC------CeeEEEeec----cCCCCccE-EEEEeCCCcEE
Q 013545 115 --DT---GLFVTGSYDHYVKVWDTNCTRV-----VMNFKMP------GKVYRTAMS----PLAASHML-IAAGTEDVQVR 173 (441)
Q Consensus 115 --~~---~~l~sgs~D~~i~iWd~~~~~~-----~~~~~~~------~~~~~~~~~----~~~~~~~~-las~s~d~~I~ 173 (441)
++ .+|++++.|++|++||+.++.. +..+... +.+.++.++ +. ..+ |++++.|+.|+
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~l~~~~~dg~i~ 151 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL---LSHRLVATDVKGTTY 151 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-------CEEEEEEETTSCEE
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCC---CceEEEEEeCCCcEE
Confidence 27 8999999999999999988775 6666544 778899998 64 346 89999999999
Q ss_pred EEECCC------Cceee-----ee-------cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCcc
Q 013545 174 LCDIAS------GAISQ-----TL-------SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ 235 (441)
Q Consensus 174 vwdl~~------~~~~~-----~l-------~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~ 235 (441)
+||+.+ ++.+. .+ ..|...|.+++|+|++ +|++++.|+.|++||++++.++..+..
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~---- 225 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFES---- 225 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEEC----
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEec----
Confidence 999998 76666 77 4489999999999998 578999999999999987654433211
Q ss_pred ccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceee---ccCeEEEEE
Q 013545 236 LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH---YGAVTGLKV 312 (441)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~ 312 (441)
..+| ...|.+++|
T Consensus 226 ----------------------------------------------------------------~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 226 ----------------------------------------------------------------QHSMINNSNSIRSVKF 241 (397)
T ss_dssp ----------------------------------------------------------------CC---CCCCCEEEEEE
T ss_pred ----------------------------------------------------------------cccccccCCccceEEE
Confidence 0125 678999999
Q ss_pred ccCCCEEEEeecC---CcEEEeeCCCCCceeeeeeeEEe-------------ccCcceEEEeeCCCcEEEEeCC-CceEE
Q 013545 313 TEDGMYLLSAGSD---SRIRLWDVESGRNTLVNFETVRL-------------QTSKPIQLATTQDPAVVFVPCM-TAVKA 375 (441)
Q Consensus 313 s~dg~~l~sgs~D---~~i~~wd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 375 (441)
+|++.+|++++.| +.|++||+.+++... .... +......+++++++.++++++. +.+++
T Consensus 242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 242 SPQGSLLAIAHDSNSFGCITLYETEFGERIG----SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTCCEEE----EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCcccc----eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999999999999 999999999875321 2222 3455677899999998888765 68999
Q ss_pred EEccCCceEeeec------cc---------------ccceEEEEEcCCC----------CeEEEeecCCcEEEeCCCCCC
Q 013545 376 FDIWSGKTCLTFR------GH---------------YEYVNCCCFSSQD----------QELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 376 wd~~~~~~~~~l~------gh---------------~~~v~~v~fspd~----------~~l~s~s~D~~i~vW~~~~~~ 424 (441)
||+.+++.+.++. +| ..+|.+++|+|++ ++|++|+.|+.|++|++.+++
T Consensus 318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9999999999999 88 9999999999998 799999999999999987763
No 27
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.2e-37 Score=291.47 Aligned_cols=326 Identities=13% Similarity=0.243 Sum_probs=238.8
Q ss_pred eeecCCCCceeEEEccCC---CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee
Q 013545 37 EIVSPHKGSINSLQVDLT---EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP 113 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~ 113 (441)
.+..+|.+.|++++|+|. +...+++++.++.|+|||+.++.... .........|...|.+++|++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~ 79 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR------------LLQSYVDADADENFYTCAWTY 79 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE------------EEEEEECSCTTCCEEEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE------------eeeeccccCCCCcEEEEEecc
Confidence 456799999999999973 34567777777899999997654210 111111124778899999988
Q ss_pred CC---CCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee---
Q 013545 114 VD---TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--- 186 (441)
Q Consensus 114 ~~---~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l--- 186 (441)
.. +.+|++|+.|++|++||+.+++.+..+. +.+.+..+.+++. +..+|++++.|+.|++||+++++.+..+
T Consensus 80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR--DPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS--CTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC--CCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 42 5689999999999999999999888887 5677899999883 2358999999999999999999988887
Q ss_pred cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545 187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA 266 (441)
Q Consensus 187 ~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (441)
.+|...|.+++|+|+++ .|++++.||.|++||++++.....+.....
T Consensus 158 ~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------------------------------- 204 (366)
T 3k26_A 158 EGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYD-------------------------------- 204 (366)
T ss_dssp TSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHT--------------------------------
T ss_pred ccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEE--------------------------------
Confidence 78999999999999987 578999999999999987654332221000
Q ss_pred CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee------
Q 013545 267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL------ 340 (441)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~------ 340 (441)
..+.+.......... . ........+|...|.+++|+ +.+|++++.|++|++||+.+.+...
T Consensus 205 ------~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 271 (366)
T 3k26_A 205 ------YNPNKTNRPFISQKI--H---FPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPS 271 (366)
T ss_dssp ------CCGGGCSSCCCCEEE--C---CCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTT
T ss_pred ------ecCCCCcccccceee--c---cCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccC
Confidence 000000000000000 0 00011123588899999998 7799999999999999998764311
Q ss_pred ----eeeeeEEeccCcceEEEeeCC--CcEEEEeCC-CceEEEEccCCc----eEeeeccc--ccceEEEEEcCCCCeEE
Q 013545 341 ----VNFETVRLQTSKPIQLATTQD--PAVVFVPCM-TAVKAFDIWSGK----TCLTFRGH--YEYVNCCCFSSQDQELY 407 (441)
Q Consensus 341 ----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~wd~~~~~----~~~~l~gh--~~~v~~v~fspd~~~l~ 407 (441)
........+......++++++ +.++++++. +.+++||+.+++ ....+.+| ...|++++|+|++++|+
T Consensus 272 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 351 (366)
T 3k26_A 272 ESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILI 351 (366)
T ss_dssp CCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred CcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEE
Confidence 112223333445556778888 888888765 689999998876 44478888 79999999999999999
Q ss_pred EeecCCcEEEeCCCC
Q 013545 408 TGGNDRQILVWCPSR 422 (441)
Q Consensus 408 s~s~D~~i~vW~~~~ 422 (441)
+|+.|+.|++|++.+
T Consensus 352 s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 352 AVCDDASIWRWDRLR 366 (366)
T ss_dssp EEETTSEEEEEEC--
T ss_pred EEeCCCEEEEEEecC
Confidence 999999999999853
No 28
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-37 Score=302.75 Aligned_cols=294 Identities=15% Similarity=0.228 Sum_probs=220.9
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
..+|.+.|++++|+|.++++|+||+.||+|+|||+.+..... ...... ..+|...|.++.|++ ++.+
T Consensus 59 ~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~------~~~~~~------~~~h~~~v~~~~~~~-~~~~ 125 (437)
T 3gre_A 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE------VYSSSL------TYDCSSTVTQITMIP-NFDA 125 (437)
T ss_dssp CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC------CCSCSE------EEECSSCEEEEEECT-TSSE
T ss_pred ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc------ccceee------eccCCCCEEEEEEeC-CCCE
Confidence 378999999999997357899999999999999986521100 000011 125889999999987 7889
Q ss_pred EEEEeCCCcEEEEECC---CCeEEEEEecCCeeEEEeecc-------------CCCCccEEEEEeCCCcEEEEECCCCce
Q 013545 119 FVTGSYDHYVKVWDTN---CTRVVMNFKMPGKVYRTAMSP-------------LAASHMLIAAGTEDVQVRLCDIASGAI 182 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~---~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~las~s~d~~I~vwdl~~~~~ 182 (441)
|++|+.|++|++||+. +++.+...... .+..+.+.+ ...+..+|++|+.|+.|++||+++++.
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEeCCCEEEEEEeccccCCceeeccccc-eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence 9999999999999994 55544433322 233333332 123456899999999999999999999
Q ss_pred eeeecC--CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545 183 SQTLSG--HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA 260 (441)
Q Consensus 183 ~~~l~~--h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (441)
+..+.+ |...|.+++|+|+++ +|++|+.||+|++||++++.++..+.
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------------ 253 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWS------------------------------ 253 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEB------------------------------
T ss_pred eEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEe------------------------------
Confidence 999988 899999999999987 57899999999999998765544331
Q ss_pred CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc----cCCCEEEEeecCCcEEEeeCCCC
Q 013545 261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT----EDGMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s----~dg~~l~sgs~D~~i~~wd~~~~ 336 (441)
..|..+|++++|+ |++.+|++|+.|++|++||+.++
T Consensus 254 ----------------------------------------~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 254 ----------------------------------------FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp ----------------------------------------CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred ----------------------------------------cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence 0234568899555 56889999999999999999877
Q ss_pred CceeeeeeeE-------Ee----------------ccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc---
Q 013545 337 RNTLVNFETV-------RL----------------QTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG--- 389 (441)
Q Consensus 337 ~~~~~~~~~~-------~~----------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g--- 389 (441)
+.... +... .+ +......++++ ++..+++++. +.+++||+.+++....+.+
T Consensus 294 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 371 (437)
T 3gre_A 294 HCQYA-FINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSR 371 (437)
T ss_dssp EEEEE-EESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--
T ss_pred cEEEE-EEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccc
Confidence 53211 1100 00 12224456677 6667777664 7899999999887777765
Q ss_pred ----------------------------------cccceEEEEEcCC--CCeEEEeecCCcEEEeC
Q 013545 390 ----------------------------------HYEYVNCCCFSSQ--DQELYTGGNDRQILVWC 419 (441)
Q Consensus 390 ----------------------------------h~~~v~~v~fspd--~~~l~s~s~D~~i~vW~ 419 (441)
|.+.|++++|+++ +.+|+||+.||+|+||+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 372 FSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8999999999998 78999999999999995
No 29
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-36 Score=297.24 Aligned_cols=251 Identities=20% Similarity=0.358 Sum_probs=212.6
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
..+|..+|.++.|+| ++.+|+||+.|++|++||+.+++.+..+.. .+.+.++.+++.+ .+|++|+.|+.|++||+
T Consensus 104 l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~---~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG---KLLASCSADMTIKLWDF 179 (410)
T ss_dssp EECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS---SEEEEEETTSCCCEEET
T ss_pred ecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC---CEEEEEeCCCeEEEEeC
Confidence 358999999999987 688999999999999999999988877764 5678899998753 48999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
++++++..+.+|...|.+++|+|+++ .|++|+.|++|++||++++.++..+
T Consensus 180 ~~~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~---------------------------- 230 (410)
T 1vyh_C 180 QGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTF---------------------------- 230 (410)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEE----------------------------
T ss_pred CCCceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEE----------------------------
Confidence 99999999999999999999999987 5789999999999999877554332
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
.+|...|.+++|+|++.+|++|+.|++|++||+.+++
T Consensus 231 -------------------------------------------~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~ 267 (410)
T 1vyh_C 231 -------------------------------------------TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 267 (410)
T ss_dssp -------------------------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred -------------------------------------------eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 3567789999999999999999999999999998865
Q ss_pred ceeeeeeeEEeccCcceEEEeeCC--------------------CcEEEEeCC-CceEEEEccCCceEeeecccccceEE
Q 013545 338 NTLVNFETVRLQTSKPIQLATTQD--------------------PAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNC 396 (441)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~ 396 (441)
.. .....+......+++.|+ +.++++++. +.+++||+.+++++.++.+|..+|.+
T Consensus 268 ~~----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~ 343 (410)
T 1vyh_C 268 CK----AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 343 (410)
T ss_dssp EE----EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred ee----eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEE
Confidence 32 122223344555666664 446666654 68999999999999999999999999
Q ss_pred EEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545 397 CCFSSQDQELYTGGNDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 397 v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~ 429 (441)
++|+|+|++|+||+.|++|++|+..+++.....
T Consensus 344 v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~ 376 (410)
T 1vyh_C 344 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376 (410)
T ss_dssp EEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 999999999999999999999999877654433
No 30
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.9e-38 Score=294.85 Aligned_cols=260 Identities=19% Similarity=0.331 Sum_probs=196.5
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV- 114 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~- 114 (441)
..++.+|.+.|++++|+| ++++|+||+.|++|+|||+.++... .+ ....+|...|.++.|+++
T Consensus 6 ~~~~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~----------~~-----~~l~gH~~~V~~v~~~~~~ 69 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQI----------LI-----ADLRGHEGPVWQVAWAHPM 69 (316)
T ss_dssp --------CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEE----------EE-----EEEECCSSCEEEEEECCGG
T ss_pred eeecccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcE----------EE-----EEEcCCCccEEEEEeCCCC
Confidence 345679999999999996 5789999999999999998754210 01 123589999999999764
Q ss_pred CCCEEEEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce---eeeecC
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI---SQTLSG 188 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~---~~~l~~ 188 (441)
++.+|+||+.|++|++||++++. .+..+. +.+.+.++.++|+.. ..+|++|+.|+.|++||++++.. ...+.+
T Consensus 70 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDY-GLILACGSSDGAISLLTYTGEGQWEVKKINNA 148 (316)
T ss_dssp GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTT-CSCEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCC-CcEEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence 57899999999999999998874 344443 456788999998632 35799999999999999987632 456789
Q ss_pred CCCCeEEEEEecCC----------------CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545 189 HRDGIMTVEWSTSS----------------EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ 252 (441)
Q Consensus 189 h~~~v~~v~fsp~~----------------~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (441)
|...|.+++|+|+. ..+|++|+.|++|++||++..+....+
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~----------------------- 205 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE----------------------- 205 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEE-----------------------
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcccee-----------------------
Confidence 99999999999973 125799999999999998643211000
Q ss_pred cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC----CEEEEeecCCcE
Q 013545 253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG----MYLLSAGSDSRI 328 (441)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg----~~l~sgs~D~~i 328 (441)
..+.+|.++|++++|+|++ .+|++++.|++|
T Consensus 206 ---------------------------------------------~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v 240 (316)
T 3bg1_A 206 ---------------------------------------------QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240 (316)
T ss_dssp ---------------------------------------------ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred ---------------------------------------------eecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence 0124688899999999997 889999999999
Q ss_pred EEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEE
Q 013545 329 RLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT 408 (441)
Q Consensus 329 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s 408 (441)
++||+.+..... .....+.+|...|++++|+|++++|++
T Consensus 241 ~iw~~~~~~~~~-----------------------------------------~~~~~~~~~~~~v~~v~~sp~g~~las 279 (316)
T 3bg1_A 241 FIWTCDDASSNT-----------------------------------------WSPKLLHKFNDVVWHVSWSITANILAV 279 (316)
T ss_dssp EEEECSSTTCCC-----------------------------------------CBCCEEEECSSCEEEEEECTTTCCEEE
T ss_pred EEEEccCccccc-----------------------------------------hhhhhhhcCCCcEEEEEEcCCCCEEEE
Confidence 999987532100 000122457889999999999999999
Q ss_pred eecCCcEEEeCCC
Q 013545 409 GGNDRQILVWCPS 421 (441)
Q Consensus 409 ~s~D~~i~vW~~~ 421 (441)
|+.|++|+||+..
T Consensus 280 ~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 280 SGGDNKVTLWKES 292 (316)
T ss_dssp EESSSCEEEEEEC
T ss_pred EcCCCeEEEEEEC
Confidence 9999999999875
No 31
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7e-36 Score=303.80 Aligned_cols=320 Identities=22% Similarity=0.365 Sum_probs=239.5
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
..+.+|.+.|.+++|+| ++++|++++.|++|++||..... + ....+|...|.++.+.| ++
T Consensus 215 ~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~i~~w~~~~~~-------------~-----~~~~~~~~~v~~v~~~~-d~ 274 (577)
T 2ymu_A 215 QTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQL-------------L-----QTLTGHSSSVNGVAFRP-DG 274 (577)
T ss_dssp EEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCE-------------E-----EEECCCSSCEEEEEECT-TS
T ss_pred EEEecCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCCCE-------------E-----EEEecCCCCEEEEEEcC-CC
Confidence 34678999999999996 57789999999999999964211 0 12347889999999887 78
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~ 195 (441)
.++++++.|++|++||.. ++.+..+. +.+.+..++++|+. ..|++++.|+.|++||+... .+..+.+|...|.+
T Consensus 275 ~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~ 349 (577)
T 2ymu_A 275 QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDG---QTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWG 349 (577)
T ss_dssp SEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEE
T ss_pred CEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCC---CEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEE
Confidence 899999999999999975 44454444 45678888888854 47899999999999998654 56778899999999
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
++|+|+++ .|++++.|+.|++||. ++.++..+......+ ..+.+++
T Consensus 350 ~~~s~~g~-~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v--------------------------------~~~~~s~ 395 (577)
T 2ymu_A 350 VAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSV--------------------------------RGVAFSP 395 (577)
T ss_dssp EEECTTSS-EEEEEETTSEEEEEET-TCCEEEEEECCSSCE--------------------------------EEEEECT
T ss_pred EEECCCCC-EEEEEeCCCEEEEEcC-CCCEEEEecCCCCCe--------------------------------EEEEECC
Confidence 99999998 5789999999999995 445544443221110 0111122
Q ss_pred cccccCCCCccc--ccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 276 VGRIPAKGSVRQ--RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 276 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
+++..+.+..+. .+............+|...|++++|+||+++|++++.|++|++||..... ......+....
T Consensus 396 dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~-----~~~~~~~~~~v 470 (577)
T 2ymu_A 396 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL-----LQTLTGHSSSV 470 (577)
T ss_dssp TSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCE-----EEEEECCSSCE
T ss_pred CCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCE-----EEEEcCCCCCE
Confidence 222111110000 00000001112346788999999999999999999999999999975421 22333445566
Q ss_pred eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
..++++|++.++++++. ..+++||. +++.+.++.+|...|++|+|+|||++|+|++.|++|+||+.+
T Consensus 471 ~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 77899999999888765 68999995 788999999999999999999999999999999999999974
No 32
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.6e-35 Score=277.18 Aligned_cols=284 Identities=18% Similarity=0.276 Sum_probs=231.4
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
.+|.+.|++++|+| ++++|++++ ||+|++||+.++..... +... ...+|...|.++.++| ++.+|
T Consensus 48 ~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~---------~~~~---~~~~~~~~v~~~~~~~-~~~~l 112 (337)
T 1gxr_A 48 LNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSP---------VSQL---DCLNRDNYIRSCKLLP-DGCTL 112 (337)
T ss_dssp ECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSC---------SEEE---ECSCTTSBEEEEEECT-TSSEE
T ss_pred ccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceee---------eecc---cccCCCCcEEEEEEcC-CCCEE
Confidence 48999999999996 578999998 99999999986543210 0000 1126888999999987 78899
Q ss_pred EEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545 120 VTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v 196 (441)
++++.|++|++||+.+++ ....+. +...+..+.+++.. .++++++.|+.|++||+++++.+..+.+|...|.++
T Consensus 113 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~ 189 (337)
T 1gxr_A 113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS---KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 189 (337)
T ss_dssp EEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEE
Confidence 999999999999999877 333333 34567888888753 478899999999999999999999999999999999
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
+|+|+++ .|++++.|+.|++||++++++...+
T Consensus 190 ~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~----------------------------------------------- 221 (337)
T 1gxr_A 190 DISNDGT-KLWTGGLDNTVRSWDLREGRQLQQH----------------------------------------------- 221 (337)
T ss_dssp EECTTSS-EEEEEETTSEEEEEETTTTEEEEEE-----------------------------------------------
T ss_pred EECCCCC-EEEEEecCCcEEEEECCCCceEeee-----------------------------------------------
Confidence 9999987 5789999999999999875433221
Q ss_pred ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL 356 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (441)
.|...+.+++|+|++.+|++++.|+.|++||+.+.+.. ....+......+
T Consensus 222 -------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~v~~~ 271 (337)
T 1gxr_A 222 -------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-----QLHLHESCVLSL 271 (337)
T ss_dssp -------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-----EECCCSSCEEEE
T ss_pred -------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-----EEcCCccceeEE
Confidence 23456899999999999999999999999999876531 222334556778
Q ss_pred EeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 357 ATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 357 ~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
++++++..+++++. +.+++|++.+++.+.. ..|...|.+++|+|++++|++++.|+.|++|++
T Consensus 272 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 89999998887765 6899999999988754 458899999999999999999999999999985
No 33
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=287.12 Aligned_cols=300 Identities=12% Similarity=0.144 Sum_probs=230.5
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeC---CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEe
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGAS---DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWY 112 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~ 112 (441)
..++.+|.+.|++++|+|++..++++|+. ||+|+|||+.++... .. ...+|...|.++.|+
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~----------~~------~~~~~~~~v~~~~~~ 74 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK----------LL------REIEKAKPIKCGTFG 74 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE----------EE------EEEEESSCEEEEECT
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc----------ce------eeecccCcEEEEEEc
Confidence 34567899999999999865567778887 999999999865421 01 112688899999998
Q ss_pred eCC--CCEEEEEeCCCcEEEEECCCCe-EEEEEe-cCCeeEEEeecc---CCCCccEEEEEeCCCcEEEEECCCCc-eee
Q 013545 113 PVD--TGLFVTGSYDHYVKVWDTNCTR-VVMNFK-MPGKVYRTAMSP---LAASHMLIAAGTEDVQVRLCDIASGA-ISQ 184 (441)
Q Consensus 113 ~~~--~~~l~sgs~D~~i~iWd~~~~~-~~~~~~-~~~~~~~~~~~~---~~~~~~~las~s~d~~I~vwdl~~~~-~~~ 184 (441)
|.. +.+|++|+.|++|++||+.+++ .+..+. +.+.+..+.+.+ ..++..+|++++.|+.|++||+++++ .+.
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 853 6899999999999999999887 666665 456677776543 23345689999999999999999987 677
Q ss_pred eecCCCC----CeEEEE----EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545 185 TLSGHRD----GIMTVE----WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256 (441)
Q Consensus 185 ~l~~h~~----~v~~v~----fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (441)
.+..|.+ .+.++. |+|+++ +|++++.||.|++||++++.+..
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~----------------------------- 204 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRW----------------------------- 204 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEE-----------------------------
T ss_pred eccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCceee-----------------------------
Confidence 7766655 789998 678877 57899999999999998653211
Q ss_pred CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc---CCCEEEEeecCCcEEEeeC
Q 013545 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE---DGMYLLSAGSDSRIRLWDV 333 (441)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---dg~~l~sgs~D~~i~~wd~ 333 (441)
...|...|.+++|+| ++.+|++++.|++|++||+
T Consensus 205 -------------------------------------------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 205 -------------------------------------------ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp -------------------------------------------EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred -------------------------------------------ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 124567799999999 9999999999999999999
Q ss_pred CCCCceee-eeeeEEeccCcceEEEeeCCCc-EEEEeCC-CceEEEEccCC-------------------ceEeeecccc
Q 013545 334 ESGRNTLV-NFETVRLQTSKPIQLATTQDPA-VVFVPCM-TAVKAFDIWSG-------------------KTCLTFRGHY 391 (441)
Q Consensus 334 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~wd~~~~-------------------~~~~~l~gh~ 391 (441)
.+++.... .......+......+++++++. ++++++. +.+++||+.++ +.+.++.+|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence 87543211 1112223455667788999987 5666544 68999999754 3567899999
Q ss_pred cceEEEEEcCCCCeEE-EeecCCcEEEeCCCCCC
Q 013545 392 EYVNCCCFSSQDQELY-TGGNDRQILVWCPSRHI 424 (441)
Q Consensus 392 ~~v~~v~fspd~~~l~-s~s~D~~i~vW~~~~~~ 424 (441)
.+|.+++|+|++++|+ |++.|+.|++|++.+..
T Consensus 322 ~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 322 QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999999999999998 89999999999987643
No 34
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-37 Score=309.80 Aligned_cols=300 Identities=8% Similarity=0.017 Sum_probs=209.8
Q ss_pred ecCCCCceeEEEccCC-----CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee
Q 013545 39 VSPHKGSINSLQVDLT-----EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP 113 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~-----~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~ 113 (441)
+.+|.+.|++++|+|. ++.+||||+.||+|+|||+.++..... .......+. ....+|...|.++.|++
T Consensus 203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~-~~~~~~~p~-----~~l~~h~~~v~sv~~s~ 276 (524)
T 2j04_B 203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH-VFKMCEKPS-----LTLSLADSLITTFDFLS 276 (524)
T ss_dssp EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS-EEECCCSCS-----EEECCTTTCEEEEEESS
T ss_pred EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc-cceeecCce-----EEEEcCCCCEEEEEecC
Confidence 4578899999999985 256999999999999999976532100 000000011 12357999999999986
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCe-EEEEEe-cCCeeEEEe--eccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC
Q 013545 114 VDTGLFVTGSYDHYVKVWDTNCTR-VVMNFK-MPGKVYRTA--MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH 189 (441)
Q Consensus 114 ~~~~~l~sgs~D~~i~iWd~~~~~-~~~~~~-~~~~~~~~~--~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h 189 (441)
. .+|++|+.|++|++||++++. +...+. +.+.+.+++ +++++ ..+||+|+.|++|+|||++++++...+.+|
T Consensus 277 ~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g--~~~laS~S~D~tvklWD~~~~~~~~~~~~~ 352 (524)
T 2j04_B 277 P--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE--DTVVSTVAVDGYFYIFNPKDIATTKTTVSR 352 (524)
T ss_dssp S--SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS--CCEEEEEETTSEEEEECGGGHHHHCEEEEE
T ss_pred C--CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC--CeEEEEeccCCeEEEEECCCCCcccccccc
Confidence 3 489999999999999998764 333344 456788773 34432 258999999999999999998888888887
Q ss_pred CC--CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCC
Q 013545 190 RD--GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSAN 267 (441)
Q Consensus 190 ~~--~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (441)
.. .|.+++|+|+++. |++++.|++|++||++++.+...
T Consensus 353 ~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~~~~--------------------------------------- 392 (524)
T 2j04_B 353 FRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFAVHP--------------------------------------- 392 (524)
T ss_dssp CSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTCCEE---------------------------------------
T ss_pred cccCcccceEeCCCcCe-EEEeCCCCcEEEEECccccccee---------------------------------------
Confidence 64 5889999999874 78999999999999986543221
Q ss_pred CCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE-
Q 013545 268 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV- 346 (441)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~- 346 (441)
+.+|.+.|++|+|||+|++|+||+.|++|++||+..... ..+...
T Consensus 393 --------------------------------l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~--~~~~~~~ 438 (524)
T 2j04_B 393 --------------------------------LVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL--HGIKNSS 438 (524)
T ss_dssp --------------------------------EEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT--TCC----
T ss_pred --------------------------------eecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc--cccccCc
Confidence 246888999999999999999999999999999875321 100000
Q ss_pred EeccC-cceEEEeeCCCcEEEEeCCCceEEEEcc-CCceEeeecccccceEEEEEcCCCC---eEEEeecCCcEEEeCCC
Q 013545 347 RLQTS-KPIQLATTQDPAVVFVPCMTAVKAFDIW-SGKTCLTFRGHYEYVNCCCFSSQDQ---ELYTGGNDRQILVWCPS 421 (441)
Q Consensus 347 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~wd~~-~~~~~~~l~gh~~~v~~v~fspd~~---~l~s~s~D~~i~vW~~~ 421 (441)
..... ....+++++++..+... ...++|... ++..+.++.+|...|++|+|||++. +||+|+.||+||||++.
T Consensus 439 ~~~~~~~v~~v~~sp~g~~~~~~--~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 439 ATQKSLRLWKWDYSIKDDKYRID--SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp --CCCCEEEECBCCSSSCEEEEC--CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred cceeeeEEEEeccCCCCCeEEcc--CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 00111 12356777877644221 222333222 4778889999999999999999954 89999999999999987
Q ss_pred CCC
Q 013545 422 RHI 424 (441)
Q Consensus 422 ~~~ 424 (441)
..+
T Consensus 517 ~~~ 519 (524)
T 2j04_B 517 LEH 519 (524)
T ss_dssp CC-
T ss_pred ccc
Confidence 654
No 35
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.3e-36 Score=287.21 Aligned_cols=309 Identities=16% Similarity=0.194 Sum_probs=232.9
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
+++..|.+.|++++|+| ++++|++|+.|+.|+|||+.++.. ..+ ....+|...|.++.|++ ++
T Consensus 2 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~----------~~~-----~~~~~h~~~v~~~~~~~-~~ 64 (372)
T 1k8k_C 2 AYHSFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKW----------VQV-----HELKEHNGQVTGVDWAP-DS 64 (372)
T ss_dssp CEEESCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEE----------EEE-----EEEECCSSCEEEEEEET-TT
T ss_pred ceecccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcE----------Eee-----eeecCCCCcccEEEEeC-CC
Confidence 34567999999999996 578999999999999999875421 001 12247999999999987 78
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce---e-eeecCC
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI---S-QTLSGH 189 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~---~-~~l~~h 189 (441)
.+|++++.|++|++||+.+++...... +...+.++.+++++ .+|++++.|+.|++||++++.. . ....+|
T Consensus 65 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 141 (372)
T 1k8k_C 65 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE---KKFAVGSGSRVISICYFEQENDWWVCKHIKKPI 141 (372)
T ss_dssp TEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS---SEEEEEETTSSEEEEEEETTTTEEEEEEECTTC
T ss_pred CEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC---CEEEEEeCCCEEEEEEecCCCcceeeeeeeccc
Confidence 999999999999999998887655443 45668888888854 4899999999999999998763 2 334679
Q ss_pred CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN 269 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (441)
...|.+++|+|+++ +|++++.||.|++||++....-.. . . ......
T Consensus 142 ~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~-----------~-~---------------~~~~~~------ 187 (372)
T 1k8k_C 142 RSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEER-----------P-A---------------PTPWGS------ 187 (372)
T ss_dssp CSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCC-----------C-C---------------CBTTBS------
T ss_pred CCCeeEEEEcCCCC-EEEEEcCCCCEEEEEccccccccc-----------c-c---------------cccccc------
Confidence 99999999999987 578999999999999864310000 0 0 000000
Q ss_pred CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEec
Q 013545 270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 349 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~ 349 (441)
+. ..+ .......+|.+.|.+++|+|++.+|++++.|++|++||+.+++.. .....+
T Consensus 188 --------~~-~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~ 243 (372)
T 1k8k_C 188 --------KM-PFG-----------ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV----ATLASE 243 (372)
T ss_dssp --------CC-CTT-----------CEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE----EEEECS
T ss_pred --------cc-chh-----------hheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee----EEEccC
Confidence 00 000 000112367888999999999999999999999999999887632 222334
Q ss_pred cCcceEEEeeCCCcEEEEeCCCceEEEEccC--Cc--------------------------------eE------eee-c
Q 013545 350 TSKPIQLATTQDPAVVFVPCMTAVKAFDIWS--GK--------------------------------TC------LTF-R 388 (441)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~--~~--------------------------------~~------~~l-~ 388 (441)
......+++++++.+++++..+.+++|++.+ ++ .. ..+ .
T Consensus 244 ~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (372)
T 1k8k_C 244 TLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS 323 (372)
T ss_dssp SCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS
T ss_pred CCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccc
Confidence 4456778899999998888778999999987 42 10 333 4
Q ss_pred ccccceEEEEEc-CCC---CeEEEeecCCcEEEeCCCCC
Q 013545 389 GHYEYVNCCCFS-SQD---QELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 389 gh~~~v~~v~fs-pd~---~~l~s~s~D~~i~vW~~~~~ 423 (441)
+|.++|++++|+ ++| ++|+||+.|++|++|++.+.
T Consensus 324 ~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 324 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp SSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred cccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 999999999966 666 89999999999999998653
No 36
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.4e-36 Score=291.67 Aligned_cols=300 Identities=9% Similarity=0.082 Sum_probs=217.2
Q ss_pred CceeEEEccCCCCcEEEEeeCCC-------cEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 44 GSINSLQVDLTEERYLLSGASDS-------SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
-+|++++|+| ++++|++|+.|. +|+||++....... ...........+.+|...|.++.+. +
T Consensus 15 ~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~-------~~~~~~~~~~~l~~~~~~v~s~~~~---~ 83 (365)
T 4h5i_A 15 YPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTE-------KEQFHILSEFALEDNDDSPTAIDAS---K 83 (365)
T ss_dssp SCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSH-------HHHEEEEEEEECCTTSCCCCEEEEE---T
T ss_pred CCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcce-------eeeeeeeeEEEccCCCCceEEEEeC---C
Confidence 4799999996 688999998755 49999987554211 0011111112245788888877653 4
Q ss_pred CEEEEE-----------eCCCcEEEEECCCCeE-E---EEEec------CCeeEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545 117 GLFVTG-----------SYDHYVKVWDTNCTRV-V---MNFKM------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175 (441)
Q Consensus 117 ~~l~sg-----------s~D~~i~iWd~~~~~~-~---~~~~~------~~~~~~~~~~~~~~~~~~las~s~d~~I~vw 175 (441)
+.+++| +.|+++|+|++..... + ..... ...+..++|+|++. ...+|+++.|+.|+||
T Consensus 84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~-~la~as~~~d~~i~iw 162 (365)
T 4h5i_A 84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT-VAAIASSKVPAIMRII 162 (365)
T ss_dssp TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS-CEEEEESCSSCEEEEE
T ss_pred CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC-EEEEEECCCCCEEEEe
Confidence 556554 4578899998765432 1 11111 12366788998753 1234566689999999
Q ss_pred ECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545 176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS 255 (441)
Q Consensus 176 dl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (441)
|+++++.+..+. |...|.+++|+|+++ ++++++ ++.+++|+..++.+....
T Consensus 163 d~~~~~~~~~~~-~~~~V~~v~fspdg~-~l~s~s-~~~~~~~~~~~~~~~~~~-------------------------- 213 (365)
T 4h5i_A 163 DPSDLTEKFEIE-TRGEVKDLHFSTDGK-VVAYIT-GSSLEVISTVTGSCIARK-------------------------- 213 (365)
T ss_dssp ETTTTEEEEEEE-CSSCCCEEEECTTSS-EEEEEC-SSCEEEEETTTCCEEEEE--------------------------
T ss_pred ECCCCcEEEEeC-CCCceEEEEEccCCc-eEEecc-ceeEEEEEeccCcceeee--------------------------
Confidence 999999888875 778899999999998 467776 556777776654332110
Q ss_pred cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC----cEEEe
Q 013545 256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS----RIRLW 331 (441)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~----~i~~w 331 (441)
....|...|.+++|+|++.++++++.|+ ++++|
T Consensus 214 -------------------------------------------~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 214 -------------------------------------------TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp -------------------------------------------CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred -------------------------------------------ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 0124566799999999999999999988 68889
Q ss_pred eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEee-ecccccceEEEEEcCCCCeEEEe
Q 013545 332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLT-FRGHYEYVNCCCFSSQDQELYTG 409 (441)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~-l~gh~~~v~~v~fspd~~~l~s~ 409 (441)
++...............+......++++|++.++++++. ..+++||+.+++++.+ +.+|..+|++|+|||||++||||
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~ 330 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV 330 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence 987654333222233334455678899999999998866 6899999999999887 58999999999999999999999
Q ss_pred ecCCcEEEeCCCCCCCCC
Q 013545 410 GNDRQILVWCPSRHISDG 427 (441)
Q Consensus 410 s~D~~i~vW~~~~~~~~~ 427 (441)
|.|++||||+++.+....
T Consensus 331 S~D~tvrvw~ip~~~~~~ 348 (365)
T 4h5i_A 331 SAANTIHIIKLPLNYANY 348 (365)
T ss_dssp ETTSEEEEEECCTTTTC-
T ss_pred eCCCeEEEEEcCCCCcCc
Confidence 999999999998776543
No 37
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=285.01 Aligned_cols=251 Identities=22% Similarity=0.333 Sum_probs=208.9
Q ss_pred ccCcccceeEEEEeeC---CCCEEEEEeCCCcEEEEECCCCeEEEEEec---CCeeEEEeeccCCCCccEEEEEeCCCcE
Q 013545 99 EHGHKYAISSAIWYPV---DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQV 172 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~---~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~las~s~d~~I 172 (441)
..+|.++|.+++|++. ++.+|+|||.|++|++||+.++.......+ ...+.++.+++.. .++++++.|+.|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~---~~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL---PIAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS---SEEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC---CEEEEEeCCCcE
Confidence 3589999999999863 467999999999999999987775444333 3457888887753 489999999999
Q ss_pred EEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545 173 RLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ 252 (441)
Q Consensus 173 ~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (441)
++||+++++.+..+.+|...+.+++|+|+++ .|++++.|+.|++||+++++....+
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~----------------------- 160 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSL----------------------- 160 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEE-----------------------
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEe-----------------------
Confidence 9999999999999999999999999999998 5789999999999999865432221
Q ss_pred cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEee
Q 013545 253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 332 (441)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd 332 (441)
..|...|.+++|+|++++|++|+.|++|++||
T Consensus 161 ------------------------------------------------~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd 192 (321)
T 3ow8_A 161 ------------------------------------------------DTRGKFILSIAYSPDGKYLASGAIDGIINIFD 192 (321)
T ss_dssp ------------------------------------------------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ------------------------------------------------cCCCceEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 23445689999999999999999999999999
Q ss_pred CCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec
Q 013545 333 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 411 (441)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~ 411 (441)
+.+++.. .....+......++++|++.++++++. +.+++||+.+++...++.+|...|.+++|+|++++|+||+.
T Consensus 193 ~~~~~~~----~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 193 IATGKLL----HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp TTTTEEE----EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCcEE----EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 9987532 223334456678899999999888866 68999999999999999999999999999999999999999
Q ss_pred CCcEEEeCCCCCCCCCc
Q 013545 412 DRQILVWCPSRHISDGV 428 (441)
Q Consensus 412 D~~i~vW~~~~~~~~~~ 428 (441)
|++|+||++.++.....
T Consensus 269 D~~v~iwd~~~~~~~~~ 285 (321)
T 3ow8_A 269 DKSVKVWDVGTRTCVHT 285 (321)
T ss_dssp TSCEEEEETTTTEEEEE
T ss_pred CCcEEEEeCCCCEEEEE
Confidence 99999999987764433
No 38
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-37 Score=294.35 Aligned_cols=309 Identities=15% Similarity=0.159 Sum_probs=220.0
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
+++..|.+.|++++|+| ++++|++|+.|++|+|||+.++... ......+|...|.++.|+| ++
T Consensus 5 ~~~~~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~---------------~~~~~~~h~~~v~~~~~s~-~~ 67 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWK---------------HARTFSDHDKIVTCVDWAP-KS 67 (377)
T ss_dssp EEEEECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEE---------------ECCCBCCCSSCEEEEEECT-TT
T ss_pred eeEecCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceE---------------EEEEEecCCceEEEEEEeC-CC
Confidence 34556778999999997 6789999999999999998754200 0123458999999999987 68
Q ss_pred CEEEEEeCCCcEEEEECCCCe---EEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc---eeeeecC-
Q 013545 117 GLFVTGSYDHYVKVWDTNCTR---VVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSG- 188 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~---~~~~l~~- 188 (441)
++|++|+.|++|++||+.++. ....+ .+.+.+.++.+++++ .+|++++.|+.|++||+++++ ....+.+
T Consensus 68 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 68 NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE---DKFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS---SCCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC---CEEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 899999999999999998876 33332 356678889998854 478899999999999999887 4677887
Q ss_pred CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545 189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG 268 (441)
Q Consensus 189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (441)
|...|.+++|+|+++ +|++++.|++|++||++.......... . ..+
T Consensus 145 h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~--~-------------------------------~~~ 190 (377)
T 3dwl_C 145 LRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEA--S-------------------------------VWG 190 (377)
T ss_dssp CCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCS--C-------------------------------SSC
T ss_pred cCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccc--c-------------------------------ccc
Confidence 999999999999987 579999999999999875321000000 0 000
Q ss_pred CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe
Q 013545 269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL 348 (441)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~ 348 (441)
. ....+ ...... +|.+.|++++|+|++++|++++.|++|++||+.+++...........
T Consensus 191 ~------------------~~~~~--~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 249 (377)
T 3dwl_C 191 S------------------RLPFN--TVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKL 249 (377)
T ss_dssp S------------------CCCEE--EEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEEC
T ss_pred c------------------ccchh--hhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecC
Confidence 0 00000 000112 68889999999999999999999999999999987642221233344
Q ss_pred ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCc--e----------------------------E------e-------
Q 013545 349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGK--T----------------------------C------L------- 385 (441)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~--~----------------------------~------~------- 385 (441)
+......+++++++.+++++....+.+|+..... . + .
T Consensus 250 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (377)
T 3dwl_C 250 SQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDL 329 (377)
T ss_dssp SSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------------------
T ss_pred CCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhh
Confidence 4556678899999999988888888888765211 0 0 0
Q ss_pred ---------eecccccceEEEEEcCCCC----eEEEeecCCcEEEeCC
Q 013545 386 ---------TFRGHYEYVNCCCFSSQDQ----ELYTGGNDRQILVWCP 420 (441)
Q Consensus 386 ---------~l~gh~~~v~~v~fspd~~----~l~s~s~D~~i~vW~~ 420 (441)
...+|.+.|+++++.+++. .|+|||.||.|+||++
T Consensus 330 ~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 330 KGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 1123999999999776543 5999999999999985
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-36 Score=296.92 Aligned_cols=294 Identities=14% Similarity=0.191 Sum_probs=232.4
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
.+|...|++++|+| ++++|++|+.||+|++||+.+.... ...+ ....+|...|.++.|+|.++.+|
T Consensus 64 ~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~--------~~~~-----~~~~~h~~~v~~~~~~~~~~~~l 129 (416)
T 2pm9_A 64 LQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNA--------INSM-----ARFSNHSSSVKTVKFNAKQDNVL 129 (416)
T ss_dssp CCCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSC--------CCEE-----EECCCSSSCCCEEEECSSSTTBE
T ss_pred EecCCceEEEEECC-CCCeEEEEccCCeEEEeeccccccc--------ccch-----hhccCCccceEEEEEcCCCCCEE
Confidence 36899999999997 5779999999999999999763210 0011 12347999999999998558899
Q ss_pred EEEeCCCcEEEEECCCCe------EEEEE----ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC
Q 013545 120 VTGSYDHYVKVWDTNCTR------VVMNF----KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH 189 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h 189 (441)
++++.|++|++||+.++. ..... .+.+.+.++.+++.. ..+|++++.|+.|++||+++++.+..+..|
T Consensus 130 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 207 (416)
T 2pm9_A 130 ASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL--AHVFASAGSSNFASIWDLKAKKEVIHLSYT 207 (416)
T ss_dssp EEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC--TTEEEEESSSSCEEEEETTTTEEEEEECCC
T ss_pred EEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC--CcEEEEEcCCCCEEEEECCCCCcceEEecc
Confidence 999999999999998876 32222 234567888888752 358999999999999999999988888776
Q ss_pred ------CCCeEEEEEecCCCcEEEEeecCC---cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545 190 ------RDGIMTVEWSTSSEWILVTGGCDG---AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA 260 (441)
Q Consensus 190 ------~~~v~~v~fsp~~~~~l~s~s~Dg---~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (441)
...|.+++|+|++..++++++.|+ .|++||++++...
T Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---------------------------------- 253 (416)
T 2pm9_A 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---------------------------------- 253 (416)
T ss_dssp CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC----------------------------------
T ss_pred ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC----------------------------------
Confidence 789999999999866789999999 9999999753100
Q ss_pred CCcccCCCCCccccCcccccCCCCcccccCCCcccccccce-eeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCCCc
Q 013545 261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRAT-AHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRN 338 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~~~ 338 (441)
..... +|...|++++|+| ++.+|++++.|++|++||+.+++.
T Consensus 254 ------------------------------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~ 297 (416)
T 2pm9_A 254 ------------------------------------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ 297 (416)
T ss_dssp ------------------------------------SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE
T ss_pred ------------------------------------cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc
Confidence 00012 5778899999999 999999999999999999998753
Q ss_pred eeeeeeeEEeccCcceEEEeeCCC-cEEEEeCC-CceEEEEccCCceEeeec----------------------------
Q 013545 339 TLVNFETVRLQTSKPIQLATTQDP-AVVFVPCM-TAVKAFDIWSGKTCLTFR---------------------------- 388 (441)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~wd~~~~~~~~~l~---------------------------- 388 (441)
. .....+......+++++++ .++++++. +.+++|++.+++......
T Consensus 298 ~----~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (416)
T 2pm9_A 298 L----SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSV 373 (416)
T ss_dssp E----EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCS
T ss_pred c----eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccc
Confidence 2 2333445566788999998 67777665 689999997765433221
Q ss_pred -------ccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545 389 -------GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 389 -------gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~ 423 (441)
.|..++.+++|+|||++|++++.|++|+||++.+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 374 FHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp SCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 27788999999999999999999999999999864
No 40
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=288.87 Aligned_cols=279 Identities=13% Similarity=0.207 Sum_probs=230.6
Q ss_pred CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 121 (441)
|.+.|++++|+| ++++|++|+.||.|++||.. +.. + ....+|...|.++.|+| ++.+|++
T Consensus 107 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~~-~~~------------~-----~~~~~~~~~v~~~~~~~-~~~~l~~ 166 (425)
T 1r5m_A 107 TTNQVTCLAWSH-DGNSIVTGVENGELRLWNKT-GAL------------L-----NVLNFHRAPIVSVKWNK-DGTHIIS 166 (425)
T ss_dssp -CBCEEEEEECT-TSSEEEEEETTSCEEEEETT-SCE------------E-----EEECCCCSCEEEEEECT-TSSEEEE
T ss_pred CCCceEEEEEcC-CCCEEEEEeCCCeEEEEeCC-CCe------------e-----eeccCCCccEEEEEECC-CCCEEEE
Confidence 678999999997 67899999999999999932 211 1 11247889999999987 7889999
Q ss_pred EeCCCcEEEEECCCCeEEEEEecCCe----------------eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545 122 GSYDHYVKVWDTNCTRVVMNFKMPGK----------------VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT 185 (441)
Q Consensus 122 gs~D~~i~iWd~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~ 185 (441)
++.|+.|++||+.+++.+..+..... +..+.+++. ..+++++.|+.|++||+++++.+..
T Consensus 167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~i~~~d~~~~~~~~~ 242 (425)
T 1r5m_A 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD----DKFVIPGPKGAIFVYQITEKTPTGK 242 (425)
T ss_dssp EETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET----TEEEEECGGGCEEEEETTCSSCSEE
T ss_pred EecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC----CEEEEEcCCCeEEEEEcCCCceeee
Confidence 99999999999999998887765432 555666653 3588889999999999999999999
Q ss_pred ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545 186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS 265 (441)
Q Consensus 186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (441)
+.+|...|.+++|+|+++ +|++++.|+.|++||++++.+...
T Consensus 243 ~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~------------------------------------- 284 (425)
T 1r5m_A 243 LIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNSQNC------------------------------------- 284 (425)
T ss_dssp ECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSBSCSEE-------------------------------------
T ss_pred eccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCccceE-------------------------------------
Confidence 999999999999999987 578999999999999876432221
Q ss_pred CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeee
Q 013545 266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET 345 (441)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~ 345 (441)
...|...|.+++|+|++ +|++++.|++|++||+.+++.. ..
T Consensus 285 ----------------------------------~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~----~~ 325 (425)
T 1r5m_A 285 ----------------------------------FYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL----AL 325 (425)
T ss_dssp ----------------------------------ECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE----EE
T ss_pred ----------------------------------ecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe----Ee
Confidence 12466789999999999 9999999999999999876532 22
Q ss_pred EEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCc--------------------eEeeeccccc--ceEEEEEcCC
Q 013545 346 VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK--------------------TCLTFRGHYE--YVNCCCFSSQ 402 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~--------------------~~~~l~gh~~--~v~~v~fspd 402 (441)
...+......+++++++..+++++. +.+++||+.+++ .+..+.+|.. .|.+++|+|+
T Consensus 326 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 405 (425)
T 1r5m_A 326 SIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA 405 (425)
T ss_dssp EECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred cccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence 2334456667889999998888765 689999998888 8899999977 9999999999
Q ss_pred CCeEEEeecCCcEEEeCCC
Q 013545 403 DQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 403 ~~~l~s~s~D~~i~vW~~~ 421 (441)
+++|++++.|+.|++|+++
T Consensus 406 ~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 406 GNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp SSEEEEEESSSCCEEEECC
T ss_pred CceEEEEecCceEEEEeec
Confidence 9999999999999999986
No 41
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-35 Score=327.43 Aligned_cols=368 Identities=19% Similarity=0.285 Sum_probs=260.6
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
..+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++... ....+|...|.++.|+| ++
T Consensus 609 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~-----------------~~~~~h~~~v~~~~~s~-~~ 669 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKL-----------------LDIKAHEDEVLCCAFSS-DD 669 (1249)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEECT-TS
T ss_pred EEEecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEE-----------------EEeccCCCCEEEEEEec-CC
Confidence 35679999999999996 5889999999999999999876421 12347999999999987 78
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~ 195 (441)
.+|++|+.|++|++||+.+++++..+.. .+.+.++.+++... ..++++|+.|+.|++||+++++++..+.+|.+.|.+
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~ 748 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN-HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS-CCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCC-ceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence 8999999999999999999998888764 56788888888543 458999999999999999999999999999999999
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCC------cccccccccCc-------cCC---cCCC
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPP------LLKRKSLSAGQ-------NSS---VKPR 259 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-------~~~---~~~~ 259 (441)
++|+|+++ .|++++.||+|++||++++.+...+...........+ ........... ... ....
T Consensus 749 ~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~ 827 (1249)
T 3sfz_A 749 CRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827 (1249)
T ss_dssp EEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred EEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 99999988 5799999999999999988776655322110000000 00000000000 000 0000
Q ss_pred CC-------CcccCCCCCccccCcccccCCCCccccc--C-CCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEE
Q 013545 260 AP-------QKRSANGNGVRQSSVGRIPAKGSVRQRL--H-PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIR 329 (441)
Q Consensus 260 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~ 329 (441)
.. .........+.+++.+...+.+..+..+ . ...........+|.+.|++++|+|+|.+|++++.|++|+
T Consensus 828 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~ 907 (1249)
T 3sfz_A 828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR 907 (1249)
T ss_dssp TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEE
Confidence 00 0001111223334443332221111110 0 000011123457899999999999999999999999999
Q ss_pred EeeCCCCCce----ee-ee----------------------------eeEEeccCcceEEEeeCCCcEEEEeCC-CceEE
Q 013545 330 LWDVESGRNT----LV-NF----------------------------ETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKA 375 (441)
Q Consensus 330 ~wd~~~~~~~----~~-~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 375 (441)
+||+.+.... .. .. ............+++++++..+++++. +.+++
T Consensus 908 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i 987 (1249)
T 3sfz_A 908 VWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI 987 (1249)
T ss_dssp EEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEE
T ss_pred EEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEE
Confidence 9997532100 00 00 000011233456788999998888755 68999
Q ss_pred EEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 376 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 376 wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
|++.+++....+.+|...|.+++|+|||++|++++.|++|++|++.++..
T Consensus 988 ~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 988 IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp EETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred EEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence 99999999999999999999999999999999999999999999987653
No 42
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.5e-36 Score=282.76 Aligned_cols=302 Identities=15% Similarity=0.220 Sum_probs=215.8
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV- 114 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~- 114 (441)
..++.+|.+.|++++|+| ++++|++|+.||+|+|||+.++.... .. .....+|...|.++.|++.
T Consensus 4 ~~~~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~---------~~----~~~~~~~~~~v~~~~~~~~~ 69 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNW---------EL----SDSWRAHDSSIVAIDWASPE 69 (351)
T ss_dssp CCEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCE---------EE----EEEEECCSSCEEEEEECCGG
T ss_pred cccCcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcc---------ee----cceeccCCCcEEEEEEcCCC
Confidence 456789999999999997 57899999999999999997653210 00 1123479999999999886
Q ss_pred CCCEEEEEeCCCcEEEEECCCC---------eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCT---------RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~ 184 (441)
++.+|++|+.|++|++||+.++ +.+..+. +.+.+..+.+++... ..+|++++.|+.|++||+++++.+.
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL-GLKLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGG-CSEEEEEETTCEEEEEECSSTTCTT
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCC-CcEEEEecCCCcEEEecCCChHHhc
Confidence 5889999999999999999876 4444444 456788899888621 3478999999999999999887654
Q ss_pred eec-------------CCCCCeEEEEEecC---CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccc
Q 013545 185 TLS-------------GHRDGIMTVEWSTS---SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSL 248 (441)
Q Consensus 185 ~l~-------------~h~~~v~~v~fsp~---~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (441)
.+. +|...+.+++|+|+ +. ++++++.|+.+.+|+...+.....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~-------------------- 207 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKLHVA-------------------- 207 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCEEEE--------------------
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCceeee--------------------
Confidence 433 78899999999997 55 678999999998887654321100
Q ss_pred ccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC----CEEEEeec
Q 013545 249 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG----MYLLSAGS 324 (441)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg----~~l~sgs~ 324 (441)
....+|...|++++|+|++ .+|++|+.
T Consensus 208 -------------------------------------------------~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 208 -------------------------------------------------AKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp -------------------------------------------------EECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred -------------------------------------------------eecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 0123577889999999998 89999999
Q ss_pred CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe-----CCCceEEEEccCCceEeeecccccceEEEEE
Q 013545 325 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-----CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF 399 (441)
Q Consensus 325 D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f 399 (441)
|++|++||+.++......... ..........+........ ......+|+..+.+.+..+.+|...|++++|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEES----LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp TSCEEEEEEEECC-------------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred CCeEEEEeCCCCcCccccCCc----ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 999999999875432111000 0000011111111111111 1123445555556778889999999999999
Q ss_pred cCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 400 SSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 400 spd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
+|++++|+||+.|+.|++|+++++...
T Consensus 315 s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 315 NLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp CSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred cCCCCEEEEecCCCcEEEEecCcCcch
Confidence 999999999999999999999887654
No 43
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9.1e-35 Score=272.45 Aligned_cols=281 Identities=18% Similarity=0.238 Sum_probs=219.0
Q ss_pred ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~ 124 (441)
.+++|+||+ ++ +|++| .|++|+|||+.+++.. ..+ ...+|...|.++.+++ ++++||||+.
T Consensus 27 y~~~l~WS~-~~-~lAvg-~D~tV~iWd~~tg~~~----------~~~-----~~~~~~~~V~~v~~~~-~~~~l~sgs~ 87 (318)
T 4ggc_A 27 YLNLVDWSS-GN-VLAVA-LDNSVYLWSASSGDIL----------QLL-----QMEQPGEYISSVAWIK-EGNYLAVGTS 87 (318)
T ss_dssp TCBCEEECT-TS-EEEEE-ETTEEEEEETTTCCEE----------EEE-----ECCSTTCCEEEEEECT-TSSEEEEEET
T ss_pred cceEEEECC-CC-EEEEE-eCCEEEEEECCCCCEE----------EEE-----EecCCCCeEEEEEECC-CCCEEEEEEC
Confidence 468899995 33 66655 6999999999876531 011 1247888999999987 7889999999
Q ss_pred CCcEEEEECCCCeEEEEEecCC-eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeeecCCCCCeEEEEEecCC
Q 013545 125 DHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMTVEWSTSS 202 (441)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~h~~~v~~v~fsp~~ 202 (441)
|++|++||+++++++..+..+. .+.. +.+. ..++++++.++.+++|+..++. .+..+.+|...+..+.|++++
T Consensus 88 Dg~v~iw~~~~~~~~~~~~~h~~~~~~--~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLRNMTSHSARVGS--LSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEE--EEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred CCcEEEeecCCceeEEEecCccceEEE--eecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence 9999999999999988776543 3333 3332 3479999999999999998764 457788999999999999998
Q ss_pred CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545 203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282 (441)
Q Consensus 203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (441)
+ .|++++.|++|++||+++++.....
T Consensus 163 ~-~l~s~~~d~~i~iwd~~~~~~~~~~----------------------------------------------------- 188 (318)
T 4ggc_A 163 R-HLASGGNDNLVNVWPSAPGEGGWVP----------------------------------------------------- 188 (318)
T ss_dssp S-EEEEEETTSCEEEEESSCBTTBSCC-----------------------------------------------------
T ss_pred C-EEEEEecCcceeEEECCCCcccccc-----------------------------------------------------
Confidence 7 5789999999999999864311000
Q ss_pred CCcccccCCCcccccccceeeccCeEEEEEccCCCE---EEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545 283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY---LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359 (441)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~---l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (441)
......|.+.|.+++++|++.. +++++.|++|++||........ ............+.
T Consensus 189 --------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-----~~~~~~~v~~~~~~ 249 (318)
T 4ggc_A 189 --------------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-----AVDAHSQVCSILWS 249 (318)
T ss_dssp --------------SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-----EEECSSCEEEEEEE
T ss_pred --------------eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-----cccceeeeeeeeec
Confidence 0011245677999999998764 3577889999999998765321 12234455667788
Q ss_pred CCCcEEEEeC---CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545 360 QDPAVVFVPC---MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 360 ~~~~~~~~~~---~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~ 422 (441)
+++..+++++ .+.+++||+.+++++.+|.||.++|++|+|+|||++|+|||.|++|+||++..
T Consensus 250 ~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 250 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 8888776653 36899999999999999999999999999999999999999999999999854
No 44
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.7e-35 Score=284.26 Aligned_cols=282 Identities=18% Similarity=0.252 Sum_probs=221.7
Q ss_pred ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~ 124 (441)
.++.|+||+ + ++|+.| .|++|+|||+.++... .++ ...+|...|.+++|+| ++.+||+|+.
T Consensus 107 y~~~l~wS~-~-n~lAvg-ld~tV~lWd~~tg~~~----------~~~-----~~~~~~~~V~sv~fsp-dg~~lasgs~ 167 (420)
T 4gga_A 107 YLNLVDWSS-G-NVLAVA-LDNSVYLWSASSGDIL----------QLL-----QMEQPGEYISSVAWIK-EGNYLAVGTS 167 (420)
T ss_dssp TCBCEEECT-T-SEEEEE-ETTEEEEEETTTCCEE----------EEE-----ECCSTTCCEEEEEECT-TSSEEEEEET
T ss_pred cceeEEECC-C-CEEEEE-eCCEEEEEECCCCCEE----------EEE-----EecCCCCcEEEEEECC-CCCEEEEEEC
Confidence 567899984 3 466665 5999999999876531 111 1247888999999987 7899999999
Q ss_pred CCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeeecCCCCCeEEEEEecCC
Q 013545 125 DHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMTVEWSTSS 202 (441)
Q Consensus 125 D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~h~~~v~~v~fsp~~ 202 (441)
|++|++||+.+++++..+..+ ..+.++.+. ..+|++|+.|+.+++||..... .+..+.+|...+..+.|+|++
T Consensus 168 Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~-----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g 242 (420)
T 4gga_A 168 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWN-----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 242 (420)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred CCeEEEEEcCCCcEEEEEeCCCCceEEEeeC-----CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC
Confidence 999999999999998877643 445544443 3489999999999999998754 567889999999999999999
Q ss_pred CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545 203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282 (441)
Q Consensus 203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (441)
+ .+++++.|+.|++||++.+.....
T Consensus 243 ~-~l~s~~~D~~v~i~~~~~~~~~~~------------------------------------------------------ 267 (420)
T 4gga_A 243 R-HLASGGNDNLVNVWPSAPGEGGWV------------------------------------------------------ 267 (420)
T ss_dssp S-EEEEEETTSCEEEEESSCCSSCSC------------------------------------------------------
T ss_pred C-eeeeeeccccceEEeeccccccce------------------------------------------------------
Confidence 8 578999999999999875421000
Q ss_pred CCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEE--eecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545 283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLS--AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359 (441)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s--gs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (441)
.......|.+.|.+++|+|++.. +++ |+.|++|++||+.+++... . .........+.+.
T Consensus 268 -------------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~----~-~~~~~~v~~~~~~ 329 (420)
T 4gga_A 268 -------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS----A-VDAHSQVCSILWS 329 (420)
T ss_dssp -------------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE----E-EECSSCEEEEEEE
T ss_pred -------------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce----e-eccccceeeeeec
Confidence 00012356788999999998654 443 5689999999999876321 1 1224556678888
Q ss_pred CCCcEEEEeC---CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545 360 QDPAVVFVPC---MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 360 ~~~~~~~~~~---~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~ 423 (441)
+++..+++++ .+.+++||+.+++.+.+|.||.+.|++|+|+|||++|+|||.|++||||++...
T Consensus 330 ~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 330 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9888877754 368999999999999999999999999999999999999999999999998643
No 45
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=269.95 Aligned_cols=285 Identities=14% Similarity=0.195 Sum_probs=227.2
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
...+.+|.+.|++++| | ++++|++|+.||+|++||+.+.... ....+|...|.++.++| +
T Consensus 11 ~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~-----------------~~~~~~~~~v~~~~~~~-~ 70 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLG-----------------TVVYTGQGFLNSVCYDS-E 70 (313)
T ss_dssp EEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEE-----------------EEEEECSSCEEEEEEET-T
T ss_pred HHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEE-----------------EEeecCCccEEEEEECC-C
Confidence 4567899999999999 5 4678999999999999998654311 11236788999999987 7
Q ss_pred CCEEEEEeCCCcEEEEECCCC---eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCT---RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~ 191 (441)
+.+|++|+.|+.|++|++... +.+..+. +.+.+.++.+. ..++++++.|+.|++|| .++....+.+|..
T Consensus 71 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~ 143 (313)
T 3odt_A 71 KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-----DGVVISGSWDKTAKVWK--EGSLVYNLQAHNA 143 (313)
T ss_dssp TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEE--TTEEEEEEECCSS
T ss_pred CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec-----CCEEEEEeCCCCEEEEc--CCcEEEecccCCC
Confidence 889999999999999998654 3344443 34567777662 34789999999999999 6777888999999
Q ss_pred CeEEEEEec-CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545 192 GIMTVEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG 270 (441)
Q Consensus 192 ~v~~v~fsp-~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (441)
.+.++.|+| +++ .+++++.|+.|++||... ....+
T Consensus 144 ~v~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~--~~~~~----------------------------------------- 179 (313)
T 3odt_A 144 SVWDAKVVSFSEN-KFLTASADKTIKLWQNDK--VIKTF----------------------------------------- 179 (313)
T ss_dssp CEEEEEEEETTTT-EEEEEETTSCEEEEETTE--EEEEE-----------------------------------------
T ss_pred ceeEEEEccCCCC-EEEEEECCCCEEEEecCc--eEEEE-----------------------------------------
Confidence 999999999 555 689999999999999432 11111
Q ss_pred ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 350 (441)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~ 350 (441)
...|...|.+++|+|++. +++++.|++|++||+.+++.. .....+.
T Consensus 180 -----------------------------~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~----~~~~~~~ 225 (313)
T 3odt_A 180 -----------------------------SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL----RTYEGHE 225 (313)
T ss_dssp -----------------------------CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE----EEEECCS
T ss_pred -----------------------------eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh----hhhhcCC
Confidence 012567799999999998 999999999999999987632 2233345
Q ss_pred CcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 351 SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
.....+++++++.++.....+.+++||+.+++....+.+|..+|.+++|+|+++ +++++.|+.|++|++.+++..
T Consensus 226 ~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 226 SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 566778899998655445567999999999999999999999999999999998 667999999999999877644
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-36 Score=289.93 Aligned_cols=300 Identities=12% Similarity=0.178 Sum_probs=236.9
Q ss_pred CCCceeEEEccCCCCcEEEEe----------eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEE
Q 013545 42 HKGSINSLQVDLTEERYLLSG----------ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW 111 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~----------s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 111 (441)
+...|++++|+|++..+|++| +.|++|+|||+.++..... .....|...|.++.|
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~---------------~~~~~~~~~v~~~~~ 75 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP---------------IASLQVDSKFNDLDW 75 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC---------------SCCCCCSSCEEEEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE---------------EEEEecCCceEEEEE
Confidence 345789999998544599999 9999999999986642110 011258889999999
Q ss_pred eeCCCCEEEEEeCCCcEEEEECCC----CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-----
Q 013545 112 YPVDTGLFVTGSYDHYVKVWDTNC----TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA----- 181 (441)
Q Consensus 112 ~~~~~~~l~sgs~D~~i~iWd~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~----- 181 (441)
++ ++.+|++|+.|++|++||+.+ ...+..+. +.+.+.++.++++. ..+|++++.|+.|++||+.+++
T Consensus 76 s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 76 SH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ--DNVLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp CS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS--TTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred CC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC--CCEEEEEcCCCeEEEEECCCCcccccc
Confidence 87 788999999999999999987 33555544 45678888998852 3589999999999999999886
Q ss_pred -eee---eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 182 -ISQ---TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 182 -~~~---~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
... .+.+|...|.+++|+|++..+|++++.|+.|++||++++++...+....
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------------ 208 (416)
T 2pm9_A 153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS------------------------ 208 (416)
T ss_dssp CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCC------------------------
T ss_pred ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccc------------------------
Confidence 332 3468999999999999955578999999999999998876554432100
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCC---cEEEeeC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDS---RIRLWDV 333 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~---~i~~wd~ 333 (441)
...+|...|.+++|+|++ .+|++++.|+ +|++||+
T Consensus 209 -----------------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 209 -----------------------------------------PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp -----------------------------------------CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred -----------------------------------------cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 012456789999999997 6899999999 9999999
Q ss_pred CCCCceeeeeeeEE-eccCcceEEEeeC-CCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCC-CeEEEe
Q 013545 334 ESGRNTLVNFETVR-LQTSKPIQLATTQ-DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTG 409 (441)
Q Consensus 334 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~-~~l~s~ 409 (441)
.++..... ... .+......+++++ ++.++++++. +.+++||+.+++.+.++.+|...|.+++|+|++ ++|+++
T Consensus 248 ~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 248 RNANTPLQ---TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACA 324 (416)
T ss_dssp TSTTSCSB---CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEEC
T ss_pred CCCCCCcE---EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEE
Confidence 98642221 112 2345566788888 8888877764 689999999999999999999999999999999 899999
Q ss_pred ecCCcEEEeCCCCCCCCC
Q 013545 410 GNDRQILVWCPSRHISDG 427 (441)
Q Consensus 410 s~D~~i~vW~~~~~~~~~ 427 (441)
+.|++|++|++.+.....
T Consensus 325 ~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 325 SFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp CSSSEEEEEESCCCCCSS
T ss_pred ecCCcEEEEEccCCCCCc
Confidence 999999999998776543
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-34 Score=282.12 Aligned_cols=344 Identities=14% Similarity=0.192 Sum_probs=241.0
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
..+++++|+| ++++|++|+.||+|++||+.+.... ....+| .+.++.++++++.+|++|+
T Consensus 57 ~~~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~~~-----------------~~~~~~--~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 57 DAGKGNTFEK-VGSHLYKARLDGHDFLFNTIIRDGS-----------------KMLKRA--DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp BCCTTCEEEE-EETTEEEEEETTEEEEEECCSEETT-----------------TTSCSC--CEEEEEEECSSSCEEEEEE
T ss_pred ccccceeeee-cCCeEEEEEcCCcEEEEEeccccee-----------------eEEecC--CceEEEEEecCCCEEEEEE
Confidence 4566899997 5778999999999999998765431 111233 4555656666899999999
Q ss_pred CCCcEEEEECCCCeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCC
Q 013545 124 YDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS 202 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~ 202 (441)
.|++|++||+.+++....+ .+.+.+.++.++++. .+|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++
T Consensus 117 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG---EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 193 (420)
T ss_dssp TTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT
T ss_pred CCCCEEEEeCCCcceeeecccccCccEEEEECCCC---CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC
Confidence 9999999999998887765 456789999999864 489999999999999999999999999999999999999998
Q ss_pred CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545 203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282 (441)
Q Consensus 203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (441)
+ .|++++.|++|++||++++++...+......... .............. ..........+.+++.++..+.
T Consensus 194 ~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~ 264 (420)
T 3vl1_A 194 R-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG---VNSIALFVGTDRQL-----HEISTSKKNNLEFGTYGKYVIA 264 (420)
T ss_dssp T-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCC---EEEEEEEECCCSSC-----GGGCCCCCCTTCSSCTTEEEEE
T ss_pred C-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCC---ccEEEEecCCccee-----eecccCcccceEEcCCCCEEEE
Confidence 7 5789999999999999998887776543221100 00000000000000 0000011122333333333222
Q ss_pred CCccccc--CC--CcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545 283 GSVRQRL--HP--GMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA 357 (441)
Q Consensus 283 ~~~~~~~--~~--~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (441)
+..+..+ .. ...........|...|++++|+|++. +|++|+.|++|++||+.+++... .....+...++...
T Consensus 265 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~---~~~~~~~~~~v~~~ 341 (420)
T 3vl1_A 265 GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV---GEFLINEGTPINNV 341 (420)
T ss_dssp EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS---EEEEESTTSCEEEE
T ss_pred EcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch---hhhhccCCCCceEE
Confidence 1111110 00 00000111235778999999999999 99999999999999999875322 22333345566666
Q ss_pred eeCCCcEEEEeCC-CceEEEEccCC---------ceEeeecccccceEEEEEcCCCC---eEEEeecCCcEEEeCCCC
Q 013545 358 TTQDPAVVFVPCM-TAVKAFDIWSG---------KTCLTFRGHYEYVNCCCFSSQDQ---ELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 358 ~~~~~~~~~~~~~-~~~~~wd~~~~---------~~~~~l~gh~~~v~~v~fspd~~---~l~s~s~D~~i~vW~~~~ 422 (441)
+.+++..+++++. +.+++|++.+. .....+.+|.+.|.+++|+||++ .|++++.++.+++|+++.
T Consensus 342 ~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 342 YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 6777877777765 68999998763 22345778999999999999999 788888899999999864
No 48
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8e-35 Score=276.99 Aligned_cols=248 Identities=17% Similarity=0.199 Sum_probs=195.9
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~ 120 (441)
.|...|++++|+| + +.|++|+.||+|+|||+.+++... . ......+|+..|.++.|+| ++.+|+
T Consensus 80 ~~~~~v~~~~~s~-d-~~l~~~s~dg~v~lWd~~~~~~~~----------~---~~~~~~~H~~~V~~v~~sp-dg~~l~ 143 (344)
T 4gqb_B 80 QTEAGVADLTWVG-E-RGILVASDSGAVELWELDENETLI----------V---SKFCKYEHDDIVSTVSVLS-SGTQAV 143 (344)
T ss_dssp EESSCEEEEEEET-T-TEEEEEETTSEEEEEEECTTSSCE----------E---EEEEEECCSSCEEEEEECT-TSSEEE
T ss_pred ccCCCEEEEEEeC-C-CeEEEEECCCEEEEEeccCCCcee----------E---eeccccCCCCCEEEEEECC-CCCEEE
Confidence 3567899999996 3 479999999999999998765321 0 0112348999999999987 789999
Q ss_pred EEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec--CCCCCeEEEE
Q 013545 121 TGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS--GHRDGIMTVE 197 (441)
Q Consensus 121 sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~--~h~~~v~~v~ 197 (441)
||+.|++|++||+++++++..+. +.+.+.++.++++. ..+|++++.|+.|++||+++++....+. .|...+.+++
T Consensus 144 sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 221 (344)
T 4gqb_B 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK--DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA 221 (344)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC--TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC--CCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence 99999999999999999988886 45678889998864 3578999999999999999999887764 5667899999
Q ss_pred EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545 198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 277 (441)
Q Consensus 198 fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
|+|++..+|++|+.||+|++||+++++++..
T Consensus 222 ~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~------------------------------------------------- 252 (344)
T 4gqb_B 222 WHPQQSEVFVFGDENGTVSLVDTKSTSCVLS------------------------------------------------- 252 (344)
T ss_dssp ECSSCTTEEEEEETTSEEEEEESCC--CCEE-------------------------------------------------
T ss_pred ecCCCCcceEEeccCCcEEEEECCCCcEEEE-------------------------------------------------
Confidence 9998777889999999999999987644332
Q ss_pred cccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545 278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL 356 (441)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (441)
+.+|...|++|+|+|++ .+|+||+.|++|+|||+.+++. .....+.+....+
T Consensus 253 ----------------------~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-----~~~~~H~~~V~~v 305 (344)
T 4gqb_B 253 ----------------------SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-----FRSQAHRDFVRDA 305 (344)
T ss_dssp ----------------------EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-----EEECCCSSCEEEE
T ss_pred ----------------------EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-----EEEcCCCCCEEEE
Confidence 24677889999999998 5799999999999999987642 1223345667788
Q ss_pred EeeCCCcE-EEEeC-CCceEEEEccCCc
Q 013545 357 ATTQDPAV-VFVPC-MTAVKAFDIWSGK 382 (441)
Q Consensus 357 ~~~~~~~~-~~~~~-~~~~~~wd~~~~~ 382 (441)
+++|++.. +++++ ++.+++|++.+..
T Consensus 306 ~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 306 TWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 99998864 44544 5799999997653
No 49
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.1e-34 Score=271.81 Aligned_cols=250 Identities=22% Similarity=0.338 Sum_probs=208.2
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
..+|...|.++.|++ ++.+|+||+.|++|++||+.++..+..+.. ...+..+.++|++ .+|++|+.|+.|++||+
T Consensus 51 l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 51 LRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG---NYVACGGLDNICSIYNL 126 (340)
T ss_dssp ECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS---SEEEEEETTCEEEEEET
T ss_pred ecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC---CEEEEEeCCCeEEEEEC
Confidence 458999999999987 789999999999999999999998877765 4568888888854 48999999999999999
Q ss_pred CCCc----eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545 178 ASGA----ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN 253 (441)
Q Consensus 178 ~~~~----~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (441)
.++. ....+.+|.+.|.++.|+|++. +++++.|++|++||++++.+...+
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~------------------------ 180 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTF------------------------ 180 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEE------------------------
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEE------------------------
Confidence 8763 4567889999999999999874 689999999999999876543322
Q ss_pred CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeC
Q 013545 254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 333 (441)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~ 333 (441)
.+|.+.|++++|+|++.+|++|+.|++|++||+
T Consensus 181 -----------------------------------------------~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~ 213 (340)
T 1got_B 181 -----------------------------------------------TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213 (340)
T ss_dssp -----------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred -----------------------------------------------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 357788999999999999999999999999999
Q ss_pred CCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc--cccceEEEEEcCCCCeEEEee
Q 013545 334 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG--HYEYVNCCCFSSQDQELYTGG 410 (441)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g--h~~~v~~v~fspd~~~l~s~s 410 (441)
.+++.. .....+......++++|++..+++++. +.+++||+.+++.+..+.. +...|.+++|+|+|++|++|+
T Consensus 214 ~~~~~~----~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 214 REGMCR----QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp TTCSEE----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCeeE----EEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC
Confidence 887532 222334456677899999998888765 6899999999888777653 335799999999999999999
Q ss_pred cCCcEEEeCCCCCCCCCcc
Q 013545 411 NDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 411 ~D~~i~vW~~~~~~~~~~~ 429 (441)
.|++|++|+..+.......
T Consensus 290 ~d~~i~vwd~~~~~~~~~~ 308 (340)
T 1got_B 290 DDFNCNVWDALKADRAGVL 308 (340)
T ss_dssp TTSEEEEEETTTCCEEEEE
T ss_pred CCCeEEEEEcccCcEeeEe
Confidence 9999999999876654443
No 50
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-34 Score=277.57 Aligned_cols=284 Identities=17% Similarity=0.239 Sum_probs=223.2
Q ss_pred CCCCc--eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 41 PHKGS--INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 41 ~H~~~--V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
+|... ++++++++ ..+++++.|++|++||+.++... ... ...|...|.++.|++ ++.+
T Consensus 89 ~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~------------~~~----~~~~~~~v~~v~~s~-~~~~ 148 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVS------------ALA----ETDESTYVASVKWSH-DGSF 148 (401)
T ss_dssp TCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEE------------EEE----ECCTTCCEEEEEECT-TSSE
T ss_pred CCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEe------------Eee----ecCCCCCEEEEEECC-CCCE
Confidence 66654 44566652 35888999999999999866421 011 124888999999987 7889
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC-CCceeeeecCCCCCeEEE
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-SGAISQTLSGHRDGIMTV 196 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~-~~~~~~~l~~h~~~v~~v 196 (441)
|++|+.|++|++||+.+++.+..+. +.+.+.++.+.+ .+|++++.|+.|++||++ .+..+..+.+|...|.++
T Consensus 149 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 223 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR-----HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223 (401)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET-----TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred EEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC-----CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence 9999999999999999998887775 345677777732 489999999999999998 456678899999999999
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
+|+|+++ +|++|+.|+.|++||++++.+...+
T Consensus 224 ~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~----------------------------------------------- 255 (401)
T 4aez_A 224 AWRSDGL-QLASGGNDNVVQIWDARSSIPKFTK----------------------------------------------- 255 (401)
T ss_dssp EECTTSS-EEEEEETTSCEEEEETTCSSEEEEE-----------------------------------------------
T ss_pred EEcCCCC-EEEEEeCCCeEEEccCCCCCccEEe-----------------------------------------------
Confidence 9999987 5789999999999999865433221
Q ss_pred ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEee--cCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAG--SDSRIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs--~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
..|...|.+++|+|++. .+++++ .|++|++||+.+++... ... .....
T Consensus 256 ------------------------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~----~~~-~~~~v 306 (401)
T 4aez_A 256 ------------------------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN----TVD-AGSQV 306 (401)
T ss_dssp ------------------------CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE----EEE-CSSCE
T ss_pred ------------------------cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE----EEe-CCCcE
Confidence 24667899999999875 555654 79999999999876321 111 23456
Q ss_pred eEEEeeCCCcEEEEeC---CCceEEEEccCCceEe--eecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 354 IQLATTQDPAVVFVPC---MTAVKAFDIWSGKTCL--TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~---~~~~~~wd~~~~~~~~--~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
..+++++++..+++++ .+.+++|++.+++... .+.+|...|.+++|+||+++|++++.|++|++|++.++...
T Consensus 307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 7789999999888853 4789999999876554 47899999999999999999999999999999999887644
No 51
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-34 Score=276.11 Aligned_cols=294 Identities=16% Similarity=0.175 Sum_probs=227.5
Q ss_pred CCCCceeEEEccCCCCc-EEEEeeCCCcEEEEEC----CCCcccCCCCceeccceeEEeecc-----cccCcccceeEEE
Q 013545 41 PHKGSINSLQVDLTEER-YLLSGASDSSVAVYDV----QRATDYEGGGHIAKHRSVFVVDKQ-----HEHGHKYAISSAI 110 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~-~l~s~s~Dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~V~~~~ 110 (441)
.|.+.|++++|+|+ ++ +|++|+.||.|+|||+ .++... ............ ...+|...|.++.
T Consensus 43 ~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 43 VKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKY------WKLTIIAELRHPFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp EECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------C------EEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred eccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCcccc------ccccccccccccccccccccCCCCceEEEE
Confidence 45699999999974 66 9999999999999999 655410 000001111110 1124788999999
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC
Q 013545 111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH 189 (441)
Q Consensus 111 ~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h 189 (441)
|+| ++.+|++|+.|++|++|| .++..+..+. +.+.+.++.++++. .+|++++.|+.|++||+++++.+..+..|
T Consensus 116 ~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 190 (425)
T 1r5m_A 116 WSH-DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG---THIISMDVENVTILWNVISGTVMQHFELK 190 (425)
T ss_dssp ECT-TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS---SEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred EcC-CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC---CEEEEEecCCeEEEEECCCCcEEEEeecc
Confidence 987 789999999999999999 5666666665 45678889998854 47889999999999999999999888888
Q ss_pred CCC---------------eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545 190 RDG---------------IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS 254 (441)
Q Consensus 190 ~~~---------------v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (441)
... +.++.|+|++ .+++++.|+.|++||++++.....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~-------------------------- 242 (425)
T 1r5m_A 191 ETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGK-------------------------- 242 (425)
T ss_dssp ---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEE--------------------------
T ss_pred ccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeee--------------------------
Confidence 777 9999999985 368899999999999876432211
Q ss_pred CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545 255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~ 334 (441)
...|...|.+++|+|++.+|++++.|++|++||+.
T Consensus 243 ---------------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 243 ---------------------------------------------LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp ---------------------------------------------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred ---------------------------------------------eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 12466789999999999999999999999999998
Q ss_pred CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545 335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR 413 (441)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~ 413 (441)
+++... ....+......+.+++++ .++++ ..+.+++||+.+++.+..+.+|..+|.+++|+|++++|++++.|+
T Consensus 278 ~~~~~~----~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 278 NGNSQN----CFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp SBSCSE----EECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred CCccce----EecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence 765322 222234556678889988 55554 457899999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCCC
Q 013545 414 QILVWCPSRHI 424 (441)
Q Consensus 414 ~i~vW~~~~~~ 424 (441)
.|++|++.+..
T Consensus 353 ~i~i~~~~~~~ 363 (425)
T 1r5m_A 353 QVNVYDLKKLN 363 (425)
T ss_dssp CEEEEECHHHH
T ss_pred eEEEEECCCCc
Confidence 99999998655
No 52
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-34 Score=277.31 Aligned_cols=270 Identities=16% Similarity=0.143 Sum_probs=190.2
Q ss_pred EEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC------CCcEEEE
Q 013545 58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY------DHYVKVW 131 (441)
Q Consensus 58 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~------D~~i~iW 131 (441)
++++++.+.....|++.... ...|+..|.++.|+| ||.+|||||. |++|++|
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~---------------------p~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~ 75 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTA---------------------PACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVF 75 (357)
T ss_dssp -------------------------------------------CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEE
T ss_pred eEEecCCCccccccCCCCCC---------------------cccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEE
Confidence 45666677888999874221 126899999999987 8999999997 7889999
Q ss_pred ECCCCeE-----EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee----eecCCCCCeEEEEEecCC
Q 013545 132 DTNCTRV-----VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ----TLSGHRDGIMTVEWSTSS 202 (441)
Q Consensus 132 d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~----~l~~h~~~v~~v~fsp~~ 202 (441)
+..++.. .....+...+.+++|+++. .+++++.|+.|++||+.+++... ...+|...|.+++|+|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~----~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 151 (357)
T 4g56_B 76 KDPEGAPNESLCTAGVQTEAGVTDVAWVSEK----GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG 151 (357)
T ss_dssp SSCC---CGGGCSEEEECSSCEEEEEEETTT----EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS
T ss_pred ECCCCCcceeEecccCCCCCCEEEEEEcCCC----CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC
Confidence 9876643 2334456678999999853 35567889999999999886543 345899999999999999
Q ss_pred CcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545 203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282 (441)
Q Consensus 203 ~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (441)
+ +|++|+.|++|++||++++.+...+
T Consensus 152 ~-~l~sgs~dg~v~iwd~~~~~~~~~~----------------------------------------------------- 177 (357)
T 4g56_B 152 T-QAVSGGKDFSVKVWDLSQKAVLKSY----------------------------------------------------- 177 (357)
T ss_dssp S-EEEEEETTSCEEEEETTTTEEEEEE-----------------------------------------------------
T ss_pred C-EEEEEeCCCeEEEEECCCCcEEEEE-----------------------------------------------------
Confidence 8 5799999999999999876544332
Q ss_pred CCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC
Q 013545 283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD 361 (441)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (441)
.+|.+.|++|+|+|++. ++++++.|++|++||+++++..... ........+..++++|+
T Consensus 178 ------------------~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~--~~~~~~~~v~~v~~sp~ 237 (357)
T 4g56_B 178 ------------------NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI--DFCASDTIPTSVTWHPE 237 (357)
T ss_dssp ------------------CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC--CCTTCCSCEEEEEECTT
T ss_pred ------------------cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee--eeccccccccchhhhhc
Confidence 35778899999999985 7899999999999999987642210 11112234566788887
Q ss_pred C-cEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCC-CeEEEeecCCcEEEeCCCCCCCCC
Q 013545 362 P-AVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRHISDG 427 (441)
Q Consensus 362 ~-~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~-~~l~s~s~D~~i~vW~~~~~~~~~ 427 (441)
+ .++++++. ..+++||+.+++.+.++.+|...|++++|+|++ ++|+||+.|++|+|||+.+++...
T Consensus 238 ~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~ 306 (357)
T 4g56_B 238 KDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR 306 (357)
T ss_dssp STTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE
T ss_pred ccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE
Confidence 5 45555544 689999999999999999999999999999997 579999999999999998876543
No 53
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=305.12 Aligned_cols=221 Identities=13% Similarity=0.157 Sum_probs=176.1
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
..||.+.|++|+|+| ++++||+|+.||+|+|||..+... .. ...|...|.++.|++ +.+
T Consensus 13 ~~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~------------~~------~~~~~~~V~~l~fsp--g~~ 71 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEV------------VI------KLEDRSAIKEMRFVK--GIY 71 (902)
T ss_dssp EEECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTCEE------------EE------ECSSCCCEEEEEEET--TTE
T ss_pred ccCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCcEE------------EE------EcCCCCCEEEEEEcC--CCE
Confidence 448999999999997 578999999999999999764321 01 124778899999997 669
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee-----------eeec
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-----------QTLS 187 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~-----------~~l~ 187 (441)
|+|++.|++|++||+.+++++..+.+.+.+.++.++|+. .+|++|+.|+.|++||++++++. ..+.
T Consensus 72 L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g---~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~ 148 (902)
T 2oaj_A 72 LVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASL---DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA 148 (902)
T ss_dssp EEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTC---SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS
T ss_pred EEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCC---CEEEEEcCCCcEEEEECCCCccccceeccccccccccc
Confidence 999999999999999999998888888889999998864 48999999999999999988753 3457
Q ss_pred CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCC
Q 013545 188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSAN 267 (441)
Q Consensus 188 ~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (441)
+|.+.|.+++|+|++..++++|+.||+| +||++++.+...+...... + . + .
T Consensus 149 ~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~-g--~--------------------~-----~ 199 (902)
T 2oaj_A 149 ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPP-F--A--------------------P-----G 199 (902)
T ss_dssp SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCT-T--C--------------------C-----C
T ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCC-c--C--------------------C-----C
Confidence 8999999999999755578899999999 9999988776665321100 0 0 0 0
Q ss_pred CCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 268 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
+... ......|...|++++|+|+|.+|++|+.|++|++||+.+++
T Consensus 200 ---------------~~~~----------~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 200 ---------------GDFS----------EKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp ---------------STTC----------CCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred ---------------cccc----------cccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 0000 00123577889999999999999999999999999998765
No 54
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-33 Score=288.12 Aligned_cols=359 Identities=15% Similarity=0.164 Sum_probs=247.8
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccc---ceeEEEEe
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY---AISSAIWY 112 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~~ 112 (441)
...+.+|...|++++|+|++..+|++++.|++|++||+.++... ....+|.. .|.++.|+
T Consensus 153 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~-----------------~~~~~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 153 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS-----------------ASDRTHHKQGSFVRDVEFS 215 (615)
T ss_dssp EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE-----------------EEECSSSCTTCCEEEEEEC
T ss_pred ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee-----------------eeecccCCCCceEEEEEEC
Confidence 34467899999999999754348999999999999998754321 11346887 89999998
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCeEEEEE-----ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545 113 PVDTGLFVTGSYDHYVKVWDTNCTRVVMNF-----KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS 187 (441)
Q Consensus 113 ~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~ 187 (441)
|.++.+|++++.|++|++||+.+++.+..+ .+.+.+..+.++ + ..+|++++.|+.|++||+++++.+..+.
T Consensus 216 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-D---SQKFATVGADATIRVWDVTTSKCVQKWT 291 (615)
T ss_dssp STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-S---SSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-C---CCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 833889999999999999999999998888 556778888887 3 3478999999999999999999988887
Q ss_pred CC----CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCC--CCcccccc--------c-----
Q 013545 188 GH----RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR--PPLLKRKS--------L----- 248 (441)
Q Consensus 188 ~h----~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~----- 248 (441)
.| ...+.++.|. +++ .+++++.|+.|++||++++.++..+..+...+... +.+..... .
T Consensus 292 ~~~~~~~~~~~~~~~~-~~~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~ 369 (615)
T 1pgu_A 292 LDKQQLGNQQVGVVAT-GNG-RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQ 369 (615)
T ss_dssp CCTTCGGGCEEEEEEE-ETT-EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEEC
T ss_pred CCCCcccCceeEEEeC-CCC-eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcC
Confidence 76 4778888886 555 57899999999999999877766665432211000 00000000 0
Q ss_pred -ccCccCCcCCC-CCCcc--cCCCC----------------CccccCcccc-----------------------------
Q 013545 249 -SAGQNSSVKPR-APQKR--SANGN----------------GVRQSSVGRI----------------------------- 279 (441)
Q Consensus 249 -~~~~~~~~~~~-~~~~~--~~~~~----------------~~~~~~~~~~----------------------------- 279 (441)
........... ..... ..++. .+..++.+..
T Consensus 370 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (615)
T 1pgu_A 370 DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG 449 (615)
T ss_dssp CCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred cccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCc
Confidence 00000000000 00000 00000 0000011000
Q ss_pred ---------cCCCCc-cccc--CCCccccc--ccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeee
Q 013545 280 ---------PAKGSV-RQRL--HPGMLSSQ--DRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET 345 (441)
Q Consensus 280 ---------~~~~~~-~~~~--~~~~~~~~--~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~ 345 (441)
.+.+.. +..+ ........ ....+|...|++++|+|++++|++++.|++|++||+.+++... .
T Consensus 450 ~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~----~ 525 (615)
T 1pgu_A 450 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT----S 525 (615)
T ss_dssp EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE----C
T ss_pred eEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCccee----E
Confidence 000000 0000 00000000 2235688899999999999999999999999999999875321 1
Q ss_pred EEe-ccCcceEEEeeC----------CCcEEEEeCC-CceEEEEccCC-ceEeeecccccceEEEEEcCCCCeEEEeecC
Q 013545 346 VRL-QTSKPIQLATTQ----------DPAVVFVPCM-TAVKAFDIWSG-KTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412 (441)
Q Consensus 346 ~~~-~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~wd~~~~-~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D 412 (441)
... +......++++| ++.++++++. +.+++||+.++ +.+..+.+|...|++++|+||++ |+|++.|
T Consensus 526 ~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d 604 (615)
T 1pgu_A 526 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD 604 (615)
T ss_dssp CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT
T ss_pred eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCC
Confidence 122 445667889999 8998888765 68999999998 78899999999999999999999 9999999
Q ss_pred CcEEEeCCCC
Q 013545 413 RQILVWCPSR 422 (441)
Q Consensus 413 ~~i~vW~~~~ 422 (441)
++|++|++++
T Consensus 605 ~~v~iw~~~~ 614 (615)
T 1pgu_A 605 ACIKRWNVVL 614 (615)
T ss_dssp SCEEEEEEC-
T ss_pred ceEEEEeeec
Confidence 9999999865
No 55
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.6e-33 Score=275.35 Aligned_cols=275 Identities=21% Similarity=0.351 Sum_probs=215.3
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
.+|...|++++++ +++|++|+.||+|++||+.+++.. ....+|...|.++.+ ++.+|
T Consensus 130 ~~~~~~v~~~~~d---~~~l~~g~~dg~i~iwd~~~~~~~-----------------~~~~~h~~~v~~l~~---~~~~l 186 (435)
T 1p22_A 130 SETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECK-----------------RILTGHTGSVLCLQY---DERVI 186 (435)
T ss_dssp CSSCCCEEEEECC---SSEEEEEESSSCEEEEESSSCCEE-----------------EEECCCSSCEEEEEC---CSSEE
T ss_pred cCCCCcEEEEEEC---CCEEEEEeCCCeEEEEeCCCCeEE-----------------EEEcCCCCcEEEEEE---CCCEE
Confidence 4677889999883 579999999999999999765421 123479999998887 57899
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee---eeecCCCCCeEE
Q 013545 120 VTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS---QTLSGHRDGIMT 195 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~---~~l~~h~~~v~~ 195 (441)
++|+.|++|++||+.+++.+..+.. .+.+..+.+++ .++++|+.|+.|++||++++... ..+.+|...|.+
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 261 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 261 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT-----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC-----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEE
Confidence 9999999999999999998877764 45577777653 37999999999999999988765 678899999999
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
+.| +++ .+++|+.||+|++||++++.++..+
T Consensus 262 ~~~--~~~-~l~s~~~dg~i~vwd~~~~~~~~~~---------------------------------------------- 292 (435)
T 1p22_A 262 VDF--DDK-YIVSASGDRTIKVWNTSTCEFVRTL---------------------------------------------- 292 (435)
T ss_dssp EEE--ETT-EEEEEETTSEEEEEETTTCCEEEEE----------------------------------------------
T ss_pred EEe--CCC-EEEEEeCCCeEEEEECCcCcEEEEE----------------------------------------------
Confidence 999 444 5789999999999999876544332
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceE
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ 355 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 355 (441)
.+|...|.+++| ++.+|++|+.|++|++||+.+++.. .....+......
T Consensus 293 -------------------------~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~----~~~~~h~~~v~~ 341 (435)
T 1p22_A 293 -------------------------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL----RVLEGHEELVRC 341 (435)
T ss_dssp -------------------------ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE----EEECCCSSCEEE
T ss_pred -------------------------cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEE----EEEeCCcCcEEE
Confidence 246677888888 4789999999999999999987632 122223333334
Q ss_pred EEeeCCCcEEEEeCC-CceEEEEccCCc---------eEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 356 LATTQDPAVVFVPCM-TAVKAFDIWSGK---------TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 356 ~~~~~~~~~~~~~~~-~~~~~wd~~~~~---------~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
+++ ++..+++++. +.+++||+.+++ .+.++.+|.+.|.+++| |+++|+||+.|++|++|++.+...
T Consensus 342 ~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 342 IRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp EEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred EEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 444 7777777654 789999997766 78899999999999999 788999999999999999987654
Q ss_pred C
Q 013545 426 D 426 (441)
Q Consensus 426 ~ 426 (441)
.
T Consensus 418 ~ 418 (435)
T 1p22_A 418 A 418 (435)
T ss_dssp -
T ss_pred c
Confidence 3
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.8e-33 Score=273.21 Aligned_cols=286 Identities=21% Similarity=0.337 Sum_probs=225.6
Q ss_pred eeecCCCCce-eEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 37 EIVSPHKGSI-NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 37 ~~~~~H~~~V-~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
..+.+|.+.| +++.++ +++|+||+.||+|++||+.+++.. ....+|...|.++.+++ +
T Consensus 115 ~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~~~-----------------~~~~~h~~~V~~l~~~~-~ 173 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFL-----------------LQLSGHDGGVWALKYAH-G 173 (464)
T ss_dssp EEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEECS-T
T ss_pred EEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCcEE-----------------EEEeCCCcCEEEEEEcC-C
Confidence 4677998775 677774 469999999999999999765421 12348999999999976 3
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce------------
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI------------ 182 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~------------ 182 (441)
+ +|++|+.|++|++||+.+++.+..+. +.+.+.++.+.+.. +..++++|+.|+.|++||++++..
T Consensus 174 ~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 251 (464)
T 3v7d_B 174 G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251 (464)
T ss_dssp T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESS-SCEEEEEEETTSCEEEEECCCCCCC------CCSSE
T ss_pred C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCC-CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce
Confidence 4 99999999999999999999888877 45678888888643 346899999999999999987752
Q ss_pred -----------eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545 183 -----------SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG 251 (441)
Q Consensus 183 -----------~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (441)
+..+.+|...|.++. ++++ ++++++.|++|++||+++++++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~---------------------- 306 (464)
T 3v7d_B 252 VFHTPEENPYFVGVLRGHMASVRTVS--GHGN-IVVSGSYDNTLIVWDVAQMKCLYIL---------------------- 306 (464)
T ss_dssp EESCGGGCTTEEEEECCCSSCEEEEE--EETT-EEEEEETTSCEEEEETTTTEEEEEE----------------------
T ss_pred EeeccCCCeEEEEEccCccceEEEEc--CCCC-EEEEEeCCCeEEEEECCCCcEEEEe----------------------
Confidence 456788999999884 5555 5789999999999999876544322
Q ss_pred ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe
Q 013545 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331 (441)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w 331 (441)
.+|...|.+++|+|++.+|++|+.|++|++|
T Consensus 307 -------------------------------------------------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw 337 (464)
T 3v7d_B 307 -------------------------------------------------SGHTDRIYSTIYDHERKRCISASMDTTIRIW 337 (464)
T ss_dssp -------------------------------------------------CCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred -------------------------------------------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 2466789999999999999999999999999
Q ss_pred eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee
Q 013545 332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG 410 (441)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s 410 (441)
|+.+++.. .....+......+.++ +..+++++. +.+++||+.+++....+. |...+..++|+|++++|++|+
T Consensus 338 d~~~~~~~----~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 338 DLENGELM----YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp ETTTTEEE----EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE
T ss_pred ECCCCcEE----EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec
Confidence 99987532 2222233444444544 566666554 789999999887666553 677889999999999999998
Q ss_pred cCCcEEEeCCCCCCCCC
Q 013545 411 NDRQILVWCPSRHISDG 427 (441)
Q Consensus 411 ~D~~i~vW~~~~~~~~~ 427 (441)
|+.|++|++.+++...
T Consensus 411 -dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 411 -ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp -TTEEEEEETTTCCEEE
T ss_pred -CCeEEEEECCCCcEEe
Confidence 9999999999887553
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-32 Score=272.81 Aligned_cols=280 Identities=20% Similarity=0.279 Sum_probs=221.0
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee-C
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-V 114 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~ 114 (441)
...+.+|.+.|++++|++ ++ +|++|+.||+|++||+.++... ....+|...|.++.+.+ +
T Consensus 155 ~~~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~l~~~~~~ 215 (464)
T 3v7d_B 155 LLQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCT-----------------HVFEGHNSTVRCLDIVEYK 215 (464)
T ss_dssp EEEECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEEEESS
T ss_pred EEEEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEE-----------------EEECCCCCccEEEEEecCC
Confidence 445679999999999986 34 8999999999999999865421 12347999999999986 4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEE-----------------------Ee-cCCeeEEEeeccCCCCccEEEEEeCCC
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMN-----------------------FK-MPGKVYRTAMSPLAASHMLIAAGTEDV 170 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~-----------------------~~-~~~~~~~~~~~~~~~~~~~las~s~d~ 170 (441)
++.++++|+.|++|++||+.++..... +. +...+..+ ++ ...++++|+.|+
T Consensus 216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~---~~~~l~~~~~d~ 290 (464)
T 3v7d_B 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG---HGNIVVSGSYDN 290 (464)
T ss_dssp SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE---ETTEEEEEETTS
T ss_pred CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC---CCCEEEEEeCCC
Confidence 678999999999999999987653321 11 12223332 23 235899999999
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545 171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 171 ~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
.|++||+.+++.+..+.+|...|.++.|+|+++ .+++|+.||+|++||+++++++..+
T Consensus 291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~--------------------- 348 (464)
T 3v7d_B 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTL--------------------- 348 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEE---------------------
T ss_pred eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEE---------------------
Confidence 999999999999999999999999999999987 5789999999999999876554332
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL 330 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~ 330 (441)
.+|...|.+++|+ +.+|++++.|++|++
T Consensus 349 --------------------------------------------------~~h~~~v~~~~~~--~~~l~s~s~dg~v~v 376 (464)
T 3v7d_B 349 --------------------------------------------------QGHTALVGLLRLS--DKFLVSAAADGSIRG 376 (464)
T ss_dssp --------------------------------------------------CCCSSCEEEEEEC--SSEEEEEETTSEEEE
T ss_pred --------------------------------------------------eCCCCcEEEEEEc--CCEEEEEeCCCcEEE
Confidence 2466789999997 579999999999999
Q ss_pred eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEee-ecccccceEEEEEcCCCCeEEEe
Q 013545 331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLT-FRGHYEYVNCCCFSSQDQELYTG 409 (441)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~-l~gh~~~v~~v~fspd~~~l~s~ 409 (441)
||+.+...... .........+++.+++..+++++.+.+++||+.+++.+.. +.+|...|++++|+ ++..++++
T Consensus 377 wd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~ 450 (464)
T 3v7d_B 377 WDANDYSRKFS-----YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAV 450 (464)
T ss_dssp EETTTCCEEEE-----EECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEE
T ss_pred EECCCCceeee-----ecCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEE
Confidence 99998653221 1123345567888999999888888999999999999886 78899999999998 34556667
Q ss_pred ecCCcEEEeC
Q 013545 410 GNDRQILVWC 419 (441)
Q Consensus 410 s~D~~i~vW~ 419 (441)
+.|+.+.+|-
T Consensus 451 ~~~g~~~i~~ 460 (464)
T 3v7d_B 451 EKDGQSFLEI 460 (464)
T ss_dssp EETTEEEEEE
T ss_pred EeCCeEEEEE
Confidence 7788766664
No 58
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=299.99 Aligned_cols=366 Identities=15% Similarity=0.182 Sum_probs=240.3
Q ss_pred CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeec-----ccccCcccceeEEEEeeCCC
Q 013545 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDK-----QHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~V~~~~~~~~~~ 116 (441)
|.+.|++++|+| ++++|++|+.||+|++||+.++... .+.+.. ....+|.+.|.+++|+|.++
T Consensus 97 ~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~-----------~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 97 VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLS-----------SFKLDNLQKSSFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEE-----------EEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccc-----------cceeccccccccccccCCCCeEEEEEccCCC
Confidence 778999999997 5789999999999999999765321 000100 22358999999999998666
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecC-------------------CeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP-------------------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
.++++|+.|++| +||+++++++..+... ..+.++.|+|++ .+|++|+.|+.|++||+
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg---~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS---LHIITIHEDNSLVFWDA 240 (902)
T ss_dssp EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS---SEEEEEETTCCEEEEET
T ss_pred CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC---CEEEEEECCCeEEEEEC
Confidence 799999999999 9999999988877644 558899999864 48999999999999999
Q ss_pred CCCceeee--e---cC-------------CCCCeEEEEEec----CCCcEEEEeecC-----CcEEEEEcC---------
Q 013545 178 ASGAISQT--L---SG-------------HRDGIMTVEWST----SSEWILVTGGCD-----GAIRFWDIR--------- 221 (441)
Q Consensus 178 ~~~~~~~~--l---~~-------------h~~~v~~v~fsp----~~~~~l~s~s~D-----g~I~iWD~~--------- 221 (441)
++++++.. + .+ |...|.+++|+| ++..+|++|+.| ..+++|++.
T Consensus 241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s 320 (902)
T 2oaj_A 241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS 320 (902)
T ss_dssp TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence 99987643 3 12 355799999965 333577888776 379999852
Q ss_pred ---------CCceeeEecc--CC-----------ccc--c-CCC---------CcccccccccCc-cCC-----c--C--
Q 013545 222 ---------RAGCFRVLDQ--SQ-----------SQL--G-RRP---------PLLKRKSLSAGQ-NSS-----V--K-- 257 (441)
Q Consensus 222 ---------~~~~~~~~~~--~~-----------~~~--~-~~~---------~~~~~~~~~~~~-~~~-----~--~-- 257 (441)
.+.+.+.+.. .. .+. + ..+ .......+..+. ... . .
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~ 400 (902)
T 2oaj_A 321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL 400 (902)
T ss_dssp HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence 1122222210 00 000 0 000 000000000000 000 0 0
Q ss_pred ---------------------------CCCCCcccCCCCCccccCcccccCCCCcccccC-----CCcccccccc-----
Q 013545 258 ---------------------------PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH-----PGMLSSQDRA----- 300 (441)
Q Consensus 258 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----- 300 (441)
.............+.+++++++.+.+..+..+. .+.......+
T Consensus 401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~ 480 (902)
T 2oaj_A 401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS 480 (902)
T ss_dssp TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH
T ss_pred CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech
Confidence 000000000111234455555544433332211 1111100001
Q ss_pred ----eeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce-------------------------------------
Q 013545 301 ----TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT------------------------------------- 339 (441)
Q Consensus 301 ----~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~------------------------------------- 339 (441)
.+|...|++|+|+|||++||+|+.|++|+|||+.+++..
T Consensus 481 ~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (902)
T 2oaj_A 481 RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG 560 (902)
T ss_dssp HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence 278889999999999999999999999999999865310
Q ss_pred ----eeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEe-----eec-ccccceEEEEEc-----CCC
Q 013545 340 ----LVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCL-----TFR-GHYEYVNCCCFS-----SQD 403 (441)
Q Consensus 340 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~-----~l~-gh~~~v~~v~fs-----pd~ 403 (441)
+.....+..+...+..++++|++ ++++++. ..+++||+.++..+. .+. +|.+.|++|+|| |||
T Consensus 561 ~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg 639 (902)
T 2oaj_A 561 VRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDG 639 (902)
T ss_dssp CSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS
T ss_pred CCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCC
Confidence 01122233355667789999999 7777765 679999998776653 454 999999999999 885
Q ss_pred ---CeEEEeecCCcEEEeCC---CCCC
Q 013545 404 ---QELYTGGNDRQILVWCP---SRHI 424 (441)
Q Consensus 404 ---~~l~s~s~D~~i~vW~~---~~~~ 424 (441)
++|++|+.|++|++|++ .++.
T Consensus 640 ~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 640 YSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp SEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred CcceEEEEEecCCcEEEEEEecCCCCc
Confidence 89999999999999998 5554
No 59
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.8e-34 Score=313.04 Aligned_cols=368 Identities=18% Similarity=0.229 Sum_probs=258.7
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-C
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-D 115 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~ 115 (441)
..+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++... ....+|...|.++.|++. +
T Consensus 651 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~-----------------~~~~~~~~~v~~~~~~~~~~ 712 (1249)
T 3sfz_A 651 LDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLV-----------------HTYDEHSEQVNCCHFTNKSN 712 (1249)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE-----------------EEEECCSSCEEEEEECSSSS
T ss_pred EEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceE-----------------EEEcCCCCcEEEEEEecCCC
Confidence 34678999999999997 5789999999999999999876421 112479999999999874 3
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee--------
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-------- 186 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l-------- 186 (441)
..++++|+.|++|++||+.++.++..+. +.+.+..+.+++++ .++++++.|+.|++||+.+++....+
T Consensus 713 ~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 789 (1249)
T 3sfz_A 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD---ELLASCSADGTLRLWDVRSANERKSINVKRFFLS 789 (1249)
T ss_dssp CCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST---TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--
T ss_pred ceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC---CEEEEEECCCeEEEEeCCCCcccceecccccccc
Confidence 5589999999999999999999887765 45678888998854 48999999999999998776433221
Q ss_pred -----------------------------------------------cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545 187 -----------------------------------------------SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219 (441)
Q Consensus 187 -----------------------------------------------~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD 219 (441)
.+|...|.+++|+|+++ ++++++.|+.|++||
T Consensus 790 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd 868 (1249)
T 3sfz_A 790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWN 868 (1249)
T ss_dssp ------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEE
T ss_pred cCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEE
Confidence 27888999999999987 578999999999999
Q ss_pred cCCCceeeEeccCCccccCCCC-cccccccccCccCCcCCCC----------------------C---------------
Q 013545 220 IRRAGCFRVLDQSQSQLGRRPP-LLKRKSLSAGQNSSVKPRA----------------------P--------------- 261 (441)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------------------~--------------- 261 (441)
+.++.+...+..+...+..... ................... .
T Consensus 869 ~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1249)
T 3sfz_A 869 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 948 (1249)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEE
T ss_pred cCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEE
Confidence 9988777666543322110000 0000000000000000000 0
Q ss_pred ------C-c--ccCCCCCccccCcccccCCCCccccc---CCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEE
Q 013545 262 ------Q-K--RSANGNGVRQSSVGRIPAKGSVRQRL---HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIR 329 (441)
Q Consensus 262 ------~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~ 329 (441)
. . .......+.+++.++..+.+.....+ ............+|.+.|++++|+|+|++|++++.|++|+
T Consensus 949 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~ 1028 (1249)
T 3sfz_A 949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1028 (1249)
T ss_dssp EEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEE
T ss_pred EecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 0 0 00001112233333332221111110 0000011123457889999999999999999999999999
Q ss_pred EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe
Q 013545 330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG 409 (441)
Q Consensus 330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~ 409 (441)
+||+.+++... ...+......+.+.+++.++.....+.+++||+.+++....+.+|.+.|.+++|+||+++|+++
T Consensus 1029 vwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 1103 (1249)
T 3sfz_A 1029 VWNWQTGDYVF-----LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1103 (1249)
T ss_dssp EEETTTTEEEC-----CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEE
T ss_pred EEECCCCceEE-----EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEE
Confidence 99999875321 1223445566788888877766777899999999999999999999999999999999999999
Q ss_pred ecCCcEEEeCCCCCCCCCccCC
Q 013545 410 GNDRQILVWCPSRHISDGVDAG 431 (441)
Q Consensus 410 s~D~~i~vW~~~~~~~~~~~~~ 431 (441)
+.|++|++|+..++.......+
T Consensus 1104 s~d~~v~iwd~~~~~~~~~l~~ 1125 (1249)
T 3sfz_A 1104 SADKTAKIWSFDLLSPLHELKG 1125 (1249)
T ss_dssp CCSSCCCEECSSSSSCSBCCCC
T ss_pred cCCCcEEEEECCCcceeeeecc
Confidence 9999999999988776555443
No 60
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.3e-33 Score=267.63 Aligned_cols=286 Identities=11% Similarity=0.078 Sum_probs=227.1
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
++..+|.+.|++++|+| ++++|++++.||+|+|||+.++... ... ....+|...|.++.|++ ++
T Consensus 5 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~---------~~~-----~~~~~~~~~v~~~~~~~-~~ 68 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKN---------VDL-----LQSLRYKHPLLCCNFID-NT 68 (342)
T ss_dssp ECSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTE---------EEE-----EEEEECSSCEEEEEEEE-SS
T ss_pred ecccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCcc---------ccc-----eeeeecCCceEEEEECC-CC
Confidence 34569999999999997 5789999999999999998765310 000 11236888999999998 68
Q ss_pred C-EEEEEeCCCcEEEEEC-CCCeEEEEEe--cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC---------Ccee
Q 013545 117 G-LFVTGSYDHYVKVWDT-NCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS---------GAIS 183 (441)
Q Consensus 117 ~-~l~sgs~D~~i~iWd~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~---------~~~~ 183 (441)
. +|++|+.|++|++||+ .++....... +.+.+..+.+++ . .+|++++.|+.|++||+++ ++++
T Consensus 69 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-D---DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp SEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-T---TEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred CcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-C---CEEEEEcCCCeEEEEcccccccccccccCCee
Confidence 8 9999999999999999 8877643333 566788888887 2 4788999999999999988 7777
Q ss_pred eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ 262 (441)
Q Consensus 184 ~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (441)
..+. |...|.+++|+|++ +++++.|+.|++||++. +.....
T Consensus 145 ~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~---------------------------------- 186 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGT---------------------------------- 186 (342)
T ss_dssp SSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCE----------------------------------
T ss_pred eEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccce----------------------------------
Confidence 7777 89999999999875 68899999999999875 321000
Q ss_pred cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCC-----
Q 013545 263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESG----- 336 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~----- 336 (441)
.....|...|.+++|+| ++.+|++++.|++|++|++...
T Consensus 187 -----------------------------------~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 187 -----------------------------------IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp -----------------------------------EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred -----------------------------------eeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 00123556799999999 9999999999999999999876
Q ss_pred CceeeeeeeEEeccC---------cceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccc-ccceEEEEEcCCCCe
Q 013545 337 RNTLVNFETVRLQTS---------KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH-YEYVNCCCFSSQDQE 405 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh-~~~v~~v~fspd~~~ 405 (441)
..... ....+.. ....+++++++.++++++. +.+++||+.+++.+.++.+| ..+|.+++ ||+++
T Consensus 232 ~~~~~---~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~ 306 (342)
T 1yfq_A 232 SSKRF---AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNI 306 (342)
T ss_dssp CTTCE---EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSE
T ss_pred cccce---eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCe
Confidence 11111 2222222 5667889999988887765 68999999999999999999 99999999 99999
Q ss_pred EEEeecCCc-EEEeCC
Q 013545 406 LYTGGNDRQ-ILVWCP 420 (441)
Q Consensus 406 l~s~s~D~~-i~vW~~ 420 (441)
|++|+.|++ .+.|..
T Consensus 307 l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 307 LCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEEECTHHHHCSSS
T ss_pred EEEEecCCcccccccc
Confidence 999999999 666653
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.4e-32 Score=269.21 Aligned_cols=280 Identities=23% Similarity=0.398 Sum_probs=223.2
Q ss_pred eeeecCCCCce-eEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 36 KEIVSPHKGSI-NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 36 ~~~~~~H~~~V-~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
..++.+|.+.| +++.++ +++|++|+.||+|++||+.+++.. ....+|...|.++.+.
T Consensus 111 ~~~l~~h~~~v~~~~~~~---g~~l~sg~~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 111 PKVLKGHDDHVITCLQFC---GNRIVSGSDDNTLKVWSAVTGKCL-----------------RTLVGHTGGVWSSQMR-- 168 (445)
T ss_dssp CEEEECSTTSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEE-----------------EECCCCSSCEEEEEEE--
T ss_pred eEEecccCCCcEEEEEEc---CCEEEEEECCCcEEEEECCCCcEE-----------------EEEcCCCCCEEEEEec--
Confidence 34678999865 666664 579999999999999999865421 1234899999999885
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v 193 (441)
++++++|+.|++|++||+.+++.+..+.. .+.+.++.+.+ ..+++|+.|+.|++||+++++.+..+.+|...|
T Consensus 169 -~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v 242 (445)
T 2ovr_B 169 -DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-----KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242 (445)
T ss_dssp -TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-----TEEEEEETTSEEEEEESSSCCEEEEEECCSSCE
T ss_pred -CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC-----CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccE
Confidence 56999999999999999999998887764 45577766642 469999999999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
.++.| +++ .+++++.||.|++||++++.++..+
T Consensus 243 ~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-------------------------------------------- 275 (445)
T 2ovr_B 243 RCVQY--DGR-RVVSGAYDFMVKVWDPETETCLHTL-------------------------------------------- 275 (445)
T ss_dssp EEEEE--CSS-CEEEEETTSCEEEEEGGGTEEEEEE--------------------------------------------
T ss_pred EEEEE--CCC-EEEEEcCCCEEEEEECCCCcEeEEe--------------------------------------------
Confidence 99999 455 4789999999999999876543322
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
.+|...|.+++| ++.++++|+.|++|++||+.+++... ....+....
T Consensus 276 ---------------------------~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~v 322 (445)
T 2ovr_B 276 ---------------------------QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH----TLTGHQSLT 322 (445)
T ss_dssp ---------------------------CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE----EECCCCSCE
T ss_pred ---------------------------cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE----EEcCCcccE
Confidence 246677999998 88999999999999999999876321 222222222
Q ss_pred eEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecc---cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCC
Q 013545 354 IQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRG---HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDG 427 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~g---h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~ 427 (441)
. .+.+++..+++++ .+.+++||+.+++.+.++.+ |...|.+++|+ +++|++|+.|++|++|++.++....
T Consensus 323 ~--~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 323 S--GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp E--EEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred E--EEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceee
Confidence 2 3334566776665 47899999999999999887 88999999996 5799999999999999999887543
No 62
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-35 Score=291.60 Aligned_cols=251 Identities=11% Similarity=0.092 Sum_probs=188.0
Q ss_pred CCCceeEEEccCCC-C-------cEEEE-------------------eeCCCcEEEEECCCCcccCCCCceeccceeEEe
Q 013545 42 HKGSINSLQVDLTE-E-------RYLLS-------------------GASDSSVAVYDVQRATDYEGGGHIAKHRSVFVV 94 (441)
Q Consensus 42 H~~~V~~l~~s~~~-~-------~~l~s-------------------~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 94 (441)
+.+.|++|+|+|++ + ++||+ ++.|++|+|||+.++... .. ..
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------~~--~~--- 200 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------CV--KV--- 200 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC------EE--EE---
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC------ce--EE---
Confidence 56789999999753 1 45555 668899999998754321 00 00
Q ss_pred ecccccCcccceeEEEEeeC-----CCCEEEEEeCCCcEEEEECCCCeEE-----------EEEe-cCCeeEEEeeccCC
Q 013545 95 DKQHEHGHKYAISSAIWYPV-----DTGLFVTGSYDHYVKVWDTNCTRVV-----------MNFK-MPGKVYRTAMSPLA 157 (441)
Q Consensus 95 ~~~~~~~h~~~V~~~~~~~~-----~~~~l~sgs~D~~i~iWd~~~~~~~-----------~~~~-~~~~~~~~~~~~~~ 157 (441)
....+|.+.|.++.|+|. ++.+||||+.|++|++||+.++... ..+. +.+.+.++.|++.
T Consensus 201 --~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~- 277 (524)
T 2j04_B 201 --QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP- 277 (524)
T ss_dssp --EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-
T ss_pred --EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-
Confidence 112357788999999984 3579999999999999999766321 2232 3456888888763
Q ss_pred CCccEEEEEeCCCcEEEEECCCCc-eeeeecCCCCCeEEE--EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCc
Q 013545 158 ASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMTV--EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234 (441)
Q Consensus 158 ~~~~~las~s~d~~I~vwdl~~~~-~~~~l~~h~~~v~~v--~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~ 234 (441)
..|++|+.|++|++||++++. +...+.+|...|.+| .|+|+++.+|+|||.|++|+|||++++++...+
T Consensus 278 ---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~----- 349 (524)
T 2j04_B 278 ---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT----- 349 (524)
T ss_dssp ---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE-----
T ss_pred ---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc-----
Confidence 279999999999999999874 456789999999999 567776347899999999999999865432221
Q ss_pred cccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeec--cCeEEEEE
Q 013545 235 QLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY--GAVTGLKV 312 (441)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~ 312 (441)
.+|. ..|.+|+|
T Consensus 350 ------------------------------------------------------------------~~~~~~~~v~~v~f 363 (524)
T 2j04_B 350 ------------------------------------------------------------------VSRFRGSNLVPVVY 363 (524)
T ss_dssp ------------------------------------------------------------------EEECSCCSCCCEEE
T ss_pred ------------------------------------------------------------------ccccccCcccceEe
Confidence 1232 24788999
Q ss_pred ccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeeccccc
Q 013545 313 TEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE 392 (441)
Q Consensus 313 s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~ 392 (441)
+|++..+++++.|++|++||+.++.. +.++.+|.+
T Consensus 364 sp~~~~l~s~~~d~tv~lwd~~~~~~---------------------------------------------~~~l~gH~~ 398 (524)
T 2j04_B 364 CPQIYSYIYSDGASSLRAVPSRAAFA---------------------------------------------VHPLVSRET 398 (524)
T ss_dssp ETTTTEEEEECSSSEEEEEETTCTTC---------------------------------------------CEEEEECSS
T ss_pred CCCcCeEEEeCCCCcEEEEECccccc---------------------------------------------ceeeecCCC
Confidence 99999999999999999999876431 234567999
Q ss_pred ceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 393 YVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 393 ~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
.|++|+|||+|++|+||+.|++|++|++.....
T Consensus 399 ~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~ 431 (524)
T 2j04_B 399 TITAIGVSRLHPMVLAGSADGSLIITNAARRLL 431 (524)
T ss_dssp CEEEEECCSSCCBCEEEETTTEEECCBSCSSTT
T ss_pred ceEEEEeCCCCCeEEEEECCCEEEEEechHhhc
Confidence 999999999999999999999999999876533
No 63
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.6e-33 Score=260.97 Aligned_cols=253 Identities=22% Similarity=0.419 Sum_probs=208.4
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
..+|...|.++.|+| ++.+|++|+.|++|++||+.+++....+. +...+..+.+++++ .+|++++.|+.|++||+
T Consensus 19 ~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 19 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDV 94 (312)
T ss_dssp ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEET
T ss_pred EcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC---CEEEEECCCCEEEEEEC
Confidence 458999999999987 78899999999999999999988877665 34568888998854 48999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
++++.+..+.+|...|.++.|+|+++ +|++|+.|++|++||++++++...+
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~---------------------------- 145 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTL---------------------------- 145 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEE----------------------------
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEe----------------------------
Confidence 99999999999999999999999987 5799999999999999876543322
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
..|..+|.+++|+|++.+|++++.|++|++||+.+++
T Consensus 146 -------------------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 146 -------------------------------------------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp -------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred -------------------------------------------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 2466789999999999999999999999999999875
Q ss_pred ceeeeeeeEEecc-CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEE--EE-cCCCCeEEEeecC
Q 013545 338 NTLVNFETVRLQT-SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCC--CF-SSQDQELYTGGND 412 (441)
Q Consensus 338 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v--~f-spd~~~l~s~s~D 412 (441)
... ...... .....+++++++..+++++. +.+++||+.+++.+..+.+|...+.++ .| .+++++|++|+.|
T Consensus 183 ~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 258 (312)
T 4ery_A 183 CLK----TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258 (312)
T ss_dssp EEE----EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT
T ss_pred eee----EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC
Confidence 321 111112 23445788999998887755 689999999999999999998764432 33 4678899999999
Q ss_pred CcEEEeCCCCCCCCCccCC
Q 013545 413 RQILVWCPSRHISDGVDAG 431 (441)
Q Consensus 413 ~~i~vW~~~~~~~~~~~~~ 431 (441)
++|++|++.++.......|
T Consensus 259 g~i~vwd~~~~~~~~~~~~ 277 (312)
T 4ery_A 259 NLVYIWNLQTKEIVQKLQG 277 (312)
T ss_dssp SCEEEEETTTCCEEEEECC
T ss_pred CEEEEEECCCchhhhhhhc
Confidence 9999999988775544433
No 64
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-33 Score=273.21 Aligned_cols=254 Identities=20% Similarity=0.334 Sum_probs=208.1
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
..||.+.|.++.|+| ++.+|+|||.|++|++||+.+++.+..+..+ ..+..++++|++ .+|++|+.|+.|++||+
T Consensus 62 l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g---~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG---QSVACGGLDSACSIFNL 137 (380)
T ss_dssp ECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS---SEEEECCSSSCCEEEEC
T ss_pred ccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC---CEEEEeeCCCcEEEEEC
Confidence 458999999999998 7889999999999999999999988877653 457778888754 58999999999999999
Q ss_pred CCCc-------eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545 178 ASGA-------ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 178 ~~~~-------~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
.+.. ....+.+|.+.|.++.|+|++...|++|+.|++|++||++++.++..+...
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~------------------ 199 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE------------------ 199 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC------------------
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc------------------
Confidence 7542 345688999999999999986656899999999999999987655443110
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEE
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIR 329 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~ 329 (441)
...+|...|.+++|+| ++.+|++|+.|++|+
T Consensus 200 ------------------------------------------------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~ 231 (380)
T 3iz6_a 200 ------------------------------------------------FPSGHTADVLSLSINSLNANMFISGSCDTTVR 231 (380)
T ss_dssp ------------------------------------------------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred ------------------------------------------------cCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence 0135778899999987 889999999999999
Q ss_pred EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccccc-------ceEEEEEcC
Q 013545 330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYE-------YVNCCCFSS 401 (441)
Q Consensus 330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~-------~v~~v~fsp 401 (441)
+||+....... .....+......++++|++..+++++. +.+++||+.+++.+..+..|.. .|.+++|+|
T Consensus 232 ~wd~~~~~~~~---~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 232 LWDLRITSRAV---RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp EEETTTTCCCC---EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred EEECCCCCcce---EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence 99997543221 222334566778999999999888866 6899999999998888766543 489999999
Q ss_pred CCCeEEEeecCCcEEEeCCCCCCC
Q 013545 402 QDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 402 d~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
+|++|++|+.|+.|++||..++..
T Consensus 309 ~g~~l~~g~~dg~i~vwd~~~~~~ 332 (380)
T 3iz6_a 309 SGRLLFAGYSNGDCYVWDTLLAEM 332 (380)
T ss_dssp SSSEEEEECTTSCEEEEETTTCCE
T ss_pred CCCEEEEEECCCCEEEEECCCCce
Confidence 999999999999999999876653
No 65
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=269.75 Aligned_cols=261 Identities=19% Similarity=0.323 Sum_probs=204.8
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-C
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-D 115 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~ 115 (441)
.++.+|.+.|++++|+| ++++|++|+.||+|+|||+..... ..+ ....+|...|.++.|++. +
T Consensus 5 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~----------~~~-----~~~~~h~~~v~~~~~~~~~~ 68 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETH----------KLI-----DTLTGHEGPVWRVDWAHPKF 68 (379)
T ss_dssp CCEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEE----------EEE-----EEECCCSSCEEEEEECCGGG
T ss_pred EEecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcc----------eee-----eEecCCCCcEEEEEeCCCCC
Confidence 45679999999999997 578999999999999999863321 001 123479999999999763 3
Q ss_pred CCEEEEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--eeeeecCCC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTLSGHR 190 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~~~~l~~h~ 190 (441)
+.+|++|+.|++|++||+.+++ .+..+. +...+.++.+++... ..+|++++.|+.|++||+.++. ....+.+|.
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-CSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCC-CCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 7899999999999999999887 444444 456788899988621 3479999999999999999874 345677999
Q ss_pred CCeEEEEEec-------------CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 191 DGIMTVEWST-------------SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 191 ~~v~~v~fsp-------------~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
..|.+++|+| ++. +|++++.|+.|++||++.+.....+
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~---------------------------- 198 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVL---------------------------- 198 (379)
T ss_dssp TCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEE----------------------------
T ss_pred CceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceee----------------------------
Confidence 9999999999 465 6789999999999999754311100
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC---CCEEEEeecCCcEEEeeCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED---GMYLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d---g~~l~sgs~D~~i~~wd~~ 334 (441)
.....+|...|.+++|+|+ +.+|++++.|++|++||+.
T Consensus 199 ---------------------------------------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 199 ---------------------------------------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp ---------------------------------------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ---------------------------------------EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 0012357788999999999 8999999999999999998
Q ss_pred CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc
Q 013545 335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ 414 (441)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~ 414 (441)
++..... ..+.....|...|++++|+||+++|++++.|+.
T Consensus 240 ~~~~~~~----------------------------------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 279 (379)
T 3jrp_A 240 NEQGPWK----------------------------------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 279 (379)
T ss_dssp STTSCCE----------------------------------------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSS
T ss_pred CCCccce----------------------------------------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCc
Confidence 7542110 001122448889999999999999999999999
Q ss_pred EEEeCCCC
Q 013545 415 ILVWCPSR 422 (441)
Q Consensus 415 i~vW~~~~ 422 (441)
|++|++..
T Consensus 280 i~iw~~~~ 287 (379)
T 3jrp_A 280 VTLWKENL 287 (379)
T ss_dssp EEEEEEEE
T ss_pred EEEEeCCC
Confidence 99999873
No 66
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=265.47 Aligned_cols=250 Identities=18% Similarity=0.239 Sum_probs=199.5
Q ss_pred ccCccc-ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEE----ecCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545 99 EHGHKY-AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNF----KMPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173 (441)
Q Consensus 99 ~~~h~~-~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~las~s~d~~I~ 173 (441)
..+|.. .|.+++|+| ++.+||||+.|++|+|||+.++...... .+.+.+.+++++|++ .+|++|+.|+.|+
T Consensus 11 ~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g---~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG---NYLASASFDATTC 86 (345)
T ss_dssp ECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS---SEEEEEETTSCEE
T ss_pred ecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC---CEEEEEECCCcEE
Confidence 457887 899999987 7899999999999999999887654322 234668899999864 4899999999999
Q ss_pred EEECCCCc--eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545 174 LCDIASGA--ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG 251 (441)
Q Consensus 174 vwdl~~~~--~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (441)
+||++++. ++..+.+|...|.+++|+|+++ +|++|+.|++|++||++.+.....+
T Consensus 87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~---------------------- 143 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECV---------------------- 143 (345)
T ss_dssp EEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEE----------------------
T ss_pred EEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEE----------------------
Confidence 99998774 5678999999999999999987 5799999999999998754211110
Q ss_pred ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe
Q 013545 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331 (441)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w 331 (441)
....+|...|.+++|+|++.+|++|+.|++|++|
T Consensus 144 ----------------------------------------------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w 177 (345)
T 3fm0_A 144 ----------------------------------------------SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177 (345)
T ss_dssp ----------------------------------------------EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEE
T ss_pred ----------------------------------------------EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEE
Confidence 0123577889999999999999999999999999
Q ss_pred eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCC---------------ceEeeecc-cccce
Q 013545 332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSG---------------KTCLTFRG-HYEYV 394 (441)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~---------------~~~~~l~g-h~~~v 394 (441)
|+.+++.. .......+......++++|++..+++++. +.+++|+.... +++.++.+ |...|
T Consensus 178 ~~~~~~~~--~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 255 (345)
T 3fm0_A 178 REEEDDWV--CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI 255 (345)
T ss_dssp EEETTEEE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred EecCCCEE--EEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcE
Confidence 98765421 12233334556678899999998888765 68999997432 23445665 88999
Q ss_pred EEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545 395 NCCCFSSQDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 395 ~~v~fspd~~~l~s~s~D~~i~vW~~~~~ 423 (441)
.+++|+|++..|++++.|++|++|+....
T Consensus 256 ~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 256 YDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred EEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 99999999999999999999999987654
No 67
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3e-33 Score=263.99 Aligned_cols=284 Identities=18% Similarity=0.250 Sum_probs=225.9
Q ss_pred CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 121 (441)
|.+.|++++|+| ++++++.+..++.+.+|+..... ..+ ...+|...|.++.+++ ++.+|++
T Consensus 8 ~~~~v~~~~~s~-dg~~~~~~~~~~~~~~~~~~~~~-----------~~~------~~~~h~~~v~~~~~~~-~~~~l~~ 68 (337)
T 1gxr_A 8 GSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPRHA-----------RQI------NTLNHGEVVCAVTISN-PTRHVYT 68 (337)
T ss_dssp EEEECCEEEECS-SSCEEECCCCTTSSSSTTCCSEE-----------EEE------EEECCSSCCCEEEECS-SSSEEEE
T ss_pred cCCceeEEEECC-CCCEEEeecCCCcEeccccCCcc-----------ccc------eeccCCCceEEEEEec-CCcEEEE
Confidence 357899999997 57889888888877666433211 001 1127999999999987 7889999
Q ss_pred EeCCCcEEEEECCCCeE---EEEE---ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--eeeeecCCCCCe
Q 013545 122 GSYDHYVKVWDTNCTRV---VMNF---KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTLSGHRDGI 193 (441)
Q Consensus 122 gs~D~~i~iWd~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~~~~l~~h~~~v 193 (441)
++ |++|++||+.++.. +..+ .+...+..+.++++. .+|++++.|+.|++||+++++ ....+.+|...|
T Consensus 69 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 69 GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG---CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS---SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred cC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC---CEEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 98 99999999987642 2333 245678888998854 478899999999999999987 566788999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
.+++|+|+++ .|++++.||.|++||+++++....+
T Consensus 145 ~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~-------------------------------------------- 179 (337)
T 1gxr_A 145 YALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQF-------------------------------------------- 179 (337)
T ss_dssp EEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEE--------------------------------------------
T ss_pred EEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeee--------------------------------------------
Confidence 9999999987 5789999999999999875433222
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
..|...|.+++|+|++.+|++++.|+.|++||+.+++... .. ......
T Consensus 180 ---------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----~~-~~~~~v 227 (337)
T 1gxr_A 180 ---------------------------QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ----QH-DFTSQI 227 (337)
T ss_dssp ---------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EE-ECSSCE
T ss_pred ---------------------------ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEe----ee-cCCCce
Confidence 2466789999999999999999999999999999875321 11 124456
Q ss_pred eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
..+++++++..+++++. +.+++||+.+++. ..+.+|..+|.+++|+|++++|++++.|+.|++|++.++...
T Consensus 228 ~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 67888999998887764 7899999988765 467889999999999999999999999999999999877643
No 68
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1e-32 Score=263.79 Aligned_cols=251 Identities=20% Similarity=0.301 Sum_probs=206.3
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
..+|...|.++.|+| ++.+|+|||.|++|++||..++.....+..+ ..+..+.++|++ .+|++|+.|+.+++|++
T Consensus 60 l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g---~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG---CAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS---SEEEEESTTSEEEEEEC
T ss_pred ecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC---CEEEEeeCCCCEEEEEE
Confidence 358999999999987 7889999999999999999988887776653 457788888864 48999999999999998
Q ss_pred CCC------ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545 178 ASG------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG 251 (441)
Q Consensus 178 ~~~------~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (441)
... .....+.+|...|.++.|+|++. .|++++.|++|++||+++++++..+
T Consensus 136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~---------------------- 192 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSF---------------------- 192 (354)
T ss_dssp CCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEE----------------------
T ss_pred eccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEE----------------------
Confidence 654 23466789999999999999987 4789999999999999876544332
Q ss_pred ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc--CCCEEEEeecCCcEE
Q 013545 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--DGMYLLSAGSDSRIR 329 (441)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--dg~~l~sgs~D~~i~ 329 (441)
.+|...|.+++|+| ++.+|++|+.|++|+
T Consensus 193 -------------------------------------------------~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~ 223 (354)
T 2pbi_B 193 -------------------------------------------------HGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223 (354)
T ss_dssp -------------------------------------------------ECCSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred -------------------------------------------------cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence 35777899999987 578999999999999
Q ss_pred EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccc--ccceEEEEEcCCCCeE
Q 013545 330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH--YEYVNCCCFSSQDQEL 406 (441)
Q Consensus 330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh--~~~v~~v~fspd~~~l 406 (441)
+||+.+++.. .....+......++++|++..+++++. ..+++||+.+++.+..+..+ ...+.+++|+|++++|
T Consensus 224 ~wd~~~~~~~----~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 299 (354)
T 2pbi_B 224 VWDMRSGQCV----QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL 299 (354)
T ss_dssp EEETTTCCEE----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred EEECCCCcEE----EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence 9999987632 222334556677899999998888765 68999999988877766544 3578999999999999
Q ss_pred EEeecCCcEEEeCCCCCCCCCcc
Q 013545 407 YTGGNDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 407 ~s~s~D~~i~vW~~~~~~~~~~~ 429 (441)
++|+.|++|++|++.++......
T Consensus 300 ~~g~~d~~i~vwd~~~~~~~~~l 322 (354)
T 2pbi_B 300 FAGYNDYTINVWDVLKGSRVSIL 322 (354)
T ss_dssp EEEETTSCEEEEETTTCSEEEEE
T ss_pred EEEECCCcEEEEECCCCceEEEE
Confidence 99999999999999877644333
No 69
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.5e-33 Score=268.91 Aligned_cols=249 Identities=24% Similarity=0.417 Sum_probs=201.4
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-------------------eeEEEeeccCCCCcc
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG-------------------KVYRTAMSPLAASHM 161 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 161 (441)
+|...|.++.|+| ++.+||+|+ |+++++|++.+++.+..+.... .+.++.|++++ .
T Consensus 62 ~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg---~ 136 (393)
T 1erj_A 62 DHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG---K 136 (393)
T ss_dssp ECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS---S
T ss_pred CCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC---C
Confidence 6999999999987 788999976 7899999999998876654321 26778888754 4
Q ss_pred EEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCC
Q 013545 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPP 241 (441)
Q Consensus 162 ~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~ 241 (441)
+|++|+.|+.|++||+++++.+..+.+|...|.+++|+|+++ .|++++.|++|++||++++.+...+
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~------------ 203 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTL------------ 203 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEE------------
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEE------------
Confidence 899999999999999999999999999999999999999998 5789999999999999876543322
Q ss_pred cccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEE
Q 013545 242 LLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLL 320 (441)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~ 320 (441)
.+...+.+++|+| ++.+|+
T Consensus 204 ------------------------------------------------------------~~~~~v~~~~~~~~~~~~l~ 223 (393)
T 1erj_A 204 ------------------------------------------------------------SIEDGVTTVAVSPGDGKYIA 223 (393)
T ss_dssp ------------------------------------------------------------ECSSCEEEEEECSTTCCEEE
T ss_pred ------------------------------------------------------------EcCCCcEEEEEECCCCCEEE
Confidence 1234588999999 899999
Q ss_pred EeecCCcEEEeeCCCCCceeeeeee----EEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccC------------Cce
Q 013545 321 SAGSDSRIRLWDVESGRNTLVNFET----VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWS------------GKT 383 (441)
Q Consensus 321 sgs~D~~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~------------~~~ 383 (441)
+|+.|++|++||+.+++.... +.. ...+......+++++++..+++++. +.+++||+.+ +.+
T Consensus 224 ~~s~d~~v~iwd~~~~~~~~~-~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~ 302 (393)
T 1erj_A 224 AGSLDRAVRVWDSETGFLVER-LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302 (393)
T ss_dssp EEETTSCEEEEETTTCCEEEE-EC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CE
T ss_pred EEcCCCcEEEEECCCCcEEEe-ecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcc
Confidence 999999999999988753211 110 0123345667899999998888765 6899999865 345
Q ss_pred EeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545 384 CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV 428 (441)
Q Consensus 384 ~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~ 428 (441)
..++.+|...|.+++|+|++++|+||+.|++|++|++.++.....
T Consensus 303 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~ 347 (393)
T 1erj_A 303 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347 (393)
T ss_dssp EEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred eEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 668899999999999999999999999999999999988764433
No 70
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=262.11 Aligned_cols=295 Identities=12% Similarity=0.101 Sum_probs=225.4
Q ss_pred eeeecCCCCceeEEEccCCC--CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee
Q 013545 36 KEIVSPHKGSINSLQVDLTE--ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP 113 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~ 113 (441)
..++.+|.+.|++++|+|++ +++|++|+.||+|+|||+.+... .+ .....+|...|.++.|+|
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------~~----~~~~~~h~~~v~~~~~~~ 96 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------TI----PKAQQMHTGPVLDVCWSD 96 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-----------EE----EEEEEECSSCEEEEEECT
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-----------ee----EEEeccccCCEEEEEECc
Confidence 34567999999999999864 68999999999999999976221 00 011247999999999987
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe
Q 013545 114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI 193 (441)
Q Consensus 114 ~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v 193 (441)
++.+|++++.|++|++||+.+++.+....+.+.+.++.+.+.. +..+|++++.|+.|++||+++++.+..+..|. .+
T Consensus 97 -~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~ 173 (368)
T 3mmy_A 97 -DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RC 173 (368)
T ss_dssp -TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CE
T ss_pred -CCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCC-Cc
Confidence 7889999999999999999999988877788889999984322 34578999999999999999999988888765 67
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
.++.+.++ .+++++.|+.+++||++.........
T Consensus 174 ~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~------------------------------------------- 207 (368)
T 3mmy_A 174 YCADVIYP---MAVVATAERGLIVYQLENQPSEFRRI------------------------------------------- 207 (368)
T ss_dssp EEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEEC-------------------------------------------
T ss_pred eEEEecCC---eeEEEeCCCcEEEEEeccccchhhhc-------------------------------------------
Confidence 77777754 46778899999999997542111000
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE----EEEeecCCcEEEeeCCCCCceeeeeeeEEec
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY----LLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 349 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~----l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~ 349 (441)
...+...+..+++.++... +++++.|+.|++||+........ ......+
T Consensus 208 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~-~~~~~~~ 260 (368)
T 3mmy_A 208 --------------------------ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKD-NFTFKCH 260 (368)
T ss_dssp --------------------------CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHH-SEEEECS
T ss_pred --------------------------cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccc-ceeeeee
Confidence 0011123455556555544 99999999999999987642100 0111111
Q ss_pred cC------------cceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEE
Q 013545 350 TS------------KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQIL 416 (441)
Q Consensus 350 ~~------------~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~ 416 (441)
.. ....+++++++.++++++. +.+++||+.+++.+.++.+|..+|.+++|+|||++|++|+.|+..+
T Consensus 261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~ 340 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSK 340 (368)
T ss_dssp EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTT
T ss_pred ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccc
Confidence 11 3567889999988888754 6899999999999999999999999999999999999999998666
Q ss_pred EeCCC
Q 013545 417 VWCPS 421 (441)
Q Consensus 417 vW~~~ 421 (441)
.|+..
T Consensus 341 ~~~~~ 345 (368)
T 3mmy_A 341 GHEFY 345 (368)
T ss_dssp CGGGC
T ss_pred ccccc
Confidence 66543
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.3e-32 Score=291.06 Aligned_cols=292 Identities=17% Similarity=0.286 Sum_probs=238.6
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
...+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++... ....+|...|.++.|+| +
T Consensus 6 ~~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~-----------------~~~~~~~~~v~~~~~s~-~ 66 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEV-----------------RSIQVTETPVRAGKFIA-R 66 (814)
T ss_dssp EEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEE-----------------EEEECCSSCEEEEEEEG-G
T ss_pred ceeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceE-----------------EEEecCCCcEEEEEEeC-C
Confidence 356789999999999997 5789999999999999999765321 11237889999999988 7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCe
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGI 193 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v 193 (441)
+.+|++|+.|++|++||+.+++.+..+. +.+.+..+.+++++ ..|++++.|+.|++||++++ .....+.+|...|
T Consensus 67 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v 143 (814)
T 3mkq_A 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV 143 (814)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC---CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcE
Confidence 8899999999999999999999888776 56778899999864 47899999999999999987 6678889999999
Q ss_pred EEEEEec-CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545 194 MTVEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272 (441)
Q Consensus 194 ~~v~fsp-~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (441)
.+++|+| ++. .|++++.||+|++||++.+.....+
T Consensus 144 ~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~------------------------------------------- 179 (814)
T 3mkq_A 144 MCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTL------------------------------------------- 179 (814)
T ss_dssp EEEEEETTEEE-EEEEEETTSEEEEEETTCSSCSEEE-------------------------------------------
T ss_pred EEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcceeEE-------------------------------------------
Confidence 9999999 554 6899999999999998754321111
Q ss_pred ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc--CCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 350 (441)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~ 350 (441)
...|...+..++|+| ++.+|++++.|++|++||+.+++. ......+.
T Consensus 180 ---------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~ 228 (814)
T 3mkq_A 180 ---------------------------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC----VATLEGHM 228 (814)
T ss_dssp ---------------------------ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE----EEEEECCS
T ss_pred ---------------------------ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE----EEEEcCCC
Confidence 012336688999999 999999999999999999987653 22233344
Q ss_pred CcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCe-EEEeecCCcEEEeCCCCCC
Q 013545 351 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE-LYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~-l~s~s~D~~i~vW~~~~~~ 424 (441)
.....+++++++..+++++. +.+++||+.+++....+..|...|++++|+|+++. +++++.|+.+.+|+.....
T Consensus 229 ~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 55667889999998888765 78999999999999999999999999999999874 3455557778888876543
No 72
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.3e-32 Score=267.38 Aligned_cols=278 Identities=21% Similarity=0.343 Sum_probs=221.7
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
...+.+|.+.|++++|+ +++|++|+.||+|++||+.+++.. ....+|...|.++.+.
T Consensus 152 ~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~~~~~--- 208 (445)
T 2ovr_B 152 LRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGECI-----------------HTLYGHTSTVRCMHLH--- 208 (445)
T ss_dssp EEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEEE---
T ss_pred EEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEE-----------------EEECCCCCcEEEEEec---
Confidence 34567899999999997 358999999999999999865421 1234799999988884
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~ 194 (441)
++.+++|+.|++|++||+.+++.+..+.. .+.+.++.+. ..++++|+.|+.|++||+++++.+..+.+|...|.
T Consensus 209 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 283 (445)
T 2ovr_B 209 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-----GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 283 (445)
T ss_dssp TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-----SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC-----CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceE
Confidence 56899999999999999999998877764 4556666662 34788999999999999999999999999999999
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS 274 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (441)
++.| ++. .+++++.|++|++||++++++...+
T Consensus 284 ~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~--------------------------------------------- 315 (445)
T 2ovr_B 284 SLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTL--------------------------------------------- 315 (445)
T ss_dssp EEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEE---------------------------------------------
T ss_pred EEEE--CCC-EEEEEeCCCeEEEEECCCCCEEEEE---------------------------------------------
Confidence 9999 455 5789999999999999876554332
Q ss_pred CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe---ccC
Q 013545 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL---QTS 351 (441)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~---~~~ 351 (441)
.+|...+.++.+ ++.+|++|+.|++|++||+.+++... .... +..
T Consensus 316 --------------------------~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~ 363 (445)
T 2ovr_B 316 --------------------------TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQ----TLQGPNKHQS 363 (445)
T ss_dssp --------------------------CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE----EECSTTSCSS
T ss_pred --------------------------cCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEE----EEccCCCCCC
Confidence 234556777666 56799999999999999998875321 1111 222
Q ss_pred cceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeee-----cccccceEEEEEcCCCCeEEEeecCCc----EEEeCCC
Q 013545 352 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF-----RGHYEYVNCCCFSSQDQELYTGGNDRQ----ILVWCPS 421 (441)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l-----~gh~~~v~~v~fspd~~~l~s~s~D~~----i~vW~~~ 421 (441)
....+++ ++..+++++. +.+++||+.+++.+..+ .+|.+.|++++|+|++.+|++|+.|++ |.|||..
T Consensus 364 ~v~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 364 AVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp CEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CEEEEEE--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 3334444 4667777654 78999999999998888 588999999999999999999999998 9999987
Q ss_pred CC
Q 013545 422 RH 423 (441)
Q Consensus 422 ~~ 423 (441)
..
T Consensus 442 ~~ 443 (445)
T 2ovr_B 442 VD 443 (445)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 73
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-32 Score=258.67 Aligned_cols=246 Identities=19% Similarity=0.304 Sum_probs=200.6
Q ss_pred ccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC-----CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCC
Q 013545 97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-----TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDV 170 (441)
Q Consensus 97 ~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~ 170 (441)
....||++.|.++++++.++.+|+|||.|++|++||+.. +.++..+. +...+..+.+++++ .+|++|+.|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg---~~l~s~s~D~ 87 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG---AYALSASWDK 87 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS---SEEEEEETTS
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC---CEEEEEeCCC
Confidence 345699999999999986668999999999999999853 22344454 34568888888854 4899999999
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545 171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 171 ~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
.|++||+++++.+..+.+|...|.+++|+|++. +|++|+.|++|++||++.. ++..
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~-~~~~---------------------- 143 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQ-CLAT---------------------- 143 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSC-EEEE----------------------
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-eEEE----------------------
Confidence 999999999999999999999999999999987 5799999999999998632 2111
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC------CCEEEEeec
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED------GMYLLSAGS 324 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d------g~~l~sgs~ 324 (441)
..+|...|.+++|+|+ +.+|++++.
T Consensus 144 -------------------------------------------------~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~ 174 (319)
T 3frx_A 144 -------------------------------------------------LLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174 (319)
T ss_dssp -------------------------------------------------ECCCSSCEEEEEECCC------CCEEEEEET
T ss_pred -------------------------------------------------EeccCCcEEEEEEccCCCCCCCccEEEEEeC
Confidence 2356778999999985 458999999
Q ss_pred CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCC
Q 013545 325 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD 403 (441)
Q Consensus 325 D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~ 403 (441)
|++|++||+.+.+.. .....+......++++|++.++++++. +.+++||+.+++.+.++..| .+|.+++|+|++
T Consensus 175 d~~i~~wd~~~~~~~----~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~ 249 (319)
T 3frx_A 175 DKMVKAWNLNQFQIE----ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNR 249 (319)
T ss_dssp TSCEEEEETTTTEEE----EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSS
T ss_pred CCEEEEEECCcchhh----eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCC
Confidence 999999999876421 122234456677899999999888765 68999999999999998865 679999999999
Q ss_pred CeEEEeecCCcEEEeCCCCCC
Q 013545 404 QELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 404 ~~l~s~s~D~~i~vW~~~~~~ 424 (441)
.+|++++. ..|++|+++...
T Consensus 250 ~~la~~~~-~~i~v~~~~~~~ 269 (319)
T 3frx_A 250 YWLAAATA-TGIKVFSLDPQY 269 (319)
T ss_dssp SEEEEEET-TEEEEEEETTEE
T ss_pred CEEEEEcC-CCcEEEEeCcCe
Confidence 99998775 459999987654
No 74
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-32 Score=259.85 Aligned_cols=247 Identities=16% Similarity=0.175 Sum_probs=187.5
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC--eEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT--RVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~ 173 (441)
..+|+..|.++.+++ + +||||+.|++|++||+..+ ..+..+. +.+.+.++.++|++ .+|++|+.|+.|+
T Consensus 10 ~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---~~las~s~D~~v~ 83 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT---SLLAAGSFDSTVS 83 (330)
T ss_dssp EECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS---SEEEEEETTSCEE
T ss_pred eccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC---CEEEEEeCCCcEE
Confidence 358999999999975 2 9999999999999999875 3444442 45678999999864 4899999999999
Q ss_pred EEECCC-------CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccc
Q 013545 174 LCDIAS-------GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKR 245 (441)
Q Consensus 174 vwdl~~-------~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~ 245 (441)
+||++. .+++..+.+|...|.+++|+|+++ +|++|+.|++|++||++... ....
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~----------------- 145 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYEC----------------- 145 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEE-----------------
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEE-----------------
Confidence 999953 345678899999999999999987 57999999999999985321 0000
Q ss_pred cccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC
Q 013545 246 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD 325 (441)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 325 (441)
...+.+|...|++|+|+|++.+|++|+.|
T Consensus 146 ---------------------------------------------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 174 (330)
T 2hes_X 146 ---------------------------------------------------ISVLQEHSQDVKHVIWHPSEALLASSSYD 174 (330)
T ss_dssp ---------------------------------------------------EEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred ---------------------------------------------------EEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence 00124678889999999999999999999
Q ss_pred CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC--CcEEEEeCC-CceEEEEccCC--------ceEeeecc-cccc
Q 013545 326 SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD--PAVVFVPCM-TAVKAFDIWSG--------KTCLTFRG-HYEY 393 (441)
Q Consensus 326 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~wd~~~~--------~~~~~l~g-h~~~ 393 (441)
++|++||+.++.. .....+..+......++++++ +..+++++. ..+++||+.++ .....+.+ |...
T Consensus 175 ~~i~iW~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~ 252 (330)
T 2hes_X 175 DTVRIWKDYDDDW--ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ 252 (330)
T ss_dssp SCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC
T ss_pred CeEEEEECCCCCe--eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccc
Confidence 9999999876421 112233334455667888887 556666654 78999998664 34556665 9999
Q ss_pred eEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545 394 VNCCCFSSQDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 394 v~~v~fspd~~~l~s~s~D~~i~vW~~~~~ 423 (441)
|.+++|+|++ +|++++.|++|+||+..++
T Consensus 253 v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 253 VYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred eEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 9999999765 8999999999999998654
No 75
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=270.61 Aligned_cols=303 Identities=12% Similarity=0.266 Sum_probs=214.2
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcc------------cceeE
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK------------YAISS 108 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V~~ 108 (441)
.|.+.|++++|+| ++++||+|+.||.|+|||+.++...... ....+.. .....+|. ..|.+
T Consensus 26 ~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~-----~~~~~~~-~~~~~~h~~~~~~~~~~~~~~~V~~ 98 (447)
T 3dw8_B 26 AEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSH-----SRGEYNV-YSTFQSHEPEFDYLKSLEIEEKINK 98 (447)
T ss_dssp CGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CC-----CCCCEEE-EEEEECCCCEEEGGGTEEECCCCCE
T ss_pred cccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcc-----cccceeE-ecccccccccccccccccccCceEE
Confidence 5789999999997 6789999999999999999765421000 0000000 01234787 88999
Q ss_pred EEEeeCCC-CEEEEEeCCCcEEEEECCCCeEE---------------------------------------EEE--ecCC
Q 013545 109 AIWYPVDT-GLFVTGSYDHYVKVWDTNCTRVV---------------------------------------MNF--KMPG 146 (441)
Q Consensus 109 ~~~~~~~~-~~l~sgs~D~~i~iWd~~~~~~~---------------------------------------~~~--~~~~ 146 (441)
+.|+|... .+|++++.|++|++||+.++... ..+ .+..
T Consensus 99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 99998422 69999999999999998764431 111 2345
Q ss_pred eeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-Cceee-------eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEE
Q 013545 147 KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQ-------TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW 218 (441)
Q Consensus 147 ~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~-------~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iW 218 (441)
.+.++.+++++ .+|++| .|+.|++||+++ ++.+. .+.+|...|.+++|+|++..+|++|+.||+|++|
T Consensus 179 ~v~~~~~~~~~---~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 179 HINSISINSDY---ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp CCCEEEECTTS---SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred ceEEEEEcCCC---CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 67888888853 478888 799999999984 44443 3678999999999999984478999999999999
Q ss_pred EcCCCce----eeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcc
Q 013545 219 DIRRAGC----FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGML 294 (441)
Q Consensus 219 D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (441)
|++++.+ ...+......
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------- 275 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDP----------------------------------------------------------- 275 (447)
T ss_dssp ETTTCSSSCTTCEEECCC--------------------------------------------------------------
T ss_pred ECcCCccccceeeEeccCCCc-----------------------------------------------------------
Confidence 9987643 2222110000
Q ss_pred cccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC-CCceeeeeeeEEeccCc---------------ceEEEe
Q 013545 295 SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES-GRNTLVNFETVRLQTSK---------------PIQLAT 358 (441)
Q Consensus 295 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~-~~~~~~~~~~~~~~~~~---------------~~~~~~ 358 (441)
.......+|.+.|.+++|+|+|.+|++++. ++|++||+.+ ++.. ..+ ..+... ...+++
T Consensus 276 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~-~~~---~~~~~~~~~l~~~~~~~~i~~~~~~~~ 350 (447)
T 3dw8_B 276 SNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV-ETY---QVHEYLRSKLCSLYENDCIFDKFECCW 350 (447)
T ss_dssp --CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS-CCE---ESCGGGTTTHHHHHHTSGGGCCCCEEE
T ss_pred cccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc-cee---eccccccccccccccccccccceEEEE
Confidence 000112356678999999999999999999 9999999986 4321 111 111110 123789
Q ss_pred eCCCcEEEEeCC-CceEEEEccCCceEeeec---------------------------------ccccceEEEEEcCCCC
Q 013545 359 TQDPAVVFVPCM-TAVKAFDIWSGKTCLTFR---------------------------------GHYEYVNCCCFSSQDQ 404 (441)
Q Consensus 359 ~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~---------------------------------gh~~~v~~v~fspd~~ 404 (441)
++++..+++++. +.+++||+.+++.+. +. .+...|.+++|+|++.
T Consensus 351 s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 429 (447)
T 3dw8_B 351 NGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKEN 429 (447)
T ss_dssp CTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS
T ss_pred CCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCC
Confidence 999998888765 689999999887653 22 2345789999999999
Q ss_pred eEEEeecCCcEEEeCC
Q 013545 405 ELYTGGNDRQILVWCP 420 (441)
Q Consensus 405 ~l~s~s~D~~i~vW~~ 420 (441)
+||+++.|+ +.+|..
T Consensus 430 ~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 430 IIAVATTNN-LYIFQD 444 (447)
T ss_dssp EEEEECSSC-EEEEEC
T ss_pred EEEEEecce-eeeecc
Confidence 999998776 677754
No 76
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=7.9e-33 Score=268.96 Aligned_cols=291 Identities=18% Similarity=0.224 Sum_probs=225.7
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
.....++++|....++++++.||.|+|||+....... . ......+|...|.++.|+|.++.+|++|+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~--------~-----~~~~~~~h~~~V~~~~~~p~~~~~l~s~s 101 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD--------K-----NVPLVCGHTAPVLDIAWCPHNDNVIASGS 101 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC--------T-----TCCCBCCCSSCEEEEEECTTCTTEEEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC--------C-----CCceEecCCCCEEEEEeCCCCCCEEEEEe
Confidence 4455688886544456678999999999986432110 0 01224589999999999986788999999
Q ss_pred CCCcEEEEECCCC-------eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee--cCCCCCe
Q 013545 124 YDHYVKVWDTNCT-------RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--SGHRDGI 193 (441)
Q Consensus 124 ~D~~i~iWd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l--~~h~~~v 193 (441)
.|++|++||+.++ .++..+. +.+.+..+.+++.+ ..+|++++.|+.|++||+++++.+..+ .+|...|
T Consensus 102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA--QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB--TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC--CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 9999999999887 4455554 45678899999864 258999999999999999999999999 8999999
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
.+++|+|+++. |++++.|+.|++||++++.+...+.
T Consensus 180 ~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~------------------------------------------- 215 (402)
T 2aq5_A 180 YSVDWSRDGAL-ICTSCRDKRVRVIEPRKGTVVAEKD------------------------------------------- 215 (402)
T ss_dssp EEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEEEE-------------------------------------------
T ss_pred EEEEECCCCCE-EEEEecCCcEEEEeCCCCceeeeec-------------------------------------------
Confidence 99999999875 7899999999999998765443321
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccC-eEEEEEccCCCEEEEe---ecCCcEEEeeCCCCCceeeeeeeEEe-
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSA---GSDSRIRLWDVESGRNTLVNFETVRL- 348 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sg---s~D~~i~~wd~~~~~~~~~~~~~~~~- 348 (441)
.+|.+. +.+++|+|++.+|++| +.|++|++||+.+.+.... ....
T Consensus 216 ---------------------------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~---~~~~~ 265 (402)
T 2aq5_A 216 ---------------------------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS---LQELD 265 (402)
T ss_dssp ---------------------------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE---EEECC
T ss_pred ---------------------------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce---EEecc
Confidence 123333 7889999999999999 7999999999998654221 1111
Q ss_pred ccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCce-Eeeeccc--ccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545 349 QTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKT-CLTFRGH--YEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~-~~~l~gh--~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~ 423 (441)
.......+++++++..+++.+ .+.+++||+.+++. +..+..| ..+|.+++|+|++.++++ .|+.+++|++.++
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 234567789999999886543 47899999998874 5555554 589999999999999876 4669999999875
Q ss_pred CC
Q 013545 424 IS 425 (441)
Q Consensus 424 ~~ 425 (441)
..
T Consensus 344 ~~ 345 (402)
T 2aq5_A 344 KC 345 (402)
T ss_dssp EE
T ss_pred cE
Confidence 43
No 77
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-31 Score=255.44 Aligned_cols=249 Identities=18% Similarity=0.252 Sum_probs=193.7
Q ss_pred cccCcccceeEEEE-----eeCCCCEEEEEeCCCcEEEEECCCC-------eEEEEEe-cCCeeEEEeeccCCCCccEEE
Q 013545 98 HEHGHKYAISSAIW-----YPVDTGLFVTGSYDHYVKVWDTNCT-------RVVMNFK-MPGKVYRTAMSPLAASHMLIA 164 (441)
Q Consensus 98 ~~~~h~~~V~~~~~-----~~~~~~~l~sgs~D~~i~iWd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~la 164 (441)
.+.||+..|.++.+ ++.++.+|+||+.|++|++||+..+ .+...+. +...+.++.+++.. .+++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~---~~l~ 92 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN---CFAI 92 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST---TEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC---CEEE
Confidence 34689999999998 6658899999999999999998753 2333333 34568888888753 5899
Q ss_pred EEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccc
Q 013545 165 AGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLK 244 (441)
Q Consensus 165 s~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (441)
+|+.|+.|++||+++++.+..+.+|...|.+++|+|+++ .|++++.|++|++||++.. +....
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~-~~~~~--------------- 155 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGE-CKFSS--------------- 155 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSC-EEEEC---------------
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCC-ceeee---------------
Confidence 999999999999999999999999999999999999988 5789999999999998632 11100
Q ss_pred ccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC--------
Q 013545 245 RKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-------- 316 (441)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-------- 316 (441)
.....|...|.+++|+|++
T Consensus 156 -----------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~ 182 (343)
T 2xzm_R 156 -----------------------------------------------------AEKENHSDWVSCVRYSPIMKSANKVQP 182 (343)
T ss_dssp -----------------------------------------------------CTTTSCSSCEEEEEECCCCCSCSCCCS
T ss_pred -----------------------------------------------------ecccCCCceeeeeeeccccccccccCC
Confidence 0012466779999999987
Q ss_pred --CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCC-ceEeeeccccc
Q 013545 317 --MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSG-KTCLTFRGHYE 392 (441)
Q Consensus 317 --~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~-~~~~~l~gh~~ 392 (441)
.+|++++.|++|++||... + .......+......++++|++.++++++. +.+++||+.+. .....+ .|..
T Consensus 183 ~~~~l~s~~~d~~i~iwd~~~-~----~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~ 256 (343)
T 2xzm_R 183 FAPYFASVGWDGRLKVWNTNF-Q----IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGS 256 (343)
T ss_dssp SCCEEEEEETTSEEEEEETTT-E----EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSS
T ss_pred CCCEEEEEcCCCEEEEEcCCC-c----eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCC
Confidence 7899999999999999432 1 11233344556778899999999888765 68999999543 333444 3556
Q ss_pred ceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 393 YVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 393 ~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
.|.+++|+|++++|+ ++.|+.|++|++.+....
T Consensus 257 ~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 257 TINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKA 289 (343)
T ss_dssp CEEEEEECSSSCEEE-EEESSCEEEEESSSCCSC
T ss_pred cEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCC
Confidence 799999999998776 556889999999876543
No 78
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=8.1e-32 Score=264.37 Aligned_cols=275 Identities=19% Similarity=0.312 Sum_probs=207.9
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
..+|.+.|++++|+|.++++|++++.||.|+|||+.+....... ......+ ....+|...|.++.|++....+
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~--~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~ 196 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP--SGECQPD-----LRLRGHQKEGYGLSWNPNLNGY 196 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT--TCCCCCS-----EEEECCSSCCCCEEECTTSTTE
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc--cccCCCc-----EEecCCCCCeEEEEeCCCCCCe
Confidence 45899999999999865779999999999999999753211000 0000111 1224799999999999854449
Q ss_pred EEEEeCCCcEEEEECCCCeE-------EEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC---ceeeeec
Q 013545 119 FVTGSYDHYVKVWDTNCTRV-------VMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG---AISQTLS 187 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~---~~~~~l~ 187 (441)
|++|+.|++|++||+..+.. ...+ .+.+.+.++.+++.. ..+|++++.|+.|++||++++ +.+..+.
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~--~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~ 274 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH--ESLFGSVADDQKLMIWDTRNNNTSKPSHTVD 274 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC--TTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC--CCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence 99999999999999987321 2223 245668888988853 458999999999999999987 5677888
Q ss_pred CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545 188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA 266 (441)
Q Consensus 188 ~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (441)
.|...|.+++|+|+++++|++|+.||+|++||++..+ ++.
T Consensus 275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~--------------------------------------- 315 (430)
T 2xyi_A 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH--------------------------------------- 315 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE---------------------------------------
T ss_pred cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE---------------------------------------
Confidence 9999999999999998888999999999999998521 110
Q ss_pred CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeeeeee
Q 013545 267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFET 345 (441)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~~~~ 345 (441)
....|.+.|++|+|+|++. +|++++.|++|++||+......... .
T Consensus 316 --------------------------------~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~- 361 (430)
T 2xyi_A 316 --------------------------------SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST-E- 361 (430)
T ss_dssp --------------------------------EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH-H-
T ss_pred --------------------------------EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc-c-
Confidence 1235778899999999995 6999999999999999863211000 0
Q ss_pred EEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCC-eEEEeecCCcEEEeCCCCCC
Q 013545 346 VRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~-~l~s~s~D~~i~vW~~~~~~ 424 (441)
. ... ...+++..+.+|...|.+++|+|+++ +|+|++.|+.|+||++....
T Consensus 362 -~-~~~---------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 362 -D-AED---------------------------GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp -H-HHH---------------------------CCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred -c-ccc---------------------------CCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 0 000 01234456688999999999999999 89999999999999997654
No 79
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.3e-31 Score=270.95 Aligned_cols=295 Identities=17% Similarity=0.243 Sum_probs=225.1
Q ss_pred ceeeecCCCCc-eeEEEccCC-CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEe
Q 013545 35 YKEIVSPHKGS-INSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWY 112 (441)
Q Consensus 35 ~~~~~~~H~~~-V~~l~~s~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~ 112 (441)
....+.+|.+. |++++|+|. ++++|++|+.||+|+|||+.++.... .. .. .. .....+|...|.++.|+
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~-~~-~~----~~~~~~~~~~v~~~~~s 125 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN---SV-EV-NV----KSEFQVLAGPISDISWD 125 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT---EE-EE-EE----EEEEECCSSCEEEEEEC
T ss_pred cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc---cc-cc-cc----cchhhcccccEEEEEEe
Confidence 34557899999 999999961 47899999999999999996441100 00 00 00 11234688899999998
Q ss_pred eCCCCEEEEEeCC----CcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545 113 PVDTGLFVTGSYD----HYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS 187 (441)
Q Consensus 113 ~~~~~~l~sgs~D----~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~ 187 (441)
| ++.+|++++.| +.|++|| .++.+..+. +.+.+..+.++++. ..++++++.|+.|++||+++++.+..+.
T Consensus 126 ~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~v~vwd~~~~~~~~~~~ 200 (615)
T 1pgu_A 126 F-EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR--PMRSMTVGDDGSVVFYQGPPFKFSASDR 200 (615)
T ss_dssp T-TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS--SCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred C-CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC--CcEEEEEeCCCcEEEEeCCCcceeeeec
Confidence 7 78899999998 6899998 455555554 34668888888864 2479999999999999999999999999
Q ss_pred CCCC---CeEEEEEecC-CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545 188 GHRD---GIMTVEWSTS-SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK 263 (441)
Q Consensus 188 ~h~~---~v~~v~fsp~-~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (441)
+|.. .|.+++|+|+ ++ +|++++.|+.|++||++++++...+..
T Consensus 201 ~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~-------------------------------- 247 (615)
T 1pgu_A 201 THHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGEFLKYIED-------------------------------- 247 (615)
T ss_dssp SSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCCEEEECCB--------------------------------
T ss_pred ccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCEeEEecc--------------------------------
Confidence 9999 9999999999 77 578999999999999987654332200
Q ss_pred ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee
Q 013545 264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF 343 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~ 343 (441)
....|...|.+++|+ ++.+|++++.|++|++||+.+++...
T Consensus 248 -----------------------------------~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~--- 288 (615)
T 1pgu_A 248 -----------------------------------DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ--- 288 (615)
T ss_dssp -----------------------------------TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEE---
T ss_pred -----------------------------------cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEE---
Confidence 001467789999999 99999999999999999999765321
Q ss_pred eeEEec----cCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545 344 ETVRLQ----TSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418 (441)
Q Consensus 344 ~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW 418 (441)
..... ......+.+. ++..+++++ .+.+++||+.+++.+..+.+|.++|.+++| |+ |++++.|+.|++|
T Consensus 289 -~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w 362 (615)
T 1pgu_A 289 -KWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEW 362 (615)
T ss_dssp -EEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEET
T ss_pred -EEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEE
Confidence 11211 1223344444 666666654 478999999999999999999999999999 87 7778888888888
Q ss_pred CCC
Q 013545 419 CPS 421 (441)
Q Consensus 419 ~~~ 421 (441)
++.
T Consensus 363 ~~~ 365 (615)
T 1pgu_A 363 SSS 365 (615)
T ss_dssp TTT
T ss_pred Ech
Confidence 764
No 80
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-32 Score=266.95 Aligned_cols=268 Identities=15% Similarity=0.124 Sum_probs=205.9
Q ss_pred CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 121 (441)
-...|.+++|+| ||+++||+|.|++|+ |.+.+. ...+|...|.++.|+| +|
T Consensus 14 ~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~--------------------~l~gh~~~v~~V~FsP-dg----- 64 (588)
T 2j04_A 14 FEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAK--------------------DINCNSKNLFHVKEFP-LE----- 64 (588)
T ss_dssp CSSSSCCEEECT-TSCEEEECSSSEEEE--EECCCS--------------------CCSSBGGGTEEEEEEC-CC-----
T ss_pred hhccEEEEEECC-CCCEEEEEcCCceee--cccccc--------------------eecCCCccEEEEEECC-CC-----
Confidence 358899999997 688999999999999 754332 1248999999999998 55
Q ss_pred EeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC-----CeEEE
Q 013545 122 GSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD-----GIMTV 196 (441)
Q Consensus 122 gs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~-----~v~~v 196 (441)
.|+++++|+..... +..+.....+..++|+|++ .+||+++.|+.|++||.++ ++..+. |.. .|.++
T Consensus 65 --~~~~~~~~~~~~~~-~~~~~~~~~V~~vawSPdG---~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sv 135 (588)
T 2j04_A 65 --FENKLDFELAQQNG-LLNSQPVCYPRVCKPSPID---DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCF 135 (588)
T ss_dssp --CCCTTTTSCCCSSC-SSTTSCSCCEEEEEECSSS---SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEE
T ss_pred --CcceEEEEeCCCce-EeecCCCCcEEEEEECCCC---CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEE
Confidence 57777777654322 2222335679999999965 4799999999999999655 666677 665 49999
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCCCce-------eeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGC-------FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN 269 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (441)
+|||+|+. |++|+.||+|++||+..++. +..++.
T Consensus 136 afSPDG~~-LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~-------------------------------------- 176 (588)
T 2j04_A 136 EWNPIESS-IVVGNEDGELQFFSIRKNSENTPEFYFESSIRL-------------------------------------- 176 (588)
T ss_dssp EECSSSSC-EEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC--------------------------------------
T ss_pred EEcCCCCE-EEEEcCCCEEEEEECCCCccccccceeeeeeec--------------------------------------
Confidence 99999985 79999999999999876421 111100
Q ss_pred CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE-Ee
Q 013545 270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV-RL 348 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~-~~ 348 (441)
...+|.++|.+++|+||| +++++.|++|++||+..+.... ....+ ..
T Consensus 177 -----------------------------~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~-~~~tL~~~ 224 (588)
T 2j04_A 177 -----------------------------SDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP-VSRMIQNA 224 (588)
T ss_dssp -----------------------------SCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC-CEEEEECC
T ss_pred -----------------------------ccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc-ceeeeccc
Confidence 013577899999999999 8889999999999998765210 01112 12
Q ss_pred ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEE--cCCCCeEEEeecCCcEEEeCCC
Q 013545 349 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF--SSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f--spd~~~l~s~s~D~~i~vW~~~ 421 (441)
+......++++ +..+++++.+++++||+.+++......||...|++++| +||++.|+++++||+ |+|..+
T Consensus 225 h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 225 SRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred ccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 34556777887 57888888889999999988875555589999999999 999999999999999 999875
No 81
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=281.58 Aligned_cols=262 Identities=19% Similarity=0.323 Sum_probs=202.5
Q ss_pred eeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC-C
Q 013545 37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-D 115 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~ 115 (441)
.++.+|.+.|++++|+| ++++|++|+.||+|+|||+..... ..+ ....+|...|.++.|++. +
T Consensus 3 ~~l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~----------~~~-----~~l~~h~~~V~~l~~s~~~~ 66 (753)
T 3jro_A 3 VIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETH----------KLI-----DTLTGHEGPVWRVDWAHPKF 66 (753)
T ss_dssp -----CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEE----------EEE-----EEECCCSSCEEEEEECCTTS
T ss_pred eecccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCC----------ccc-----eeccCCcCceEEEEecCCCC
Confidence 45679999999999997 577899999999999999864321 001 123589999999999863 2
Q ss_pred CCEEEEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc--eeeeecCCC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTLSGHR 190 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~--~~~~l~~h~ 190 (441)
+.+|++|+.|++|++||+.++. .+..+. +.+.+.++.++|... ..++++|+.|+.|++||+.++. ....+.+|.
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-CSEEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCC-CCEEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence 7899999999999999999886 344443 456788999988621 3479999999999999998873 345678999
Q ss_pred CCeEEEEEecC-------------CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcC
Q 013545 191 DGIMTVEWSTS-------------SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVK 257 (441)
Q Consensus 191 ~~v~~v~fsp~-------------~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (441)
..|.++.|+|. ++ +|++|+.||+|++||++++......
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~---------------------------- 196 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVL---------------------------- 196 (753)
T ss_dssp SCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEE----------------------------
T ss_pred CceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCccccee----------------------------
Confidence 99999999994 55 5789999999999999764211000
Q ss_pred CCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC---CCEEEEeecCCcEEEeeCC
Q 013545 258 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED---GMYLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d---g~~l~sgs~D~~i~~wd~~ 334 (441)
.....+|.++|++++|+|+ +.+|++|+.|++|++||+.
T Consensus 197 ---------------------------------------~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 197 ---------------------------------------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ---------------------------------------EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred ---------------------------------------eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 0012467889999999999 8999999999999999998
Q ss_pred CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc
Q 013545 335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ 414 (441)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~ 414 (441)
++..... .......+|...|++++|+|+|++|++|+.|+.
T Consensus 238 ~~~~~~~----------------------------------------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~ 277 (753)
T 3jro_A 238 NEQGPWK----------------------------------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (753)
T ss_dssp SSSSCCB----------------------------------------CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred CCCCcce----------------------------------------eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence 7542110 011223458889999999999999999999999
Q ss_pred EEEeCCCCC
Q 013545 415 ILVWCPSRH 423 (441)
Q Consensus 415 i~vW~~~~~ 423 (441)
|++|++..+
T Consensus 278 I~vwd~~~~ 286 (753)
T 3jro_A 278 VTLWKENLE 286 (753)
T ss_dssp EECCBCCSS
T ss_pred EEEEecCCC
Confidence 999999854
No 82
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=3.8e-31 Score=256.46 Aligned_cols=261 Identities=10% Similarity=0.041 Sum_probs=174.1
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe------cCCeeEEEeeccCC-----CCccEEEEEeCCCcEEEEE
Q 013545 108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK------MPGKVYRTAMSPLA-----ASHMLIAAGTEDVQVRLCD 176 (441)
Q Consensus 108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~------~~~~~~~~~~~~~~-----~~~~~las~s~d~~I~vwd 176 (441)
.+.+++.++.++|+|+.|++|||||+.++....... +.+.+.+++|+|.. .+..+||+|+.|++|+|||
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 344555567789999999999999999887654322 34668999998732 2456899999999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256 (441)
Q Consensus 177 l~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (441)
++++..+..+.+|...|.+++|+|++..+|++++.|++|++||++++..............
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~------------------- 233 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN------------------- 233 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC-------------------
T ss_pred CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc-------------------
Confidence 9999888888899999999999999876789999999999999987654322211000000
Q ss_pred CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc-cCCCEEEEeecCCcEEEeeCCC
Q 013545 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT-EDGMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~sgs~D~~i~~wd~~~ 335 (441)
.......... ........+|...|.++.|+ ||++.|++++.|+++++||+.+
T Consensus 234 -----------~~~~s~~~~~----------------~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~ 286 (393)
T 4gq1_A 234 -----------PWLLTLNTLP----------------LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA 286 (393)
T ss_dssp -----------CCSEEEESGG----------------GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--
T ss_pred -----------ceEEeccccc----------------ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc
Confidence 0000000000 00001124677889999987 8999999999999999999987
Q ss_pred CCceeeee-e-----eE-------Ee-ccCcceEEEeeC--CCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEE
Q 013545 336 GRNTLVNF-E-----TV-------RL-QTSKPIQLATTQ--DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCC 398 (441)
Q Consensus 336 ~~~~~~~~-~-----~~-------~~-~~~~~~~~~~~~--~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~ 398 (441)
++...... + .. .. .........+.+ ++.++++++. +.+++||+.+++....+.+|..+|.+|+
T Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sva 366 (393)
T 4gq1_A 287 NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFC 366 (393)
T ss_dssp -----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEE
Confidence 54211100 0 00 00 001111222222 3334445543 6899999999999999999999999999
Q ss_pred EcCCCCeEEEeecCCc
Q 013545 399 FSSQDQELYTGGNDRQ 414 (441)
Q Consensus 399 fspd~~~l~s~s~D~~ 414 (441)
|||||++||++++|+.
T Consensus 367 fspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 367 WHQDGSHLAIATEGSV 382 (393)
T ss_dssp ECTTSSEEEEEESSEE
T ss_pred EcCCCCEEEEEeCCCe
Confidence 9999999999998875
No 83
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-30 Score=272.86 Aligned_cols=289 Identities=15% Similarity=0.239 Sum_probs=223.4
Q ss_pred eeeecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 36 ~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
...+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++... ....+|...|.++.|+| +
T Consensus 48 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~-----------------~~~~~~~~~v~~~~~s~-~ 108 (814)
T 3mkq_A 48 VRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKV-----------------VDFEAHPDYIRSIAVHP-T 108 (814)
T ss_dssp EEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEE-----------------EEEECCSSCEEEEEECS-S
T ss_pred EEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEE-----------------EEEecCCCCEEEEEEeC-C
Confidence 345668999999999997 5789999999999999999865421 11237899999999987 7
Q ss_pred CCEEEEEeCCCcEEEEECCCC-eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC-CC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCT-RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-DG 192 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~-~~ 192 (441)
+.+|++++.|++|++||+.++ .....+. +.+.+.++.++|. +..++++++.|+.|++||+.++.....+..|. ..
T Consensus 109 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 186 (814)
T 3mkq_A 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186 (814)
T ss_dssp SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT--EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCC
Confidence 889999999999999999887 5555554 4567888888873 23589999999999999999988877776554 88
Q ss_pred eEEEEEec--CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545 193 IMTVEWST--SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG 270 (441)
Q Consensus 193 v~~v~fsp--~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (441)
+.+++|+| +++ +|++++.||.|++||++++.+...+
T Consensus 187 v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~----------------------------------------- 224 (814)
T 3mkq_A 187 VNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATL----------------------------------------- 224 (814)
T ss_dssp CCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEE-----------------------------------------
T ss_pred EEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEE-----------------------------------------
Confidence 99999999 776 5789999999999999876443322
Q ss_pred ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc
Q 013545 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 350 (441)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~ 350 (441)
.+|.+.|.+++|+|++.+|++++.|++|++||+.+++.. .......
T Consensus 225 ------------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~----~~~~~~~ 270 (814)
T 3mkq_A 225 ------------------------------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE----KTLNVGL 270 (814)
T ss_dssp ------------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE----EEECCSS
T ss_pred ------------------------------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE----EEeecCC
Confidence 246678999999999999999999999999999987532 2222334
Q ss_pred CcceEEEeeCCCc--EEEEeCCCceEEEEccCCceE-------------------------------------------e
Q 013545 351 SKPIQLATTQDPA--VVFVPCMTAVKAFDIWSGKTC-------------------------------------------L 385 (441)
Q Consensus 351 ~~~~~~~~~~~~~--~~~~~~~~~~~~wd~~~~~~~-------------------------------------------~ 385 (441)
.....+++++++. +++++....+.+|++..+... .
T Consensus 271 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (814)
T 3mkq_A 271 ERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTK 350 (814)
T ss_dssp SSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCE
T ss_pred CcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeee
Confidence 4566777788876 455566677777876442211 1
Q ss_pred eecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545 386 TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 386 ~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~ 422 (441)
.+..|...+.+++|+|||++|++++ |+.+.+|+...
T Consensus 351 ~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 351 ELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp EECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred cCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 2234555678889999888888887 88888888654
No 84
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.3e-30 Score=252.91 Aligned_cols=297 Identities=12% Similarity=0.076 Sum_probs=215.4
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccce---------------------------------
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRS--------------------------------- 90 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~--------------------------------- 90 (441)
.++++++|++ ++++|+++ .++.|++||+.+++.............
T Consensus 5 ~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 5689999997 56766555 678999999987761100000000000
Q ss_pred -------eEEeecccccCcccceeEEEEeeCCCCEE-EEEeCCCcEEEEECC--CCeEEEEE---ecCCeeEEEeeccCC
Q 013545 91 -------VFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHYVKVWDTN--CTRVVMNF---KMPGKVYRTAMSPLA 157 (441)
Q Consensus 91 -------~~~~~~~~~~~h~~~V~~~~~~~~~~~~l-~sgs~D~~i~iWd~~--~~~~~~~~---~~~~~~~~~~~~~~~ 157 (441)
..........+|...|.++.|+| ++.+| ++|+.|++|++||+. ++..+..+ .+...+.++.++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 00000011235777899999987 67775 899999999999998 77777666 345678889998854
Q ss_pred CCccEEEEEeCCCcEEEEECCCCceee----eecCCCCCeEEEEEecC---CCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545 158 ASHMLIAAGTEDVQVRLCDIASGAISQ----TLSGHRDGIMTVEWSTS---SEWILVTGGCDGAIRFWDIRRAGCFRVLD 230 (441)
Q Consensus 158 ~~~~~las~s~d~~I~vwdl~~~~~~~----~l~~h~~~v~~v~fsp~---~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~ 230 (441)
.+|++|+.++.|++|++.+++... .+.+|...|.+++|+|+ ++ +|++|+.|++|++||++++.++..+
T Consensus 162 ---~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~- 236 (450)
T 2vdu_B 162 ---TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFIVDKW- 236 (450)
T ss_dssp ---SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTCEEEE-
T ss_pred ---CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCceeeee-
Confidence 478999999999999999887554 78899999999999999 76 5789999999999999865433221
Q ss_pred cCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEE
Q 013545 231 QSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGL 310 (441)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 310 (441)
..+|.+.|+++
T Consensus 237 ---------------------------------------------------------------------~~~h~~~v~~~ 247 (450)
T 2vdu_B 237 ---------------------------------------------------------------------LFGHKHFVSSI 247 (450)
T ss_dssp ---------------------------------------------------------------------CCCCSSCEEEE
T ss_pred ---------------------------------------------------------------------ecCCCCceEEE
Confidence 12577889999
Q ss_pred EEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEE----------------------eccCcceEEEeeCCCcEEEEe
Q 013545 311 KVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR----------------------LQTSKPIQLATTQDPAVVFVP 368 (441)
Q Consensus 311 ~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 368 (441)
+|+ ++.+|++++.|++|++||+.+++.... +.... ........+++.+++..++++
T Consensus 248 ~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 325 (450)
T 2vdu_B 248 CCG-KDYLLLSAGGDDKIFAWDWKTGKNLST-FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF 325 (450)
T ss_dssp EEC-STTEEEEEESSSEEEEEETTTCCEEEE-EECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred EEC-CCCEEEEEeCCCeEEEEECCCCcEeee-ecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence 999 999999999999999999998764221 11000 011234467888999888887
Q ss_pred C--CCceEEEEc--cCC---ceEeeecccccceEEEEEcCCCCeEEEe-ec------CCcEEEeCCC
Q 013545 369 C--MTAVKAFDI--WSG---KTCLTFRGHYEYVNCCCFSSQDQELYTG-GN------DRQILVWCPS 421 (441)
Q Consensus 369 ~--~~~~~~wd~--~~~---~~~~~l~gh~~~v~~v~fspd~~~l~s~-s~------D~~i~vW~~~ 421 (441)
+ ...+++|++ .++ +.+..+.+| +.|.+++|+|++ .+++. +. +..|++|...
T Consensus 326 ~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 326 VEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred ECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 5 468999999 555 667788888 889999999964 55543 43 5568999654
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.98 E-value=1.4e-30 Score=242.69 Aligned_cols=211 Identities=18% Similarity=0.296 Sum_probs=169.3
Q ss_pred cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC--eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT--RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwd 176 (441)
.+|...|.+++|++ ++.+||||+.|++|++||+..+ +++..+. +.+.+.++.|++.. ...+|++|+.|+.|++||
T Consensus 6 ~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 6 NAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVMIWK 83 (297)
T ss_dssp CSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTTEEEEEE
T ss_pred cCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-cCCEEEEEcCCCEEEEEE
Confidence 48999999999986 7999999999999999999743 4555554 45678889887532 135899999999999999
Q ss_pred CCCCc--eeeeecCCCCCeEEEEEecC--CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545 177 IASGA--ISQTLSGHRDGIMTVEWSTS--SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ 252 (441)
Q Consensus 177 l~~~~--~~~~l~~h~~~v~~v~fsp~--~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (441)
+++++ .+..+.+|...|.+++|+|+ +. +|++++.|++|++||++......
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~------------------------- 137 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTS------------------------- 137 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBC-------------------------
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCcee-------------------------
Confidence 99874 55678899999999999997 55 68999999999999987531100
Q ss_pred cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-------------CCEE
Q 013545 253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-------------GMYL 319 (441)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-------------g~~l 319 (441)
.....+|...|.+++|+|+ +++|
T Consensus 138 --------------------------------------------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l 173 (297)
T 2pm7_B 138 --------------------------------------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173 (297)
T ss_dssp --------------------------------------------CEEEECCSSCEEEEEECCCC------------CCEE
T ss_pred --------------------------------------------eeeeecccCccceEeecCCcccccccCCCCCCcceE
Confidence 0012457788999999997 5799
Q ss_pred EEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEE
Q 013545 320 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF 399 (441)
Q Consensus 320 ~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f 399 (441)
++|+.|++|++||+.+++... ....++.+|...|.+|+|
T Consensus 174 ~sgs~D~~v~lwd~~~~~~~~-----------------------------------------~~~~~l~~H~~~V~~v~~ 212 (297)
T 2pm7_B 174 VTGGADNLVKIWKYNSDAQTY-----------------------------------------VLESTLEGHSDWVRDVAW 212 (297)
T ss_dssp EEEETTSCEEEEEEETTTTEE-----------------------------------------EEEEEECCCSSCEEEEEE
T ss_pred EEEcCCCcEEEEEEcCCCceE-----------------------------------------EEEEEecCCCCceEEEEE
Confidence 999999999999987644211 122456789999999999
Q ss_pred cCCC---CeEEEeecCCcEEEeCCCCC
Q 013545 400 SSQD---QELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 400 spd~---~~l~s~s~D~~i~vW~~~~~ 423 (441)
+|++ ++|+||+.|++|+||++...
T Consensus 213 sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 213 SPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp CCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred CCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 9995 89999999999999998764
No 86
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=9.5e-31 Score=257.22 Aligned_cols=258 Identities=15% Similarity=0.195 Sum_probs=197.6
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEEecC-------------CeeEEEeeccC
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-----------VVMNFKMP-------------GKVYRTAMSPL 156 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~-----------~~~~~~~~-------------~~~~~~~~~~~ 156 (441)
.|.+.|.++.|+| ++.+||+|+.|++|++||+.++. +...+..+ +.+.++.+++.
T Consensus 26 ~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 5778999999987 78999999999999999998766 34455433 56888899886
Q ss_pred CCCccEEEEEeCCCcEEEEECCCCcee---------------------------------------ee-ecCCCCCeEEE
Q 013545 157 AASHMLIAAGTEDVQVRLCDIASGAIS---------------------------------------QT-LSGHRDGIMTV 196 (441)
Q Consensus 157 ~~~~~~las~s~d~~I~vwdl~~~~~~---------------------------------------~~-l~~h~~~v~~v 196 (441)
.. ..+|++++.|+.|++||+.++... +. +.+|...|.++
T Consensus 105 ~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 105 KN-AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CS-SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CC-cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 42 147888899999999999764431 12 46899999999
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
+|+|+++ +|++| .|++|++||++. ..++..+...
T Consensus 184 ~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~------------------------------------------- 218 (447)
T 3dw8_B 184 SINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIK------------------------------------------- 218 (447)
T ss_dssp EECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECC-------------------------------------------
T ss_pred EEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecc-------------------------------------------
Confidence 9999987 56787 799999999983 3333222100
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC---
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS--- 351 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~--- 351 (441)
.....+|...|++++|+|++ .+|++|+.|++|++||+.+++...........+..
T Consensus 219 ---------------------~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 277 (447)
T 3dw8_B 219 ---------------------PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN 277 (447)
T ss_dssp ---------------------CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----
T ss_pred ---------------------cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccc
Confidence 00124677889999999998 99999999999999999987631100111111222
Q ss_pred ---------cceEEEeeCCCcEEEEeCCCceEEEEccC-CceEeeecccccc---------------eEEEEEcCCCCeE
Q 013545 352 ---------KPIQLATTQDPAVVFVPCMTAVKAFDIWS-GKTCLTFRGHYEY---------------VNCCCFSSQDQEL 406 (441)
Q Consensus 352 ---------~~~~~~~~~~~~~~~~~~~~~~~~wd~~~-~~~~~~l~gh~~~---------------v~~v~fspd~~~l 406 (441)
....+++++++.++++++.+.+++||+.+ ++.+.++.+|... +..++|+|++++|
T Consensus 278 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l 357 (447)
T 3dw8_B 278 RSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV 357 (447)
T ss_dssp CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE
T ss_pred cccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEE
Confidence 56678999999998887778999999987 8889999999753 2349999999999
Q ss_pred EEeecCCcEEEeCCCCCCCC
Q 013545 407 YTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 407 ~s~s~D~~i~vW~~~~~~~~ 426 (441)
++|+.|+.|++|++.+++..
T Consensus 358 ~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 358 MTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp EEECSTTEEEEEETTTCCEE
T ss_pred EEeccCCEEEEEEcCCCcce
Confidence 99999999999999987653
No 87
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.98 E-value=4.4e-30 Score=267.24 Aligned_cols=249 Identities=17% Similarity=0.289 Sum_probs=201.8
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC-----eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcE
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT-----RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQV 172 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I 172 (441)
..+|++.|.++.+++.++++|+|||.|++|++||+... .....+. +.+.+.++.+++++ .+|++|+.|+.|
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g---~~l~sgs~Dg~v 454 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG---QFALSGSWDGEL 454 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS---SEEEEEETTSEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC---CEEEEEeCCCcE
Confidence 45899999999998867789999999999999998753 2333333 45678889998854 489999999999
Q ss_pred EEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545 173 RLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ 252 (441)
Q Consensus 173 ~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (441)
++||+.++.....+.+|...|.+++|+|+++. |+||+.|++|++||+.........
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~----------------------- 510 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECKYTIS----------------------- 510 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEEC-----------------------
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCCCCE-EEEEeCCCEEEEEECCCCcceeec-----------------------
Confidence 99999999999999999999999999999985 789999999999997542111100
Q ss_pred cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC--CEEEEeecCCcEEE
Q 013545 253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG--MYLLSAGSDSRIRL 330 (441)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~D~~i~~ 330 (441)
....+|...|.+++|+|++ ..|++|+.|++|++
T Consensus 511 ---------------------------------------------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~v 545 (694)
T 3dm0_A 511 ---------------------------------------------EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545 (694)
T ss_dssp ---------------------------------------------SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred ---------------------------------------------cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEE
Confidence 0013577889999999987 58999999999999
Q ss_pred eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe
Q 013545 331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG 409 (441)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~ 409 (441)
||+.+++.. .....+......+++++++..+++++. +.+++||+.+++.+..+..| ..|.+++|+|++.+|+++
T Consensus 546 wd~~~~~~~----~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~ 620 (694)
T 3dm0_A 546 WNLSNCKLR----STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAA 620 (694)
T ss_dssp EETTTCCEE----EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEECSSSSEEEEE
T ss_pred EECCCCcEE----EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEEEcCCCcEEEEE
Confidence 999876532 223334556678899999999888765 68999999999998888754 679999999998888766
Q ss_pred ecCCcEEEeCCCCCCC
Q 013545 410 GNDRQILVWCPSRHIS 425 (441)
Q Consensus 410 s~D~~i~vW~~~~~~~ 425 (441)
+ |+.|+||++.++..
T Consensus 621 ~-~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 621 T-EHGIKIWDLESKSI 635 (694)
T ss_dssp E-TTEEEEEETTTTEE
T ss_pred c-CCCEEEEECCCCCC
Confidence 5 66799999987654
No 88
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=2.9e-30 Score=246.78 Aligned_cols=295 Identities=12% Similarity=0.115 Sum_probs=203.2
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
..+|.+.|++++|+| ++++|++|+.|+ ++|||+.+.... .. .+...+..+.+.+ +++.
T Consensus 15 ~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~------------~~-------~~~~~~~~~~~~~-~~~~ 72 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHI------------MS-------QEMRHLSKVRMLH-RTNY 72 (355)
T ss_dssp ----CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEE------------EE-------EECSCCCEEEECT-TSSE
T ss_pred cccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCccee------------ee-------eecCCeEEEEEcC-CCCE
Confidence 368999999999996 578999988775 789998654311 10 0111355566665 3445
Q ss_pred E-EEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC-ceeeeecCCCCCeEEE
Q 013545 119 F-VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTV 196 (441)
Q Consensus 119 l-~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~-~~~~~l~~h~~~v~~v 196 (441)
+ ++++.|++|++||+.+++++..+.+...+..+.+++. .++++ .|+.|++||+.++ +.+..+.. ....+
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~ 143 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE-----FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVC 143 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSS-----EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEE
T ss_pred EEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCC-----EEEEE-EcCEEEEEECCCCceeeEEecc---CCceE
Confidence 5 6788899999999999999999888888888888753 23333 3789999999998 77766665 44556
Q ss_pred EEecCCCcEEEE-eecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 197 EWSTSSEWILVT-GGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 197 ~fsp~~~~~l~s-~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
++++ ..++++ |+.||.|++||++++......+...
T Consensus 144 ~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~------------------------------------------ 179 (355)
T 3vu4_A 144 EFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV------------------------------------------ 179 (355)
T ss_dssp EEET--TEEEEEESSCTTCEEEEECCC-----------------------------------------------------
T ss_pred EEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccc------------------------------------------
Confidence 6777 344333 7899999999998653211100000
Q ss_pred cccccCCCCcccccCCCcccc-cccceeeccCeEEEEEccCCCEEEEeecCCc-EEEeeCCCCCceeeeeeeEE-e-ccC
Q 013545 276 VGRIPAKGSVRQRLHPGMLSS-QDRATAHYGAVTGLKVTEDGMYLLSAGSDSR-IRLWDVESGRNTLVNFETVR-L-QTS 351 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~-i~~wd~~~~~~~~~~~~~~~-~-~~~ 351 (441)
....... .....+|.++|++|+|+|+|++|+||+.|++ |++||+.+++.. ..+. . +..
T Consensus 180 --------------~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~----~~~~~g~h~~ 241 (355)
T 3vu4_A 180 --------------QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV----REFRRGLDRA 241 (355)
T ss_dssp ---------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE----EEEECTTCCS
T ss_pred --------------cccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE----EEEEcCCCCC
Confidence 0000000 1124578999999999999999999999999 999999987642 2222 1 345
Q ss_pred cceEEEeeCCCcEEEEeCC-CceEEEEccCCceE--eeec---------------------ccccceEEEEEcCCCCeEE
Q 013545 352 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTC--LTFR---------------------GHYEYVNCCCFSSQDQELY 407 (441)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~--~~l~---------------------gh~~~v~~v~fspd~~~l~ 407 (441)
....++++|++..+++++. ..+++||+.++... ..+. ++..+...++|+|||++|+
T Consensus 242 ~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~ 321 (355)
T 3vu4_A 242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVV 321 (355)
T ss_dssp CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEE
Confidence 6678999999999888765 68999999765321 1111 1122347799999999999
Q ss_pred EeecCCcEEEeCCCCCCCC
Q 013545 408 TGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 408 s~s~D~~i~vW~~~~~~~~ 426 (441)
+++.|+.+++|++..+...
T Consensus 322 ~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 322 VWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp EETTTTEEEEEEEEEETTT
T ss_pred EEeCCCeEEEEEEEcCCCC
Confidence 9999999999988765433
No 89
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.98 E-value=5.5e-30 Score=247.79 Aligned_cols=265 Identities=13% Similarity=0.157 Sum_probs=205.2
Q ss_pred cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe------EEEEEe-cCCeeEEEeeccC----CCCccEEEEE
Q 013545 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR------VVMNFK-MPGKVYRTAMSPL----AASHMLIAAG 166 (441)
Q Consensus 98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~------~~~~~~-~~~~~~~~~~~~~----~~~~~~las~ 166 (441)
...+|...|.++.|++ ++|++|+.|++|++||+.++. .+..+. +...+.++.+++. +....+|+++
T Consensus 11 ~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp ESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 4568999999999976 699999999999999999887 454444 5567889999885 3111589999
Q ss_pred eCCCcEEEEECCCCce-----eeeecCC-----CCCeEEEEEe----cCCCcEEEEeecCCcEEEEEcCC------Ccee
Q 013545 167 TEDVQVRLCDIASGAI-----SQTLSGH-----RDGIMTVEWS----TSSEWILVTGGCDGAIRFWDIRR------AGCF 226 (441)
Q Consensus 167 s~d~~I~vwdl~~~~~-----~~~l~~h-----~~~v~~v~fs----p~~~~~l~s~s~Dg~I~iWD~~~------~~~~ 226 (441)
+.|+.|++||+++++. ...+.+| ...|.+++|+ |+++.+|++++.||.|++||++. +.++
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 9999999999999887 8888888 5999999999 99874278999999999999875 2111
Q ss_pred eEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccC
Q 013545 227 RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA 306 (441)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 306 (441)
. ..+...+ ... ......|...
T Consensus 168 ~---------------------------------------------~~~~~~~------~~~--------~~~~~~~~~~ 188 (397)
T 1sq9_A 168 N---------------------------------------------WSPTLEL------QGT--------VESPMTPSQF 188 (397)
T ss_dssp C---------------------------------------------CCCEEEE------EEE--------ECCSSSSCCC
T ss_pred e---------------------------------------------ccCccee------eee--------eccccCCCCC
Confidence 1 0000000 000 0001236678
Q ss_pred eEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe---c---cCcceEEEeeCCCcEEEEeCC----CceEEE
Q 013545 307 VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL---Q---TSKPIQLATTQDPAVVFVPCM----TAVKAF 376 (441)
Q Consensus 307 v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~----~~~~~w 376 (441)
|.+++|+|++ +|++++.|+.|++||+.+++.. ..... + ......+++++++..+++++. +.+++|
T Consensus 189 i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 189 ATSVDISERG-LIATGFNNGTVQISELSTLRPL----YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp CCEEEECTTS-EEEEECTTSEEEEEETTTTEEE----EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred ceEEEECCCc-eEEEEeCCCcEEEEECCCCcee----EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence 9999999999 9999999999999999876532 22232 3 455677889999998888765 589999
Q ss_pred EccCCceEeeecc-------------cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545 377 DIWSGKTCLTFRG-------------HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 377 d~~~~~~~~~l~g-------------h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~ 429 (441)
|+.+++.+..+.+ |...|.+++|+|++++|++++.|+.|++|++.++......
T Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 329 (397)
T 1sq9_A 264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329 (397)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEE
Confidence 9999999999999 9999999999999999999999999999999877644333
No 90
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=1.5e-30 Score=248.24 Aligned_cols=256 Identities=15% Similarity=0.196 Sum_probs=201.1
Q ss_pred cCcccceeEEEEeeC---CCCEEEEEeCCCcEEEEECCCCeEEEEEe------cCCeeEEEeeccCCCC-ccEEEEEeCC
Q 013545 100 HGHKYAISSAIWYPV---DTGLFVTGSYDHYVKVWDTNCTRVVMNFK------MPGKVYRTAMSPLAAS-HMLIAAGTED 169 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~---~~~~l~sgs~D~~i~iWd~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~las~s~d 169 (441)
.+|...|.++.|+|. ....+++++.|+.|++||+.++..+..+. +.+.+.++.+++.... ..+|++|+.|
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 94 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR 94 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence 489999999999973 34456666666799999999877665544 3356889999987432 4689999999
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEec-CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccc
Q 013545 170 VQVRLCDIASGAISQTLSGHRDGIMTVEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSL 248 (441)
Q Consensus 170 ~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp-~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (441)
+.|++||+++++.+..+.+|...|.+++|+| ++. +|++++.||+|++||++++++...+..
T Consensus 95 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------- 156 (366)
T 3k26_A 95 GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFGG----------------- 156 (366)
T ss_dssp CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEECS-----------------
T ss_pred CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEecc-----------------
Confidence 9999999999999999999999999999999 665 689999999999999987654433210
Q ss_pred ccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcE
Q 013545 249 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI 328 (441)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i 328 (441)
..+|...|.+++|+|++.+|++++.|++|
T Consensus 157 ---------------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 185 (366)
T 3k26_A 157 ---------------------------------------------------VEGHRDEVLSADYDLLGEKIMSCGMDHSL 185 (366)
T ss_dssp ---------------------------------------------------TTSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ---------------------------------------------------cccccCceeEEEECCCCCEEEEecCCCCE
Confidence 12467789999999999999999999999
Q ss_pred EEeeCCCCCceee------------------------eeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCce
Q 013545 329 RLWDVESGRNTLV------------------------NFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKT 383 (441)
Q Consensus 329 ~~wd~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~ 383 (441)
++||+.+++.... .+.....+......+++. +..+++++. +.+++||+.+++.
T Consensus 186 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 186 KLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp EEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTC
T ss_pred EEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccc
Confidence 9999986532100 000011133444556666 556666654 7899999987644
Q ss_pred --------------EeeecccccceEEEEEcCC--CCeEEEeecCCcEEEeCCCCCCCC
Q 013545 384 --------------CLTFRGHYEYVNCCCFSSQ--DQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 384 --------------~~~l~gh~~~v~~v~fspd--~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
+..+.+|...|++++|+|+ +++|++|+.|+.|++|++.++...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 264 DIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp CGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred cccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 7789999999999999999 999999999999999999887543
No 91
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=4.6e-30 Score=237.21 Aligned_cols=276 Identities=12% Similarity=0.096 Sum_probs=175.4
Q ss_pred eeEEEccCCCC-cE-EEEeeCCCcEEEEECCCCcccCCCCceecc-ceeEEeecc----------cccCcccceeEEEEe
Q 013545 46 INSLQVDLTEE-RY-LLSGASDSSVAVYDVQRATDYEGGGHIAKH-RSVFVVDKQ----------HEHGHKYAISSAIWY 112 (441)
Q Consensus 46 V~~l~~s~~~~-~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~h~~~V~~~~~~ 112 (441)
|.++.|-..+. +. ++++++ .+|++|+..++...+.......+ .+++.+... ...-|...|.+++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 44555543332 23 555554 89999999876221100000000 011111000 012355678778777
Q ss_pred eCC----CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEe--CCCcEEEEEC-CCCceeee
Q 013545 113 PVD----TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT--EDVQVRLCDI-ASGAISQT 185 (441)
Q Consensus 113 ~~~----~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s--~d~~I~vwdl-~~~~~~~~ 185 (441)
| + +..+++++.+ +++|++.+++ ++.+++ .|+.|++|++ ++|+.+..
T Consensus 121 p-d~~~~~~~l~s~g~~--~~v~~l~~g~------------------------lv~ss~~g~d~~V~~~~~s~dG~~~~s 173 (356)
T 2w18_A 121 S-DDESEKQVLLKSGNI--KAVLGLTKRR------------------------LVSSSGTLSDQQVEVMTFAEDGGGKEN 173 (356)
T ss_dssp ------CCEEEEEEEEE--EEEEEETTTE------------------------EEEEESSSTTCEEEEEEECTTSCEEEE
T ss_pred C-CccccccEEEeCCCe--EEEEecCCCc------------------------EEEecccCCCCcEEEEEECCCCceeee
Confidence 6 6 6778888744 7778654333 333322 5889999999 56888888
Q ss_pred ecCCCCCeEEEEEec---CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545 186 LSGHRDGIMTVEWST---SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ 262 (441)
Q Consensus 186 l~~h~~~v~~v~fsp---~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (441)
+.+|...+..++|+| +++ +|+|+|.|++|||||+++++++.+++...
T Consensus 174 ~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g~~----------------------------- 223 (356)
T 2w18_A 174 QFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHIDD----------------------------- 223 (356)
T ss_dssp EEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEECCC-----------------------------
T ss_pred eccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcCCC-----------------------------
Confidence 999999999999999 556 68999999999999999998877764211
Q ss_pred cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE------------EEeecCCcEEE
Q 013545 263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL------------LSAGSDSRIRL 330 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l------------~sgs~D~~i~~ 330 (441)
.|...+.+++|+|+|.++ +||+.|++|++
T Consensus 224 ---------------------------------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 224 ---------------------------------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp ------------------------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred ---------------------------------------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence 112346778888888875 67899999999
Q ss_pred eeCCCCCceeeeeeeEEeccCc-ceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceE-EEEEcCCCCeEE
Q 013545 331 WDVESGRNTLVNFETVRLQTSK-PIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVN-CCCFSSQDQELY 407 (441)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~-~v~fspd~~~l~ 407 (441)
||+.+++...... ..+..+. ...+....++..+++++ .+++++||+.+++++.+|.+|...+. +++|||||++|+
T Consensus 265 Wd~~tgk~l~v~~--~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La 342 (356)
T 2w18_A 265 INPKTTLSVGVML--YCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL 342 (356)
T ss_dssp EETTTTEEEEEEE--ECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred EECCCCEEEEEEE--eeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE
Confidence 9999876321110 0000111 01122222344555553 47899999999999999999988765 589999999999
Q ss_pred EeecCCcEEEeCC
Q 013545 408 TGGNDRQILVWCP 420 (441)
Q Consensus 408 s~s~D~~i~vW~~ 420 (441)
||+.|++||||+.
T Consensus 343 SGS~D~TIklWd~ 355 (356)
T 2w18_A 343 AGQKDGNIFVYHY 355 (356)
T ss_dssp EECTTSCEEEEEE
T ss_pred EEECCCcEEEecC
Confidence 9999999999985
No 92
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=3e-30 Score=251.70 Aligned_cols=242 Identities=16% Similarity=0.195 Sum_probs=189.5
Q ss_pred eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545 106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT 185 (441)
Q Consensus 106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~ 185 (441)
+.++.|+| ++.+|++++.|++|++||+.+++....+..........++++ ..+|++|+.|+.|++||+++++....
T Consensus 59 ~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~ 134 (420)
T 3vl1_A 59 GKGNTFEK-VGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQ---MRRFILGTTEGDIKVLDSNFNLQREI 134 (420)
T ss_dssp CTTCEEEE-EETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSS---SCEEEEEETTSCEEEECTTSCEEEEE
T ss_pred ccceeeee-cCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecC---CCEEEEEECCCCEEEEeCCCcceeee
Confidence 44567777 688999999999999999987665433333333333344443 45899999999999999999999888
Q ss_pred ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545 186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS 265 (441)
Q Consensus 186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (441)
+.+|...|.+++|+|+++ +|++++.|++|++||++++++...
T Consensus 135 ~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~------------------------------------- 176 (420)
T 3vl1_A 135 DQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRT------------------------------------- 176 (420)
T ss_dssp TTSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEE-------------------------------------
T ss_pred cccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceE-------------------------------------
Confidence 899999999999999987 578999999999999986533221
Q ss_pred CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeee
Q 013545 266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET 345 (441)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~ 345 (441)
..+|.+.|.+++|+|++.+|++++.|++|++||+.+++.... +..
T Consensus 177 ----------------------------------~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~ 221 (420)
T 3vl1_A 177 ----------------------------------LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT-FNR 221 (420)
T ss_dssp ----------------------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE-ECB
T ss_pred ----------------------------------EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE-eec
Confidence 235778899999999999999999999999999998753211 110
Q ss_pred EEec---------------------cCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeee-cccccceEEEEEcCC
Q 013545 346 VRLQ---------------------TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQ 402 (441)
Q Consensus 346 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l-~gh~~~v~~v~fspd 402 (441)
.... ......+++++++..+++++. +.+++||+.+++....+ .+|...|.+++|+|+
T Consensus 222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 301 (420)
T 3vl1_A 222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGN 301 (420)
T ss_dssp TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSS
T ss_pred CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCC
Confidence 0000 122233455788888887765 68999999998877665 468899999999999
Q ss_pred CC-eEEEeecCCcEEEeCCCCCC
Q 013545 403 DQ-ELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 403 ~~-~l~s~s~D~~i~vW~~~~~~ 424 (441)
++ +|++|+.|+.|++|++.++.
T Consensus 302 ~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 302 NANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp CTTEEEEEETTSEEEEEETTCTT
T ss_pred CCCEEEEEeCCCeEEEEEcCCCc
Confidence 99 99999999999999998764
No 93
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=7.8e-31 Score=252.21 Aligned_cols=245 Identities=10% Similarity=0.046 Sum_probs=186.6
Q ss_pred cccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC--eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT--RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178 (441)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~ 178 (441)
|..+|.++.|+| ++.+||+|+.|++|++||+.++ +.+..+. +.+.+.++.+++++ .+|++++.|+.|++||++
T Consensus 10 ~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 10 LPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS---NRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp CSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT---CCEEEEETTSSEEEC---
T ss_pred CCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC---CEEEEEeCCCeEEEEEcC
Confidence 556899999987 7889999999999999999987 4554444 35678899998864 479999999999999999
Q ss_pred CCc---eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545 179 SGA---ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS 255 (441)
Q Consensus 179 ~~~---~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (441)
+++ ....+.+|...|.+++|+|+++. |++++.|++|++||++.+......
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~-------------------------- 138 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVS-------------------------- 138 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCC--------------------------
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceee--------------------------
Confidence 987 56778899999999999999875 789999999999998764310000
Q ss_pred cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccccccccee-eccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545 256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATA-HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~ 334 (441)
..... |.+.|++++|+|++.+|++++.|++|++||+.
T Consensus 139 ------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 139 ------------------------------------------KHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp ------------------------------------------EEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred ------------------------------------------eEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence 00122 77889999999999999999999999999986
Q ss_pred CCCc--------------eeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCce----EeeecccccceE
Q 013545 335 SGRN--------------TLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKT----CLTFRGHYEYVN 395 (441)
Q Consensus 335 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~----~~~l~gh~~~v~ 395 (441)
.... ........ .+......++++|++.++++++. +.+++||+.+++. +.++.+|..+|.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 255 (377)
T 3dwl_C 177 VRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLR 255 (377)
T ss_dssp CSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEE
T ss_pred ecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceE
Confidence 4321 01111111 33445667899999998887755 6899999999987 889999999999
Q ss_pred EEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 396 CCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 396 ~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
+++|+||+++|++|+.|+.+ +|+..
T Consensus 256 ~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 256 SLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 99999999999999877777 55444
No 94
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.7e-30 Score=242.55 Aligned_cols=265 Identities=7% Similarity=0.070 Sum_probs=192.2
Q ss_pred CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 013545 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN 134 (441)
Q Consensus 55 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~ 134 (441)
++++|+||+.||+|++||+.++.... .. ....|.++.++|. ++|++.|++|++|+..
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~------------~~-------~~~~v~~~~~~~~----~~s~s~D~~i~~w~~~ 103 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTIT------------TI-------TTPNPRTGGEHPA----IISRGPCNRLLLLYPG 103 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEE------------EE-------EEECCCTTCCCCS----EEEECSTTEEEEEETT
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEE------------EE-------ecCCceeeeeCCc----eEEecCCCeEEEEEcc
Confidence 46789999999999999998764310 00 0234555556552 9999999999999665
Q ss_pred ---------CCeEEEEEec--CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-CCCCCeEEEEEecCC
Q 013545 135 ---------CTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSS 202 (441)
Q Consensus 135 ---------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~ 202 (441)
+++.+..+.. .+.+..+.++|.. +..++++++.|+.|++||+++++....+. .|...|.+++|+|++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg 182 (343)
T 3lrv_A 104 NQITILDSKTNKVLREIEVDSANEIIYMYGHNEV-NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS 182 (343)
T ss_dssp TEEEEEETTTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS
T ss_pred CceEEeecCCcceeEEeecCCCCCEEEEEcCCCC-CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC
Confidence 5554555543 3568888888721 23489999999999999999999876664 456689999999998
Q ss_pred CcEEEEeecCCcEEEEEcCCCcee-eEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 203 EWILVTGGCDGAIRFWDIRRAGCF-RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 203 ~~~l~s~s~Dg~I~iWD~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
. +|++|+.||.|++||++++.+. ..
T Consensus 183 ~-~lasg~~dg~i~iwd~~~~~~~~~~----------------------------------------------------- 208 (343)
T 3lrv_A 183 L-LLALYSPDGILDVYNLSSPDQASSR----------------------------------------------------- 208 (343)
T ss_dssp C-EEEEECTTSCEEEEESSCTTSCCEE-----------------------------------------------------
T ss_pred C-EEEEEcCCCEEEEEECCCCCCCccE-----------------------------------------------------
Confidence 7 5799999999999999865322 11
Q ss_pred CCCcccccCCCcccccccce-eeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee--eeeeeEEeccCcceEEEe
Q 013545 282 KGSVRQRLHPGMLSSQDRAT-AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL--VNFETVRLQTSKPIQLAT 358 (441)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~ 358 (441)
+. +|.++|++|+|+|+|.+|++++. ++|++||+++.+... ..+......... ..+++
T Consensus 209 ------------------~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 268 (343)
T 3lrv_A 209 ------------------FPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGT-VTYDI 268 (343)
T ss_dssp ------------------CCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CC-EEEEE
T ss_pred ------------------EeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccc-eEEEE
Confidence 12 37788999999999999999994 599999999875321 111000011111 35889
Q ss_pred eCCCcEEEEeC--CCceEEEEccCCceEeeecccccceEEEEEcC---CCCeEEEeecCCcEEEeCCC
Q 013545 359 TQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS---QDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 359 ~~~~~~~~~~~--~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp---d~~~l~s~s~D~~i~vW~~~ 421 (441)
++++.++++++ ...+++|++.+....-.. .++.+++|+| +.+.|++++.|+.++++-..
T Consensus 269 ~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 269 DDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred CCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 99999988843 678999999665432222 5688999999 89999999999999988644
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6.3e-29 Score=241.42 Aligned_cols=250 Identities=18% Similarity=0.302 Sum_probs=196.9
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
.+|.+.|++++|+| ++++|++|+.||.|+|||+.++... ....+|...|.++.+ ++.+|
T Consensus 131 ~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~-----------------~~~~~~~~~v~~~~~---~~~~l 189 (401)
T 4aez_A 131 TDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKL-----------------RTMAGHQARVGCLSW---NRHVL 189 (401)
T ss_dssp CCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEE---ETTEE
T ss_pred cCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEE-----------------EEecCCCCceEEEEE---CCCEE
Confidence 35899999999997 6789999999999999999765421 112478999999988 35799
Q ss_pred EEEeCCCcEEEEECCC-CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEE
Q 013545 120 VTGSYDHYVKVWDTNC-TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~ 197 (441)
++|+.|++|++||+.. ...+..+. +.+.+..+.++++. .+|++|+.|+.|++||+++++....+.+|...|.+++
T Consensus 190 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~ 266 (401)
T 4aez_A 190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG---LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA 266 (401)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEE
T ss_pred EEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC---CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEE
Confidence 9999999999999984 44455554 46678889998853 5899999999999999999999999999999999999
Q ss_pred EecCCCcEEEEee--cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 198 WSTSSEWILVTGG--CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 198 fsp~~~~~l~s~s--~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
|+|++..++++++ .|+.|++||++++.+...+
T Consensus 267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~---------------------------------------------- 300 (401)
T 4aez_A 267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV---------------------------------------------- 300 (401)
T ss_dssp ECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE----------------------------------------------
T ss_pred ECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE----------------------------------------------
Confidence 9999888888876 7999999999876544332
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEE--eecCCcEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS--AGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s--gs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
.|...|.+++|+|++.+|++ |+.|++|++||+.+++... ......+....
T Consensus 301 --------------------------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~--~~~~~~h~~~v 352 (401)
T 4aez_A 301 --------------------------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK--QVDIPAHDTRV 352 (401)
T ss_dssp --------------------------ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE--EEEEECCSSCC
T ss_pred --------------------------eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee--EEEecCCCCCE
Confidence 13356899999999999999 5589999999998754221 12233445667
Q ss_pred eEEEeeCCCcEEEEeCC-CceEEEEccCCceEeee
Q 013545 354 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF 387 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l 387 (441)
..+++++++..+++++. +.+++|++.+++.+...
T Consensus 353 ~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 353 LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp CEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 78899999999888765 68999999998876654
No 96
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=2e-29 Score=243.11 Aligned_cols=254 Identities=12% Similarity=0.108 Sum_probs=200.8
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vw 175 (441)
..+|...|.++.|++....+|++|+.|++|++||+.+++....+. +.+.+.++.+++. +..+|++++.|+.|++|
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF--NTNQLFVSSIRGATTLR 146 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT--EEEEEEEEETTTEEEEE
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC--CCCEEEEEeCCCEEEEE
Confidence 358999999999998433899999999999999999888776665 4567889999883 23589999999999999
Q ss_pred ECCCCceeeeec---CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545 176 DIASGAISQTLS---GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ 252 (441)
Q Consensus 176 dl~~~~~~~~l~---~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (441)
|+++ ..+..+. +|...|.+++|+|+++ +|++++.|+.|++||++ ++++..
T Consensus 147 d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~------------------------ 199 (383)
T 3ei3_B 147 DFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFK------------------------ 199 (383)
T ss_dssp ETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEE------------------------
T ss_pred ECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEE------------------------
Confidence 9986 4444554 4458899999999987 57999999999999984 222211
Q ss_pred cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEe
Q 013545 253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLW 331 (441)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~w 331 (441)
..+|.+.|.+++|+|++. +|++++.|++|++|
T Consensus 200 -----------------------------------------------~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 232 (383)
T 3ei3_B 200 -----------------------------------------------EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLW 232 (383)
T ss_dssp -----------------------------------------------EECSSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred -----------------------------------------------eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEE
Confidence 235778899999999999 99999999999999
Q ss_pred eCCCCCceeeeeeeEEeccCcceEEEeeC-CCcEEEEeCC-CceEEEEccCCceEeeecccc-----------------c
Q 013545 332 DVESGRNTLVNFETVRLQTSKPIQLATTQ-DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHY-----------------E 392 (441)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~-----------------~ 392 (441)
|+.+.+......... .+......+++++ ++..+++++. +.+++||+.+++....+.+|. +
T Consensus 233 d~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 311 (383)
T 3ei3_B 233 DLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMY 311 (383)
T ss_dssp EGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSS
T ss_pred eCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCC
Confidence 998743211111222 2455667789999 9988887765 689999999988877777664 3
Q ss_pred ceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccCC
Q 013545 393 YVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAG 431 (441)
Q Consensus 393 ~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~ 431 (441)
.+..++|+||+++ +|+.|++|++|++.++.......+
T Consensus 312 ~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~ 348 (383)
T 3ei3_B 312 DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD 348 (383)
T ss_dssp SEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB
T ss_pred CceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC
Confidence 4566889999988 899999999999998876555544
No 97
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=6.2e-30 Score=243.32 Aligned_cols=252 Identities=13% Similarity=0.246 Sum_probs=195.3
Q ss_pred cCcccceeEEEEeeCCCCEEEEEeC---CCcEEEEECCCCeEEE--EEecCCeeEEEeeccCCCCccEEEEEeCCCcEEE
Q 013545 100 HGHKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNCTRVVM--NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL 174 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~sgs~---D~~i~iWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~v 174 (441)
.+|...|.++.|+|....++++|+. |++|++||+.+++... ...+...+.++.+++...+..+|++|+.|+.|++
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 94 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI 94 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence 4799999999999843345567776 9999999999887643 3456678999999987433468999999999999
Q ss_pred EECCCCc-eeeeecCCCCCeEEEEE------ecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCccccc
Q 013545 175 CDIASGA-ISQTLSGHRDGIMTVEW------STSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRK 246 (441)
Q Consensus 175 wdl~~~~-~~~~l~~h~~~v~~v~f------sp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 246 (441)
||+++++ .+..+.+|...|.++.| +|+++ .|++++.||+|++||++++. ....+....
T Consensus 95 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~------------- 160 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQ------------- 160 (357)
T ss_dssp ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCT-------------
T ss_pred EeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccC-------------
Confidence 9999998 88899999999999965 57776 57899999999999998653 222211000
Q ss_pred ccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEE----EccCCCEEEEe
Q 013545 247 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK----VTEDGMYLLSA 322 (441)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~----~s~dg~~l~sg 322 (441)
..+...+.+++ |+|++.+|+++
T Consensus 161 ------------------------------------------------------~~~~~~v~~~~~~~~~~~~~~~l~~~ 186 (357)
T 3i2n_A 161 ------------------------------------------------------GENKRDCWTVAFGNAYNQEERVVCAG 186 (357)
T ss_dssp ------------------------------------------------------TSCCCCEEEEEEECCCC-CCCEEEEE
T ss_pred ------------------------------------------------------CCCCCceEEEEEEeccCCCCCEEEEE
Confidence 01123577777 78999999999
Q ss_pred ecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeC---CCcEEEEeCC-CceEEEEccCCceEeeec-----ccccc
Q 013545 323 GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ---DPAVVFVPCM-TAVKAFDIWSGKTCLTFR-----GHYEY 393 (441)
Q Consensus 323 s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~wd~~~~~~~~~l~-----gh~~~ 393 (441)
+.|++|++||+.+++... ..........+.+++ ++..+++++. +.+++||+.+++....+. +|...
T Consensus 187 ~~d~~i~i~d~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 261 (357)
T 3i2n_A 187 YDNGDIKLFDLRNMALRW-----ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKST 261 (357)
T ss_dssp ETTSEEEEEETTTTEEEE-----EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSC
T ss_pred ccCCeEEEEECccCceee-----ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCC
Confidence 999999999999875321 122345566788888 7888777654 689999998876655544 99999
Q ss_pred eEEEEEcCCCC-eEEEeecCCcEEEeCCCCCC
Q 013545 394 VNCCCFSSQDQ-ELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 394 v~~v~fspd~~-~l~s~s~D~~i~vW~~~~~~ 424 (441)
|.+++|+|+++ +|++|+.|+.|++|++..+.
T Consensus 262 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 262 VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 99999999998 89999999999999987654
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=2.3e-30 Score=243.42 Aligned_cols=211 Identities=21% Similarity=0.303 Sum_probs=160.9
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeE--EEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV--VMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vw 175 (441)
..+|++.|.++.|++ ++.+||||+.|++|++||+.++.. +..+. +.+.+.++.|++.. ...+|++|+.|+.|++|
T Consensus 9 ~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~-~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM-YGNILASCSYDRKVIIW 86 (316)
T ss_dssp -----CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG-GSSCEEEEETTSCEEEE
T ss_pred cccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC-CCCEEEEEECCCEEEEE
Confidence 458999999999987 789999999999999999987753 44444 45678889887532 13479999999999999
Q ss_pred ECCCCc--eeeeecCCCCCeEEEEEecC--CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545 176 DIASGA--ISQTLSGHRDGIMTVEWSTS--SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG 251 (441)
Q Consensus 176 dl~~~~--~~~~l~~h~~~v~~v~fsp~--~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (441)
|+++++ ....+.+|...|.+++|+|+ +. +|++|+.|++|++||++........
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~---------------------- 143 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVK---------------------- 143 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEEC----------------------
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCccee----------------------
Confidence 999874 56678899999999999998 54 5799999999999998754211100
Q ss_pred ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC----------------
Q 013545 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED---------------- 315 (441)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d---------------- 315 (441)
....+|...|.+++|+|+
T Consensus 144 ----------------------------------------------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 177 (316)
T 3bg1_A 144 ----------------------------------------------KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPN 177 (316)
T ss_dssp ----------------------------------------------CBTTSSSSCBCCCEECCCCCC------CCSCCCC
T ss_pred ----------------------------------------------eeeccccCCcceEEEccccCCccccccccccCcc
Confidence 001234455666667665
Q ss_pred -CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccce
Q 013545 316 -GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYV 394 (441)
Q Consensus 316 -g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v 394 (441)
+.+|++|+.|++|++||+...... +...++.+|.++|
T Consensus 178 ~~~~l~sgs~D~~v~lWd~~~~~~~------------------------------------------~~~~~l~~h~~~V 215 (316)
T 3bg1_A 178 YIKRFASGGCDNLIKLWKEEEDGQW------------------------------------------KEEQKLEAHSDWV 215 (316)
T ss_dssp CCCBEECCBTTSBCCEEEECTTSCE------------------------------------------EEEECCBCCSSCE
T ss_pred ccceEEEecCCCeEEEEEeCCCCcc------------------------------------------ceeeecccCCCce
Confidence 478999999999999998643210 1234567899999
Q ss_pred EEEEEcCCC----CeEEEeecCCcEEEeCCCC
Q 013545 395 NCCCFSSQD----QELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 395 ~~v~fspd~----~~l~s~s~D~~i~vW~~~~ 422 (441)
.+++|+|++ ++|+||+.|++|+||++.+
T Consensus 216 ~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 216 RDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp EEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred EEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 999999997 7899999999999999876
No 99
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-30 Score=253.02 Aligned_cols=254 Identities=15% Similarity=0.229 Sum_probs=194.3
Q ss_pred cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC---Ce---EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC---TR---VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~ 173 (441)
.+|.+.|.+++|+|.++.+||||+.|++|++||+.+ +. ....+.+.+.+.++.+++.. .+|++|+.|+.|+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~s~dg~i~ 136 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF---DAFAVSSKDGQII 136 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS---SEEEEEETTSEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC---CEEEEEeCCCEEE
Confidence 579999999999975788999999999999999866 32 34555677889999999743 4899999999999
Q ss_pred EEECC---CCceeeeecC------------CCCCeEEEE--EecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccc
Q 013545 174 LCDIA---SGAISQTLSG------------HRDGIMTVE--WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL 236 (441)
Q Consensus 174 vwdl~---~~~~~~~l~~------------h~~~v~~v~--fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~ 236 (441)
+||++ +++....+.+ +...+.++. ++|++. +|++++.|++|++||+++++++..+..
T Consensus 137 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~----- 210 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLERLQIIEN----- 210 (437)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCEEEEEEC-----
T ss_pred EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeEEEcc-----
Confidence 99995 5655544332 455566666 446665 689999999999999987655443311
Q ss_pred cCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC
Q 013545 237 GRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG 316 (441)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 316 (441)
..|.+.|++++|+|++
T Consensus 211 ----------------------------------------------------------------~~h~~~v~~~~~s~~~ 226 (437)
T 3gre_A 211 ----------------------------------------------------------------SPRHGAVSSICIDEEC 226 (437)
T ss_dssp ----------------------------------------------------------------CGGGCCEEEEEECTTS
T ss_pred ----------------------------------------------------------------CCCCCceEEEEECCCC
Confidence 1266789999999999
Q ss_pred CEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc-CcceEE----EeeCCCcEEEEeCC-CceEEEEccCCceEeeecc-
Q 013545 317 MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT-SKPIQL----ATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG- 389 (441)
Q Consensus 317 ~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g- 389 (441)
.+|++|+.|++|++||+.+++.. ....... .....+ .+++++..+++++. +.+++||+.+++.+..+.+
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 302 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVLI----RSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINS 302 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEEE----EEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESS
T ss_pred CEEEEEcCCCeEEEEEcCCccEE----EEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcC
Confidence 99999999999999999976431 1212112 233345 33456667777766 5799999999987776654
Q ss_pred -------------------------cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccCC
Q 013545 390 -------------------------HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAG 431 (441)
Q Consensus 390 -------------------------h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~~ 431 (441)
|...|++++|+ ++++|+||+.|++|++|++.++.......+
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 303 DEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp SSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred CCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence 56678899999 779999999999999999998886666555
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.7e-29 Score=239.13 Aligned_cols=255 Identities=17% Similarity=0.149 Sum_probs=198.7
Q ss_pred cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe----EEEEEecCCeeEEEeeccCCCCcc-EEEEEeCCCcEEE
Q 013545 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR----VVMNFKMPGKVYRTAMSPLAASHM-LIAAGTEDVQVRL 174 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~las~s~d~~I~v 174 (441)
.+|...|.++.|+| ++.+|++++.|++|++||+.++. ......+.+.+.++.++++ .. +|++|+.|+.|++
T Consensus 8 ~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 8 QAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN---TDLQIYVGTVQGEILK 83 (342)
T ss_dssp SCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES---SSEEEEEEETTSCEEE
T ss_pred cCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC---CCcEEEEEcCCCeEEE
Confidence 47999999999998 78899999999999999998877 5555566778899999885 45 7899999999999
Q ss_pred EEC-CCCceeeeecC--CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545 175 CDI-ASGAISQTLSG--HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG 251 (441)
Q Consensus 175 wdl-~~~~~~~~l~~--h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (441)
||+ ++++. ..+.+ |...|.+++|+| +. +|++++.|+.|++||+++...-.....
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------------- 140 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVK-------------------- 140 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEE--------------------
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEccccccccccccc--------------------
Confidence 999 88765 67788 999999999999 66 578999999999999864100000000
Q ss_pred ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe
Q 013545 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331 (441)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w 331 (441)
.. ... ...|...|.+++|+|++ +++++.|+.|++|
T Consensus 141 -------------------------------~~-----------~~~-~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~ 175 (342)
T 1yfq_A 141 -------------------------------NL-----------NSN-NTKVKNKIFTMDTNSSR--LIVGMNNSQVQWF 175 (342)
T ss_dssp -------------------------------ES-----------CSS-SSSSCCCEEEEEECSSE--EEEEESTTEEEEE
T ss_pred -------------------------------CC-----------eee-EEeeCCceEEEEecCCc--EEEEeCCCeEEEE
Confidence 00 000 01255779999999988 9999999999999
Q ss_pred eCCC-CCceeeeeeeEEeccCcceEEEeeC-CCcEEEEeCC-CceEEEEccCC------ceEeeeccccc---------c
Q 013545 332 DVES-GRNTLVNFETVRLQTSKPIQLATTQ-DPAVVFVPCM-TAVKAFDIWSG------KTCLTFRGHYE---------Y 393 (441)
Q Consensus 332 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~wd~~~~------~~~~~l~gh~~---------~ 393 (441)
|+.+ +...... ........+..+++++ ++..+++++. +.+++|++... +....+.+|.. .
T Consensus 176 d~~~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
T 1yfq_A 176 RLPLCEDDNGTI--EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253 (342)
T ss_dssp ESSCCTTCCCEE--EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCC
T ss_pred ECCcccccccee--eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccccccee
Confidence 9987 5432111 1111234456778888 8888877655 68999999876 77888888866 9
Q ss_pred eEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545 394 VNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV 428 (441)
Q Consensus 394 v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~ 428 (441)
|.+++|+|++++|++|+.|+.|++|++.++.....
T Consensus 254 i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288 (342)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh
Confidence 99999999999999999999999999987765433
No 101
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=3.7e-29 Score=239.51 Aligned_cols=249 Identities=12% Similarity=0.087 Sum_probs=199.7
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe--EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
.|..+|.++.|+| ++++|++|+.|++|++||+.+++ .+..+. +.+.+..+.+++++ .+|++++.|+.|++||+
T Consensus 6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS---NRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT---TEEEEEETTSCEEEEEE
T ss_pred ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC---CEEEEEcCCCeEEEEEC
Confidence 5888999999987 78899999999999999999887 666665 45678899998853 48899999999999999
Q ss_pred CCCceee--eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545 178 ASGAISQ--TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS 255 (441)
Q Consensus 178 ~~~~~~~--~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (441)
++++... .+.+|...|.+++|+|+++ +|++++.|+.|++||++.........
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~------------------------- 135 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCK------------------------- 135 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEE-------------------------
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeee-------------------------
Confidence 9887544 3468999999999999987 57899999999999987643111100
Q ss_pred cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545 256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~ 335 (441)
.....|...|++++|+|++.+|++++.|++|++||+..
T Consensus 136 ------------------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (372)
T 1k8k_C 136 ------------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 173 (372)
T ss_dssp ------------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred ------------------------------------------eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence 00124667899999999999999999999999999752
Q ss_pred CCc--------------eeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEc
Q 013545 336 GRN--------------TLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFS 400 (441)
Q Consensus 336 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs 400 (441)
... ..........+......+++++++..+++++. +.+++||+.+++.+..+.+|..+|.+++|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 253 (372)
T 1k8k_C 174 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI 253 (372)
T ss_dssp TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE
T ss_pred ccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEe
Confidence 110 00111122223445667889999988887765 689999999999999999999999999999
Q ss_pred CCCCeEEEeecCCcEEEeCCCC
Q 013545 401 SQDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 401 pd~~~l~s~s~D~~i~vW~~~~ 422 (441)
|++++|++| .|+.|++|++..
T Consensus 254 ~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 254 TESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ETTEEEEEE-TTSSCEEEEEET
T ss_pred cCCCEEEEE-eCCeEEEEEccC
Confidence 999988877 899999999987
No 102
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.4e-28 Score=239.25 Aligned_cols=284 Identities=12% Similarity=0.089 Sum_probs=220.4
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
...+.+++|+| ++.++++++.|++|++||+.+++... ........+|...|.++.+.+ ++.+++++
T Consensus 122 ~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~------------~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~ 187 (433)
T 3bws_A 122 GFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVR------------LSPPEKYKKKLGFVETISIPE-HNELWVSQ 187 (433)
T ss_dssp SSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEE------------ECCCHHHHTTCCEEEEEEEGG-GTEEEEEE
T ss_pred CCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEee------------ecCcccccccCCceeEEEEcC-CCEEEEEE
Confidence 35577999997 77889999999999999998664210 011112347888999999865 78899999
Q ss_pred eCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS 201 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~ 201 (441)
+.|++|++||+.+++.+..+.. ...+..+.++++. ..++++++.|+.|++||+++++.+..+..+ ..+.+++|+|+
T Consensus 188 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~ 264 (433)
T 3bws_A 188 MQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR--DLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKD 264 (433)
T ss_dssp GGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT--TEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTT
T ss_pred CCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC--CEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCC
Confidence 9999999999999988877764 4467788888754 345567778999999999999988887765 45899999999
Q ss_pred CCcEEEEee--------cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 202 SEWILVTGG--------CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 202 ~~~~l~s~s--------~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
++. +++++ .|+.|++||+++++....
T Consensus 265 g~~-l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~--------------------------------------------- 298 (433)
T 3bws_A 265 GKE-LYIAQFSASNQESGGGRLGIYSMDKEKLIDT--------------------------------------------- 298 (433)
T ss_dssp SSE-EEEEEEESCTTCSCCEEEEEEETTTTEEEEE---------------------------------------------
T ss_pred CCE-EEEEECCCCccccCCCeEEEEECCCCcEEee---------------------------------------------
Confidence 985 45555 488999999986543221
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~ 352 (441)
..|...+.+++|+|++++ +++++.|++|++||+.+++.. .... ....
T Consensus 299 ---------------------------~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~~-~~~~ 346 (433)
T 3bws_A 299 ---------------------------IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSIP-VFDK 346 (433)
T ss_dssp ---------------------------EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE----EEEE-CSSS
T ss_pred ---------------------------ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE----EEec-CCCC
Confidence 134456888999999975 567799999999999976532 1111 2345
Q ss_pred ceEEEeeCCCcEEEEeCC----------------CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec-CCcE
Q 013545 353 PIQLATTQDPAVVFVPCM----------------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN-DRQI 415 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~----------------~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~-D~~i 415 (441)
+..+++++++..+++++. +.+++||+.+++....+.++ ..+.+++|+|||++|++++. |++|
T Consensus 347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i 425 (433)
T 3bws_A 347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQI 425 (433)
T ss_dssp EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEE
T ss_pred CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeE
Confidence 677899999988877654 28999999999998888874 57899999999999998775 9999
Q ss_pred EEeCCCC
Q 013545 416 LVWCPSR 422 (441)
Q Consensus 416 ~vW~~~~ 422 (441)
++|+++.
T Consensus 426 ~v~~~~~ 432 (433)
T 3bws_A 426 RVYRRDG 432 (433)
T ss_dssp EEEEETT
T ss_pred EEEEecC
Confidence 9999863
No 103
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.4e-28 Score=235.93 Aligned_cols=269 Identities=14% Similarity=0.128 Sum_probs=211.9
Q ss_pred cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE-EEEeCCCcEEEEECCC
Q 013545 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHYVKVWDTNC 135 (441)
Q Consensus 57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l-~sgs~D~~i~iWd~~~ 135 (441)
.++++++.|++|++||+.+++.. .. ..+|. .+.++.+++ ++.++ ++++.|++|++||+.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~------------~~-----~~~~~-~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~ 63 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVT------------AT-----IPVGS-NPMGAVISP-DGTKVYVANAHSNDVSIIDTAT 63 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEE------------EE-----EECSS-SEEEEEECT-TSSEEEEEEGGGTEEEEEETTT
T ss_pred EEEEEcCCCCEEEEEECCCCeEE------------EE-----eecCC-CcceEEECC-CCCEEEEECCCCCeEEEEECCC
Confidence 46899999999999999865421 01 11333 477888887 67665 7888999999999999
Q ss_pred CeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcE
Q 013545 136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI 215 (441)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I 215 (441)
++++..+.....+..+.+++++. .++++++.++.|++||+++++.+..+..| ..+.+++|+|+++.++++++.|+.|
T Consensus 64 ~~~~~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v 140 (391)
T 1l0q_A 64 NNVIATVPAGSSPQGVAVSPDGK--QVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTV 140 (391)
T ss_dssp TEEEEEEECSSSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred CeEEEEEECCCCccceEECCCCC--EEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEE
Confidence 99999888888888899988643 45566667899999999999988887755 4689999999998776889999999
Q ss_pred EEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccc
Q 013545 216 RFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLS 295 (441)
Q Consensus 216 ~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (441)
++||++++++...+.
T Consensus 141 ~~~d~~~~~~~~~~~----------------------------------------------------------------- 155 (391)
T 1l0q_A 141 SVINTVTKAVINTVS----------------------------------------------------------------- 155 (391)
T ss_dssp EEEETTTTEEEEEEE-----------------------------------------------------------------
T ss_pred EEEECCCCcEEEEEe-----------------------------------------------------------------
Confidence 999998765433221
Q ss_pred ccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC----C
Q 013545 296 SQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC----M 370 (441)
Q Consensus 296 ~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 370 (441)
. ...+.+++|+|++++| ++++.|++|++||+.+++... .. .....+..+++++++..+++++ .
T Consensus 156 ------~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~----~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~ 223 (391)
T 1l0q_A 156 ------V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID----TV-KVEAAPSGIAVNPEGTKAYVTNVDKYF 223 (391)
T ss_dssp ------C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EE-ECSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred ------c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE----EE-ecCCCccceEECCCCCEEEEEecCcCC
Confidence 1 1236789999999987 678889999999998865321 11 1234556788999998887764 4
Q ss_pred CceEEEEccCCceEeeecccccceEEEEEcCCCCeE-EEeecCCcEEEeCCCCCCC
Q 013545 371 TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL-YTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 371 ~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l-~s~s~D~~i~vW~~~~~~~ 425 (441)
..+++||+.+++.+..+..|.. +.+++|+||+++| ++++.|+.|++|++.++..
T Consensus 224 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 224 NTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp CEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 7899999999999888888764 7999999999987 6788999999999987654
No 104
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.7e-28 Score=226.65 Aligned_cols=243 Identities=19% Similarity=0.301 Sum_probs=196.0
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
..+|...|.++.+ + ++.+|++|+.|++|++||+.++.....+. +.+.+.++.++++. .+|++++.|+.|++|++
T Consensus 14 l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 14 LKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK---ELLLFGGKDTMINGVPL 88 (313)
T ss_dssp ECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTT---TEEEEEETTSCEEEEET
T ss_pred hhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCC---CEEEEecCCCeEEEEEe
Confidence 4589999999988 5 68899999999999999999888776655 46778899998854 58999999999999998
Q ss_pred CCC---ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545 178 ASG---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS 254 (441)
Q Consensus 178 ~~~---~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (441)
... +.+..+.+|...|.++.|. ++ .+++++.|+.|++||. +.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d~--~~~~~~-------------------------- 137 (313)
T 3odt_A 89 FATSGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWKE--GSLVYN-------------------------- 137 (313)
T ss_dssp TCCTTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEET--TEEEEE--------------------------
T ss_pred eecCCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEcC--CcEEEe--------------------------
Confidence 765 5567889999999999994 34 5789999999999992 221111
Q ss_pred CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeC
Q 013545 255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDV 333 (441)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~ 333 (441)
...|..++.+++|+| ++.++++++.|++|++||.
T Consensus 138 ---------------------------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 172 (313)
T 3odt_A 138 ---------------------------------------------LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172 (313)
T ss_dssp ---------------------------------------------EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred ---------------------------------------------cccCCCceeEEEEccCCCCEEEEEECCCCEEEEec
Confidence 234667899999998 9999999999999999994
Q ss_pred CCCCceeeeeeeEEe-ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC
Q 013545 334 ESGRNTLVNFETVRL-QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412 (441)
Q Consensus 334 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D 412 (441)
... ...... +......+++++++.++.....+.+++||+.+++.+..+.+|..+|.+++|+|++ .|++++.|
T Consensus 173 ~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d 245 (313)
T 3odt_A 173 DKV------IKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGED 245 (313)
T ss_dssp TEE------EEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETT
T ss_pred Cce------EEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecC
Confidence 321 112222 3445567888888884444455789999999999999999999999999999999 69999999
Q ss_pred CcEEEeCCCCCCCCCcc
Q 013545 413 RQILVWCPSRHISDGVD 429 (441)
Q Consensus 413 ~~i~vW~~~~~~~~~~~ 429 (441)
+.|++|++.+++.....
T Consensus 246 g~v~iwd~~~~~~~~~~ 262 (313)
T 3odt_A 246 RTVRIWSKENGSLKQVI 262 (313)
T ss_dssp SEEEEECTTTCCEEEEE
T ss_pred CEEEEEECCCCceeEEE
Confidence 99999999888755443
No 105
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=7.6e-29 Score=240.81 Aligned_cols=260 Identities=16% Similarity=0.266 Sum_probs=199.4
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+.+|.+.|++++|+|.++++|++|+.||+|+|||+.++..... ....+ ....+|...|.++.|+|....
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~-----~~~~~-----~~~~~h~~~v~~~~~~p~~~~ 145 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP-----LREPV-----ITLEGHTKRVGIVAWHPTAQN 145 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC-----BCSCS-----EEEECCSSCEEEEEECSSBTT
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc-----cCCce-----EEecCCCCeEEEEEECcCCCC
Confidence 45689999999999975678999999999999999986632110 00011 123479999999999985447
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee-cCCCCC-
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHRDG- 192 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l-~~h~~~- 192 (441)
+|++|+.|++|++||+.+++.+..+. +.+.+.++.+++++ .+|++++.|+.|++||+++++.+..+ .+|.+.
T Consensus 146 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (402)
T 2aq5_A 146 VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG---ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR 222 (402)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS---SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSS
T ss_pred EEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC---CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCc
Confidence 99999999999999999999988873 45678899998854 47899999999999999999998888 788876
Q ss_pred eEEEEEecCCCcEEEEe---ecCCcEEEEEcCCCce-eeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545 193 IMTVEWSTSSEWILVTG---GCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG 268 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~---s~Dg~I~iWD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (441)
+.++.|+|++. +|++| +.|+.|++||+++... ....
T Consensus 223 ~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~--------------------------------------- 262 (402)
T 2aq5_A 223 PVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQ--------------------------------------- 262 (402)
T ss_dssp CCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEE---------------------------------------
T ss_pred ceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEE---------------------------------------
Confidence 89999999986 57787 7899999999976421 0000
Q ss_pred CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceeeeeeeEE
Q 013545 269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNFETVR 347 (441)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~~~~~~~ 347 (441)
...|...+.+++|+|++.+|+ +|+.|++|++||+.+++.....+....
T Consensus 263 -------------------------------~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~ 311 (402)
T 2aq5_A 263 -------------------------------ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS 311 (402)
T ss_dssp -------------------------------ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC
T ss_pred -------------------------------eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc
Confidence 012445688999999999986 566899999999998764222222221
Q ss_pred eccCcceEEEeeCCCcEEEEeCCCceEEEEccCCce
Q 013545 348 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKT 383 (441)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~ 383 (441)
.......+++++++..+++ ....+++|++.+++.
T Consensus 312 -~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 312 -SKESQRGMGYMPKRGLEVN-KCEIARFYKLHERKC 345 (402)
T ss_dssp -CSSCCSEEEECCGGGSCGG-GTEEEEEEEEETTEE
T ss_pred -cCCcccceEEeccccccee-cceeEEEEEcCCCcE
Confidence 2356677889998877654 445899999987654
No 106
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.3e-28 Score=231.36 Aligned_cols=260 Identities=15% Similarity=0.247 Sum_probs=208.7
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
..+|+..|.++.|++ ++.+|++|+.|++|++||+.+++.+..+. +.+.+..+.++++. .+|++++.|+.|++||+
T Consensus 28 l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 28 LTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT---KYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTTEEEEEET
T ss_pred EEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC---CEEEEEeCCCeEEEEEC
Confidence 358999999999987 78999999999999999999999888876 45678889998853 48899999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCcEEEEeecC-----CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD-----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ 252 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D-----g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (441)
++++.+..+. |...|.++.|+|+++. +++++.+ +.|++||++.......+.....
T Consensus 104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~------------------ 163 (369)
T 3zwl_B 104 SNGQCVATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSE------------------ 163 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS------------------
T ss_pred CCCcEEEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeeccccc------------------
Confidence 9999988887 8899999999999984 6788888 9999999875432111100000
Q ss_pred cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeecc--CeEEEEEccCCCEEEEeecCCcEEE
Q 013545 253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG--AVTGLKVTEDGMYLLSAGSDSRIRL 330 (441)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~D~~i~~ 330 (441)
........|.+ .+.+++|+|++.+|++++.|+.|++
T Consensus 164 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 201 (369)
T 3zwl_B 164 ------------------------------------------EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201 (369)
T ss_dssp ------------------------------------------SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred ------------------------------------------ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence 00001123444 7999999999999999999999999
Q ss_pred eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe
Q 013545 331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG 409 (441)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~ 409 (441)
||+.+.... ......+......+++++++..+++++. +.+++||+.+++....+. |...+.+++|+|++++++++
T Consensus 202 ~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 277 (369)
T 3zwl_B 202 YDVSNNYEY---VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILG 277 (369)
T ss_dssp EETTTTTEE---EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEE
T ss_pred EECCCCcEe---EEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEe
Confidence 999874322 2233334556677899999998887754 689999999999988888 78889999999999999999
Q ss_pred ecCC--------------cEEEeCCCCCCCCCc
Q 013545 410 GNDR--------------QILVWCPSRHISDGV 428 (441)
Q Consensus 410 s~D~--------------~i~vW~~~~~~~~~~ 428 (441)
+.++ .|++|+..++.....
T Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 310 (369)
T 3zwl_B 278 GGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR 310 (369)
T ss_dssp ECCC-------------CEEEEEETTTCCEEEE
T ss_pred ecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence 9988 899999987765443
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-29 Score=238.09 Aligned_cols=229 Identities=10% Similarity=0.111 Sum_probs=175.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC---------CCceeee
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA---------SGAISQT 185 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~---------~~~~~~~ 185 (441)
++.+|+||+.|++|++||+.+++.+..+. .+.+..+.++|. +++++.|+.|++|+.. +++.++.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~------~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~ 119 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA------IISRGPCNRLLLLYPGNQITILDSKTNKVLRE 119 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS------EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc------eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence 56789999999999999999998877665 223444444442 8899999999999665 5554444
Q ss_pred ec-CCCCCeEEEEEec--CCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545 186 LS-GHRDGIMTVEWST--SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ 262 (441)
Q Consensus 186 l~-~h~~~v~~v~fsp--~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (441)
+. +|.+.|.+++|+| +++ +|++++.||+|++||++++++.....
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~-------------------------------- 166 (343)
T 3lrv_A 120 IEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHS-------------------------------- 166 (343)
T ss_dssp EECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEEC--------------------------------
T ss_pred eecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEe--------------------------------
Confidence 44 7889999999999 887 57899999999999998765533221
Q ss_pred cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeee
Q 013545 263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN 342 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~ 342 (441)
..|...|++++|+|+|.+|++|+.|++|++||+++++....
T Consensus 167 --------------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~- 207 (343)
T 3lrv_A 167 --------------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS- 207 (343)
T ss_dssp --------------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE-
T ss_pred --------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc-
Confidence 11334588999999999999999999999999998764311
Q ss_pred eeeEEe-ccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecc---cccceE--EEEEcCCCCeEEEeec-CCcE
Q 013545 343 FETVRL-QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG---HYEYVN--CCCFSSQDQELYTGGN-DRQI 415 (441)
Q Consensus 343 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~g---h~~~v~--~v~fspd~~~l~s~s~-D~~i 415 (441)
.... +......+++++++..+++++.+.+++||+.+++...++.. |..++. +++|+|+|++|++++. |+.|
T Consensus 208 --~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i 285 (343)
T 3lrv_A 208 --RFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSL 285 (343)
T ss_dssp --ECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEE
T ss_pred --EEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcE
Confidence 1222 45667788999999999998888999999998877665544 555555 6999999999999998 9999
Q ss_pred EEeCCCCCC
Q 013545 416 LVWCPSRHI 424 (441)
Q Consensus 416 ~vW~~~~~~ 424 (441)
+||+.....
T Consensus 286 ~v~~~~~~~ 294 (343)
T 3lrv_A 286 TIYKFDKKT 294 (343)
T ss_dssp EEEEECTTT
T ss_pred EEEEEcccc
Confidence 999886543
No 108
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.2e-27 Score=233.96 Aligned_cols=261 Identities=19% Similarity=0.295 Sum_probs=192.8
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
.+|...|++|+|+| ++++|++|+.||+|+|||+.+++.. ....+|...|.++.+ ++.+|
T Consensus 144 ~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~-----------------~~~~~h~~~v~~~s~---~~~~l 202 (420)
T 4gga_A 144 EQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRL-----------------RNMTSHSARVGSLSW---NSYIL 202 (420)
T ss_dssp CSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEE---ETTEE
T ss_pred cCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEE-----------------EEEeCCCCceEEEee---CCCEE
Confidence 36788999999997 6889999999999999999866421 123478888888776 46799
Q ss_pred EEEeCCCcEEEEECCCCe-EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc----eeeeecCCCCCe
Q 013545 120 VTGSYDHYVKVWDTNCTR-VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA----ISQTLSGHRDGI 193 (441)
Q Consensus 120 ~sgs~D~~i~iWd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~----~~~~l~~h~~~v 193 (441)
++|+.|+++++||..... .+..+. +...+..+.+.+.+ .++++++.|+.|++|++.+++ .+.....|...|
T Consensus 203 ~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g---~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V 279 (420)
T 4gga_A 203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG---RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV 279 (420)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCE
T ss_pred EEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC---CeeeeeeccccceEEeeccccccceeeeeecccCCce
Confidence 999999999999987644 344444 34556667777653 489999999999999998875 345677899999
Q ss_pred EEEEEecCCCcEEEEe--ecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 194 MTVEWSTSSEWILVTG--GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~--s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
.+++|+|.+..+++++ +.|++|++||++++.+...+.
T Consensus 280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~----------------------------------------- 318 (420)
T 4gga_A 280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----------------------------------------- 318 (420)
T ss_dssp EEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-----------------------------------------
T ss_pred eeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-----------------------------------------
Confidence 9999999988777664 579999999999876544331
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee--cCCcEEEeeCCCCCceeeeeeeEEec
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG--SDSRIRLWDVESGRNTLVNFETVRLQ 349 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs--~D~~i~~wd~~~~~~~~~~~~~~~~~ 349 (441)
+...+.++.|+|++..+++++ .|++|++||+.+++.. ..+..+
T Consensus 319 -------------------------------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v----~~l~gH 363 (420)
T 4gga_A 319 -------------------------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV----AELKGH 363 (420)
T ss_dssp -------------------------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE----EEECCC
T ss_pred -------------------------------cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE----EEEcCC
Confidence 123578899999999988765 7999999999987642 233445
Q ss_pred cCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEc
Q 013545 350 TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFS 400 (441)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs 400 (441)
...+..++++|++..+++++. +.+++||+.+.........|...+....|.
T Consensus 364 ~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~ 415 (420)
T 4gga_A 364 TSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLI 415 (420)
T ss_dssp SSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------------
T ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccC
Confidence 667778999999999888765 689999998877766666666554444443
No 109
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=5.8e-28 Score=228.25 Aligned_cols=248 Identities=18% Similarity=0.316 Sum_probs=199.2
Q ss_pred cccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe-----EEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCc
Q 013545 98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-----VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQ 171 (441)
Q Consensus 98 ~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~ 171 (441)
+++||++.|++++|+|.++++|||||.|++|++||+.+.+ +...+. +.+.+.++.+++++ .+|++++.|+.
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg---~~l~s~~~d~~ 109 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG---QFALSGSWDGT 109 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC---CEEEEEccccc
Confidence 4679999999999998667899999999999999987643 233333 34678888898854 48999999999
Q ss_pred EEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545 172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG 251 (441)
Q Consensus 172 I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (441)
|++|+............+...+....++|+++. |++++.|+.+++||++.......
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~~~~~d~~~~~~~~~----------------------- 165 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCKYTV----------------------- 165 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEE-----------------------
T ss_pred ceEEeecccceeeeecCCCCceeEEEEeecCcc-ceeecCCCeEEEEEeCCCceEEE-----------------------
Confidence 999999999888888889999999999999875 78999999999999864321110
Q ss_pred ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCC--CEEEEeecCCcEE
Q 013545 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG--MYLLSAGSDSRIR 329 (441)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~D~~i~ 329 (441)
...+|...+..++|++++ .++++++.|++|+
T Consensus 166 -----------------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~ 198 (340)
T 4aow_A 166 -----------------------------------------------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198 (340)
T ss_dssp -----------------------------------------------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred -----------------------------------------------EeccccCcccceEEccCCCCcEEEEEcCCCEEE
Confidence 012466778999999875 5789999999999
Q ss_pred EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEE
Q 013545 330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT 408 (441)
Q Consensus 330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s 408 (441)
+||+.+++.. .....+......++++|++.++++++. +.+++||+.+++.+..+.+| ..|.+++|+|++. +++
T Consensus 199 i~d~~~~~~~----~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~-~~~ 272 (340)
T 4aow_A 199 VWNLANCKLK----TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRY-WLC 272 (340)
T ss_dssp EEETTTTEEE----EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSS-EEE
T ss_pred EEECCCCcee----eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCc-eee
Confidence 9999986532 222234455667889999999888765 68999999999999888865 5799999999864 556
Q ss_pred eecCCcEEEeCCCCCCC
Q 013545 409 GGNDRQILVWCPSRHIS 425 (441)
Q Consensus 409 ~s~D~~i~vW~~~~~~~ 425 (441)
++.|++|++|++.+...
T Consensus 273 ~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 273 AATGPSIKIWDLEGKII 289 (340)
T ss_dssp EEETTEEEEEETTTTEE
T ss_pred ccCCCEEEEEECCCCeE
Confidence 77899999999986643
No 110
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=1.7e-28 Score=240.99 Aligned_cols=254 Identities=16% Similarity=0.148 Sum_probs=189.2
Q ss_pred cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe---cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEE
Q 013545 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwd 176 (441)
.+|...|++++|+|.++.+||+|+.||+|+|||+.++.....+. +.+.|.++.|+|.. ..+|++|+.|+.|++||
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~--~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN--TNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC--TTEEEEECSSSCEEEEE
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC--CCEEEEEeCCCEEEEee
Confidence 36888899999999788899999999999999998776544443 45678899998742 35899999999999999
Q ss_pred CCCCceeeeec--CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545 177 IASGAISQTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS 254 (441)
Q Consensus 177 l~~~~~~~~l~--~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (441)
++++....... .+...+.+++|+|+++ +|++|+.||+|++||++... +
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~-~---------------------------- 243 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKE-L---------------------------- 243 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCB-C----------------------------
T ss_pred ccCCceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcce-e----------------------------
Confidence 98775543333 3445678999999987 57999999999999986311 0
Q ss_pred CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeC
Q 013545 255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDV 333 (441)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~ 333 (441)
..+.+|...|++|+|+|++. +|++|+.|++|++||+
T Consensus 244 -------------------------------------------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~ 280 (435)
T 4e54_B 244 -------------------------------------------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280 (435)
T ss_dssp -------------------------------------------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEET
T ss_pred -------------------------------------------EEEecccceEEeeeecCCCceEEEEecCcceeeEEec
Confidence 01235788899999999986 6889999999999999
Q ss_pred CCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccc------eEEEEEcCCCCeE
Q 013545 334 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY------VNCCCFSSQDQEL 406 (441)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~------v~~v~fspd~~~l 406 (441)
.+.+.... +.....+......+++++++..+++++. +.+++||+.+++....+.+|... +..+.|+|++..+
T Consensus 281 ~~~~~~~~-~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (435)
T 4e54_B 281 RQVRGKAS-FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI 359 (435)
T ss_dssp TTCCSSSC-CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCE
T ss_pred ccccccce-EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEE
Confidence 87653211 1111223345566788999999888765 68999999999888877766532 2344566665555
Q ss_pred EEee------------cCCcEEEeCCCCCCCCCcc
Q 013545 407 YTGG------------NDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 407 ~s~s------------~D~~i~vW~~~~~~~~~~~ 429 (441)
++++ .+++|++|+..++......
T Consensus 360 ~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l 394 (435)
T 4e54_B 360 VVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL 394 (435)
T ss_dssp EEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred EEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence 5443 3468999999987754443
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.2e-28 Score=238.87 Aligned_cols=261 Identities=11% Similarity=0.084 Sum_probs=192.2
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
+.+|...|++++|+|+ | .|+++.+|+.+..... ..+|...|.+++|+| +|.+
T Consensus 48 l~gh~~~v~~V~FsPd-g-------~~~~~~~~~~~~~~~~-------------------~~~~~~~V~~vawSP-dG~~ 99 (588)
T 2j04_A 48 INCNSKNLFHVKEFPL-E-------FENKLDFELAQQNGLL-------------------NSQPVCYPRVCKPSP-IDDW 99 (588)
T ss_dssp CSSBGGGTEEEEEECC-C-------CCCTTTTSCCCSSCSS-------------------TTSCSCCEEEEEECS-SSSC
T ss_pred ecCCCccEEEEEECCC-C-------CcceEEEEeCCCceEe-------------------ecCCCCcEEEEEECC-CCCE
Confidence 3799999999999985 4 5777777765422211 114567899999998 8999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecCC-----eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-------eeee
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPG-----KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-------SQTL 186 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-------~~~l 186 (441)
||+++.|++|++||... ++..+.+.. .+.+++|+|++ .+||+|+.||+|++||+++++. +.++
T Consensus 100 LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG---~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti 174 (588)
T 2j04_A 100 MAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIE---SSIVVGNEDGELQFFSIRKNSENTPEFYFESSI 174 (588)
T ss_dssp EEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSS---SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEE
T ss_pred EEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCC---CEEEEEcCCCEEEEEECCCCccccccceeeeee
Confidence 99999999999999654 555555222 38899999965 4899999999999999999863 5666
Q ss_pred ----cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545 187 ----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ 262 (441)
Q Consensus 187 ----~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (441)
.+|.+.|.+++|+|++ +++++.|++|++||+..+.+...
T Consensus 175 ~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~---------------------------------- 217 (588)
T 2j04_A 175 RLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPV---------------------------------- 217 (588)
T ss_dssp ECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCC----------------------------------
T ss_pred ecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccc----------------------------------
Confidence 7788999999999997 57889999999999865421000
Q ss_pred cccCCCCCccccCcccccCCCCcccccCCCcccccccc-eeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee
Q 013545 263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRA-TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV 341 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~ 341 (441)
.... .+|...|.+|+|+ |..||+++ |++|++||+.+++....
T Consensus 218 ----------------------------------~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~ 260 (588)
T 2j04_A 218 ----------------------------------SRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL 260 (588)
T ss_dssp ----------------------------------EEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE
T ss_pred ----------------------------------eeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE
Confidence 0001 2466779999999 68999887 69999999997653211
Q ss_pred eeeeEEeccCcceEEEe--eCCCcEEEEeCCCceEEEEccC-----------------------CceEeeecccccceEE
Q 013545 342 NFETVRLQTSKPIQLAT--TQDPAVVFVPCMTAVKAFDIWS-----------------------GKTCLTFRGHYEYVNC 396 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~wd~~~-----------------------~~~~~~l~gh~~~v~~ 396 (441)
. ..+......+++ ++++..++++..++.|+|.... ++.+..+.+ ...|.+
T Consensus 261 --~--~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~ 335 (588)
T 2j04_A 261 --K--TGSLENFHIIPLNHEKESTILLMSNKTSYKVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHG 335 (588)
T ss_dssp --E--CSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEE
T ss_pred --E--cCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEE
Confidence 1 124455566788 8888888887754338887522 122334444 667999
Q ss_pred EEEcCCCCeEEEeec
Q 013545 397 CCFSSQDQELYTGGN 411 (441)
Q Consensus 397 v~fspd~~~l~s~s~ 411 (441)
++|||||+.+|+++.
T Consensus 336 va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 336 ISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEECTTSSEEEEEEE
T ss_pred EEECCCCCEEEEEEe
Confidence 999999999998863
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=3.4e-27 Score=231.75 Aligned_cols=235 Identities=23% Similarity=0.394 Sum_probs=189.3
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS 179 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~ 179 (441)
+|...|.++.+ +++++++|+.|++|++||+.+++.+..+. +.+.+.++.+ +..+|++|+.|+.|++||+++
T Consensus 131 ~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 131 ETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-----DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp SSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEESSS
T ss_pred CCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE-----CCCEEEEEcCCCeEEEEECCC
Confidence 57777877765 68899999999999999999999888776 3456777666 235899999999999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259 (441)
Q Consensus 180 ~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (441)
++.+..+.+|...|.++.|+++ .+++|+.||+|++||++++......
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~------------------------------ 249 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLR------------------------------ 249 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEE------------------------------
T ss_pred CcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceee------------------------------
Confidence 9999999999999999999753 5799999999999999764321100
Q ss_pred CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce
Q 013545 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT 339 (441)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~ 339 (441)
....+|...|.+++| ++.+|++|+.|++|++||+.+++..
T Consensus 250 --------------------------------------~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~ 289 (435)
T 1p22_A 250 --------------------------------------RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFV 289 (435)
T ss_dssp --------------------------------------EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE
T ss_pred --------------------------------------eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEE
Confidence 012357788999998 7889999999999999999987632
Q ss_pred eeeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545 340 LVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418 (441)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW 418 (441)
.....+......+.+ ++..+++++ .+.+++||+.+++.+.++.+|...|.+++| ++++|++|+.|++|++|
T Consensus 290 ----~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vw 361 (435)
T 1p22_A 290 ----RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVW 361 (435)
T ss_dssp ----EEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred ----EEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEE
Confidence 222223333344444 456666665 478999999999999999999999999999 78999999999999999
Q ss_pred CCCCCC
Q 013545 419 CPSRHI 424 (441)
Q Consensus 419 ~~~~~~ 424 (441)
++.++.
T Consensus 362 d~~~~~ 367 (435)
T 1p22_A 362 DLVAAL 367 (435)
T ss_dssp EHHHHT
T ss_pred ECCCCC
Confidence 986544
No 113
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=1e-27 Score=229.97 Aligned_cols=255 Identities=10% Similarity=0.129 Sum_probs=186.2
Q ss_pred eecCCCCceeEEEccCCCCcEEEEe-----------eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccce
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSG-----------ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAI 106 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~-----------s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 106 (441)
.+.+|...|.+++++. +.+++| +.|+++|+|++.+... ++.. +..........+...+
T Consensus 68 ~l~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~ 136 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVND-----QLEF---LTSVDFDASTNADDYT 136 (365)
T ss_dssp ECCTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTT-----EEEE---EEEECSSCCCCTTCCE
T ss_pred EccCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCc-----eEEE---eeeeceeecCCcccCE
Confidence 3568999999998863 355554 5678899998765431 1110 0011111123455568
Q ss_pred eEEEEeeCCCCEEE--EEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545 107 SSAIWYPVDTGLFV--TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184 (441)
Q Consensus 107 ~~~~~~~~~~~~l~--sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~ 184 (441)
.+++|+| |+.+++ |++.|++|||||+.+++++..+.+.+.+.+++|+|++ .++++++ ++.+.+|+..+++.+.
T Consensus 137 ~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg---~~l~s~s-~~~~~~~~~~~~~~~~ 211 (365)
T 4h5i_A 137 KLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDG---KVVAYIT-GSSLEVISTVTGSCIA 211 (365)
T ss_dssp EEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTS---SEEEEEC-SSCEEEEETTTCCEEE
T ss_pred EEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCC---ceEEecc-ceeEEEEEeccCccee
Confidence 8888887 788875 5558999999999999999988888889999999865 4788877 5567888887776543
Q ss_pred --eecCCCCCeEEEEEecCCCcEEEEeecCC----cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545 185 --TLSGHRDGIMTVEWSTSSEWILVTGGCDG----AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP 258 (441)
Q Consensus 185 --~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg----~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (441)
...+|...|.+++|+|+++ .+++++.|+ .+++||+.........
T Consensus 212 ~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~----------------------------- 261 (365)
T 4h5i_A 212 RKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLR----------------------------- 261 (365)
T ss_dssp EECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEE-----------------------------
T ss_pred eeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceeccee-----------------------------
Confidence 4567999999999999997 468888887 6888887653211100
Q ss_pred CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545 259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN 338 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~ 338 (441)
.....+|..+|++|+|+|||++||+|+.|++|+|||+.+++.
T Consensus 262 --------------------------------------~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~ 303 (365)
T 4h5i_A 262 --------------------------------------SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM 303 (365)
T ss_dssp --------------------------------------EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred --------------------------------------eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE
Confidence 001245778899999999999999999999999999998763
Q ss_pred eeeeeeeE-EeccCcceEEEeeCCCcEEEEeCC-CceEEEEccC
Q 013545 339 TLVNFETV-RLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWS 380 (441)
Q Consensus 339 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~ 380 (441)
. ... ..+...+..++++||+.++++++. .++|+|++..
T Consensus 304 ~----~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 304 S----KIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp E----EEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred E----EEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 2 121 234566778999999999998765 7999999854
No 114
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-27 Score=229.28 Aligned_cols=212 Identities=18% Similarity=0.304 Sum_probs=173.3
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECC--CCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN--CTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vw 175 (441)
..+|...|.+++|++ ++.+||+|+.|++|++||+. ++..+..+. +.+.+.++.+++.. ...+|++++.|+.|++|
T Consensus 7 ~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 7 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVLIW 84 (379)
T ss_dssp EEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSCEEEE
T ss_pred ecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-CCCEEEEeccCCEEEEE
Confidence 458999999999987 78899999999999999997 444555554 45678888887652 13589999999999999
Q ss_pred ECCCCc--eeeeecCCCCCeEEEEEecC--CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545 176 DIASGA--ISQTLSGHRDGIMTVEWSTS--SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG 251 (441)
Q Consensus 176 dl~~~~--~~~~l~~h~~~v~~v~fsp~--~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (441)
|+++++ .+..+.+|...|.+++|+|+ +. +|++++.|+.|++||++.......
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~----------------------- 140 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSP----------------------- 140 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCE-----------------------
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceee-----------------------
Confidence 999987 67788899999999999999 76 578999999999999975421100
Q ss_pred ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-------------CCCE
Q 013545 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-------------DGMY 318 (441)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-------------dg~~ 318 (441)
.....|...|++++|+| ++.+
T Consensus 141 ----------------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T 3jrp_A 141 ----------------------------------------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 174 (379)
T ss_dssp ----------------------------------------------EEEECCTTCEEEEEECCCC----------CTTCE
T ss_pred ----------------------------------------------EEecCCCCceEEEEEcCccccccccccCCCCCCE
Confidence 01235677899999999 6999
Q ss_pred EEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEE
Q 013545 319 LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC 398 (441)
Q Consensus 319 l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~ 398 (441)
|++++.|++|++||+.+++... .....+.+|..+|.+++
T Consensus 175 l~~~~~dg~i~i~d~~~~~~~~-----------------------------------------~~~~~~~~h~~~v~~~~ 213 (379)
T 3jrp_A 175 FVTGGADNLVKIWKYNSDAQTY-----------------------------------------VLESTLEGHSDWVRDVA 213 (379)
T ss_dssp EEEEETTSCEEEEEEETTTTEE-----------------------------------------EEEEEECCCSSCEEEEE
T ss_pred EEEEeCCCeEEEEEecCCCcce-----------------------------------------eeEEEEecccCcEeEEE
Confidence 9999999999999987654211 11245578999999999
Q ss_pred EcCC---CCeEEEeecCCcEEEeCCCCC
Q 013545 399 FSSQ---DQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 399 fspd---~~~l~s~s~D~~i~vW~~~~~ 423 (441)
|+|+ +++|++++.|++|++|++.++
T Consensus 214 ~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 214 WSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp ECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 9999 899999999999999999875
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=4.6e-26 Score=219.93 Aligned_cols=286 Identities=15% Similarity=0.100 Sum_probs=213.7
Q ss_pred eecCCCCceeEEEccCCCCcEE-EEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYL-LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
.+.+| ..+.+++|+|+ +++| ++++.|++|++||+.+++.. ... ..| ..+.++.++| ++
T Consensus 27 ~~~~~-~~~~~~~~s~d-g~~l~~~~~~d~~i~v~d~~~~~~~------------~~~-----~~~-~~v~~~~~sp-dg 85 (391)
T 1l0q_A 27 TIPVG-SNPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVI------------ATV-----PAG-SSPQGVAVSP-DG 85 (391)
T ss_dssp EEECS-SSEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEE------------EEE-----ECS-SSEEEEEECT-TS
T ss_pred EeecC-CCcceEEECCC-CCEEEEECCCCCeEEEEECCCCeEE------------EEE-----ECC-CCccceEECC-CC
Confidence 34455 45899999975 5554 88889999999999765421 011 112 2788888887 67
Q ss_pred CEE-EEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545 117 GLF-VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (441)
Q Consensus 117 ~~l-~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~ 195 (441)
+++ ++++.|++|++||+.+++.+..+.....+..+.+++++ ..++++++.++.|++||+.+++.+..+..| ..+.+
T Consensus 86 ~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~ 162 (391)
T 1l0q_A 86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDG--KKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKG 162 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEE
T ss_pred CEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcce
Confidence 666 56667899999999999998888877778888888864 345578888999999999999988888766 45699
Q ss_pred EEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
+.|+|+++.++++++.|+.|++||++++++...+
T Consensus 163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~---------------------------------------------- 196 (391)
T 1l0q_A 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV---------------------------------------------- 196 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----------------------------------------------
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE----------------------------------------------
Confidence 9999999877788889999999999876443322
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee---cCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG---SDSRIRLWDVESGRNTLVNFETVRLQTSK 352 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs---~D~~i~~wd~~~~~~~~~~~~~~~~~~~~ 352 (441)
.+...+.+++|+|++++|++++ .|++|++||+.+++.. ..... ...
T Consensus 197 --------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~----~~~~~-~~~ 245 (391)
T 1l0q_A 197 --------------------------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT----ARIPV-GPD 245 (391)
T ss_dssp --------------------------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE----EEEEC-CSS
T ss_pred --------------------------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE----EEEec-CCC
Confidence 1223578899999999998887 6899999999876532 12222 334
Q ss_pred ceEEEeeCCCcEEEEe-C-CCceEEEEccCCceEeeecccccceE---EEEEcC------------CC----------Ce
Q 013545 353 PIQLATTQDPAVVFVP-C-MTAVKAFDIWSGKTCLTFRGHYEYVN---CCCFSS------------QD----------QE 405 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~-~-~~~~~~wd~~~~~~~~~l~gh~~~v~---~v~fsp------------d~----------~~ 405 (441)
+..+++++++..+++. . ...+++||+.+++...++..|..+.. .+.+.| +. ..
T Consensus 246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~ 325 (391)
T 1l0q_A 246 PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQ 325 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEE
T ss_pred ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEE
Confidence 5678899999877554 3 36899999999999998888766532 123332 21 33
Q ss_pred EEEeecCCcEEEeCCCCCC
Q 013545 406 LYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 406 l~s~s~D~~i~vW~~~~~~ 424 (441)
+.+.+.|.++++|+...+.
T Consensus 326 ~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 326 FTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp EEECCBSCSEEEEECSSSC
T ss_pred EEeCCCCceEEEEECCCCc
Confidence 6677789999999997665
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=1.2e-26 Score=221.26 Aligned_cols=250 Identities=18% Similarity=0.256 Sum_probs=186.0
Q ss_pred ccCcccceeEEEEeeCC--CCEEEEEeCCCcEEEEECCC-CeEE-EEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545 99 EHGHKYAISSAIWYPVD--TGLFVTGSYDHYVKVWDTNC-TRVV-MNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~--~~~l~sgs~D~~i~iWd~~~-~~~~-~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~ 173 (441)
..+|...|.++.|+|.. +.+|++|+.|++|++||+.+ +..+ ..+. +.+.+.++.++++. .+|++++.|+.|+
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG---SKVFTASCDKTAK 111 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS---SEEEEEETTSEEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC---CEEEEEcCCCcEE
Confidence 45899999999999854 68999999999999999987 4443 3443 56778999999853 4889999999999
Q ss_pred EEECCCCceeeeecCCCCCeEEEEE--ecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545 174 LCDIASGAISQTLSGHRDGIMTVEW--STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG 251 (441)
Q Consensus 174 vwdl~~~~~~~~l~~h~~~v~~v~f--sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (441)
+||+++++.+. +.+|...|.++.| +|++. +|++++.||.|++||++++++...+.
T Consensus 112 iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------- 168 (368)
T 3mmy_A 112 MWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQ--------------------- 168 (368)
T ss_dssp EEETTTTEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEE---------------------
T ss_pred EEEcCCCCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEe---------------------
Confidence 99999998765 5679999999999 77776 57899999999999998764433221
Q ss_pred ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe
Q 013545 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331 (441)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w 331 (441)
....+.++.+. ...+++++.|+.+++|
T Consensus 169 ---------------------------------------------------~~~~~~~~~~~--~~~~~~~~~~~~i~~~ 195 (368)
T 3mmy_A 169 ---------------------------------------------------LPERCYCADVI--YPMAVVATAERGLIVY 195 (368)
T ss_dssp ---------------------------------------------------CSSCEEEEEEE--TTEEEEEEGGGCEEEE
T ss_pred ---------------------------------------------------cCCCceEEEec--CCeeEEEeCCCcEEEE
Confidence 11234455555 4578889999999999
Q ss_pred eCCCCCceeeeeeeEEeccCcceEEEeeCCCc----EEEEe-CCCceEEEEccCC---ceEeeeccccc-----------
Q 013545 332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPA----VVFVP-CMTAVKAFDIWSG---KTCLTFRGHYE----------- 392 (441)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~wd~~~~---~~~~~l~gh~~----------- 392 (441)
++............ ........+.+.++.. .++++ ..+.+++|++... +....+.+|..
T Consensus 196 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (368)
T 3mmy_A 196 QLENQPSEFRRIES--PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDI 273 (368)
T ss_dssp ECSSSCEEEEECCC--SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEE
T ss_pred Eeccccchhhhccc--cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccc
Confidence 99875432211110 0111122233333222 14444 4478999999887 55677888877
Q ss_pred -ceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545 393 -YVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 393 -~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~ 429 (441)
+|.+++|+|++++|++|+.|+.|++|++.++......
T Consensus 274 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (368)
T 3mmy_A 274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS 311 (368)
T ss_dssp CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred cceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence 7999999999999999999999999999987654433
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=4.5e-27 Score=227.80 Aligned_cols=265 Identities=11% Similarity=0.115 Sum_probs=172.1
Q ss_pred CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee-------C
Q 013545 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-------V 114 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-------~ 114 (441)
|.+.+....+ +.++++|++|+.|++|+|||+.++.... ........||++.|.++.|+| .
T Consensus 88 ~~~~~~~~~~-~~~~~~las~~~d~~v~lw~~~~~~~~~------------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~ 154 (393)
T 4gq1_A 88 HDGDGNVNSS-PVYSLFLACVCQDNTVRLIITKNETIIT------------QHVLGGKSGHHNFVNDIDIADVYSADNRL 154 (393)
T ss_dssp ---------C-CEEEEEEEEEETTSCEEEEEEETTEEEE------------EEEECTTTSCSSCEEEEEEEEEECTTCSE
T ss_pred cCCCcceeec-CCCCCEEEEEeCCCcEEEEECCCCccce------------eeeecccCCCCCceEEEEEccccccccCC
Confidence 4444444444 3467789999999999999987653210 001134569999999999986 3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEE-EEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee--------
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVV-MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-------- 185 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~-------- 185 (441)
|+.+|||||.|++|||||+.++.++ ..+.+.+.+.+++|+|.. ..+|++|+.|+.|++||+.+++....
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~ 232 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSN--PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK 232 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTE--EEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCC--CceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence 6789999999999999999877654 455677889999999853 35799999999999999988754321
Q ss_pred -----------------ecCCCCCeEEEEEe-cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccc
Q 013545 186 -----------------LSGHRDGIMTVEWS-TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKS 247 (441)
Q Consensus 186 -----------------l~~h~~~v~~v~fs-p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (441)
..+|...|.++.|+ |+++ .+++++.|+++++||+..+.....+.......
T Consensus 233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~----------- 300 (393)
T 4gq1_A 233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKL----------- 300 (393)
T ss_dssp CCCSEEEESGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC---------------------------
T ss_pred cceEEecccccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCcc-----------
Confidence 24688889999997 6776 57899999999999998654332221110000
Q ss_pred cccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc--CCCEEEEeecC
Q 013545 248 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--DGMYLLSAGSD 325 (441)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--dg~~l~sgs~D 325 (441)
..+...+..+ ...+........|+| ++.++++|+.|
T Consensus 301 ---------------------~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~sgs~D 338 (393)
T 4gq1_A 301 ---------------------GPKNLLPNVQ---------------------GISLFPSLLGACPHPRYMDYFATAHSQH 338 (393)
T ss_dssp ------------------------CCSCSEE---------------------EECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred ---------------------ccEEEccccc---------------------cccccCcceeEEEccCCCCEEEEEECCC
Confidence 0000000000 000111222334444 45577889999
Q ss_pred CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEcc
Q 013545 326 SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW 379 (441)
Q Consensus 326 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~ 379 (441)
++|++||+.+++.... ...+......++++||+..+++++.+++.+|.++
T Consensus 339 g~V~lwd~~~~~~~~~----~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 339 GLIQLINTYEKDSNSI----PIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp TEEEEEETTCTTCCEE----EEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred CEEEEEECCCCcEEEE----ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 9999999998764322 2223455667999999999999988899888774
No 118
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=7.5e-27 Score=220.39 Aligned_cols=269 Identities=17% Similarity=0.213 Sum_probs=176.1
Q ss_pred eeecCCCCceeEEEccCC-CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 37 EIVSPHKGSINSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 37 ~~~~~H~~~V~~l~~s~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
..+.+|.+.|++++|+|. ++++|++|+.||+|++||+.++....... ....+ ....+|...|.++.|+|..
T Consensus 51 ~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~---~~~~~-----~~~~~~~~~v~~~~~~~~~ 122 (351)
T 3f3f_A 51 DSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR---RWNKL-----CTLNDSKGSLYSVKFAPAH 122 (351)
T ss_dssp EEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC---SEEEE-----EEECCCSSCEEEEEECCGG
T ss_pred ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc---Cccee-----eeecccCCceeEEEEcCCC
Confidence 345689999999999974 47899999999999999997654311000 00111 1234799999999998732
Q ss_pred -CCEEEEEeCCCcEEEEECCCCeEEEEEe--------------cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545 116 -TGLFVTGSYDHYVKVWDTNCTRVVMNFK--------------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180 (441)
Q Consensus 116 -~~~l~sgs~D~~i~iWd~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~ 180 (441)
+.+|++++.|++|++||+.+++.+..+. ....+.++.++|...+..++++++.++.+.+|+...+
T Consensus 123 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 202 (351)
T 3f3f_A 123 LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG 202 (351)
T ss_dssp GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS
T ss_pred CCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC
Confidence 7899999999999999998776433221 2345677888887555678999999999999998887
Q ss_pred ce--eeeecCCCCCeEEEEEecCCC---cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545 181 AI--SQTLSGHRDGIMTVEWSTSSE---WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS 255 (441)
Q Consensus 181 ~~--~~~l~~h~~~v~~v~fsp~~~---~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (441)
+. +..+.+|...|.+++|+|++. .+|++++.||+|++||++.+.+............ .
T Consensus 203 ~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~-------- 265 (351)
T 3f3f_A 203 KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSN---------M-------- 265 (351)
T ss_dssp CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------
T ss_pred ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccccee---------c--------
Confidence 65 677889999999999999972 3689999999999999986543221111000000 0
Q ss_pred cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545 256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~ 335 (441)
............+... ......... .............+|.+.|++++|+|++++|++|+.|++|++||+.+
T Consensus 266 ~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 266 FDNSADVDMDAQGRSD-SNTEEKAEL-------QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp ---------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cCCCcccccccccccc-cccceeeee-------cccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 0000000000000000 000000000 00000011122456888999999999999999999999999999998
Q ss_pred CCc
Q 013545 336 GRN 338 (441)
Q Consensus 336 ~~~ 338 (441)
++.
T Consensus 338 ~~~ 340 (351)
T 3f3f_A 338 SNE 340 (351)
T ss_dssp TSC
T ss_pred Ccc
Confidence 653
No 119
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=5.6e-26 Score=219.84 Aligned_cols=287 Identities=14% Similarity=0.128 Sum_probs=183.2
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC--CCCE
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV--DTGL 118 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~~ 118 (441)
+|.+.|++++|+|.++++|++++.||+|++||+.++... .. ..|...+.++.+.+. ++.+
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------~~------~~~~~~~~~~~~~~~~~~~~~ 158 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA------------DV------FNFEETVYSHHMSPVSTKHCL 158 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE------------EE------EECSSCEEEEEECSSCSSCCE
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc------------ee------ccCCCceeeeEeecCCCCCcE
Confidence 599999999999867789999999999999999865421 11 124556777777663 4459
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc-eeeee----------
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTL---------- 186 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~-~~~~l---------- 186 (441)
+++++.|+.|++||+.+++.+..+. +.+.+.++.+++.. ..++++++.|+.|++||++++. .+..+
T Consensus 159 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 236 (408)
T 4a11_B 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY--DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQA 236 (408)
T ss_dssp EEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC--TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred EEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC--CcEEEEEcCCCcEEEEECCCCCccccccccccccccee
Confidence 9999999999999999988877776 45678889998864 3478999999999999998765 33333
Q ss_pred -----cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCC
Q 013545 187 -----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAP 261 (441)
Q Consensus 187 -----~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (441)
.+|...|.+++|+|+++ .|++++.||.|++||++++.....+.....
T Consensus 237 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--------------------------- 288 (408)
T 4a11_B 237 VESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVC--------------------------- 288 (408)
T ss_dssp TTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCCCCC---------------------------
T ss_pred eccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceecccccc---------------------------
Confidence 67999999999999987 478999999999999987543211100000
Q ss_pred CcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee
Q 013545 262 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV 341 (441)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~ 341 (441)
......+........+..+++++.|++|++||+.+++..
T Consensus 289 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-- 327 (408)
T 4a11_B 289 ---------------------------------------NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI-- 327 (408)
T ss_dssp ---------------------------------------CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE--
T ss_pred ---------------------------------------ccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce--
Confidence 000001111122234556777788999999999987642
Q ss_pred eeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCC-CCeEEEeecCCcEEEeC
Q 013545 342 NFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ-DQELYTGGNDRQILVWC 419 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd-~~~l~s~s~D~~i~vW~ 419 (441)
.....+......+++++++..+++++. +.+++|++.+++.+.....+... ..++|. ...+.+++.|+.+++|+
T Consensus 328 --~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 328 --TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp --EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------
T ss_pred --eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecC
Confidence 222334456677899999998888765 68999999998877655444322 334443 33455778899999997
Q ss_pred CC
Q 013545 420 PS 421 (441)
Q Consensus 420 ~~ 421 (441)
.+
T Consensus 403 ~~ 404 (408)
T 4a11_B 403 HP 404 (408)
T ss_dssp --
T ss_pred Cc
Confidence 65
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=6.4e-26 Score=216.59 Aligned_cols=239 Identities=10% Similarity=0.059 Sum_probs=176.4
Q ss_pred cCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC
Q 013545 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS 179 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~ 179 (441)
.+|...|.+++|+| |+.+|++|+.| .+++||+.++..+......+ +..+.+.+. .+.++++++.|+.|++||+++
T Consensus 16 ~~h~~~V~~v~fs~-dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQ-DQSCLILSTLK-SFEIYNVHPVAHIMSQEMRH-LSKVRMLHR--TNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp ---CCCCCEEEECT-TSSEEEEECSS-EEEEEEETTEEEEEEEECSC-CCEEEECTT--SSEEEEECSSTTEEEEEETTT
T ss_pred ccCCCceEEEEECC-CCCEEEEEcCC-EEEEEecCCcceeeeeecCC-eEEEEEcCC--CCEEEEEECCccEEEEEECCC
Confidence 47999999999987 78899988877 57999998877665544432 444555543 234556778889999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC-ceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP 258 (441)
Q Consensus 180 ~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (441)
++.+..+. |...|.++.|+++. + +.+ .|+.|++||++++ +++..+
T Consensus 91 ~~~~~~~~-~~~~v~~v~~~~~~--~-~~~-~~~~i~i~d~~~~~~~~~~~----------------------------- 136 (355)
T 3vu4_A 91 KQDVSRIK-VDAPVKDLFLSREF--I-VVS-YGDVISVFKFGNPWKRITDD----------------------------- 136 (355)
T ss_dssp TEEEEEEE-CSSCEEEEEECSSE--E-EEE-ETTEEEEEESSTTCCBSSCC-----------------------------
T ss_pred CcEEEEEE-CCCceEEEEEcCCE--E-EEE-EcCEEEEEECCCCceeeEEe-----------------------------
Confidence 99988886 67799999999863 3 333 4889999998754 211100
Q ss_pred CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEE--eecCCcEEEeeCCCC
Q 013545 259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS--AGSDSRIRLWDVESG 336 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s--gs~D~~i~~wd~~~~ 336 (441)
.. +...+++++ .+++. |+.||+|++||+.++
T Consensus 137 ------------------------------------------~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~ 169 (355)
T 3vu4_A 137 ------------------------------------------IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSS 169 (355)
T ss_dssp ------------------------------------------EE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-
T ss_pred ------------------------------------------cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCC
Confidence 00 233456666 55555 789999999999875
Q ss_pred Ccee-----------ee-eeeEEeccCcceEEEeeCCCcEEEEeCC-Cc-eEEEEccCCceEeeec-c-cccceEEEEEc
Q 013545 337 RNTL-----------VN-FETVRLQTSKPIQLATTQDPAVVFVPCM-TA-VKAFDIWSGKTCLTFR-G-HYEYVNCCCFS 400 (441)
Q Consensus 337 ~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~wd~~~~~~~~~l~-g-h~~~v~~v~fs 400 (441)
+... .. ......+......+++++++.++++++. +. +++||+.+++.+.++. | |...|.+++|+
T Consensus 170 ~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s 249 (355)
T 3vu4_A 170 GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWS 249 (355)
T ss_dssp -----------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEEC
T ss_pred CccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEEC
Confidence 4100 00 1223344566778999999999988866 56 9999999999999998 6 99999999999
Q ss_pred CCCCeEEEeecCCcEEEeCCCCCC
Q 013545 401 SQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 401 pd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
|||++|++++.|++|+||++..+.
T Consensus 250 ~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 250 TDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TTSCEEEEEETTCEEEEEESSCCS
T ss_pred CCCCEEEEEECCCEEEEEEccCCC
Confidence 999999999999999999997653
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.6e-26 Score=213.51 Aligned_cols=212 Identities=11% Similarity=0.123 Sum_probs=140.1
Q ss_pred CCCceeEEEccCCC----CcEEEEeeCCCcEEEEECCCCcccCC--CCceecccee--EEeec-----ccccCcccceeE
Q 013545 42 HKGSINSLQVDLTE----ERYLLSGASDSSVAVYDVQRATDYEG--GGHIAKHRSV--FVVDK-----QHEHGHKYAISS 108 (441)
Q Consensus 42 H~~~V~~l~~s~~~----~~~l~s~s~Dg~i~iwd~~~~~~~~~--~~~~~~~~~~--~~~~~-----~~~~~h~~~V~~ 108 (441)
|.+.|++|+|+| + ++++++++.+ +++|++.+++.... .++ ...+ +.+.. ....+|...+..
T Consensus 110 ~~~~v~sla~sp-d~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~---d~~V~~~~~s~dG~~~~s~~~~~~~v~~ 183 (356)
T 2w18_A 110 EIREIRALFCSS-DDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLS---DQQVEVMTFAEDGGGKENQFLMPPEETI 183 (356)
T ss_dssp SEEEEEEECC-------CCEEEEEEEEE--EEEEEETTTEEEEEESSST---TCEEEEEEECTTSCEEEEEEECCCSSCE
T ss_pred cccceEEEEECC-CccccccEEEeCCCe--EEEEecCCCcEEEecccCC---CCcEEEEEECCCCceeeeeccCCCceee
Confidence 345788888886 5 5677777642 45555543321100 000 0001 11100 012367777877
Q ss_pred EEEee--CCCCEEEEEeCCCcEEEEECCCCeEEEEEecC----CeeEEEeeccCCCC---------ccEEEEEeCCCcEE
Q 013545 109 AIWYP--VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP----GKVYRTAMSPLAAS---------HMLIAAGTEDVQVR 173 (441)
Q Consensus 109 ~~~~~--~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~---------~~~las~s~d~~I~ 173 (441)
+.|++ .++++|||||.|++|||||+++++++.++..+ ..+..++|+|++.. ...+++|+.|++|+
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk 263 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI 263 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence 77776 35789999999999999999999999888632 23455577775420 01257889999999
Q ss_pred EEECCCCceeeee-----cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccc
Q 013545 174 LCDIASGAISQTL-----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSL 248 (441)
Q Consensus 174 vwdl~~~~~~~~l-----~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (441)
+||..+++.+..+ .+|...+.+..++ +. ++++++.|++|||||+.+++++.+++
T Consensus 264 lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL~------------------ 322 (356)
T 2w18_A 264 VINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQCTALLP------------------ 322 (356)
T ss_dssp EEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSEEEEEC------------------
T ss_pred EEECCCCEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcEEEEec------------------
Confidence 9999999887665 4787776655555 44 68999999999999999987766552
Q ss_pred ccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccC-eEEEEEccCCCEEEEeecCCc
Q 013545 249 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSAGSDSR 327 (441)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sgs~D~~ 327 (441)
+|... +..++|||||++|+||+.|++
T Consensus 323 -----------------------------------------------------gH~~~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 323 -----------------------------------------------------PVSDQHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp -----------------------------------------------------CC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred -----------------------------------------------------CCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 34443 346899999999999999999
Q ss_pred EEEeeC
Q 013545 328 IRLWDV 333 (441)
Q Consensus 328 i~~wd~ 333 (441)
|||||+
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999985
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=5.7e-26 Score=222.68 Aligned_cols=229 Identities=20% Similarity=0.378 Sum_probs=175.1
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+.+|...|++|+|+|.+..+|++|+.||+|+|||+..+.... .. ........+|...|.++.|+|.++.
T Consensus 176 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---------~~-~~~~~~~~~h~~~v~~v~~~p~~~~ 245 (430)
T 2xyi_A 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH---------RV-IDAKNIFTGHTAVVEDVAWHLLHES 245 (430)
T ss_dssp EEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGG---------GE-EECSEEECCCSSCEEEEEECSSCTT
T ss_pred EecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCC---------ce-eccceeecCCCCCEeeeEEeCCCCC
Confidence 4568999999999997544499999999999999997643210 00 0011223479999999999987788
Q ss_pred EEEEEeCCCcEEEEECCCC---eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-CceeeeecCCCCC
Q 013545 118 LFVTGSYDHYVKVWDTNCT---RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGHRDG 192 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~l~~h~~~ 192 (441)
+|++++.|++|++||++++ ..+..+. +.+.+.++.+++.. ..++++|+.|+.|++||+.+ +.++..+.+|...
T Consensus 246 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~ 323 (430)
T 2xyi_A 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS--EFILATGSADKTVALWDLRNLKLKLHSFESHKDE 323 (430)
T ss_dssp EEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSC--TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC
T ss_pred EEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCC--CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC
Confidence 9999999999999999876 4555553 45678889998864 35899999999999999998 5678889999999
Q ss_pred eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (441)
|.++.|+|+++.+|++++.|+.|++||++........+. .
T Consensus 324 v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------~--------------------------- 363 (430)
T 2xyi_A 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED-------------A--------------------------- 363 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH-------------H---------------------------
T ss_pred EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc-------------c---------------------------
Confidence 999999999988899999999999999975321100000 0
Q ss_pred ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCC
Q 013545 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~ 335 (441)
..+.........+|...|++++|+|++. +|++++.|++|++|++..
T Consensus 364 -----------------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 364 -----------------EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp -----------------HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred -----------------ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 0000000111346788899999999999 899999999999999875
No 123
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=5.8e-25 Score=205.58 Aligned_cols=246 Identities=20% Similarity=0.317 Sum_probs=186.1
Q ss_pred eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce
Q 013545 106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182 (441)
Q Consensus 106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~ 182 (441)
.+++.|++ + ++||+| .|++|+|||+.+++++..+... ..+.++.+++++ .+|++|+.|+.|++||+++++.
T Consensus 28 ~~~l~WS~-~-~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~---~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSS-G-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG---NYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECT-T-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECC-C-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC---CEEEEEECCCcEEEeecCCcee
Confidence 35678875 3 466665 5999999999999998887653 358888898864 4899999999999999999999
Q ss_pred eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ 262 (441)
Q Consensus 183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (441)
+..+.+|...+.++.+.+ . ++++++.++.+++|+........
T Consensus 102 ~~~~~~h~~~~~~~~~~~--~-~l~s~~~~~~~~~~~~~~~~~~~----------------------------------- 143 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHV----------------------------------- 143 (318)
T ss_dssp EEEEECCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEE-----------------------------------
T ss_pred EEEecCccceEEEeecCC--C-EEEEEecCCceEeeecCCCceeE-----------------------------------
Confidence 999999999998877654 3 68999999999999976432100
Q ss_pred cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeee
Q 013545 263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN 342 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~ 342 (441)
....+|...+..+.+++++.+|++++.|++|++||+.+++.....
T Consensus 144 -----------------------------------~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 188 (318)
T 4ggc_A 144 -----------------------------------ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 188 (318)
T ss_dssp -----------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC
T ss_pred -----------------------------------EEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc
Confidence 012457788999999999999999999999999999986543222
Q ss_pred eeeEEeccCcceEEEeeCCCc-EEEEeC---CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEee--cCCcEE
Q 013545 343 FETVRLQTSKPIQLATTQDPA-VVFVPC---MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG--NDRQIL 416 (441)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s--~D~~i~ 416 (441)
.............+.+.++.. .+..++ ...+++||.......... .|...+..+.|+|+++.+++++ .|++|+
T Consensus 189 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~ 267 (318)
T 4ggc_A 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLV 267 (318)
T ss_dssp SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEE
Confidence 222222233444556666544 333322 257999999888776654 4677899999999999988654 799999
Q ss_pred EeCCCCCCCCCccCC
Q 013545 417 VWCPSRHISDGVDAG 431 (441)
Q Consensus 417 vW~~~~~~~~~~~~~ 431 (441)
||++.++.......|
T Consensus 268 iwd~~~~~~~~~l~g 282 (318)
T 4ggc_A 268 IWKYPTMAKVAELKG 282 (318)
T ss_dssp EEETTTCCEEEEECC
T ss_pred EEECCCCcEEEEEcC
Confidence 999998876555544
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-25 Score=220.79 Aligned_cols=241 Identities=11% Similarity=0.044 Sum_probs=187.4
Q ss_pred cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe---EEEEEecC-----------------------------------
Q 013545 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR---VVMNFKMP----------------------------------- 145 (441)
Q Consensus 104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~---~~~~~~~~----------------------------------- 145 (441)
.++.++.+++ ++++|+++ .++.|++||+.+++ .+..+...
T Consensus 5 ~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3577788776 67766655 57899999999988 55555422
Q ss_pred --------------------CeeEEEeeccCCCCccEEEEEeCCCcEEEEECC--CCceeeeec--CCCCCeEEEEEecC
Q 013545 146 --------------------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA--SGAISQTLS--GHRDGIMTVEWSTS 201 (441)
Q Consensus 146 --------------------~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~--~~~~~~~l~--~h~~~v~~v~fsp~ 201 (441)
+.+.++.+++++ ..++++++.|+.|++||+. +++.+..+. .|...|.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE--SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -----------------CCCCCEEEEEECTTS--SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCC--CEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 137778888764 2345899999999999999 888888876 67789999999999
Q ss_pred CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
++ .|++++.||.|++||+..+.....
T Consensus 161 ~~-~l~~~~~~g~v~~~~~~~~~~~~~----------------------------------------------------- 186 (450)
T 2vdu_B 161 DT-TVIIADKFGDVYSIDINSIPEEKF----------------------------------------------------- 186 (450)
T ss_dssp SS-EEEEEETTSEEEEEETTSCCCSSC-----------------------------------------------------
T ss_pred CC-EEEEEeCCCcEEEEecCCcccccc-----------------------------------------------------
Confidence 97 578999999999999875421100
Q ss_pred CCCcccccCCCcccccccceeeccCeEEEEEccC---CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEe
Q 013545 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED---GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT 358 (441)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d---g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (441)
......+|.+.|++|+|+|+ +.+|++|+.|++|++||+.+++.... ....+...+..+++
T Consensus 187 --------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~~h~~~v~~~~~ 249 (450)
T 2vdu_B 187 --------------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK---WLFGHKHFVSSICC 249 (450)
T ss_dssp --------------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE---ECCCCSSCEEEEEE
T ss_pred --------------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee---eecCCCCceEEEEE
Confidence 00013468889999999999 99999999999999999988764221 01123455667888
Q ss_pred eCCCcEEEEeCC-CceEEEEccCCceEeeeccc-------------------------ccceEEEEEcCCCCeEEEee-c
Q 013545 359 TQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH-------------------------YEYVNCCCFSSQDQELYTGG-N 411 (441)
Q Consensus 359 ~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh-------------------------~~~v~~v~fspd~~~l~s~s-~ 411 (441)
+ ++.++++++. ..+++||+.+++.+..+..| ...|.+++|+|++++|++++ .
T Consensus 250 s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~ 328 (450)
T 2vdu_B 250 G-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA 328 (450)
T ss_dssp C-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred C-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence 8 8888888765 68999999999988887643 35699999999999999998 8
Q ss_pred CCcEEEeCC
Q 013545 412 DRQILVWCP 420 (441)
Q Consensus 412 D~~i~vW~~ 420 (441)
|+.|+||++
T Consensus 329 d~~i~iw~~ 337 (450)
T 2vdu_B 329 TKCIIILEM 337 (450)
T ss_dssp CSEEEEEEE
T ss_pred CCeEEEEEe
Confidence 999999999
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.9e-25 Score=217.88 Aligned_cols=289 Identities=10% Similarity=0.054 Sum_probs=205.7
Q ss_pred CCCceeEEEccCCCCcEEEEee----CCC----cEEEEEC--CCCcccCCCCceeccceeEEeecccccCcccceeEEEE
Q 013545 42 HKGSINSLQVDLTEERYLLSGA----SDS----SVAVYDV--QRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW 111 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s----~Dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 111 (441)
+...|+...|++.+.+++++|+ .|| +|+|||+ .++.... .....+|...+..+++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA---------------QNSYKVNKQWLRYAGH 125 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE---------------EEEEEECGGGHHHHHH
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe---------------eeEEEcChhHHHHHHH
Confidence 4467888899877667888887 568 9999999 7654210 0011234444433332
Q ss_pred eeC-------------CCCEEEEEeCC------CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC--
Q 013545 112 YPV-------------DTGLFVTGSYD------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-- 170 (441)
Q Consensus 112 ~~~-------------~~~~l~sgs~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~-- 170 (441)
.+. .+..++.++.+ ++|++||+..+.......+.+.+..+.++|++. .|++++.++
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~---~la~~s~~~~~ 202 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS---KLAYVTFESGR 202 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSS---EEEEEECTTSS
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCC---EEEEEEecCCC
Confidence 210 14566666654 799999998655443344567788999998653 677777764
Q ss_pred -cEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCc--EEEEEcCCCceeeEeccCCccccCCCCcccccc
Q 013545 171 -QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKS 247 (441)
Q Consensus 171 -~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~--I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (441)
.|++||+++++.. .+..|...+.+++|+|+++.++++++.|+. |++||++++.+..
T Consensus 203 ~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~-------------------- 261 (415)
T 2hqs_A 203 SALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-------------------- 261 (415)
T ss_dssp CEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------
T ss_pred cEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEe--------------------
Confidence 9999999999865 567788899999999999876657777665 8999987643211
Q ss_pred cccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-CC
Q 013545 248 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS 326 (441)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~ 326 (441)
...|...+.+++|+|||++|+.++. ++
T Consensus 262 ----------------------------------------------------l~~~~~~~~~~~~spdg~~l~~~s~~~g 289 (415)
T 2hqs_A 262 ----------------------------------------------------VTDGRSNNTEPTWFPDSQNLAFTSDQAG 289 (415)
T ss_dssp ----------------------------------------------------CCCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred ----------------------------------------------------CcCCCCcccceEECCCCCEEEEEECCCC
Confidence 1234456889999999999998876 44
Q ss_pred --cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCceEeeecccccceEEEEEc
Q 013545 327 --RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFS 400 (441)
Q Consensus 327 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs 400 (441)
+|++||+.+++... +.........++++|++..++..+. ..+.+||+.+++. ..+..|. .+.+++|+
T Consensus 290 ~~~i~~~d~~~~~~~~-----l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~s 362 (415)
T 2hqs_A 290 RPQVYKVNINGGAPQR-----ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLA 362 (415)
T ss_dssp SCEEEEEETTSSCCEE-----CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEEC
T ss_pred CcEEEEEECCCCCEEE-----EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEc
Confidence 67777988765321 1112234456789999998877653 4799999998877 4566665 89999999
Q ss_pred CCCCeEEEeecCC---cEEEeCCCCCCCCCc
Q 013545 401 SQDQELYTGGNDR---QILVWCPSRHISDGV 428 (441)
Q Consensus 401 pd~~~l~s~s~D~---~i~vW~~~~~~~~~~ 428 (441)
|||++|++++.|+ .|.+|++.+.....+
T Consensus 363 pdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l 393 (415)
T 2hqs_A 363 PNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 393 (415)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred CCCCEEEEEEcCCCccEEEEEECCCCcEEEe
Confidence 9999999988887 799999986654433
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=4.5e-25 Score=215.93 Aligned_cols=241 Identities=15% Similarity=0.164 Sum_probs=189.7
Q ss_pred ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec------CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC
Q 013545 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~ 178 (441)
.+.++.++| ++.++++++.|++|++||+.+++.+..... .+.+..+.+++. ..++++++.|+.|++||++
T Consensus 124 ~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d~~v~~~d~~ 199 (433)
T 3bws_A 124 QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH---NELWVSQMQANAVHVFDLK 199 (433)
T ss_dssp CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG---TEEEEEEGGGTEEEEEETT
T ss_pred CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC---CEEEEEECCCCEEEEEECC
Confidence 355778887 777888999999999999999988764332 345777777664 4588999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545 179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP 258 (441)
Q Consensus 179 ~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (441)
+++.+..+..|...+.+++|+|+++.++++++.|+.|++||+++++....+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~---------------------------- 251 (433)
T 3bws_A 200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD---------------------------- 251 (433)
T ss_dssp TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC----------------------------
T ss_pred CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec----------------------------
Confidence 9999999999999999999999998776777789999999998764432210
Q ss_pred CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee--------cCCcEEE
Q 013545 259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG--------SDSRIRL 330 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs--------~D~~i~~ 330 (441)
+...+.+++|+|+|++|++++ .|++|++
T Consensus 252 --------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~ 287 (433)
T 3bws_A 252 --------------------------------------------KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGI 287 (433)
T ss_dssp --------------------------------------------CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEE
T ss_pred --------------------------------------------CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEE
Confidence 112378899999999999888 5889999
Q ss_pred eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe--CCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEE
Q 013545 331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP--CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT 408 (441)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s 408 (441)
||+.+++... .. .....+..+++++++..+++. ....+++||+.+++....+. |...+.+++|+|||++|++
T Consensus 288 ~d~~~~~~~~----~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~ 361 (433)
T 3bws_A 288 YSMDKEKLID----TI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYV 361 (433)
T ss_dssp EETTTTEEEE----EE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEE
T ss_pred EECCCCcEEe----ec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEE
Confidence 9998775321 11 112345678889998766554 34689999999998888776 6778999999999999888
Q ss_pred eec---------------CCcEEEeCCCCCCCCC
Q 013545 409 GGN---------------DRQILVWCPSRHISDG 427 (441)
Q Consensus 409 ~s~---------------D~~i~vW~~~~~~~~~ 427 (441)
++. |+.|++|++.+++...
T Consensus 362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp EECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred EecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 776 5799999998776443
No 127
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.3e-26 Score=238.31 Aligned_cols=212 Identities=18% Similarity=0.303 Sum_probs=171.8
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC--CeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEE
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC--TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vw 175 (441)
..+|.+.|.++.|+| ++++|++|+.|++|++||+.. +..+..+. +.+.+.++.+++... ..+|++|+.|+.|++|
T Consensus 5 l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~-~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 5 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF-GTILASCSYDGKVLIW 82 (753)
T ss_dssp ---CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTS-CSEEEEEETTSCEEEE
T ss_pred cccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCC-CCEEEEEeCCCeEEEE
Confidence 458999999999987 788999999999999999974 44555554 456788999887532 3589999999999999
Q ss_pred ECCCCc--eeeeecCCCCCeEEEEEecC--CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545 176 DIASGA--ISQTLSGHRDGIMTVEWSTS--SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG 251 (441)
Q Consensus 176 dl~~~~--~~~~l~~h~~~v~~v~fsp~--~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (441)
|+.+++ ....+.+|...|.+++|+|+ ++ ++++|+.||+|++||++.+.....
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~----------------------- 138 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSP----------------------- 138 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCC-----------------------
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcce-----------------------
Confidence 999987 67788899999999999998 76 579999999999999975421100
Q ss_pred ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-------------CCCE
Q 013545 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-------------DGMY 318 (441)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-------------dg~~ 318 (441)
....+|...|.+++|+| ++.+
T Consensus 139 ----------------------------------------------~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 139 ----------------------------------------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp ----------------------------------------------EEEECCSSCEEEEEECCCC---------CGGGCC
T ss_pred ----------------------------------------------eEeecCCCceEEEEecCcccccccccccCCCCCE
Confidence 01235777899999999 5899
Q ss_pred EEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEE
Q 013545 319 LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC 398 (441)
Q Consensus 319 l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~ 398 (441)
|++|+.|++|++||+.++.... .....+.+|.++|.+++
T Consensus 173 l~sgs~dg~I~iwd~~~~~~~~-----------------------------------------~~~~~~~~h~~~V~~l~ 211 (753)
T 3jro_A 173 FVTGGADNLVKIWKYNSDAQTY-----------------------------------------VLESTLEGHSDWVRDVA 211 (753)
T ss_dssp EEEEETTSCEEEEEEETTTTEE-----------------------------------------EEEEEECCCSSCEEEEE
T ss_pred EEEEECCCeEEEEeccCCcccc-----------------------------------------eeeeeecCCCCcEEEEE
Confidence 9999999999999987654211 12245678999999999
Q ss_pred EcCC---CCeEEEeecCCcEEEeCCCCC
Q 013545 399 FSSQ---DQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 399 fspd---~~~l~s~s~D~~i~vW~~~~~ 423 (441)
|+|+ +++|++|+.|++|++|++.++
T Consensus 212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 212 WSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp ECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred eccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 9999 899999999999999999875
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=2.9e-24 Score=216.22 Aligned_cols=281 Identities=12% Similarity=0.072 Sum_probs=208.4
Q ss_pred ccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEE
Q 013545 51 VDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKV 130 (441)
Q Consensus 51 ~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~i 130 (441)
|+| ++.++++++.|++|.+||..+++.. .. +. .+|. +..+.++| ++.+|++++.|++|++
T Consensus 145 ~~p-~~~~~vs~~~d~~V~v~D~~t~~~~----------~~--i~----~g~~--~~~v~~sp-dg~~l~v~~~d~~V~v 204 (543)
T 1nir_A 145 LDL-PNLFSVTLRDAGQIALVDGDSKKIV----------KV--ID----TGYA--VHISRMSA-SGRYLLVIGRDARIDM 204 (543)
T ss_dssp CCG-GGEEEEEEGGGTEEEEEETTTCCEE----------EE--EE----CSTT--EEEEEECT-TSCEEEEEETTSEEEE
T ss_pred cCC-CCEEEEEEcCCCeEEEEECCCceEE----------EE--Ee----cCcc--cceEEECC-CCCEEEEECCCCeEEE
Confidence 776 5678999999999999999876431 00 10 1333 56677776 8999999999999999
Q ss_pred EEC--CCCeEEEEEecCCeeEEEeecc----CCCCccEEEEEe-CCCcEEEEECCCCceeeeecC----------CCC-C
Q 013545 131 WDT--NCTRVVMNFKMPGKVYRTAMSP----LAASHMLIAAGT-EDVQVRLCDIASGAISQTLSG----------HRD-G 192 (441)
Q Consensus 131 Wd~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~las~s-~d~~I~vwdl~~~~~~~~l~~----------h~~-~ 192 (441)
||+ .+++++.++........+++++ ++ .+|++++ .++.|.+||..++++++++.. |.. .
T Consensus 205 ~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg---~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~ 281 (543)
T 1nir_A 205 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYED---RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 281 (543)
T ss_dssp EETTSSSCEEEEEEECCSEEEEEEECCSTTCTT---TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred EECcCCCCcEEEEEecCCCcceEEeCCCcCCCC---CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCc
Confidence 999 8899888888777788888988 54 3555555 589999999999999888764 333 7
Q ss_pred eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (441)
+.++.++|+++.++++...+++|.+||+.+.+++...
T Consensus 282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~------------------------------------------- 318 (543)
T 1nir_A 282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT------------------------------------------- 318 (543)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE-------------------------------------------
T ss_pred eEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE-------------------------------------------
Confidence 8999999998888889999999999998764322100
Q ss_pred ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEE-eecCCcEEEeeCCCCCceeeeeeeEEe-cc
Q 013545 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS-AGSDSRIRLWDVESGRNTLVNFETVRL-QT 350 (441)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-gs~D~~i~~wd~~~~~~~~~~~~~~~~-~~ 350 (441)
...+...+.+++|+|+|+++++ +..+++|.+||+.+++... .+..... +.
T Consensus 319 ---------------------------~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~-~i~~g~~ph~ 370 (543)
T 1nir_A 319 ---------------------------SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA-LVDVGKTPHP 370 (543)
T ss_dssp ---------------------------EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE-EEECSSSBCC
T ss_pred ---------------------------EeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE-eeccCCCCCC
Confidence 0012233567899999997655 4568999999999876321 1111000 11
Q ss_pred CcceEEEeeCC-CcEEEEeC--CCceEEEEccC-------CceEeeecccccceEEEEEcCCCCeEEEee-------cCC
Q 013545 351 SKPIQLATTQD-PAVVFVPC--MTAVKAFDIWS-------GKTCLTFRGHYEYVNCCCFSSQDQELYTGG-------NDR 413 (441)
Q Consensus 351 ~~~~~~~~~~~-~~~~~~~~--~~~~~~wd~~~-------~~~~~~l~gh~~~v~~v~fspd~~~l~s~s-------~D~ 413 (441)
.....+ +.++ +..+++.. ..++.+||..+ ++.+.++.+|.+.+..|+|+|||++|++++ .++
T Consensus 371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~ 449 (543)
T 1nir_A 371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ 449 (543)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHT
T ss_pred CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCc
Confidence 112222 4566 44444443 36899999988 899999999999999999999999999987 378
Q ss_pred cEEEeCCCCCCCC
Q 013545 414 QILVWCPSRHISD 426 (441)
Q Consensus 414 ~i~vW~~~~~~~~ 426 (441)
+|+|||+.+....
T Consensus 450 ~v~v~d~~~~~~~ 462 (543)
T 1nir_A 450 SVAVFDLKNLDAK 462 (543)
T ss_dssp CEEEEETTCTTSC
T ss_pred eEEEEECCCCCCC
Confidence 9999999988754
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=7.3e-24 Score=213.27 Aligned_cols=300 Identities=14% Similarity=0.147 Sum_probs=219.3
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEEC--CCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC---C
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDV--QRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV---D 115 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~ 115 (441)
+|. +.+++|+| ++++|++++.|++|++||+ .+++.. ..+ .+...+..++++|. +
T Consensus 178 g~~--~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~------------~~i------~~g~~p~~va~sp~~~~d 236 (543)
T 1nir_A 178 GYA--VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKV------------AEI------KIGIEARSVESSKFKGYE 236 (543)
T ss_dssp STT--EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEE------------EEE------ECCSEEEEEEECCSTTCT
T ss_pred Ccc--cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEE------------EEE------ecCCCcceEEeCCCcCCC
Confidence 554 88999997 6889999999999999999 544311 011 12234567777651 6
Q ss_pred CCEEEEEe-CCCcEEEEECCCCeEEEEEecCC------------eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce
Q 013545 116 TGLFVTGS-YDHYVKVWDTNCTRVVMNFKMPG------------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182 (441)
Q Consensus 116 ~~~l~sgs-~D~~i~iWd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~ 182 (441)
++++++++ .|++|.+||..+++++..+...+ .+..+.++++. ..++++...++.|.+||+.+.+.
T Consensus 237 g~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~--~~~~vs~~~~g~i~vvd~~~~~~ 314 (543)
T 1nir_A 237 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH--PEFIVNVKETGKVLLVNYKDIDN 314 (543)
T ss_dssp TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS--SEEEEEETTTTEEEEEECTTSSS
T ss_pred CCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC--CEEEEEECCCCeEEEEEecCCCc
Confidence 88888887 58999999999999988776532 45666777653 45778888899999999998765
Q ss_pred ee--eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545 183 SQ--TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA 260 (441)
Q Consensus 183 ~~--~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (441)
+. .+ .+...+..+.|+|+++++++++..+++|++||+.++++...++...
T Consensus 315 l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~--------------------------- 366 (543)
T 1nir_A 315 LTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK--------------------------- 366 (543)
T ss_dssp CEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS---------------------------
T ss_pred ceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC---------------------------
Confidence 44 34 3566788999999999877777789999999999887665543110
Q ss_pred CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEee-cCCcEEEeeCCCCCc
Q 013545 261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAG-SDSRIRLWDVESGRN 338 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs-~D~~i~~wd~~~~~~ 338 (441)
..|.+....+ ++|+ +..++|+. .|++|.+||+.+...
T Consensus 367 ----------------------------------------~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 367 ----------------------------------------TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp ----------------------------------------SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred ----------------------------------------CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 1233323233 5677 66677775 689999999987211
Q ss_pred ---eeeeeeeEEeccCcceEEEeeCCCcEEEEeC--------CCceEEEEccCCceE-eee--------cccccceEEEE
Q 013545 339 ---TLVNFETVRLQTSKPIQLATTQDPAVVFVPC--------MTAVKAFDIWSGKTC-LTF--------RGHYEYVNCCC 398 (441)
Q Consensus 339 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~wd~~~~~~~-~~l--------~gh~~~v~~v~ 398 (441)
.......+..+...+..+.++|++..+++.. ..++.+||+.+++.. ..+ ..|.+.+..++
T Consensus 406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 485 (543)
T 1nir_A 406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 485 (543)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence 0112334444445667788999999999876 358999999998876 443 46678899999
Q ss_pred EcCCCCeEEEe-----ecCCcEEEeCCCCCCCCCccCCc
Q 013545 399 FSSQDQELYTG-----GNDRQILVWCPSRHISDGVDAGP 432 (441)
Q Consensus 399 fspd~~~l~s~-----s~D~~i~vW~~~~~~~~~~~~~~ 432 (441)
|+|||++|+.+ +.|++|.|||..+.++..++.++
T Consensus 486 ~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 486 YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp ECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 99999998855 24799999999999887776653
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=1.2e-22 Score=197.95 Aligned_cols=265 Identities=15% Similarity=0.120 Sum_probs=191.4
Q ss_pred ecCCCCceeEEEccCC-------------CCcEEEEeeCC------CcEEEEECCCCcccCCCCceeccceeEEeecccc
Q 013545 39 VSPHKGSINSLQVDLT-------------EERYLLSGASD------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHE 99 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~-------------~~~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (441)
+.+|...+..+++++. .+..++.++.+ ++|++||+..... ...
T Consensus 113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~------------------~~l 174 (415)
T 2hqs_A 113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ------------------FVV 174 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC------------------EEE
T ss_pred EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC------------------EEE
Confidence 5678777777776531 14456666664 7999999864221 111
Q ss_pred cCcccceeEEEEeeCCCCEEEEEeCCC---cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCc--EEE
Q 013545 100 HGHKYAISSAIWYPVDTGLFVTGSYDH---YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ--VRL 174 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~--I~v 174 (441)
.+|...|.++.|+| ++++|++++.|+ +|++||+.+++........+.+..+.|+|++. .++++++.++. |++
T Consensus 175 ~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~--~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 175 HRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYV 251 (415)
T ss_dssp EEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSS--EEEEEECTTSSCEEEE
T ss_pred eCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCC--EEEEEEecCCCceEEE
Confidence 25778899999987 789999999885 99999999998765555667788899998753 34446666554 999
Q ss_pred EECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC--cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCc
Q 013545 175 CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQ 252 (441)
Q Consensus 175 wdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg--~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (441)
||+++++. ..+..|...+.+++|+|+++++++++..++ .|.+||+.++....
T Consensus 252 ~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~------------------------- 305 (415)
T 2hqs_A 252 MDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR------------------------- 305 (415)
T ss_dssp EETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-------------------------
T ss_pred EECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-------------------------
Confidence 99998876 567789999999999999986544443456 56666765432100
Q ss_pred cCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC---CcEE
Q 013545 253 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD---SRIR 329 (441)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D---~~i~ 329 (441)
...|...+.+++|+|||++|++++.+ .+|+
T Consensus 306 -----------------------------------------------l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~ 338 (415)
T 2hqs_A 306 -----------------------------------------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA 338 (415)
T ss_dssp -----------------------------------------------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred -----------------------------------------------EecCCCcccCeEECCCCCEEEEEECcCCceEEE
Confidence 01123457789999999999988775 5899
Q ss_pred EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-C---ceEEEEccCCceEeeecccccceEEEEEcCCCC
Q 013545 330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-T---AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ 404 (441)
Q Consensus 330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~ 404 (441)
+||+.+++... +. .......++++|++..++.++. . .+.+||+. +.....+.+|.+.|.+++|+|-..
T Consensus 339 ~~d~~~~~~~~-----l~-~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 339 KQDLATGGVQV-----LS-STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEETTTCCEEE-----CC-CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EEECCCCCEEE-----ec-CCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 99999875321 11 1125567889999998777654 2 58889986 666788999999999999999643
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1e-21 Score=184.95 Aligned_cols=286 Identities=12% Similarity=0.097 Sum_probs=192.1
Q ss_pred EccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC-CCcE
Q 013545 50 QVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY-DHYV 128 (441)
Q Consensus 50 ~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~-D~~i 128 (441)
.|.++.+..+++++.+++|++||..+++... .. ..+...+ .+.++| ++++++.++. ++.|
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~------------~~-----~~~~~~~-~~~~s~-dg~~l~~~~~~~~~i 64 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILN------------QI-----TLGYDFV-DTAITS-DCSNVVVTSDFCQTL 64 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEE------------EE-----ECCCCEE-EEEECS-SSCEEEEEESTTCEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceee------------eE-----EccCCcc-eEEEcC-CCCEEEEEeCCCCeE
Confidence 3554455668999999999999998764210 00 1123344 677776 6776655554 8999
Q ss_pred EEEECCCCeE-EEEEecCCeeEE-EeeccCCCCccEEEEEeCC-C--cEEEEECCCCceeeeecCCCCCeEEEEEecCCC
Q 013545 129 KVWDTNCTRV-VMNFKMPGKVYR-TAMSPLAASHMLIAAGTED-V--QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE 203 (441)
Q Consensus 129 ~iWd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~las~s~d-~--~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~ 203 (441)
.+||+.+++. ...+........ +.+++++ ..++++..+ + .|.+||+++++.+..+..+ ..+.+++|+|+++
T Consensus 65 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~ 140 (331)
T 3u4y_A 65 VQIETQLEPPKVVAIQEGQSSMADVDITPDD---QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGN 140 (331)
T ss_dssp EEEECSSSSCEEEEEEECSSCCCCEEECTTS---SEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSS
T ss_pred EEEECCCCceeEEecccCCCCccceEECCCC---CEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCC
Confidence 9999999887 666655444444 7787754 345555444 3 8999999999988777654 4568999999998
Q ss_pred cEEEEeecCCc-EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545 204 WILVTGGCDGA-IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282 (441)
Q Consensus 204 ~~l~s~s~Dg~-I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (441)
+++++...++. |.+|++...+.+.... .
T Consensus 141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~-------------------------------------------------- 169 (331)
T 3u4y_A 141 GLILIDRSSANTVRRFKIDADGVLFDTG-Q-------------------------------------------------- 169 (331)
T ss_dssp CEEEEEETTTTEEEEEEECTTCCEEEEE-E--------------------------------------------------
T ss_pred EEEEEecCCCceEEEEEECCCCcEeecC-C--------------------------------------------------
Confidence 77777777788 9999987532211100 0
Q ss_pred CCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC
Q 013545 283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD 361 (441)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (441)
. .......+..++|+|||+++ +++..+++|++||+.+++... ...... ....+..++++++
T Consensus 170 ----~------------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~-~~~~~~~~~~spd 231 (331)
T 3u4y_A 170 ----E------------FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-LLNAVG-TNNLPGTIVVSRD 231 (331)
T ss_dssp ----E------------EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-EEEEEE-CSSCCCCEEECTT
T ss_pred ----c------------cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-eeeecc-CCCCCceEEECCC
Confidence 0 00011236789999999965 555678999999999876411 111222 2345667899999
Q ss_pred CcEEEEeCC--CceEEEEccCCce--Eeeeccc----ccc---eEEEEEcCCCCeEEEe-ecCCcEEEeCCCCCCCCC
Q 013545 362 PAVVFVPCM--TAVKAFDIWSGKT--CLTFRGH----YEY---VNCCCFSSQDQELYTG-GNDRQILVWCPSRHISDG 427 (441)
Q Consensus 362 ~~~~~~~~~--~~~~~wd~~~~~~--~~~l~gh----~~~---v~~v~fspd~~~l~s~-s~D~~i~vW~~~~~~~~~ 427 (441)
+..+++.+. ..+.+||+.+++. +..+..+ ..+ ...++|+|||++|+.+ ..+++|++|+++......
T Consensus 232 g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 232 GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGY 309 (331)
T ss_dssp SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccc
Confidence 998777654 5789999998877 3333322 222 3568999999998655 456799999998766443
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=1.7e-21 Score=183.88 Aligned_cols=280 Identities=10% Similarity=0.150 Sum_probs=182.6
Q ss_pred cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCC-CcEEEEECC-
Q 013545 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD-HYVKVWDTN- 134 (441)
Q Consensus 57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D-~~i~iWd~~- 134 (441)
.++++++.|+.|++||+...... ..+.. ..|...+.++.++| ++++|++++.+ +.|++|++.
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~---------~~~~~------~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~ 69 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGAL---------TLTQV------VDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAP 69 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCE---------EEEEE------EECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEeCCCCCeEEEEEECCCCcE---------EEeee------EecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecC
Confidence 34566688999999998531100 00100 13455677788887 78888888876 999999987
Q ss_pred -CCe--EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC---CCceeeeecCCCCCeEEEEEecCCCcEEEE
Q 013545 135 -CTR--VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA---SGAISQTLSGHRDGIMTVEWSTSSEWILVT 208 (441)
Q Consensus 135 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~---~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s 208 (441)
+++ .+..+...+.+..+.+++++. .+++++..++.|.+||+. +.+....+..+ ..+.+++|+|+++.++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~ 146 (343)
T 1ri6_A 70 DDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVP 146 (343)
T ss_dssp TTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEE
T ss_pred CCCceeeccccccCCCCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEe
Confidence 555 344555555667778887642 344555568899999994 33445555544 458899999999876555
Q ss_pred eecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCccc
Q 013545 209 GGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ 287 (441)
Q Consensus 209 ~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (441)
+..++.|++||+.+ ++.......
T Consensus 147 ~~~~~~v~~~d~~~~~~~~~~~~~-------------------------------------------------------- 170 (343)
T 1ri6_A 147 ALKQDRICLFTVSDDGHLVAQDPA-------------------------------------------------------- 170 (343)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEE--------------------------------------------------------
T ss_pred cCCCCEEEEEEecCCCceeeeccc--------------------------------------------------------
Confidence 54899999999875 321110000
Q ss_pred ccCCCcccccccceeeccCeEEEEEccCCCEEEE-eecCCcEEEeeCCC--CCceeeeeeeEE-ec-----cCcceEEEe
Q 013545 288 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS-AGSDSRIRLWDVES--GRNTLVNFETVR-LQ-----TSKPIQLAT 358 (441)
Q Consensus 288 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-gs~D~~i~~wd~~~--~~~~~~~~~~~~-~~-----~~~~~~~~~ 358 (441)
.. .......+..++|+|++++++. +..+++|++||+.. ++... ..... .. ...+..+++
T Consensus 171 ~~----------~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~i~~ 238 (343)
T 1ri6_A 171 EV----------TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC--VQTLDMMPENFSDTRWAADIHI 238 (343)
T ss_dssp EE----------ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE--EEEEECSCTTCCSCCCEEEEEE
T ss_pred cc----------ccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE--EeeccccCccccccCCccceEE
Confidence 00 0001124678999999997654 45889999999954 33211 11111 11 112335889
Q ss_pred eCCCcEEEEeC--CCceEEEEcc--CC--ceEeeecccccceEEEEEcCCCCeEEEee-cCCcEEEe--CCCCCC
Q 013545 359 TQDPAVVFVPC--MTAVKAFDIW--SG--KTCLTFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVW--CPSRHI 424 (441)
Q Consensus 359 ~~~~~~~~~~~--~~~~~~wd~~--~~--~~~~~l~gh~~~v~~v~fspd~~~l~s~s-~D~~i~vW--~~~~~~ 424 (441)
++++..+++.+ ...+.+|++. ++ +.+..+..+.. +.+++|+|||++|++++ .|+.|++| +..++.
T Consensus 239 s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 239 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred CCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 99998777554 3689999997 33 34445555555 89999999999888776 68999999 544554
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=3e-21 Score=181.61 Aligned_cols=294 Identities=11% Similarity=0.079 Sum_probs=185.3
Q ss_pred cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccc-ceeEEEEeeCCCCE-EEEEeCCCcEEEEECC
Q 013545 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY-AISSAIWYPVDTGL-FVTGSYDHYVKVWDTN 134 (441)
Q Consensus 57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~~~~~~~-l~sgs~D~~i~iWd~~ 134 (441)
++|++++.|++|++||+.+++... .+. .++.. .+..+.++| ++++ +++++.++.|.+||+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~----------~~~------~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDK----------VIT------IADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEE----------EEE------CTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEE----------EEE------cCCCCCCccceEEcC-CCCEEEEEeCCCCeEEEEECC
Confidence 479999999999999997654210 010 12211 255677776 5655 5677778999999999
Q ss_pred CCeEEEEEecCC------eeEEEeeccCCCCccEEEEEe------------CCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545 135 CTRVVMNFKMPG------KVYRTAMSPLAASHMLIAAGT------------EDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (441)
Q Consensus 135 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~las~s------------~d~~I~vwdl~~~~~~~~l~~h~~~v~~v 196 (441)
+++.+..+.... .+..+.+++++. .++++. .++.|.+||+++++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRIDLSTPEERVKSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEEECCBTTEEEECTTCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeEEcCCcccccccccceEECCCCC---EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 999887776543 455667777542 455554 578999999999988777764 4457889
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
+|+|+++++++ + ++.|.+||+.+++....+...... ....++++
T Consensus 141 ~~s~dg~~l~~-~--~~~i~~~d~~~~~~~~~~~~~~~~---------------------------------~~~~~s~d 184 (337)
T 1pby_B 141 AWARDGSKLYG-L--GRDLHVMDPEAGTLVEDKPIQSWE---------------------------------AETYAQPD 184 (337)
T ss_dssp EECTTSSCEEE-E--SSSEEEEETTTTEEEEEECSTTTT---------------------------------TTTBCCCB
T ss_pred EECCCCCEEEE-e--CCeEEEEECCCCcEeeeeeccccC---------------------------------CCceeCCC
Confidence 99999987544 4 689999999887655443211000 00001111
Q ss_pred ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL 356 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (441)
++........ ......+.......++..... .....|.+||+.+++... .........+..+
T Consensus 185 g~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~ 246 (337)
T 1pby_B 185 VLAVWNQHES--------------SGVMATPFYTARKDIDPADPT-AYRTGLLTMDLETGEMAM---REVRIMDVFYFST 246 (337)
T ss_dssp CCCCCCCCTT--------------TTEEEEEEEEEBTTSCTTSGG-GEEEEEEEEETTTCCEEE---EEEEECSSCEEEE
T ss_pred ccEEeeeccC--------------CCceeeeeecccccccccccc-ccccceEEEeCCCCCceE---eecCCCCCceeeE
Confidence 1100000000 000000001111111000000 011168999999876431 1112223455678
Q ss_pred EeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCC
Q 013545 357 ATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDG 427 (441)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~ 427 (441)
++++++..++++ ...+.+||+.+++....+..+ ..+.+++|+|||++|++++.|+.|++|++.+++...
T Consensus 247 ~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 247 AVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp EECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred EECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence 899999988877 678999999999888877644 457899999999999998999999999998877443
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=2.7e-21 Score=202.34 Aligned_cols=325 Identities=12% Similarity=0.084 Sum_probs=192.1
Q ss_pred CCceeEEEccCCCCcEEEEeeC-CC-----cEEEEECCCCcccCCCCceeccce-----eEEeeccc-----ccCcccce
Q 013545 43 KGSINSLQVDLTEERYLLSGAS-DS-----SVAVYDVQRATDYEGGGHIAKHRS-----VFVVDKQH-----EHGHKYAI 106 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~-Dg-----~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~-----~~~h~~~V 106 (441)
...|.+++|+| +|++|++++. |+ +|++||+.+++.... +..+.. .+...... .......|
T Consensus 36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL---VDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE---ECGGGTC--------------------CCEES
T ss_pred CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEc---cchhhcccccccccchhhhhhhhhhhccccCc
Confidence 45799999997 6889999998 88 899999987653110 000000 00000000 00001346
Q ss_pred eEEEEeeCCCCEEEEEeCCCcEEEEECCCC---eEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee
Q 013545 107 SSAIWYPVDTGLFVTGSYDHYVKVWDTNCT---RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS 183 (441)
Q Consensus 107 ~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~ 183 (441)
.++.|+| |+++|++++. ++|++||+.++ .........+.+..+.++|++. .|+.++ ++.|++||+.+++..
T Consensus 112 ~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~---~la~~~-~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 112 VDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGG---FVSFIR-GRNLWVIDLASGRQM 185 (741)
T ss_dssp CCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSS---EEEEEE-TTEEEEEETTTTEEE
T ss_pred ceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCC---EEEEEe-CCcEEEEecCCCCEE
Confidence 7788887 8999999887 89999999887 5433333445678889998753 566665 568999999998876
Q ss_pred eeecCCCCC----------------eEEEEEecCCCcEEEEeecC-CcEEEEEcCCCceeeEeccCCccccCCCCccccc
Q 013545 184 QTLSGHRDG----------------IMTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK 246 (441)
Q Consensus 184 ~~l~~h~~~----------------v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (441)
+....+... +.++.|+||++++ ++++.| +.+..|+... ...... .....
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l-~~~~~d~~~~~~~~~~~------~~p~~~-------~~~~~ 251 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAI-AYARIDESPVPVQKRYE------VYADRT-------DVIEQ 251 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCE-EEEEEECTTSCEEEEEE------ECSSCE-------EEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEE-EEEEEcCCCCceEecCC------CCCCcc-------cceEe
Confidence 655544432 4789999999975 555544 3344443100 000000 00000
Q ss_pred ccccCccCCcCCCCCCcccCCCCCccccCcccccC-C-CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec
Q 013545 247 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA-K-GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS 324 (441)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 324 (441)
... ..+..........+.. . +... .+ .....|...+..++| |||++|+.++.
T Consensus 252 ~~~----------------~~g~~~~~~~l~~~d~~~~~~~~-~~--------~~~~~~~~~~~~~~~-pDg~~l~~~~~ 305 (741)
T 2ecf_A 252 RYP----------------AAGDANVQVKLGVISPAEQAQTQ-WI--------DLGKEQDIYLARVNW-RDPQHLSFQRQ 305 (741)
T ss_dssp ECC----------------BTTSCCCEEEEEEECSSTTCCCE-EE--------CCCSCSSEEEEEEEE-EETTEEEEEEE
T ss_pred ecC----------------CCCCCCCeeEEEEEECCCCCceE-Ee--------cCCCCcceEEEEEEe-CCCCEEEEEEe
Confidence 000 0000000000000000 0 0000 00 000135567899999 99999987654
Q ss_pred -----CCcEEEeeCCCCCceeeeeeeEEeccC----cceEEEeeCCCcEEEEeCC-CceEEEEcc-CCceEeeecccccc
Q 013545 325 -----DSRIRLWDVESGRNTLVNFETVRLQTS----KPIQLATTQDPAVVFVPCM-TAVKAFDIW-SGKTCLTFRGHYEY 393 (441)
Q Consensus 325 -----D~~i~~wd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~wd~~-~~~~~~~l~gh~~~ 393 (441)
+.+|++||+.+++.... + ..... ....+++++|+.++++... +..++|.+. +++ ...+..|...
T Consensus 306 ~~~~~~~~i~~~d~~~g~~~~~-~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~ 380 (741)
T 2ecf_A 306 SRDQKKLDLVEVTLASNQQRVL-A---HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWS 380 (741)
T ss_dssp ETTSSEEEEEEEETTTCCEEEE-E---EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSC
T ss_pred cccCCeEEEEEEECCCCceEEE-E---EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceE
Confidence 56899999998764221 1 11111 1235678999997766654 457788764 455 7888889888
Q ss_pred eEEE-EEcCCCCeEE-EeecCC--cEEEeCCCC
Q 013545 394 VNCC-CFSSQDQELY-TGGNDR--QILVWCPSR 422 (441)
Q Consensus 394 v~~v-~fspd~~~l~-s~s~D~--~i~vW~~~~ 422 (441)
|..+ +|||||++|+ +++.|+ +++||+++.
T Consensus 381 v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 381 VDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9887 5999999876 555555 899998763
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=1.8e-19 Score=170.82 Aligned_cols=274 Identities=12% Similarity=0.075 Sum_probs=194.1
Q ss_pred CCCceeEEEccCCCCcEEEEeeC-------CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 42 HKGSINSLQVDLTEERYLLSGAS-------DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
....+..++|+| ++++|+.++. ++.|.+||..+++... .+. +...+..+.+++
T Consensus 39 ~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~----------~~~--------~~~~~~~~~~s~- 98 (353)
T 3vgz_A 39 VGKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ----------AIH--------NDLKPFGATINN- 98 (353)
T ss_dssp EESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEE----------EEE--------ESSCCCSEEEET-
T ss_pred hccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE----------EEe--------cCCCcceEEECC-
Confidence 446788999997 4666666653 6789999998664210 010 111244566766
Q ss_pred CCC-EEEEEeCCCcEEEEECCCCeEEEEEecCC----------eeEEEeeccCCCCccEEEEE-eCCCcEEEEECCCCce
Q 013545 115 DTG-LFVTGSYDHYVKVWDTNCTRVVMNFKMPG----------KVYRTAMSPLAASHMLIAAG-TEDVQVRLCDIASGAI 182 (441)
Q Consensus 115 ~~~-~l~sgs~D~~i~iWd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~las~-s~d~~I~vwdl~~~~~ 182 (441)
+++ +++++..++.|.+||+.+++.+..+.... ....+.+++++. .+++++ ..++.|.+||+++++.
T Consensus 99 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~i~~~d~~~~~~ 176 (353)
T 3vgz_A 99 TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN--TVYISGIGKESVIWVVDGGNIKL 176 (353)
T ss_dssp TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEESSSCEEEEEETTTTEE
T ss_pred CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC--EEEEEecCCCceEEEEcCCCCce
Confidence 666 55566678999999999999888777643 246677887643 344444 3578899999999999
Q ss_pred eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ 262 (441)
Q Consensus 183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (441)
+..+..+...+.+++|+|+++. ++.++.++.|.+||+.+++....+...
T Consensus 177 ~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~i~~~d~~~~~~~~~~~~~------------------------------ 225 (353)
T 3vgz_A 177 KTAIQNTGKMSTGLALDSEGKR-LYTTNADGELITIDTADNKILSRKKLL------------------------------ 225 (353)
T ss_dssp EEEECCCCTTCCCCEEETTTTE-EEEECTTSEEEEEETTTTEEEEEEECC------------------------------
T ss_pred EEEecCCCCccceEEECCCCCE-EEEEcCCCeEEEEECCCCeEEEEEEcC------------------------------
Confidence 8888766677889999999986 456677999999999876544332110
Q ss_pred cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEeeCCCCCceee
Q 013545 263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTLV 341 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~wd~~~~~~~~~ 341 (441)
..++...+.+++|+|+|++++.++ .++.|.+||+.+++...
T Consensus 226 -------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~- 267 (353)
T 3vgz_A 226 -------------------------------------DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA- 267 (353)
T ss_dssp -------------------------------------CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE-
T ss_pred -------------------------------------CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-
Confidence 001233477899999999766655 45999999998876321
Q ss_pred eeeeEEeccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC
Q 013545 342 NFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D 412 (441)
... ...+..+++++++..+++.. ...+.+||..+++.+..+..+. .+.+++|+|||++|+.+..+
T Consensus 268 ---~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 268 ---KVA--APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ---EEE--CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEEC
T ss_pred ---EEE--cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEcc
Confidence 112 23345688899998766654 3689999999999888877554 67999999999977765544
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=6.5e-21 Score=175.41 Aligned_cols=255 Identities=13% Similarity=0.116 Sum_probs=175.3
Q ss_pred EEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC-CeE
Q 013545 60 LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-TRV 138 (441)
Q Consensus 60 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~-~~~ 138 (441)
.+++.|++|++||+.+++.. ....|...|.++.|+| ++.+|++++ ++.|++||+.+ ++.
T Consensus 16 ~~~~~~~~i~~~d~~~~~~~------------------~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTRKMR------------------VVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp --CCCCEEEEEEETTTTEEE------------------EEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCCcceeEEEEeCCCCcee------------------eeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 35678999999999765320 0124677899999987 788999887 78999999998 776
Q ss_pred EEEEecC--CeeEEEeeccCCCCccEEEEEe--CCCc--EEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecC
Q 013545 139 VMNFKMP--GKVYRTAMSPLAASHMLIAAGT--EDVQ--VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD 212 (441)
Q Consensus 139 ~~~~~~~--~~~~~~~~~~~~~~~~~las~s--~d~~--I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D 212 (441)
....... ..+..+.+++++ ..|++++ .++. |.++++.+++ ...+..+. .+.+++|+|+++.++++++.|
T Consensus 76 ~~~~~~~~~~~~~~~~~spdg---~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 150 (297)
T 2ojh_A 76 EKVDTGFATICNNDHGISPDG---ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRD 150 (297)
T ss_dssp EECCCTTCCCBCSCCEECTTS---SEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEET
T ss_pred eEeccccccccccceEECCCC---CEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCC
Confidence 5544332 445667788764 3666666 3344 4455555555 34444443 488999999999776688899
Q ss_pred CcEEEEEcCCCc-eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCC
Q 013545 213 GAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP 291 (441)
Q Consensus 213 g~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (441)
+.+++|+++... ...
T Consensus 151 ~~~~l~~~~~~~~~~~---------------------------------------------------------------- 166 (297)
T 2ojh_A 151 QVFDIYSMDIDSGVET---------------------------------------------------------------- 166 (297)
T ss_dssp TEEEEEEEETTTCCEE----------------------------------------------------------------
T ss_pred CceEEEEEECCCCcce----------------------------------------------------------------
Confidence 999999975211 000
Q ss_pred CcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC
Q 013545 292 GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM 370 (441)
Q Consensus 292 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (441)
....|...+.+++|+|+|++|+.++ .|+.+++|++........ .+.........+.+++++..++..+.
T Consensus 167 -------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 167 -------RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE---RITDSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp -------ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE---ECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred -------EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE---EEecCCcccCCeEECCCCCEEEEEEc
Confidence 0112345688999999999887666 599999998863221111 11111223445788999998776543
Q ss_pred ------------CceEEEEccCCce--EeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545 371 ------------TAVKAFDIWSGKT--CLTFRGHYEYVNCCCFSSQDQELYTGGNDR 413 (441)
Q Consensus 371 ------------~~~~~wd~~~~~~--~~~l~gh~~~v~~v~fspd~~~l~s~s~D~ 413 (441)
..+.+||+.+++. +..+.+|...+.+++|+||+++|++++.|.
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 3589999988765 445568999999999999999999887764
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=7.8e-21 Score=198.25 Aligned_cols=316 Identities=11% Similarity=0.077 Sum_probs=186.2
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccc---ceeEEEEeeCCCCEEE
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY---AISSAIWYPVDTGLFV 120 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~~l~ 120 (441)
..+.+++|+| +++++++ +.||+|++||+.+++.. .. ..+|.. .|.++.|+| |+++|+
T Consensus 17 ~~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~------------~~-----~~~~~~~~~~v~~~~~Sp-Dg~~l~ 76 (723)
T 1xfd_A 17 IHDPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTST------------VL-----IEGKKIESLRAIRYEISP-DREYAL 76 (723)
T ss_dssp CCCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCE------------EE-----ECTTTTTTTTCSEEEECT-TSSEEE
T ss_pred ccccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEE------------EE-----eccccccccccceEEECC-CCCEEE
Confidence 4577899997 5677766 78999999999876431 01 113332 488888887 899999
Q ss_pred EEeCC---------CcEEEEECCCCeEEEEEec-CC---eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545 121 TGSYD---------HYVKVWDTNCTRVVMNFKM-PG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS 187 (441)
Q Consensus 121 sgs~D---------~~i~iWd~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~ 187 (441)
+++.| +.|.+||+.+++. ..+.. .+ .+..+.++|++. .||.++. +.|++||+.+++..+...
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~---~la~~~~-~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ---QLIFIFE-NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT---CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC---EEEEEEC-CeEEEEECCCCceEEEec
Confidence 99875 6788999998876 22322 22 255677888653 5666654 789999999998776665
Q ss_pred CCCCCe------------------EEEEEecCCCcEEEEee-cCCcEEEEEcCCCceeeEeccCCccccCCCCccccccc
Q 013545 188 GHRDGI------------------MTVEWSTSSEWILVTGG-CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSL 248 (441)
Q Consensus 188 ~h~~~v------------------~~v~fsp~~~~~l~s~s-~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (441)
.+...+ .+++|+|+++.+ ++++ .++.+++|++..... .. .+......
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l-a~~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~- 217 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL-AYAAINDSRVPIMELPTYTG-----SI-------YPTVKPYH- 217 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE-EEEEEECTTSCEEEECCCSS-----SS-------SCCCEEEE-
T ss_pred CCCCCceECcccceeEEEEeccCcceEEECCCCCEE-EEEEECCCccceEEeeccCC-----cC-------CCcceecc-
Confidence 544433 789999999865 4554 446788888642110 00 00000000
Q ss_pred ccCccCCcCCCCCCcccCCCCC--ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec--
Q 013545 249 SAGQNSSVKPRAPQKRSANGNG--VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-- 324 (441)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-- 324 (441)
+...|.. ......+.+. .+.....+.. ......|...+.+++|||||++|++.+.
T Consensus 218 ---------------~~~~G~~~~~~~l~~~d~~-~~~~~~~l~~-----~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 276 (723)
T 1xfd_A 218 ---------------YPKAGSENPSISLHVIGLN-GPTHDLEMMP-----PDDPRMREYYITMVKWATSTKVAVTWLNRA 276 (723)
T ss_dssp ---------------CCBTTSCCCEEEEEEEESS-SSCCCEECCC-----CCCGGGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred ---------------CCCCCCCCCeeEEEEEECC-CCceeEEeeC-----CccCCCccceeEEEEEeCCCeEEEEEEcCC
Confidence 0000000 0000000000 0000000000 0001123456899999999998877653
Q ss_pred --CCcEEEeeCCCCCceeeeeeeEEeccCc----ceEEEeeCCCcEEEEe-C--CC------ceEEEEccCCce---Eee
Q 013545 325 --DSRIRLWDVESGRNTLVNFETVRLQTSK----PIQLATTQDPAVVFVP-C--MT------AVKAFDIWSGKT---CLT 386 (441)
Q Consensus 325 --D~~i~~wd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~--~~------~~~~wd~~~~~~---~~~ 386 (441)
+..|++||+.+++.... +. ...... ...++++||+..++.. . .. .+.+||+.++.. ...
T Consensus 277 ~~~~~i~~~d~~~g~~~~~-~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 353 (723)
T 1xfd_A 277 QNVSILTLCDATTGVCTKK-HE--DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS 353 (723)
T ss_dssp SCEEEEEEEETTTCCEEEE-EE--EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB
T ss_pred CCeEEEEEEeCCCCcceEE-EE--eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE
Confidence 35799999998763221 11 111111 1256889999866543 2 23 355566323333 556
Q ss_pred ecccccceEE-EEEcCCCCeEEEeecC---CcEEEeCCCC
Q 013545 387 FRGHYEYVNC-CCFSSQDQELYTGGND---RQILVWCPSR 422 (441)
Q Consensus 387 l~gh~~~v~~-v~fspd~~~l~s~s~D---~~i~vW~~~~ 422 (441)
+..+...+.. ++|||||++|+..+.+ +.++||+++.
T Consensus 354 l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 354 ITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred eecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 6644444554 7999999999865554 7899998764
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=8.1e-20 Score=191.14 Aligned_cols=281 Identities=11% Similarity=0.058 Sum_probs=190.7
Q ss_pred ceeEEEccCCCCcEEEEeeCCCcEEEEECCCC---cccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRA---TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 121 (441)
.|.+++||| ++++|++++. ++|++||+.++ ... ....|...+..+.|+| |+++|+.
T Consensus 110 ~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~------------------~l~~~~~~~~~~~~SP-DG~~la~ 168 (741)
T 2ecf_A 110 GIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVR------------------QLTHGEGFATDAKLSP-KGGFVSF 168 (741)
T ss_dssp ESCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCC------------------BCCCSSSCEEEEEECT-TSSEEEE
T ss_pred CcceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEE------------------EcccCCcccccccCCC-CCCEEEE
Confidence 388999997 5788998887 99999999866 211 1224566788888887 8999998
Q ss_pred EeCCCcEEEEECCCCeEEEEEecCCe-----------------eEEEeeccCCCCccEEEEEeCCC--------------
Q 013545 122 GSYDHYVKVWDTNCTRVVMNFKMPGK-----------------VYRTAMSPLAASHMLIAAGTEDV-------------- 170 (441)
Q Consensus 122 gs~D~~i~iWd~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~las~s~d~-------------- 170 (441)
++. +.|.+||+.+++.......... +..+.|+|++. .|++++.|+
T Consensus 169 ~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~---~l~~~~~d~~~~~~~~~~~~~p~ 244 (741)
T 2ecf_A 169 IRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS---AIAYARIDESPVPVQKRYEVYAD 244 (741)
T ss_dssp EET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS---CEEEEEEECTTSCEEEEEEECSS
T ss_pred EeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCC---EEEEEEEcCCCCceEecCCCCCC
Confidence 875 5999999998876543322211 24567888653 466655544
Q ss_pred -------------------cEEEEECCC-Cceeeeec--CCCCCeEEEEEecCCCcEEEEee----cCCcEEEEEcCCCc
Q 013545 171 -------------------QVRLCDIAS-GAISQTLS--GHRDGIMTVEWSTSSEWILVTGG----CDGAIRFWDIRRAG 224 (441)
Q Consensus 171 -------------------~I~vwdl~~-~~~~~~l~--~h~~~v~~v~fsp~~~~~l~s~s----~Dg~I~iWD~~~~~ 224 (441)
.|.+||+++ ++...... +|...+..++| |+++.+++++. .+..|++||+.+++
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~ 323 (741)
T 2ecf_A 245 RTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ 323 (741)
T ss_dssp CEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred cccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence 789999998 87654433 47888999999 99987544433 35689999998765
Q ss_pred eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeec
Q 013545 225 CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY 304 (441)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 304 (441)
+...+..... .+.
T Consensus 324 ~~~~~~~~~~-------------------------------------------------------------------~~~ 336 (741)
T 2ecf_A 324 QRVLAHETSP-------------------------------------------------------------------TWV 336 (741)
T ss_dssp EEEEEEEECS-------------------------------------------------------------------SCC
T ss_pred eEEEEEcCCC-------------------------------------------------------------------CcC
Confidence 5443311000 000
Q ss_pred cCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE-EeeCCCcEEEE-eCCC---ceEEEEcc
Q 013545 305 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL-ATTQDPAVVFV-PCMT---AVKAFDIW 379 (441)
Q Consensus 305 ~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~---~~~~wd~~ 379 (441)
..+.+++|+|||+++++++.|++++||.+..... .. .+.........+ .+++++..++. +... .+++|++.
T Consensus 337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~---~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AA---ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EE---ESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-ee---eeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 1244678999999999999999888887753211 11 111112222334 58999986654 4333 78999986
Q ss_pred C-CceEeeecccccceEEEEEcCCCCeEEEeecC----CcEEEeCCCCC
Q 013545 380 S-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGND----RQILVWCPSRH 423 (441)
Q Consensus 380 ~-~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D----~~i~vW~~~~~ 423 (441)
. ++....+.+ ...+.+++|||||++|+....+ ..+.+|+..+.
T Consensus 413 ~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 413 LQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp TTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred cCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 4 666677776 6678999999999998865433 45888887554
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=5.5e-20 Score=191.43 Aligned_cols=295 Identities=11% Similarity=0.067 Sum_probs=183.0
Q ss_pred eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcc--cCCCCceecccee---EEeecccccCcccceeEEEEeeCCCCEEE
Q 013545 46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATD--YEGGGHIAKHRSV---FVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (441)
Q Consensus 46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~h~~~V~~~~~~~~~~~~l~ 120 (441)
++.+.|. ++.+++++.|+ | +||+.+++. .. +..+... +..+......+...|.++.++| | ..++
T Consensus 28 ~~~~~w~---g~~~~~~~~~~-i-~~d~~tg~~~~~~----l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp-d-~~~~ 96 (706)
T 2z3z_A 28 VVGLQWM---GDNYVFIEGDD-L-VFNKANGKSAQTT----RFSAADLNALMPEGCKFQTTDAFPSFRTLDAG-R-GLVV 96 (706)
T ss_dssp CTTCEEE---TTEEEEEETTE-E-EEEC-------CE----EEEHHHHHTTC-----------CCCEEEEETT-T-TEEE
T ss_pred CCCCcCc---CCeEEEEeCCc-E-EEECCCCcEeeEE----eechhHhhhhccchhccccccccCceeEEECC-C-CeEE
Confidence 6667776 34577778888 8 999987753 11 0000000 0000000112225688899987 5 4555
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-----CceeeeecCCCCC---
Q 013545 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-----GAISQTLSGHRDG--- 192 (441)
Q Consensus 121 sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-----~~~~~~l~~h~~~--- 192 (441)
.+ .|++|++||+.+++........+.+..+.++|++. .|+.+ .++.|++||+.+ ++..+....+...
T Consensus 97 ~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~---~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 97 LF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGD---RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp EE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSS---EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred EE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCC---EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 44 45999999999988766555556667778888653 56664 579999999998 8766555544443
Q ss_pred -----------eEEEEEecCCCcEEEEeec-CC--------------------------------cEEEEEcCCCceeeE
Q 013545 193 -----------IMTVEWSTSSEWILVTGGC-DG--------------------------------AIRFWDIRRAGCFRV 228 (441)
Q Consensus 193 -----------v~~v~fsp~~~~~l~s~s~-Dg--------------------------------~I~iWD~~~~~~~~~ 228 (441)
+.++.|+|+++++ ++++. +. .|++||+.++....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~l-a~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~- 249 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCL-AFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY- 249 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEE-EEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE-
T ss_pred ccchhhhhcCCCceEEECCCCCEE-EEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe-
Confidence 4899999999864 55552 22 23333332221100
Q ss_pred eccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeE
Q 013545 229 LDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVT 308 (441)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 308 (441)
+ .....|...+.
T Consensus 250 ------------------------------------------------------------~--------~~~~~~~~~~~ 261 (706)
T 2z3z_A 250 ------------------------------------------------------------L--------QTGEPKEKFLT 261 (706)
T ss_dssp ------------------------------------------------------------C--------CCCSCTTCEEE
T ss_pred ------------------------------------------------------------e--------ccCCCCceeEe
Confidence 0 00013445689
Q ss_pred EEEEccCCCEEEEeecCC-----cEEEeeCCCCCceeeeeeeEEeccC---cceEEEeeC--CCcEEEEeCC-CceEEEE
Q 013545 309 GLKVTEDGMYLLSAGSDS-----RIRLWDVESGRNTLVNFETVRLQTS---KPIQLATTQ--DPAVVFVPCM-TAVKAFD 377 (441)
Q Consensus 309 ~l~~s~dg~~l~sgs~D~-----~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~-~~~~~wd 377 (441)
+++|+|||++|++++.|+ +|++||+.+++........ . ... ....+++++ ++.+++++.. +.+++|.
T Consensus 262 ~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~-~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 262 NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-T-DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE-E-CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc-c-CCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 999999999999988876 9999999987322111110 1 111 123467888 9987776654 5688998
Q ss_pred cc-CCceEeeecccccceEE-EEEcCCCCeEEEeec-CC----cEEEeCCCCCCCCCc
Q 013545 378 IW-SGKTCLTFRGHYEYVNC-CCFSSQDQELYTGGN-DR----QILVWCPSRHISDGV 428 (441)
Q Consensus 378 ~~-~~~~~~~l~gh~~~v~~-v~fspd~~~l~s~s~-D~----~i~vW~~~~~~~~~~ 428 (441)
+. +++.+..+.+|...+.+ ++|+|||++|+.++. ++ .|..|+..++....+
T Consensus 340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l 397 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDL 397 (706)
T ss_dssp EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEES
T ss_pred EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceec
Confidence 86 67888889989888887 899999998875544 44 566667766654433
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=7.6e-20 Score=198.47 Aligned_cols=280 Identities=10% Similarity=0.041 Sum_probs=200.3
Q ss_pred CCCceeEEEcc-CCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccc-ceeEEEEeeCCCCEE
Q 013545 42 HKGSINSLQVD-LTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY-AISSAIWYPVDTGLF 119 (441)
Q Consensus 42 H~~~V~~l~~s-~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~~~~~~~l 119 (441)
|.+.|.+++|+ | ++++|++++ ++.|.+|++..+... ....|.. .+..+.|+ |+..|
T Consensus 294 ~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~------------------~~~~~~~~~~~~~~~s--dg~~l 351 (1045)
T 1k32_A 294 SIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVL------------------KVPEPLRIRYVRRGGD--TKVAF 351 (1045)
T ss_dssp ECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEE------------------ECSCCSCEEEEEECSS--SEEEE
T ss_pred cccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceE------------------EccCCCcceEEeeeEc--CCCeE
Confidence 44579999999 7 577788887 899999998754311 0124555 67777777 78899
Q ss_pred EEEeCCCcEE-EEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 013545 120 VTGSYDHYVK-VWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW 198 (441)
Q Consensus 120 ~sgs~D~~i~-iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~f 198 (441)
++++.+..+. +||+.++...........+..+.++|++ ..|++++.++.|++||+++++....+.+|...+.+++|
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG---~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~ 428 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG---KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 428 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS---SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred EEEECCCceEEEEECCCCCceEecCCccceeeeEECCCC---CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEE
Confidence 9999988888 9999877654322233557788888864 47888889999999999999988888899999999999
Q ss_pred ecCCCcEEEEeecC----------CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545 199 STSSEWILVTGGCD----------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG 268 (441)
Q Consensus 199 sp~~~~~l~s~s~D----------g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (441)
+|+++++ ++++.+ +.|++||+.+++ ...+
T Consensus 429 SpDG~~l-a~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l--------------------------------------- 467 (1045)
T 1k32_A 429 SDNSRFI-AYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA--------------------------------------- 467 (1045)
T ss_dssp CTTSCEE-EEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC---------------------------------------
T ss_pred CCCCCeE-EEEecCccccccCCCCCeEEEEECCCCc-EEEe---------------------------------------
Confidence 9999865 555554 489999987643 1111
Q ss_pred CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee---ee--
Q 013545 269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV---NF-- 343 (441)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~---~~-- 343 (441)
..|...+..++|+|||++|+.++.++..++|+......... ..
T Consensus 468 --------------------------------~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1045)
T 1k32_A 468 --------------------------------TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 515 (1045)
T ss_dssp --------------------------------SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEE
T ss_pred --------------------------------eCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEE
Confidence 12334467789999999999999988888887543211000 00
Q ss_pred ----------------------------------eeEEeccCcceEEEeeCCCcEEEEe------------C--CCceEE
Q 013545 344 ----------------------------------ETVRLQTSKPIQLATTQDPAVVFVP------------C--MTAVKA 375 (441)
Q Consensus 344 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~ 375 (441)
..+.........+++++++..+++. . ...+..
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~ 595 (1045)
T 1k32_A 516 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 595 (1045)
T ss_dssp EESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEE
T ss_pred EEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEE
Confidence 0000011223456778888766651 1 236778
Q ss_pred EEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 376 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 376 wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
||+.+++.. .+. ..+..++|||||++|++++.| .|++|++.+++
T Consensus 596 ~d~~~~~~~-~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 596 YDVKTRKVT-EVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EETTTCCEE-EEE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred EECCCCcEE-Eee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 888888753 333 568999999999999999877 89999998876
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=5.6e-20 Score=191.35 Aligned_cols=282 Identities=11% Similarity=0.060 Sum_probs=186.5
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
..|.+++|+|+ + +++.+ .|++|++||+.+++.. . ...|...+.++.|+| |+++|+++
T Consensus 82 ~~v~~~~~spd-~-~~~~~-~~~~i~~~d~~~~~~~------------~------l~~~~~~~~~~~~Sp-dG~~la~~- 138 (706)
T 2z3z_A 82 FPSFRTLDAGR-G-LVVLF-TQGGLVGFDMLARKVT------------Y------LFDTNEETASLDFSP-VGDRVAYV- 138 (706)
T ss_dssp CCCEEEEETTT-T-EEEEE-ETTEEEEEETTTTEEE------------E------EECCTTCCTTCEECT-TSSEEEEE-
T ss_pred cCceeEEECCC-C-eEEEE-ECCEEEEEECCCCceE------------E------ccCCcccccCCcCCC-CCCEEEEE-
Confidence 56999999975 5 44444 4599999999765321 0 012444566778887 78899885
Q ss_pred CCCcEEEEECCC-----CeEEEEEecCCe---------------eEEEeeccCCCCccEEEEEe----------------
Q 013545 124 YDHYVKVWDTNC-----TRVVMNFKMPGK---------------VYRTAMSPLAASHMLIAAGT---------------- 167 (441)
Q Consensus 124 ~D~~i~iWd~~~-----~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~las~s---------------- 167 (441)
.|++|++||+.+ ++.......... +..+.++|++ ..|++++
T Consensus 139 ~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg---~~la~~~~d~~~~~~~~~~~~~~ 215 (706)
T 2z3z_A 139 RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG---SCLAFYRMDQSMVKPTPIVDYHP 215 (706)
T ss_dssp ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS---SEEEEEEEECTTSCCEEEEECCS
T ss_pred ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC---CEEEEEEECCCCCceEEeeccCC
Confidence 789999999988 765432222211 3567788864 3566665
Q ss_pred -----------------CCCcEEEEECCCCceeeee--cCCCCCeEEEEEecCCCcEEEEeecCC-----cEEEEEcCCC
Q 013545 168 -----------------EDVQVRLCDIASGAISQTL--SGHRDGIMTVEWSTSSEWILVTGGCDG-----AIRFWDIRRA 223 (441)
Q Consensus 168 -----------------~d~~I~vwdl~~~~~~~~l--~~h~~~v~~v~fsp~~~~~l~s~s~Dg-----~I~iWD~~~~ 223 (441)
.+..|++||+++++..... ..|...+.+++|+|+++. |++++.|+ .|++||+.++
T Consensus 216 ~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 216 LEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI-LYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp SSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE-EEEEEECTTSCEEEEEEEETTTC
T ss_pred CCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE-EEEEEeCCCCCeeEEEEEECCCC
Confidence 3467999999998865443 257778999999999985 56666665 8999999876
Q ss_pred ceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceee
Q 013545 224 GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH 303 (441)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 303 (441)
.....+.... ....
T Consensus 295 ~~~~~~~~~~------------------------------------------------------------------~~~~ 308 (706)
T 2z3z_A 295 RFVRTLFVET------------------------------------------------------------------DKHY 308 (706)
T ss_dssp CEEEEEEEEE------------------------------------------------------------------CSSC
T ss_pred ceeeEEEEcc------------------------------------------------------------------CCCe
Confidence 3322210000 0000
Q ss_pred ccCeEEEEEcc--CCCEEEEeecCCcEEEeeCC-CCCceeeeeeeEEeccCcceE-EEeeCCCcEEEEeCC-C-----ce
Q 013545 304 YGAVTGLKVTE--DGMYLLSAGSDSRIRLWDVE-SGRNTLVNFETVRLQTSKPIQ-LATTQDPAVVFVPCM-T-----AV 373 (441)
Q Consensus 304 ~~~v~~l~~s~--dg~~l~sgs~D~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~-----~~ 373 (441)
...+.+++|+| ||++|++++.|++++||.+. ++.. . ..+......... +++++++..++..+. . .+
T Consensus 309 ~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~-~---~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 309 VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL-I---RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF 384 (706)
T ss_dssp CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE-E---EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE-E---EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence 11235678999 99999999999999999876 3321 1 111111112223 688999987765533 2 45
Q ss_pred EEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC----CcEEEeCCCCCC
Q 013545 374 KAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND----RQILVWCPSRHI 424 (441)
Q Consensus 374 ~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D----~~i~vW~~~~~~ 424 (441)
..||+.+++ ...+. |...+.+++|||||++|+....+ ..|.+|++.++.
T Consensus 385 ~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 385 YCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 555666665 34444 67789999999999998865443 459999998775
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=5.4e-20 Score=187.21 Aligned_cols=270 Identities=10% Similarity=0.026 Sum_probs=182.1
Q ss_pred CCceeEEEccCCCCcEEEEeeC-CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGAS-DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 121 (441)
...|++++|+| ||++||+++. ||+++||++.++... +....|...|..+.|+| | .++++
T Consensus 21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~-----------------~lt~~~~~~~~~~~~sp-d-~~l~~ 80 (582)
T 3o4h_A 21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETV-----------------KLNREPINSVLDPHYGV-G-RVILV 80 (582)
T ss_dssp HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEE-----------------ECCSSCCSEECEECTTC-S-EEEEE
T ss_pred ccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcE-----------------eeecccccccccccCCC-C-eEEEE
Confidence 35799999997 5788999887 999999997543210 11112335788888886 5 67777
Q ss_pred EeC---CCcEEEEECCC---CeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEE
Q 013545 122 GSY---DHYVKVWDTNC---TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT 195 (441)
Q Consensus 122 gs~---D~~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~ 195 (441)
++. +...++|.+.. +... .+..........+++++. ..++++++. +.+.+||+++++.......+ . .+
T Consensus 81 ~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~-~~~~~s~~~-~~~~l~d~~~g~~~~l~~~~-~--~~ 154 (582)
T 3o4h_A 81 RDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGE-AVVFTGATE-DRVALYALDGGGLRELARLP-G--FG 154 (582)
T ss_dssp EECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSS-CEEEEEECS-SCEEEEEEETTEEEEEEEES-S--CE
T ss_pred eccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCC-eEEEEecCC-CCceEEEccCCcEEEeecCC-C--ce
Confidence 775 56667765432 2222 222222334557777653 334555554 45569999998765544433 3 88
Q ss_pred EEEecCCCcEEEEeecC----CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 196 VEWSTSSEWILVTGGCD----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 196 v~fsp~~~~~l~s~s~D----g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
++|+|||+. +++++.| +.|++||+.+++...
T Consensus 155 ~~~spDG~~-la~~~~~~~~~~~i~~~d~~~g~~~~-------------------------------------------- 189 (582)
T 3o4h_A 155 FVSDIRGDL-IAGLGFFGGGRVSLFTSNLSSGGLRV-------------------------------------------- 189 (582)
T ss_dssp EEEEEETTE-EEEEEEEETTEEEEEEEETTTCCCEE--------------------------------------------
T ss_pred EEECCCCCE-EEEEEEcCCCCeEEEEEcCCCCCceE--------------------------------------------
Confidence 999999985 5666666 789999987643211
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC--cEEEeeCCCCCceeeeeeeEEec
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS--RIRLWDVESGRNTLVNFETVRLQ 349 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~--~i~~wd~~~~~~~~~~~~~~~~~ 349 (441)
+..|.+.+..++|||||+.|++++.|+ +|++||+.+++.. .+. ..
T Consensus 190 ----------------------------l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~---~~ 236 (582)
T 3o4h_A 190 ----------------------------FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLE---LP 236 (582)
T ss_dssp ----------------------------ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECC---CS
T ss_pred ----------------------------eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--Ecc---CC
Confidence 123445678999999999999888898 8999999987643 111 11
Q ss_pred cCcceEEE--------eeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCc---EEE
Q 013545 350 TSKPIQLA--------TTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ---ILV 417 (441)
Q Consensus 350 ~~~~~~~~--------~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~---i~v 417 (441)
......++ +++|+.++++... +.+++|++ |+.... +.+.|.+++|+ |++++++++.+.+ +.+
T Consensus 237 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~ 310 (582)
T 3o4h_A 237 SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVS 310 (582)
T ss_dssp CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEcCCCCCCeEEE
Confidence 11122233 8999976666543 68999999 765553 34678999999 9999999888854 777
Q ss_pred eCCCC
Q 013545 418 WCPSR 422 (441)
Q Consensus 418 W~~~~ 422 (441)
|+..+
T Consensus 311 ~d~~~ 315 (582)
T 3o4h_A 311 LPSGE 315 (582)
T ss_dssp ETTCC
T ss_pred EcCCC
Confidence 77654
No 143
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=8e-19 Score=166.42 Aligned_cols=251 Identities=9% Similarity=0.087 Sum_probs=163.5
Q ss_pred cceeEEEEeeCCCCEEEEEeC---CCcEEEEECCCCeE--EEEE-ecCCeeEEEeeccCCCCccEEEEEe-CCCcEEEEE
Q 013545 104 YAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNCTRV--VMNF-KMPGKVYRTAMSPLAASHMLIAAGT-EDVQVRLCD 176 (441)
Q Consensus 104 ~~V~~~~~~~~~~~~l~sgs~---D~~i~iWd~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~las~s-~d~~I~vwd 176 (441)
..+..++++| ++. +++++. ++.|.+||+.++.. +..+ .....+..+++++++. +|++++ .++.|.+|+
T Consensus 40 ~~p~~~a~sp-dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~---~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 40 QNPTYLALSA-KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ---LVYSANYHKGTAEVMK 114 (347)
T ss_dssp SCCCCEEECT-TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT---EEEEEETTTTEEEEEE
T ss_pred CCcceEEEcc-CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC---EEEEEeCCCCEEEEEE
Confidence 4455678877 676 544443 68999999977763 3332 2334556778887643 455555 788999999
Q ss_pred CC-CCc--eeeeecC---------CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccc
Q 013545 177 IA-SGA--ISQTLSG---------HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLK 244 (441)
Q Consensus 177 l~-~~~--~~~~l~~---------h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (441)
+. ++. .+..+.. +...+.+++|+|+++ ++++...++.|++||+...+.+......
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~------------ 181 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVL------------ 181 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEE------------
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeE------------
Confidence 95 333 2222221 223488999999998 7888888899999998732111100000
Q ss_pred ccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-Eee
Q 013545 245 RKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAG 323 (441)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs 323 (441)
.......+..++|+|||++|+ ++.
T Consensus 182 -------------------------------------------------------~~~~g~~p~~~~~spdg~~l~v~~~ 206 (347)
T 3hfq_A 182 -------------------------------------------------------TMEAGFGPRHLVFSPDGQYAFLAGE 206 (347)
T ss_dssp -------------------------------------------------------ECCTTCCEEEEEECTTSSEEEEEET
T ss_pred -------------------------------------------------------EcCCCCCCceEEECCCCCEEEEEeC
Confidence 000011356799999999655 467
Q ss_pred cCCcEEEeeCCCCCceeeeeeeEEecc------CcceEEEeeCCCcEEEEeC--CCceEEEEccC---CceEeeeccccc
Q 013545 324 SDSRIRLWDVESGRNTLVNFETVRLQT------SKPIQLATTQDPAVVFVPC--MTAVKAFDIWS---GKTCLTFRGHYE 392 (441)
Q Consensus 324 ~D~~i~~wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~---~~~~~~l~gh~~ 392 (441)
.+++|++|++................. ..+..+++++++..+++.+ ...+.+|++.. .+.+..+..|..
T Consensus 207 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~ 286 (347)
T 3hfq_A 207 LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD 286 (347)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS
T ss_pred CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC
Confidence 789999999875222221111111111 2355688999999876543 46899999962 245566777777
Q ss_pred ceEEEEEcCCCCeEEEeecC-CcEEEe--CCCCCCCCC
Q 013545 393 YVNCCCFSSQDQELYTGGND-RQILVW--CPSRHISDG 427 (441)
Q Consensus 393 ~v~~v~fspd~~~l~s~s~D-~~i~vW--~~~~~~~~~ 427 (441)
.+.+++|+|||++|++++.+ +.|.+| +..++++..
T Consensus 287 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 287 FPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp CCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 78999999999998887764 899999 766776553
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=8.2e-19 Score=164.99 Aligned_cols=235 Identities=8% Similarity=0.085 Sum_probs=169.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-eeeecCCCCCe
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGI 193 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~~~l~~h~~~v 193 (441)
.+..+++++.+++|++||+.+++.+..+..+.....+.+++++ ..+++++..++.|.+||+++++. ...+..+....
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDC--SNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM 86 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSS--CEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCC--CEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence 3445788999999999999999988777754433377788764 24555556688999999999987 77777777766
Q ss_pred EEEEEecCCCcEEEEeecC-C--cEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545 194 MTVEWSTSSEWILVTGGCD-G--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG 270 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~D-g--~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (441)
.+++|+|+++++ +++..+ + .|++||+.+++....+.
T Consensus 87 ~~~~~s~dg~~l-~~~~~~~~~~~i~v~d~~~~~~~~~~~---------------------------------------- 125 (331)
T 3u4y_A 87 ADVDITPDDQFA-VTVTGLNHPFNMQSYSFLKNKFISTIP---------------------------------------- 125 (331)
T ss_dssp CCEEECTTSSEE-EECCCSSSSCEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred cceEECCCCCEE-EEecCCCCcccEEEEECCCCCeEEEEE----------------------------------------
Confidence 669999999865 455544 3 89999998765433221
Q ss_pred ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCc-EEEeeCCCCCceeeeeeeEEe
Q 013545 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSR-IRLWDVESGRNTLVNFETVRL 348 (441)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~-i~~wd~~~~~~~~~~~~~~~~ 348 (441)
+...+.+++|+|||++|+ +...++. |++|++...............
T Consensus 126 --------------------------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 173 (331)
T 3u4y_A 126 --------------------------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS 173 (331)
T ss_dssp --------------------------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC
T ss_pred --------------------------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc
Confidence 112357899999998554 5566688 999999864322111111112
Q ss_pred ccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCce---EeeecccccceEEEEEcCCCCeEEE-eecCCcEEEeCCCC
Q 013545 349 QTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKT---CLTFRGHYEYVNCCCFSSQDQELYT-GGNDRQILVWCPSR 422 (441)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~---~~~l~gh~~~v~~v~fspd~~~l~s-~s~D~~i~vW~~~~ 422 (441)
....+..+++++++..+++.+ ...+.+||+.+++. +..+..+ ..+.+++|+|||++|+. ...++.|.+|++.+
T Consensus 174 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 174 GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 234567789999998766654 36799999999988 7777754 56789999999997764 44578899999988
Q ss_pred CCC
Q 013545 423 HIS 425 (441)
Q Consensus 423 ~~~ 425 (441)
++.
T Consensus 253 ~~~ 255 (331)
T 3u4y_A 253 GTL 255 (331)
T ss_dssp TEE
T ss_pred Cce
Confidence 765
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=6.7e-19 Score=166.83 Aligned_cols=242 Identities=13% Similarity=0.101 Sum_probs=179.3
Q ss_pred ceeEEEEeeCCCCEEEEEeC-------CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEEC
Q 013545 105 AISSAIWYPVDTGLFVTGSY-------DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~sgs~-------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl 177 (441)
.+..+.+++ ++++++.++. +++|.+||..+++.+..+........+.+++++ ..+++++..++.|.+||+
T Consensus 42 ~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 42 GAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTT--QTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp SEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTT--TEEEEEETTTTEEEEEET
T ss_pred CccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCC--CEEEEEecCCCEEEEEeC
Confidence 455677776 6777777664 568999999999988888776666677777754 346666677899999999
Q ss_pred CCCceeeeecCCCCC---------eEEEEEecCCCcEEEEe-ecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccc
Q 013545 178 ASGAISQTLSGHRDG---------IMTVEWSTSSEWILVTG-GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKS 247 (441)
Q Consensus 178 ~~~~~~~~l~~h~~~---------v~~v~fsp~~~~~l~s~-s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (441)
++++.+..+..+... +.++.|+|+++.+++++ +.++.|.+||+.+++....+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~----------------- 181 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ----------------- 181 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-----------------
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-----------------
Confidence 999988777654432 68899999998766555 357899999998765433221
Q ss_pred cccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCc
Q 013545 248 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR 327 (441)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~ 327 (441)
.+...+.+++|+|+|++|++++.++.
T Consensus 182 ------------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~ 207 (353)
T 3vgz_A 182 ------------------------------------------------------NTGKMSTGLALDSEGKRLYTTNADGE 207 (353)
T ss_dssp ------------------------------------------------------CCCTTCCCCEEETTTTEEEEECTTSE
T ss_pred ------------------------------------------------------CCCCccceEEECCCCCEEEEEcCCCe
Confidence 01122456789999999999999999
Q ss_pred EEEeeCCCCCceeeeeeeEEe----ccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcC
Q 013545 328 IRLWDVESGRNTLVNFETVRL----QTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 401 (441)
Q Consensus 328 i~~wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp 401 (441)
|.+||+.+++... .... ....+..+++++++..+++.+. ..+.+||..+++....+..+.. .+++|+|
T Consensus 208 i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~ 281 (353)
T 3vgz_A 208 LITIDTADNKILS----RKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNP 281 (353)
T ss_dssp EEEEETTTTEEEE----EEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEET
T ss_pred EEEEECCCCeEEE----EEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECC
Confidence 9999999875321 1121 1223445789999987776643 6899999999998887765442 6799999
Q ss_pred CCCeEE-EeecCCcEEEeCCCCCCCC
Q 013545 402 QDQELY-TGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 402 d~~~l~-s~s~D~~i~vW~~~~~~~~ 426 (441)
||++++ +...++.|.+|+..+++..
T Consensus 282 dg~~l~v~~~~~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 282 ARNEAYVTHRQAGKVSVIDAKSYKVV 307 (353)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCEEEEEECCCCeEEEEECCCCeEE
Confidence 999665 4557899999999877644
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.83 E-value=3.6e-18 Score=160.90 Aligned_cols=282 Identities=11% Similarity=0.136 Sum_probs=176.7
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCC-CcEEEEECC--CCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASD-SSVAVYDVQ--RATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~D-g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
.+|...+.+++|+| ++++|++++.+ +.|++|++. ++.. ..+... ..+. .+..+.++| ++
T Consensus 34 ~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~-----~~~~-~~~~~~~s~-dg 95 (343)
T 1ri6_A 34 VDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGAL----------TFAAES-----ALPG-SLTHISTDH-QG 95 (343)
T ss_dssp EECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE----------EEEEEE-----ECSS-CCSEEEECT-TS
T ss_pred EecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCce----------eecccc-----ccCC-CCcEEEEcC-CC
Confidence 35778899999997 57778777776 999999986 3221 001111 1122 567788876 67
Q ss_pred CEEEEEe-CCCcEEEEECC---CCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-Cceee----eec
Q 013545 117 GLFVTGS-YDHYVKVWDTN---CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQ----TLS 187 (441)
Q Consensus 117 ~~l~sgs-~D~~i~iWd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~----~l~ 187 (441)
+++++++ .++.|.+||+. ....+..+.....+..+.+++++. .+++++..++.|++||+.+ ++... .+.
T Consensus 96 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 173 (343)
T 1ri6_A 96 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR--TLWVPALKQDRICLFTVSDDGHLVAQDPAEVT 173 (343)
T ss_dssp SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS--EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred CEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCC--EEEEecCCCCEEEEEEecCCCceeeecccccc
Confidence 7776655 48899999994 334444554445566777887542 3444444889999999987 65432 223
Q ss_pred C-CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545 188 G-HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS 265 (441)
Q Consensus 188 ~-h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (441)
. ....+.+++|+|+++++++++..++.|++||+.... .+......
T Consensus 174 ~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~--------------------------------- 220 (343)
T 1ri6_A 174 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL--------------------------------- 220 (343)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE---------------------------------
T ss_pred cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec---------------------------------
Confidence 2 345788999999998776777789999999985311 00000000
Q ss_pred CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceeeeee
Q 013545 266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNFE 344 (441)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~~~~ 344 (441)
..... .......+..++|+|+|++|+ ++..|+.|++||+...........
T Consensus 221 ---------------------~~~~~--------~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 221 ---------------------DMMPE--------NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp ---------------------ECSCT--------TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred ---------------------cccCc--------cccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence 00000 000123467899999998776 556899999999983211112122
Q ss_pred eEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEc--cCCce--EeeecccccceEEEEEcCCCCe
Q 013545 345 TVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDI--WSGKT--CLTFRGHYEYVNCCCFSSQDQE 405 (441)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~--~~~~~--~~~l~gh~~~v~~v~fspd~~~ 405 (441)
.... ...+..+++++++..+++++. ..+.+|++ .+++. +..+... ....+++|.|+.+.
T Consensus 272 ~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 272 FQPT-ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEGG 336 (343)
T ss_dssp EEEC-SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC--
T ss_pred eecC-CCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccCC
Confidence 2222 233677899999998888763 68999955 45543 3344432 44678888887543
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=1.3e-18 Score=164.37 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=166.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC---
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH--- 189 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h--- 189 (441)
++.++++++.|++|++||+.+++.+..+..+. ....+.+++++ ..+++++..++.|.+||+++++....+..+
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~ 87 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN--RTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP 87 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEESCCST
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCC--CEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc
Confidence 56789999999999999999999888887765 56677888764 345666677899999999999887766532
Q ss_pred ---CCCeEEEEEecCCCcEEEEeecC------------CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545 190 ---RDGIMTVEWSTSSEWILVTGGCD------------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS 254 (441)
Q Consensus 190 ---~~~v~~v~fsp~~~~~l~s~s~D------------g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (441)
...+.+++|+|+++++ ++++.+ +.|.+||+.+++....+.
T Consensus 88 ~~~~~~~~~~~~spdg~~l-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~------------------------ 142 (349)
T 1jmx_B 88 GEVGRSMYSFAISPDGKEV-YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR------------------------ 142 (349)
T ss_dssp TEEEECSSCEEECTTSSEE-EEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE------------------------
T ss_pred ccccccccceEECCCCCEE-EEEcccccccccccccCCCeEEEEECCCccccceee------------------------
Confidence 2337889999999865 555544 899999987532110000
Q ss_pred CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCC
Q 013545 255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~ 334 (441)
...+...+.+++|+|||+ ++.++. .|++||+.
T Consensus 143 ---------------------------------------------~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~ 174 (349)
T 1jmx_B 143 ---------------------------------------------TFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVK 174 (349)
T ss_dssp ---------------------------------------------EEECCSSCCCEEECTTSC-EEEESS--SEEEECTT
T ss_pred ---------------------------------------------eccCCCcccceeECCCCc-EEEccC--cEEEEeCC
Confidence 001122467788999999 554443 49999998
Q ss_pred CCCceeeeeee-------------------------------EEec----------------------------------
Q 013545 335 SGRNTLVNFET-------------------------------VRLQ---------------------------------- 349 (441)
Q Consensus 335 ~~~~~~~~~~~-------------------------------~~~~---------------------------------- 349 (441)
+++.... +.. ....
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
T 1jmx_B 175 TGKYTVA-LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL 253 (349)
T ss_dssp TCCEEEE-ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEEC
T ss_pred CCceecc-ccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccC
Confidence 7653211 100 0000
Q ss_pred cCcceEEEeeC-CCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 350 TSKPIQLATTQ-DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 350 ~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
...+..+++++ ++..++++ ...+.+||+.+++....+..+ ..+.+++|+|||++|++++.++.|++|++.+++..
T Consensus 254 ~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 254 TELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp SSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred CCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 01223455668 88888877 778999999999888777643 34789999999999998888999999999887643
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.83 E-value=1.3e-18 Score=188.91 Aligned_cols=277 Identities=12% Similarity=0.114 Sum_probs=201.6
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
+.+|.+.|.++.|++ + .++++++.|++++||.+...... . .....|. .+....++| |+..
T Consensus 199 l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~-----~-----------~~l~~~~-~~~~~~~Sp-DG~~ 258 (1045)
T 1k32_A 199 IVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKD-----L-----------RKHTSFT-DYYPRHLNT-DGRR 258 (1045)
T ss_dssp EECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCS-----C-----------EECCCCC-SSCEEEEEE-SSSC
T ss_pred CcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCc-----c-----------eEecCCC-CcceeeEcC-CCCE
Confidence 378999999999985 3 67788889999999986431100 0 0011232 344566776 7888
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecC------------CeeEEEeec-cCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFKMP------------GKVYRTAMS-PLAASHMLIAAGTEDVQVRLCDIASGAISQT 185 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~las~s~d~~I~vwdl~~~~~~~~ 185 (441)
++++ .|+.|.+||+..... ..+... +.+..+.++ |++ ..|++++ ++.|.+|++.+++.. .
T Consensus 259 la~~-~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG---~~la~~~-~~~i~~~~~~~~~~~-~ 331 (1045)
T 1k32_A 259 ILFS-KGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDG---DLIAFVS-RGQAFIQDVSGTYVL-K 331 (1045)
T ss_dssp EEEE-ETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGG---GCEEEEE-TTEEEEECTTSSBEE-E
T ss_pred EEEE-eCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCC---CEEEEEE-cCEEEEEcCCCCceE-E
Confidence 8887 489999999954443 333321 146678888 764 3466555 789999999888754 4
Q ss_pred ecCCCC-CeEEEEEecCCCcEEEEeecCCcEE-EEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545 186 LSGHRD-GIMTVEWSTSSEWILVTGGCDGAIR-FWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK 263 (441)
Q Consensus 186 l~~h~~-~v~~v~fsp~~~~~l~s~s~Dg~I~-iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (441)
+..|.. .+..++|+ +++. |+.++.++.+. +||+..+....
T Consensus 332 ~~~~~~~~~~~~~~s-dg~~-l~~~s~~~~l~~~~d~~~~~~~~------------------------------------ 373 (1045)
T 1k32_A 332 VPEPLRIRYVRRGGD-TKVA-FIHGTREGDFLGIYDYRTGKAEK------------------------------------ 373 (1045)
T ss_dssp CSCCSCEEEEEECSS-SEEE-EEEEETTEEEEEEEETTTCCEEE------------------------------------
T ss_pred ccCCCcceEEeeeEc-CCCe-EEEEECCCceEEEEECCCCCceE------------------------------------
Confidence 667777 89999999 8875 56777777777 88876432110
Q ss_pred ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee
Q 013545 264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF 343 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~ 343 (441)
...|...+..++|||||++|++++.|++|++||+.+++....
T Consensus 374 ------------------------------------l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~-- 415 (1045)
T 1k32_A 374 ------------------------------------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI-- 415 (1045)
T ss_dssp ------------------------------------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--
T ss_pred ------------------------------------ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe--
Confidence 013445688999999999999999999999999998763221
Q ss_pred eeEEeccCcceEEEeeCCCcEEEEeCC-----------CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecC
Q 013545 344 ETVRLQTSKPIQLATTQDPAVVFVPCM-----------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 412 (441)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D 412 (441)
...+......++++||+..+++.+. ..+++||+.+++ ...+.+|...+.+++|+|||++|+.++.+
T Consensus 416 --~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 416 --ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYR 492 (1045)
T ss_dssp --EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred --ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence 1122334467889999998776543 379999998887 77888899999999999999999999998
Q ss_pred CcEEEeCCC
Q 013545 413 RQILVWCPS 421 (441)
Q Consensus 413 ~~i~vW~~~ 421 (441)
+..++|+..
T Consensus 493 ~~~~~~~~~ 501 (1045)
T 1k32_A 493 SLDPSPDRV 501 (1045)
T ss_dssp CCCCEECSS
T ss_pred cCCcCcchh
Confidence 888888754
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=1.8e-18 Score=180.46 Aligned_cols=280 Identities=9% Similarity=0.014 Sum_probs=183.5
Q ss_pred ccceeeecCCCC---ceeEEEccCCCCcEEEEeeCC---------CcEEEEECCCCcccCCCCceeccceeEEeeccccc
Q 013545 33 SNYKEIVSPHKG---SINSLQVDLTEERYLLSGASD---------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH 100 (441)
Q Consensus 33 ~~~~~~~~~H~~---~V~~l~~s~~~~~~l~s~s~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (441)
.+...++.+|.. .|.+++||| ++++|++++.| +.|.+||+.++.... + ....
T Consensus 47 g~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----l-----------~~~~ 110 (723)
T 1xfd_A 47 NTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS----L-----------DPPE 110 (723)
T ss_dssp CCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE----C-----------CCTT
T ss_pred CcEEEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceEe----c-----------cCCc
Confidence 333455666765 499999997 58899999875 778899998764210 0 1112
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-C------------------eeEEEeeccCCCCcc
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-G------------------KVYRTAMSPLAASHM 161 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~ 161 (441)
+|...+..+.|+| ||+.||.++. ++|++||+.+++........ . .+..+.|+|++.
T Consensus 111 ~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~--- 185 (723)
T 1xfd_A 111 VSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT--- 185 (723)
T ss_dssp CCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS---
T ss_pred cccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC---
Confidence 4555577778887 7889999886 79999999888765443321 1 125678888653
Q ss_pred EEEEEeCCC----------------------------------cEEEEECCCCceeeeecCC------CCCeEEEEEecC
Q 013545 162 LIAAGTEDV----------------------------------QVRLCDIASGAISQTLSGH------RDGIMTVEWSTS 201 (441)
Q Consensus 162 ~las~s~d~----------------------------------~I~vwdl~~~~~~~~l~~h------~~~v~~v~fsp~ 201 (441)
.|++++.|. .|++||+.+++....+..+ ...+.+++|+|+
T Consensus 186 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpD 265 (723)
T 1xfd_A 186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS 265 (723)
T ss_dssp EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS
T ss_pred EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCC
Confidence 565555332 7999999998865666654 667899999999
Q ss_pred CCcEEEEeec----CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcc
Q 013545 202 SEWILVTGGC----DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 277 (441)
Q Consensus 202 ~~~~l~s~s~----Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (441)
++. +++.+. +..|++||+.++++...+..
T Consensus 266 g~~-l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------------------------------------------- 298 (723)
T 1xfd_A 266 TKV-AVTWLNRAQNVSILTLCDATTGVCTKKHED---------------------------------------------- 298 (723)
T ss_dssp SEE-EEEEEETTSCEEEEEEEETTTCCEEEEEEE----------------------------------------------
T ss_pred CeE-EEEEEcCCCCeEEEEEEeCCCCcceEEEEe----------------------------------------------
Confidence 984 555443 35799999987655433211
Q ss_pred cccCCCCcccccCCCcccccccceeeccCe----EEEEEccCCCEEEE--eecCC------cEEEee-CCCCC---ceee
Q 013545 278 RIPAKGSVRQRLHPGMLSSQDRATAHYGAV----TGLKVTEDGMYLLS--AGSDS------RIRLWD-VESGR---NTLV 341 (441)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v----~~l~~s~dg~~l~s--gs~D~------~i~~wd-~~~~~---~~~~ 341 (441)
.+.+.+ ..++|+|||+.|+. +..|+ .|.+|| ..++. ...
T Consensus 299 ------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~- 353 (723)
T 1xfd_A 299 ------------------------ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS- 353 (723)
T ss_dssp ------------------------ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB-
T ss_pred ------------------------ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE-
Confidence 011111 25689999997764 45666 577777 34333 111
Q ss_pred eeeeEEeccCcce-EEEeeCCCcEEEEe-CC---CceEEEEccCC--ceEeeecc---cccceEEEEEcCCCCeEEEe
Q 013545 342 NFETVRLQTSKPI-QLATTQDPAVVFVP-CM---TAVKAFDIWSG--KTCLTFRG---HYEYVNCCCFSSQDQELYTG 409 (441)
Q Consensus 342 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~---~~~~~wd~~~~--~~~~~l~g---h~~~v~~v~fspd~~~l~s~ 409 (441)
+ ........ .+++++|+..++.. .. ..+++|++... .....+.+ |...+..++|||||++|+..
T Consensus 354 -l---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 354 -I---TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp -S---CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred -e---ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 1 00011112 25789999987654 33 56899998543 23445554 67789999999999988743
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=2.1e-18 Score=158.55 Aligned_cols=226 Identities=8% Similarity=0.023 Sum_probs=166.1
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-CceeeeecCC-CCCeEEEEE
Q 013545 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGH-RDGIMTVEW 198 (441)
Q Consensus 121 sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~l~~h-~~~v~~v~f 198 (441)
+++.|++|++||+.+++......+.+.+..+.++|++. +|++++ ++.|++||+++ ++....+.+| ...+.+++|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~---~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGK---YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSS---EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCC---EEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 45789999999999998877777777888999998653 666665 78999999999 8877766666 477899999
Q ss_pred ecCCCcEEEEee--cCCcEEEEEcCCCc-eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccC
Q 013545 199 STSSEWILVTGG--CDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 275 (441)
Q Consensus 199 sp~~~~~l~s~s--~Dg~I~iWD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (441)
+|+++. |++++ .++.++||.++... ....
T Consensus 93 spdg~~-l~~~~~~~~~~~~l~~~~~~~~~~~~----------------------------------------------- 124 (297)
T 2ojh_A 93 SPDGAL-YAISDKVEFGKSAIYLLPSTGGTPRL----------------------------------------------- 124 (297)
T ss_dssp CTTSSE-EEEEECTTTSSCEEEEEETTCCCCEE-----------------------------------------------
T ss_pred CCCCCE-EEEEEeCCCCcceEEEEECCCCceEE-----------------------------------------------
Confidence 999985 56666 44677777764210 0000
Q ss_pred cccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE-EeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545 276 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 354 (441)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 354 (441)
..+...+..++|+||+++|+ +++.|+.+++|++........ .+........
T Consensus 125 -------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~ 176 (297)
T 2ojh_A 125 -------------------------MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET---RLTHGEGRND 176 (297)
T ss_dssp -------------------------CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCSSSCEE
T ss_pred -------------------------eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce---EcccCCCccc
Confidence 00112377889999999887 788999999998643211111 1111234456
Q ss_pred EEEeeCCCcEEEEeC--CCceEEEEcc-CCceEeeecccccceEEEEEcCCCCeEEEeecC-----------CcEEEeCC
Q 013545 355 QLATTQDPAVVFVPC--MTAVKAFDIW-SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND-----------RQILVWCP 420 (441)
Q Consensus 355 ~~~~~~~~~~~~~~~--~~~~~~wd~~-~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D-----------~~i~vW~~ 420 (441)
.+.+++++..++..+ ...+++|++. .+.....+..|...+.+++|+|||++|+.++.| ..|.+|++
T Consensus 177 ~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 177 GPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred cceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence 788899998776654 4678999986 566778888899999999999999999988776 56999999
Q ss_pred CCCCCC
Q 013545 421 SRHISD 426 (441)
Q Consensus 421 ~~~~~~ 426 (441)
.++...
T Consensus 257 ~~~~~~ 262 (297)
T 2ojh_A 257 DGGNVE 262 (297)
T ss_dssp TSCSCE
T ss_pred CCCCce
Confidence 887653
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=5.6e-19 Score=172.85 Aligned_cols=203 Identities=11% Similarity=0.066 Sum_probs=144.2
Q ss_pred eeEEEEeeCCCCEEEEEeCCCcEEEEECCC-----------Ce-----EEEEEecCCeeEEEeeccCCCCccEEE----E
Q 013545 106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-----------TR-----VVMNFKMPGKVYRTAMSPLAASHMLIA----A 165 (441)
Q Consensus 106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~la----s 165 (441)
++.+++++ ++.++++++.|+ +++|+... .. ....+.+.+.+..++|++++ .+|+ +
T Consensus 39 ~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg---~~lav~~~s 113 (434)
T 2oit_A 39 SSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN---LTLSACMMS 113 (434)
T ss_dssp CBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS---CEEEEEEEE
T ss_pred ccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC---CEEEEEEec
Confidence 45566766 577899999987 89987421 01 11233445678899999864 3666 7
Q ss_pred EeCCCcEEEEECCCC--------ce---eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCc
Q 013545 166 GTEDVQVRLCDIASG--------AI---SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234 (441)
Q Consensus 166 ~s~d~~I~vwdl~~~--------~~---~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~ 234 (441)
|+.|+.|++||++++ +. +..+.+|...|.+++|+|++..+|++++.||+|++||++++.+...
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~------ 187 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA------ 187 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE------
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee------
Confidence 888999999998765 21 4567789999999999998545789999999999999986532110
Q ss_pred cccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc
Q 013545 235 QLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE 314 (441)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 314 (441)
..+|...|++++|+|
T Consensus 188 -----------------------------------------------------------------~~~~~~~v~~v~wsp 202 (434)
T 2oit_A 188 -----------------------------------------------------------------TLPSTVAVTSVCWSP 202 (434)
T ss_dssp -----------------------------------------------------------------EECGGGCEEEEEECT
T ss_pred -----------------------------------------------------------------ccCCCCceeEEEEcC
Confidence 123667899999999
Q ss_pred CCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccce
Q 013545 315 DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYV 394 (441)
Q Consensus 315 dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v 394 (441)
+|++|++|+.|++|++||++ ++.. ....... ..-..|...|
T Consensus 203 dg~~lasgs~dg~v~iwd~~-~~~~----~~~~~~~----------------------------------~~~~~~~~~v 243 (434)
T 2oit_A 203 KGKQLAVGKQNGTVVQYLPT-LQEK----KVIPCPP----------------------------------FYESDHPVRV 243 (434)
T ss_dssp TSSCEEEEETTSCEEEECTT-CCEE----EEECCCT----------------------------------TCCTTSCEEE
T ss_pred CCCEEEEEcCCCcEEEEccC-Cccc----ccccCCc----------------------------------ccCCCCceeE
Confidence 99999999999999999987 3211 0000000 0001355679
Q ss_pred EEEEEcCCCCeEEEe-ecCC------cEEEeCCCCC
Q 013545 395 NCCCFSSQDQELYTG-GNDR------QILVWCPSRH 423 (441)
Q Consensus 395 ~~v~fspd~~~l~s~-s~D~------~i~vW~~~~~ 423 (441)
.+++|++++.++++. ..|+ .+++|++...
T Consensus 244 ~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 244 LDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 999999999888643 3343 3899998754
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=4.3e-17 Score=155.40 Aligned_cols=253 Identities=10% Similarity=0.037 Sum_probs=161.2
Q ss_pred ccceeEEEEeeCCCCEEEEEeCC----CcEEEEECCC--CeE--EEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545 103 KYAISSAIWYPVDTGLFVTGSYD----HYVKVWDTNC--TRV--VMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVR 173 (441)
Q Consensus 103 ~~~V~~~~~~~~~~~~l~sgs~D----~~i~iWd~~~--~~~--~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~ 173 (441)
...+..++++| ++.+|++++.+ +.|.+|++.. +.. +...... .....+++ .+..++++...++.|.
T Consensus 49 ~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~ 123 (361)
T 3scy_A 49 VANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT----NGKNIVTANYSGGSIT 123 (361)
T ss_dssp CSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE----CSSEEEEEETTTTEEE
T ss_pred CCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE----CCCEEEEEECCCCEEE
Confidence 34455677776 78889998886 7999998764 443 2233322 23333444 2334555555788999
Q ss_pred EEECCCCceeeee------c--------CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCce------eeEe-ccC
Q 013545 174 LCDIASGAISQTL------S--------GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC------FRVL-DQS 232 (441)
Q Consensus 174 vwdl~~~~~~~~l------~--------~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~------~~~~-~~~ 232 (441)
+|++.....+..+ . .+...+.+++|+|+++++++++..++.|++|++..... +... ..
T Consensus 124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~- 202 (361)
T 3scy_A 124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP- 202 (361)
T ss_dssp EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE-
T ss_pred EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc-
Confidence 9999754332211 1 12334588999999987777776789999999864321 0000 00
Q ss_pred CccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEE
Q 013545 233 QSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV 312 (441)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 312 (441)
. .....+...+..++|
T Consensus 203 ------------------------------------------------------~----------~~~~~~~~~~~~~~~ 218 (361)
T 3scy_A 203 ------------------------------------------------------E----------AFKVAPGSGPRHLIF 218 (361)
T ss_dssp ------------------------------------------------------E----------EEECCTTCCEEEEEE
T ss_pred ------------------------------------------------------c----------ceecCCCCCCeEEEE
Confidence 0 000011223678999
Q ss_pred ccCCCEEEEee-cCCcEEEeeCCCCCceeeeeeeEEe---ccCcceEEEeeCCCcEEEEeCC---CceEEEEcc--CCc-
Q 013545 313 TEDGMYLLSAG-SDSRIRLWDVESGRNTLVNFETVRL---QTSKPIQLATTQDPAVVFVPCM---TAVKAFDIW--SGK- 382 (441)
Q Consensus 313 s~dg~~l~sgs-~D~~i~~wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~wd~~--~~~- 382 (441)
+|||+++++++ .+++|++||+.+++... ...... ....+..+++++|+..+++... ..+.+|++. +++
T Consensus 219 spdg~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~ 296 (361)
T 3scy_A 219 NSDGKFAYLINEIGGTVIAFRYADGMLDE--IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL 296 (361)
T ss_dssp CTTSSEEEEEETTTCEEEEEEEETTEEEE--EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE
T ss_pred cCCCCEEEEEcCCCCeEEEEEecCCceEE--eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE
Confidence 99999877666 68999999998654211 111111 1123457889999998866543 579999995 455
Q ss_pred -eEeeecccccceEEEEEcCCCCeEEEee-cCCcEEEe--CCCCCCCCCc
Q 013545 383 -TCLTFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVW--CPSRHISDGV 428 (441)
Q Consensus 383 -~~~~l~gh~~~v~~v~fspd~~~l~s~s-~D~~i~vW--~~~~~~~~~~ 428 (441)
.+..+.. ...+.+++|+|||++|++++ .++.|.+| ++.++++..+
T Consensus 297 ~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 297 TKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 3444444 45688999999999988877 57899995 6667765433
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=1e-18 Score=170.96 Aligned_cols=172 Identities=13% Similarity=0.147 Sum_probs=124.2
Q ss_pred CCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE-
Q 013545 42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV- 120 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~- 120 (441)
+...++.|++++. +.++++++.|+ ++||+........... .....+..........|...|.++.|++ ++.+|+
T Consensus 35 ~~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav 109 (434)
T 2oit_A 35 PKERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPG--DDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSA 109 (434)
T ss_dssp CCSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTT--CCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEE
T ss_pred CCCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccc--cCcccccccCccccccCCCcccEEEEcC-CCCEEEE
Confidence 3457899999964 56899999988 9999864221110000 0000000000001124567799999987 688998
Q ss_pred ---EEeCCCcEEEEECCCC--------eEEEEEe----cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545 121 ---TGSYDHYVKVWDTNCT--------RVVMNFK----MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT 185 (441)
Q Consensus 121 ---sgs~D~~i~iWd~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~ 185 (441)
+|+.|++|++||+.++ +.+..+. +.+.+.++.|+|.. ..+|++++.|+.|++||++++.....
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~--~~~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV--PSMVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC--TTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC--CCEEEEEECCCeEEEEEcCCCcceee
Confidence 8999999999998654 2222222 34668899999863 35899999999999999999977767
Q ss_pred ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
..+|...|.+++|+|++++ |++|+.||+|++||++
T Consensus 188 ~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTT
T ss_pred ccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccC
Confidence 7789999999999999985 7899999999999987
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=5.3e-18 Score=172.48 Aligned_cols=232 Identities=11% Similarity=0.046 Sum_probs=164.2
Q ss_pred cccceeEEEEeeCCCCEEEEEeC-CCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeC---CCcEEEEE
Q 013545 102 HKYAISSAIWYPVDTGLFVTGSY-DHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTE---DVQVRLCD 176 (441)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~sgs~-D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~---d~~I~vwd 176 (441)
+..+|.++.+++ ||++||+++. |++++||++.++......... ..+....++|+ .+++++.. +...++|.
T Consensus 20 ~~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd----~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 20 IAVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG----RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HHSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS----EEEEEEECSTTSCCEEEEE
T ss_pred hccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC----eEEEEeccCCCCcceEEEE
Confidence 345688888887 8999999887 999999999776654433333 35677777764 36666554 44556655
Q ss_pred CCC---CceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545 177 IAS---GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN 253 (441)
Q Consensus 177 l~~---~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (441)
+.. +... .+..+. .+...+|+|+++.++++++.++.+.+||+.++++....
T Consensus 95 ~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~------------------------ 148 (582)
T 3o4h_A 95 VNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA------------------------ 148 (582)
T ss_dssp EETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE------------------------
T ss_pred EeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee------------------------
Confidence 432 2222 333222 34466889988765455555556669998765432211
Q ss_pred CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC----CcEE
Q 013545 254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD----SRIR 329 (441)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D----~~i~ 329 (441)
.+.. .+++|||||++|++++.| .+|+
T Consensus 149 ------------------------------------------------~~~~--~~~~~spDG~~la~~~~~~~~~~~i~ 178 (582)
T 3o4h_A 149 ------------------------------------------------RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLF 178 (582)
T ss_dssp ------------------------------------------------EESS--CEEEEEEETTEEEEEEEEETTEEEEE
T ss_pred ------------------------------------------------cCCC--ceEEECCCCCEEEEEEEcCCCCeEEE
Confidence 1112 678999999999988887 7899
Q ss_pred EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-C--ceEEEEccCCceEeeecccccceEEEE--------
Q 013545 330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-T--AVKAFDIWSGKTCLTFRGHYEYVNCCC-------- 398 (441)
Q Consensus 330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~wd~~~~~~~~~l~gh~~~v~~v~-------- 398 (441)
+||+.+++... +..........+++||+..++.... + .+.+||+.+++.. .+.+|...+..++
T Consensus 179 ~~d~~~g~~~~-----l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 179 TSNLSSGGLRV-----FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLG 252 (582)
T ss_dssp EEETTTCCCEE-----ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEE
T ss_pred EEcCCCCCceE-----eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccccee
Confidence 99998876421 1222334467899999998885433 3 6899999998887 8889988888888
Q ss_pred EcCCCCeEEEeecCCcEEEeCC
Q 013545 399 FSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 399 fspd~~~l~s~s~D~~i~vW~~ 420 (441)
|||||+.+++++.|++++||++
T Consensus 253 ~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 253 YLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ECTTSCEEEEEEETTEEEEEET
T ss_pred EcCCCcEEEEEEcCCcEEEEEE
Confidence 9999988899999999999998
No 155
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=3.1e-17 Score=157.73 Aligned_cols=286 Identities=12% Similarity=0.055 Sum_probs=176.5
Q ss_pred ecCCCCceeE-----EEccCCCCcEEEEeeC-CCc--EEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEE
Q 013545 39 VSPHKGSINS-----LQVDLTEERYLLSGAS-DSS--VAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAI 110 (441)
Q Consensus 39 ~~~H~~~V~~-----l~~s~~~~~~l~s~s~-Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 110 (441)
++.|...+.. .+|+| ++++|+.++. ||. |.+||+.+++.. +...+|...+..+.
T Consensus 26 lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~-----------------~lt~~~~~~~~~~~ 87 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVAT-----------------QLTEGRGDNTFGGF 87 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEE-----------------ECCCSSCBCSSSCE
T ss_pred ecCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceE-----------------EeeeCCCCCccceE
Confidence 4566655555 78997 5778888887 774 777788765421 11123444443456
Q ss_pred EeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe-eEEEee--ccCCCCccEEEE----------------------
Q 013545 111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAM--SPLAASHMLIAA---------------------- 165 (441)
Q Consensus 111 ~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~las---------------------- 165 (441)
|+| |++.|+.++.++.|.+||+.+++.......+.. .....+ +++. .+++.
T Consensus 88 ~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg---~~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T 3pe7_A 88 LSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC---TKLVGIEIRREDWVPLTDWKKFHEFYF 163 (388)
T ss_dssp ECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS---SEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred EcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC---CeeccccccCcccccccccchhhhhhc
Confidence 766 899999999999999999999887665555433 222222 3332 23432
Q ss_pred EeCCCcEEEEECCCCceeeeecCCCCCeEEEEEec-CCCcEEEEeecC------CcEEEEEcCCCceeeEeccCCccccC
Q 013545 166 GTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST-SSEWILVTGGCD------GAIRFWDIRRAGCFRVLDQSQSQLGR 238 (441)
Q Consensus 166 ~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp-~~~~~l~s~s~D------g~I~iWD~~~~~~~~~~~~~~~~~~~ 238 (441)
...+..|.+||+++++.. .+..+...+..+.|+| +++.+ +.++.+ ..|.++|+..+.. ..+
T Consensus 164 ~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l-~~~~~~~~~~~~~~l~~~d~~~~~~-~~l--------- 231 (388)
T 3pe7_A 164 TKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTV-AFCHEGPHDLVDARMWLINEDGTNM-RKV--------- 231 (388)
T ss_dssp GCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEE-EEEECSCTTTSSCSEEEEETTSCCC-EES---------
T ss_pred cCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEE-EEEEecCCCCCcceEEEEeCCCCce-EEe---------
Confidence 223467999999998754 4445677889999999 88754 444432 2566666543210 000
Q ss_pred CCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeec--cCeEEEEEccCC
Q 013545 239 RPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY--GAVTGLKVTEDG 316 (441)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~s~dg 316 (441)
..+. ..+..++|+|||
T Consensus 232 --------------------------------------------------------------~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 232 --------------------------------------------------------------KTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp --------------------------------------------------------------CCCCTTEEEEEEEECTTS
T ss_pred --------------------------------------------------------------eeCCCCcccccceECCCC
Confidence 0011 236678899999
Q ss_pred CEEEEeecC-----CcEEEeeCCCCCceee-eeeeEEeccCcceEEEeeCCCcEEEEe----------CCCceEEEEccC
Q 013545 317 MYLLSAGSD-----SRIRLWDVESGRNTLV-NFETVRLQTSKPIQLATTQDPAVVFVP----------CMTAVKAFDIWS 380 (441)
Q Consensus 317 ~~l~sgs~D-----~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~wd~~~ 380 (441)
+.|+..+.+ .+|++||+.+++.... .+.........+....++||+..++.. ....+.+||+.+
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 987654432 2399999998864221 111000000001112567787765542 234789999988
Q ss_pred CceEeeeccccc-----------ceEEEEEcCCCCeEEEee-cCCcEEEeCCC
Q 013545 381 GKTCLTFRGHYE-----------YVNCCCFSSQDQELYTGG-NDRQILVWCPS 421 (441)
Q Consensus 381 ~~~~~~l~gh~~-----------~v~~v~fspd~~~l~s~s-~D~~i~vW~~~ 421 (441)
++. ..+..|.. .+.+++|||||++|+.++ .++...||.++
T Consensus 330 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 330 GTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp TEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred Cce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 764 55666666 588999999999988655 57888888654
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.78 E-value=1.3e-16 Score=149.79 Aligned_cols=252 Identities=10% Similarity=0.001 Sum_probs=169.5
Q ss_pred ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe-
Q 013545 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS- 123 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs- 123 (441)
.+..++|+|++..++++++.++.|.+||+.+++... .+.. .....|...+..+.+++ +++++++++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~----------~~~~--~~~~~~~~~~~~~~~s~-dg~~l~~~~~ 101 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG----------RIDL--STPEERVKSLFGAALSP-DGKTLAIYES 101 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE----------EEEC--CBTTEEEECTTCEEECT-TSSEEEEEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe----------eEEc--CCcccccccccceEECC-CCCEEEEEec
Confidence 488999997533456777888999999997654210 0100 00001223455677776 788888876
Q ss_pred -----------CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCC
Q 013545 124 -----------YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG 192 (441)
Q Consensus 124 -----------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~ 192 (441)
.|+.|.+||+.+++.+..+.....+..+.+++++. .|+++ ++.|.+||+++++....+..+...
T Consensus 102 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~ 176 (337)
T 1pby_B 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS---KLYGL--GRDLHVMDPEAGTLVEDKPIQSWE 176 (337)
T ss_dssp EEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS---CEEEE--SSSEEEEETTTTEEEEEECSTTTT
T ss_pred ccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCC---EEEEe--CCeEEEEECCCCcEeeeeeccccC
Confidence 67999999999999888777666666777887643 34444 688999999999887776644311
Q ss_pred eEEEEEecCCCcEEEEeecCCc-----------------------EEEEEcCCCceeeEeccCCccccCCCCcccccccc
Q 013545 193 IMTVEWSTSSEWILVTGGCDGA-----------------------IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLS 249 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~Dg~-----------------------I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (441)
..+.|+|+++.+++++..++. |.+||+.+++.. .+
T Consensus 177 -~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~-------------------- 234 (337)
T 1pby_B 177 -AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MR-------------------- 234 (337)
T ss_dssp -TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EE--------------------
T ss_pred -CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Ee--------------------
Confidence 123789998866555444443 345555433211 00
Q ss_pred cCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEE
Q 013545 250 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIR 329 (441)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~ 329 (441)
....+...+.+++|+|||++|+++ +++|+
T Consensus 235 -------------------------------------------------~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~ 263 (337)
T 1pby_B 235 -------------------------------------------------EVRIMDVFYFSTAVNPAKTRAFGA--YNVLE 263 (337)
T ss_dssp -------------------------------------------------EEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred -------------------------------------------------ecCCCCCceeeEEECCCCCEEEEe--CCeEE
Confidence 011233457789999999999888 79999
Q ss_pred EeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccccc
Q 013545 330 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYE 392 (441)
Q Consensus 330 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~ 392 (441)
+||+.+++.. .... ....+..+++++++..+++++. ..+.+||+.+++.+..+..+..
T Consensus 264 ~~d~~~~~~~----~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 264 SFDLEKNASI----KRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EEETTTTEEE----EEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred EEECCCCcCc----ceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 9999876532 1111 2345677899999998777654 6899999999998888766544
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=179.39 Aligned_cols=317 Identities=12% Similarity=0.060 Sum_probs=180.1
Q ss_pred EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccc---ceeEEEEeeCCCCEEEEEeC
Q 013545 48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY---AISSAIWYPVDTGLFVTGSY 124 (441)
Q Consensus 48 ~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~~l~sgs~ 124 (441)
+++|+| +++++++ +.|++|++||+.++... ... .+|.. .|.++.|+| ||++|++++.
T Consensus 20 ~~~~s~-dg~~~~~-~~d~~i~~~~~~~g~~~------------~~~-----~~~~~~~~~~~~~~~Sp-Dg~~la~~~~ 79 (719)
T 1z68_A 20 FPNWIS-GQEYLHQ-SADNNIVLYNIETGQSY------------TIL-----SNRTMKSVNASNYGLSP-DRQFVYLESD 79 (719)
T ss_dssp CCEESS-SSEEEEE-CTTSCEEEEESSSCCEE------------EEE-----CHHHHHTTTCSEEEECT-TSSEEEEEEE
T ss_pred ccEECC-CCeEEEE-cCCCCEEEEEcCCCcEE------------EEE-----ccccccccceeeEEECC-CCCeEEEEec
Confidence 678987 4665555 46999999999876421 011 12322 377888887 8999998877
Q ss_pred ---------CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee-cCCCCCe-
Q 013545 125 ---------DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHRDGI- 193 (441)
Q Consensus 125 ---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l-~~h~~~v- 193 (441)
|++|++||+.+++.+....+...+..+.++|++. .||.+. ++.|++||+.+++..+.. .++...|
T Consensus 80 ~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~---~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~ 155 (719)
T 1z68_A 80 YSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGS---KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIF 155 (719)
T ss_dssp EEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTT---CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEE
T ss_pred CceeEEeecceEEEEEECCCCccccceecCcccccceECCCCC---EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeE
Confidence 7999999999988632123345577788998754 566664 789999999988765432 3443322
Q ss_pred ----------------EEEEEecCCCcEEEEeecC-CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCc
Q 013545 194 ----------------MTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSV 256 (441)
Q Consensus 194 ----------------~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (441)
.+++|+|||+. |++++.| +.+++|.+..... ... +.........
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~-la~~~~d~~~~~~~~~~~~~~-----~~~-------~~~~~~~yp~------ 216 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGKF-LAYAEFNDTDIPVIAYSYYGD-----EQY-------PRTINIPYPK------ 216 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSSE-EEEEEEECTTSCEEEEEECCS-----SSS-------CEEEEEECCB------
T ss_pred cccccceeeeecccCcccEEECCCCCE-EEEEEECCCCCceEEeeccCC-----CCC-------ccceeecCCC------
Confidence 48999999986 4565544 5666664421100 000 0000000000
Q ss_pred CCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC----CcEEEee
Q 013545 257 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD----SRIRLWD 332 (441)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D----~~i~~wd 332 (441)
... .+.......+.+. .+....... +.....+.+|...+.+++||||++.+++.... ..|.+||
T Consensus 217 ---~g~-----~~~~~~l~~~d~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 217 ---AGA-----KNPVVRIFIIDTT-YPAYVGPQE---VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp ---TTS-----CCCEEEEEEEESS-CHHHHCCEE---CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred ---CCC-----CCCeeEEEEEECC-CCCccceeE---ccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 000 0000000000000 000000000 00000123466778999999998877764433 2488899
Q ss_pred ----CCCCCceeeeeeeE-EeccCcce-----EEEeeCCCcEEEEe-C--C--CceEEEEccCCceEeeecccccceEEE
Q 013545 333 ----VESGRNTLVNFETV-RLQTSKPI-----QLATTQDPAVVFVP-C--M--TAVKAFDIWSGKTCLTFRGHYEYVNCC 397 (441)
Q Consensus 333 ----~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~-~--~--~~~~~wd~~~~~~~~~l~gh~~~v~~v 397 (441)
+.+++.... .... ........ ...+++|+..++.. . . ..+.+|++.+++ ...+..+...+..+
T Consensus 285 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~ 362 (719)
T 1z68_A 285 FREDWQTWDCPKT-QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINI 362 (719)
T ss_dssp ECSSSSSEECCGG-GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEE
T ss_pred ccCCCCCCceEEE-EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEE
Confidence 766542211 1000 11111111 46788998865442 2 2 257777776666 56677777778888
Q ss_pred EEcCCCCeEEEeecC-----CcEEEeCCCC
Q 013545 398 CFSSQDQELYTGGND-----RQILVWCPSR 422 (441)
Q Consensus 398 ~fspd~~~l~s~s~D-----~~i~vW~~~~ 422 (441)
.++ |++.|+..+.+ +.+++|.++.
T Consensus 363 ~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 363 FRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 888 88887765554 8899997754
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=1.3e-16 Score=152.49 Aligned_cols=249 Identities=9% Similarity=0.054 Sum_probs=162.5
Q ss_pred ceeEEEEeeCCCCEEEEEeCCCcEEEEECC-CCeEEEEEec--CCeeEEEeeccCCCCcc-EEEEEe-------------
Q 013545 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTN-CTRVVMNFKM--PGKVYRTAMSPLAASHM-LIAAGT------------- 167 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~las~s------------- 167 (441)
.+..++++| ++++|++++.+ +|.+||+. +++....... .+....+.++|++ .. +++++.
T Consensus 41 ~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 41 PISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNT--RAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCC--EEEEEEECSSTTCCEEEEEESS
T ss_pred CCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCC--CEEEEEEecCCcceeccceeec
Confidence 455677776 78889999888 99999997 7776543332 2333334555543 22 344553
Q ss_pred CCCcEEEEECC-CCceeeeec----CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC-CCceeeEeccCCccccCCCC
Q 013545 168 EDVQVRLCDIA-SGAISQTLS----GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR-RAGCFRVLDQSQSQLGRRPP 241 (441)
Q Consensus 168 ~d~~I~vwdl~-~~~~~~~l~----~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~-~~~~~~~~~~~~~~~~~~~~ 241 (441)
.++.+.+|++. +++....+. .+...+.+++|+|++++++++...++.|++||+. +++......
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~----------- 185 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS----------- 185 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE-----------
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee-----------
Confidence 68899999997 466544443 3566789999999998655444457899999987 443211000
Q ss_pred cccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEE
Q 013545 242 LLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS 321 (441)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 321 (441)
+ ....|...+..++|+|||++|++
T Consensus 186 -----------------------------------------------~---------~~~~~g~~p~~~~~spdg~~l~v 209 (365)
T 1jof_A 186 -----------------------------------------------V---------DAPDPGDHPRWVAMHPTGNYLYA 209 (365)
T ss_dssp -----------------------------------------------E---------ECSSTTCCEEEEEECTTSSEEEE
T ss_pred -----------------------------------------------E---------ecCCCCCCCCEeEECCCCCEEEE
Confidence 0 00011234788999999999877
Q ss_pred eec-CCcEEEeeCC--CCCcee--eeeeeEEec---cC-------cceEEE-eeCCCcEEEEeCC--C-----ceEEEEc
Q 013545 322 AGS-DSRIRLWDVE--SGRNTL--VNFETVRLQ---TS-------KPIQLA-TTQDPAVVFVPCM--T-----AVKAFDI 378 (441)
Q Consensus 322 gs~-D~~i~~wd~~--~~~~~~--~~~~~~~~~---~~-------~~~~~~-~~~~~~~~~~~~~--~-----~~~~wd~ 378 (441)
++. +++|.+|++. +++... ..+...... .. .+..++ +++|+..++++.. . .+.+|++
T Consensus 210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 764 7899999875 343211 011111000 01 355688 9999998876543 3 7999999
Q ss_pred c-CCceEe---eecccccceEEEEEcC---CCCeEEEeecC-CcEEEeCCCCCC
Q 013545 379 W-SGKTCL---TFRGHYEYVNCCCFSS---QDQELYTGGND-RQILVWCPSRHI 424 (441)
Q Consensus 379 ~-~~~~~~---~l~gh~~~v~~v~fsp---d~~~l~s~s~D-~~i~vW~~~~~~ 424 (441)
. +++... .+..+...+..++|+| ||++|++++.+ ++|++|+++...
T Consensus 290 ~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 290 RDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 6 666543 2334555678899999 89999988765 899999887653
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=8.5e-16 Score=146.36 Aligned_cols=271 Identities=11% Similarity=0.127 Sum_probs=168.4
Q ss_pred CCCceeEEEccCCCCcEEEEeeCC----CcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 42 HKGSINSLQVDLTEERYLLSGASD----SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s~s~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
|......++|+| ++++|++++.+ +.|++|++..... .+. .+... ..+......+.+ ++.
T Consensus 48 ~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g-----~~~---~~~~~-----~~~~~~p~~~~~---dg~ 110 (361)
T 3scy_A 48 EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKG-----TLH---LLNTQ-----KTMGADPCYLTT---NGK 110 (361)
T ss_dssp ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTT-----EEE---EEEEE-----ECSSSCEEEEEE---CSS
T ss_pred cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCC-----cEE---EeeEe-----ccCCCCcEEEEE---CCC
Confidence 567778899997 57889888886 7999999864210 000 00000 112223444444 577
Q ss_pred EEEEEe-CCCcEEEEECCCCeEE----EEEecC-----------CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc
Q 013545 118 LFVTGS-YDHYVKVWDTNCTRVV----MNFKMP-----------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA 181 (441)
Q Consensus 118 ~l~sgs-~D~~i~iWd~~~~~~~----~~~~~~-----------~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~ 181 (441)
++++++ .+++|.+|++.....+ ...... ..+..+.++|++. .+++++..++.|++|++....
T Consensus 111 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~v~v~~~~~~~ 188 (361)
T 3scy_A 111 NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK--YLLADDLGTDQIHKFNINPNA 188 (361)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTC
T ss_pred EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC--EEEEEeCCCCEEEEEEEcCCC
Confidence 776665 6889999998643322 111211 1235678887642 455666668899999887543
Q ss_pred -------ee------eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccccc
Q 013545 182 -------IS------QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSL 248 (441)
Q Consensus 182 -------~~------~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (441)
+. .....+...+..++|+|+++++++++..++.|++||+.++.........
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~---------------- 252 (361)
T 3scy_A 189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA---------------- 252 (361)
T ss_dssp CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE----------------
T ss_pred CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe----------------
Confidence 21 1122345567899999999876665557899999998754321110000
Q ss_pred ccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec--CC
Q 013545 249 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS--DS 326 (441)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~--D~ 326 (441)
....+...+..++|+|||++|+++.. ++
T Consensus 253 --------------------------------------------------~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 253 --------------------------------------------------ADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp --------------------------------------------------SCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred --------------------------------------------------cCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 00012233578999999998866555 48
Q ss_pred cEEEeeCC--CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEc--cCCceEeee-cccccceEEEEE
Q 013545 327 RIRLWDVE--SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDI--WSGKTCLTF-RGHYEYVNCCCF 399 (441)
Q Consensus 327 ~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~--~~~~~~~~l-~gh~~~v~~v~f 399 (441)
+|.+|++. +++. ........ ...+..+++++++..+++++. ..+.+|++ .++++.... ..+...+.||+|
T Consensus 283 ~i~v~~~~~~~g~~--~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 283 GVAIFKVDETNGTL--TKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEEEEECTTTCCE--EEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EEEEEEEcCCCCcE--EEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 99999996 3332 11222222 345678899999998887753 57888654 567665543 335567899998
Q ss_pred c
Q 013545 400 S 400 (441)
Q Consensus 400 s 400 (441)
.
T Consensus 360 ~ 360 (361)
T 3scy_A 360 V 360 (361)
T ss_dssp E
T ss_pred c
Confidence 6
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.76 E-value=1.5e-17 Score=173.41 Aligned_cols=290 Identities=10% Similarity=0.059 Sum_probs=178.6
Q ss_pred eeeecCCCC---ceeEEEccCCCCcEEEEeeC---------CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcc
Q 013545 36 KEIVSPHKG---SINSLQVDLTEERYLLSGAS---------DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK 103 (441)
Q Consensus 36 ~~~~~~H~~---~V~~l~~s~~~~~~l~s~s~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 103 (441)
..++.+|.. .|.+++||| ++++|++++. |++|++||+.+++.... . ...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-------~-----------~l~ 109 (719)
T 1z68_A 49 YTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-------N-----------ELP 109 (719)
T ss_dssp EEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------S-----------CCC
T ss_pred EEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccc-------e-----------ecC
Confidence 334444443 499999997 6888998887 79999999987643100 0 001
Q ss_pred cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe---e-----------------EEEeeccCCCCccEE
Q 013545 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK---V-----------------YRTAMSPLAASHMLI 163 (441)
Q Consensus 104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~---~-----------------~~~~~~~~~~~~~~l 163 (441)
..+..+.|+| ||+.||.++ |++|++||+.+++... +...+. + ..+.|+|++. .|
T Consensus 110 ~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~-l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~---~l 183 (719)
T 1z68_A 110 RPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQ-ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK---FL 183 (719)
T ss_dssp SSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEE-CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS---EE
T ss_pred cccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEE-EecCCCcCCeEcccccceeeeecccCcccEEECCCCC---EE
Confidence 2466778887 888999886 7899999998877643 221111 1 3677888653 56
Q ss_pred EEEeCCC----------------------------------cEEEEECCCCcee--------eeecCCCCCeEEEEEecC
Q 013545 164 AAGTEDV----------------------------------QVRLCDIASGAIS--------QTLSGHRDGIMTVEWSTS 201 (441)
Q Consensus 164 as~s~d~----------------------------------~I~vwdl~~~~~~--------~~l~~h~~~v~~v~fsp~ 201 (441)
++++.|. .|++||+++++.. ..+.+|...+.+++|+|+
T Consensus 184 a~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD 263 (719)
T 1z68_A 184 AYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD 263 (719)
T ss_dssp EEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS
T ss_pred EEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC
Confidence 6665442 7889999988753 234578889999999999
Q ss_pred CCcEEEEeecCC----cEEEEE----cCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 202 SEWILVTGGCDG----AIRFWD----IRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 202 ~~~~l~s~s~Dg----~I~iWD----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
++ ++++....+ .|.+|| +.++++..++..
T Consensus 264 ~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~------------------------------------------ 300 (719)
T 1z68_A 264 ER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEH------------------------------------------ 300 (719)
T ss_dssp SE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEE------------------------------------------
T ss_pred Ce-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEec------------------------------------------
Confidence 75 566644322 488888 654432111100
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeE-----EEEEccCCCEEE--EeecCC--cEEEeeCCCCCceeeeee
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVT-----GLKVTEDGMYLL--SAGSDS--RIRLWDVESGRNTLVNFE 344 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-----~l~~s~dg~~l~--sgs~D~--~i~~wd~~~~~~~~~~~~ 344 (441)
....|.+.+. .++|+|||+.|+ +...++ .|.+||+.+++... +
T Consensus 301 -------------------------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~--l- 352 (719)
T 1z68_A 301 -------------------------IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQ--I- 352 (719)
T ss_dssp -------------------------EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEE--C-
T ss_pred -------------------------ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEe--c-
Confidence 0001222232 568999999654 344555 57777877654211 1
Q ss_pred eEEeccCcceEEEeeCCCcEE-EEeCC-----CceEEEEccC--Cc-eEeee----cccccceEEEEEcCCCCeEE-Eee
Q 013545 345 TVRLQTSKPIQLATTQDPAVV-FVPCM-----TAVKAFDIWS--GK-TCLTF----RGHYEYVNCCCFSSQDQELY-TGG 410 (441)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~wd~~~--~~-~~~~l----~gh~~~v~~v~fspd~~~l~-s~s 410 (441)
...........+. ++..+ +.... ...++|.+.. +. ....+ .+|...+..+.||||+++|+ +++
T Consensus 353 --t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s 429 (719)
T 1z68_A 353 --TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCY 429 (719)
T ss_dssp --SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEEC
T ss_pred --ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcC
Confidence 1011112233344 55544 44443 4678888753 42 12333 34777889999999999877 454
Q ss_pred cC--CcEEEeCCCCCC
Q 013545 411 ND--RQILVWCPSRHI 424 (441)
Q Consensus 411 ~D--~~i~vW~~~~~~ 424 (441)
.+ ..+.+|++.++.
T Consensus 430 ~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 430 GPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CBSSCEEEEECSSSCC
T ss_pred CCCCCeEEEEECCCCC
Confidence 44 468899987775
No 161
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.75 E-value=4.8e-16 Score=147.17 Aligned_cols=260 Identities=14% Similarity=0.182 Sum_probs=164.5
Q ss_pred CCCCceeEEEccCCCCcEEEEeeC---CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 41 PHKGSINSLQVDLTEERYLLSGAS---DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
++...+..++|+| +++ |++++. ++.|++||+.++... .+. ....|...+..++++| +++
T Consensus 37 ~~~~~p~~~a~sp-dg~-l~~~~~~~~~~~v~~~~~~~g~~~----------~~~-----~~~~~~~~p~~~a~sp-dg~ 98 (347)
T 3hfq_A 37 AATQNPTYLALSA-KDC-LYSVDKEDDEGGIAAWQIDGQTAH----------KLN-----TVVAPGTPPAYVAVDE-ARQ 98 (347)
T ss_dssp EECSCCCCEEECT-TCE-EEEEEEETTEEEEEEEEEETTEEE----------EEE-----EEEEESCCCSEEEEET-TTT
T ss_pred eccCCcceEEEcc-CCe-EEEEEecCCCceEEEEEecCCcEE----------Eee-----eeecCCCCCEEEEECC-CCC
Confidence 4556788899997 566 554444 689999999654310 000 0113445566788876 788
Q ss_pred EEEEEe-CCCcEEEEECC-CCe--EEEEEecCC----------eeEEEeeccCCCCccEEEEEeCCCcEEEEECC-CCce
Q 013545 118 LFVTGS-YDHYVKVWDTN-CTR--VVMNFKMPG----------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-SGAI 182 (441)
Q Consensus 118 ~l~sgs-~D~~i~iWd~~-~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~-~~~~ 182 (441)
+|++++ .+++|++||+. ++. .+..+...+ .+..+.++|++. ++++...++.|++|++. +++.
T Consensus 99 ~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~---l~v~~~~~~~v~~~~~~~~g~~ 175 (347)
T 3hfq_A 99 LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR---LAVIDLGSDKVYVYNVSDAGQL 175 (347)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC---EEEEETTTTEEEEEEECTTSCE
T ss_pred EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc---EEEEeCCCCEEEEEEECCCCcE
Confidence 888887 78999999985 333 333333321 256678888643 77777778899999998 5543
Q ss_pred ee--eecCC-CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC-ceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545 183 SQ--TLSGH-RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP 258 (441)
Q Consensus 183 ~~--~l~~h-~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (441)
.. .+..+ ...+..++|+|+++++++++..++.|++||+... ..+..+.....
T Consensus 176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~------------------------ 231 (347)
T 3hfq_A 176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT------------------------ 231 (347)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES------------------------
T ss_pred EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee------------------------
Confidence 32 22222 3367889999999877777778899999998741 11111000000
Q ss_pred CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCCCC
Q 013545 259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~~~ 337 (441)
.+. .......+..++|+|||++| ++...+++|.+|++....
T Consensus 232 -------------------------------~~~-------~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 232 -------------------------------IPA-------DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp -------------------------------SCT-------TCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred -------------------------------cCC-------CCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 000 00001247789999999977 666779999999997321
Q ss_pred ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEc--cCCceE
Q 013545 338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDI--WSGKTC 384 (441)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~--~~~~~~ 384 (441)
..............+..+++++++..++++.. ..+.+|++ .++++.
T Consensus 274 -~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 274 -HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp -CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred -cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 11222222222345678899999998877653 57999955 556544
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.73 E-value=3.8e-16 Score=163.31 Aligned_cols=291 Identities=11% Similarity=0.130 Sum_probs=183.9
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
....+++|+| ++++|+++ ||+|++||+.++... ..+.......+........++| |+++|+.++
T Consensus 17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~ 80 (740)
T 4a5s_A 17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSS------------VFLENSTFDEFGHSINDYSISP-DGQFILLEY 80 (740)
T ss_dssp CCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCEE------------EEECTTTTTTCCSCCCEEEECT-TSSEEEEEE
T ss_pred ccccccEECC-CCcEEEEc--CCcEEEEECCCCceE------------EEEechhhhhhcccccceEECC-CCCEEEEEE
Confidence 4467899996 57888886 999999999876531 1111111112222233466676 899999998
Q ss_pred CC---------CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee-eecCCCCCe
Q 013545 124 YD---------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGI 193 (441)
Q Consensus 124 ~D---------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~h~~~v 193 (441)
.+ +.+.+||+.+++........+.+....|+|++. .||.+ .++.|++||+.+++..+ +..++...+
T Consensus 81 ~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~---~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 81 NYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (740)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred CCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCC---EEEEE-ECCeEEEEECCCCceEEEcCCCCccce
Confidence 87 455699999998654333456688889999764 46665 46899999999887544 233443333
Q ss_pred -----------------EEEEEecCCCcEEEEeecC-CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCC
Q 013545 194 -----------------MTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSS 255 (441)
Q Consensus 194 -----------------~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (441)
.++.|||||+.+ |..+.| +.+++|++......
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~l-a~~~~d~~~v~~~~~~~~~~~----------------------------- 206 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWWSPNGTFL-AYAQFNDTEVPLIEYSFYSDE----------------------------- 206 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECTTSSEE-EEEEEECTTCCEEEEEECCST-----------------------------
T ss_pred ecCcccccccchhcCCCcceEECCCCCEE-EEEEEcccCCceEEEEeecCC-----------------------------
Confidence 358999999964 555544 55999986421000
Q ss_pred cCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCC
Q 013545 256 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 335 (441)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~ 335 (441)
..+...+..+.+.+.|.. ....+|++||+.+
T Consensus 207 ---------------------------------------------~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~ 237 (740)
T 4a5s_A 207 ---------------------------------------------SLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDS 237 (740)
T ss_dssp ---------------------------------------------TCSSCEEEEEECCBTTSC----CCEEEEEEEETTS
T ss_pred ---------------------------------------------CCCCCcceeecCCCCcCc----CCeeEEEEEECCC
Confidence 011223455666666533 2233789999998
Q ss_pred ---CCc-eeeeeeeEE---eccCcceEEEeeCCCcEEEEeCC-----CceEEEEccCCc----eEe--ee--cccccceE
Q 013545 336 ---GRN-TLVNFETVR---LQTSKPIQLATTQDPAVVFVPCM-----TAVKAFDIWSGK----TCL--TF--RGHYEYVN 395 (441)
Q Consensus 336 ---~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~wd~~~~~----~~~--~l--~gh~~~v~ 395 (441)
++. ....+.... ........++++||+..++.... ..+.+||+.+++ +.. ++ .+|..+|.
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~ 317 (740)
T 4a5s_A 238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVG 317 (740)
T ss_dssp CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSS
T ss_pred CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEc
Confidence 631 011110000 01222446788999986554321 268999999987 322 22 56777776
Q ss_pred -----EEEEcCCCCeEE-EeecC---CcEEEeCCCCCCCCCccCCcc
Q 013545 396 -----CCCFSSQDQELY-TGGND---RQILVWCPSRHISDGVDAGPM 433 (441)
Q Consensus 396 -----~v~fspd~~~l~-s~s~D---~~i~vW~~~~~~~~~~~~~~~ 433 (441)
.++|||||+.|+ ..+++ ..|.+|+..++....+..|..
T Consensus 318 ~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~ 364 (740)
T 4a5s_A 318 RFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTW 364 (740)
T ss_dssp SSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSS
T ss_pred cCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCE
Confidence 789999999887 66643 468889998888777776643
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=1.5e-15 Score=143.23 Aligned_cols=301 Identities=12% Similarity=0.091 Sum_probs=170.5
Q ss_pred EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE-EEEEeCCC
Q 013545 48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL-FVTGSYDH 126 (441)
Q Consensus 48 ~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~-l~sgs~D~ 126 (441)
.++++ .+++++++++.|++|++||+.+++... .+.. +....+..+.+++ ++++ ++++..++
T Consensus 4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~----------~~~~------~~~~~~~~~~~s~-dg~~~~v~~~~~~ 65 (349)
T 1jmx_B 4 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYK----------SCVM------PDKFGPGTAMMAP-DNRTAYVLNNHYG 65 (349)
T ss_dssp CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEE----------EEEC------SSCCSSCEEEECT-TSSEEEEEETTTT
T ss_pred ccccc-CCCEEEEEeCCCCeEEEEECCCCcEEE----------EEec------CCCCCCceeEECC-CCCEEEEEeCCCC
Confidence 34566 457789999999999999998654210 0100 1112355677776 6665 45666789
Q ss_pred cEEEEECCCCeEEEEEecCCe-------eEEEeeccCCCCccEEEEEeCC------------CcEEEEECCCCcee---e
Q 013545 127 YVKVWDTNCTRVVMNFKMPGK-------VYRTAMSPLAASHMLIAAGTED------------VQVRLCDIASGAIS---Q 184 (441)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~las~s~d------------~~I~vwdl~~~~~~---~ 184 (441)
+|.+||+.+++.+..+..... +..+.+++++ ..|++++.+ +.|.+||+++++.. .
T Consensus 66 ~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg---~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 142 (349)
T 1jmx_B 66 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG---KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR 142 (349)
T ss_dssp EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS---SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred cEEEEeCCCCcEEEEEEcccccccccccccceEECCCC---CEEEEEcccccccccccccCCCeEEEEECCCccccceee
Confidence 999999999998877765331 4566777754 356655544 89999999986543 3
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR 264 (441)
Q Consensus 185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (441)
.+. +...+.+++|+|+++ +++ + ++.|.+||+.+++....+....... + .. .................
T Consensus 143 ~~~-~~~~~~~~~~s~dg~-l~~-~--~~~i~~~d~~~~~~~~~~~~~~~~~---~-~~----~~~~~~~~~~~~~~~~~ 209 (349)
T 1jmx_B 143 TFP-MPRQVYLMRAADDGS-LYV-A--GPDIYKMDVKTGKYTVALPLRNWNR---K-GY----SAPDVLYFWPHQSPRHE 209 (349)
T ss_dssp EEE-CCSSCCCEEECTTSC-EEE-E--SSSEEEECTTTCCEEEEECSTTCCC---T-TB----CCCBCCCCCCCCCTTCE
T ss_pred ecc-CCCcccceeECCCCc-EEE-c--cCcEEEEeCCCCceeccccccccCC---c-cc----cCccceeeecCCCccee
Confidence 333 344688999999998 655 3 3459999998887665543211000 0 00 00000000000000000
Q ss_pred cCCCCCccccCccccc-CCCCcc-----cccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCCC
Q 013545 265 SANGNGVRQSSVGRIP-AKGSVR-----QRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 265 ~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
......+...+++... ...... .....+..... ....+...+.+++|+| ||++++++ +++|.+||+.+++
T Consensus 210 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 210 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ-EFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp EEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE-EEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred EEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec-ccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 0000000111000000 000000 00000000000 0112334678899999 99999888 8899999998865
Q ss_pred ceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeeccc
Q 013545 338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH 390 (441)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh 390 (441)
.. .... ....+..+++++++..+++.+. ..+.+||..+++.+..+..+
T Consensus 287 ~~----~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 287 LI----KAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EE----EEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EE----EEEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 31 1111 1234667889999887777543 68999999999887776544
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=2.9e-14 Score=131.11 Aligned_cols=251 Identities=8% Similarity=0.157 Sum_probs=166.2
Q ss_pred cCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEE
Q 013545 40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF 119 (441)
Q Consensus 40 ~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 119 (441)
.+|.....++++++ +++++++.+.++.|++||..... . . .+ .......+|...+..+++.+.++.++
T Consensus 26 ~g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~~-~------~----~~-~~~~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 26 EGQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRF-K------F----QF-GECGKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp TTCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCE-E------E----EE-CCBSSSTTCBSSEEEEEEETTTTEEE
T ss_pred CCccCCCceEEECC-CCCEEEEECCCCEEEEECCCCcE-E------E----Ee-cccCCCcccccCceEEEEEcCCCeEE
Confidence 35677899999986 57788888999999999976221 0 0 00 00011124455677777754466666
Q ss_pred EEEeC-CCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec--CCCCCeE
Q 013545 120 VTGSY-DHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS--GHRDGIM 194 (441)
Q Consensus 120 ~sgs~-D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~--~h~~~v~ 194 (441)
++... ++.|++|| .+++.+..+... .....+++.+.+ .++++...++.|.+||.. ++.+..+. ++...+.
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~ 167 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKG---RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN 167 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTS---CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred EEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCC---CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence 66543 89999999 566766666432 345667776643 366666678899999964 55555553 4556789
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS 274 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (441)
+++++|++. ++++.+.++.|++||.. ++.+..+..
T Consensus 168 ~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~------------------------------------------- 202 (286)
T 1q7f_A 168 GVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGG------------------------------------------- 202 (286)
T ss_dssp EEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESC-------------------------------------------
T ss_pred EEEECCCCC-EEEEECCCCEEEEEcCC-CCEEEEEcc-------------------------------------------
Confidence 999999986 67777788999999964 222211100
Q ss_pred CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC-cEEEeeCCCCCceeeeeeeEEeccCcc
Q 013545 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS-RIRLWDVESGRNTLVNFETVRLQTSKP 353 (441)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-~i~~wd~~~~~~~~~~~~~~~~~~~~~ 353 (441)
.++...+.+|+++|+|.++++...++ +|++||... +. . .....
T Consensus 203 --------------------------~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~-~---~~~~~----- 246 (286)
T 1q7f_A 203 --------------------------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QL-I---SALES----- 246 (286)
T ss_dssp --------------------------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CE-E---EEEEE-----
T ss_pred --------------------------CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CE-E---EEEcc-----
Confidence 01113467899999999999888886 999998542 21 0 00000
Q ss_pred eEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 354 IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
......+.+++|+|||+++++ +.|++|++|+.....
T Consensus 247 ----------------------------------~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 247 ----------------------------------KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp ----------------------------------SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred ----------------------------------cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 011223678999999988777 579999999876543
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=3.7e-15 Score=142.15 Aligned_cols=264 Identities=13% Similarity=0.063 Sum_probs=175.1
Q ss_pred CCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe----------CCCcEEEEEC
Q 013545 64 SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS----------YDHYVKVWDT 133 (441)
Q Consensus 64 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs----------~D~~i~iWd~ 133 (441)
.|++|.+||..+++.. ..+ ..+..+ .++++| |+++++.+. .|++|.+||+
T Consensus 29 ~d~~v~v~D~~t~~~~------------~~i-----~~g~~p--~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFL------------GMV-----PTAFNG--HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGCEEEEEETTTCCEE------------EEE-----ECCEEE--EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred ccCeEEEEECCCCeEE------------EEe-----cCCCCC--ceEECC-CCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 5789999998766421 001 112223 566766 788888776 3678999999
Q ss_pred CCCeEEEEEecC-------CeeEEEeeccCCCCccEEEEEe-C-CCcEEEEECCCCceeee-ecCCCCCeEEEEEecCCC
Q 013545 134 NCTRVVMNFKMP-------GKVYRTAMSPLAASHMLIAAGT-E-DVQVRLCDIASGAISQT-LSGHRDGIMTVEWSTSSE 203 (441)
Q Consensus 134 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~las~s-~-d~~I~vwdl~~~~~~~~-l~~h~~~v~~v~fsp~~~ 203 (441)
.+.+.+..+... .....+.+++++. .|+++. . ++.|.+||+++++.+.. +... ....+.+.|+++
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~---~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~ 163 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK---FIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRP 163 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSS---EEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSS
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCC---EEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCC
Confidence 999988877653 1234566777643 454443 3 68999999999988877 5422 223467788876
Q ss_pred cEEEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCC
Q 013545 204 WILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK 282 (441)
Q Consensus 204 ~~l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (441)
..+++.+.||++.+|++.. ++....... ...
T Consensus 164 ~~~~~~~~dg~~~~v~~~~~g~~~~~~~~--~~~---------------------------------------------- 195 (361)
T 2oiz_A 164 RSFMTICGDGGLLTINLGEDGKVASQSRS--KQM---------------------------------------------- 195 (361)
T ss_dssp SEEEEEETTSSEEEEEECTTSSEEEEEEC--CCC----------------------------------------------
T ss_pred eeEEEECCCCcEEEEEECCCCcEeeeccc--cce----------------------------------------------
Confidence 6778899999999999864 322111000 000
Q ss_pred CCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe----------ccCc
Q 013545 283 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL----------QTSK 352 (441)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~----------~~~~ 352 (441)
+ ..+..++ .+.+++++..++..+.+++|.++|+........ ..... ....
T Consensus 196 ------~-----------~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 196 ------F-----------SVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVD--GPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp ------S-----------CTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEE--EEEESCCHHHHHTTCEECC
T ss_pred ------E-----------cCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceec--ccccccCccccccccccCC
Confidence 0 0000111 122356777777677888999999876543221 11110 0122
Q ss_pred ceEEEeeCCCcEEEEeC------------CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 353 PIQLATTQDPAVVFVPC------------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~~------------~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
...+++++++..+++.. ...+.+||..+++.+.++..|. +.+++|+|||++|++++. ++|.+||.
T Consensus 256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 22367889988877753 2368999999999999999887 999999999999998886 99999999
Q ss_pred CCC
Q 013545 421 SRH 423 (441)
Q Consensus 421 ~~~ 423 (441)
.++
T Consensus 333 ~t~ 335 (361)
T 2oiz_A 333 SQP 335 (361)
T ss_dssp SSS
T ss_pred CCC
Confidence 998
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=1.2e-13 Score=129.92 Aligned_cols=250 Identities=12% Similarity=0.090 Sum_probs=171.1
Q ss_pred cceeEEEEeeCCCCEEEEEeCC------------------------CcEEEEECCCCeEEEEEecC--CeeEEEeeccCC
Q 013545 104 YAISSAIWYPVDTGLFVTGSYD------------------------HYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLA 157 (441)
Q Consensus 104 ~~V~~~~~~~~~~~~l~sgs~D------------------------~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~ 157 (441)
+.+.++++.+ ++.++++.+.+ ++|.+||..+++.+..+... .....+++.+.+
T Consensus 24 ~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 24 GQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp SCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred CCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4577788876 68888888877 47999999989887655422 235567777643
Q ss_pred CCccEEEEEeCCCcEEEEECCCCc-eeeee---------cCCCCCeEEEEEec-CCCcEEEEee-cCCcEEEEEcCCCce
Q 013545 158 ASHMLIAAGTEDVQVRLCDIASGA-ISQTL---------SGHRDGIMTVEWST-SSEWILVTGG-CDGAIRFWDIRRAGC 225 (441)
Q Consensus 158 ~~~~~las~s~d~~I~vwdl~~~~-~~~~l---------~~h~~~v~~v~fsp-~~~~~l~s~s-~Dg~I~iWD~~~~~~ 225 (441)
.++++...++.|++||.+... .+..+ .++......++|+| ++. ++++.+ .++.|++|| ..+..
T Consensus 103 ---~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~-~~g~~ 177 (329)
T 3fvz_A 103 ---NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFS-PSGKF 177 (329)
T ss_dssp ---CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEEC-TTSCE
T ss_pred ---CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEc-CCCCE
Confidence 377777888999999986553 44444 35556789999999 565 677776 689999999 44443
Q ss_pred eeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeecc
Q 013545 226 FRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG 305 (441)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 305 (441)
+..+..... +. ....++..
T Consensus 178 ~~~~~~~g~------------------------------------------------~~-------------~~~~~~~~ 196 (329)
T 3fvz_A 178 VTQWGEESS------------------------------------------------GS-------------SPRPGQFS 196 (329)
T ss_dssp EEEECEECC------------------------------------------------SS-------------SCCTTEES
T ss_pred EEEeccCCC------------------------------------------------CC-------------CCCCcccC
Confidence 333211000 00 00012334
Q ss_pred CeEEEEEccC-CCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC--------CCceEEE
Q 013545 306 AVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--------MTAVKAF 376 (441)
Q Consensus 306 ~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~w 376 (441)
.+.+|+++|+ +..+++...+++|++||..+++... .+.. ......+..+++.| +..+...+ ...+++|
T Consensus 197 ~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~-~~~~-~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~ 273 (329)
T 3fvz_A 197 VPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR-EIKH-ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVM 273 (329)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECC-TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE-EEec-cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEE
Confidence 5789999998 8888888999999999998665321 1100 01122344556666 32222221 1278999
Q ss_pred EccCCceEeee---cccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545 377 DIWSGKTCLTF---RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 377 d~~~~~~~~~l---~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~ 423 (441)
+..+++.+..+ .+|...+..|+|+|||..+++...++.|++|++...
T Consensus 274 ~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 274 NFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp ETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 99999998887 478888999999999988889889999999998653
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=1.1e-14 Score=139.92 Aligned_cols=273 Identities=8% Similarity=-0.004 Sum_probs=166.4
Q ss_pred ceeEEEccCCCCcEEEEeeCC-C--cEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545 45 SINSLQVDLTEERYLLSGASD-S--SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~D-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 121 (441)
.+..++|+| ++++|+..+.+ + .|.+||+.+++... + ..++......+.|+| |+++|+.
T Consensus 37 ~~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------l----~~~~~~~~~~~~~sp-dg~~l~~ 97 (396)
T 3c5m_A 37 YFYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------L----TEGKGDNTFGGFIST-DERAFFY 97 (396)
T ss_dssp CTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEEE-------------C----CCSSCBCTTTCEECT-TSSEEEE
T ss_pred eeecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEEE-------------e----ecCCCCccccceECC-CCCEEEE
Confidence 378889997 57777666443 3 67888887653210 0 011111122245665 8899999
Q ss_pred EeCCCcEEEEECCCCeEEEEEecCCe-eEE---E----------------eeccCCCCccEEEEE-----eCCCcEEEEE
Q 013545 122 GSYDHYVKVWDTNCTRVVMNFKMPGK-VYR---T----------------AMSPLAASHMLIAAG-----TEDVQVRLCD 176 (441)
Q Consensus 122 gs~D~~i~iWd~~~~~~~~~~~~~~~-~~~---~----------------~~~~~~~~~~~las~-----s~d~~I~vwd 176 (441)
++.++.|.+||+.+++.......+.. ... + .++|++ ..++.. ..+..|.+||
T Consensus 98 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg---~~~~~~~~~~~~~~~~l~~~d 174 (396)
T 3c5m_A 98 VKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT---SWEKFAEFYHTNPTCRLIKVD 174 (396)
T ss_dssp EETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC---SHHHHHHHHHTCCCEEEEEEE
T ss_pred EEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC---cceeeeeeccCCCcceEEEEE
Confidence 99999999999998876554443221 111 1 223322 112211 3456899999
Q ss_pred CCCCceeeeecCCCCCeEEEEEec-CCCcEEEEeecC------CcEEEEEcCCCceeeEeccCCccccCCCCcccccccc
Q 013545 177 IASGAISQTLSGHRDGIMTVEWST-SSEWILVTGGCD------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLS 249 (441)
Q Consensus 177 l~~~~~~~~l~~h~~~v~~v~fsp-~~~~~l~s~s~D------g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (441)
+.+++..... .+...+..+.|+| +++.+ +..+.+ ..|.+||+..+.... +
T Consensus 175 ~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l-~~~~~~~~~~~~~~l~~~d~~~~~~~~-l-------------------- 231 (396)
T 3c5m_A 175 IETGELEVIH-QDTAWLGHPIYRPFDDSTV-GFCHEGPHDLVDARMWLVNEDGSNVRK-I-------------------- 231 (396)
T ss_dssp TTTCCEEEEE-EESSCEEEEEEETTEEEEE-EEEECSCSSSCSCCCEEEETTSCCCEE-S--------------------
T ss_pred CCCCcEEeec-cCCcccccceECCCCCCEE-EEEecCCCCCCCceEEEEECCCCceeE-e--------------------
Confidence 9998765444 5677889999999 67644 333333 356667764321000 0
Q ss_pred cCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceee-ccCeEEEEEccCCCEEEEeecC---
Q 013545 250 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH-YGAVTGLKVTEDGMYLLSAGSD--- 325 (441)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~D--- 325 (441)
.... ...+..++|+|||++|+..+.+
T Consensus 232 --------------------------------------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (396)
T 3c5m_A 232 --------------------------------------------------KEHAEGESCTHEFWIPDGSAMAYVSYFKGQ 261 (396)
T ss_dssp --------------------------------------------------SCCCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred --------------------------------------------------eccCCCccccceEECCCCCEEEEEecCCCC
Confidence 0000 1236778999999988777554
Q ss_pred --CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeC-CCcEEEEeC-----------------CCceEEEEccCCceEe
Q 013545 326 --SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ-DPAVVFVPC-----------------MTAVKAFDIWSGKTCL 385 (441)
Q Consensus 326 --~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------------~~~~~~wd~~~~~~~~ 385 (441)
++|++||+.+++.... .. . .. ....+++ ++..++... ...+.+||+.+++. .
T Consensus 262 ~~~~l~~~d~~~g~~~~l--~~--~-~~--~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~ 333 (396)
T 3c5m_A 262 TDRVIYKANPETLENEEV--MV--M-PP--CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-Q 333 (396)
T ss_dssp CCEEEEEECTTTCCEEEE--EE--C-CS--EEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-C
T ss_pred ccceEEEEECCCCCeEEe--ee--C-CC--CCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-E
Confidence 4499999988753211 11 1 11 1267788 888776532 25789999987764 4
Q ss_pred eeccccc-----------ceEEEEEcCCCCeEEEeec-CCcEEEeCC
Q 013545 386 TFRGHYE-----------YVNCCCFSSQDQELYTGGN-DRQILVWCP 420 (441)
Q Consensus 386 ~l~gh~~-----------~v~~v~fspd~~~l~s~s~-D~~i~vW~~ 420 (441)
.+..|.. .+..++|+|||++|+.++. ++...||.+
T Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 334 KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 5555654 2567899999999887664 566666644
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.64 E-value=6.6e-14 Score=133.64 Aligned_cols=257 Identities=11% Similarity=0.068 Sum_probs=156.4
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECC-CCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE-
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQ-RATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL- 118 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~- 118 (441)
++...+..++|+| ++++|++++.+ +|.+||+. +++.. .+.... ..+ .+..+.++| ++++
T Consensus 37 ~~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~----------~~~~~~---~~g---~~~~~~~sp-dg~~l 97 (365)
T 1jof_A 37 PQDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIV----------HEASHP---IGG---HPRANDADT-NTRAI 97 (365)
T ss_dssp CTTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEE----------EEEEEE---CCS---SGGGGCTTS-CCEEE
T ss_pred CCCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEE----------EeeEee---cCC---CCccEEECC-CCCEE
Confidence 3445688999997 57889999888 99999986 43210 000000 001 122345555 6773
Q ss_pred -EEEEe-------------CCCcEEEEECC-CCeEEEEEe-----cCCeeEEEeeccCCCCccEEEEE-eCCCcEEEEEC
Q 013545 119 -FVTGS-------------YDHYVKVWDTN-CTRVVMNFK-----MPGKVYRTAMSPLAASHMLIAAG-TEDVQVRLCDI 177 (441)
Q Consensus 119 -l~sgs-------------~D~~i~iWd~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~las~-s~d~~I~vwdl 177 (441)
++++. .++++++|++. +++....+. ....+..+.++|++. .|+++ ..++.|++||+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~---~l~~~~~~~~~v~~~~~ 174 (365)
T 1jof_A 98 FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET---YLYSADLTANKLWTHRK 174 (365)
T ss_dssp EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS---EEEEEETTTTEEEEEEE
T ss_pred EEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC---EEEEEcCCCCEEEEEEE
Confidence 45553 79999999997 465543333 234577888888653 34444 34679999999
Q ss_pred C-CCcee--eeec--CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC--CceeeEeccCCccccCCCCccccccccc
Q 013545 178 A-SGAIS--QTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR--AGCFRVLDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 178 ~-~~~~~--~~l~--~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
+ +++.. ..+. .|...+..++|+|++++++++...+++|.+|++.. ++....... +. .+
T Consensus 175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~----~~---------~~-- 239 (365)
T 1jof_A 175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS----FP---------LI-- 239 (365)
T ss_dssp CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE----EE---------SS--
T ss_pred CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce----EE---------cC--
Confidence 8 77653 2333 24567899999999986555444578999998752 321100000 00 00
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeecc------CeEEEE-EccCCCEEEEee
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG------AVTGLK-VTEDGMYLLSAG 323 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------~v~~l~-~s~dg~~l~sgs 323 (441)
+ ....+|.. .+..++ |+|||++|++++
T Consensus 240 ----------------------------------------~------~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 240 ----------------------------------------P------PGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp ----------------------------------------C------TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred ----------------------------------------C------CCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 0 00001111 477899 999999887665
Q ss_pred cCC------cEEEeeCC-CCCceeeeeeeEEeccCcceEEEeeC---CCcEEEEeCC--CceEEEEccCC
Q 013545 324 SDS------RIRLWDVE-SGRNTLVNFETVRLQTSKPIQLATTQ---DPAVVFVPCM--TAVKAFDIWSG 381 (441)
Q Consensus 324 ~D~------~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~wd~~~~ 381 (441)
.+. +|++|++. +++.... ..........+..++++| ++.++++++. ..+++|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~-~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQ-LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEE-EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEe-eeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 432 89999996 4442110 001111223455677888 7888888764 58999998765
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=6.3e-14 Score=144.55 Aligned_cols=291 Identities=11% Similarity=0.029 Sum_probs=176.7
Q ss_pred ecCCCCceeEEEccCCCCcEEEEe--eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCccccee---------
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSG--ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAIS--------- 107 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~--s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--------- 107 (441)
+.+|...|..+++++ +.-++++. +.|+...||....+.... ....|...+.
T Consensus 19 ~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~l~~~~~~~~~~~~~~~~~ 80 (662)
T 3azo_A 19 VASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEE-----------------SALPAPWNVRNRVFEYSGF 80 (662)
T ss_dssp HHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEE-----------------ESSCTTCCBCCCGGGTCCC
T ss_pred HhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcc-----------------eeCCCCccccccccccCCc
Confidence 457889999999995 45566777 668999999863221100 0011222222
Q ss_pred EEEEe-eCCCCE-EEEEeC-CCcEEEEECC--C-CeEEEEEec------CCeeEEEeeccCCCCccEEEEEeCC------
Q 013545 108 SAIWY-PVDTGL-FVTGSY-DHYVKVWDTN--C-TRVVMNFKM------PGKVYRTAMSPLAASHMLIAAGTED------ 169 (441)
Q Consensus 108 ~~~~~-~~~~~~-l~sgs~-D~~i~iWd~~--~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~las~s~d------ 169 (441)
...++ ++|++. |+.++. +..|.+|++. . +.. ..+.. ...+..+.++|++. .|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~---~l~~~~~~~~~~~~ 156 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERG---EVWCMAEEFTGEGP 156 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTT---EEEEEEEEECSSST
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCC---EEEEEEecccCCCC
Confidence 34455 257877 665544 5667777765 2 443 22222 23466788888653 56666655
Q ss_pred ----CcEEEEECCC------Cceeeeec-CCCCCeEEEEEecCCCcEEEEeecC--------CcEEEEEcC-CCc--eee
Q 013545 170 ----VQVRLCDIAS------GAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCD--------GAIRFWDIR-RAG--CFR 227 (441)
Q Consensus 170 ----~~I~vwdl~~------~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~D--------g~I~iWD~~-~~~--~~~ 227 (441)
..|++||+.+ ++. ..+. .+...+..++|+|||+++ +.++.+ ..|.+||+. ++. ...
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~l-a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~ 234 (662)
T 3azo_A 157 SDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQA-VWLAWDHPRMPWEGTELKTARVTEDGRFADTR 234 (662)
T ss_dssp TCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEE-EEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred CCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEE-EEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence 5899999988 554 4555 566778899999999864 555544 379999987 331 110
Q ss_pred EeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCe
Q 013545 228 VLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAV 307 (441)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 307 (441)
.+ ...|...+
T Consensus 235 ~l----------------------------------------------------------------------~~~~~~~~ 244 (662)
T 3azo_A 235 TL----------------------------------------------------------------------LGGPEEAI 244 (662)
T ss_dssp EE----------------------------------------------------------------------EEETTBCE
T ss_pred Ee----------------------------------------------------------------------CCCCCceE
Confidence 00 11234568
Q ss_pred EEEEEccCCCEEEEeecCC--cEEEeeCCCCCceeeeeeeEEecc------CcceEEEeeCCCcEEEEeCCCceEEE--E
Q 013545 308 TGLKVTEDGMYLLSAGSDS--RIRLWDVESGRNTLVNFETVRLQT------SKPIQLATTQDPAVVFVPCMTAVKAF--D 377 (441)
Q Consensus 308 ~~l~~s~dg~~l~sgs~D~--~i~~wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~w--d 377 (441)
..++|+|||+++++++.|+ +|.+||+.+++... +....... .....+++++++.++++......++| |
T Consensus 245 ~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~--l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 322 (662)
T 3azo_A 245 AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ--LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILD 322 (662)
T ss_dssp EEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE--SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEE
T ss_pred cceEECCCCeEEEEECCCCCeEEEEEECCCCceee--cccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEE
Confidence 8899999999888888888 56666665554211 10000000 00234677788888777654667888 4
Q ss_pred ccCCceEeeecccccceEEE-EEcCCCCeEEEeecCCcEEEe--CCCCCCCC
Q 013545 378 IWSGKTCLTFRGHYEYVNCC-CFSSQDQELYTGGNDRQILVW--CPSRHISD 426 (441)
Q Consensus 378 ~~~~~~~~~l~gh~~~v~~v-~fspd~~~l~s~s~D~~i~vW--~~~~~~~~ 426 (441)
..+++ +..+..|...+..+ +++++.-.+++++.+....|| ++.++...
T Consensus 323 ~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 323 PESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp TTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred CCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 44444 67888888888877 554443334456666554555 66566544
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=4e-13 Score=126.23 Aligned_cols=278 Identities=10% Similarity=0.061 Sum_probs=174.5
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
..|++|.|++ +...+++.+.+++++.|..... .. ..++...+.++.+.+ ++.+++++.
T Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~-----~~~~~~~~~~~~~~~-~g~l~~~~~ 63 (333)
T 2dg1_A 6 QDLPTLFYSG-KSNSAVPIISESELQTITAEPW---------------LE-----ISKKGLQLEGLNFDR-QGQLFLLDV 63 (333)
T ss_dssp CCCCBCCSCG-GGGCSSCCCCGGGSCEEECEEE---------------EE-----EESSCCCEEEEEECT-TSCEEEEET
T ss_pred cccceeeecC-CccceeEEeecccCccccccee---------------EE-----EeccCccccCcEECC-CCCEEEEEC
Confidence 4578899986 4556777788999999932210 00 112333456677765 777888888
Q ss_pred CCCcEEEEECCCCeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCC----CcEEEEECCCCceeeeec--CCCCCeEEE
Q 013545 124 YDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTED----VQVRLCDIASGAISQTLS--GHRDGIMTV 196 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d----~~I~vwdl~~~~~~~~l~--~h~~~v~~v 196 (441)
.++.|.+||..+++..... .....+..+.+.+++ .++++...+ +.|.+||.+++.....+. .+...+..+
T Consensus 64 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg---~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i 140 (333)
T 2dg1_A 64 FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG---RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDM 140 (333)
T ss_dssp TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS---CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEE
T ss_pred CCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC---cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccce
Confidence 9999999999888765443 234557777777653 356655555 589999998887543333 345678999
Q ss_pred EEecCCCcEEEEeecC----CcEEEEEcC--CCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545 197 EWSTSSEWILVTGGCD----GAIRFWDIR--RAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG 270 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~D----g~I~iWD~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (441)
.++|++. ++++...+ +...||.+. .+....
T Consensus 141 ~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~------------------------------------------- 176 (333)
T 2dg1_A 141 VFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTP------------------------------------------- 176 (333)
T ss_dssp EECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEE-------------------------------------------
T ss_pred EECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEE-------------------------------------------
Confidence 9999986 55554421 233444332 211000
Q ss_pred ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCC-CCceeeeee-eE-
Q 013545 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVES-GRNTLVNFE-TV- 346 (441)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~-~~~~~~~~~-~~- 346 (441)
...+...+..++|+|+|++| ++.+.+++|.+||+.+ +.. ...+. ..
T Consensus 177 -----------------------------~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~-~~~~~~~~~ 226 (333)
T 2dg1_A 177 -----------------------------IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT-IQPFGATIP 226 (333)
T ss_dssp -----------------------------EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS-EEEEEEEEE
T ss_pred -----------------------------eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC-cccccceEE
Confidence 00112346789999999855 5556788999999964 221 11111 00
Q ss_pred -Eec-cCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeeccccc------ceEEEEEcCCCCeEEEeecCC----
Q 013545 347 -RLQ-TSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYE------YVNCCCFSSQDQELYTGGNDR---- 413 (441)
Q Consensus 347 -~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~------~v~~v~fspd~~~l~s~s~D~---- 413 (441)
... ...+..+++.+++.+.+... ...+.+||. +++.+..+..+.. .+.+++|+||++.|+.++.++
T Consensus 227 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~ 305 (333)
T 2dg1_A 227 YYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGG 305 (333)
T ss_dssp EECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTC
T ss_pred EecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCC
Confidence 111 12455678888888666553 467999998 5777766654443 689999999987776544442
Q ss_pred cEEEeCCC
Q 013545 414 QILVWCPS 421 (441)
Q Consensus 414 ~i~vW~~~ 421 (441)
.-.||.+.
T Consensus 306 ~~~l~~~~ 313 (333)
T 2dg1_A 306 GSMLYTVN 313 (333)
T ss_dssp CEEEEEEE
T ss_pred CceEEEEe
Confidence 24455443
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.59 E-value=1.8e-12 Score=123.45 Aligned_cols=273 Identities=11% Similarity=0.024 Sum_probs=172.2
Q ss_pred EEEccCCCCcEEEEee----------CCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 48 SLQVDLTEERYLLSGA----------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 48 ~l~~s~~~~~~l~s~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.++|+| ++++|+.++ .|++|.+||..+.+... .+ .+.... ..+......+.++| |++
T Consensus 54 ~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~---------~i-~~~~~~-~~~g~~p~~i~~sp-dg~ 120 (361)
T 2oiz_A 54 HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEK---------EI-SLPPKR-VQGLNYDGLFRQTT-DGK 120 (361)
T ss_dssp EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEE---------EE-EECTTB-CCBCCCGGGEEECT-TSS
T ss_pred ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEE---------EE-EcCccc-cccCCCcceEEECC-CCC
Confidence 899997 577887775 37789999987654210 11 111000 01112334466665 788
Q ss_pred EEEEEeC--CCcEEEEECCCCeEEEE-EecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-Cceee------eec
Q 013545 118 LFVTGSY--DHYVKVWDTNCTRVVMN-FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQ------TLS 187 (441)
Q Consensus 118 ~l~sgs~--D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~------~l~ 187 (441)
+|+++.. +++|.+||+.+++.+.. +...+.. .+.+.|.. ...+++.+.|+.+.+|+++. ++... .+.
T Consensus 121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~-~v~~~p~~--~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~ 197 (361)
T 2oiz_A 121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCW-SVIPQPNR--PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS 197 (361)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEE-EEEECTTS--SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred EEEEECCCCCCeEEEEECCCCcEEEEEecCCCcc-eeEEcCCC--CeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence 8887763 68999999999998877 6655432 23345543 24567788899999999865 55441 222
Q ss_pred CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCcee--eEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545 188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF--RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS 265 (441)
Q Consensus 188 ~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (441)
.+... ..+.++|++..+ +..+.++.|.++|+...... ..+.....
T Consensus 198 ~~~~~-~~~~~~~~g~~~-~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~------------------------------- 244 (361)
T 2oiz_A 198 VKDDP-IFIAPALDKDKA-HFVSYYGNVYSADFSGDEVKVDGPWSLLND------------------------------- 244 (361)
T ss_dssp TTTSC-BCSCCEECSSEE-EEEBTTSEEEEEECSSSSCEEEEEEESCCH-------------------------------
T ss_pred CCCCc-eEEEecccCCEE-EEEeCCCeEEEEEecCCCceecccccccCc-------------------------------
Confidence 22222 233446776644 44567899999998643211 00000000
Q ss_pred CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec-----------CCcEEEeeCC
Q 013545 266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-----------DSRIRLWDVE 334 (441)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-----------D~~i~~wd~~ 334 (441)
.....+ . .......++|+||+..+..+.. ..+|.+||+.
T Consensus 245 ---------------------~~~~~~-------~--~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~ 294 (361)
T 2oiz_A 245 ---------------------EDKAKN-------W--VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK 294 (361)
T ss_dssp ---------------------HHHHTT-------C--EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT
T ss_pred ---------------------cccccc-------c--ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC
Confidence 000000 0 0011112679999877665432 3489999999
Q ss_pred CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCC--ceEeeecccccceEEEEEcCCCCe
Q 013545 335 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG--KTCLTFRGHYEYVNCCCFSSQDQE 405 (441)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~--~~~~~l~gh~~~v~~v~fspd~~~ 405 (441)
+++. ...+.... +..+++++|+..+++++...+.+||..++ +.+.++..+......++|+|||++
T Consensus 295 t~~~----v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~~ 361 (361)
T 2oiz_A 295 TKQR----VARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGGT 361 (361)
T ss_dssp TTEE----EEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSCC
T ss_pred CCcE----EEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCCC
Confidence 8753 22333333 88899999999999887789999999999 999998778888899999999864
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.59 E-value=2.9e-13 Score=141.47 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=107.4
Q ss_pred eeeecCCCCc-----eeEEEccCCCCcEEEEeeCC---------CcEEEEECCCCcccCCCCceeccceeEEeecccccC
Q 013545 36 KEIVSPHKGS-----INSLQVDLTEERYLLSGASD---------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101 (441)
Q Consensus 36 ~~~~~~H~~~-----V~~l~~s~~~~~~l~s~s~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (441)
..++.+|... .+.++||| ++++|+.++.+ +.+.+||+.++... ....
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~------------------~l~~ 109 (740)
T 4a5s_A 49 SVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI------------------TEER 109 (740)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC------------------CSSC
T ss_pred EEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEE------------------Eccc
Confidence 4556677533 34478897 58899999987 45569999876431 1124
Q ss_pred cccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCe---e-----------------EEEeeccCCCCcc
Q 013545 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK---V-----------------YRTAMSPLAASHM 161 (441)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~---~-----------------~~~~~~~~~~~~~ 161 (441)
|...+....|+| ||+.||.+ .|+.|.+||+.++.... +...+. + ..+.++|++.
T Consensus 110 ~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~--- 183 (740)
T 4a5s_A 110 IPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT--- 183 (740)
T ss_dssp CCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS---
T ss_pred CCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCcceEECCCCC---
Confidence 556677888887 88899888 46899999998877442 222221 1 2356777653
Q ss_pred EEEEEeCC------------------------------------CcEEEEECCC---Cc--eeeeec------CCCCCeE
Q 013545 162 LIAAGTED------------------------------------VQVRLCDIAS---GA--ISQTLS------GHRDGIM 194 (441)
Q Consensus 162 ~las~s~d------------------------------------~~I~vwdl~~---~~--~~~~l~------~h~~~v~ 194 (441)
.||.++.| ..|++||+++ ++ ....+. +|...+.
T Consensus 184 ~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 263 (740)
T 4a5s_A 184 FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLC 263 (740)
T ss_dssp EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEE
T ss_pred EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEE
Confidence 45554321 1588899998 73 222333 4788899
Q ss_pred EEEEecCCCcEEEEee----cCCcEEEEEcCCCc
Q 013545 195 TVEWSTSSEWILVTGG----CDGAIRFWDIRRAG 224 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s----~Dg~I~iWD~~~~~ 224 (441)
.++|+|+++. ++... .+..|++||+.+++
T Consensus 264 ~~~wspdg~~-~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 264 DVTWATQERI-SLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEEEEETTEE-EEEEEESSTTEEEEEEEEEETTT
T ss_pred EEEEeCCCeE-EEEEeCCCCCEEEEEEEECCCCc
Confidence 9999999984 34332 23479999988764
No 173
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.58 E-value=6.8e-13 Score=124.71 Aligned_cols=273 Identities=9% Similarity=0.008 Sum_probs=177.7
Q ss_pred CCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 013545 64 SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK 143 (441)
Q Consensus 64 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~ 143 (441)
.+++|.+||.++++.... ++.. ............+.+. ++.++++...+++|.+||..+++.+.++.
T Consensus 15 ~~~~l~~~d~~t~~~~~~---------i~~~--~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~ 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENE---------VFYR--ANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT 81 (328)
T ss_dssp CCBEEEEEETTTTEEECS---------HHHH--HHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE
T ss_pred CCceEEEEECCCCEEhhh---------hHhh--hcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC
Confidence 489999999987653210 0000 0000111123344443 45566677778999999999999988887
Q ss_pred cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCC-----CCeEEEEEecCCCcEEEEee-cCCcEEE
Q 013545 144 MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-----DGIMTVEWSTSSEWILVTGG-CDGAIRF 217 (441)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~-----~~v~~v~fsp~~~~~l~s~s-~Dg~I~i 217 (441)
.......++++++. .+.++...++.|.+||+++++....+.... .....+++ .+ ..++++.. .+++|.+
T Consensus 82 ~~~~p~~i~~~~~g---~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~-~~lyv~~~~~~~~v~v 156 (328)
T 3dsm_A 82 GFTSPRYIHFLSDE---KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YG-KYVYVNCWSYQNRILK 156 (328)
T ss_dssp CCSSEEEEEEEETT---EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ET-TEEEEEECTTCCEEEE
T ss_pred CCCCCcEEEEeCCC---eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-EC-CEEEEEcCCCCCEEEE
Confidence 55566777776642 345554478999999999998876665322 14456777 33 45666654 4889999
Q ss_pred EEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCccccc
Q 013545 218 WDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQ 297 (441)
Q Consensus 218 WD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (441)
+|+.+++....+..
T Consensus 157 iD~~t~~~~~~i~~------------------------------------------------------------------ 170 (328)
T 3dsm_A 157 IDTETDKVVDELTI------------------------------------------------------------------ 170 (328)
T ss_dssp EETTTTEEEEEEEC------------------------------------------------------------------
T ss_pred EECCCCeEEEEEEc------------------------------------------------------------------
Confidence 99987654332210
Q ss_pred ccceeeccCeEEEEEccCCCEEEEeecC----------CcEEEeeCCCCCceeeeeeeEEec-cCcceEEEeeCCCcEEE
Q 013545 298 DRATAHYGAVTGLKVTEDGMYLLSAGSD----------SRIRLWDVESGRNTLVNFETVRLQ-TSKPIQLATTQDPAVVF 366 (441)
Q Consensus 298 ~~~~~h~~~v~~l~~s~dg~~l~sgs~D----------~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 366 (441)
......++++|+|+++++...+ ++|.++|..+++.. ...... ...+..+++++++..++
T Consensus 171 ------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~~~g~~p~~la~~~d~~~ly 240 (328)
T 3dsm_A 171 ------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKFKLGDWPSEVQLNGTRDTLY 240 (328)
T ss_dssp ------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEECCTTCCCEEEEECTTSCEEE
T ss_pred ------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE----EEEecCCCCCceeEEEecCCCEEE
Confidence 0113457889999988777655 78999999876521 122221 13577899999999888
Q ss_pred EeCCCceEEEEccCCceEe--eecccccceEEEEEcCC-CCeEEEe----ecCCcEEEeCCCCCCCCCccCC
Q 013545 367 VPCMTAVKAFDIWSGKTCL--TFRGHYEYVNCCCFSSQ-DQELYTG----GNDRQILVWCPSRHISDGVDAG 431 (441)
Q Consensus 367 ~~~~~~~~~wd~~~~~~~~--~l~gh~~~v~~v~fspd-~~~l~s~----s~D~~i~vW~~~~~~~~~~~~~ 431 (441)
+... .+.+||..+++... .+..+......++++|+ +..+++. ..++.|.+|++.......+..|
T Consensus 241 v~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G 311 (328)
T 3dsm_A 241 WINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVG 311 (328)
T ss_dssp EESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEE
T ss_pred EEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEec
Confidence 8766 88999998887542 12222466899999995 5555565 5788999999983333333333
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.57 E-value=4.7e-12 Score=127.22 Aligned_cols=320 Identities=15% Similarity=0.090 Sum_probs=189.2
Q ss_pred CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECC-
Q 013545 56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN- 134 (441)
Q Consensus 56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~- 134 (441)
+.++++...+++|.++|..+++... .+. . + ..+..+.++| |+.++++++.|+.|.+||+.
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~------------~i~--~--g--~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKT------------VLD--T--G--YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEE------------EEE--C--S--SCEEEEEECT-TSCEEEEEETTSEEEEEETTS
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEE------------EEe--C--C--CCccceEECC-CCCEEEEEcCCCeEEEEECCC
Confidence 4678899999999999998764310 000 0 1 1233566665 89999999999999999995
Q ss_pred -CCeEEEEEecCCeeEEEeec----cCCCCccEEEEEeCCCcEEEEECCCCceeeeecC----------CCC-CeEEEEE
Q 013545 135 -CTRVVMNFKMPGKVYRTAMS----PLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG----------HRD-GIMTVEW 198 (441)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~----~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~----------h~~-~v~~v~f 198 (441)
+++.+.++........+.++ |++ ..++++...++.|.++|..+.+.++++.- |.. .+..+.+
T Consensus 228 ~t~~~v~~i~~G~~P~~ia~s~~~~pDG--k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 228 KEPTTVAEIKIGSEARSIETSKMEGWED--KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTT--TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCCcEeEEEecCCCCceeEEccccCCCC--CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence 78888888776666778888 343 34555566679999999999988776542 222 5667777
Q ss_pred ecCCCcEEEEeecCCcEEEEEcCCCce-----------ee--EeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545 199 STSSEWILVTGGCDGAIRFWDIRRAGC-----------FR--VLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS 265 (441)
Q Consensus 199 sp~~~~~l~s~s~Dg~I~iWD~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (441)
++++..++++...+|.|.++|....+. .. .+......+ +.... .
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~------~va~~-~---------------- 362 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF------ITAAN-A---------------- 362 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE------EEEEG-G----------------
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE------EEEeC-C----------------
Confidence 777665556666667777777654311 00 011100000 00000 0
Q ss_pred CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEee-cCCcEEEeeCCCCCc---ee
Q 013545 266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAG-SDSRIRLWDVESGRN---TL 340 (441)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs-~D~~i~~wd~~~~~~---~~ 340 (441)
.+.+..... ..+.+...+..+ ....|.+.-..+ ++|++.. .+++. .+++|.++|..+.+. ..
T Consensus 363 --sn~V~ViD~----~t~kl~~~i~vg------g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~ 429 (567)
T 1qks_A 363 --RNKLVVIDT----KEGKLVAIEDTG------GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW 429 (567)
T ss_dssp --GTEEEEEET----TTTEEEEEEECS------SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred --CCeEEEEEC----CCCcEEEEEecc------CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccC
Confidence 000000000 000000000000 011243322222 6887544 44443 568999999987331 11
Q ss_pred eeeeeEEeccCcceEEEeeCCCcEEEEeCC--------CceEEEEccCC-----c-eEeeec--------ccccceEEEE
Q 013545 341 VNFETVRLQTSKPIQLATTQDPAVVFVPCM--------TAVKAFDIWSG-----K-TCLTFR--------GHYEYVNCCC 398 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~wd~~~~-----~-~~~~l~--------gh~~~v~~v~ 398 (441)
.....+.........+.++|++..+++... ..+-++|+.+. . ....+. .-.+.+..+.
T Consensus 430 kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (567)
T 1qks_A 430 KILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGE 509 (567)
T ss_dssp SEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEE
T ss_pred EEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeee
Confidence 122333333344456778999998888652 37999999776 2 112332 1235689999
Q ss_pred EcCCCCeEEEee-----cCCcEEEeCCCCCCCCCccCCc
Q 013545 399 FSSQDQELYTGG-----NDRQILVWCPSRHISDGVDAGP 432 (441)
Q Consensus 399 fspd~~~l~s~s-----~D~~i~vW~~~~~~~~~~~~~~ 432 (441)
|+|||+++...- .++.|.|.|..+.++...+.++
T Consensus 510 ~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 548 (567)
T 1qks_A 510 FNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 548 (567)
T ss_dssp ECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred ECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCCC
Confidence 999999877542 3789999999998877666653
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.56 E-value=1.2e-13 Score=132.59 Aligned_cols=239 Identities=10% Similarity=-0.028 Sum_probs=149.5
Q ss_pred EEEeeCCCCEEEEEeC-CCc--EEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545 109 AIWYPVDTGLFVTGSY-DHY--VKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184 (441)
Q Consensus 109 ~~~~~~~~~~l~sgs~-D~~--i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~ 184 (441)
..|+| |+++|+.++. |+. |.+||+.+++........+. +....++|++ ..|+.++.+..|++||+.+++...
T Consensus 41 ~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg---~~l~~~~~~~~l~~~d~~~g~~~~ 116 (388)
T 3pe7_A 41 KCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD---DALFYVKDGRNLMRVDLATLEENV 116 (388)
T ss_dssp CCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS---SEEEEEETTTEEEEEETTTCCEEE
T ss_pred ccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC---CEEEEEeCCCeEEEEECCCCccee
Confidence 45665 8888988887 664 88889998887654433322 2245677754 367777888899999999998776
Q ss_pred eecCCCCCeEEEE--EecCCCcEEEEe----------------------ecCCcEEEEEcCCCceeeEeccCCccccCCC
Q 013545 185 TLSGHRDGIMTVE--WSTSSEWILVTG----------------------GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240 (441)
Q Consensus 185 ~l~~h~~~v~~v~--fsp~~~~~l~s~----------------------s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~ 240 (441)
.+..+...+.... ++|+++. ++.. +.+..|.+||+.++....
T Consensus 117 ~~~~~~~~~~~~~~~~~~dg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~------------- 182 (388)
T 3pe7_A 117 VYQVPAEWVGYGTWVANSDCTK-LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV------------- 182 (388)
T ss_dssp EEECCTTEEEEEEEEECTTSSE-EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-------------
T ss_pred eeechhhcccccceeECCCCCe-eccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-------------
Confidence 6666666554444 4788874 4421 123455666655432111
Q ss_pred CcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEE
Q 013545 241 PLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYL 319 (441)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l 319 (441)
...+...+..++|+| ||+.|
T Consensus 183 -----------------------------------------------------------l~~~~~~~~~~~~sp~dg~~l 203 (388)
T 3pe7_A 183 -----------------------------------------------------------ILQENQWLGHPIYRPYDDSTV 203 (388)
T ss_dssp -----------------------------------------------------------EEEESSCEEEEEEETTEEEEE
T ss_pred -----------------------------------------------------------eecCCccccccEECCCCCCEE
Confidence 123345578899999 99998
Q ss_pred EEeecC------CcEEEeeCCCCCceeeeeeeEEecc--CcceEEEeeCCCcEEEEeCC----C--ceEEEEccCCce--
Q 013545 320 LSAGSD------SRIRLWDVESGRNTLVNFETVRLQT--SKPIQLATTQDPAVVFVPCM----T--AVKAFDIWSGKT-- 383 (441)
Q Consensus 320 ~sgs~D------~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~--~~~~wd~~~~~~-- 383 (441)
+..+.+ ..|.++|+.++..... .... .......++||+..++..+. . .+.+||+.+++.
T Consensus 204 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (388)
T 3pe7_A 204 AFCHEGPHDLVDARMWLINEDGTNMRKV-----KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ 278 (388)
T ss_dssp EEEECSCTTTSSCSEEEEETTSCCCEES-----CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE
T ss_pred EEEEecCCCCCcceEEEEeCCCCceEEe-----eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE
Confidence 877653 3788888876542211 0011 12335678999986644321 1 399999998874
Q ss_pred Eeeecccccc---eEEEEEcCCCCeEEEe---------ecCCcEEEeCCCCCCCCCcc
Q 013545 384 CLTFRGHYEY---VNCCCFSSQDQELYTG---------GNDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 384 ~~~l~gh~~~---v~~v~fspd~~~l~s~---------s~D~~i~vW~~~~~~~~~~~ 429 (441)
+..+.++... ...++|||||++|+.. ..+..|.+|++.++....+.
T Consensus 279 l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (388)
T 3pe7_A 279 LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA 336 (388)
T ss_dssp EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE
T ss_pred EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec
Confidence 3344442211 1224799999998843 45678999999887654433
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.56 E-value=4.1e-13 Score=138.47 Aligned_cols=242 Identities=14% Similarity=0.144 Sum_probs=139.8
Q ss_pred cccceeEEEEeeCCCCEEEEEeCC----------CcEEEEECCC------CeEEEEE-ecCCeeEEEeeccCCCCccEEE
Q 013545 102 HKYAISSAIWYPVDTGLFVTGSYD----------HYVKVWDTNC------TRVVMNF-KMPGKVYRTAMSPLAASHMLIA 164 (441)
Q Consensus 102 h~~~V~~~~~~~~~~~~l~sgs~D----------~~i~iWd~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~la 164 (441)
|...+..+.|+| |++.|++++.| .+|.+||+.+ +...... .....+....++|++. .|+
T Consensus 128 ~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~---~la 203 (662)
T 3azo_A 128 GGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGR---QAV 203 (662)
T ss_dssp TCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSS---EEE
T ss_pred CCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCC---EEE
Confidence 556677788887 88999998887 5899999987 5543322 2234455667887653 555
Q ss_pred EEeCC--------CcEEEEECC-CC---ceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEE--EcCCCceeeEec
Q 013545 165 AGTED--------VQVRLCDIA-SG---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW--DIRRAGCFRVLD 230 (441)
Q Consensus 165 s~s~d--------~~I~vwdl~-~~---~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iW--D~~~~~~~~~~~ 230 (441)
.++.+ ..|++||++ ++ +......+|...+..+.|+|+++ ++++++.++..+|| |+.++....+..
T Consensus 204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~ 282 (662)
T 3azo_A 204 WLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCR 282 (662)
T ss_dssp EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred EEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccc
Confidence 55533 479999999 57 44444556678899999999998 77888888855555 443332211110
Q ss_pred cCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEE
Q 013545 231 QSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGL 310 (441)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 310 (441)
.... . ..+. ..-.+..+
T Consensus 283 ~~~~-~------------------------------------~~p~--------------------------w~~~~~~~ 299 (662)
T 3azo_A 283 REEE-F------------------------------------AGPL--------------------------WTPGMRWF 299 (662)
T ss_dssp CSSB-S------------------------------------SCCC--------------------------CSTTCCSE
T ss_pred cccc-c------------------------------------cCcc--------------------------ccccCceE
Confidence 0000 0 0000 00013457
Q ss_pred EEccCCCEEEEeecCCcEEEe--eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe-CC--C--ceEEEEccCCce
Q 013545 311 KVTEDGMYLLSAGSDSRIRLW--DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CM--T--AVKAFDIWSGKT 383 (441)
Q Consensus 311 ~~s~dg~~l~sgs~D~~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~--~~~~wd~~~~~~ 383 (441)
+|+|++.++++++. ++++|| |+.+++. . .+.........+ .++++..++.. .. . .+..+|+.+++.
T Consensus 300 ~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~--~---~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 300 APLANGLIAVVHGK-GAAVLGILDPESGEL--V---DAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EECTTSCEEEEEBS-SSCEEEEEETTTTEE--E---ECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred eEeCCCEEEEEEEc-CccEEEEEECCCCcE--E---EecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 89999999999998 999999 5554431 1 111111111122 14444443332 22 2 455556667765
Q ss_pred EeeecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545 384 CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418 (441)
Q Consensus 384 ~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW 418 (441)
......|...+....+++.....+.+..+..|..|
T Consensus 373 ~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~ 407 (662)
T 3azo_A 373 RTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAH 407 (662)
T ss_dssp EEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEE
T ss_pred EEeecCCcccCCccccCcceEEEEEcCCCCEEEEE
Confidence 54445555444444455444444544444455444
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.55 E-value=2.1e-12 Score=121.38 Aligned_cols=246 Identities=13% Similarity=0.139 Sum_probs=160.5
Q ss_pred CCceeEEEccCCCCcEEEEeeCC------------------------CcEEEEECCCCcccCCCCceeccceeEEeeccc
Q 013545 43 KGSINSLQVDLTEERYLLSGASD------------------------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQH 98 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~D------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (441)
.+.|.+|+++| +++++++.+.+ ++|.+||..+++... . .
T Consensus 23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-------------~---~ 85 (329)
T 3fvz_A 23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ-------------S---S 85 (329)
T ss_dssp CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE-------------E---E
T ss_pred cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe-------------c---c
Confidence 47899999996 57888888888 468888876553210 0 0
Q ss_pred ccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe-EEEEEec-------C---CeeEEEeeccCCCCccEEEEEe
Q 013545 99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-VVMNFKM-------P---GKVYRTAMSPLAASHMLIAAGT 167 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~-~~~~~~~-------~---~~~~~~~~~~~~~~~~~las~s 167 (441)
..++-.....+++.+ ++.++++...++.|++||..... .+..+.. . .....+++.+. +..++++.+
T Consensus 86 ~~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~--~g~lyv~d~ 162 (329)
T 3fvz_A 86 GKNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS--TGAVFVSDG 162 (329)
T ss_dssp CTTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT--TCCEEEEEC
T ss_pred CCCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC--CCeEEEEeC
Confidence 113334566777775 78888998899999999986542 4444421 1 13556777762 234666665
Q ss_pred -CCCcEEEEECCCCceeeeecC----------CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccc
Q 013545 168 -EDVQVRLCDIASGAISQTLSG----------HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL 236 (441)
Q Consensus 168 -~d~~I~vwdl~~~~~~~~l~~----------h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~ 236 (441)
.++.|++|| .+++.+..+.. +......++++|++..++++...++.|++||..+++.+..+...
T Consensus 163 ~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~---- 237 (329)
T 3fvz_A 163 YCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA---- 237 (329)
T ss_dssp SSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT----
T ss_pred CCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc----
Confidence 689999999 56777666642 33448899999985557888888999999998866554433110
Q ss_pred cCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc--
Q 013545 237 GRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-- 314 (441)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-- 314 (441)
.+...+.+++|+|
T Consensus 238 -----------------------------------------------------------------~~~~~~~~~~~~pg~ 252 (329)
T 3fvz_A 238 -----------------------------------------------------------------SFGRNVFAISYIPGF 252 (329)
T ss_dssp -----------------------------------------------------------------TTTTCEEEEEEETTE
T ss_pred -----------------------------------------------------------------ccCCCcceeeecCCE
Confidence 1112355667777
Q ss_pred ----CCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEcc
Q 013545 315 ----DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIW 379 (441)
Q Consensus 315 ----dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~ 379 (441)
+|...++...+.+|++||+.+++... .+.........+..+++++++.++++... ..+++|++.
T Consensus 253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~-~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIID-VFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEEEECCCCTTCSCCCCEEEEETTTCCEEE-EECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEEeCCCEEeccCCCcEEEEEEcCCCeEEE-EEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 55555555566799999998876321 11110122345778899999965555433 578888874
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=2.5e-12 Score=118.78 Aligned_cols=229 Identities=10% Similarity=0.097 Sum_probs=151.2
Q ss_pred eeEEEEeeCCCC-EEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee
Q 013545 106 ISSAIWYPVDTG-LFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS 183 (441)
Q Consensus 106 V~~~~~~~~~~~-~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~ 183 (441)
..+++|.+ +++ +++++..++.|..||..++ ...+.. .+.+..+.+.+++ .++++...++.|.+||.++++..
T Consensus 30 ~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg---~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 30 TEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG---HLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp EEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC---CEEEEETTTTEEEEECSTTCCEE
T ss_pred ccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC---cEEEEecCCCeEEEEcCCCCcEE
Confidence 44677776 566 7888889999999999887 444443 3446677777643 36666666788999999888754
Q ss_pred eeecCC----CCCeEEEEEecCCCcEEEEeecCC---------------cEEEEEcCCCceeeEeccCCccccCCCCccc
Q 013545 184 QTLSGH----RDGIMTVEWSTSSEWILVTGGCDG---------------AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLK 244 (441)
Q Consensus 184 ~~l~~h----~~~v~~v~fsp~~~~~l~s~s~Dg---------------~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (441)
...... ...+..++++|+|+ ++++.+..| .-.||.+...+.+..
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~---------------- 166 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSA---------------- 166 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEE----------------
T ss_pred EEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCCCCEEE----------------
Confidence 433221 23456799999987 566632111 113333221110000
Q ss_pred ccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec
Q 013545 245 RKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS 324 (441)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 324 (441)
...+......++|+|||+.+++.+.
T Consensus 167 -------------------------------------------------------~~~~~~~~~gi~~s~dg~~lv~~~~ 191 (296)
T 3e5z_A 167 -------------------------------------------------------PIRDRVKPNGLAFLPSGNLLVSDTG 191 (296)
T ss_dssp -------------------------------------------------------EECCCSSEEEEEECTTSCEEEEETT
T ss_pred -------------------------------------------------------eecCCCCCccEEECCCCCEEEEeCC
Confidence 0112234678999999999888888
Q ss_pred CCcEEEeeCC-CCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEE-cCC
Q 013545 325 DSRIRLWDVE-SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF-SSQ 402 (441)
Q Consensus 325 D~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f-spd 402 (441)
+++|++||+. .++.. ............+..+++.+++.+.++. ...+.+|+.. ++.+..+..+.. +.+++| +||
T Consensus 192 ~~~i~~~~~~~~g~~~-~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d 267 (296)
T 3e5z_A 192 DNATHRYCLNARGETE-YQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPE 267 (296)
T ss_dssp TTEEEEEEECSSSCEE-EEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTT
T ss_pred CCeEEEEEECCCCcCc-CCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCC
Confidence 9999999997 33320 1011111123445567888999876666 7789999985 888888888888 999999 589
Q ss_pred CCeEEEeecCCcEE
Q 013545 403 DQELYTGGNDRQIL 416 (441)
Q Consensus 403 ~~~l~s~s~D~~i~ 416 (441)
++.|+.++.++..+
T Consensus 268 ~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 268 GRTLYMTVSTEFWS 281 (296)
T ss_dssp SCEEEEEETTEEEE
T ss_pred CCEEEEEcCCeEEE
Confidence 99999888775433
No 179
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.54 E-value=7.2e-12 Score=130.30 Aligned_cols=247 Identities=11% Similarity=0.044 Sum_probs=157.8
Q ss_pred cCcccceeEEEEeeCCCCEEEEEeCCC-----cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCc---
Q 013545 100 HGHKYAISSAIWYPVDTGLFVTGSYDH-----YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ--- 171 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~sgs~D~-----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~--- 171 (441)
.+|+..+..+.|+| |+++||.++.++ +|++||+.+++.+........+..+.|+|++. .|+.++.+..
T Consensus 121 ~~~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~---~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 121 DDGTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGK---GMFYNAYPQQDGK 196 (710)
T ss_dssp TTSCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSS---EEEEEECCCCSSC
T ss_pred cCCCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCC---EEEEEEECCcccc
Confidence 35666777888886 888888766543 89999999998765322222244567887643 4555555554
Q ss_pred -------------EEEEECCCCce----eeeecCCCCCeEEEEEecCCCcEEEEeec----CCcEEEEEcCC------Cc
Q 013545 172 -------------VRLCDIASGAI----SQTLSGHRDGIMTVEWSTSSEWILVTGGC----DGAIRFWDIRR------AG 224 (441)
Q Consensus 172 -------------I~vwdl~~~~~----~~~l~~h~~~v~~v~fsp~~~~~l~s~s~----Dg~I~iWD~~~------~~ 224 (441)
|++|++.++.. +.....|...+..+.|+|++++++++... +..|.+||+.+ +.
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 99999988763 22233456678899999999976554431 56899999764 11
Q ss_pred -eeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceee
Q 013545 225 -CFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH 303 (441)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 303 (441)
.+.. +..+
T Consensus 277 ~~~~~-----------------------------------------------------------------------l~~~ 285 (710)
T 2xdw_A 277 LKWVK-----------------------------------------------------------------------LIDN 285 (710)
T ss_dssp CCCEE-----------------------------------------------------------------------EECS
T ss_pred cceEE-----------------------------------------------------------------------eeCC
Confidence 0000 0112
Q ss_pred ccCeEEEEEccCCCEEEEeecC----CcEEEeeCCCCCceeeeeeeEEeccC--cceEEEeeCCCcEEEEeCC---CceE
Q 013545 304 YGAVTGLKVTEDGMYLLSAGSD----SRIRLWDVESGRNTLVNFETVRLQTS--KPIQLATTQDPAVVFVPCM---TAVK 374 (441)
Q Consensus 304 ~~~v~~l~~s~dg~~l~sgs~D----~~i~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~ 374 (441)
...+.. .|+|+|..|+..+.+ ..|.+||+.++.... ...+..... ....+.+.+++.++++... ..+.
T Consensus 286 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~ 362 (710)
T 2xdw_A 286 FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK--WKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ 362 (710)
T ss_dssp SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG--CEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc--ceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEE
Confidence 222333 478888877655543 369999998764210 011111111 1223555656666555433 2467
Q ss_pred EEEccCCceEeeecccccceEEEEEcCCCCeEE-Eee---cCCcEEEeCCCCCC
Q 013545 375 AFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY-TGG---NDRQILVWCPSRHI 424 (441)
Q Consensus 375 ~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~-s~s---~D~~i~vW~~~~~~ 424 (441)
+|++.+|+.+..+..|.+.|..++++||++.|+ +.+ ..++|.+|++.++.
T Consensus 363 ~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 363 LHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 788878888888888888899999999997765 333 34689999998776
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.52 E-value=8.2e-12 Score=117.78 Aligned_cols=256 Identities=9% Similarity=0.057 Sum_probs=158.4
Q ss_pred CceeEEEccCCCCcEEEEe---------eCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 44 GSINSLQVDLTEERYLLSG---------ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~---------s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
..+..+++ +|++++.. +.++.|.+||+.++... .+ ..+..+.|+|
T Consensus 15 ~~~~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------~l------------~~~~~~~~Sp- 68 (347)
T 2gop_A 15 AYLSDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNNARR----------FI------------ENATMPRISP- 68 (347)
T ss_dssp CEEEEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE----------EE------------ESCEEEEECT-
T ss_pred EEcccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCCceE----------Ec------------ccCCCeEECC-
Confidence 44666666 45566543 23677999998765310 00 2355677876
Q ss_pred CCCEEEEEeCC---C--cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC---------------------
Q 013545 115 DTGLFVTGSYD---H--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE--------------------- 168 (441)
Q Consensus 115 ~~~~l~sgs~D---~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~--------------------- 168 (441)
|+++||.++.+ + .|.+||+.+++.......+. +..+.++|++. .|+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~---~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 144 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSR---KLLIVGFKRREDEDFIFEDDVPAWFDDL 144 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSS---EEEEEEECCCC---------CCCC----
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCC---EEEEEEccCCCcCCcEEEcccceeecCc
Confidence 78888887754 2 37788998887665555555 77788888643 3444432
Q ss_pred ------CCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC-------cEEEEEcCCCceeeEeccCCcc
Q 013545 169 ------DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG-------AIRFWDIRRAGCFRVLDQSQSQ 235 (441)
Q Consensus 169 ------d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg-------~I~iWD~~~~~~~~~~~~~~~~ 235 (441)
...|.+||+.+++.+..+.. . .+..+.|+|++ ++++++.+. ..+||.+.++. ...
T Consensus 145 ~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~------- 212 (347)
T 2gop_A 145 GFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK-EEK------- 212 (347)
T ss_dssp -----CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE-EEE-------
T ss_pred ccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCc-eEE-------
Confidence 25799999999887455554 4 78899999998 556665542 44555443221 110
Q ss_pred ccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccC
Q 013545 236 LGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED 315 (441)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 315 (441)
...+ ..+..+ +||
T Consensus 213 ----------------------------------------------------------------l~~~-~~~~~~--spd 225 (347)
T 2gop_A 213 ----------------------------------------------------------------MFEK-VSFYAV--DSD 225 (347)
T ss_dssp ----------------------------------------------------------------EEEE-ESEEEE--EEC
T ss_pred ----------------------------------------------------------------eccC-cceeeE--CCC
Confidence 0112 334443 999
Q ss_pred CCEEEEeecC--------CcEEEeeCCCCCceeeeeeeEEec-cCcceE-EEeeCCCcEEEEeC-CCceEEEEccCCceE
Q 013545 316 GMYLLSAGSD--------SRIRLWDVESGRNTLVNFETVRLQ-TSKPIQ-LATTQDPAVVFVPC-MTAVKAFDIWSGKTC 384 (441)
Q Consensus 316 g~~l~sgs~D--------~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~ 384 (441)
|++|+.++.+ ..|.+|| +++... +... ...... +.++ ++ +++++. ....++| +.+++.
T Consensus 226 g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~-----l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~- 294 (347)
T 2gop_A 226 GERILLYGKPEKKYMSEHNKLYIYD--GKEVMG-----ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI- 294 (347)
T ss_dssp SSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE-----SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-
T ss_pred CCEEEEEEccccCCccccceEEEEC--CCceEe-----ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-
Confidence 9998877754 3677887 433111 0001 111222 5566 66 555543 3578899 876665
Q ss_pred eeecccccceEEEEEcCCCCeEEEeecCCcE-EEeCCC
Q 013545 385 LTFRGHYEYVNCCCFSSQDQELYTGGNDRQI-LVWCPS 421 (441)
Q Consensus 385 ~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i-~vW~~~ 421 (441)
..+..+...|.+++|+| +.+++++.+++. +||..+
T Consensus 295 ~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 295 KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 44444578899999999 677787777764 788765
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=3.4e-12 Score=132.42 Aligned_cols=247 Identities=10% Similarity=0.012 Sum_probs=149.7
Q ss_pred ccCcccceeEEEEeeCCCCEEE-----EEeCCCcEEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEEeCCCc-
Q 013545 99 EHGHKYAISSAIWYPVDTGLFV-----TGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQ- 171 (441)
Q Consensus 99 ~~~h~~~V~~~~~~~~~~~~l~-----sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d~~- 171 (441)
..+|...+..+.|+| |+++|| +|+.+.+|++||+.+++.+......+. ...+.|++++. .|+.++.|..
T Consensus 116 a~~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~---~l~~~~~d~~~ 191 (695)
T 2bkl_A 116 SKDGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSK---GFYYEWLPTDP 191 (695)
T ss_dssp SSSSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSS---EEEEEECCCCT
T ss_pred ccCCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCC---EEEEEEecCCC
Confidence 346777788888886 899988 566678999999999886411111111 14567777643 5666666655
Q ss_pred ------------EEEEECCCCc----eeeeecCCCCCeEEEEEecCCCcEEEEeecC-C--cEEEEEcCCCceeeEeccC
Q 013545 172 ------------VRLCDIASGA----ISQTLSGHRDGIMTVEWSTSSEWILVTGGCD-G--AIRFWDIRRAGCFRVLDQS 232 (441)
Q Consensus 172 ------------I~vwdl~~~~----~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D-g--~I~iWD~~~~~~~~~~~~~ 232 (441)
|++|++.++. ++....+|...+.++.|+|+|++++++...+ + .|.+||...+.. ..
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~---- 266 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RL---- 266 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EE----
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EE----
Confidence 9999999886 3334445667889999999999865554433 3 444444322110 00
Q ss_pred CccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEE
Q 013545 233 QSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV 312 (441)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 312 (441)
+..+...+....+
T Consensus 267 -------------------------------------------------------------------l~~~~~~~~~~~~ 279 (695)
T 2bkl_A 267 -------------------------------------------------------------------LVKGVGAKYEVHA 279 (695)
T ss_dssp -------------------------------------------------------------------EEECSSCCEEEEE
T ss_pred -------------------------------------------------------------------eecCCCceEEEEe
Confidence 0112222334445
Q ss_pred ccCCCEEEEee---cCCcEEEeeCCCCCceeeeeeeEEecc-Cc-ceEEEeeCCCcEEEEeCC-CceEEEEcc-CCceEe
Q 013545 313 TEDGMYLLSAG---SDSRIRLWDVESGRNTLVNFETVRLQT-SK-PIQLATTQDPAVVFVPCM-TAVKAFDIW-SGKTCL 385 (441)
Q Consensus 313 s~dg~~l~sgs---~D~~i~~wd~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~-~~~~~wd~~-~~~~~~ 385 (441)
++|..+++.. .+++|.+||+.++.... ...+.... .. ...+++. ++.++++... ...++|.+. +++...
T Consensus 280 -~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 355 (695)
T 2bkl_A 280 -WKDRFYVLTDEGAPRQRVFEVDPAKPARAS--WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR 355 (695)
T ss_dssp -ETTEEEEEECTTCTTCEEEEEBTTBCSGGG--CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE
T ss_pred -cCCcEEEEECCCCCCCEEEEEeCCCCCccC--CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE
Confidence 5555444443 36889999998764210 01111111 11 2224444 4455554432 445666543 466667
Q ss_pred eeccc-ccceEEEEEcCCCCeEE----EeecCCcEEEeCCCCCCC
Q 013545 386 TFRGH-YEYVNCCCFSSQDQELY----TGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 386 ~l~gh-~~~v~~v~fspd~~~l~----s~s~D~~i~vW~~~~~~~ 425 (441)
.+..+ .+.|..++++||++.|+ +....++|.+|++.++..
T Consensus 356 ~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 356 TVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 77766 67788999999998877 344457899999988764
No 182
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.47 E-value=5.2e-11 Score=108.83 Aligned_cols=215 Identities=10% Similarity=0.075 Sum_probs=153.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCC--eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCC-CCC
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH-RDG 192 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h-~~~ 192 (441)
+++|++++.|+.|.+||.++++.+.++..+. .+..+.+.+++ .+++ +.++.|..||. +|+.+..+..+ ...
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG---~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG---EILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS---CEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC---CEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 5689999999999999999999998888654 46677777754 3566 34778999999 89998888765 357
Q ss_pred eEEEEEecCCCcEEEEeec-CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCc
Q 013545 193 IMTVEWSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGV 271 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~-Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (441)
+.++.+.|+++. +++.+. ++.|..+|. .++.+..+.....
T Consensus 79 ~~~~~~~~dG~~-lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~------------------------------------- 119 (276)
T 3no2_A 79 MQTARILPDGNA-LVAWCGHPSTILEVNM-KGEVLSKTEFETG------------------------------------- 119 (276)
T ss_dssp EEEEEECTTSCE-EEEEESTTEEEEEECT-TSCEEEEEEECCS-------------------------------------
T ss_pred ccccEECCCCCE-EEEecCCCCEEEEEeC-CCCEEEEEeccCC-------------------------------------
Confidence 889999999985 566665 666666664 4443322210000
Q ss_pred cccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545 272 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 351 (441)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~ 351 (441)
...+......+++.++|.+|++...+++|..||.. ++... .+ .. ..
T Consensus 120 ----------------------------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w-~~---~~-~~ 165 (276)
T 3no2_A 120 ----------------------------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN-SV---KL-SG 165 (276)
T ss_dssp ----------------------------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE-EE---EC-SS
T ss_pred ----------------------------CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE-EE---EC-CC
Confidence 00011123345789999999999999999999998 76422 12 11 23
Q ss_pred cceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccc------cceEEEEEcCCCCeEEEe
Q 013545 352 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHY------EYVNCCCFSSQDQELYTG 409 (441)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~------~~v~~v~fspd~~~l~s~ 409 (441)
.+......+++.++++... ..+..+|..+|+.+-++..+. ..+..++..++|..+++.
T Consensus 166 ~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 166 TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 4555667788888777655 469999999999988886543 237899999999998876
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.47 E-value=6.6e-10 Score=101.94 Aligned_cols=279 Identities=9% Similarity=0.079 Sum_probs=178.0
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~ 120 (441)
.+...+.+|++++ ++++.++...++.|.+||.. +... .+.. ..+...+..+++.+ ++.+++
T Consensus 12 ~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~-----------~~~~-----~~~~~~~~~i~~~~-~g~l~v 72 (299)
T 2z2n_A 12 NQDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKIT-----------EYPL-----PTPDAKVMCLTISS-DGEVWF 72 (299)
T ss_dssp SSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEE-----------EEEC-----SSTTCCEEEEEECT-TSCEEE
T ss_pred CcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeE-----------EecC-----CcccCceeeEEECC-CCCEEE
Confidence 4557899999986 57777777778999999976 3210 0000 01224566677665 677777
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecC---CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee-eecCCCCCeEEE
Q 013545 121 TGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTV 196 (441)
Q Consensus 121 sgs~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~h~~~v~~v 196 (441)
+...++.|..||.. +.. ..+..+ ..+..+.+.+. ..+.++...++.|.+||. +++... .+..+...+.++
T Consensus 73 ~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPN---GDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCC---CCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 77778899999986 332 333322 23555666553 245565556788999999 665433 233455678999
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
++.|++. ++++...++.|..||. ++.... +..
T Consensus 147 ~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~--------------------------------------------- 178 (299)
T 2z2n_A 147 TLGSDNA-LWFTENQNNAIGRITE-SGDITE-FKI--------------------------------------------- 178 (299)
T ss_dssp EECTTSC-EEEEETTTTEEEEECT-TCCEEE-EEC---------------------------------------------
T ss_pred EEcCCCC-EEEEeCCCCEEEEEcC-CCcEEE-eeC---------------------------------------------
Confidence 9999986 5666666788999987 432111 000
Q ss_pred ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL 356 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (441)
..+...+.+++++++|...++...++.|.+||. +++.. .+. .......+..+
T Consensus 179 ------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~--~~~-~~~~~~~~~~i 230 (299)
T 2z2n_A 179 ------------------------PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT--EFK-IPTPNARPHAI 230 (299)
T ss_dssp ------------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE--EEE-CSSTTCCEEEE
T ss_pred ------------------------CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE--EEE-CCCCCCCceeE
Confidence 001123678999999998888777889999998 55421 111 11122446677
Q ss_pred EeeCCCcEEEEe-CCCceEEEEccCCceEe-eecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545 357 ATTQDPAVVFVP-CMTAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 357 ~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~-~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~ 423 (441)
++.+++.+.+.. ....+..||. ++.... .+.++...+.++++ ++|+.+++.+ .+.|..+++.+.
T Consensus 231 ~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 888888766554 3468999998 454322 23455677999999 8888877765 455666666554
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.44 E-value=1.3e-12 Score=125.43 Aligned_cols=235 Identities=9% Similarity=-0.004 Sum_probs=139.1
Q ss_pred eeEEEEeeCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCeeEE-EeeccCCCCccEEEEEeCCCcEEEEECCCCc
Q 013545 106 ISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYR-TAMSPLAASHMLIAAGTEDVQVRLCDIASGA 181 (441)
Q Consensus 106 V~~~~~~~~~~~~l~sgs~D---~~i~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~las~s~d~~I~vwdl~~~~ 181 (441)
+..+.++| |+++|+..+.+ ..|.+||+.+++............. ..++|++ ..|+.++.++.|++||+.+++
T Consensus 38 ~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg---~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 38 FYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE---RAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp TTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS---SEEEEEETTTEEEEEETTTCC
T ss_pred eecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC---CEEEEEEcCCcEEEEECCCCC
Confidence 44456665 78887766543 4688889988875433222222211 4456654 467777778899999999988
Q ss_pred eeeeecCCCCCeEEEEEecCCCcEEEEeecCCc------------------------------EEEEEcCCCceeeEecc
Q 013545 182 ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA------------------------------IRFWDIRRAGCFRVLDQ 231 (441)
Q Consensus 182 ~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~------------------------------I~iWD~~~~~~~~~~~~ 231 (441)
.......+.. |+|+++. |+..+.+.. |.+||+.+++..
T Consensus 114 ~~~~~~~~~~------~~~~g~~-l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~----- 181 (396)
T 3c5m_A 114 EQVIYTVDEE------WKGYGTW-VANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE----- 181 (396)
T ss_dssp EEEEEECCTT------EEEEEEE-EECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE-----
T ss_pred cEEEEecccc------cCCCCCE-EEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE-----
Confidence 6655554444 3444432 233333333 444443322110
Q ss_pred CCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEE
Q 013545 232 SQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK 311 (441)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 311 (441)
....+...+..+.
T Consensus 182 -------------------------------------------------------------------~~~~~~~~~~~~~ 194 (396)
T 3c5m_A 182 -------------------------------------------------------------------VIHQDTAWLGHPI 194 (396)
T ss_dssp -------------------------------------------------------------------EEEEESSCEEEEE
T ss_pred -------------------------------------------------------------------eeccCCcccccce
Confidence 0113445678899
Q ss_pred Ecc-CCCEEEEeecC------CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC----CCc--eEEEEc
Q 013545 312 VTE-DGMYLLSAGSD------SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC----MTA--VKAFDI 378 (441)
Q Consensus 312 ~s~-dg~~l~sgs~D------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~wd~ 378 (441)
|+| ++..|+..+.+ .+|.+||+.+++... +.. .........+.+++++..++... ... +.+||+
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK--IKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE--SSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE--eec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence 999 78877665543 468889987654211 100 00011234568899998655542 123 899999
Q ss_pred cCCceEeeecccccceEEEEEcC-CCCeEEEee----------------cCCcEEEeCCCCCCCCCcc
Q 013545 379 WSGKTCLTFRGHYEYVNCCCFSS-QDQELYTGG----------------NDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 379 ~~~~~~~~l~gh~~~v~~v~fsp-d~~~l~s~s----------------~D~~i~vW~~~~~~~~~~~ 429 (441)
.+++...... ... .. ++|+| ||++|++++ .+..|.+|++.++....+.
T Consensus 272 ~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 272 ETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp TTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEE
T ss_pred CCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEcc
Confidence 8886543221 112 23 89999 999988754 3478999999887654443
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.43 E-value=4.6e-11 Score=108.34 Aligned_cols=240 Identities=10% Similarity=0.011 Sum_probs=153.9
Q ss_pred ceeEEEEeeCCCCEEE-EEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc
Q 013545 105 AISSAIWYPVDTGLFV-TGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA 181 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~-sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~ 181 (441)
...++++.+ ++.+++ +.+.++.|.+||..+.... .+... .....+++.++ ..++++.. ++.|.+||..+..
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~---g~l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGA---GTVYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTT---CCEEEEET-TTEEEEECTTCSC
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCC---CCEEEEcC-CCEEEEEeCCCce
Confidence 344566665 677777 5578899999997654432 12111 23444555553 23454444 8899999987765
Q ss_pred eeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCC
Q 013545 182 ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAP 261 (441)
Q Consensus 182 ~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (441)
...........+.++++.|++. ++++...++.|.+||..+......
T Consensus 99 ~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~--------------------------------- 144 (270)
T 1rwi_B 99 QTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVL--------------------------------- 144 (270)
T ss_dssp CEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEEC---------------------------------
T ss_pred EeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEee---------------------------------
Confidence 4322223346789999999886 677767788899997543210000
Q ss_pred CcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee
Q 013545 262 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV 341 (441)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~ 341 (441)
.......+.+|+++++|+.+++...++.|.+||.........
T Consensus 145 --------------------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~ 186 (270)
T 1rwi_B 145 --------------------------------------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL 186 (270)
T ss_dssp --------------------------------------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC
T ss_pred --------------------------------------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee
Confidence 000112356789999999888888889999999876542111
Q ss_pred eeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 342 NFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
. ......+..+++.+++.+.++.. ...+..|+............+...+.+++++|+|+.+++...++.|+++++
T Consensus 187 ~----~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 187 P----FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp C----CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred c----ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 0 01114466778888886655554 357999998665443333344467899999999998889889999999999
Q ss_pred CCCCCC
Q 013545 421 SRHISD 426 (441)
Q Consensus 421 ~~~~~~ 426 (441)
...++.
T Consensus 263 ~~~~~~ 268 (270)
T 1rwi_B 263 LEHHHH 268 (270)
T ss_dssp CGGGSC
T ss_pred CCcccc
Confidence 876653
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.42 E-value=2.7e-11 Score=114.19 Aligned_cols=213 Identities=11% Similarity=0.085 Sum_probs=130.9
Q ss_pred CCCEEEEE---------eCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC---C--cEEEEECCCC
Q 013545 115 DTGLFVTG---------SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---V--QVRLCDIASG 180 (441)
Q Consensus 115 ~~~~l~sg---------s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d---~--~I~vwdl~~~ 180 (441)
||.+++.. +.+..|.+||+.+++... + ..+....++|++. .|+..+.+ + .|.+||++++
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l---~~~~~~~~SpDg~---~la~~~~~~~~~~~~l~~~~~~~g 95 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I---ENATMPRISPDGK---KIAFMRANEEKKVSEIWVADLETL 95 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E---ESCEEEEECTTSS---EEEEEEEETTTTEEEEEEEETTTT
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c---ccCCCeEECCCCC---EEEEEEeccCCCcceEEEEECCCC
Confidence 56666543 236789999998877533 2 3466778888753 45444432 2 4888899988
Q ss_pred ceeeeecCCCCCeEEEEEecCCCcEEEEeecC---------------------------CcEEEEEcCCCceeeEeccCC
Q 013545 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCD---------------------------GAIRFWDIRRAGCFRVLDQSQ 233 (441)
Q Consensus 181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D---------------------------g~I~iWD~~~~~~~~~~~~~~ 233 (441)
+.......+ . +..+.|+|+++.++ .++.+ ..|.+||+.++.....
T Consensus 96 ~~~~l~~~~-~-~~~~~wspdg~~l~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~----- 167 (347)
T 2gop_A 96 SSKKILEAK-N-IRSLEWNEDSRKLL-IVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE----- 167 (347)
T ss_dssp EEEEEEEES-E-EEEEEECTTSSEEE-EEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE-----
T ss_pred ceEEEEcCC-C-ccceeECCCCCEEE-EEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee-----
Confidence 765544433 3 99999999998654 44432 2344444433211000
Q ss_pred ccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc
Q 013545 234 SQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT 313 (441)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 313 (441)
... . .+..++|+
T Consensus 168 ------------------------------------------------------------------l~~-~-~~~~~~~s 179 (347)
T 2gop_A 168 ------------------------------------------------------------------FEK-P-RFSSGIWH 179 (347)
T ss_dssp ------------------------------------------------------------------EEE-E-TTCEEEEE
T ss_pred ------------------------------------------------------------------ecC-C-CcccccCC
Confidence 111 2 46788999
Q ss_pred cCCCEEEEeecCC-------cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC---------CceEEEE
Q 013545 314 EDGMYLLSAGSDS-------RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM---------TAVKAFD 377 (441)
Q Consensus 314 ~dg~~l~sgs~D~-------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~wd 377 (441)
||| .+++++.+. ...||.+.+++. ..+.. . .... ..+|++..++..+. ..+.+||
T Consensus 180 pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~l~~---~--~~~~-~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 180 RDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--EKMFE---K--VSFY-AVDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp TTE-EEEEEECCCSSCCSSCCEEEEEEETTEE--EEEEE---E--ESEE-EEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred CCe-EEEEEecccccccccccccEEEeCCCce--EEecc---C--ccee-eECCCCCEEEEEEccccCCccccceEEEEC
Confidence 999 777776552 345554443331 11111 1 1122 23888887655432 2455666
Q ss_pred ccCCceEeeecccccceEE-EEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 378 IWSGKTCLTFRGHYEYVNC-CCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 378 ~~~~~~~~~l~gh~~~v~~-v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
+++....+.+|...+.. ++|+ |+ .+++++.|+.++|| +.++.
T Consensus 251 --~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 251 --GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp --SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS
T ss_pred --CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc
Confidence 66665666777888886 9999 88 88899999999999 87443
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.42 E-value=1.3e-10 Score=107.09 Aligned_cols=241 Identities=11% Similarity=0.021 Sum_probs=153.6
Q ss_pred eecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 38 ~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+..+.....+++|+|++..+++++..++.|.+||..++ . ..+ ..+...+.++++.+ ++.
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-----------~~~-------~~~~~~~~~l~~~~-dg~ 81 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-----------SPE-------MHPSHHQNGHCLNK-QGH 81 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-----------EEE-------ESSCSSEEEEEECT-TCC
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-----------EEE-------ECCCCCcceeeECC-CCc
Confidence 344556678899999753337889999999999998754 1 001 12344566777766 787
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEec-CC----eeEEEeeccCCCCccEEEE----Ee-------------CCCcEEEE
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKM-PG----KVYRTAMSPLAASHMLIAA----GT-------------EDVQVRLC 175 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~las----~s-------------~d~~I~vw 175 (441)
++++...++.|.+||..+++....... .+ .+..+.+.+++ .++++ |+ ..+.|..+
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G---~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~ 158 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG---SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL 158 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS---CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC---CEEEECCccccccccccccccccCCCcEEEEE
Confidence 888777789999999988875433221 11 22345565543 35554 32 12356666
Q ss_pred ECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC-CCce---eeEeccCCccccCCCCcccccccccC
Q 013545 176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR-RAGC---FRVLDQSQSQLGRRPPLLKRKSLSAG 251 (441)
Q Consensus 176 dl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (441)
+.. ++ ...+..+......++|+|+++.+ ++.+.++.|.+||+. .+.. ...+
T Consensus 159 ~~~-g~-~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~---------------------- 213 (296)
T 3e5z_A 159 APD-GT-LSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF---------------------- 213 (296)
T ss_dssp CTT-SC-EEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE----------------------
T ss_pred CCC-CC-EEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe----------------------
Confidence 655 44 34455667778999999999865 888888999999986 2221 0000
Q ss_pred ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe
Q 013545 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331 (441)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w 331 (441)
..+.+.+.+|+++++|+.+++. ++.|.+|
T Consensus 214 -------------------------------------------------~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 214 -------------------------------------------------TVEPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp -------------------------------------------------CCSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred -------------------------------------------------eCCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 0011234568999999977766 8899999
Q ss_pred eCCCCCceeeeeeeEEeccCcceEEEe-eCCCcEEEEeCCCceEEEEccCCce
Q 013545 332 DVESGRNTLVNFETVRLQTSKPIQLAT-TQDPAVVFVPCMTAVKAFDIWSGKT 383 (441)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~ 383 (441)
|.. ++. +........ +..+++ .+++..+++.+...+-.++..+.++
T Consensus 243 ~~~-g~~----~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 243 TPD-GDE----LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL 289 (296)
T ss_dssp CTT-SCE----EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred CCC-CCE----EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence 987 332 122233333 666777 4788878777666665666655543
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.41 E-value=1.5e-10 Score=108.61 Aligned_cols=254 Identities=10% Similarity=0.052 Sum_probs=163.3
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
.....+.+. +++..++...+++|.+||..+++... . +. .......+++++ ++.++++..
T Consensus 44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~---------~---i~------~~~~p~~i~~~~-~g~lyv~~~ 102 (328)
T 3dsm_A 44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVG---------R---IT------GFTSPRYIHFLS-DEKAYVTQI 102 (328)
T ss_dssp SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEE---------E---EE------CCSSEEEEEEEE-TTEEEEEEB
T ss_pred ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEE---------E---cC------CCCCCcEEEEeC-CCeEEEEEC
Confidence 346778775 46677788888999999998765311 0 00 112344566655 565555555
Q ss_pred CCCcEEEEECCCCeEEEEEecCC------eeEEEeeccCCCCccEEEEEe-CCCcEEEEECCCCceeeeecCCCCCeEEE
Q 013545 124 YDHYVKVWDTNCTRVVMNFKMPG------KVYRTAMSPLAASHMLIAAGT-EDVQVRLCDIASGAISQTLSGHRDGIMTV 196 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~las~s-~d~~I~vwdl~~~~~~~~l~~h~~~v~~v 196 (441)
.++.|.+||+.+++.+..+.... ....+.+ . +..++++.. .++.|.++|+++++.+..+... .....+
T Consensus 103 ~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~---~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i 177 (328)
T 3dsm_A 103 WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y---GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSL 177 (328)
T ss_dssp SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E---TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCC
T ss_pred CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E---CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccce
Confidence 89999999999999887777554 3344444 1 234455544 4889999999999888777642 335688
Q ss_pred EEecCCCcEEEEeecC----------CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545 197 EWSTSSEWILVTGGCD----------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA 266 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~D----------g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (441)
.++|+++ +++++..+ +.|.++|..+++....+..
T Consensus 178 ~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~----------------------------------- 221 (328)
T 3dsm_A 178 VMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF----------------------------------- 221 (328)
T ss_dssp EECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC-----------------------------------
T ss_pred EEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEec-----------------------------------
Confidence 9999987 56666544 7899999876543322110
Q ss_pred CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE
Q 013545 267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV 346 (441)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~ 346 (441)
........|+|+|++++|..+.. +|.+||+.+++.....+ .
T Consensus 222 -----------------------------------~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~--~ 262 (328)
T 3dsm_A 222 -----------------------------------KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF--L 262 (328)
T ss_dssp -----------------------------------CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS--B
T ss_pred -----------------------------------CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee--e
Confidence 00013678999999988876654 89999998876321111 0
Q ss_pred EeccCcceEEEeeCCCcEEEEeC------CCceEEEEccCCceEeeecccccceEEEEEc
Q 013545 347 RLQTSKPIQLATTQDPAVVFVPC------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS 400 (441)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs 400 (441)
......+..+++.|++..++++. ...+.+||.. ++.+.++..-.. -..++|-
T Consensus 263 ~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~-P~~~~~~ 320 (328)
T 3dsm_A 263 EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGII-PGAFCWK 320 (328)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEES-EEEEEEE
T ss_pred cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccC-cceEEEe
Confidence 11124566788888555555443 2578899987 888777754322 3555553
No 189
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.40 E-value=1.6e-09 Score=103.30 Aligned_cols=244 Identities=13% Similarity=0.066 Sum_probs=156.6
Q ss_pred EEEEeeCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEecC--------CeeEEEeeccCCCCccEEEEEe-C
Q 013545 108 SAIWYPVDTGLFVTGS----------YDHYVKVWDTNCTRVVMNFKMP--------GKVYRTAMSPLAASHMLIAAGT-E 168 (441)
Q Consensus 108 ~~~~~~~~~~~l~sgs----------~D~~i~iWd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~las~s-~ 168 (441)
.+.++| |+++++.+. .+++|.+||+.+.+.+..+... .....+.++|++. .|+++. .
T Consensus 70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~---~l~v~n~~ 145 (373)
T 2mad_H 70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA---DLLFFQFA 145 (373)
T ss_pred CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC---EEEEEecC
Confidence 456666 788777764 4788999999998888877654 1234567777643 444444 2
Q ss_pred -CCcEEEEECCCCceeee-ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCccccc
Q 013545 169 -DVQVRLCDIASGAISQT-LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK 246 (441)
Q Consensus 169 -d~~I~vwdl~~~~~~~~-l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (441)
++.|.++| ++++.+.. +.-. .++.+.|+++..+++.+.||++.++|. +++..........
T Consensus 146 ~~~~v~viD-~t~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~------------ 207 (373)
T 2mad_H 146 AGPAVGLVV-QGGSSDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAM------------ 207 (373)
T ss_pred CCCeEEEEE-CCCCEEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccc------------
Confidence 57899999 99998777 5422 235667777667788889999999998 6653321100000
Q ss_pred ccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccC-eEEEEEccCCCEEEEeecC
Q 013545 247 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSAGSD 325 (441)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sgs~D 325 (441)
. ....+ .....+.+++..++-.+..
T Consensus 208 -----------------------------------------------------~-~~~~p~~~~~~~~~~~~~~~~~~~~ 233 (373)
T 2mad_H 208 -----------------------------------------------------L-TAAQNLLTQPAQANKSGRIVWPVYS 233 (373)
T ss_pred -----------------------------------------------------c-cCCcceeecceeEecCCEEEEEcCC
Confidence 0 00000 1123455555443333467
Q ss_pred CcEEEeeCCCCCceee-eeee-------EEeccCcceEEEeeCCCcEEEEeCC-----------CceEEEEccCCceEee
Q 013545 326 SRIRLWDVESGRNTLV-NFET-------VRLQTSKPIQLATTQDPAVVFVPCM-----------TAVKAFDIWSGKTCLT 386 (441)
Q Consensus 326 ~~i~~wd~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~wd~~~~~~~~~ 386 (441)
+++.+.|+.+...... .+.. ..........+.+++++..+++... ..+-++|..+++...+
T Consensus 234 ~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~ 313 (373)
T 2mad_H 234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ 313 (373)
T ss_pred ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE
Confidence 7888888875432111 1100 0011122233677888888877542 3688999999999888
Q ss_pred ecccccceEEEEEcCCCC-eEEEee-cCCcEEEeCCCCCCCCCc
Q 013545 387 FRGHYEYVNCCCFSSQDQ-ELYTGG-NDRQILVWCPSRHISDGV 428 (441)
Q Consensus 387 l~gh~~~v~~v~fspd~~-~l~s~s-~D~~i~vW~~~~~~~~~~ 428 (441)
+..- ...++++|+|||+ .++++. .+++|.++|..+++....
T Consensus 314 i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 314 ISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 8533 3589999999999 778777 489999999999885544
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.39 E-value=7.4e-11 Score=110.60 Aligned_cols=234 Identities=12% Similarity=0.097 Sum_probs=150.9
Q ss_pred eEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545 107 SSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT 185 (441)
Q Consensus 107 ~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~ 185 (441)
.++.+.+ ++..+++.+.++.++.|. +.....+.. ......+.+.++ ..+++++..++.|.+||.++++....
T Consensus 9 ~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---g~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 9 PTLFYSG-KSNSAVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQ---GQLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp CBCCSCG-GGGCSSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTT---SCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred ceeeecC-CccceeEEeecccCcccc---cceeEEEeccCccccCcEECCC---CCEEEEECCCCEEEEEeCCCCcEEEE
Confidence 3444444 344555567788999992 344443332 233456666654 34677778889999999998886655
Q ss_pred ecCCCCCeEEEEEecCCCcEEEEeecC----CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCC
Q 013545 186 LSGHRDGIMTVEWSTSSEWILVTGGCD----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAP 261 (441)
Q Consensus 186 l~~h~~~v~~v~fsp~~~~~l~s~s~D----g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (441)
...+...+.+++++|+++ ++++...+ +.|.+||...+.....+..
T Consensus 82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~------------------------------ 130 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIED------------------------------ 130 (333)
T ss_dssp EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECS------------------------------
T ss_pred eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEcc------------------------------
Confidence 545678899999999987 56666555 6899998765422111100
Q ss_pred CcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec------CCcEEEeeCCC
Q 013545 262 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS------DSRIRLWDVES 335 (441)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~------D~~i~~wd~~~ 335 (441)
..+...+.+++++|+|..+++... .+.|..+|..+
T Consensus 131 ---------------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~ 171 (333)
T 2dg1_A 131 ---------------------------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF 171 (333)
T ss_dssp ---------------------------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred ---------------------------------------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence 001134788999999998887654 35566666655
Q ss_pred CCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC--CCceEEEEccC-CceEe--------eecccccceEEEEEcCCCC
Q 013545 336 GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWS-GKTCL--------TFRGHYEYVNCCCFSSQDQ 404 (441)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~-~~~~~--------~l~gh~~~v~~v~fspd~~ 404 (441)
++... + ......+..+++++++..+++.. ...+.+|++.+ +..+. .+.++ ..+..++++++|+
T Consensus 172 ~~~~~--~---~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~ 245 (333)
T 2dg1_A 172 RTVTP--I---IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN 245 (333)
T ss_dssp CCEEE--E---EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC
T ss_pred CEEEE--e---ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC
Confidence 43211 1 11123455678899988665543 35799999863 43332 22333 4678999999999
Q ss_pred eEEEeecCCcEEEeCCCCC
Q 013545 405 ELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 405 ~l~s~s~D~~i~vW~~~~~ 423 (441)
.+++...++.|.+|++...
T Consensus 246 l~v~~~~~~~v~~~d~~g~ 264 (333)
T 2dg1_A 246 LYVAMYGQGRVLVFNKRGY 264 (333)
T ss_dssp EEEEEETTTEEEEECTTSC
T ss_pred EEEEEcCCCEEEEECCCCC
Confidence 8888878899999998543
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.38 E-value=5.2e-11 Score=123.79 Aligned_cols=243 Identities=11% Similarity=0.135 Sum_probs=151.6
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCC-----cEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDS-----SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
+|...+..++||| ++++||.++.++ +|++||+.+++... .. . .+ ..+..+.|+| |
T Consensus 122 ~~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~----------~~-~------~~-~~~~~~~wsp-D 181 (710)
T 2xdw_A 122 DGTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELP----------DV-L------ER-VKFSCMAWTH-D 181 (710)
T ss_dssp TSCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEE----------EE-E------EE-ECSCCEEECT-T
T ss_pred CCCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCc----------cc-c------cC-cccceEEEEe-C
Confidence 4555788999997 577887666544 89999998765311 00 0 01 1244577876 8
Q ss_pred CCEEEEEeCCCc----------------EEEEECCCCeE--EEEEec---CCeeEEEeeccCCCCccEEEEEeC-----C
Q 013545 116 TGLFVTGSYDHY----------------VKVWDTNCTRV--VMNFKM---PGKVYRTAMSPLAASHMLIAAGTE-----D 169 (441)
Q Consensus 116 ~~~l~sgs~D~~----------------i~iWd~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~las~s~-----d 169 (441)
++.|+.++.|+. |.+|++.++.. ...+.. ........+++++. .|+.++. +
T Consensus 182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~---~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR---YVLLSIREGCDPV 258 (710)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC---EEEEEEECSSSSC
T ss_pred CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC---EEEEEEEccCCCc
Confidence 889998888876 99999988762 222232 22356777888653 3433332 5
Q ss_pred CcEEEEECCC------Cc-eeeeecCCCCCeEEEEEecCCCcEEEEeecC---CcEEEEEcCCCce--eeEeccCCcccc
Q 013545 170 VQVRLCDIAS------GA-ISQTLSGHRDGIMTVEWSTSSEWILVTGGCD---GAIRFWDIRRAGC--FRVLDQSQSQLG 237 (441)
Q Consensus 170 ~~I~vwdl~~------~~-~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D---g~I~iWD~~~~~~--~~~~~~~~~~~~ 237 (441)
..|++||+.+ +. ....+..+...+.. .|+|+++.+++.+..+ +.|.+||+.++.. ...
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~--------- 328 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV--------- 328 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---------
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee---------
Confidence 7899999987 53 35666677766655 4888888766555433 3688888764310 000
Q ss_pred CCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeec--cCeEEEEEccC
Q 013545 238 RRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY--GAVTGLKVTED 315 (441)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~s~d 315 (441)
+..|. ..+.+++|+++
T Consensus 329 --------------------------------------------------------------l~~~~~~~~~~~~~~~~~ 346 (710)
T 2xdw_A 329 --------------------------------------------------------------LVPEHEKDVLEWVACVRS 346 (710)
T ss_dssp --------------------------------------------------------------EECCCSSCEEEEEEEETT
T ss_pred --------------------------------------------------------------ccCCCCCCeEEEEEEEcC
Confidence 01111 24677889888
Q ss_pred CCEEEEeecCCc--EEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe-CC----CceEEEEccCCc
Q 013545 316 GMYLLSAGSDSR--IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CM----TAVKAFDIWSGK 382 (441)
Q Consensus 316 g~~l~sgs~D~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~wd~~~~~ 382 (441)
+.++++...|+. |++||+.+++.. ..+.........+++++++..++.. .. ..+..||+.+++
T Consensus 347 ~~lv~~~~~~g~~~l~~~~~~~g~~~----~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 347 NFLVLCYLHDVKNTLQLHDLATGALL----KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEE----EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCEEEEEEEECCCCCEE----EecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 888999999985 556677555421 1222222333445667777655433 22 368889998877
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.38 E-value=2.8e-10 Score=118.92 Aligned_cols=244 Identities=12% Similarity=0.028 Sum_probs=142.8
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCC-----CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC-----
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYD-----HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV----- 170 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~----- 170 (441)
+|...+....|+| |+++||.++.+ .+|++||+.+++.+...........+.|+++ . .|+.++.+.
T Consensus 160 ~~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~---~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 160 DGATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-D---ALLYSRFAEPKEGQ 234 (741)
T ss_dssp ---EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-S---EEEEEECCCC----
T ss_pred CCCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-C---EEEEEEecCccccc
Confidence 4555677788886 88888877654 4699999999987543211111234567765 2 444444443
Q ss_pred ---------cEEEEECCCCce----eeeecCCCCCeEEEEEecCCCcEEEEeec----CCcEEEEEcCCC--ceeeEecc
Q 013545 171 ---------QVRLCDIASGAI----SQTLSGHRDGIMTVEWSTSSEWILVTGGC----DGAIRFWDIRRA--GCFRVLDQ 231 (441)
Q Consensus 171 ---------~I~vwdl~~~~~----~~~l~~h~~~v~~v~fsp~~~~~l~s~s~----Dg~I~iWD~~~~--~~~~~~~~ 231 (441)
.|++|++.++.. +....+|...+..+.|+|+|+++++++.. ...|.+||+.++ .+...+
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-- 312 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL-- 312 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE--
T ss_pred ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe--
Confidence 399999988762 22233444568899999999976544432 347899988653 101111
Q ss_pred CCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEE
Q 013545 232 SQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK 311 (441)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 311 (441)
..+...+...
T Consensus 313 ---------------------------------------------------------------------~~~~~~~~~~- 322 (741)
T 1yr2_A 313 ---------------------------------------------------------------------IPDLKAQWDF- 322 (741)
T ss_dssp ---------------------------------------------------------------------ECSSSSCEEE-
T ss_pred ---------------------------------------------------------------------cCCCCceEEE-
Confidence 0011112222
Q ss_pred EccCCCEEEEeec----CCcEEEeeCCCCCceeeeeeeEEeccCcce-EEEeeCCCcEEEEeC-CCceEEEEcc-CCceE
Q 013545 312 VTEDGMYLLSAGS----DSRIRLWDVESGRNTLVNFETVRLQTSKPI-QLATTQDPAVVFVPC-MTAVKAFDIW-SGKTC 384 (441)
Q Consensus 312 ~s~dg~~l~sgs~----D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~wd~~-~~~~~ 384 (441)
++|+|..|+..+. ++.|.+||+.++... ...+.......+ .+.+. ++.++++.. ....++|.+. +++..
T Consensus 323 ~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 323 VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPR---FDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEECSSSSCE---EEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCccc---cEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 3488888777665 345999998874200 111111111122 23333 344444433 2344555443 56666
Q ss_pred eeecc-cccceEEEEEcCCCCeEE----EeecCCcEEEeCCCCCCC
Q 013545 385 LTFRG-HYEYVNCCCFSSQDQELY----TGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 385 ~~l~g-h~~~v~~v~fspd~~~l~----s~s~D~~i~vW~~~~~~~ 425 (441)
..+.. +.+.|..++++||++.|+ +....++|.+|++.++..
T Consensus 399 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 399 GAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66765 367799999999998766 334457899999987664
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.38 E-value=3.5e-10 Score=103.30 Aligned_cols=185 Identities=13% Similarity=0.126 Sum_probs=128.6
Q ss_pred CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcc-cceeEEEEeeCCCCEEEEEeCCCcEEEEEC
Q 013545 55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGLFVTGSYDHYVKVWDT 133 (441)
Q Consensus 55 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~ 133 (441)
.+++|++++.|+.|++||.++++.. .... .+. ..+.++.+.| ++++++ +.++.|..||.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~------------w~~~-----~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~ 63 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV------------WEYP-----LEKGWECNSVAATK-AGEILF--SYSKGAKMITR 63 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE------------EEEE-----CCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE------------EEeC-----CCccCCCcCeEECC-CCCEEE--eCCCCEEEECC
Confidence 3679999999999999998777531 1111 111 2355666666 788888 45889999999
Q ss_pred CCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeC-CCcEEEEECCCCceeeeec------CCCCCeEEEEEecCCCc
Q 013545 134 NCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTE-DVQVRLCDIASGAISQTLS------GHRDGIMTVEWSTSSEW 204 (441)
Q Consensus 134 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~-d~~I~vwdl~~~~~~~~l~------~h~~~v~~v~fsp~~~~ 204 (441)
+++.+..+..+ ..+....+.+++ .++++.+. ++.|..+|. +|+.+..+. ++......+++.+++.
T Consensus 64 -~G~~~W~~~~~~~~~~~~~~~~~dG---~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~- 137 (276)
T 3no2_A 64 -DGRELWNIAAPAGCEMQTARILPDG---NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN- 137 (276)
T ss_dssp -TSCEEEEEECCTTCEEEEEEECTTS---CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-
T ss_pred -CCCEEEEEcCCCCccccccEECCCC---CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-
Confidence 89988888764 245555555543 35666555 677877886 677665543 2223455677889987
Q ss_pred EEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCC
Q 013545 205 ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGS 284 (441)
Q Consensus 205 ~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (441)
++++...++.|..||.. ++.+-.+..
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~----------------------------------------------------- 163 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKL----------------------------------------------------- 163 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEEC-----------------------------------------------------
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEEC-----------------------------------------------------
Confidence 56888889999999986 654332210
Q ss_pred cccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCc
Q 013545 285 VRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN 338 (441)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~ 338 (441)
...+.++.+.++|..+++++.+++|..+|..+++.
T Consensus 164 -------------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 164 -------------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp -------------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred -------------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 01234567789999999999999999999998874
No 194
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.37 E-value=2.5e-10 Score=104.53 Aligned_cols=203 Identities=13% Similarity=0.183 Sum_probs=135.3
Q ss_pred CcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-------CeeEEEeeccCCCCccEEEEEeC-CCcE
Q 013545 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-------GKVYRTAMSPLAASHMLIAAGTE-DVQV 172 (441)
Q Consensus 101 ~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~las~s~-d~~I 172 (441)
+|-..+.++++.+ ++.++++...++.|++||.. +..+..+... .....+++.. .+..++++... ++.|
T Consensus 27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~--~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVR--NSGDIIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEET--TTTEEEEEECGGGCEE
T ss_pred CccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEc--CCCeEEEEcCCCCCEE
Confidence 4555677777775 67788888899999999987 5555555421 1344555522 12345555433 7899
Q ss_pred EEEECCCCceeeeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccC
Q 013545 173 RLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAG 251 (441)
Q Consensus 173 ~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (441)
.+|| .+++.+..+. .+...+.+++++|+++ ++++...++.|.+||.. ++.+..+..
T Consensus 103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~-------------------- 159 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGC-------------------- 159 (286)
T ss_dssp EEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEEC--------------------
T ss_pred EEEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCC--------------------
Confidence 9999 5677666664 3456789999999986 67777778999999954 222211100
Q ss_pred ccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEe
Q 013545 252 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 331 (441)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~w 331 (441)
..+...+.+|+++|+|+.+++.+.+++|++|
T Consensus 160 -------------------------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 190 (286)
T 1q7f_A 160 -------------------------------------------------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVF 190 (286)
T ss_dssp -------------------------------------------------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEE
T ss_pred -------------------------------------------------CCccCCcEEEEECCCCCEEEEECCCCEEEEE
Confidence 0112347889999999988888889999999
Q ss_pred eCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeec
Q 013545 332 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 411 (441)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~ 411 (441)
|..... . .... ..++...+..++++|+|+.+++...
T Consensus 191 ~~~g~~--~---~~~~---------------------------------------~~g~~~~p~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 191 NYEGQY--L---RQIG---------------------------------------GEGITNYPIGVGINSNGEILIADNH 226 (286)
T ss_dssp ETTCCE--E---EEES---------------------------------------CTTTSCSEEEEEECTTCCEEEEECS
T ss_pred cCCCCE--E---EEEc---------------------------------------cCCccCCCcEEEECCCCCEEEEeCC
Confidence 974311 0 0000 0122345788899999888888777
Q ss_pred CC-cEEEeCCCCC
Q 013545 412 DR-QILVWCPSRH 423 (441)
Q Consensus 412 D~-~i~vW~~~~~ 423 (441)
++ .|++|+....
T Consensus 227 ~~~~i~~~~~~g~ 239 (286)
T 1q7f_A 227 NNFNLTIFTQDGQ 239 (286)
T ss_dssp SSCEEEEECTTSC
T ss_pred CCEEEEEECCCCC
Confidence 75 8999986543
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.37 E-value=3e-11 Score=125.34 Aligned_cols=250 Identities=12% Similarity=0.087 Sum_probs=150.5
Q ss_pred CCCCceeEEEccCCCCcEEE-----EeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 41 PHKGSINSLQVDLTEERYLL-----SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~-----s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
+|...+.+++||| ++++|| +|+.+.+|++||+.+++.... . ...+.+ ...+.|+| |
T Consensus 118 ~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~--------------~~~~~~--~~~~~wsp-D 178 (695)
T 2bkl_A 118 DGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-D--------------VIEGGK--YATPKWTP-D 178 (695)
T ss_dssp SSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-C--------------CBSCCT--TCCCEECT-T
T ss_pred CCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCC-c--------------ccCccc--ccceEEec-C
Confidence 4666799999997 577887 666678999999987753200 0 000111 13467776 7
Q ss_pred CCEEEEEeCCCc-------------EEEEECCCCeE--EEEEec---CCeeEEEeeccCCCCccEEEEEeCCC----cEE
Q 013545 116 TGLFVTGSYDHY-------------VKVWDTNCTRV--VMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDV----QVR 173 (441)
Q Consensus 116 ~~~l~sgs~D~~-------------i~iWd~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~las~s~d~----~I~ 173 (441)
++.|+.++.|.. |++|++.++.. ...+.. ...+....+++++. .|+.++.++ .|.
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~---~l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK---YLFVYILRGWSENDVY 255 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC---CEEEEEEETTTEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC---EEEEEEeCCCCceEEE
Confidence 889999999877 99999988762 223332 23466777888653 344333333 677
Q ss_pred EEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEee---cCCcEEEEEcCCCce--eeEeccCCccccCCCCccccccc
Q 013545 174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG---CDGAIRFWDIRRAGC--FRVLDQSQSQLGRRPPLLKRKSL 248 (441)
Q Consensus 174 vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s---~Dg~I~iWD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 248 (441)
+||..+++. ..+..+...+....+ ++++ +++++. .++.|.+||+.++.. ...+
T Consensus 256 ~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l------------------- 313 (695)
T 2bkl_A 256 WKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEI------------------- 313 (695)
T ss_dssp EECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEE-------------------
T ss_pred EEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEE-------------------
Confidence 887766653 445556666666666 6666 666655 357899998765321 0000
Q ss_pred ccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceee-ccCeEEEEEccCCCEEEEeecCCc
Q 013545 249 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH-YGAVTGLKVTEDGMYLLSAGSDSR 327 (441)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~D~~ 327 (441)
...+ ...+.+++|+ ++..+++...|+.
T Consensus 314 ---------------------------------------------------~~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 314 ---------------------------------------------------VPEDSSASLLSVSIV-GGHLSLEYLKDAT 341 (695)
T ss_dssp ---------------------------------------------------ECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred ---------------------------------------------------ecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 0001 2236677887 7778899999999
Q ss_pred EEEeeCC-CCCceeeeeeeEEec-cCcceEEEeeCCCcEEEEeCC-----CceEEEEccCCceEeeecccc
Q 013545 328 IRLWDVE-SGRNTLVNFETVRLQ-TSKPIQLATTQDPAVVFVPCM-----TAVKAFDIWSGKTCLTFRGHY 391 (441)
Q Consensus 328 i~~wd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~wd~~~~~~~~~l~gh~ 391 (441)
.+||.+. .++. ...+.+. ......+++++++..++.... ..+.+||+.+++. ..+..+.
T Consensus 342 ~~l~~~~~~g~~----~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~-~~l~~~~ 407 (695)
T 2bkl_A 342 SEVRVATLKGKP----VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS-ELWAKVD 407 (695)
T ss_dssp EEEEEEETTCCE----EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE-EEEEECC
T ss_pred EEEEEEeCCCCe----eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEecCC
Confidence 8888654 2321 1111111 112223455677765553321 3688999988763 3444443
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.33 E-value=1.3e-09 Score=100.84 Aligned_cols=238 Identities=11% Similarity=0.154 Sum_probs=147.8
Q ss_pred eeEEEEeeCCCCEEEE-------EeCCCcEEEEECCCCeEEEEEe-----cCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545 106 ISSAIWYPVDTGLFVT-------GSYDHYVKVWDTNCTRVVMNFK-----MPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173 (441)
Q Consensus 106 V~~~~~~~~~~~~l~s-------gs~D~~i~iWd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~las~s~d~~I~ 173 (441)
..++++. +++.++++ +..++.|.+||..+++...... ....+..+.+.++. ..++++ .....|.
T Consensus 20 ~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--g~l~v~-~~~~~l~ 95 (314)
T 1pjx_A 20 AEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA--NQLFVA-DMRLGLL 95 (314)
T ss_dssp CEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS--SEEEEE-ETTTEEE
T ss_pred ccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCC--CcEEEE-ECCCCEE
Confidence 3456776 46777777 6778999999988877543221 11335556665531 234443 3345799
Q ss_pred EEECCCCceeee-ecC----CCCCeEEEEEecCCCcEEEEeecC---------------CcEEEEEcCCCceeeEeccCC
Q 013545 174 LCDIASGAISQT-LSG----HRDGIMTVEWSTSSEWILVTGGCD---------------GAIRFWDIRRAGCFRVLDQSQ 233 (441)
Q Consensus 174 vwdl~~~~~~~~-l~~----h~~~v~~v~fsp~~~~~l~s~s~D---------------g~I~iWD~~~~~~~~~~~~~~ 233 (441)
+||.+ ++.... ... +...+.++++.|++. ++++...+ +.|..||.. +....
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~------ 166 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ------ 166 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE------
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEE------
Confidence 99998 765433 221 123578999999986 55555443 233333322 11000
Q ss_pred ccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEc
Q 013545 234 SQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT 313 (441)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 313 (441)
...+......++++
T Consensus 167 ------------------------------------------------------------------~~~~~~~~~~i~~~ 180 (314)
T 1pjx_A 167 ------------------------------------------------------------------VDTAFQFPNGIAVR 180 (314)
T ss_dssp ------------------------------------------------------------------EEEEESSEEEEEEE
T ss_pred ------------------------------------------------------------------eccCCCCcceEEEe
Confidence 01122345788999
Q ss_pred ----cCCCEE-EEeecCCcEEEeeCC-CCCceee-eeeeEEecc-CcceEEEeeCCCcEEEEe-CCCceEEEEccCCceE
Q 013545 314 ----EDGMYL-LSAGSDSRIRLWDVE-SGRNTLV-NFETVRLQT-SKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTC 384 (441)
Q Consensus 314 ----~dg~~l-~sgs~D~~i~~wd~~-~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~ 384 (441)
|+++.| ++...+++|.+||+. +++.... .+....... ..+..+++.+++.+.++. ....+..||..+++..
T Consensus 181 ~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~ 260 (314)
T 1pjx_A 181 HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK 260 (314)
T ss_dssp ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS
T ss_pred cccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEe
Confidence 999654 555678999999986 3321110 111111111 345567788888776664 4468999999878877
Q ss_pred eeecccccceEEEEEcCCCCeE-EEeecCCcEEEeCCCC
Q 013545 385 LTFRGHYEYVNCCCFSSQDQEL-YTGGNDRQILVWCPSR 422 (441)
Q Consensus 385 ~~l~gh~~~v~~v~fspd~~~l-~s~s~D~~i~vW~~~~ 422 (441)
..+..+...+.+++|+|||++| ++...++.|..|++..
T Consensus 261 ~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 261 MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 7777777889999999999955 4555668899998864
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.30 E-value=1.7e-09 Score=102.31 Aligned_cols=268 Identities=14% Similarity=0.123 Sum_probs=167.5
Q ss_pred CCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe----------CCCcEEEEECC
Q 013545 65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS----------YDHYVKVWDTN 134 (441)
Q Consensus 65 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs----------~D~~i~iWd~~ 134 (441)
++.|.+.|..+.+... .+- . |.. + .+.++| |+.+++.+. .+++|.+||..
T Consensus 58 ~~~V~ViD~~t~~v~~---------~I~-v------G~~-P--~va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIG---------MID-G------GFL-P--NPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp SEEEEEEETTTTEEEE---------EEE-E------CSS-C--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCEEEEEECCCCeEEE---------EEE-C------CCC-C--cEEECC-CCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 7899999998765310 111 1 111 1 256666 777776554 46789999999
Q ss_pred CCeEEEEEecCC--------eeEEEeeccCCCCccEEEEEe-CCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcE
Q 013545 135 CTRVVMNFKMPG--------KVYRTAMSPLAASHMLIAAGT-EDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWI 205 (441)
Q Consensus 135 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~las~s-~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~ 205 (441)
+.+.+..+..+. ....+.+++++. .++++.. .++.|.++|+++++.+.++.-.. |....|.+...
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk--~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~~P~g~~~ 191 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHIFPTAPDT 191 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCC--EEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cceeecCCCce
Confidence 999988887543 234567777653 3333332 36899999999999888875321 22233555445
Q ss_pred EEEeecCCcEEEEEcCC-CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCC
Q 013545 206 LVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGS 284 (441)
Q Consensus 206 l~s~s~Dg~I~iWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (441)
+++.+.||++-+.++.. ++..... ...+
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~---~~~~------------------------------------------------ 220 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITH---TEVF------------------------------------------------ 220 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEE---CCCC------------------------------------------------
T ss_pred eEEECCCCCEEEEECCCCCeEEEee---ccee------------------------------------------------
Confidence 67888999999999875 3211000 0000
Q ss_pred cccccCCCcccccccceeeccCe-EEEEE-ccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEE----------eccCc
Q 013545 285 VRQRLHPGMLSSQDRATAHYGAV-TGLKV-TEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR----------LQTSK 352 (441)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~h~~~v-~~l~~-s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~----------~~~~~ 352 (441)
... ..++ ....| .++|+++. .+.+++|.+.|+.+...... .... .....
T Consensus 221 -----~~~-----------~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~--~~~~~~~~~~~~~g~~p~g 281 (386)
T 3sjl_D 221 -----HPE-----------DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFL--PAVEALTEAERADGWRPGG 281 (386)
T ss_dssp -----SCT-----------TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEEC--CCEESSCHHHHHTTEEECS
T ss_pred -----ccc-----------cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceee--cceeccccccccccccCCC
Confidence 000 0000 01244 36776544 44578999999976543211 1111 11223
Q ss_pred ceEEEeeCCCcEEEEeC-----------CCceEEEEccCCceEeeecccccceEEEEEcCCCC-eEEE-eecCCcEEEeC
Q 013545 353 PIQLATTQDPAVVFVPC-----------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYT-GGNDRQILVWC 419 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~~-----------~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~-~l~s-~s~D~~i~vW~ 419 (441)
...+++++++..+++.. ...+-++|..+++.+.++..- ..++.|+|+||++ +|++ ...+++|.++|
T Consensus 282 ~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 282 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 33466788888888763 146888999999998887643 3689999999997 6665 45589999999
Q ss_pred CCCCCCCCcc
Q 013545 420 PSRHISDGVD 429 (441)
Q Consensus 420 ~~~~~~~~~~ 429 (441)
..+++.....
T Consensus 361 ~~t~k~~~~i 370 (386)
T 3sjl_D 361 AESGEELRSV 370 (386)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCcEEEEe
Confidence 9998855433
No 198
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.30 E-value=5.6e-09 Score=96.32 Aligned_cols=224 Identities=13% Similarity=0.155 Sum_probs=143.5
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545 108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS 187 (441)
Q Consensus 108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~ 187 (441)
...|.+.++.++++...++.|..||..++.. ..+..+..+..+.+.+++. ++++ . +..|.+||.++++......
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~---l~v~-~-~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGG---YVAT-I-GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSS---EEEE-E-TTEEEEEETTTTEEEEEEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCC---EEEE-E-CCeEEEEECCCCcEEEEEe
Confidence 4566665566777888899999999988765 4456667777788777542 4443 3 5689999999887543222
Q ss_pred C----CCCCeEEEEEecCCCcEEEEeecC---------CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccC
Q 013545 188 G----HRDGIMTVEWSTSSEWILVTGGCD---------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNS 254 (441)
Q Consensus 188 ~----h~~~v~~v~fsp~~~~~l~s~s~D---------g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (441)
. ....+..++++|+++ ++++...+ ...++|.+.......
T Consensus 91 ~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~--------------------------- 142 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVK--------------------------- 142 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE---------------------------
T ss_pred cCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEE---------------------------
Confidence 1 123478899999987 45543222 223444432110000
Q ss_pred CcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeC
Q 013545 255 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDV 333 (441)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~ 333 (441)
....+....+.++|+||++.| ++.+.+++|.+||+
T Consensus 143 --------------------------------------------~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~ 178 (297)
T 3g4e_A 143 --------------------------------------------KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 178 (297)
T ss_dssp --------------------------------------------EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEE
T ss_pred --------------------------------------------EEeeccccccceEEcCCCCEEEEecCCCCcEEEEec
Confidence 001122346789999999865 66677899999987
Q ss_pred --CCCCcee-eeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEeeecccccceEEEEEc-CCCCeEEE
Q 013545 334 --ESGRNTL-VNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS-SQDQELYT 408 (441)
Q Consensus 334 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs-pd~~~l~s 408 (441)
.++.... ..+.........+..+++.+++.+.++.. ...+..||..+++.+..+..+...+++++|+ ||++.|+.
T Consensus 179 d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 179 DLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp CTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred cCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEE
Confidence 4443211 01111111123456678888887665543 3569999999999999998887889999999 88887653
Q ss_pred e
Q 013545 409 G 409 (441)
Q Consensus 409 ~ 409 (441)
+
T Consensus 259 t 259 (297)
T 3g4e_A 259 T 259 (297)
T ss_dssp E
T ss_pred E
Confidence 3
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.28 E-value=6.8e-09 Score=104.24 Aligned_cols=238 Identities=10% Similarity=-0.023 Sum_probs=163.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC--CCceeeeecCCCCCe
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA--SGAISQTLSGHRDGI 193 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~--~~~~~~~l~~h~~~v 193 (441)
+.++++...+++|.++|..+++.+..+........+.+++++. ++.+++.|+.|.+||+. +++.+..+.... ..
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr---~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P 242 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGR---YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA 242 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSC---EEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCC---EEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence 3466788889999999999999998888766667788888653 56677889999999996 787777776433 35
Q ss_pred EEEEEe----cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545 194 MTVEWS----TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN 269 (441)
Q Consensus 194 ~~v~fs----p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (441)
..++|+ |++++++++.-.+++|.++|..+.+.+..+......
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~---------------------------------- 288 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT---------------------------------- 288 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC----------------------------------
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc----------------------------------
Confidence 799999 699988888888899999998876655433210000
Q ss_pred CccccCcccccCCCCcccccCCCcccccccceeecc-CeEEEEEccCCCE-EEEeecCCcEEEeeCCCCCceeeeeeeEE
Q 013545 270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG-AVTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRNTLVNFETVR 347 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~~~~~~~~~~~~ 347 (441)
.. ....|.. .+..+.+++++.. +++...+++|.++|....+... ...+.
T Consensus 289 ---------------~~------------~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~ 339 (567)
T 1qks_A 289 ---------------YD------------EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEIS 339 (567)
T ss_dssp ---------------TT------------TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEE
T ss_pred ---------------cc------------cccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeee
Confidence 00 0001222 4677888888664 5556677999999988654211 11111
Q ss_pred eccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeecc-----cccceEEEEEcCCCCeEE-Eee-cCCcEEEe
Q 013545 348 LQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRG-----HYEYVNCCCFSSQDQELY-TGG-NDRQILVW 418 (441)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~g-----h~~~v~~v~fspd~~~l~-s~s-~D~~i~vW 418 (441)
....+....+++++.++++++. ..+.++|..+++....+.. |.+.--.+ ++|+++.+. |.. .+++|.++
T Consensus 340 -~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvi 417 (567)
T 1qks_A 340 -AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALI 417 (567)
T ss_dssp -CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEE
T ss_pred -ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEe
Confidence 1223345678899998887754 6799999999988766543 43322222 688866655 442 46899999
Q ss_pred CCCC
Q 013545 419 CPSR 422 (441)
Q Consensus 419 ~~~~ 422 (441)
+..+
T Consensus 418 d~~~ 421 (567)
T 1qks_A 418 GTDP 421 (567)
T ss_dssp ECCT
T ss_pred cCCC
Confidence 8876
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.27 E-value=3.6e-08 Score=90.22 Aligned_cols=276 Identities=8% Similarity=0.056 Sum_probs=175.4
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEE
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~ 120 (441)
.......+|++++ ++++.++...++.|.+||.. ++.. . +.. ..+...+..+.+.+ ++.+++
T Consensus 17 ~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~----------~-~~~-----~~~~~~~~~i~~~~-~g~l~v 77 (300)
T 2qc5_A 17 IPDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIK----------E-FEV-----PTPDAKVMCLIVSS-LGDIWF 77 (300)
T ss_dssp STTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE----------E-EEC-----SSTTCCEEEEEECT-TSCEEE
T ss_pred CCCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceE----------E-EEC-----CCCCCcceeEEECC-CCCEEE
Confidence 3456789999986 57777777788999999976 3210 0 000 11223456666664 677777
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecC---CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee-eecCCCCCeEEE
Q 013545 121 TGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTV 196 (441)
Q Consensus 121 sgs~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~-~l~~h~~~v~~v 196 (441)
+...++.|..+|.. ++. ..+..+ .....+.+.+. ..+.++...++.|..+|.+ ++... .+......+.++
T Consensus 78 ~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLN---GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECST---TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCe-EEecCCCCCCCCccceECCC---CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77678899999987 554 333332 33555555543 3355555557889999987 65442 234445678999
Q ss_pred EEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCc
Q 013545 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 276 (441)
Q Consensus 197 ~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (441)
++.++++ ++++...++.|..||. .+.... +..
T Consensus 152 ~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~--------------------------------------------- 183 (300)
T 2qc5_A 152 TLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPL--------------------------------------------- 183 (300)
T ss_dssp EECTTSS-EEEEETTTTEEEEECT-TCCEEE-EEC---------------------------------------------
T ss_pred EECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeC---------------------------------------------
Confidence 9999987 6666666788999986 332111 000
Q ss_pred ccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545 277 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL 356 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (441)
..+...+.+++++++|...++....+.|.+||. +++... +. .......+..+
T Consensus 184 ------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~-~~~~~~~~~~i 235 (300)
T 2qc5_A 184 ------------------------PTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE--YD-IPTPNARPHAI 235 (300)
T ss_dssp ------------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EE-CSSTTCCEEEE
T ss_pred ------------------------CCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE--EE-CCCCCCCceEE
Confidence 001124678999999988887777788999998 433211 11 11122445677
Q ss_pred EeeCCCcEEEEeCC-CceEEEEccCCceEe-eecccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 357 ATTQDPAVVFVPCM-TAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 357 ~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~-~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
++.+++.+.++... ..+..++. +++... .+......+.+++++++|+.+++.. . .|..+++
T Consensus 236 ~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 236 TAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred EECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 88888876555533 67888888 454332 2344456689999999998777665 4 6666665
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.27 E-value=2.1e-08 Score=91.74 Aligned_cols=234 Identities=12% Similarity=0.057 Sum_probs=153.5
Q ss_pred cceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec---CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545 104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180 (441)
Q Consensus 104 ~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~ 180 (441)
..+.++.+.+ ++.++++...++.|.+||.. +... .+.. ...+..+.+.+. ..+.++...++.|..||.+ +
T Consensus 15 ~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 15 TGPYGITVSD-KGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSD---GEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECTT-S
T ss_pred CCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCC---CCEEEeCCCCCeEEEECCC-C
Confidence 3456666665 67777776668899999988 5543 3332 234556666553 2355555557889999986 4
Q ss_pred cee-eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545 181 AIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259 (441)
Q Consensus 181 ~~~-~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (441)
+.. ..+..+...+.++++.|++. ++++...++.|..||. ++...... .
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~-~---------------------------- 136 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYE-L---------------------------- 136 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEE-C----------------------------
T ss_pred cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEec-C----------------------------
Confidence 332 22233456789999999886 5666666788999987 33211000 0
Q ss_pred CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce
Q 013545 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT 339 (441)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~ 339 (441)
..+...+.+++++++|..+++...++.|..||. +++..
T Consensus 137 -----------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 174 (299)
T 2z2n_A 137 -----------------------------------------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT 174 (299)
T ss_dssp -----------------------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred -----------------------------------------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence 001124678999999988888777889999998 55422
Q ss_pred eeeeeeEEeccCcceEEEeeCCCcEEEEeC-CCceEEEEccCCceEe-eecccccceEEEEEcCCCCeEEEeecCCcEEE
Q 013545 340 LVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILV 417 (441)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~wd~~~~~~~~-~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~v 417 (441)
. + ........+..+++.+++.+.+... ...+..|+. +++... .+..+...+.+++++++|+.+++...++.|.+
T Consensus 175 ~--~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 250 (299)
T 2z2n_A 175 E--F-KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGR 250 (299)
T ss_dssp E--E-ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred E--e-eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEE
Confidence 1 1 0111123455677888887665553 467899998 666433 23445677999999999987777667888999
Q ss_pred eCCC
Q 013545 418 WCPS 421 (441)
Q Consensus 418 W~~~ 421 (441)
|++.
T Consensus 251 ~d~~ 254 (299)
T 2z2n_A 251 LTSN 254 (299)
T ss_dssp EETT
T ss_pred ECCC
Confidence 9984
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.25 E-value=1.8e-09 Score=103.98 Aligned_cols=266 Identities=12% Similarity=0.069 Sum_probs=170.2
Q ss_pred CcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe----------CCCcEEEEECCC
Q 013545 66 SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS----------YDHYVKVWDTNC 135 (441)
Q Consensus 66 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs----------~D~~i~iWd~~~ 135 (441)
++|.+.|..+.+... .+- + |. .+ .+.++| |+++++.+. .++.|.++|..+
T Consensus 99 ~~VsVID~~t~~vv~---------~I~-v------G~-~P--gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 99 TQQFVIDGSTGRILG---------MTD-G------GF-LP--HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp EEEEEEETTTTEEEE---------EEE-E------CS-SC--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CeEEEEECCCCEEEE---------EEE-C------CC-CC--ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 799999998765321 111 1 11 11 456666 677666554 477999999999
Q ss_pred CeEEEEEecC--------CeeEEEeeccCCCCccEEEEEe--CCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcE
Q 013545 136 TRVVMNFKMP--------GKVYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWI 205 (441)
Q Consensus 136 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~las~s--~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~ 205 (441)
.+.+..+..+ .....+.+++++. .+.++. .++.|.+.|+++++.+.++.--. +....|+++..
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk---~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~ 231 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNK---NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTV 231 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSS---EEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCC---EEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcE
Confidence 9998888764 1233456676543 444443 36789999999999887776321 13455665556
Q ss_pred EEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCc
Q 013545 206 LVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV 285 (441)
Q Consensus 206 l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (441)
+++.+.||++-+.|+..++...... ..+ ..
T Consensus 232 ~v~~~~dG~~~~V~~~~~~v~~~~~---~~~-----------------------------------------------~v 261 (426)
T 3c75_H 232 FYMNCRDGSLARVDFADGETKVTNT---EVF-----------------------------------------------HT 261 (426)
T ss_dssp EEEEETTSSEEEEECCTTCCEEEEC---CCC-----------------------------------------------SC
T ss_pred EEEEcCCCCEEEEECCCCcEEEEee---eee-----------------------------------------------cc
Confidence 7788889998888874432211000 000 00
Q ss_pred ccccCCCcccccccceeeccC-eEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEe----------ccCcce
Q 013545 286 RQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL----------QTSKPI 354 (441)
Q Consensus 286 ~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~----------~~~~~~ 354 (441)
. ..+ ...+.|++++..++..+..++|.+.|+........ ..... ......
T Consensus 262 ~-----------------~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~--~~~~~~~~~~i~~g~~p~g~~ 322 (426)
T 3c75_H 262 E-----------------DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFR--APIEALTEAERADDWRPGGWQ 322 (426)
T ss_dssp T-----------------TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEEC--CCEESSCTTTGGGTEEECSSS
T ss_pred C-----------------CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEe--eeeeeccccccccccccCCce
Confidence 0 000 11245788888766667788999999875432111 11110 011112
Q ss_pred EEEeeCCCcEEEEeC-----------CCceEEEEccCCceEeeecccccceEEEEEcCCCC-eEEEee-cCCcEEEeCCC
Q 013545 355 QLATTQDPAVVFVPC-----------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGG-NDRQILVWCPS 421 (441)
Q Consensus 355 ~~~~~~~~~~~~~~~-----------~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~-~l~s~s-~D~~i~vW~~~ 421 (441)
.+++++++..+++.. ...+-++|..+++.+.++..-. ..+.++|+|||+ +|+++. .+++|.|+|..
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 357788888777753 2469999999999998886433 489999999999 888777 58999999999
Q ss_pred CCCCCCc
Q 013545 422 RHISDGV 428 (441)
Q Consensus 422 ~~~~~~~ 428 (441)
+++....
T Consensus 402 t~kvv~t 408 (426)
T 3c75_H 402 TGEELRS 408 (426)
T ss_dssp TCCEEEE
T ss_pred CCCEEEE
Confidence 9986544
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.21 E-value=1.1e-08 Score=98.89 Aligned_cols=244 Identities=12% Similarity=0.091 Sum_probs=154.7
Q ss_pred ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC--cEEEEECCCCce
Q 013545 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCDIASGAI 182 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~--~I~vwdl~~~~~ 182 (441)
....+++.+ ++.++++...++.|++||+.++............. +++.+.. ..|+++..++ .|.+++..++..
T Consensus 132 ~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g---~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 132 YMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDK---QRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTS---SEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCC---CcEEEEecCCCceEEEEEcCCCce
Confidence 455677765 67777887788999999999887765544333333 6666643 2455555544 799999877654
Q ss_pred eeee----cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545 183 SQTL----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP 258 (441)
Q Consensus 183 ~~~l----~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (441)
...+ ..+...+.+++++|++..+++ +..++.|..||...+.. ..+....
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~-~~~~~~~------------------------- 259 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEV-TLIKQLE------------------------- 259 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCE-EEEEECC-------------------------
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCE-EEEeccc-------------------------
Confidence 4344 324566789999995555555 56688999999875431 1110000
Q ss_pred CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEcc-CCCEEEEeecCCcEEEeeCCCCC
Q 013545 259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~~ 337 (441)
..+ .....+...|+|+| ++.++++...+++|+.|+.....
T Consensus 260 ----------------------~~g-----------------~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~ 300 (409)
T 3hrp_A 260 ----------------------LSG-----------------SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC 300 (409)
T ss_dssp ----------------------CCS-----------------CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE
T ss_pred ----------------------ccC-----------------CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE
Confidence 000 00001123799999 47777788888999999976431
Q ss_pred ceeeeee------eEE---eccCcceEEEeeCCCcEEEEeC-C-CceEEEEccCCceEeeeccc---------------c
Q 013545 338 NTLVNFE------TVR---LQTSKPIQLATTQDPAVVFVPC-M-TAVKAFDIWSGKTCLTFRGH---------------Y 391 (441)
Q Consensus 338 ~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~wd~~~~~~~~~l~gh---------------~ 391 (441)
....... .-. .....|..+++.+++.+.++.. . ..++.|++.++. +.++.++ .
T Consensus 301 ~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~ 379 (409)
T 3hrp_A 301 EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATF 379 (409)
T ss_dssp EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCB
T ss_pred EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEe
Confidence 1110000 000 0023467788999998666654 3 578999977775 4555555 3
Q ss_pred cceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 392 EYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 392 ~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
.....|+++|+|..+++-..++.|+.+++
T Consensus 380 ~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 380 NYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp SSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 46899999999888888888888887764
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.21 E-value=4.8e-10 Score=106.53 Aligned_cols=143 Identities=15% Similarity=0.108 Sum_probs=106.3
Q ss_pred ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEE
Q 013545 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-----------VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVR 173 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~ 173 (441)
.++.+++++ ...++++|+.| .+++|++++.. ......+++ +..++| + ..+|+++ .++.|+
T Consensus 39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d---~~~L~v~-~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--H---GDQVLVS-TRNALY 109 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--E---TTEEEEE-ESSEEE
T ss_pred cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--C---CCEEEEE-cCCcEE
Confidence 466677776 56689999998 56669854322 223456677 888888 2 3467777 789999
Q ss_pred EEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545 174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN 253 (441)
Q Consensus 174 vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (441)
+||+.+......+..|...+.++.+.+.. ++.++.||+|.+||+..+...
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~--------------------------- 159 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTK--------------------------- 159 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEE---------------------------
T ss_pred EEEchhhhccCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCccc---------------------------
Confidence 99998877666677788888888887653 677899999999999754211
Q ss_pred CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeC
Q 013545 254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 333 (441)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~ 333 (441)
.+...|++++|||+| ++.|..||++++|+.
T Consensus 160 ------------------------------------------------~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 160 ------------------------------------------------QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAW 189 (388)
T ss_dssp ------------------------------------------------EEEESEEEEEECSSE--EEEEETTSCEEEEEE
T ss_pred ------------------------------------------------cccCCceEEEEcCCc--eEEEEcCCcEEEEcC
Confidence 122459999999999 677999999999987
Q ss_pred CCC
Q 013545 334 ESG 336 (441)
Q Consensus 334 ~~~ 336 (441)
...
T Consensus 190 ~~~ 192 (388)
T 1xip_A 190 RNG 192 (388)
T ss_dssp ETT
T ss_pred CCc
Confidence 654
No 205
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.20 E-value=2.6e-09 Score=100.80 Aligned_cols=274 Identities=10% Similarity=0.054 Sum_probs=161.1
Q ss_pred CceeEEEccCCCCcEEEEee--CCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEE
Q 013545 44 GSINSLQVDLTEERYLLSGA--SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT 121 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 121 (441)
.....+++++ +++++++.. .++.++||.+.++... .. .. ......+|-..+..+.+.+ ++.++++
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~~------~~-p~----~~~~~~~~~~~p~gv~~d~-~g~L~v~ 83 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGLI------PF-PP----QSGNAIITFDTVLGIKSDG-NGIVWML 83 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEEE------ES-CC----CCSSCCCCCSCEEEEEECS-SSEEEEE
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCee------cC-CC----cccCcccceeEeeEEEEcC-CCcEEEE
Confidence 6788999986 578888864 2344677766432210 00 00 0011224556777888876 4555554
Q ss_pred EeC-----CCcEEEEECCCCeEEEEEecCC-------eeEEEeeccCCCCccEEEEEe---CCCcEEEEECCCCceeeee
Q 013545 122 GSY-----DHYVKVWDTNCTRVVMNFKMPG-------KVYRTAMSPLAASHMLIAAGT---EDVQVRLCDIASGAISQTL 186 (441)
Q Consensus 122 gs~-----D~~i~iWd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~las~s---~d~~I~vwdl~~~~~~~~l 186 (441)
-.. +..|.+||+.+++.+..+..+. ....+.+.+. ...+.++.. .++.|.+||+++++..+.+
T Consensus 84 D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~--~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 84 DNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI--HNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp ECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT--TTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred cCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecC--CCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 333 5789999999999877776532 2355666543 223445544 5789999999999877777
Q ss_pred cCCCCCeE-EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCccc
Q 013545 187 SGHRDGIM-TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRS 265 (441)
Q Consensus 187 ~~h~~~v~-~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (441)
.+|..... ...|.+++. .+.+.+.|++++.|..
T Consensus 162 ~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~~~~~~--------------------------------------------- 195 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGV-PVQIGQPDGTVIRPHL--------------------------------------------- 195 (343)
T ss_dssp TTCTTTSCCSCCCEETTE-ECBEECTTSCEECCCC---------------------------------------------
T ss_pred cCCCcccccccceeECCE-EEEeccCCCceeceec---------------------------------------------
Confidence 66543211 133444543 3444555555544421
Q ss_pred CCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCC-cEEEeeCCC---CCc---
Q 013545 266 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS-RIRLWDVES---GRN--- 338 (441)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-~i~~wd~~~---~~~--- 338 (441)
.+..|+|+|||++|..+..++ ++..++... +..
T Consensus 196 ----------------------------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~ 235 (343)
T 2qe8_A 196 ----------------------------------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDA 235 (343)
T ss_dssp ----------------------------------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHH
T ss_pred ----------------------------------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChh
Confidence 146799999999887776665 444444221 100
Q ss_pred e-eeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecc-cccceEEEEEcCCCCeEEEeecCCcE
Q 013545 339 T-LVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQI 415 (441)
Q Consensus 339 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~g-h~~~v~~v~fspd~~~l~s~s~D~~i 415 (441)
. ...+.. ......+.-+++.+++.+.++... ..+.+||..+++....... +.....+|+|.++++++++.+..+.+
T Consensus 236 ~~~~~~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 236 ELGSKIER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp HHHTTCEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred hhhcceEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 0 000011 011234455778888876666533 6799999866664333322 24568999999999888887755544
Q ss_pred EEeC
Q 013545 416 LVWC 419 (441)
Q Consensus 416 ~vW~ 419 (441)
.+|.
T Consensus 315 ~~f~ 318 (343)
T 2qe8_A 315 APLN 318 (343)
T ss_dssp GGGB
T ss_pred cccc
Confidence 4443
No 206
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.19 E-value=6.3e-09 Score=94.08 Aligned_cols=237 Identities=13% Similarity=0.047 Sum_probs=147.4
Q ss_pred ceeEEEccCCCCcEEE-EeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 45 SINSLQVDLTEERYLL-SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
...+|++++ ++++++ +.+.++.|.+||..+.... .. ...+...+.++++.+ ++.++++..
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~-------------~~----~~~~~~~p~~i~~~~-~g~l~v~~~ 85 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTT-------------VL----PFNGLYQPQGLAVDG-AGTVYVTDF 85 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----E-------------EC----CCCSCCSCCCEEECT-TCCEEEEET
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccc-------------eE----eeCCcCCcceeEECC-CCCEEEEcC
Confidence 678899986 567777 6578899999987543210 00 011222345566765 566666665
Q ss_pred CCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545 124 YDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS 201 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~ 201 (441)
++.|.+||....... .+... .....+.+.+.+ .++++...++.|.+|+..+.........+...+.+++++|+
T Consensus 86 -~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g---~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~ 160 (270)
T 1rwi_B 86 -NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQG---AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS 160 (270)
T ss_dssp -TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTC---CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTT
T ss_pred -CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCC---CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCC
Confidence 889999998765432 23222 345566666643 35666666788999987665443333334456789999999
Q ss_pred CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
++ ++++...++.|.+||.........
T Consensus 161 g~-l~v~~~~~~~i~~~~~~~~~~~~~----------------------------------------------------- 186 (270)
T 1rwi_B 161 GN-VYVTDTDNNRVVKLEAESNNQVVL----------------------------------------------------- 186 (270)
T ss_dssp CC-EEEEEGGGTEEEEECTTTCCEEEC-----------------------------------------------------
T ss_pred CC-EEEEECCCCEEEEEecCCCceEee-----------------------------------------------------
Confidence 87 677777778999999764311000
Q ss_pred CCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC
Q 013545 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD 361 (441)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (441)
...+...+.+|+++++|..+++...+++|.+||......... . ......+..+++.++
T Consensus 187 ------------------~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~--~--~~~~~~p~~i~~~~~ 244 (270)
T 1rwi_B 187 ------------------PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL--P--FTGLNTPLAVAVDSD 244 (270)
T ss_dssp ------------------CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC--C--CCSCSCEEEEEECTT
T ss_pred ------------------cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee--c--cCCCCCceeEEECCC
Confidence 000113467899999998888888899999999876432110 0 011234667888888
Q ss_pred CcEEEEeCC-CceEEEEccCC
Q 013545 362 PAVVFVPCM-TAVKAFDIWSG 381 (441)
Q Consensus 362 ~~~~~~~~~-~~~~~wd~~~~ 381 (441)
+.+.++... ..++++++...
T Consensus 245 g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 245 RTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CCEEEEEGGGTEEEEECCCGG
T ss_pred CCEEEEECCCCEEEEEcCCCc
Confidence 875555433 57888876543
No 207
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.15 E-value=1e-08 Score=106.17 Aligned_cols=244 Identities=12% Similarity=0.115 Sum_probs=146.3
Q ss_pred cCcccceeEEEEeeCCCCEEE-----EEeCCCcEEEEECCCCeEEEEEecCCe-eEEEeeccCCCCccEEEEEeCC----
Q 013545 100 HGHKYAISSAIWYPVDTGLFV-----TGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTED---- 169 (441)
Q Consensus 100 ~~h~~~V~~~~~~~~~~~~l~-----sgs~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~las~s~d---- 169 (441)
.+|...+..+.++| |+++|| +|+++.+|++||+.+++.+.. ...+. ...+.|+ ++. .|+.++.+
T Consensus 125 ~~~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~---~l~y~~~~~~~~ 198 (693)
T 3iuj_A 125 PDGTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNE---GFFYSSYDKPDG 198 (693)
T ss_dssp TTSCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTT---EEEEEESSCCC-
T ss_pred CCCcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCC---EEEEEEecCccc
Confidence 35666777777776 888887 344457899999999986543 12111 2344566 442 34445544
Q ss_pred ---------CcEEEEECCCCce----eeeecC-CCCCeEEEEEecCCCcEEEEeecC---CcEEEEEcCCCc-eeeEecc
Q 013545 170 ---------VQVRLCDIASGAI----SQTLSG-HRDGIMTVEWSTSSEWILVTGGCD---GAIRFWDIRRAG-CFRVLDQ 231 (441)
Q Consensus 170 ---------~~I~vwdl~~~~~----~~~l~~-h~~~v~~v~fsp~~~~~l~s~s~D---g~I~iWD~~~~~-~~~~~~~ 231 (441)
..|++|++.++.. +..... |...+.++.|+|++++++++.+.+ +.|.++|+.++. .+..+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l-- 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV-- 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE--
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE--
Confidence 3499999988753 333344 556678999999999877766533 578888886531 11111
Q ss_pred CCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEE
Q 013545 232 SQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK 311 (441)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 311 (441)
..+.......
T Consensus 277 ---------------------------------------------------------------------~~~~~~~~~~- 286 (693)
T 3iuj_A 277 ---------------------------------------------------------------------QGDLDADVSL- 286 (693)
T ss_dssp ---------------------------------------------------------------------ECSSSSCEEE-
T ss_pred ---------------------------------------------------------------------eCCCCceEEE-
Confidence 0111222222
Q ss_pred EccCCCEE-EEeecC---CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC----CceEEEEccCCce
Q 013545 312 VTEDGMYL-LSAGSD---SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKT 383 (441)
Q Consensus 312 ~s~dg~~l-~sgs~D---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~wd~~~~~~ 383 (441)
++++|..| +....| ++|..+|+.++.... ...+..+..... .+++++..++.... ..+++|++..+ .
T Consensus 287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~ 361 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH--WRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-R 361 (693)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG--CEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-E
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc--cEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-e
Confidence 55555544 344333 679999998764310 011111222222 67777776665432 25788888644 3
Q ss_pred Eeeec-ccccceEEEEEcCCCCeEEEeecC----CcEEEeCCCCCCCC
Q 013545 384 CLTFR-GHYEYVNCCCFSSQDQELYTGGND----RQILVWCPSRHISD 426 (441)
Q Consensus 384 ~~~l~-gh~~~v~~v~fspd~~~l~s~s~D----~~i~vW~~~~~~~~ 426 (441)
...+. .+.+.+..+.++||++.|+-...+ ++|..|++.++...
T Consensus 362 ~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 362 VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 44443 345668888899998887754444 78999999877543
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.14 E-value=6.9e-08 Score=90.22 Aligned_cols=222 Identities=12% Similarity=0.064 Sum_probs=137.2
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545 108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS 187 (441)
Q Consensus 108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~ 187 (441)
...|.+.++.++++...++.|..||..+++.. .+..+..+..+.+.+++ .++++ .. ..|.+||.++++......
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg---~l~v~-~~-~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDS---KQLIA-SD-DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETT---EEEEE-ET-TEEEEEETTTCCEEEEEC
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCC---eEEEE-EC-CCEEEEECCCCcEEEEee
Confidence 34566644556777778899999999887643 44556667777777653 34443 33 349999998887543221
Q ss_pred ---CC-CCCeEEEEEecCCCcEEEEeecC----CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545 188 ---GH-RDGIMTVEWSTSSEWILVTGGCD----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259 (441)
Q Consensus 188 ---~h-~~~v~~v~fsp~~~~~l~s~s~D----g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (441)
+. ...+..+.++|+++ ++++...+ +...||.+..++ +..+
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~~g~-~~~~------------------------------ 174 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGK-VTKL------------------------------ 174 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTE-EEEE------------------------------
T ss_pred CCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEeCCc-EEEe------------------------------
Confidence 11 23578999999987 45544321 234444432221 1100
Q ss_pred CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCC--CC
Q 013545 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVE--SG 336 (441)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~--~~ 336 (441)
..+......++|+|||+.| ++.+.+++|.+||+. ++
T Consensus 175 -----------------------------------------~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G 213 (326)
T 2ghs_A 175 -----------------------------------------FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG 213 (326)
T ss_dssp -----------------------------------------EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred -----------------------------------------eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC
Confidence 0112235689999999865 455667899999986 44
Q ss_pred -Ccee-eeeeeEEeccCcceEEEeeCCCcEEEEe-CCCceEEEEccCCceEeeecccccceEEEEEc-CCCCeEEEe
Q 013545 337 -RNTL-VNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS-SQDQELYTG 409 (441)
Q Consensus 337 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs-pd~~~l~s~ 409 (441)
.... ..+.........+..+++.+++.+.+.. ....+..|+. +++.+..+..+...+.+++|+ ||++.|+.+
T Consensus 214 l~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 214 LPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp CBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred CcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence 3110 1111110012334556777888766554 3467999998 678888888777789999999 898776543
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.14 E-value=1.5e-09 Score=103.04 Aligned_cols=154 Identities=8% Similarity=0.051 Sum_probs=102.8
Q ss_pred ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC
Q 013545 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~ 124 (441)
.++.|++++. ..++++|+.| .+++|+++........... ....... ..+.. |..+.| |+.+|+.+ .
T Consensus 39 ~~nlLais~~-~gll~a~~~~-~l~v~~~~~l~~~~~~~~~-~~~~~~~------~~lp~-V~~l~f---d~~~L~v~-~ 104 (388)
T 1xip_A 39 SLQNLDISNS-KSLFVAASGS-KAVVGELQLLRDHITSDST-PLTFKWE------KEIPD-VIFVCF---HGDQVLVS-T 104 (388)
T ss_dssp CCBCEEEETT-TTEEEEEETT-EEEEEEHHHHHHHHHSSSC-CCCCSEE------EECTT-EEEEEE---ETTEEEEE-E
T ss_pred cccEEEEcCC-CCEEEEeCCC-EEEEEEhhHhhhhhccccc-cccceEE------eeCCC-eeEEEE---CCCEEEEE-c
Confidence 6999999964 5688899887 5566997643310000000 0001011 13445 888888 67888888 8
Q ss_pred CCcEEEEECCCCeEEEEE-ecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCC
Q 013545 125 DHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE 203 (441)
Q Consensus 125 D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~ 203 (441)
++.|++||+.+....... .+...+..+.+. .+ -+++++.||.+.+||++++.... +...|+|++|+|+|
T Consensus 105 ~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~--~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG- 174 (388)
T 1xip_A 105 RNALYSLDLEELSEFRTVTSFEKPVFQLKNV--NN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ- 174 (388)
T ss_dssp SSEEEEEESSSTTCEEEEEECSSCEEEEEEC--SS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-
T ss_pred CCcEEEEEchhhhccCccceeecceeeEEec--CC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-
Confidence 899999998765432222 233445443332 22 27888999999999999887643 45689999999998
Q ss_pred cEEEEeecCCcEEEEEcCCCc
Q 013545 204 WILVTGGCDGAIRFWDIRRAG 224 (441)
Q Consensus 204 ~~l~s~s~Dg~I~iWD~~~~~ 224 (441)
++.|..||+|++|+.....
T Consensus 175 --~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 175 --LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp --EEEEETTSCEEEEEEETTE
T ss_pred --eEEEEcCCcEEEEcCCCcc
Confidence 4678899999999876543
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.11 E-value=5.8e-08 Score=89.75 Aligned_cols=225 Identities=14% Similarity=0.143 Sum_probs=134.3
Q ss_pred EEEEeeCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee
Q 013545 108 SAIWYPVDTG-LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL 186 (441)
Q Consensus 108 ~~~~~~~~~~-~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l 186 (441)
..+|.+ +++ ++++...++.|..|+. ++.........+.+..+.+.+++ .++++...++.|.+|+.+ ++.....
T Consensus 49 gp~~~~-~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG---~l~v~~~~~~~v~~~~~~-g~~~~~~ 122 (305)
T 3dr2_A 49 GPAWWE-AQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQ---RLVHCEHGRRAITRSDAD-GQAHLLV 122 (305)
T ss_dssp EEEEEG-GGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTS---CEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred CCeEeC-CCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCC---CEEEEECCCCEEEEECCC-CCEEEEE
Confidence 456766 555 6778888899999998 45432222233445666666643 355554555789999986 5532221
Q ss_pred ---cCC-CCCeEEEEEecCCCcEEEE----eec-------------CCcEEEEEcCCCceeeEeccCCccccCCCCcccc
Q 013545 187 ---SGH-RDGIMTVEWSTSSEWILVT----GGC-------------DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKR 245 (441)
Q Consensus 187 ---~~h-~~~v~~v~fsp~~~~~l~s----~s~-------------Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (441)
.+. ...+..+.+.|++. +++| |.. .+.|..||..+++..
T Consensus 123 ~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~------------------- 182 (305)
T 3dr2_A 123 GRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ------------------- 182 (305)
T ss_dssp CEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE-------------------
T ss_pred eccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE-------------------
Confidence 111 12356788888886 4555 221 122333332211100
Q ss_pred cccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecC
Q 013545 246 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD 325 (441)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 325 (441)
... .....+.++|+||++.|..+...
T Consensus 183 -----------------------------------------------------~~~-~~~~p~gl~~spdg~~lyv~~~~ 208 (305)
T 3dr2_A 183 -----------------------------------------------------RMA-DLDHPNGLAFSPDEQTLYVSQTP 208 (305)
T ss_dssp -----------------------------------------------------EEE-EESSEEEEEECTTSSEEEEEECC
T ss_pred -----------------------------------------------------EEe-cCCCCcceEEcCCCCEEEEEecC
Confidence 001 12345789999999977666554
Q ss_pred ------CcEEEeeCCCCCceeeeeeeE-EeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEE
Q 013545 326 ------SRIRLWDVESGRNTLVNFETV-RLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC 398 (441)
Q Consensus 326 ------~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~ 398 (441)
++|++|++.... +...... ......+..+++.+++.+. +++...+.+|+. +++.+..+..+. .+.+++
T Consensus 209 ~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~gv~~~~~-~g~~~~~~~~~~-~~~~~~ 283 (305)
T 3dr2_A 209 EQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGTGVCVFDS-DGQLLGHIPTPG-TASNCT 283 (305)
T ss_dssp C---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTSCEE-ECCSSEEEEECT-TSCEEEEEECSS-CCCEEE
T ss_pred CcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCCCEE-EecCCcEEEECC-CCCEEEEEECCC-ceeEEE
Confidence 789999987543 1111111 1112334456777888844 444567899998 677777777665 589999
Q ss_pred EcCCCCeEEEeecCCcEEE
Q 013545 399 FSSQDQELYTGGNDRQILV 417 (441)
Q Consensus 399 fspd~~~l~s~s~D~~i~v 417 (441)
|+|+++.|+.++.++..++
T Consensus 284 f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 284 FDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp ECTTSCEEEEEETTEEEEE
T ss_pred EeCCCCEEEEEcCCeEEEE
Confidence 9999988887777765554
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.11 E-value=1.1e-07 Score=87.86 Aligned_cols=247 Identities=15% Similarity=0.122 Sum_probs=148.1
Q ss_pred CCCceeEEEccCCCCcEEEE-------eeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeC
Q 013545 42 HKGSINSLQVDLTEERYLLS-------GASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV 114 (441)
Q Consensus 42 H~~~V~~l~~s~~~~~~l~s-------~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~ 114 (441)
......+++|++ +++++++ +..++.|.+||..+++.. .+. .....++...+..+.+.+
T Consensus 16 ~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-----------~~~--~~~~~~~~~~~~~i~~~~- 80 (314)
T 1pjx_A 16 DIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-----------VIC--KPEVNGYGGIPAGCQCDR- 80 (314)
T ss_dssp CCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEE-----------EEE--CCEETTEECCEEEEEECS-
T ss_pred cCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-----------EEE--ecccCCCCCCCceEEEec-
Confidence 345678899985 5677777 678899999997655321 000 000113445577777765
Q ss_pred C-CCEEEEEeCCCcEEEEECCCCeEEEE-EecC-----CeeEEEeeccCCCCccEEEEEeCC---------------CcE
Q 013545 115 D-TGLFVTGSYDHYVKVWDTNCTRVVMN-FKMP-----GKVYRTAMSPLAASHMLIAAGTED---------------VQV 172 (441)
Q Consensus 115 ~-~~~l~sgs~D~~i~iWd~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~las~s~d---------------~~I 172 (441)
+ +.++++ +....|.+||.. ++.... .... ..+..+.+.+.+ .+.++...+ +.|
T Consensus 81 ~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 81 DANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG---NLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SSSEEEEE-ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS---CEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred CCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC---CEEEEecCcccccccccccccCCCCeE
Confidence 5 544444 444579999998 665432 2211 124556666542 344444433 467
Q ss_pred EEEECCCCceeeeecCCCCCeEEEEEe----cCCCcEEEEeecCCcEEEEEcC-CCceeeEeccCCccccCCCCcccccc
Q 013545 173 RLCDIASGAISQTLSGHRDGIMTVEWS----TSSEWILVTGGCDGAIRFWDIR-RAGCFRVLDQSQSQLGRRPPLLKRKS 247 (441)
Q Consensus 173 ~vwdl~~~~~~~~l~~h~~~v~~v~fs----p~~~~~l~s~s~Dg~I~iWD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (441)
..+|.+ ++... +..+......++|+ |+++.++++...++.|.+||+. .+.. .....
T Consensus 156 ~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~-~~~~~---------------- 216 (314)
T 1pjx_A 156 YCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI-ENKKV---------------- 216 (314)
T ss_dssp EEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE-EEEEE----------------
T ss_pred EEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc-ccceE----------------
Confidence 777766 55433 33344556889999 9987666666678999999975 2211 00000
Q ss_pred cccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeec-cCeEEEEEccCCCEEEEeecCC
Q 013545 248 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY-GAVTGLKVTEDGMYLLSAGSDS 326 (441)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~sgs~D~ 326 (441)
.. ....+. ..+..++++++|..+++...++
T Consensus 217 --------------------------------------~~-----------~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 217 --------------------------------------WG-----------HIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp --------------------------------------EE-----------ECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred --------------------------------------EE-----------ECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 00 000111 3356799999999999888889
Q ss_pred cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCC--ceEEEEccC
Q 013545 327 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT--AVKAFDIWS 380 (441)
Q Consensus 327 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~wd~~~ 380 (441)
.|.+||..+++.. .........+..+++.+++..++++... .+..|++..
T Consensus 248 ~i~~~d~~~g~~~----~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 248 HIEVFGPDGGQPK----MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEECTTCBSCS----EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEcCCCCcEe----EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999999865432 1122233456677888888866665443 777777643
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.07 E-value=2.7e-07 Score=84.86 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=141.9
Q ss_pred ecCCCCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCE
Q 013545 39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118 (441)
Q Consensus 39 ~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 118 (441)
+..+..---+..|++.++.++++...++.|..||..++... .+ .+...+.++++.+ ++.+
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-----------~~--------~~~~~~~~i~~~~-dG~l 67 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-----------RV--------TMDAPVSSVALRQ-SGGY 67 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-----------EE--------ECSSCEEEEEEBT-TSSE
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-----------EE--------eCCCceEEEEECC-CCCE
Confidence 33444455678888766778888889999999998754310 01 1223466777765 6765
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecC-----CeeEEEeeccCCCCccEEEEEeC--------CCcEEEEECCC-Cceee
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFKMP-----GKVYRTAMSPLAASHMLIAAGTE--------DVQVRLCDIAS-GAISQ 184 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~las~s~--------d~~I~vwdl~~-~~~~~ 184 (441)
+++. +..|.+||..+++........ .....+.+.+++ ..++.+-.. .....+|.+.. ++. .
T Consensus 68 ~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG--~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~ 142 (297)
T 3g4e_A 68 VATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG--RYFAGTMAEETAPAVLERHQGALYSLFPDHHV-K 142 (297)
T ss_dssp EEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS--CEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred EEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC--CEEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence 5543 568999999888754333321 224556666543 333332221 12345555543 333 2
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC--CCcee--eEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR--RAGCF--RVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA 260 (441)
Q Consensus 185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (441)
.+..+......++|+|+++.++++.+.++.|..||+. ++... +.+.
T Consensus 143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~------------------------------ 192 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVY------------------------------ 192 (297)
T ss_dssp EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEE------------------------------
T ss_pred EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEE------------------------------
Confidence 2333445568999999998777777778999999874 22110 0000
Q ss_pred CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee
Q 013545 261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 340 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~ 340 (441)
....+.+.+..++++++|.+.++...+++|..||..+++..
T Consensus 193 --------------------------------------~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~- 233 (297)
T 3g4e_A 193 --------------------------------------KLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL- 233 (297)
T ss_dssp --------------------------------------ECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE-
T ss_pred --------------------------------------ECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE-
Confidence 00011234668999999998888888899999999877632
Q ss_pred eeeeeEEeccCcceEEEee-CCCcEEEEe
Q 013545 341 VNFETVRLQTSKPIQLATT-QDPAVVFVP 368 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 368 (441)
..+......+..+++. +++..+++.
T Consensus 234 ---~~i~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 234 ---QTVKLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp ---EEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred ---EEEECCCCCceEEEEeCCCCCEEEEE
Confidence 2223333456677776 676666554
No 213
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.05 E-value=1.6e-08 Score=105.62 Aligned_cols=157 Identities=11% Similarity=0.082 Sum_probs=95.2
Q ss_pred CCCCceeEEEccCCCCcEEEEeeCC-----CcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 41 PHKGSINSLQVDLTEERYLLSGASD-----SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
+|...+..++||| ++++|+.++.+ .+|++||+.+++... . . .+...+..+.|+| |
T Consensus 160 ~~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~----------~-~-------~~~~~~~~~~wsp-D 219 (741)
T 1yr2_A 160 DGATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLA----------D-E-------LKWVKFSGLAWLG-N 219 (741)
T ss_dssp ---EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEE----------E-E-------EEEEESCCCEEST-T
T ss_pred CCCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCC----------c-c-------CCCceeccEEEEC-C
Confidence 3445788999997 57778776654 469999998765311 0 0 0111123567776 6
Q ss_pred CCEEEEEeCCCc--------------EEEEECCCCeE--EEEEecCC---eeEEEeeccCCCCccEEEEEeC-----CCc
Q 013545 116 TGLFVTGSYDHY--------------VKVWDTNCTRV--VMNFKMPG---KVYRTAMSPLAASHMLIAAGTE-----DVQ 171 (441)
Q Consensus 116 ~~~l~sgs~D~~--------------i~iWd~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~las~s~-----d~~ 171 (441)
+.|+.++.|.. |.+|++.++.. ...+.... .+....+++++. .|+..+. +..
T Consensus 220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~---~l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR---WVVITSSEGTDPVNT 295 (741)
T ss_dssp -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC---EEEEEEECTTCSCCE
T ss_pred -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC---EEEEEEEccCCCcce
Confidence 78887777654 89999977652 22333222 356777877643 3443332 348
Q ss_pred EEEEECCCC--ceeeeecCCCCCeEEEEEecCCCcEEEEeec---CCcEEEEEcCC
Q 013545 172 VRLCDIASG--AISQTLSGHRDGIMTVEWSTSSEWILVTGGC---DGAIRFWDIRR 222 (441)
Q Consensus 172 I~vwdl~~~--~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~---Dg~I~iWD~~~ 222 (441)
|++||++++ +....+..+...+.... +|+++.+++.... ++.|.+||+.+
T Consensus 296 l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 296 VHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 999999887 41455555555555553 4888865544332 34588888765
No 214
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.04 E-value=7.8e-07 Score=81.22 Aligned_cols=233 Identities=13% Similarity=0.121 Sum_probs=151.0
Q ss_pred ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCc
Q 013545 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA 181 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~ 181 (441)
.+.++.+.+ ++.+.++...++.|.+||.. ++... +..+ ..+..+.+.+. ..+.++...++.|..+|.+ ++
T Consensus 21 ~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 21 GPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSL---GDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp CEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECTT-SC
T ss_pred CcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCC---CCEEEEecCCCeEEEECCC-CC
Confidence 445566655 67777777778999999988 55433 3332 33555555543 2355555557789999988 65
Q ss_pred ee-eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCC
Q 013545 182 IS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRA 260 (441)
Q Consensus 182 ~~-~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (441)
.. ..+......+.++++.+++. ++++...++.|..||.. ++... +..
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~-~~~----------------------------- 141 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYE-YDL----------------------------- 141 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEE-EEC-----------------------------
T ss_pred eEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEE-ccC-----------------------------
Confidence 43 22333446789999999886 56666667889888865 32110 000
Q ss_pred CCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee
Q 013545 261 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL 340 (441)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~ 340 (441)
......+.+++++++|+..++...++.|..+|. +++...
T Consensus 142 ----------------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~ 180 (300)
T 2qc5_A 142 ----------------------------------------PNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE 180 (300)
T ss_dssp ----------------------------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred ----------------------------------------CCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE
Confidence 001124678999999998887777889999998 443211
Q ss_pred eeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEe-eecccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545 341 VNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 418 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~-~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW 418 (441)
+. .......+..+++.+++.+.++... ..+..++. +++... .+..+...+.+++++++|+..++...++.|.++
T Consensus 181 --~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 256 (300)
T 2qc5_A 181 --YP-LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRI 256 (300)
T ss_dssp --EE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred --ee-CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEE
Confidence 11 0111234566777888876665543 46888888 555433 244456678999999999877777667899999
Q ss_pred CCC
Q 013545 419 CPS 421 (441)
Q Consensus 419 ~~~ 421 (441)
++.
T Consensus 257 ~~~ 259 (300)
T 2qc5_A 257 TND 259 (300)
T ss_dssp CTT
T ss_pred CCC
Confidence 984
No 215
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.00 E-value=3e-08 Score=93.83 Aligned_cols=280 Identities=9% Similarity=-0.036 Sum_probs=157.2
Q ss_pred EEEEEeCCC----cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEe----------CCCcEEEEECCCCcee
Q 013545 118 LFVTGSYDH----YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT----------EDVQVRLCDIASGAIS 183 (441)
Q Consensus 118 ~l~sgs~D~----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s----------~d~~I~vwdl~~~~~~ 183 (441)
.+++-..++ +|-+.|..+++.+.++...... .+.+++++. .+.++. .++.|.+||+.+++.+
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~---~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv 109 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGS---DFALASTSFARSAKGKRTDYVEVFDPVTFLPI 109 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSS---CEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCC---EEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence 344545455 8889999999999988865444 688888754 233332 3678999999999998
Q ss_pred eeecCC-------CCCeEEEEEecCCCcEEEEeec-CCcEEE--EEcCCCceeeEeccCCccccCCCCcccccccccCcc
Q 013545 184 QTLSGH-------RDGIMTVEWSTSSEWILVTGGC-DGAIRF--WDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQN 253 (441)
Q Consensus 184 ~~l~~h-------~~~v~~v~fsp~~~~~l~s~s~-Dg~I~i--WD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (441)
.++.-+ ......+.|+|++++++++... +..|.+ +|+.+ ...+..... .... ...
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-----~~~~-----p~g-- 174 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-----FHIH-----PGA-- 174 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-----CCCE-----EEE--
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-----eEEc-----cCC--
Confidence 887533 1235689999999987655433 467888 99865 222211000 0000 000
Q ss_pred CCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeC
Q 013545 254 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 333 (441)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~ 333 (441)
.........++..+.+.... ... ....+.. ... .....-..+. . ++++..++-.+. ++|.+.|+
T Consensus 175 ----~~~~~~~~~dg~~~~vd~~~-~~~---~~~~v~~-~~t--~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~ 238 (368)
T 1mda_H 175 ----AATHYLGSCPASLAASDLAA-APA---AAGIVGA-QCT--GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDI 238 (368)
T ss_dssp ----TTEEECCCCTTSCEEEECCS-SCC---CCEECCC-CSC--TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEEC
T ss_pred ----CeEEEEEcCCCCEEEEECcc-ccc---cCCeEEE-Eee--eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEEC
Confidence 00000000111110000000 000 0000000 000 0000111233 3 555555555555 89999998
Q ss_pred CCCCceeeeeeeEEe----------ccCcceEEEeeCCCcEEEEeC----------CCceEEEEccCCceEeeecccccc
Q 013545 334 ESGRNTLVNFETVRL----------QTSKPIQLATTQDPAVVFVPC----------MTAVKAFDIWSGKTCLTFRGHYEY 393 (441)
Q Consensus 334 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~wd~~~~~~~~~l~gh~~~ 393 (441)
.+...... ....+ .......+++++++..+++.. ...+.++|..+++.+.++.... .
T Consensus 239 ~~~~~~v~--~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~ 315 (368)
T 1mda_H 239 PAAGATMK--AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-D 315 (368)
T ss_dssp CSSCCEEE--CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-E
T ss_pred CCCcceEE--EEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-C
Confidence 75432211 11000 011111257889988887652 2356799999999998887655 5
Q ss_pred eEEEEEcCCCCe-EEEee-cCCcEEEeCCCCCCCC-CccCCccCC
Q 013545 394 VNCCCFSSQDQE-LYTGG-NDRQILVWCPSRHISD-GVDAGPMQD 435 (441)
Q Consensus 394 v~~v~fspd~~~-l~s~s-~D~~i~vW~~~~~~~~-~~~~~~~~~ 435 (441)
.+.++|+|||++ +++.. .+++|.++|+.+.+.. .+..|+...
T Consensus 316 p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~ 360 (368)
T 1mda_H 316 SDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE 360 (368)
T ss_dssp ECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred cceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence 899999999985 56666 5999999999998844 343455443
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.98 E-value=3.7e-07 Score=88.07 Aligned_cols=250 Identities=13% Similarity=0.099 Sum_probs=145.6
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
.....|++++ +++++++...++.|++||..++... .+. . .. .... +++.+ +++.|+.+.
T Consensus 131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~----------~~~---~----~~-~~~~-ia~~~-~g~~l~~~d 189 (409)
T 3hrp_A 131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVT----------TVH---P----GF-KGGK-PAVTK-DKQRVYSIG 189 (409)
T ss_dssp CCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEE----------EEE---E----TC-CBCB-CEECT-TSSEEEEEB
T ss_pred CCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEE----------Eee---c----cC-CCCc-eeEec-CCCcEEEEe
Confidence 4677899985 5777888888899999998754321 000 0 00 1112 45554 677888887
Q ss_pred CCC--cEEEEECCCCeEEEEE----e-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee----ecCCCCC
Q 013545 124 YDH--YVKVWDTNCTRVVMNF----K-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT----LSGHRDG 192 (441)
Q Consensus 124 ~D~--~i~iWd~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~----l~~h~~~ 192 (441)
.++ .|.+||...+.....+ . .......+++.+. +..+++ +..++.|+.||++++..... ..++...
T Consensus 190 ~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~--~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 190 WEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDET--EEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp SSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTT--SSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred cCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCC--CCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 766 7888887665543333 1 1233455666653 223333 56678999999988764322 2233322
Q ss_pred e-E-EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545 193 I-M-TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG 270 (441)
Q Consensus 193 v-~-~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (441)
- . .++|+|++..++++-..++.|+.||.... ...+-.....
T Consensus 267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~----------------------------------- 309 (409)
T 3hrp_A 267 NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQ----------------------------------- 309 (409)
T ss_dssp SSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTC-----------------------------------
T ss_pred CccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCC-----------------------------------
Confidence 2 3 99999965667788778899999986532 1111000000
Q ss_pred ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEee-cCCcEEEeeCCCCCceeeeeeeE---
Q 013545 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTLVNFETV--- 346 (441)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~~wd~~~~~~~~~~~~~~--- 346 (441)
.+..+.. ...+.......|+++|+|.++++-+ .+.+|+.|++.++.... +...
T Consensus 310 -----------~g~~dg~----------~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~--~~g~~~~ 366 (409)
T 3hrp_A 310 -----------KTVQDGL----------REEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST--VAGQVDV 366 (409)
T ss_dssp -----------CSCBCEE----------GGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE--EEECTTC
T ss_pred -----------CCcCCCc----------ccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE--EeCCCCC
Confidence 0000000 0011223467899999999888888 89999999977664211 1110
Q ss_pred E---------eccCcceEEEeeCCCcEEEEeCC-CceEEEE
Q 013545 347 R---------LQTSKPIQLATTQDPAVVFVPCM-TAVKAFD 377 (441)
Q Consensus 347 ~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd 377 (441)
. .....|..+++.+++.++++... ..++.+.
T Consensus 367 ~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 367 ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred CCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 0 00234667888888655554433 3455444
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.96 E-value=7.1e-08 Score=99.83 Aligned_cols=158 Identities=14% Similarity=0.179 Sum_probs=98.8
Q ss_pred CCCCceeEEEccCCCCcEEE-----EeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCC
Q 013545 41 PHKGSINSLQVDLTEERYLL-----SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 41 ~H~~~V~~l~~s~~~~~~l~-----s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~ 115 (441)
+|...+..++||| ++++|| +|+.+.+|++||+.+++... . .. +......+.|+ |
T Consensus 126 ~~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~------~-----~~-------~~~k~~~~~Ws--D 184 (693)
T 3iuj_A 126 DGTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLE------T-----PL-------KDVKFSGISWL--G 184 (693)
T ss_dssp TSCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEE------E-----EE-------EEEESCCCEEE--T
T ss_pred CCcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCc------c-----cc-------CCceeccEEEe--C
Confidence 4666788999997 577776 34445679999998875321 0 00 00001235566 7
Q ss_pred CCEEEEEeCCCc-------------EEEEECCCCeE--EEEEecCC----eeEEEeeccCCCCccEEEEEe---CCCcEE
Q 013545 116 TGLFVTGSYDHY-------------VKVWDTNCTRV--VMNFKMPG----KVYRTAMSPLAASHMLIAAGT---EDVQVR 173 (441)
Q Consensus 116 ~~~l~sgs~D~~-------------i~iWd~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~las~s---~d~~I~ 173 (441)
++.|+.++.|.. |.+|++.++.. ...+.... ......+++++. .++++.. .++.|+
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDR--FLLISAANSTSGNRLY 262 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSC--EEEEEEESSSSCCEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCC--EEEEEEccCCCCcEEE
Confidence 888888887743 99999977642 23333332 245667777643 3444443 235899
Q ss_pred EEECCCCc-eeeeecCCCCCeEEEEEecCCCcEEEEeecC---CcEEEEEcCC
Q 013545 174 LCDIASGA-ISQTLSGHRDGIMTVEWSTSSEWILVTGGCD---GAIRFWDIRR 222 (441)
Q Consensus 174 vwdl~~~~-~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D---g~I~iWD~~~ 222 (441)
++|++++. ....+..+....... ++++++.+++.+..+ +.|..+|+.+
T Consensus 263 ~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~ 314 (693)
T 3iuj_A 263 VKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN 314 (693)
T ss_dssp EEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred EEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 99998874 345666676666665 667777666666554 5677777764
No 218
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.95 E-value=1.7e-07 Score=96.47 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=45.0
Q ss_pred CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 371 TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 371 ~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
+.+..||+.+++.+-.+. +..+++...+++++..++.++.|+.+++||..+++.
T Consensus 457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 468899999999887765 445567777888899999999999999999998874
No 219
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.93 E-value=4.9e-07 Score=93.20 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=44.7
Q ss_pred CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 371 TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 371 ~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
+.+..||+.+|+.+-.+..+. ++..-.++..+..++.|+.|+.++.||..+++..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred eeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 458899999999888776554 3444567778889999999999999999998843
No 220
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.92 E-value=2.4e-09 Score=102.07 Aligned_cols=204 Identities=10% Similarity=0.029 Sum_probs=111.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCC-e
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG-I 193 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~-v 193 (441)
+++++++++.|+.|..||..+|+.+..+.. +.+....+. .+..++++++.|+.|+.||.++|+.+..++.+... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~---~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTH---VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC--------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceE---cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 467899999999999999999999887776 443322222 23346777789999999999999876665433211 1
Q ss_pred E-EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcc
Q 013545 194 M-TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVR 272 (441)
Q Consensus 194 ~-~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (441)
. +..+..+ . .+++++.|+.|..||.++++..-.+.
T Consensus 84 ~~sp~~~~~-~-~v~~g~~dg~v~a~D~~tG~~~w~~~------------------------------------------ 119 (369)
T 2hz6_A 84 QASPCRSSD-G-ILYMGKKQDIWYVIDLLTGEKQQTLS------------------------------------------ 119 (369)
T ss_dssp TTCSCC-------CCCCEEEEEEEEECCC---------------------------------------------------
T ss_pred ccCceEecC-C-EEEEEeCCCEEEEEECCCCcEEEEec------------------------------------------
Confidence 0 1111123 3 35678889999999998764321110
Q ss_pred ccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCc
Q 013545 273 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 352 (441)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~ 352 (441)
.+. ...++|++..|++++.|++|+.||..+++.... +..... .
T Consensus 120 -----------------------------~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~-~~~~~~--~- 162 (369)
T 2hz6_A 120 -----------------------------SAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN-ATYFDY--A- 162 (369)
T ss_dssp ----------------------------------------------EEEEEEEEEEECCCSSSSSCCCE-EEEEEE--C-
T ss_pred -----------------------------CCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe-Eecccc--c-
Confidence 000 123456788888999999999999998874322 111111 1
Q ss_pred ceEEEeeCC----CcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCe
Q 013545 353 PIQLATTQD----PAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE 405 (441)
Q Consensus 353 ~~~~~~~~~----~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~ 405 (441)
..++..+ +.+++....+.+..||..+|+.+-.+......+...++++||..
T Consensus 163 --~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 163 --ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp --CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred --CccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 1112222 33444344578999999999988776633333344566677653
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.90 E-value=3e-06 Score=78.97 Aligned_cols=151 Identities=9% Similarity=-0.012 Sum_probs=94.7
Q ss_pred CCceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 43 ~~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
.....+..|+|+++.++++...++.|.+||..++... .+ .+...+.++.+.+ ++.++++.
T Consensus 48 ~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-----------~~--------~~~~~v~~i~~~~-dg~l~v~~ 107 (326)
T 2ghs_A 48 MLLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-----------VH--------ALPFMGSALAKIS-DSKQLIAS 107 (326)
T ss_dssp CSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-----------EE--------ECSSCEEEEEEEE-TTEEEEEE
T ss_pred CCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-----------EE--------ECCCcceEEEEeC-CCeEEEEE
Confidence 3445678899766777888888999999998754310 01 0123567777776 56666654
Q ss_pred eCCCcEEEEECCCCeEEEEEecC-----CeeEEEeeccCCCCccEEEEEeC------CCcEEEEECCCCceeeeecCCCC
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKMP-----GKVYRTAMSPLAASHMLIAAGTE------DVQVRLCDIASGAISQTLSGHRD 191 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~las~s~------d~~I~vwdl~~~~~~~~l~~h~~ 191 (441)
.+ .|.+||..+++........ ..+..+.+.+++ . +.++... .+.|..++ +++.. .+..+..
T Consensus 108 -~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G--~-l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~ 179 (326)
T 2ghs_A 108 -DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG--A-LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADIS 179 (326)
T ss_dssp -TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS--C-EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEES
T ss_pred -CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC--C-EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCc
Confidence 44 5999999888754332221 235566666643 2 3333321 23455555 45433 3333444
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
....++|+|+++.++++.+.++.|.+||+.
T Consensus 180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp SEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred ccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 567999999998766666677899999975
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.87 E-value=5.3e-10 Score=106.63 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=72.6
Q ss_pred CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCC
Q 013545 56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC 135 (441)
Q Consensus 56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~ 135 (441)
+..+++++.||.|..||..+++.. .... . +.+.+..+.. ++.++++++.|+.|..||.++
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~------------W~~~-----~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~t 68 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIK------------WTLK-----E--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKN 68 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEE------------EEEE-----C--CCSCCCC------CCEEECTTTCCEEEC----
T ss_pred CCEEEEEcCCCEEEEEECCCCCEE------------EEec-----C--CCceecceEc-CCCEEEEeCCCCEEEEEECCC
Confidence 457999999999999999887531 1111 0 1222222222 456788888999999999998
Q ss_pred CeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCcE
Q 013545 136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI 215 (441)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I 215 (441)
++.+..+...... .+..+|.-..+..+++++.|+.|+.||.++|+.+..+..+. ...++|++. .+++++.|+.|
T Consensus 69 G~~~w~~~~~~~~-~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v 142 (369)
T 2hz6_A 69 NEGLTKLPFTIPE-LVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTS-LLYLGRTEYTI 142 (369)
T ss_dssp -CCSEECSCCHHH-HHTTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEE
T ss_pred CceeeeeeccCcc-ccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCC-EEEEEecCCEE
Confidence 8876655432110 00112211012356677788999999999999888776554 245567665 46778889999
Q ss_pred EEEEcCCCc
Q 013545 216 RFWDIRRAG 224 (441)
Q Consensus 216 ~iWD~~~~~ 224 (441)
+.||.++++
T Consensus 143 ~a~d~~tG~ 151 (369)
T 2hz6_A 143 TMYDTKTRE 151 (369)
T ss_dssp ECCCSSSSS
T ss_pred EEEECCCCC
Confidence 999998764
No 223
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.87 E-value=1.7e-05 Score=75.26 Aligned_cols=256 Identities=11% Similarity=0.003 Sum_probs=149.9
Q ss_pred eEEEccCCCCcEEEEee----------CCCcEEEEECCCCcccCCCCceeccceeEEe-ecccccCcccceeEEEEeeCC
Q 013545 47 NSLQVDLTEERYLLSGA----------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVV-DKQHEHGHKYAISSAIWYPVD 115 (441)
Q Consensus 47 ~~l~~s~~~~~~l~s~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~~~~~~~~ 115 (441)
..++|+| ++++|..+. .++.|.+||..+.+... .+.+. ..... +......+.++| |
T Consensus 69 p~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~---------~i~~~~~~~~~--~g~~p~~~~~sp-D 135 (373)
T 2mad_H 69 PNPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---------DIELPDAPRFD--VGPYSWMNANTP-N 135 (373)
T ss_pred CCeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEE---------EEECCCccccc--cCCCccceEECC-C
Confidence 3899997 567776664 47889999997654211 00000 00000 001122456666 7
Q ss_pred CCEEEEEeC--CCcEEEEECCCCeEEEE-EecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-----
Q 013545 116 TGLFVTGSY--DHYVKVWDTNCTRVVMN-FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS----- 187 (441)
Q Consensus 116 ~~~l~sgs~--D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~----- 187 (441)
+++|+.+.. +.+|.++| .+++.+.. +..++. ..+.+... ..+++.+.|+.+.++|+ +++......
T Consensus 136 G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~--~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~ 208 (373)
T 2mad_H 136 NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAP--STFYLLCAQGGLAKTDH-AGGAAGAGLVGAML 208 (373)
T ss_pred CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCC--ceEEEEcCCCCEEEEEC-CCcEEEEEeccccc
Confidence 888887764 58899999 99998887 766554 23344432 34566778999999999 887653221
Q ss_pred CCCCC-eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccC
Q 013545 188 GHRDG-IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSA 266 (441)
Q Consensus 188 ~h~~~-v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (441)
-.... .....|.+++..+++.. ..+.+.+.|+...... .+.. .....
T Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~-v~~~--------------~~~~~---------------- 256 (373)
T 2mad_H 209 TAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGAT-NKAP--------------IDALS---------------- 256 (373)
T ss_pred cCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcce-Eeee--------------eeecC----------------
Confidence 11111 23345667665444443 5778888887643110 0000 00000
Q ss_pred CCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec----------CCcEEEeeCCCC
Q 013545 267 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS----------DSRIRLWDVESG 336 (441)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~----------D~~i~~wd~~~~ 336 (441)
..... ..-.......++++||++.+..+.. .++|.++|+.+.
T Consensus 257 ---------------~~~~~-------------~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~ 308 (373)
T 2mad_H 257 ---------------GGRKA-------------DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG 308 (373)
T ss_pred ---------------Ccccc-------------cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC
Confidence 00000 0001122345789999887665432 357999999887
Q ss_pred CceeeeeeeEEeccCcceEEEeeCCCc-EEEEeC--CCceEEEEccCCceEeee
Q 013545 337 RNTLVNFETVRLQTSKPIQLATTQDPA-VVFVPC--MTAVKAFDIWSGKTCLTF 387 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~wd~~~~~~~~~l 387 (441)
+.. ..+.. ...+..+++++|++ .+++.. ...+.++|..+++...++
T Consensus 309 ~vv----~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 309 QTS----SQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEE----EEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 532 22221 23577899999999 677765 368999999999988773
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.84 E-value=6.6e-06 Score=78.11 Aligned_cols=279 Identities=15% Similarity=0.108 Sum_probs=156.3
Q ss_pred cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCc--ccceeEEEEeeCCCCEEEEEeCCCcEEEEECC
Q 013545 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGH--KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN 134 (441)
Q Consensus 57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~ 134 (441)
..++.++.++.|..+|.++++.. ... .........+ ...+.+.... ++..++.++.|+.|..+|.+
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~------W~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~ 121 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEI------WSV----SLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTS 121 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEE------EEE----ECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred CEEEEEcCCCeEEEEEccCCcee------eee----cCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECC
Confidence 46888888999999999877531 000 0000000000 1122222222 35578888999999999999
Q ss_pred CCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCe-----EEEEEecCCCcEEEEe
Q 013545 135 CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-----MTVEWSTSSEWILVTG 209 (441)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v-----~~v~fsp~~~~~l~s~ 209 (441)
+++.+......+.+....... ...+..++.++.|..+|.++|+.+.......... ...... ++ .++.+
T Consensus 122 tG~~~W~~~~~~~~~~~p~~~----~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~--~v~~g 194 (376)
T 3q7m_A 122 DGTVAWQTKVAGEALSRPVVS----DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG--AAVVG 194 (376)
T ss_dssp TCCEEEEEECSSCCCSCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TT--EEEEC
T ss_pred CCCEEEEEeCCCceEcCCEEE----CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC--EEEEE
Confidence 999887777654432111111 2256677889999999999999877665432211 122222 33 35667
Q ss_pred ecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCccccc
Q 013545 210 GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL 289 (441)
Q Consensus 210 s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (441)
+.++.+..+|.++++..-........ +. .... .+
T Consensus 195 ~~~g~l~~~d~~tG~~~w~~~~~~~~-~~--------------------------------------------~~~~-~~ 228 (376)
T 3q7m_A 195 GDNGRVSAVLMEQGQMIWQQRISQAT-GS--------------------------------------------TEID-RL 228 (376)
T ss_dssp CTTTEEEEEETTTCCEEEEEECCC--------------------------------------------------------
T ss_pred cCCCEEEEEECCCCcEEEEEecccCC-CC--------------------------------------------cccc-cc
Confidence 88999999999877543222110000 00 0000 00
Q ss_pred CCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC
Q 013545 290 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC 369 (441)
Q Consensus 290 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (441)
......++ + .+..+..++.++.+..+|..+++.... .. ......... .++.+.+...
T Consensus 229 ----------~~~~~~p~----~--~~~~v~~~~~~g~l~~~d~~tG~~~w~-~~-----~~~~~~~~~-~~~~l~~~~~ 285 (376)
T 3q7m_A 229 ----------SDVDTTPV----V--VNGVVFALAYNGNLTALDLRSGQIMWK-RE-----LGSVNDFIV-DGNRIYLVDQ 285 (376)
T ss_dssp -----------CCCCCCE----E--ETTEEEEECTTSCEEEEETTTCCEEEE-EC-----CCCEEEEEE-ETTEEEEEET
T ss_pred ----------cccCCCcE----E--ECCEEEEEecCcEEEEEECCCCcEEee-cc-----CCCCCCceE-ECCEEEEEcC
Confidence 00001111 1 134666677889999999998864321 11 111112222 2333333334
Q ss_pred CCceEEEEccCCceEeeecc-cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 370 MTAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 370 ~~~~~~wd~~~~~~~~~l~g-h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
.+.+..+|..+|+.+-.... ....+....+ .+..|+.++.++.+.++++.+++.
T Consensus 286 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 286 NDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp TCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE
Confidence 46899999999988766542 2222333333 256788888899999999988874
No 225
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.79 E-value=1.7e-06 Score=81.82 Aligned_cols=234 Identities=11% Similarity=-0.006 Sum_probs=142.5
Q ss_pred eCCCCEEEEEeC-----CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEE---------eCCCcEEEEECC
Q 013545 113 PVDTGLFVTGSY-----DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAG---------TEDVQVRLCDIA 178 (441)
Q Consensus 113 ~~~~~~l~sgs~-----D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~---------s~d~~I~vwdl~ 178 (441)
++++..++.... +++|.+.|..+++.+.++....... +.++|++. .+.++. ..++.|.+||..
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~--~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGS--FIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSS--CEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCC--EEEEEcccccccccCCCCCEEEEEECC
Confidence 346777666654 6899999999999998888654444 88888754 233332 135789999999
Q ss_pred CCceeeeecCC-------CCCeEEEEEecCCCcEEEEee-cCCcEEEEEcCCCceeeEeccCCccccCCCCccccccccc
Q 013545 179 SGAISQTLSGH-------RDGIMTVEWSTSSEWILVTGG-CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSA 250 (441)
Q Consensus 179 ~~~~~~~l~~h-------~~~v~~v~fsp~~~~~l~s~s-~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (441)
+.+.+.++.-. ......+.|+|++++++++.. .+++|.++|+.+.+....+...
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~------------------ 179 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP------------------ 179 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC------------------
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC------------------
Confidence 99988776421 124567999999998766643 3789999999887655443110
Q ss_pred CccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEE
Q 013545 251 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL 330 (441)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~ 330 (441)
+ . ...+....+.+++.+.||++.+
T Consensus 180 ------------------------------------------------------g-~-~~~~P~g~~~~~~~~~DG~~~~ 203 (386)
T 3sjl_D 180 ------------------------------------------------------D-C-YHIFPTAPDTFFMHCRDGSLAK 203 (386)
T ss_dssp ------------------------------------------------------S-E-EEEEEEETTEEEEEETTSCEEE
T ss_pred ------------------------------------------------------C-c-ceeecCCCceeEEECCCCCEEE
Confidence 0 0 0112223345556666666666
Q ss_pred eeCCC-CCceeeeeeeEEecc-Ccce--EEEe-eCCCcEEEEeCCCceEEEEccCCc--eEeeec----------ccccc
Q 013545 331 WDVES-GRNTLVNFETVRLQT-SKPI--QLAT-TQDPAVVFVPCMTAVKAFDIWSGK--TCLTFR----------GHYEY 393 (441)
Q Consensus 331 wd~~~-~~~~~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~~~~~~~~wd~~~~~--~~~~l~----------gh~~~ 393 (441)
.++.+ ++... .....+.. ..++ ...+ .+++..+++...+.+.++|..++. ....+. -..+.
T Consensus 204 v~~~~~g~v~~--~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g 281 (386)
T 3sjl_D 204 VAFGTEGTPEI--THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG 281 (386)
T ss_dssp EECCSSSCCEE--EECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECS
T ss_pred EECCCCCeEEE--eecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCC
Confidence 66654 33211 00000001 1111 1233 357767777667788999986654 222221 01234
Q ss_pred eEEEEEcCCCCeEEEeec----------CCcEEEeCCCCCCC
Q 013545 394 VNCCCFSSQDQELYTGGN----------DRQILVWCPSRHIS 425 (441)
Q Consensus 394 v~~v~fspd~~~l~s~s~----------D~~i~vW~~~~~~~ 425 (441)
...++++|+++.|+.+-. ..+|-+.|+.+++.
T Consensus 282 ~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 282 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 456888999999886532 24677788888874
No 226
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.77 E-value=5.5e-06 Score=79.16 Aligned_cols=222 Identities=14% Similarity=0.165 Sum_probs=134.5
Q ss_pred CCCE-EEEEeCCCcEEEEECCCC----eEEEEEe-------cCC-eeEEEeeccCCCCccEEEEEeCC------CcEEEE
Q 013545 115 DTGL-FVTGSYDHYVKVWDTNCT----RVVMNFK-------MPG-KVYRTAMSPLAASHMLIAAGTED------VQVRLC 175 (441)
Q Consensus 115 ~~~~-l~sgs~D~~i~iWd~~~~----~~~~~~~-------~~~-~~~~~~~~~~~~~~~~las~s~d------~~I~vw 175 (441)
++++ ++++..+.+|.+.|+.+. +....+. ... ....+...|+ . +++++..+ +.|.+.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd---G-i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD---A-IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS---C-EEEEEEEETTSCSCCEEEEE
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC---e-EEEEcCCCcCCCCCCeEEEE
Confidence 4444 567778899999999755 5555552 111 1223344443 2 44444444 689999
Q ss_pred ECCCCceeeeecC--CCCC-eEEEEEecCCCcEEEEee-------------------cCCcEEEEEcCCCceeeEeccCC
Q 013545 176 DIASGAISQTLSG--HRDG-IMTVEWSTSSEWILVTGG-------------------CDGAIRFWDIRRAGCFRVLDQSQ 233 (441)
Q Consensus 176 dl~~~~~~~~l~~--h~~~-v~~v~fsp~~~~~l~s~s-------------------~Dg~I~iWD~~~~~~~~~~~~~~ 233 (441)
|.++.+.+.++.- .... -..+.|+|+++ .++++. .+.+|.+||+.+++....+....
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred ECCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 9999999888762 2211 23477899988 466664 26899999998754433331100
Q ss_pred ccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEE-
Q 013545 234 SQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV- 312 (441)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~- 312 (441)
.+ .....|.|
T Consensus 249 --------------------------------------------------------------------~g-~~P~~i~f~ 259 (462)
T 2ece_A 249 --------------------------------------------------------------------EN-RMALELRPL 259 (462)
T ss_dssp --------------------------------------------------------------------TE-EEEEEEEEC
T ss_pred --------------------------------------------------------------------CC-CccceeEee
Confidence 00 11334545
Q ss_pred -ccCCCEEEEee------cCCcEEEeeCCCCCceeee---eeeEEec-------------cCcceEEEeeCCCcEEEEeC
Q 013545 313 -TEDGMYLLSAG------SDSRIRLWDVESGRNTLVN---FETVRLQ-------------TSKPIQLATTQDPAVVFVPC 369 (441)
Q Consensus 313 -s~dg~~l~sgs------~D~~i~~wd~~~~~~~~~~---~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 369 (441)
+|+++++..+. .+++|.+|....++..... +...... ...+..+.+++|++.+++++
T Consensus 260 ~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSn 339 (462)
T 2ece_A 260 HDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSL 339 (462)
T ss_dssp SSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEe
Confidence 99999876666 4568887766543211111 1111000 13456678899999999986
Q ss_pred C--CceEEEEccCC---ceEeeeccc-----------c---cceEEEEEcCCCCeEEEee
Q 013545 370 M--TAVKAFDIWSG---KTCLTFRGH-----------Y---EYVNCCCFSSQDQELYTGG 410 (441)
Q Consensus 370 ~--~~~~~wd~~~~---~~~~~l~gh-----------~---~~v~~v~fspd~~~l~s~s 410 (441)
. +.+.++|+.+. +++..+.-. . +.-..+++||||++|+.+.
T Consensus 340 rg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 340 WGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 6 58999998532 333333221 0 1257899999999998776
No 227
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.77 E-value=1.1e-07 Score=89.62 Aligned_cols=227 Identities=11% Similarity=0.052 Sum_probs=138.4
Q ss_pred ceeEEEEeeCCCCEEEEEe--CCCcEEEEECCCCeEEEEEec--------CCeeEEEeeccCCCCccEEEEEeC-----C
Q 013545 105 AISSAIWYPVDTGLFVTGS--YDHYVKVWDTNCTRVVMNFKM--------PGKVYRTAMSPLAASHMLIAAGTE-----D 169 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~sgs--~D~~i~iWd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~las~s~-----d 169 (441)
.+..+++++ ++.++++.. .++.++||.+.+++. ..+.. -..+..+.+.+++ .+.++-.. +
T Consensus 18 ~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g---~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 18 APGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNG---IVWMLDNGNQSKSV 92 (343)
T ss_dssp CEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSS---EEEEEECHHHHTSC
T ss_pred CcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCC---cEEEEcCCCCcCCC
Confidence 455667765 678888864 234366666655543 22211 1235666666542 34443322 5
Q ss_pred CcEEEEECCCCceeeeecC------CCCCeEEEEEecCCCcEEEEee---cCCcEEEEEcCCCceeeEeccCCccccCCC
Q 013545 170 VQVRLCDIASGAISQTLSG------HRDGIMTVEWSTSSEWILVTGG---CDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240 (441)
Q Consensus 170 ~~I~vwdl~~~~~~~~l~~------h~~~v~~v~fsp~~~~~l~s~s---~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~ 240 (441)
..|.+||+++++.+..+.- +...+..++++|++..++++-. .++.|.+||+.+++..+.+.....
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~------ 166 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG------ 166 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT------
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc------
Confidence 7899999999987665542 2234688999987555667766 688999999987654333211000
Q ss_pred CcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE
Q 013545 241 PLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL 320 (441)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 320 (441)
. ...+ ..+.++|..+.
T Consensus 167 -----------------------------------------------------------~--~~~~---~~~~~~g~~~~ 182 (343)
T 2qe8_A 167 -----------------------------------------------------------I--APED---IDLVIDGVPVQ 182 (343)
T ss_dssp -----------------------------------------------------------T--SCCS---CCCEETTEECB
T ss_pred -----------------------------------------------------------c--cccc---cceeECCEEEE
Confidence 0 0000 12344676777
Q ss_pred EeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccC-----Cc-----eEe--eec
Q 013545 321 SAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWS-----GK-----TCL--TFR 388 (441)
Q Consensus 321 sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~-----~~-----~~~--~l~ 388 (441)
+.+.|++++.|... +.-+++++++..+++.....-++|.+.. +. ... ...
T Consensus 183 ~~~~~g~~~~~~~~------------------~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (343)
T 2qe8_A 183 IGQPDGTVIRPHLG------------------VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY 244 (343)
T ss_dssp EECTTSCEECCCCC------------------EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE
T ss_pred eccCCCceeceecc------------------cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec
Confidence 77788888777421 2236778888877776554445665432 11 001 122
Q ss_pred ccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 389 GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 389 gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
++.+....++++++|..+++...++.|.+|++.++.
T Consensus 245 g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 245 SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence 455567889999999999998889999999994444
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.75 E-value=4e-06 Score=86.25 Aligned_cols=157 Identities=10% Similarity=0.093 Sum_probs=91.9
Q ss_pred CcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeC------CCcEE
Q 013545 56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY------DHYVK 129 (441)
Q Consensus 56 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~------D~~i~ 129 (441)
+..|+.++.|+.+..+|..+++.. ..............+.+..... + +.++.++. |+.|.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~------------W~~~~~~~~~~~~~~~~~p~v~-~-~~v~v~~~~~~~~~~g~v~ 193 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEV------------WHQNTFEGQKGSLTITGAPRVF-K-GKVIIGNGGAEYGVRGYIT 193 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEE------------EEEETTTTCCSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEE------------eeecCCcCcCcCcccccCcEEE-C-CEEEEEecccccCCCCEEE
Confidence 346888899999999999887631 1111000000001111111111 2 34444443 79999
Q ss_pred EEECCCCeEEEEEecCCee---------------------------------EEEeeccCCCCccEEEEEeCCC------
Q 013545 130 VWDTNCTRVVMNFKMPGKV---------------------------------YRTAMSPLAASHMLIAAGTEDV------ 170 (441)
Q Consensus 130 iWd~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~las~s~d~------ 170 (441)
.+|.++++.+..+...... ....+.+. ..++..++.++
T Consensus 194 a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~---~~~vy~~~~~~~~w~~~ 270 (677)
T 1kb0_A 194 AYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE---LNTMYVGTGNGSPWSHK 270 (677)
T ss_dssp EEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT---TTEEEEECCCEESSCHH
T ss_pred EEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC---CCEEEEECCCCccccCC
Confidence 9999999998777643211 01122222 23455555443
Q ss_pred -------------cEEEEECCCCceeeeecC--CC-------CCeEEEEEecCCC--cEEEEeecCCcEEEEEcCCCcee
Q 013545 171 -------------QVRLCDIASGAISQTLSG--HR-------DGIMTVEWSTSSE--WILVTGGCDGAIRFWDIRRAGCF 226 (441)
Q Consensus 171 -------------~I~vwdl~~~~~~~~l~~--h~-------~~v~~v~fsp~~~--~~l~s~s~Dg~I~iWD~~~~~~~ 226 (441)
.|..+|.++|+.+..++. |. .....+....+++ .+++.++.+|.+.++|.++++.+
T Consensus 271 ~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 271 VRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI 350 (677)
T ss_dssp HHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEe
Confidence 499999999998876653 31 2233344444663 35788999999999999998876
Q ss_pred eEe
Q 013545 227 RVL 229 (441)
Q Consensus 227 ~~~ 229 (441)
-.+
T Consensus 351 ~~~ 353 (677)
T 1kb0_A 351 SAK 353 (677)
T ss_dssp EEE
T ss_pred ccc
Confidence 543
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.66 E-value=3.3e-05 Score=73.22 Aligned_cols=258 Identities=12% Similarity=0.117 Sum_probs=147.2
Q ss_pred cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC
Q 013545 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT 136 (441)
Q Consensus 57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~ 136 (441)
..++.++.|+.|..+|.++++.. ...... +. ....... .++.++.++.++.|..+|.+++
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~------------W~~~~~---~~--~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG 163 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVA------------WQTKVA---GE--ALSRPVV---SDGLVLIHTSNGQLQALNEADG 163 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEE------------EEEECS---SC--CCSCCEE---ETTEEEEECTTSEEEEEETTTC
T ss_pred CEEEEEcCCCEEEEEECCCCCEE------------EEEeCC---Cc--eEcCCEE---ECCEEEEEcCCCeEEEEECCCC
Confidence 46778889999999999877531 100000 00 0001111 1447888889999999999999
Q ss_pred eEEEEEecCCeeEEEe--eccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCC--C--------e-EEEEEecCCC
Q 013545 137 RVVMNFKMPGKVYRTA--MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD--G--------I-MTVEWSTSSE 203 (441)
Q Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~--~--------v-~~v~fsp~~~ 203 (441)
+.+..+.......... ..+... ...+..++.++.+..+|.++|+.+........ . + ...... + .
T Consensus 164 ~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~-~ 240 (376)
T 3q7m_A 164 AVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-N-G 240 (376)
T ss_dssp CEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-T-T
T ss_pred cEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-C-C
Confidence 9887776654332110 111111 23566678889999999999998766542210 0 1 111111 2 3
Q ss_pred cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCC
Q 013545 204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG 283 (441)
Q Consensus 204 ~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (441)
.+..++.++.+..+|.++++..-...
T Consensus 241 -~v~~~~~~g~l~~~d~~tG~~~w~~~----------------------------------------------------- 266 (376)
T 3q7m_A 241 -VVFALAYNGNLTALDLRSGQIMWKRE----------------------------------------------------- 266 (376)
T ss_dssp -EEEEECTTSCEEEEETTTCCEEEEEC-----------------------------------------------------
T ss_pred -EEEEEecCcEEEEEECCCCcEEeecc-----------------------------------------------------
Confidence 34566778999999987764321100
Q ss_pred CcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCc
Q 013545 284 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPA 363 (441)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (441)
......+.. ++..|..++.++.|..+|..+++.... .. ............ .+ .
T Consensus 267 --------------------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~-~~--~~~~~~~~~~~~-~~-~ 319 (376)
T 3q7m_A 267 --------------------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT-QS--DLLHRLLTSPVL-YN-G 319 (376)
T ss_dssp --------------------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE-EC--TTTTSCCCCCEE-ET-T
T ss_pred --------------------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe-ec--ccCCCcccCCEE-EC-C
Confidence 001122222 355677788899999999998874321 11 000111111111 23 3
Q ss_pred EEEEeC-CCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeC
Q 013545 364 VVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC 419 (441)
Q Consensus 364 ~~~~~~-~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~ 419 (441)
.++++. .+.+.++|..+|+.+..+......+...... .+..|+.++.|+.|..|+
T Consensus 320 ~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 320 NLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 455554 4679999999999887766543333321111 245777788899998875
No 230
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.64 E-value=1.9e-05 Score=75.95 Aligned_cols=258 Identities=12% Similarity=0.083 Sum_probs=151.4
Q ss_pred EEEccCCCCcEEEEee----------CCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCC
Q 013545 48 SLQVDLTEERYLLSGA----------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117 (441)
Q Consensus 48 ~l~~s~~~~~~l~s~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 117 (441)
.+.++|+ +++|..+. .++.|.++|..+.+... .+.+...... ........+.+++ |++
T Consensus 122 gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~---------~I~v~g~~r~-~~g~~P~~~~~sp-DGk 189 (426)
T 3c75_H 122 HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA---------DIELPDAPRF-LVGTYQWMNALTP-DNK 189 (426)
T ss_dssp EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE---------EEEETTCCCC-CBSCCGGGSEECT-TSS
T ss_pred ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECCCCcEEE---------EEECCCcccc-ccCCCcceEEEcC-CCC
Confidence 7999975 55555544 47889999998765311 1111000000 0000111245554 788
Q ss_pred EEEEEeC--CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee----ecCCCC
Q 013545 118 LFVTGSY--DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT----LSGHRD 191 (441)
Q Consensus 118 ~l~sgs~--D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~----l~~h~~ 191 (441)
+++.+.. +++|.+.|+.+++.+.++..++. ..+.+.+. ..+++.+.|+.+.+.++.+++.... +.-...
T Consensus 190 ~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~--~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~ 264 (426)
T 3c75_H 190 NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASP--TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE 264 (426)
T ss_dssp EEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEET--TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS
T ss_pred EEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCC--cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC
Confidence 8887764 58899999999999988887654 22334332 3455667789999999977665422 211111
Q ss_pred Ce-EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCC
Q 013545 192 GI-MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNG 270 (441)
Q Consensus 192 ~v-~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (441)
++ ..+.|.++++.++++ +..+.|.+.|+...... .++...
T Consensus 265 p~~~~~~~~~dg~~~~~~-s~~g~V~ViD~~~~~~~-v~~~~~------------------------------------- 305 (426)
T 3c75_H 265 LLINHPAFSLRSGRLVWP-TYTGKIFQADLTAEGAT-FRAPIE------------------------------------- 305 (426)
T ss_dssp CBCSCCEECTTTCEEEEE-BTTSEEEEEEECSSCEE-ECCCEE-------------------------------------
T ss_pred ceeeEeeecCCCCEEEEE-eCCCcEEEEeccCCceE-Eeeeee-------------------------------------
Confidence 11 245678888765554 45788999887643210 000000
Q ss_pred ccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeec----------CCcEEEeeCCCCCcee
Q 013545 271 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS----------DSRIRLWDVESGRNTL 340 (441)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~----------D~~i~~wd~~~~~~~~ 340 (441)
+........ .-.......++++||++++..... +++|.++|+.+.+...
T Consensus 306 --------~~~~~~i~~-------------g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~ 364 (426)
T 3c75_H 306 --------ALTEAERAD-------------DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERIN 364 (426)
T ss_dssp --------SSCTTTGGG-------------TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred --------ecccccccc-------------ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEE
Confidence 000000000 001111223689999886555432 3579999999876421
Q ss_pred eeeeeEEeccCcceEEEeeCCCc-EEEEeC--CCceEEEEccCCceEeee
Q 013545 341 VNFETVRLQTSKPIQLATTQDPA-VVFVPC--MTAVKAFDIWSGKTCLTF 387 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~wd~~~~~~~~~l 387 (441)
.+.. ...+..+++++|+. .+++.. ...+.++|..+++.+.++
T Consensus 365 ----~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 365 ----KIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ----EEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ----EEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 2221 12467789999998 888876 368999999999998886
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.62 E-value=1.6e-05 Score=81.82 Aligned_cols=79 Identities=14% Similarity=0.091 Sum_probs=50.9
Q ss_pred CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccc-eEEEEEcCC
Q 013545 325 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY-VNCCCFSSQ 402 (441)
Q Consensus 325 D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~-v~~v~fspd 402 (441)
+++|+.||+.+++.... ..... ......+...+.++|.++. +.++.||..+|+++-++....+. ..-+.|+.|
T Consensus 454 ~g~l~A~D~~tG~~~W~----~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~ 528 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWE----VPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVD 528 (689)
T ss_dssp EEEEEEEETTTTEEEEE----EEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred ceeEEEEECCCCCeEeE----ccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEEC
Confidence 47899999999874322 11111 1111233445667777654 68999999999999888755433 244677889
Q ss_pred CCeEEE
Q 013545 403 DQELYT 408 (441)
Q Consensus 403 ~~~l~s 408 (441)
|+.+++
T Consensus 529 G~qyv~ 534 (689)
T 1yiq_A 529 GEQYVT 534 (689)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 876553
No 232
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.60 E-value=1.3e-05 Score=82.32 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=42.1
Q ss_pred CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 371 TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 371 ~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
+.+..||+.+|+.+-.+..+ .++....+...+.+++.++.|+.++.||..+++.
T Consensus 438 g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 45888999999987766543 3344455666788999999999999999998874
No 233
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.57 E-value=4.5e-06 Score=76.94 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=106.1
Q ss_pred eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ 262 (441)
Q Consensus 183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (441)
+..+..+........|+|+++.++++...++.|..|+.. ++ ...+
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~--------------------------------- 81 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVL--------------------------------- 81 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEE---------------------------------
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEE---------------------------------
Confidence 344444556678899999998778888888999999863 22 1111
Q ss_pred cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeee
Q 013545 263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN 342 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~ 342 (441)
..+...+..++++++|+.+++...++.|.+|+.. ++...
T Consensus 82 --------------------------------------~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~-- 120 (305)
T 3dr2_A 82 --------------------------------------LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL-- 120 (305)
T ss_dssp --------------------------------------EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--
T ss_pred --------------------------------------eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE--
Confidence 0112347789999999988777677899999986 43211
Q ss_pred eeeEE--eccCcceEEEeeCCCcEEEEe----C--------------CCceEEEEccCCceEeeecccccceEEEEEcCC
Q 013545 343 FETVR--LQTSKPIQLATTQDPAVVFVP----C--------------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ 402 (441)
Q Consensus 343 ~~~~~--~~~~~~~~~~~~~~~~~~~~~----~--------------~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd 402 (441)
+.... .....+..+++.+++.+.++. . ...+..+|..+++..... +....+.++|+||
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spd 198 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPD 198 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTT
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCC
Confidence 11100 111334567888999887752 1 124555565566544333 4456789999999
Q ss_pred CCeEEEeecC------CcEEEeCCCC
Q 013545 403 DQELYTGGND------RQILVWCPSR 422 (441)
Q Consensus 403 ~~~l~s~s~D------~~i~vW~~~~ 422 (441)
++.|+.+..+ +.|.+|++..
T Consensus 199 g~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp SSEEEEEECCC---CCCEEEEEEEET
T ss_pred CCEEEEEecCCcCCCCCEEEEEEecC
Confidence 9987766555 6899998764
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.53 E-value=5.4e-06 Score=81.94 Aligned_cols=264 Identities=12% Similarity=0.076 Sum_probs=145.2
Q ss_pred CCCEE-EEEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEE-----------------eCCCcEEE
Q 013545 115 DTGLF-VTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAG-----------------TEDVQVRL 174 (441)
Q Consensus 115 ~~~~l-~sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~-----------------s~d~~I~v 174 (441)
||.++ ++...+.+|.+.|+.+.++...+.++ .....+.+.....+..+++++ ..++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 34444 45556778999999999987755543 334455542111233344442 23457999
Q ss_pred EECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC--------------cEEEEEcCCCceeeEeccCCccccCCC
Q 013545 175 CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG--------------AIRFWDIRRAGCFRVLDQSQSQLGRRP 240 (441)
Q Consensus 175 wdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg--------------~I~iWD~~~~~~~~~~~~~~~~~~~~~ 240 (441)
.|.++.+.+.++.--. ....++++|++++.++++.... .|.+.|...... .. ..++..
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~--~v-----~~Gk~~ 251 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK--AI-----AAGDYQ 251 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH--HH-----HHTCSE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE--ec-----cCCCee
Confidence 9999988877765211 3466779999998766654432 355555432110 00 000000
Q ss_pred CcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEE
Q 013545 241 PLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL 320 (441)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 320 (441)
.. +.+.+...... .+... . ....-.....++.++|||++++
T Consensus 252 --------------~i------------~~V~VID~~~~--~~~~~--------~---~~Ipvg~~PhGv~~sPDGk~v~ 292 (595)
T 1fwx_A 252 --------------EL------------NGVKVVDGRKE--ASSLF--------T---RYIPIANNPHGCNMAPDKKHLC 292 (595)
T ss_dssp --------------EE------------TTEEEEECSGG--GCCSS--------E---EEEEEESSCCCEEECTTSSEEE
T ss_pred --------------EE------------CcEEEEeCccc--CCcee--------E---EEEecCCCceEEEEcCCCCEEE
Confidence 00 00000000000 00000 0 0000112355789999999755
Q ss_pred -EeecCCcEEEeeCCCCCce----e---eeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccC----------
Q 013545 321 -SAGSDSRIRLWDVESGRNT----L---VNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWS---------- 380 (441)
Q Consensus 321 -sgs~D~~i~~wd~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~---------- 380 (441)
++..+.+|.++|+.+.+.. + ............|..++++++| .+++... +.+-.||+.+
T Consensus 293 V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~ 371 (595)
T 1fwx_A 293 VAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKV 371 (595)
T ss_dssp EECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred EeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence 5567889999999864210 0 0001111123567889999999 6666543 6788899876
Q ss_pred CceEeeecccccc-----eEEEEEcCCCCeEEEe---ecCCcE----------EEeCCCCCCCC
Q 013545 381 GKTCLTFRGHYEY-----VNCCCFSSQDQELYTG---GNDRQI----------LVWCPSRHISD 426 (441)
Q Consensus 381 ~~~~~~l~gh~~~-----v~~v~fspd~~~l~s~---s~D~~i----------~vW~~~~~~~~ 426 (441)
.+.+.++..|-.+ -..+.++|||++|++. +.|+-+ .+.|+++++..
T Consensus 372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 4556666555433 2345678999999975 335432 77888666543
No 235
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.52 E-value=2.1e-05 Score=69.62 Aligned_cols=113 Identities=6% Similarity=0.114 Sum_probs=78.4
Q ss_pred EEEEeeCCCCEEEEEeCCC--cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545 108 SAIWYPVDTGLFVTGSYDH--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT 185 (441)
Q Consensus 108 ~~~~~~~~~~~l~sgs~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~ 185 (441)
.+.+. ++.++.|+|.++ .|+.+|+++++.+....++...+...+.+.. +.+..+...++.+.++|.++.+.+.+
T Consensus 47 GL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g--~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 47 GFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK--DKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET--TEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred eEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC--CEEEEEEeeCCEEEEEECccCcEEEE
Confidence 34444 566777888876 8999999999999988887655544444443 23444555688999999999999888
Q ss_pred ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeE
Q 013545 186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228 (441)
Q Consensus 186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~ 228 (441)
++-.. .-+. ++++++.+++|- .+++|.++|..+.+....
T Consensus 123 i~~~~-eG~g--lt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 123 FNYDG-EGWG--LTHNDQYLIMSD-GTPVLRFLDPESLTPVRT 161 (262)
T ss_dssp EECSS-CCCC--EEECSSCEEECC-SSSEEEEECTTTCSEEEE
T ss_pred EECCC-CceE--EecCCCEEEEEC-CCCeEEEEcCCCCeEEEE
Confidence 86322 2233 345677666554 467899999887654443
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.45 E-value=2e-05 Score=75.23 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=117.4
Q ss_pred CccEEEEEeCCCcEEEEECCCC----ceeeeec------C-CCCCeEEEEEecCCCcEEEEeecC------CcEEEEEcC
Q 013545 159 SHMLIAAGTEDVQVRLCDIASG----AISQTLS------G-HRDGIMTVEWSTSSEWILVTGGCD------GAIRFWDIR 221 (441)
Q Consensus 159 ~~~~las~s~d~~I~vwdl~~~----~~~~~l~------~-h~~~v~~v~fsp~~~~~l~s~s~D------g~I~iWD~~ 221 (441)
...+++.+..++.|.++|+.+. +..+++. . -......+...|++ +++|+..+ +.|.+.|..
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECC
Confidence 4567777888899999999765 4555552 0 11234567788998 67777666 789999988
Q ss_pred CCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccce
Q 013545 222 RAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRAT 301 (441)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (441)
+.+....++....
T Consensus 173 T~~v~~~~~~~~~------------------------------------------------------------------- 185 (462)
T 2ece_A 173 SFEPLGKWEIDRG------------------------------------------------------------------- 185 (462)
T ss_dssp TCCEEEECCSBCT-------------------------------------------------------------------
T ss_pred CCeEEEEEccCCC-------------------------------------------------------------------
Confidence 7655444321000
Q ss_pred eeccCeEEEEEccCCCEEEEee-------------------cCCcEEEeeCCCCCceeeeeeeEEecc--CcceE--EEe
Q 013545 302 AHYGAVTGLKVTEDGMYLLSAG-------------------SDSRIRLWDVESGRNTLVNFETVRLQT--SKPIQ--LAT 358 (441)
Q Consensus 302 ~h~~~v~~l~~s~dg~~l~sgs-------------------~D~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~--~~~ 358 (441)
-...-..+-|+|+++.+++.. .+.+|.+||+.+++. ..++.... ..+.. +++
T Consensus 186 -~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~----~~tI~vg~~g~~P~~i~f~~ 260 (462)
T 2ece_A 186 -DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR----IHSLTLGEENRMALELRPLH 260 (462)
T ss_dssp -TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE----EEEEESCTTEEEEEEEEECS
T ss_pred -CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE----eeEEecCCCCCccceeEeeE
Confidence 001112466899999888774 478999999997642 12223211 22333 345
Q ss_pred eCCCcEEEEeCC-----C--ceEEEEccCCce--Eee--ecc----------------cccceEEEEEcCCCCeEEEeec
Q 013545 359 TQDPAVVFVPCM-----T--AVKAFDIWSGKT--CLT--FRG----------------HYEYVNCCCFSSQDQELYTGGN 411 (441)
Q Consensus 359 ~~~~~~~~~~~~-----~--~~~~wd~~~~~~--~~~--l~g----------------h~~~v~~v~fspd~~~l~s~s~ 411 (441)
++++..+++.+. . ++-+|....++. ..+ +.. -......+.+||||++|+.+..
T Consensus 261 ~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr 340 (462)
T 2ece_A 261 DPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW 340 (462)
T ss_dssp STTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET
T ss_pred CCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC
Confidence 899998888764 3 455444433321 111 111 0234788999999999886554
Q ss_pred -CCcEEEeCCC
Q 013545 412 -DRQILVWCPS 421 (441)
Q Consensus 412 -D~~i~vW~~~ 421 (441)
.+.|.++++.
T Consensus 341 g~d~VavfdV~ 351 (462)
T 2ece_A 341 GIGEVRQYDIS 351 (462)
T ss_dssp TTTEEEEEECS
T ss_pred CCCEEEEEEec
Confidence 6789999986
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.44 E-value=4.5e-05 Score=70.54 Aligned_cols=218 Identities=12% Similarity=0.108 Sum_probs=129.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCCee-EEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeE
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV-YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~ 194 (441)
+..+..++.++.|..+|.. ++........... ......+ +. .+..++.++.|..+|.+ ++....+......+.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~---~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~ 180 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE---DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITS 180 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT---TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCS
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC---CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCcee
Confidence 4467778888999999988 7766555543322 1122221 12 35557777899999998 877666665555667
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS 274 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (441)
++.+.+++. +++ ++ +.|..+| .+++......
T Consensus 181 ~~~~d~~g~-l~v-~t--~~l~~~d-~~g~~~~~~~-------------------------------------------- 211 (330)
T 3hxj_A 181 AASIGKDGT-IYF-GS--DKVYAIN-PDGTEKWNFY-------------------------------------------- 211 (330)
T ss_dssp CCEECTTCC-EEE-ES--SSEEEEC-TTSCEEEEEC--------------------------------------------
T ss_pred eeEEcCCCE-EEE-Ee--CEEEEEC-CCCcEEEEEc--------------------------------------------
Confidence 777777765 444 33 7888888 5443221110
Q ss_pred CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcce
Q 013545 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 354 (441)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 354 (441)
.....+.++.+.++|...+ ++.++.|..+|.. ++.. . ..........
T Consensus 212 ---------------------------~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~~-g~~~-~---~~~~~~~~~~ 258 (330)
T 3hxj_A 212 ---------------------------AGYWTVTRPAISEDGTIYV-TSLDGHLYAINPD-GTEK-W---RFKTGKRIES 258 (330)
T ss_dssp ---------------------------CSSCCCSCCEECTTSCEEE-EETTTEEEEECTT-SCEE-E---EEECSSCCCS
T ss_pred ---------------------------cCCcceeceEECCCCeEEE-EcCCCeEEEECCC-CCEe-E---EeeCCCCccc
Confidence 0012245566777775444 6667788888753 3221 1 1111111122
Q ss_pred EEEeeCCCcEEEEeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545 355 QLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~ 423 (441)
......++.+.+....+.+..+|. +++....+......+.++.+.++|+..+ ++.+|.+++-..+..
T Consensus 259 ~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 259 SPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLEH 325 (330)
T ss_dssp CCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC---
T ss_pred cceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEecccc
Confidence 233344555444444457888886 7777776665566788888888876554 778999988766543
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.43 E-value=8.9e-05 Score=66.32 Aligned_cols=195 Identities=10% Similarity=0.021 Sum_probs=124.8
Q ss_pred eEEEEeeCCCCEEEEEeC--CCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545 107 SSAIWYPVDTGLFVTGSY--DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184 (441)
Q Consensus 107 ~~~~~~~~~~~~l~sgs~--D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~ 184 (441)
..+.+.+ ++.++++.+. +++|++.|+.+++.+..+.++.......+...+ ..+..+.-.++.+.++|.++.+.+.
T Consensus 24 ~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 24 QGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp EEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTEEEE
T ss_pred ccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCcEEE
Confidence 3466664 4555555554 689999999999999888765543333333332 2455555678899999999999888
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR 264 (441)
Q Consensus 185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (441)
++.--... ...++++++++++|- .+++|.+.|..+.+....+.....
T Consensus 101 ~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~------------------------------ 147 (266)
T 2iwa_A 101 NFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYN------------------------------ 147 (266)
T ss_dssp EEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEET------------------------------
T ss_pred EEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCC------------------------------
Confidence 87522111 233566888777665 578999999887654433311000
Q ss_pred cCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeee
Q 013545 265 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE 344 (441)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~ 344 (441)
......++.+.|. +|...++...+++|.+.|+.+++.. .
T Consensus 148 ------------------------------------~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~----~ 186 (266)
T 2iwa_A 148 ------------------------------------GHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLL----G 186 (266)
T ss_dssp ------------------------------------TEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEE----E
T ss_pred ------------------------------------CcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEE----E
Confidence 0001235677777 7766666667889999999998742 1
Q ss_pred eEEec-------------cCcceEEEeeCCCcEEEEeCC--CceEEEEc
Q 013545 345 TVRLQ-------------TSKPIQLATTQDPAVVFVPCM--TAVKAFDI 378 (441)
Q Consensus 345 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~ 378 (441)
.+.+. ...+.-+++.+++..+++.+. ..+...++
T Consensus 187 ~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 187 WILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 22221 124567899999888887765 34444444
No 239
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.34 E-value=0.00019 Score=63.03 Aligned_cols=113 Identities=11% Similarity=0.084 Sum_probs=79.2
Q ss_pred EEEEeeCCCCEEEEEeCCC--cEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeee
Q 013545 108 SAIWYPVDTGLFVTGSYDH--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT 185 (441)
Q Consensus 108 ~~~~~~~~~~~l~sgs~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~ 185 (441)
.+.+. ++.++.|.+.++ .|+..|+.+++.+....++...+...+.... +.+......++.+.++|.++.+.+.+
T Consensus 25 GL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~--~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 25 GLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR--DRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp EEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC--CEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 45554 355667777764 8999999999999998887665544444443 34555556788999999999999988
Q ss_pred ecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeE
Q 013545 186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228 (441)
Q Consensus 186 l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~ 228 (441)
++-.. .-+.++ ++++.+++|- .+++|.++|..+.+....
T Consensus 101 i~~~~-~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~ 139 (243)
T 3mbr_X 101 FRYPG-EGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGS 139 (243)
T ss_dssp EECSS-CCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEE
T ss_pred EeCCC-CceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEE
Confidence 86432 224444 5667666664 478899999887654443
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.33 E-value=0.00028 Score=63.08 Aligned_cols=205 Identities=10% Similarity=0.014 Sum_probs=124.4
Q ss_pred eEEEEEecCCe--eEEEeeccCCCCccEEEEEe--CCCcEEEEECCCCceeeeecC-CCCCeEEEEEecCCCcEEEEeec
Q 013545 137 RVVMNFKMPGK--VYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGAISQTLSG-HRDGIMTVEWSTSSEWILVTGGC 211 (441)
Q Consensus 137 ~~~~~~~~~~~--~~~~~~~~~~~~~~~las~s--~d~~I~vwdl~~~~~~~~l~~-h~~~v~~v~fsp~~~~~l~s~s~ 211 (441)
+.+.++++... ...+.++++ + .+..+.+ .++.|+++|+++++.+..+.- .......+++. ++.++++.-.
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~d--g-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAEN--D-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECST--T-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred eEEEEEECCCCCCcccEEEeCC--C-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 45566666543 356667654 2 3444333 257999999999998877642 22222345554 4456677667
Q ss_pred CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCC
Q 013545 212 DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP 291 (441)
Q Consensus 212 Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (441)
++.+.++|..+.+.+..+...
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g----------------------------------------------------------- 105 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQ----------------------------------------------------------- 105 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECC-----------------------------------------------------------
T ss_pred CCEEEEEECCCCcEEEEEECC-----------------------------------------------------------
Confidence 899999999876544433110
Q ss_pred CcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEE--eccCcceEEEeeCCCcEEEEeC
Q 013545 292 GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR--LQTSKPIQLATTQDPAVVFVPC 369 (441)
Q Consensus 292 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 369 (441)
... ...+++||+.+..+..+++|.++|..+.+.... ..... .....+..+.+. ++ .+++..
T Consensus 106 ------------~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~-I~Vg~~~~p~~~~nele~~-dg-~lyvn~ 168 (266)
T 2iwa_A 106 ------------MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK-HNVKYNGHRVIRLNELEYI-NG-EVWANI 168 (266)
T ss_dssp ------------SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE-EECEETTEECCCEEEEEEE-TT-EEEEEE
T ss_pred ------------CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE-EEECCCCcccccceeEEEE-CC-EEEEec
Confidence 000 122556777666566788999999988653211 11100 001123345555 55 455543
Q ss_pred --CCceEEEEccCCceEeeecccc-------------cceEEEEEcCCCCe-EEEeecCCcEEEeCCCC
Q 013545 370 --MTAVKAFDIWSGKTCLTFRGHY-------------EYVNCCCFSSQDQE-LYTGGNDRQILVWCPSR 422 (441)
Q Consensus 370 --~~~~~~wd~~~~~~~~~l~gh~-------------~~v~~v~fspd~~~-l~s~s~D~~i~vW~~~~ 422 (441)
...+.+.|..+++....+.-.. ...+.++|+|+++. ++|+.....+.+-++..
T Consensus 169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 3689999999999888765210 24689999999876 55676677776666544
No 241
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.33 E-value=2.7e-05 Score=73.52 Aligned_cols=287 Identities=8% Similarity=-0.037 Sum_probs=150.9
Q ss_pred CcEEEEeeCCC----cEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe--------
Q 013545 56 ERYLLSGASDS----SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS-------- 123 (441)
Q Consensus 56 ~~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs-------- 123 (441)
.+..++-..++ +|.+.|..+++... .+. . |.. + .+.++| |+.+++.+.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~---------~i~-v------G~~-P--~i~~sp-Dg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLG---------HSL-G------AFL-S--LAVAGH-SGSDFALASTSFARSAK 91 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEE---------EEE-E------CTT-C--EEEECT-TSSCEEEEEEEETTTTS
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEE---------EEe-C------CCC-C--ceEECC-CCCEEEEEccccccccc
Confidence 34556665555 88899998765321 111 1 111 2 356666 777776665
Q ss_pred --CCCcEEEEECCCCeEEEEEecC--------CeeEEEeeccCCCCccEEEEEeC--CCcEEE--EECCCCceeeeecCC
Q 013545 124 --YDHYVKVWDTNCTRVVMNFKMP--------GKVYRTAMSPLAASHMLIAAGTE--DVQVRL--CDIASGAISQTLSGH 189 (441)
Q Consensus 124 --~D~~i~iWd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~las~s~--d~~I~v--wdl~~~~~~~~l~~h 189 (441)
.+++|.+||+.+++.+.++..+ .....+.++|++. ++.++.. +..+.+ +|+.+ +.++.--
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk---~lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA---CLLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS---CEEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC---EEEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 4789999999999999988765 1234567777653 3444432 467888 99877 3444311
Q ss_pred CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC-----CceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcc
Q 013545 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-----AGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKR 264 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (441)
+ ++.+.|+++..+++.+.|+++.+.|+.+ ++... .....-..+..+. .
T Consensus 166 -~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~-~~t~~i~vg~~P~---~------------------- 218 (368)
T 1mda_H 166 -S---CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA-QCTGAQNCSSQAA---Q------------------- 218 (368)
T ss_dssp -S---CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC-CSCTTSCBCSCCE---E-------------------
T ss_pred -C---ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE-EeeeeeeCCCCcc---c-------------------
Confidence 1 1224566666677888899988888875 22110 0000000000000 0
Q ss_pred cCCCCCccccCccccc---CCCCcccccCCCccccc--ccceeeccCeEEEEEccCCCEEEEeec---------CCcEEE
Q 013545 265 SANGNGVRQSSVGRIP---AKGSVRQRLHPGMLSSQ--DRATAHYGAVTGLKVTEDGMYLLSAGS---------DSRIRL 330 (441)
Q Consensus 265 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~s~dg~~l~sgs~---------D~~i~~ 330 (441)
...+........+.+. ................. ....-+......++|+||++++..+.. +..+.+
T Consensus 219 ~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V 298 (368)
T 1mda_H 219 ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298 (368)
T ss_dssp ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred cccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEE
Confidence 0000000000000000 00000000000000000 000001111222689999987765432 235669
Q ss_pred eeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEE-eC--CCceEEEEccCCceEeeecccccceEEEEEcC
Q 013545 331 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFV-PC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS 401 (441)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fsp 401 (441)
+|+.+.+... .+... ..+..+++++|+..+++ .. ...+.++|+.+++.+.++..... .+.+++.+
T Consensus 299 iD~~t~~vv~----~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 299 VTASVGQTSG----PISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EESSSCCEEE----CCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred EECCCCeEEE----EEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 9999876321 11111 24677889999985444 33 46899999999999999886654 45666554
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.33 E-value=1.2e-05 Score=74.38 Aligned_cols=259 Identities=11% Similarity=0.065 Sum_probs=143.2
Q ss_pred EEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCCCc
Q 013545 48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHY 127 (441)
Q Consensus 48 ~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D~~ 127 (441)
++.++ .++ .|..++.++.|..|| .+++..- . ...+...+.++...+ ++ .+..++.+
T Consensus 24 ~~~~d-~~g-~l~v~t~~~~l~~~d-~~g~~~~------~-----------~~~~~~~~~~~~~~~-~g-~l~v~t~~-- 79 (330)
T 3hxj_A 24 SPILA-KNG-TIYLGSSNKNLYAIN-TDGSVKW------F-----------FKSGEIIECRPSIGK-DG-TIYFGSDK-- 79 (330)
T ss_dssp CCEEC-TTS-CEECSSTTTTTEEEC-TTSCEEE------S-----------SCGGGEEEECCEETT-TT-EECCSSCE--
T ss_pred CceEc-cCC-eEEEEcCCCEEEEEC-CCCcEEE------E-----------EecCCCcccceEEec-CC-cEEEecCc--
Confidence 34443 234 477788899999999 6554210 0 001111222333322 33 55555555
Q ss_pred EEEEECCCCeEEEEEecCCeeE-EEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEE
Q 013545 128 VKVWDTNCTRVVMNFKMPGKVY-RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWIL 206 (441)
Q Consensus 128 i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l 206 (441)
|..+|. +++.+..+....... ...+. ...+..++.++.+..+|.+ ++.......+...+.++...+++. +
T Consensus 80 l~~~d~-~g~~~~~~~~~~~~~~~~~~~-----~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l- 150 (330)
T 3hxj_A 80 VYAINP-DGTEKWRFDTKKAIVSDFTIF-----EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-I- 150 (330)
T ss_dssp EEEECC-CGGGGGGSCC-----CCEEEE-----TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-E-
T ss_pred EEEECC-CCcEEEEEECCCCcccCceEE-----CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-E-
Confidence 888886 554433222222111 11111 2246667778899999998 777666665555666777777765 3
Q ss_pred EEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcc
Q 013545 207 VTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVR 286 (441)
Q Consensus 207 ~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (441)
..++.++.|..||.. ++....+..
T Consensus 151 ~vgt~~~~l~~~d~~-g~~~~~~~~------------------------------------------------------- 174 (330)
T 3hxj_A 151 YVGSNDNYLYAINPD-GTEKWRFKT------------------------------------------------------- 174 (330)
T ss_dssp EEECTTSEEEEECTT-SCEEEEEEC-------------------------------------------------------
T ss_pred EEEcCCCEEEEECCC-CCEeEEEec-------------------------------------------------------
Confidence 456778999999976 433221110
Q ss_pred cccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEE
Q 013545 287 QRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVF 366 (441)
Q Consensus 287 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (441)
....+.++.+.+++...++. +.|..+| .+++... ...........+...+++.+.+
T Consensus 175 ----------------~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~----~~~~~~~~~~~~~~~~~g~l~v 230 (330)
T 3hxj_A 175 ----------------NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKW----NFYAGYWTVTRPAISEDGTIYV 230 (330)
T ss_dssp ----------------SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEE----EECCSSCCCSCCEECTTSCEEE
T ss_pred ----------------CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEE----EEccCCcceeceEECCCCeEEE
Confidence 00123345566777765544 7799998 5554221 1111122233445556666555
Q ss_pred EeCCCceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 367 VPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 367 ~~~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
......+..++. +++.+..+......+.++.+.+++ .|..++.++.|..+++.
T Consensus 231 ~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~ 283 (330)
T 3hxj_A 231 TSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD 283 (330)
T ss_dssp EETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTT
T ss_pred EcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCC
Confidence 544567777763 566666665555555666666665 55557778888888874
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.30 E-value=0.0002 Score=63.46 Aligned_cols=191 Identities=9% Similarity=0.056 Sum_probs=114.0
Q ss_pred eEEEEEecCCee--EEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCCc
Q 013545 137 RVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA 214 (441)
Q Consensus 137 ~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~ 214 (441)
+.+.++++.... ..+.+.. ..+..+.+.++.|+++|+++++.++.+ -..........+.++.+++..-.++.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~----~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ----GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET----TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCE
T ss_pred EEEEEEcCCCccccceEEEEC----CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCE
Confidence 345556554433 3444442 356777778889999999999988776 22333332233344556676667899
Q ss_pred EEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcc
Q 013545 215 IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGML 294 (441)
Q Consensus 215 I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (441)
+.+||..+.+.+..+...
T Consensus 118 v~V~D~~Tl~~~~ti~~~-------------------------------------------------------------- 135 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYS-------------------------------------------------------------- 135 (268)
T ss_dssp EEEEETTTTEEEEEEECS--------------------------------------------------------------
T ss_pred EEEEECCcCcEEEEEeCC--------------------------------------------------------------
Confidence 999999887655444210
Q ss_pred cccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEE--eccCcceEEEeeCCCcEEEEeC--C
Q 013545 295 SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR--LQTSKPIQLATTQDPAVVFVPC--M 370 (441)
Q Consensus 295 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~ 370 (441)
+ .+ ..|+ +|++.|+.+..+++|.++|..+.+.... +.... ........+.+. ++. +++.. .
T Consensus 136 -------~-eG--wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~-I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s 200 (268)
T 3nok_A 136 -------G-EG--WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGA-VQVKLRGQPVELINELECA-NGV-IYANIWHS 200 (268)
T ss_dssp -------S-CC--CCEE--EETTEEEEECSSSEEEEECTTTCCEEEE-EECEETTEECCCEEEEEEE-TTE-EEEEETTC
T ss_pred -------C-ce--eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEE-EEeCCCCcccccccccEEe-CCE-EEEEECCC
Confidence 0 01 1233 5677776666788999999998763211 11100 001112233333 554 44443 3
Q ss_pred CceEEEEccCCceEeeeccc-------------ccceEEEEEcCCCCeEEEee
Q 013545 371 TAVKAFDIWSGKTCLTFRGH-------------YEYVNCCCFSSQDQELYTGG 410 (441)
Q Consensus 371 ~~~~~wd~~~~~~~~~l~gh-------------~~~v~~v~fspd~~~l~s~s 410 (441)
..+.+.|..+|+.+..+.-. ..-.+.+|++|+++.|+.+|
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 57888999999987765422 13568999999876655443
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.29 E-value=0.00091 Score=59.89 Aligned_cols=219 Identities=11% Similarity=0.020 Sum_probs=128.9
Q ss_pred eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545 106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184 (441)
Q Consensus 106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~ 184 (441)
+..+++.+.++.++++-..++.|..+|+............ .....+++.+. +..+.++-..++.|.+++++......
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~--~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL--GRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec--CCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 4456776644556666667889999998765543322221 24456666653 23455555667889999987543322
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEeec--CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCC
Q 013545 185 TLSGHRDGIMTVEWSTSSEWILVTGGC--DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQ 262 (441)
Q Consensus 185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~--Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (441)
.+.........++++|++..++++... .+.|..+++... ....+.
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~-------------------------------- 162 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILA-------------------------------- 162 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEE--------------------------------
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEE--------------------------------
Confidence 222223456899999976666665433 356766665421 000000
Q ss_pred cccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeecCCcEEEeeCCCCCceee
Q 013545 263 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRNTLV 341 (441)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~~~~~~ 341 (441)
.........|+++|++.. +++-...++|.++|+...... .
T Consensus 163 --------------------------------------~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~ 203 (267)
T 1npe_A 163 --------------------------------------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-K 203 (267)
T ss_dssp --------------------------------------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-E
T ss_pred --------------------------------------ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-E
Confidence 000123578999998654 466667789999998753211 1
Q ss_pred eeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeecccc-cceEEEEEcCCCC
Q 013545 342 NFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQ 404 (441)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~-~~v~~v~fspd~~ 404 (441)
+ ......|..++.. +..++++.. ..+..+|..+++.+.++.... .....+++.||+.
T Consensus 204 -~---~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 204 -V---LEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp -E---EECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred -E---ecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 1 1112334444443 445555433 578889999999888876443 2478888888864
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.26 E-value=0.0015 Score=58.45 Aligned_cols=221 Identities=8% Similarity=0.014 Sum_probs=126.8
Q ss_pred CcEEEEECCCCeE-----EEEEec-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEe
Q 013545 126 HYVKVWDTNCTRV-----VMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199 (441)
Q Consensus 126 ~~i~iWd~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fs 199 (441)
+.|+.+|+..... ...+.. ......+++.+. +..+..+-..++.|.++++.++.....+.........+++.
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~--~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d 87 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV--DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALD 87 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT--TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEE
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecC--CCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEE
Confidence 3677777654331 111111 123345555543 33456666667899999998765443443333567899999
Q ss_pred cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI 279 (441)
Q Consensus 200 p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (441)
|++..++++-...+.|.++|+..... ..+-
T Consensus 88 ~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~------------------------------------------------- 117 (267)
T 1npe_A 88 HLGRTIFWTDSQLDRIEVAKMDGTQR-RVLF------------------------------------------------- 117 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSC-EEEE-------------------------------------------------
T ss_pred ecCCeEEEEECCCCEEEEEEcCCCCE-EEEE-------------------------------------------------
Confidence 97666777766778888888652110 0000
Q ss_pred cCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeec--CCcEEEeeCCCCCceeeeeeeEEeccCcceEE
Q 013545 280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGS--DSRIRLWDVESGRNTLVNFETVRLQTSKPIQL 356 (441)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~--D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (441)
.........++++|++.. +++... .++|..+++....... +. ......+..+
T Consensus 118 ---------------------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~--~~--~~~~~~P~gi 172 (267)
T 1npe_A 118 ---------------------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI--LA--QDNLGLPNGL 172 (267)
T ss_dssp ---------------------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE--EE--CTTCSCEEEE
T ss_pred ---------------------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE--EE--ECCCCCCcEE
Confidence 000123568899996554 444433 4688888876432111 10 1122456778
Q ss_pred EeeCCCcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEE-EeecCCcEEEeCCCCCCCC
Q 013545 357 ATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY-TGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 357 ~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~-s~s~D~~i~vW~~~~~~~~ 426 (441)
++.+++..++++.. ..+..++.........+.+ ......+++. ++.|+ +....+.|.+.++.+++..
T Consensus 173 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCce
Confidence 88888777766544 5788888865433333332 2234566654 44555 4445678999999877643
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.24 E-value=6.1e-05 Score=74.46 Aligned_cols=147 Identities=10% Similarity=0.109 Sum_probs=92.5
Q ss_pred CcE-EEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee-CCCCEEEEEe----------
Q 013545 56 ERY-LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-VDTGLFVTGS---------- 123 (441)
Q Consensus 56 ~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~~l~sgs---------- 123 (441)
+++ .++...+..|.+-|+.+.+... ++.+.. + ...-.+.+.. +++.+++.++
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~----------ii~ip~----g--~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDA----------ILEIPN----A--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEE----------EEECSS----C--CSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred CCEEEEEcCCCCEEEEEECCCceEee----------EEeCCC----C--CCCcceeeeecCCCcEEEEecccccccCCCC
Confidence 555 4666667779999998765321 111100 0 1122344433 4677777764
Q ss_pred --------CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC--------------------------
Q 013545 124 --------YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED-------------------------- 169 (441)
Q Consensus 124 --------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d-------------------------- 169 (441)
.++.+.+.|..+.+++.++...+...-+.+++++ .++.+.+.+
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdG---k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~ 241 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEG---KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI 241 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSS---SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred cccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCC---CEEEEEecCcccCcchhhccccccceEEEeeccce
Confidence 3568999999999998888765443344455542 233333322
Q ss_pred ------------CcEEEEECCC--Cce-eeeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545 170 ------------VQVRLCDIAS--GAI-SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 170 ------------~~I~vwdl~~--~~~-~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~ 222 (441)
+.|.|.|.++ ++. +..+.- .....++.++|||+++++++-.+.+|.++|+.+
T Consensus 242 ~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~ 308 (595)
T 1fwx_A 242 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 308 (595)
T ss_dssp HHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred eEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc
Confidence 2477888877 443 444432 234468999999999999988999999999875
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.22 E-value=0.001 Score=66.87 Aligned_cols=71 Identities=13% Similarity=0.169 Sum_probs=47.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEeC------CCcEEEEECCCCceeeeec
Q 013545 116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTE------DVQVRLCDIASGAISQTLS 187 (441)
Q Consensus 116 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s~------d~~I~vwdl~~~~~~~~l~ 187 (441)
+..++.++.|+.|..+|.++++.+-........ ..+..+|.-.+. .+..++. ++.|..+|.++|+.+..+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 457888889999999999999998777654310 011111211122 3444443 7899999999999876654
No 248
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.17 E-value=0.00012 Score=64.85 Aligned_cols=112 Identities=5% Similarity=-0.046 Sum_probs=78.9
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545 108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS 187 (441)
Q Consensus 108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~ 187 (441)
.+.+. ++.++.+.+.++.|+.+|+++++.+... ++...+...+.... +.+......++.+.++|.++.+.+.+++
T Consensus 59 GL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g--~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 59 GLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG--ERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp EEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS--SCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred eEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC--CEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 34443 4567788899999999999999998888 76655443444443 2345555678899999999999998886
Q ss_pred CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeE
Q 013545 188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228 (441)
Q Consensus 188 ~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~ 228 (441)
-- ..-+.++ ++++.+++|- .+++|.++|..+.+....
T Consensus 134 ~~-~eGwGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~ 170 (268)
T 3nok_A 134 YS-GEGWGLC--YWNGKLVRSD-GGTMLTFHEPDGFALVGA 170 (268)
T ss_dssp CS-SCCCCEE--EETTEEEEEC-SSSEEEEECTTTCCEEEE
T ss_pred CC-CceeEEe--cCCCEEEEEC-CCCEEEEEcCCCCeEEEE
Confidence 42 2224444 5667666654 588999999887654443
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.09 E-value=0.0026 Score=58.66 Aligned_cols=111 Identities=12% Similarity=0.009 Sum_probs=68.8
Q ss_pred eEEEEEccCCCE-EEEeecCCcEEEeeCCCCCc-eeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-----------Cce
Q 013545 307 VTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRN-TLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-----------TAV 373 (441)
Q Consensus 307 v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 373 (441)
...|+++|+|++ +++-+..++|..+++..... ....+. . ... +.-+++.+++.+.++... ..+
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~--~-~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v 262 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV--K-IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKG 262 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE--E-CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE--e-CCC-CCCeEECCCCCEEEEecCcccccccCCCccEE
Confidence 457899999985 45556778999999875321 111111 1 122 666788888876555422 235
Q ss_pred EEEEccCCceEeeecccc----cceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545 374 KAFDIWSGKTCLTFRGHY----EYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 374 ~~wd~~~~~~~~~l~gh~----~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~ 423 (441)
..+|. +++.+..+.... ..+.++++ .+++.+++....+.|.++++...
T Consensus 263 ~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 263 IKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred EEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 55665 467666665432 45777777 46777777767788988887643
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.08 E-value=0.0015 Score=65.66 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=44.7
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEe------CCCcEEEEECCCCceeeeec
Q 013545 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGT------EDVQVRLCDIASGAISQTLS 187 (441)
Q Consensus 119 l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s------~d~~I~vwdl~~~~~~~~l~ 187 (441)
++.++.|+.|.-+|.++|+.+-........ ..+...|.-.+. .+..++ .++.|+.+|.++|+.+..+.
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 778889999999999999998776654310 011111111122 344444 37899999999999876654
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.02 E-value=0.007 Score=55.29 Aligned_cols=152 Identities=9% Similarity=0.008 Sum_probs=87.0
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
.....+++++ +++++++-..++.|..||...... ..+.. ...+..+++.+ ++.++++..
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~~-----------~~~~~--------~~~p~gia~~~-dG~l~vad~ 90 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQ-----------IHATV--------EGKVSGLAFTS-NGDLVATGW 90 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEE-----------EEEEC--------SSEEEEEEECT-TSCEEEEEE
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEECCCCceE-----------EEEeC--------CCCceeEEEcC-CCcEEEEec
Confidence 4567899986 577777777889999998753210 01100 11345566665 666666554
Q ss_pred CCC--cEEEEECCCCeEEEEEecCC--eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-ee---------eecCC
Q 013545 124 YDH--YVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQ---------TLSGH 189 (441)
Q Consensus 124 ~D~--~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~~---------~l~~h 189 (441)
... .|..+|..+++......... ........ ....++++-..++.|..+|..+++. +. ...+.
T Consensus 91 ~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~---~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~ 167 (306)
T 2p4o_A 91 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL---SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV 167 (306)
T ss_dssp CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEES---SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred cCCcceEEEEcCCCCeEEEEEeCCCccccCccccc---CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCC
Confidence 432 36667777777544333321 11222221 2233455554578899999876531 11 00111
Q ss_pred CCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
......+ +|+++.++++-...+.|..+|+.
T Consensus 168 ~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~ 197 (306)
T 2p4o_A 168 FPAANGL--KRFGNFLYVSNTEKMLLLRIPVD 197 (306)
T ss_dssp SCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred CCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence 2234555 78887777777778899999875
No 252
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.02 E-value=0.0046 Score=58.74 Aligned_cols=229 Identities=6% Similarity=-0.040 Sum_probs=132.3
Q ss_pred CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCC
Q 013545 124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE 203 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~ 203 (441)
....|+..++.................+++.+. ...++.+-...+.|+.++++.+.....+.........+++.+.+.
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~--~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g 171 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD 171 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTT
T ss_pred cCccceeeccCCCcEEEEecCCCccEEEEEecC--CCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCC
Confidence 446788888876655444433344555666543 334556656678899999987654444433334456788887666
Q ss_pred cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCC
Q 013545 204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG 283 (441)
Q Consensus 204 ~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (441)
.++++-...+.|.+.++..... ..+
T Consensus 172 ~lY~~d~~~~~I~~~~~dg~~~-~~l------------------------------------------------------ 196 (386)
T 3v65_B 172 KLYWTDSGTSRIEVANLDGAHR-KVL------------------------------------------------------ 196 (386)
T ss_dssp EEEEEETTTTEEEECBTTSCSC-EEE------------------------------------------------------
T ss_pred eEEEEcCCCCeEEEEeCCCCce-EEe------------------------------------------------------
Confidence 5666655566676666542100 000
Q ss_pred CcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecC-CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC
Q 013545 284 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD 361 (441)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (441)
..........|+++|.+. .+++-... ++|...++....... + .......|.-+++.++
T Consensus 197 ----------------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~--~~~~~~~PnGlavd~~ 256 (386)
T 3v65_B 197 ----------------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--I--ADTHLFWPNGLTIDYA 256 (386)
T ss_dssp ----------------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--E--ECSSCSCEEEEEEEGG
T ss_pred ----------------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE--E--EECCCCCeeeEEEeCC
Confidence 000112357889998655 44555455 788888887543211 1 0111234667888877
Q ss_pred CcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCccC
Q 013545 362 PAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDA 430 (441)
Q Consensus 362 ~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~~ 430 (441)
...++++-. ..+..+++........+.........+++ ..+..+++-...+.|...+..++.....+.
T Consensus 257 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 257 GRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp GTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 776666533 46777776543333333333445678888 445566666667788888866665444433
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.97 E-value=0.0098 Score=59.62 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=46.8
Q ss_pred cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccc-eEEEEEcC
Q 013545 324 SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY-VNCCCFSS 401 (441)
Q Consensus 324 ~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~-v~~v~fsp 401 (441)
.++.|..||+.+++.... +. ... ..........+..+++++. +.+..||..+|+.+-++...... -.-+.+..
T Consensus 442 ~~g~l~a~D~~tG~~~W~-~~---~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~ 516 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWT-KW---EKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF 516 (571)
T ss_dssp CCEEEEEECTTTCCEEEE-EE---ESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CCCeEEEEECCCCCEEEE-ec---CCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEE
Confidence 457899999998874322 11 111 1111112223445555544 68999999999999877644321 22344567
Q ss_pred CCCeEEE
Q 013545 402 QDQELYT 408 (441)
Q Consensus 402 d~~~l~s 408 (441)
+|+.++.
T Consensus 517 ~G~~yv~ 523 (571)
T 2ad6_A 517 KGKQYIG 523 (571)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 8876664
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.95 E-value=0.0065 Score=61.05 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=38.6
Q ss_pred CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 371 TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 371 ~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
+.+..||+.+|+.+-++..+ .++..-.+...+..++.|+.|+.++.||..+++.
T Consensus 466 G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 46888999999887665433 2333323334567888899999999999998874
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.94 E-value=0.0018 Score=57.36 Aligned_cols=162 Identities=15% Similarity=0.175 Sum_probs=104.1
Q ss_pred CCCCc--eeEEEccCCCCcEEEEeeCCC--cEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 41 PHKGS--INSLQVDLTEERYLLSGASDS--SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 41 ~H~~~--V~~l~~s~~~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
+|... .-.|.|+ ++.+.+|.+.+| .|+++|+++++... . +.+. .+-.+. .+.. ++
T Consensus 38 phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~---------~-~~l~-----~~~Fge-Git~---~g 96 (262)
T 3nol_A 38 PHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQ---------Q-IELG-----KRYFGE-GISD---WK 96 (262)
T ss_dssp ECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEE---------E-EECC-----TTCCEE-EEEE---ET
T ss_pred cCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEE---------E-EecC-----Ccccee-EEEE---eC
Confidence 77643 4678897 467788888887 89999999876421 0 0111 010000 1222 23
Q ss_pred CEEE-EEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC----CC-
Q 013545 117 GLFV-TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG----HR- 190 (441)
Q Consensus 117 ~~l~-sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~----h~- 190 (441)
+.|. ..-.++.+.++|.++.+.+.+++.++.-. .++++. ..++.+ ..++.|.++|.++.+.+.++.- ..
T Consensus 97 ~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~--glt~dg--~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~ 171 (262)
T 3nol_A 97 DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW--GLTHND--QYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEEL 171 (262)
T ss_dssp TEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC--CEEECS--SCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEEC
T ss_pred CEEEEEEeeCCEEEEEECccCcEEEEEECCCCce--EEecCC--CEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccc
Confidence 3444 44458999999999999999998765332 333432 334444 3467899999999988776542 22
Q ss_pred CCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230 (441)
Q Consensus 191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~ 230 (441)
..+..+.|. +++ +++..-.++.|.+-|.++++....++
T Consensus 172 ~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id 209 (262)
T 3nol_A 172 PELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIID 209 (262)
T ss_dssp CCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEE
T ss_pred cccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEE
Confidence 334457776 554 66666568899999999988777664
No 256
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.90 E-value=0.016 Score=54.10 Aligned_cols=227 Identities=6% Similarity=-0.030 Sum_probs=132.8
Q ss_pred CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCC
Q 013545 124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE 203 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~ 203 (441)
....|+..++.................+++.+. ...+..+-...+.|..++++.+.....+.........+++.+.+.
T Consensus 51 ~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~--~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g 128 (349)
T 3v64_C 51 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD 128 (349)
T ss_dssp CBSCEEEECTTSCCEEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred cccceEEEeCCCCeeEEeecCCCceEEEEEecc--ccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCC
Confidence 345688888876554443333334555666543 334555656678899999987654444433334567888988666
Q ss_pred cEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCC
Q 013545 204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG 283 (441)
Q Consensus 204 ~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (441)
.++++-...+.|.+.++..... ..+
T Consensus 129 ~ly~~d~~~~~I~~~~~dG~~~-~~l------------------------------------------------------ 153 (349)
T 3v64_C 129 KLYWTDSGTSRIEVANLDGAHR-KVL------------------------------------------------------ 153 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCSC-EEE------------------------------------------------------
T ss_pred eEEEEcCCCCeEEEEcCCCCce-EEE------------------------------------------------------
Confidence 6767766677888887652110 000
Q ss_pred CcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecC-CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC
Q 013545 284 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD 361 (441)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (441)
..........|+++|.+ ..+.+-... ++|...++....... +. ......|.-+++.++
T Consensus 154 ----------------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~--~~~~~~PnGla~d~~ 213 (349)
T 3v64_C 154 ----------------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IA--DTHLFWPNGLTIDYA 213 (349)
T ss_dssp ----------------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--SC--CSSCSCEEEEEEETT
T ss_pred ----------------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE--EE--ECCCCCcceEEEeCC
Confidence 00001235788999854 455555555 788888887533211 00 111234677888887
Q ss_pred CcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCc
Q 013545 362 PAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGV 428 (441)
Q Consensus 362 ~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~ 428 (441)
...++++-. ..+..+++........+.........+++ ..+..+++-...+.|...+..++.....
T Consensus 214 ~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~ 281 (349)
T 3v64_C 214 GRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEI 281 (349)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred CCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEE
Confidence 777666533 46778887543333333333455678888 3455555655567788887655554333
No 257
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.88 E-value=0.00066 Score=69.52 Aligned_cols=101 Identities=13% Similarity=0.022 Sum_probs=56.7
Q ss_pred EEEEc-cCCCEEEEeecCC-----------cEEEeeCCCCCceeeeeeeEEeccCc-ceEEEeeCCCcEEEEeCC-----
Q 013545 309 GLKVT-EDGMYLLSAGSDS-----------RIRLWDVESGRNTLVNFETVRLQTSK-PIQLATTQDPAVVFVPCM----- 370 (441)
Q Consensus 309 ~l~~s-~dg~~l~sgs~D~-----------~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----- 370 (441)
++.|. .+++.++.|+.++ .|.+||..+..-... ....+.... ....+..+++.+++.++.
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~ 480 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVF--ASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP 480 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEE--CTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEE--ccCCCCCCcccCCeEECCCCCEEEECCcccCcC
Confidence 34443 3677788887543 678888876542211 000111111 123345568888777652
Q ss_pred -------CceEEEEccCCce--EeeecccccceEEEEEcCCCCeEEEeec
Q 013545 371 -------TAVKAFDIWSGKT--CLTFRGHYEYVNCCCFSSQDQELYTGGN 411 (441)
Q Consensus 371 -------~~~~~wd~~~~~~--~~~l~gh~~~v~~v~fspd~~~l~s~s~ 411 (441)
..+.+||..+.+- +..+........+..+.|||+.++.||.
T Consensus 481 ~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 481 FEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 3578999866432 2222222223345667899999999885
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.82 E-value=0.0069 Score=53.03 Aligned_cols=163 Identities=16% Similarity=0.138 Sum_probs=105.0
Q ss_pred CCCCc--eeEEEccCCCCcEEEEeeCCC--cEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCC
Q 013545 41 PHKGS--INSLQVDLTEERYLLSGASDS--SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116 (441)
Q Consensus 41 ~H~~~--V~~l~~s~~~~~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~ 116 (441)
||... .-.|.|+. +.+..|.+.+| .|+++|+++++... . +.+. .+..+. .+... ++
T Consensus 16 phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~---------~-~~l~-----~~~fge-Gi~~~--~~ 75 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQ---------R-AEVP-----PPYFGA-GIVAW--RD 75 (243)
T ss_dssp ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEE---------E-EECC-----TTCCEE-EEEEE--TT
T ss_pred CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEE---------E-EeCC-----CCccee-EEEEe--CC
Confidence 78754 55899973 66778888865 89999999876421 0 0010 111111 12221 33
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC--CC---C
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG--HR---D 191 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~--h~---~ 191 (441)
.+....-.++.+.++|.++.+.+.+++.++.-..+ +++. ..++.| ..++.|.++|.++.+.+.++.- +. .
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg--~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~ 150 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWAL--TSDD--SHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLD 150 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEE--EECS--SCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred EEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEE--eeCC--CEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccc
Confidence 34455556899999999999999999876544333 3332 334444 3478899999999988776642 21 2
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~ 230 (441)
.+.-+.+. +++ +++..-.+..|.+-|.++++....++
T Consensus 151 ~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 151 NLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp CEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred cceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEE
Confidence 34566665 454 66665567899999999988777664
No 259
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.73 E-value=0.065 Score=55.96 Aligned_cols=284 Identities=8% Similarity=0.100 Sum_probs=157.1
Q ss_pred eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCc-ccc-eeEEEEeeCCCCEEEEEe
Q 013545 46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGH-KYA-ISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~-V~~~~~~~~~~~~l~sgs 123 (441)
|++|..++ ++++.+ ++. +.|.+||.++..... ...++ ... |.++...+ ++ .+..+.
T Consensus 133 i~~i~~d~-~g~lwi-~t~-~gl~~~~~~~~~~~~-----------------~~~~~~~~~~i~~i~~d~-~g-~lwigt 190 (795)
T 4a2l_A 133 VNGIEEIS-PEQLLI-STP-EGLIMFDIKESKFID-----------------DSFSTAMHKTIASTLYRQ-GD-QIYIGT 190 (795)
T ss_dssp CCEEEEEE-TTEEEE-EET-TEEEEEETTTTEEEC-----------------SSSCHHHHTCCEEEEEEE-TT-EEEEEE
T ss_pred EEEEEECC-CCCEEE-EEC-CceEEEECCCCEEEe-----------------ccCCCCCCcceEEEEECC-CC-CEEEEE
Confidence 88888764 455444 444 568899976542110 00011 112 55555544 44 454566
Q ss_pred CCCcEEEEECCCCeEEEEEe--cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC-------CCCCeE
Q 013545 124 YDHYVKVWDTNCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG-------HRDGIM 194 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~-------h~~~v~ 194 (441)
.++-|..||..+++...... ....+.++.... .+ .|..|+.++-+.+||.++++....... ....|.
T Consensus 191 ~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~--~g--~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 266 (795)
T 4a2l_A 191 STDGLYTYSITQKTFEKVIPILGTKQIQAILQQS--PT--RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIR 266 (795)
T ss_dssp SSSCEEEEETTTCCEEECC----CCCEEEEEEEE--TT--EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEE
T ss_pred CCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcC--CC--CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEE
Confidence 66568899987766432211 122344443332 22 234455454599999988764432211 135689
Q ss_pred EEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCcccc
Q 013545 195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQS 274 (441)
Q Consensus 195 ~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (441)
++...+++. + ..|+.+ -|.+||..++... .+.....
T Consensus 267 ~i~~d~~g~-l-Wigt~~-Gl~~~~~~~~~~~-~~~~~~~---------------------------------------- 302 (795)
T 4a2l_A 267 SLAMDSQNR-L-WIGTFN-DLNIYHEGTDSFA-SYSSNPV---------------------------------------- 302 (795)
T ss_dssp EEEECTTSC-E-EEEESS-CEEEEETTTTEEE-EECCCTT----------------------------------------
T ss_pred EEEEcCCCC-E-EEEeCC-hhheEcCCCCeEE-EEecCCC----------------------------------------
Confidence 999888876 3 334444 6999997654321 1100000
Q ss_pred CcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE----Eecc
Q 013545 275 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV----RLQT 350 (441)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~----~~~~ 350 (441)
.+ ..-....|.+|...++|..-+ |+.++-|.+|+..+.+-. .+... .+..
T Consensus 303 ---------------~~--------~~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~~~--~~~~~~~~~~l~~ 356 (795)
T 4a2l_A 303 ---------------EN--------GSLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRNRFK--NIRNIPYKNSLSD 356 (795)
T ss_dssp ---------------ST--------TSCSSSCEEEEEECTTSCEEE-EESSSCEEEECGGGGSSE--EECCCTTSSSCSC
T ss_pred ---------------CC--------CCCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCCCcccce--EEcCCCCCCCCCC
Confidence 00 000124588999999887654 667777999987654321 11100 0111
Q ss_pred CcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecc--------cccceEEEEEcCCCCeEEEeecCCcEEEeCCCC
Q 013545 351 SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG--------HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~g--------h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~ 422 (441)
.....+....++.+.+......+..|+..+++...-... ....|.+++..++|+.|..|..++-|.++++.+
T Consensus 357 ~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp SSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred CeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 223345555666666544456888898876654332111 235699999998888455566666788898877
Q ss_pred CCC
Q 013545 423 HIS 425 (441)
Q Consensus 423 ~~~ 425 (441)
++.
T Consensus 437 ~~~ 439 (795)
T 4a2l_A 437 GQV 439 (795)
T ss_dssp CCE
T ss_pred CcE
Confidence 653
No 260
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=0.031 Score=53.79 Aligned_cols=112 Identities=11% Similarity=0.030 Sum_probs=61.8
Q ss_pred eeEEEEee-CCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCC----cEEEEECCCC
Q 013545 106 ISSAIWYP-VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV----QVRLCDIASG 180 (441)
Q Consensus 106 V~~~~~~~-~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~----~I~vwdl~~~ 180 (441)
...+++.| .++ .|..+...+.|+.+|+..+..............+++.+.+ ..++++...++ .+.+.+. .+
T Consensus 139 P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G--~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 139 AVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEA--DSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTS--SEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCC--CEEEEEeCCCCcccceEEEEeC-CC
Confidence 34566664 234 4444444488999999877765444433445666776643 33444443222 2333443 33
Q ss_pred cee--eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545 181 AIS--QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 181 ~~~--~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~ 222 (441)
... ..+.. ......++++|++..++++-..++.|..+|...
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 222 22221 233467889994344666665678888888764
No 261
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.63 E-value=0.088 Score=54.93 Aligned_cols=282 Identities=10% Similarity=0.080 Sum_probs=160.3
Q ss_pred eeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEeCC
Q 013545 46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD 125 (441)
Q Consensus 46 V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs~D 125 (441)
|.++..++ +++ |.-|..++.|..||..+..... . . ...+...|.++...+ ++ .+..|..+
T Consensus 175 i~~i~~d~-~g~-lwigt~~~Gl~~~~~~~~~~~~-------~------~---~~~~~~~i~~i~~d~-~g-~lwigt~~ 234 (795)
T 4a2l_A 175 IASTLYRQ-GDQ-IYIGTSTDGLYTYSITQKTFEK-------V------I---PILGTKQIQAILQQS-PT-RIWVATEG 234 (795)
T ss_dssp CEEEEEEE-TTE-EEEEESSSCEEEEETTTCCEEE-------C------C-------CCCEEEEEEEE-TT-EEEEEEBS
T ss_pred eEEEEECC-CCC-EEEEECCCCEEEEeCCCCeEEE-------e------c---CCCCCCeeEEEEEcC-CC-CEEEEECC
Confidence 88888864 454 4446666668899976543100 0 0 001223466665544 44 45455555
Q ss_pred CcEEEEECCCCeEEEEEec---------CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecC-------C
Q 013545 126 HYVKVWDTNCTRVVMNFKM---------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG-------H 189 (441)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~-------h 189 (441)
+-|.+||..+++... +.. ...+.++.... .+. |..|+.+ -|.+||.+++........ .
T Consensus 235 ~Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~--~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~ 308 (795)
T 4a2l_A 235 AGLFLINPKTKEIKN-YLHSPSNPKSISSNYIRSLAMDS--QNR--LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLS 308 (795)
T ss_dssp SCEEEEETTTTEEEE-ECCCTTCTTSCSCSBEEEEEECT--TSC--EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCS
T ss_pred CCeEEEeCCCCeEEE-eecCCCCccccCCCeEEEEEEcC--CCC--EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCC
Confidence 558899988766433 221 12344444333 222 4445555 599999888765432211 2
Q ss_pred CCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCC
Q 013545 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGN 269 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (441)
...|.++...+++. |..|+.++-|..||..... +..+.....
T Consensus 309 ~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~-~~~~~~~~~----------------------------------- 350 (795)
T 4a2l_A 309 QRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNR-FKNIRNIPY----------------------------------- 350 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEESSSCEEEECGGGGS-SEEECCCTT-----------------------------------
T ss_pred CCcEEEEEEeCCcC--EEEEECCCCeEEeCCCccc-ceEEcCCCC-----------------------------------
Confidence 35689999988876 4557777889999865421 111100000
Q ss_pred CccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeE---
Q 013545 270 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV--- 346 (441)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~--- 346 (441)
. ..-....|.++...++|..-+ |+.++-|..||..+++... +...
T Consensus 351 ---------------------~--------~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~--~~~~~~~ 398 (795)
T 4a2l_A 351 ---------------------K--------NSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTS--YTLQEDE 398 (795)
T ss_dssp ---------------------S--------SSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEE--ECCC---
T ss_pred ---------------------C--------CCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEE--EecCCCC
Confidence 0 000123588999988887655 7777779999987654211 1100
Q ss_pred ---EeccCcceEEEeeCCCc-EEEEeCCCceEEEEccCCceEeeec----ccccceEEEEEcCCCCeEEEeecCCcEEEe
Q 013545 347 ---RLQTSKPIQLATTQDPA-VVFVPCMTAVKAFDIWSGKTCLTFR----GHYEYVNCCCFSSQDQELYTGGNDRQILVW 418 (441)
Q Consensus 347 ---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~wd~~~~~~~~~l~----gh~~~v~~v~fspd~~~l~s~s~D~~i~vW 418 (441)
.+.......+....++. +.+.....++..+|..+++...-.. .+...|.++...++|+..+... +-+.+|
T Consensus 399 ~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~ 476 (795)
T 4a2l_A 399 SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRF 476 (795)
T ss_dssp ---CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEE
T ss_pred cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEE
Confidence 01123334455566777 5544444789999987776433211 2345799999999888666543 447888
Q ss_pred CCCCCCC
Q 013545 419 CPSRHIS 425 (441)
Q Consensus 419 ~~~~~~~ 425 (441)
++.+++.
T Consensus 477 ~~~~~~~ 483 (795)
T 4a2l_A 477 NPEQRSF 483 (795)
T ss_dssp ETTTTEE
T ss_pred eCCCCeE
Confidence 8876543
No 262
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.58 E-value=0.0041 Score=63.67 Aligned_cols=77 Identities=6% Similarity=0.157 Sum_probs=50.5
Q ss_pred EEEeeCCCCEEEEEeCCC-------------------cEEEEECCCCeEEEEEecC----------CeeEEEeeccCCCC
Q 013545 109 AIWYPVDTGLFVTGSYDH-------------------YVKVWDTNCTRVVMNFKMP----------GKVYRTAMSPLAAS 159 (441)
Q Consensus 109 ~~~~~~~~~~l~sgs~D~-------------------~i~iWd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 159 (441)
+++.+ +.++++.++.++ .|..+|..+++.+-.++.. .......+..++..
T Consensus 235 ~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 235 MAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp EEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred eEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 34444 456777776665 4999999999998877653 11111112222222
Q ss_pred ccEEEEEeCCCcEEEEECCCCceeeee
Q 013545 160 HMLIAAGTEDVQVRLCDIASGAISQTL 186 (441)
Q Consensus 160 ~~~las~s~d~~I~vwdl~~~~~~~~l 186 (441)
..+++.++.++.++++|.++|+.+...
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEEECCCCEEEEEECCCCCEeccc
Confidence 236888899999999999999987443
No 263
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.54 E-value=0.05 Score=49.84 Aligned_cols=221 Identities=8% Similarity=-0.033 Sum_probs=127.1
Q ss_pred CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC----CceeeeecCCCCCeEEEEEecC
Q 013545 126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS----GAISQTLSGHRDGIMTVEWSTS 201 (441)
Q Consensus 126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~----~~~~~~l~~h~~~v~~v~fsp~ 201 (441)
..|+..|+.................+.+.+. ...+..+-..++.|..+++++ ......+.........+++.+.
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~--~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeC--CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 4688888887665544443344555666553 234566666678999999876 2222223333345678888876
Q ss_pred CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
+..++++-...+.|.+.|+........+
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~---------------------------------------------------- 115 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLF---------------------------------------------------- 115 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEE----------------------------------------------------
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEE----------------------------------------------------
Confidence 6656677666788888886531110000
Q ss_pred CCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeecC-CcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359 (441)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (441)
.........++++|.+.. +++.... ++|...++....... +. ......|..+++.
T Consensus 116 -------------------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~~--~~~~~~P~gla~d 172 (316)
T 1ijq_A 116 -------------------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV--TENIQWPNGITLD 172 (316)
T ss_dssp -------------------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EE--CSSCSCEEEEEEE
T ss_pred -------------------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--EE--ECCCCCceEEEEe
Confidence 000123578899986554 4444333 688888876432111 10 1123456778888
Q ss_pred CCCcEEEEeCC--CceEEEEccCCceEeee-c--ccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCC
Q 013545 360 QDPAVVFVPCM--TAVKAFDIWSGKTCLTF-R--GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS 425 (441)
Q Consensus 360 ~~~~~~~~~~~--~~~~~wd~~~~~~~~~l-~--gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~ 425 (441)
+++..++++.. ..+..+|+.. ....++ . +.......+++. .+..+++-...+.|...+..++..
T Consensus 173 ~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 173 LLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp TTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred ccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 87777766543 4788888753 322332 2 123345778885 355666666677888888766553
No 264
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.54 E-value=0.046 Score=52.61 Aligned_cols=114 Identities=14% Similarity=0.057 Sum_probs=60.0
Q ss_pred eeEEEEeeC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC---C-cEEEEECCCC
Q 013545 106 ISSAIWYPV-DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---V-QVRLCDIASG 180 (441)
Q Consensus 106 V~~~~~~~~-~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d---~-~I~vwdl~~~ 180 (441)
...+++.+. +...|..+...+.|+.+|+.++..............+++.+.+ . ++++...+ . .+...+...+
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG--~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNG--D-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTC--C-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCC--C-EEEEcCCCCcccceEEEEECCCC
Confidence 446677653 2334444433389999999888766544333345666776643 2 44443221 1 1333333222
Q ss_pred cee-eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545 181 AIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (441)
Q Consensus 181 ~~~-~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~ 223 (441)
... ..+. .......++++|++..++++-..++.|+.+|..++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 110 1111 22334668888833346666556678888887644
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.50 E-value=0.07 Score=50.48 Aligned_cols=216 Identities=10% Similarity=0.049 Sum_probs=120.8
Q ss_pred eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545 106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184 (441)
Q Consensus 106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~ 184 (441)
+..+.+.+.++.++.+-...+.|..+++........+... .....+++.+. ...+..+-...+.|.+.+++......
T Consensus 118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~--~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV--HDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETT--TTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeC--CCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 4567777655656667667788999998766543322211 11223444432 33455555566788888887554433
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEeecC-CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545 185 TLSGHRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK 263 (441)
Q Consensus 185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (441)
.+.........+++.|.+..++++-... +.|...++..... ..+
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~---------------------------------- 240 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RII---------------------------------- 240 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEE----------------------------------
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEE----------------------------------
Confidence 4444446678999999877666664444 5666666542100 000
Q ss_pred ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeee
Q 013545 264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVN 342 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~ 342 (441)
........+.|+|+|++. ..++-+..++|..+|+........
T Consensus 241 ------------------------------------~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~- 283 (386)
T 3v65_B 241 ------------------------------------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV- 283 (386)
T ss_dssp ------------------------------------ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE-
T ss_pred ------------------------------------EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE-
Confidence 000012357899997654 455666778899999875432111
Q ss_pred eeeEEeccCcceEEEeeCCCcEEEEe--CCCceEEEEccCCceEeeecccccceEEEEEc
Q 013545 343 FETVRLQTSKPIQLATTQDPAVVFVP--CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS 400 (441)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fs 400 (441)
+ ......|..+++. ++ .++++ ....|..++..+|+...++.........|++.
T Consensus 284 ~---~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~ 338 (386)
T 3v65_B 284 I---SQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL 338 (386)
T ss_dssp E---CSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEE
T ss_pred E---ECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEE
Confidence 1 1112345555663 33 34443 23567777777777766665443444455443
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.46 E-value=0.11 Score=51.98 Aligned_cols=80 Identities=19% Similarity=0.133 Sum_probs=48.6
Q ss_pred cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccce-EEEEEcC
Q 013545 324 SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYV-NCCCFSS 401 (441)
Q Consensus 324 ~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v-~~v~fsp 401 (441)
.+++|..||+.+++..... . ... ..........+.+++.++. ..++.||..+|+.+-+++...+.+ .-+.+..
T Consensus 464 ~~G~l~A~D~~tG~~~W~~-~---~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~ 538 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEH-K---EHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQ 538 (582)
T ss_dssp CSEEEEEECTTTCCEEEEE-E---ESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CcceEEEEECCCCCEEEEe-c---CCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEE
Confidence 4788999999998753321 1 111 1111111123456666654 689999999999998887654322 2266778
Q ss_pred CCCeEEE
Q 013545 402 QDQELYT 408 (441)
Q Consensus 402 d~~~l~s 408 (441)
||+.+++
T Consensus 539 ~G~qYv~ 545 (582)
T 1flg_A 539 DGEQYLG 545 (582)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 8875543
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.46 E-value=0.11 Score=52.02 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=46.3
Q ss_pred cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccce-EEEEEcC
Q 013545 324 SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYV-NCCCFSS 401 (441)
Q Consensus 324 ~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v-~~v~fsp 401 (441)
.++.|..||+.+++..... . ... ....-.....+.++|.++. ..++.||..+|+++-+++...+.+ .-+.+..
T Consensus 451 ~~G~l~A~D~~tG~~~W~~-~---~~~-~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~ 525 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEK-M---ERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTH 525 (599)
T ss_dssp CCEEEEEECTTTCCEEEEE-E---ESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CcCeEEEEECCCCCEEeEe-c---CCC-CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEe
Confidence 4578999999998753321 1 111 0111112224556666654 689999999999998776443222 2245567
Q ss_pred CCCeEE
Q 013545 402 QDQELY 407 (441)
Q Consensus 402 d~~~l~ 407 (441)
||+.++
T Consensus 526 ~G~qyv 531 (599)
T 1w6s_A 526 KGTQYV 531 (599)
T ss_dssp TTEEEE
T ss_pred CCEEEE
Confidence 887543
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.44 E-value=0.057 Score=49.08 Aligned_cols=204 Identities=11% Similarity=0.072 Sum_probs=109.4
Q ss_pred EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecCCCcEEEEeecCC--cEE
Q 013545 139 VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG--AIR 216 (441)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg--~I~ 216 (441)
+..+........+++.+. ..++++...++.|..||.+.. ....+. -...+..+++.++++ ++++..... .|.
T Consensus 25 ~~~~p~~~~pegia~~~~---g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~-l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 25 ITSFPVNTFLENLASAPD---GTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGD-LVATGWNADSIPVV 98 (306)
T ss_dssp EEEECTTCCEEEEEECTT---SCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSC-EEEEEECTTSCEEE
T ss_pred eEeCCCCCCcceEEECCC---CCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCc-EEEEeccCCcceEE
Confidence 344433333445566553 235555556788999998754 332222 234578999999987 555543322 355
Q ss_pred EEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccCCCCcccccCCCcccc
Q 013545 217 FWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSS 296 (441)
Q Consensus 217 iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (441)
.+|..+++....... +
T Consensus 99 ~~d~~~g~~~~~~~~-----------------------------------------------------------~----- 114 (306)
T 2p4o_A 99 SLVKSDGTVETLLTL-----------------------------------------------------------P----- 114 (306)
T ss_dssp EEECTTSCEEEEEEC-----------------------------------------------------------T-----
T ss_pred EEcCCCCeEEEEEeC-----------------------------------------------------------C-----
Confidence 566554432111100 0
Q ss_pred cccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeee-E---E--eccCcceEEEeeCCCcEEEEeCC
Q 013545 297 QDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET-V---R--LQTSKPIQLATTQDPAVVFVPCM 370 (441)
Q Consensus 297 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~~~~~~~~~~~ 370 (441)
.......+++.+++..+++-..+++|.++|..+++........ . . .....+.-+ ++++..++++..
T Consensus 115 ------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 115 ------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp ------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred ------CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 0001123444555655666556788888887654211100000 0 0 000122223 667766666543
Q ss_pred --CceEEEEccC-Cce--EeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 371 --TAVKAFDIWS-GKT--CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 371 --~~~~~wd~~~-~~~--~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
..+..+++.. ++. ...+. .......++++++|+.+++....+.|.++++.
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 5788888764 332 11111 11346779999999888777777889999986
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.39 E-value=0.098 Score=49.71 Aligned_cols=234 Identities=8% Similarity=-0.022 Sum_probs=133.9
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC----ceeeeecCCCCCe
Q 013545 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG----AISQTLSGHRDGI 193 (441)
Q Consensus 118 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~----~~~~~l~~h~~~v 193 (441)
+|+.+ ....|+..|+.................+++.+. ...+..+-..++.|+.+++... .....+.......
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~--~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEe-ccceeEEEccCCcceeEeccccCcceEEeeeec--cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 34333 346888889877655444444445566666653 2345555556778999998752 2233333345567
Q ss_pred EEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccc
Q 013545 194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQ 273 (441)
Q Consensus 194 ~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (441)
..+++.+.+..++++-...+.|.+.|+........+
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~-------------------------------------------- 197 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-------------------------------------------- 197 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE--------------------------------------------
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE--------------------------------------------
Confidence 889998865556777666777887776532110000
Q ss_pred cCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeec-CCcEEEeeCCCCCceeeeeeeEEeccC
Q 013545 274 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGS-DSRIRLWDVESGRNTLVNFETVRLQTS 351 (441)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~-D~~i~~wd~~~~~~~~~~~~~~~~~~~ 351 (441)
.........|+++|.+.+ +.+-.. ..+|...++........ ......
T Consensus 198 ---------------------------~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~----~~~~l~ 246 (400)
T 3p5b_L 198 ---------------------------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----VTENIQ 246 (400)
T ss_dssp ---------------------------ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE----ECSSCS
T ss_pred ---------------------------eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE----EECCCC
Confidence 001123578899986544 444433 47888888875432111 011224
Q ss_pred cceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeecc--cccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCC
Q 013545 352 KPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRG--HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDG 427 (441)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~g--h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~ 427 (441)
.|.-+++.++...++++-. ..+..+|+........+.+ .......|++. .+..+++....+.|..++..++....
T Consensus 247 ~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 247 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN 325 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceE
Confidence 5677889988777777643 4678888754333222222 23345677773 34555666666788888876665544
Q ss_pred ccC
Q 013545 428 VDA 430 (441)
Q Consensus 428 ~~~ 430 (441)
.+.
T Consensus 326 ~i~ 328 (400)
T 3p5b_L 326 LLA 328 (400)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 270
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.36 E-value=0.065 Score=49.04 Aligned_cols=110 Identities=13% Similarity=0.103 Sum_probs=69.5
Q ss_pred eEEEEEcc-CCCEEEEeec-----------------CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe
Q 013545 307 VTGLKVTE-DGMYLLSAGS-----------------DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP 368 (441)
Q Consensus 307 v~~l~~s~-dg~~l~sgs~-----------------D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (441)
...+++.+ +|...++-.. ++.|..||..+++... + ......+.-+++++++..++++
T Consensus 128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~--~---~~~~~~p~gia~~~dg~~lyv~ 202 (322)
T 2fp8_A 128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL--L---LKELHVPGGAEVSADSSFVLVA 202 (322)
T ss_dssp EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE--E---EEEESCCCEEEECTTSSEEEEE
T ss_pred cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE--e---ccCCccCcceEECCCCCEEEEE
Confidence 56789999 8987776432 4678888887654211 1 1112345667889998866655
Q ss_pred CC--CceEEEEccCCc--eEeeecccccceEEEEEcCCCCeEEEeec----------CCcEEEeCCCC
Q 013545 369 CM--TAVKAFDIWSGK--TCLTFRGHYEYVNCCCFSSQDQELYTGGN----------DRQILVWCPSR 422 (441)
Q Consensus 369 ~~--~~~~~wd~~~~~--~~~~l~gh~~~v~~v~fspd~~~l~s~s~----------D~~i~vW~~~~ 422 (441)
.. ..+..+++.... ....+....+ ...+++.++|++.++... .+.|..+++..
T Consensus 203 d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G 269 (322)
T 2fp8_A 203 EFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG 269 (322)
T ss_dssp EGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS
T ss_pred eCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC
Confidence 32 578888876421 1122211223 688999999987776644 45688888753
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.23 E-value=0.033 Score=56.76 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=34.2
Q ss_pred cEEEEECCCCcee--eeecC-CCCCeEEEEEecCCCcEEEEee-cCCcEEEEEcCCC
Q 013545 171 QVRLCDIASGAIS--QTLSG-HRDGIMTVEWSTSSEWILVTGG-CDGAIRFWDIRRA 223 (441)
Q Consensus 171 ~I~vwdl~~~~~~--~~l~~-h~~~v~~v~fsp~~~~~l~s~s-~Dg~I~iWD~~~~ 223 (441)
.+.+||+.+++-. ..+.. +.....++++.++++ +++.|+ .++.+.+||..+.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~~yd~~t~ 275 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSD 275 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGT
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceEEecCcCC
Confidence 5889999888632 22222 233334577778876 677777 4568999998754
No 272
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.23 E-value=0.26 Score=51.21 Aligned_cols=287 Identities=10% Similarity=0.036 Sum_probs=151.6
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEEe
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS 123 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sgs 123 (441)
..|.+|..++ ++.+.+ |..+ .+.+||..+..... .... ......-....|.++...+ ++ .|..|.
T Consensus 211 ~~i~~i~~d~-~g~lwi-gt~~-Gl~~~d~~~~~~~~----~~~~------~~~~~~l~~~~i~~i~~d~-~g-~lWigt 275 (781)
T 3v9f_A 211 NDVRCIYKDT-NGNIWI-GTSK-GLALFNANTETFTN----FHNN------PGNIHGALSSYIFSIKQLK-DN-KLWIAT 275 (781)
T ss_dssp SSEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEEC---------------------CCCCEEEEEECT-TS-EEEEEE
T ss_pred CceeEEEEcC-CCCEEE-EeCC-cHheECCCCCcEEE----EEcC------CCccccccCceEEEEEECC-CC-CEEEEe
Confidence 4688888874 455443 4444 68899976543110 0000 0000001123466665543 34 566666
Q ss_pred CCCcEEEEECCCCeEEEEEe--------------c-CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-
Q 013545 124 YDHYVKVWDTNCTRVVMNFK--------------M-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS- 187 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~- 187 (441)
..+-|.++|..++....... + ...+.++.... .+ .|-.|+.++-|.+++..++.......
T Consensus 276 ~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~ 351 (781)
T 3v9f_A 276 ELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FN--NIWIGTWGGGINFISNAPPTFHTWSYS 351 (781)
T ss_dssp SSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SC--CEEEEEBSSCEEEECSSCCSCEEEC--
T ss_pred CCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CC--CEEEEecCCeEEEeCCCCCcceeeccC
Confidence 65678889987665422111 1 12244333332 22 35556666779999987765332210
Q ss_pred --------CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545 188 --------GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259 (441)
Q Consensus 188 --------~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (441)
-....|.++...+++. |..|+.++-|..||..++.. ..+. .
T Consensus 352 ~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~-~~~~---~------------------------- 400 (781)
T 3v9f_A 352 PTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVA-IYNK---E------------------------- 400 (781)
T ss_dssp --CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEE-ECC------------------------------
T ss_pred ccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeE-EEcc---C-------------------------
Confidence 1235688998888775 34566677799998754211 0000 0
Q ss_pred CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCce
Q 013545 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT 339 (441)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~ 339 (441)
+ .......|.++...++|...+ |+.++-|..+|..+++..
T Consensus 401 -------------------------------~--------~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 401 -------------------------------N--------RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp ------------------------------------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred -------------------------------C--------CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence 0 000124588888888887665 666667899988765421
Q ss_pred eeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeeccc-----ccceEEEEEcCCCCeEEEeecCCc
Q 013545 340 LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGH-----YEYVNCCCFSSQDQELYTGGNDRQ 414 (441)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~gh-----~~~v~~v~fspd~~~l~s~s~D~~ 414 (441)
.+.........+..+...+++.+.+.. ...+..++..+++........ ...|.+++..++|+..+.. .++-
T Consensus 441 --~~~~~~~~~~~v~~i~~d~~g~lwigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~G 516 (781)
T 3v9f_A 441 --IIELEKNELLDVRVFYEDKNKKIWIGT-HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGG 516 (781)
T ss_dssp --ECCSTTTCCCCEEEEEECTTSEEEEEE-TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSC
T ss_pred --EeccCCCCCCeEEEEEECCCCCEEEEE-CCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCC
Confidence 111000011223334444555554443 477888888766543222111 3579999999988776644 3333
Q ss_pred EEEeCCCCCC
Q 013545 415 ILVWCPSRHI 424 (441)
Q Consensus 415 i~vW~~~~~~ 424 (441)
+..+++.+++
T Consensus 517 l~~~~~~~~~ 526 (781)
T 3v9f_A 517 VGIYTPDMQL 526 (781)
T ss_dssp EEEECTTCCE
T ss_pred EEEEeCCCCe
Confidence 6678876554
No 273
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.22 E-value=0.18 Score=49.07 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=64.8
Q ss_pred eEEEEeeC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC----eeEEEee-------ccCCCCccEEEEEeCCC----
Q 013545 107 SSAIWYPV-DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG----KVYRTAM-------SPLAASHMLIAAGTEDV---- 170 (441)
Q Consensus 107 ~~~~~~~~-~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~las~s~d~---- 170 (441)
..+++.|. ++.++++-...+.|++.|++++.+........ ....+++ .+.. ..++++...++
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G--~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA--EYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT--CEEEEEECCCTTGGG
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC--CEEEEEeCCCCCccc
Confidence 35666653 34445554445789999998887765544321 2456666 5543 33455444332
Q ss_pred --cEEEEECCC-Ccee-----eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 171 --QVRLCDIAS-GAIS-----QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 171 --~I~vwdl~~-~~~~-----~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
.|.+.+... +... +.+... .....++++|++..++++-..++.|..+|+.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 266776444 2322 222211 2335778899766677777778889988875
No 274
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.21 E-value=0.27 Score=50.99 Aligned_cols=223 Identities=8% Similarity=-0.024 Sum_probs=124.6
Q ss_pred CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC----ceeeeecCCCCCeEEEEEe
Q 013545 124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG----AISQTLSGHRDGIMTVEWS 199 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~----~~~~~l~~h~~~v~~v~fs 199 (441)
....|+..++.................+++.+. ...++.+-...+.|+.+++... .....+.........|++.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~--~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeeccc--CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 446788888876554443333334455555543 2345555566778998998753 2233344345566789998
Q ss_pred cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI 279 (441)
Q Consensus 200 p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (441)
+.++.++++-...+.|.+.++.... ..++-
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~------------------------------------------------- 509 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVK-RKTLF------------------------------------------------- 509 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSS-EEEEE-------------------------------------------------
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCe-EEEEE-------------------------------------------------
Confidence 8877677777777888888875321 11100
Q ss_pred cCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecC-CcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545 280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLA 357 (441)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (441)
........+|+++|.+ .++++-... .+|...++....... + .......|.-++
T Consensus 510 ---------------------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~--l--v~~~l~~P~GLa 564 (791)
T 3m0c_C 510 ---------------------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--L--VTENIQWPNGIT 564 (791)
T ss_dssp ---------------------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--E--ECSSCSCEEEEE
T ss_pred ---------------------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--E--EeCCCCCceEEE
Confidence 0011236789999874 444554333 788888887543211 1 111224577788
Q ss_pred eeCCCcEEEEeCC--CceEEEEccCCceEeeeccc--ccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 358 TTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGH--YEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 358 ~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh--~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
+.+....++++-. ..|..+++........+.++ -.....|++..+ +.+++-...+.|..-+..++.
T Consensus 565 vD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 565 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCC
T ss_pred EecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCc
Confidence 8877777777633 46777777544333333322 223456666432 344454445667666655554
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.20 E-value=0.11 Score=47.65 Aligned_cols=214 Identities=9% Similarity=0.020 Sum_probs=116.8
Q ss_pred eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeE---EEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce
Q 013545 106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV---VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182 (441)
Q Consensus 106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~ 182 (441)
+..+.|.+.++.++.+-...+.|..+++..... +....+ .....+++.+. ...+..+-...+.|.+++++....
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l-~~p~glavd~~--~g~ly~~d~~~~~I~~~~~dG~~~ 113 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL-LSPDGLACDWL--GEKLYWTDSETNRIEVSNLDGSLR 113 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC-SCCCEEEEETT--TTEEEEEETTTTEEEEEETTSCSC
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC-CCccEEEEEcC--CCeEEEEECCCCEEEEEECCCCcE
Confidence 445677765566667767778899998876531 111111 12233444432 334555555677899999875543
Q ss_pred eeeecCCCCCeEEEEEecCCCcEEEEee-cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCC
Q 013545 183 SQTLSGHRDGIMTVEWSTSSEWILVTGG-CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAP 261 (441)
Q Consensus 183 ~~~l~~h~~~v~~v~fsp~~~~~l~s~s-~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (441)
...+.........+++.|.+..++++-. ..+.|...++.... ...+
T Consensus 114 ~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~-------------------------------- 160 (318)
T 3sov_A 114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFII-------------------------------- 160 (318)
T ss_dssp EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEE--------------------------------
T ss_pred EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEE--------------------------------
Confidence 3333344566789999987665655532 24556666543110 0000
Q ss_pred CcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCcee
Q 013545 262 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTL 340 (441)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~ 340 (441)
. .......+.|+++|++. ..++-+..++|..+|+.......
T Consensus 161 ---------------------------~-----------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~ 202 (318)
T 3sov_A 161 ---------------------------I-----------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA 202 (318)
T ss_dssp ---------------------------E-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ---------------------------E-----------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEE
Confidence 0 00012357899998655 45566677889999987533211
Q ss_pred eeeeeEEeccCcceEEEeeCCCcEEEEe--CCCceEEEEccCCceEeeecccccceEEEEE
Q 013545 341 VNFETVRLQTSKPIQLATTQDPAVVFVP--CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF 399 (441)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f 399 (441)
+. ......|..+++.. ..+++. ....+..++..+|+...++........+|++
T Consensus 203 --~~--~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v 257 (318)
T 3sov_A 203 --VV--KGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 257 (318)
T ss_dssp --EE--CSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEE
T ss_pred --Ee--cCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEE
Confidence 11 11123455555543 334443 3357888888888766555433233334443
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.20 E-value=0.13 Score=47.12 Aligned_cols=227 Identities=7% Similarity=-0.014 Sum_probs=126.9
Q ss_pred CCcEEEEECCCCe--EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCcee-eeecCCCCCeEEEEEecC
Q 013545 125 DHYVKVWDTNCTR--VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-QTLSGHRDGIMTVEWSTS 201 (441)
Q Consensus 125 D~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~-~~l~~h~~~v~~v~fsp~ 201 (441)
...|+..|+.... .............+.+.+. ...+..+-..++.|..++++.+... ..+.........+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~--~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS--HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGG--GTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeC--CCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 4578888887653 1111111112334445442 2345556566778999998776422 222223345568888876
Q ss_pred CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
+..++++-...+.|.++++.... ...+-
T Consensus 90 ~g~ly~~d~~~~~I~~~~~dG~~-~~~l~--------------------------------------------------- 117 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLDGSL-RKVLF--------------------------------------------------- 117 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCS-CEEEE---------------------------------------------------
T ss_pred CCeEEEEECCCCEEEEEECCCCc-EEEEE---------------------------------------------------
Confidence 66666776667788888865211 00000
Q ss_pred CCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEe-ecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSA-GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359 (441)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sg-s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (441)
.........|++.|.+.+ +.+- +...+|...++....... + .......|.-+++.
T Consensus 118 -------------------~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~--~~~~l~~Pnglavd 174 (318)
T 3sov_A 118 -------------------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--I--INSEIYWPNGLTLD 174 (318)
T ss_dssp -------------------CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE--E--ECSSCSCEEEEEEE
T ss_pred -------------------eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE--E--EECCCCCccEEEEe
Confidence 000123568889886544 4443 235778888876432211 1 01112456778899
Q ss_pred CCCcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545 360 QDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 360 ~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~ 429 (441)
++...++.+-. ..+..+++........+.+.......+++.. +..+++-...+.|...++.++.....+
T Consensus 175 ~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 175 YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred ccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 87777666533 5677888754332222333445567788753 455666656678888888776654443
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.18 E-value=0.15 Score=47.40 Aligned_cols=215 Identities=10% Similarity=0.048 Sum_probs=120.0
Q ss_pred eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545 106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184 (441)
Q Consensus 106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~ 184 (441)
+..+.+.+.++.++.+-...+.|..+++............ .....+++.+. +..+..+-...+.|.+.+++......
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~--~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV--HDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecC--CCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 4567777655656666667788999998765533322211 12234444432 33455555667789999987654433
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEeecC-CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545 185 TLSGHRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK 263 (441)
Q Consensus 185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (441)
.+.........+++.|.+..++++-... +.|...++.... ...+
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~---------------------------------- 197 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRII---------------------------------- 197 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEES----------------------------------
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEE----------------------------------
Confidence 3444456678999999776666665444 666666654210 0000
Q ss_pred ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCceeee
Q 013545 264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVN 342 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~~~~ 342 (441)
........+.|+++|++. ..++-+..++|..+|+........
T Consensus 198 ------------------------------------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~- 240 (349)
T 3v64_C 198 ------------------------------------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV- 240 (349)
T ss_dssp ------------------------------------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-
T ss_pred ------------------------------------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE-
Confidence 000012367899998655 455666778899999875432111
Q ss_pred eeeEEeccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCceEeeecccccceEEEEE
Q 013545 343 FETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCF 399 (441)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f 399 (441)
. ......|..+++. ++ .++++. ...+..++..+|+...++.........+++
T Consensus 241 ~---~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 241 I---SQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp E---CSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred E---eCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 1 1112345555552 33 444432 356777776677766655433333344443
No 278
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.96 E-value=0.47 Score=49.28 Aligned_cols=292 Identities=9% Similarity=-0.009 Sum_probs=158.8
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceecc-ceeEEeecccccCcccceeEEEEeeCCCCEEEEE
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKH-RSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg 122 (441)
..|++|..+. ++ .|.-|...+.|.++|..+..... .... -..+........-....|.++...+ ++ .|-.|
T Consensus 258 ~~i~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~~----~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g-~lWig 329 (781)
T 3v9f_A 258 SYIFSIKQLK-DN-KLWIATELNGIMILDLQQNQFLL----PEQIRFEFIREGDNNYSLSNASARYIFQDS-FN-NIWIG 329 (781)
T ss_dssp CCEEEEEECT-TS-EEEEEESSSCEEEEETTCC-------------CEEECBCSSTTSBSSSCEEEEEECS-SC-CEEEE
T ss_pred ceEEEEEECC-CC-CEEEEeCCCCeEEECCCCCeeee----eeccccccccCCCCCCCCCCCeEEEEEEeC-CC-CEEEE
Confidence 5688888863 45 46566666778889976543210 0000 0000000000111334566665544 34 56667
Q ss_pred eCCCcEEEEECCCCeEEEEEec-----------CCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee---cC
Q 013545 123 SYDHYVKVWDTNCTRVVMNFKM-----------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL---SG 188 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l---~~ 188 (441)
..++-|..++........ +.. ...+.++.... .+ .|-.|+.++-+.++|..++...... ..
T Consensus 330 t~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~--~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~ 404 (781)
T 3v9f_A 330 TWGGGINFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDG--QG--KLWIGTDGGGINVFENGKRVAIYNKENREL 404 (781)
T ss_dssp EBSSCEEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECT--TS--CEEEEEBSSCEEEEETTEEEEECC-----C
T ss_pred ecCCeEEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcC--CC--CEEEEeCCCcEEEEECCCCeEEEccCCCCC
Confidence 777788899887654322 211 12344444332 22 2445665666999998765433211 12
Q ss_pred CCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCC
Q 013545 189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANG 268 (441)
Q Consensus 189 h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (441)
....|.++...+++. + ..|+.++.+..+|.++++.. .+..
T Consensus 405 ~~~~v~~i~~d~~g~-l-Wigt~~~Gl~~~~~~~~~~~-~~~~------------------------------------- 444 (781)
T 3v9f_A 405 LSNSVLCSLKDSEGN-L-WFGTYLGNISYYNTRLKKFQ-IIEL------------------------------------- 444 (781)
T ss_dssp CCSBEEEEEECTTSC-E-EEEETTEEEEEECSSSCEEE-ECCS-------------------------------------
T ss_pred CCcceEEEEECCCCC-E-EEEeccCCEEEEcCCCCcEE-Eecc-------------------------------------
Confidence 346688888887775 4 34666677888887654211 0000
Q ss_pred CCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEE-
Q 013545 269 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR- 347 (441)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~- 347 (441)
. ......|.++...++|...+ |+. +-|..+|..+++... +....
T Consensus 445 ----------------------~---------~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~--~~~~~~ 489 (781)
T 3v9f_A 445 ----------------------E---------KNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIH--HYDTSN 489 (781)
T ss_dssp ----------------------T---------TTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCE--EECTTT
T ss_pred ----------------------C---------CCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEe--cccCcc
Confidence 0 00123578888888887655 444 458899988754321 11000
Q ss_pred --eccCcceEEEeeCCCcEEEEeCCCceEEEEccCCceEeeecc----cccceEEEEEcCCCCeEEEeecCCcEEEeCCC
Q 013545 348 --LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG----HYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 421 (441)
Q Consensus 348 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~l~g----h~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~ 421 (441)
.....+..+....++.+.+......+..++..+++. ..+.. ....|.++...++|...++.. +|.|..|++.
T Consensus 490 ~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~ 567 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSAR 567 (781)
T ss_dssp SSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTT
T ss_pred cccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCC
Confidence 001223445556667766555446777788765543 22221 134689999999988766544 6665889887
Q ss_pred CCCC
Q 013545 422 RHIS 425 (441)
Q Consensus 422 ~~~~ 425 (441)
+++.
T Consensus 568 ~~~~ 571 (781)
T 3v9f_A 568 NFDY 571 (781)
T ss_dssp TCCC
T ss_pred CCcE
Confidence 7653
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.90 E-value=0.25 Score=45.13 Aligned_cols=208 Identities=10% Similarity=-0.015 Sum_probs=112.4
Q ss_pred eeEEEEeeCCCCEEEEEeCCCcEEEEECCC----CeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545 106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNC----TRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180 (441)
Q Consensus 106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~ 180 (441)
+..+.+.+.++.++.+-...+.|..+++.. ......+... .....+++.+. +..+..+-..++.|.+.+++..
T Consensus 32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~--~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI--HSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT--TTEEEEEETTTTEEEEEETTSS
T ss_pred eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec--CCeEEEEECCCCEEEEEeCCCC
Confidence 445677664555666767778999999875 1212112111 12334454432 2345555566788999998755
Q ss_pred ceeeeecCCCCCeEEEEEecCCCcEEEEeecC-CcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCC
Q 013545 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPR 259 (441)
Q Consensus 181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (441)
.....+.........+++.|.+..++++.... +.|...++.. .....+-
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~----------------------------- 159 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV----------------------------- 159 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEE-----------------------------
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEE-----------------------------
Confidence 43333333445678999999776666664333 5666666531 1000000
Q ss_pred CCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCCCCc
Q 013545 260 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRN 338 (441)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~~~~ 338 (441)
.......+.|+++|++..| ++-+..++|..+|+.....
T Consensus 160 -----------------------------------------~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~ 198 (316)
T 1ijq_A 160 -----------------------------------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 198 (316)
T ss_dssp -----------------------------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred -----------------------------------------ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce
Confidence 0001236789999876554 5556677999999875332
Q ss_pred eeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCceEeeeccc
Q 013545 339 TLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGH 390 (441)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh 390 (441)
.. +.........|..+++. . ..+++... ..+..++..+|+....+...
T Consensus 199 ~~--~~~~~~~~~~P~giav~-~-~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~ 248 (316)
T 1ijq_A 199 KT--ILEDEKRLAHPFSLAVF-E-DKVFWTDIINEAIFSANRLTGSDVNLLAEN 248 (316)
T ss_dssp EE--EEECTTTTSSEEEEEEE-T-TEEEEEETTTTEEEEEETTTCCCCEEEECS
T ss_pred EE--EeecCCccCCcEEEEEE-C-CEEEEEECCCCeEEEEeCCCCcceEEEecC
Confidence 11 11100012334555553 3 34444433 56777787777766655443
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.88 E-value=0.53 Score=48.81 Aligned_cols=114 Identities=4% Similarity=-0.111 Sum_probs=66.9
Q ss_pred eeEEEEeeCCCCEEEEEeCCCcEEEEECCCC----eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCC
Q 013545 106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT----RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180 (441)
Q Consensus 106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~ 180 (441)
+..+.+.+.++.++++-...+.|+.+++... .....+. .......+++.+. +..+..+-...+.|.+.++...
T Consensus 426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~--~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI--HSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT--TTEEEEEETTTTEEEEEETTSS
T ss_pred eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec--CCcEEEEecCCCeEEEEeCCCC
Confidence 4466776655556667667788888888642 1122222 1122334555443 3346666667789999999765
Q ss_pred ceeeeecCCCCCeEEEEEecCCCcEEEEeecC-CcEEEEEcC
Q 013545 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIR 221 (441)
Q Consensus 181 ~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~ 221 (441)
.....+.........|++.|.+.+++++-..+ +.|...++.
T Consensus 504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d 545 (791)
T 3m0c_C 504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 545 (791)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence 54334444555688999999866666664222 566666654
No 281
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.85 E-value=0.49 Score=47.78 Aligned_cols=223 Identities=7% Similarity=-0.008 Sum_probs=132.1
Q ss_pred CCCcEEEEECCCCeEEEEEecCC--eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545 124 YDHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS 201 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~ 201 (441)
....|+.-|+.+..........+ ....+.+.+. ...+..+-..++.|+.+++........+.........+++.+.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~--~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~ 90 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVT--DNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWL 90 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECC--CCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeC
Confidence 45678888887655433333332 3455666653 3345666666788999998765443334333345678888877
Q ss_pred CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
+..++++-...+.|.+.++..... .++-
T Consensus 91 ~~~LY~tD~~~~~I~v~~~dG~~~-~~l~--------------------------------------------------- 118 (628)
T 4a0p_A 91 GKNLYWADTGTNRIEVSKLDGQHR-QVLV--------------------------------------------------- 118 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSTTC-EEEE---------------------------------------------------
T ss_pred CCEEEEEECCCCEEEEEecCCCcE-EEEE---------------------------------------------------
Confidence 666777766667777777642110 0000
Q ss_pred CCCcccccCCCcccccccceeeccCeEEEEEccC-CCEEEEe-ecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSA-GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359 (441)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sg-s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (441)
........+|++.|. |..+.|- +...+|...++....... +......|.-+++.
T Consensus 119 -------------------~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~-----l~~~~~~P~GlalD 174 (628)
T 4a0p_A 119 -------------------WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT-----LVPNVGRANGLTID 174 (628)
T ss_dssp -------------------CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-----EECSCSSEEEEEEE
T ss_pred -------------------eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE-----EECCCCCcceEEEc
Confidence 000123578999985 5555554 235678888877543221 11123457778888
Q ss_pred CCCcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCC
Q 013545 360 QDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD 426 (441)
Q Consensus 360 ~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~ 426 (441)
++...++++-. ..+..+++..... ..+.........+++.. +..++|-...+.|...+..++...
T Consensus 175 ~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 175 YAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred cccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence 88777777643 4677788754433 44444445567888865 455556555778888887666533
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.84 E-value=0.024 Score=58.85 Aligned_cols=113 Identities=8% Similarity=0.041 Sum_probs=65.1
Q ss_pred EEEEEccCCCEEEEeecC-----CcEEEeeCCCCCce-eeeeeeEEeccCcceEEEeeCCCcEEEEeC----CCceEEEE
Q 013545 308 TGLKVTEDGMYLLSAGSD-----SRIRLWDVESGRNT-LVNFETVRLQTSKPIQLATTQDPAVVFVPC----MTAVKAFD 377 (441)
Q Consensus 308 ~~l~~s~dg~~l~sgs~D-----~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~wd 377 (441)
.+++|+|||+.|+-...| ..|.++++.++... ...+.. ..........+++|+..++... ...+.++|
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d 301 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE--HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLD 301 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC--CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEec--CCCceEEEEEECCCCCEEEEEecCCCCceEEEEE
Confidence 356899999988877665 25888888775421 111111 0112234567899998776643 23577788
Q ss_pred ccCCc--e--EeeecccccceEEEEEcCCCCeEEEeecC--C--cEEEeCCCC
Q 013545 378 IWSGK--T--CLTFRGHYEYVNCCCFSSQDQELYTGGND--R--QILVWCPSR 422 (441)
Q Consensus 378 ~~~~~--~--~~~l~gh~~~v~~v~fspd~~~l~s~s~D--~--~i~vW~~~~ 422 (441)
+.++. . .....+..+....+.|+.++.+++....| + .|.++++.+
T Consensus 302 ~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 302 LRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp SSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 87652 3 23334445566666666555555555444 3 355555543
No 283
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.80 E-value=0.0039 Score=64.12 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=52.9
Q ss_pred eEEEEEccCC-CEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEccCCce
Q 013545 307 VTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKT 383 (441)
Q Consensus 307 v~~l~~s~dg-~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~~~~~ 383 (441)
.+.|+|+|++ .++++-+..++|..+++....... +.........+..+++..+ .+++... ..|..++..+|+.
T Consensus 542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~--~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT--ILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEE--ECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEE
T ss_pred ccEEEEeccCCEEEEEecCCCeEEEEccCCCceEE--EEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCc
Confidence 4578999874 555666777889999987533211 1110011123344444433 4555433 5788888888888
Q ss_pred EeeecccccceEEEEEcCC
Q 013545 384 CLTFRGHYEYVNCCCFSSQ 402 (441)
Q Consensus 384 ~~~l~gh~~~v~~v~fspd 402 (441)
+.++.......+.|++.++
T Consensus 618 ~~~i~~~~~~P~~i~v~~~ 636 (699)
T 1n7d_A 618 VNLLAENLLSPEDMVLFHQ 636 (699)
T ss_dssp EECCCTTCSSCCCCCBCSS
T ss_pred eEEeecCCCCCcEEEEeCc
Confidence 7777554444556655543
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.77 E-value=0.008 Score=61.82 Aligned_cols=223 Identities=7% Similarity=-0.035 Sum_probs=114.0
Q ss_pred CCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC----CceeeeecCCCCCeEEEEEe
Q 013545 124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS----GAISQTLSGHRDGIMTVEWS 199 (441)
Q Consensus 124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~----~~~~~~l~~h~~~v~~v~fs 199 (441)
..+.|+..++.................+++.+. ...+..+-...+.|+.+++.+ ......+.........|++.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~--~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTCCCCEEETT--TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred CccceEEEeCCCCcceeeeccCcceEEEccccc--cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 345788888776654433322223334455442 233444445567899999875 22222222222334567777
Q ss_pred cCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccc
Q 013545 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI 279 (441)
Q Consensus 200 p~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (441)
+.+..++++-...+.|.+.|+.......++.
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~------------------------------------------------- 492 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFR------------------------------------------------- 492 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECC-------------------------------------------------
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEe-------------------------------------------------
Confidence 6555566665566778888765321100000
Q ss_pred cCCCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEeecC-CcEEEeeCCCCCceeeeeeeEEeccCcceEEE
Q 013545 280 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLA 357 (441)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (441)
........|+++|.+ .++++-... ++|...++....... +. ......|.-++
T Consensus 493 ----------------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~--~~~l~~PnGla 546 (699)
T 1n7d_A 493 ----------------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV--TENIQWPNGIT 546 (699)
T ss_dssp ----------------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ES--CSSCSSCCCEE
T ss_pred ----------------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EE--eCCCCCccEEE
Confidence 000113456777754 344444333 678887775432111 00 01123466688
Q ss_pred eeCCCcEEEEeCC--CceEEEEccCCceEeeec--ccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 358 TTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFR--GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 358 ~~~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~--gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
+.+++..++++-. ..|..+++........+. +.......|++..+ ..+++....+.|...+..++.
T Consensus 547 vd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 547 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp ECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred EeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 8887666666533 467777775332222222 12233455666544 455566666788888876554
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.75 E-value=0.4 Score=45.44 Aligned_cols=218 Identities=9% Similarity=-0.020 Sum_probs=119.9
Q ss_pred ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCC----eEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC
Q 013545 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT----RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS 179 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~ 179 (441)
.+..+.+.+.++.++.+-...+.|..+++... .....+. .......+++.+. ...+..+-...+.|.+.+++.
T Consensus 113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~--~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI--HSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT--TTEEEEEETTTTEEEEECTTT
T ss_pred cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec--CCceEEEECCCCeEEEEeCCC
Confidence 35567777655656666666788988888642 1222221 1122344555442 334555666678899999976
Q ss_pred CceeeeecCCCCCeEEEEEecCCCcEEEEeec-CCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCC
Q 013545 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKP 258 (441)
Q Consensus 180 ~~~~~~l~~h~~~v~~v~fsp~~~~~l~s~s~-Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (441)
......+.........|++.|.+..++++-.. .+.|...++........+
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~----------------------------- 241 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV----------------------------- 241 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE-----------------------------
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE-----------------------------
Confidence 65444444445567899999976666665322 356666665421000000
Q ss_pred CCCCcccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEE-EEeecCCcEEEeeCCCCC
Q 013545 259 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGR 337 (441)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~~wd~~~~~ 337 (441)
.......+.|++++++..| ++-+...+|...|+....
T Consensus 242 ------------------------------------------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 242 ------------------------------------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp ------------------------------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred ------------------------------------------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence 0001236789999876554 555667889999987543
Q ss_pred ceeeeeeeEEeccCcceEEEeeCCCcEEEEe--CCCceEEEEccCCceEeeecccccceEEEEE
Q 013545 338 NTLVNFETVRLQTSKPIQLATTQDPAVVFVP--CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF 399 (441)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~wd~~~~~~~~~l~gh~~~v~~v~f 399 (441)
... +.........+..+++. ...+++. ....|..++..+|+...++.........+++
T Consensus 280 ~~~--~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 280 RKT--ILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp CEE--EEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred cEE--EEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 221 11100112344555553 3344443 2356788887788776666544444455544
No 286
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.72 E-value=0.19 Score=52.11 Aligned_cols=148 Identities=10% Similarity=0.048 Sum_probs=81.2
Q ss_pred CCCC-ceeEEEcc-CCCCcEEE-EeeCC----CcEEEEECCCC-cccCCCCceeccceeEEeecccccCcccceeEEEEe
Q 013545 41 PHKG-SINSLQVD-LTEERYLL-SGASD----SSVAVYDVQRA-TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWY 112 (441)
Q Consensus 41 ~H~~-~V~~l~~s-~~~~~~l~-s~s~D----g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~ 112 (441)
+|.- .+...+|| |+ +++|| +.+.+ .+|+++|+.++ +.... .+ ......+.|+
T Consensus 170 ~~~~~~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~-----------------~~~~~~~~Ws 229 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KV-----------------SGTNGEIVWG 229 (751)
T ss_dssp TCSCCEEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CE-----------------EEECSCCEEC
T ss_pred CCCeEEEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cc-----------------cCceeeEEEe
Confidence 3443 67889999 75 66665 33333 35999999876 42110 00 0012245677
Q ss_pred eCCCCEEEEEeCC-----CcEEEEECCCCeE--EEEEec--CCeeEEEeeccCCCCccEEEEEe--CCCcEEEEECCCCc
Q 013545 113 PVDTGLFVTGSYD-----HYVKVWDTNCTRV--VMNFKM--PGKVYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGA 181 (441)
Q Consensus 113 ~~~~~~l~sgs~D-----~~i~iWd~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~las~s--~d~~I~vwdl~~~~ 181 (441)
| |++.|+....| ..|.++++.++.. ...+.. ........+++++. .++.+.. ....|.++|+.++.
T Consensus 230 p-Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~l~~~d~~~~~ 306 (751)
T 2xe4_A 230 P-DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTN--TLCIGSQSPETAEVHLLDLRKGN 306 (751)
T ss_dssp S-STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSS--EEEEEEECSSCEEEEEEESSSCT
T ss_pred c-CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCC--EEEEEecCCCCceEEEEECCCCC
Confidence 6 67777666655 3578888877541 222222 22344566777643 3333332 34578899998762
Q ss_pred --e--eeeecCCCCCeEEEEEecCCCcEEEEeecC
Q 013545 182 --I--SQTLSGHRDGIMTVEWSTSSEWILVTGGCD 212 (441)
Q Consensus 182 --~--~~~l~~h~~~v~~v~fsp~~~~~l~s~s~D 212 (441)
. .....+..+...++.|+. ++.+++....+
T Consensus 307 ~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~ 340 (751)
T 2xe4_A 307 AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEG 340 (751)
T ss_dssp TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTT
T ss_pred CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCC
Confidence 3 223334445556666654 45555555444
No 287
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.60 E-value=0.44 Score=43.93 Aligned_cols=113 Identities=10% Similarity=0.237 Sum_probs=65.8
Q ss_pred eEEEEE--ccC-CC-EEEEeecCCcEEEeeCCC---CCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEcc
Q 013545 307 VTGLKV--TED-GM-YLLSAGSDSRIRLWDVES---GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW 379 (441)
Q Consensus 307 v~~l~~--s~d-g~-~l~sgs~D~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~ 379 (441)
+..+|+ +|. +. ++.....++++..|++.. ++........+.+ .+.+--++..+....++++-.. +.+|.+.
T Consensus 130 pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd-~GIw~~d 207 (355)
T 3amr_A 130 VYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEED-EAIWKFS 207 (355)
T ss_dssp CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETT-TEEEEEE
T ss_pred eeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEeccc-ceEEEEe
Confidence 455677 674 43 677788889999998843 3222222222222 2344456666666777776543 3355543
Q ss_pred -------CCceEeeec-ccc-cceEEEEE--cCCCC-eEEEee-cCCcEEEeCCC
Q 013545 380 -------SGKTCLTFR-GHY-EYVNCCCF--SSQDQ-ELYTGG-NDRQILVWCPS 421 (441)
Q Consensus 380 -------~~~~~~~l~-gh~-~~v~~v~f--spd~~-~l~s~s-~D~~i~vW~~~ 421 (441)
+++.+..+. +|- ..+..|++ .++++ +|+..+ .+.+..||+..
T Consensus 208 a~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 208 AEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 233444432 333 36888888 56666 555444 57789999986
No 288
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.60 E-value=0.41 Score=43.57 Aligned_cols=238 Identities=13% Similarity=0.203 Sum_probs=129.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-CceeeeecCC----
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGH---- 189 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~l~~h---- 189 (441)
..+.+|--+ ..+++++|+++.+.+..+.++..+.-=.|.. . ..|+-.+ +..|.-|+++. ..+.+.+.-|
T Consensus 77 ~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis--~--~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~ 150 (365)
T 2xzh_A 77 ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--L--NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 150 (365)
T ss_dssp SSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECS--S--SEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGT
T ss_pred CccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecC--C--CeEEEEc-CCcEEEEcccCCCCCceeeecchhcc
Confidence 455665444 5789999999999999998876654222222 1 2333333 35799999975 3455555544
Q ss_pred CCCeEEEEEecCCCcEEEEee------cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545 190 RDGIMTVEWSTSSEWILVTGG------CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK 263 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s------~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (441)
...|..-..+++.+|+++.|= -.|.+++|..+.. .-+.++.+...+..
T Consensus 151 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~------------------------- 204 (365)
T 2xzh_A 151 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQ------------------------- 204 (365)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEE-------------------------
T ss_pred cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEE-------------------------
Confidence 345777777888898777664 2467788877643 11222221111000
Q ss_pred ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC---Ccee
Q 013545 264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG---RNTL 340 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~---~~~~ 340 (441)
+ ++ ++ ..+...+. +|...+. ..+.+++-++... ...+
T Consensus 205 ---------------~--------~~-~g--------~~~~~~lf--~fa~r~~------~g~kLhIiEi~~~~~~~~~f 244 (365)
T 2xzh_A 205 ---------------F--------KM-EG--------NAEESTLF--CFAVRGQ------AGGKLHIIEVGTPPTGNQPF 244 (365)
T ss_dssp ---------------E--------CC-TT--------CSSCEEEE--EEEEEET------TEEEEEEEECSSCCTTCCCC
T ss_pred ---------------E--------ec-CC--------CCCCceEE--EEEEecC------CCcEEEEEEcCCCCCCCCCc
Confidence 0 00 00 00111122 2222111 1247888887543 1111
Q ss_pred eeeeeEE------eccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545 341 VNFETVR------LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR 413 (441)
Q Consensus 341 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~ 413 (441)
. ..... ...+-|+.+..++.-..++..+- +-+.++|+.++.++..-+=-.+.|..-+-.....-++.....|
T Consensus 245 ~-kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~G 323 (365)
T 2xzh_A 245 P-KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 323 (365)
T ss_dssp C-CEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTC
T ss_pred c-cccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCC
Confidence 0 11111 12345777888888788777655 7899999999998765443344555545444433444444555
Q ss_pred cEEEeCCCCCCC
Q 013545 414 QILVWCPSRHIS 425 (441)
Q Consensus 414 ~i~vW~~~~~~~ 425 (441)
.|.-=.++....
T Consensus 324 qVl~v~v~~~~i 335 (365)
T 2xzh_A 324 QVLSVCVEEENI 335 (365)
T ss_dssp EEEEEEECTTTH
T ss_pred EEEEEEECcccE
Confidence 554444444433
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.06 E-value=0.36 Score=46.28 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=63.0
Q ss_pred CeEEEEEccCCCEE-EEeecCC----cEEEeeCCCCCceeeeeeeEEeccCcceEEEeeC-CCcEEEEe-CCCceEEEEc
Q 013545 306 AVTGLKVTEDGMYL-LSAGSDS----RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ-DPAVVFVP-CMTAVKAFDI 378 (441)
Q Consensus 306 ~v~~l~~s~dg~~l-~sgs~D~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~wd~ 378 (441)
....|+|+++|++| ++...++ .+.+.+.. +..... ..+. ....+..+++.+ ++.+.++. ....+..++.
T Consensus 180 ~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~--~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~ 255 (430)
T 3tc9_A 180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVI--TELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDF 255 (430)
T ss_dssp CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSE--EEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeee--eeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence 36789999999944 4443322 23334432 221100 0111 234566677888 55554443 3357888887
Q ss_pred cCCceEeeec-ccccceEEEEEcCCCCeEE-EeecCCcEEEeCCC
Q 013545 379 WSGKTCLTFR-GHYEYVNCCCFSSQDQELY-TGGNDRQILVWCPS 421 (441)
Q Consensus 379 ~~~~~~~~l~-gh~~~v~~v~fspd~~~l~-s~s~D~~i~vW~~~ 421 (441)
..+.....+. +....-..++|+|+|++|+ +-.....|..++.+
T Consensus 256 ~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 256 TTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 7655422111 1123468899999999544 55556788887765
No 290
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.79 E-value=1.4 Score=41.87 Aligned_cols=235 Identities=14% Similarity=0.206 Sum_probs=128.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-CceeeeecCC----
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGH---- 189 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~l~~h---- 189 (441)
..+.+|--+ ..++.|+|+++...+..+.++..+.-=.|.. ...|+-.+ +..|.-|+++. ..+.+.+.-|
T Consensus 76 ~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis----~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~ 149 (494)
T 1bpo_A 76 ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS----LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 149 (494)
T ss_dssp SSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEE----TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred CCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecC----CCeEEEEc-CCeeEEecccCCCCchhheecchhcc
Confidence 445555444 6799999999999999988876643222222 12343333 45799999974 3455555544
Q ss_pred CCCeEEEEEecCCCcEEEEee------cCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545 190 RDGIMTVEWSTSSEWILVTGG------CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK 263 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s------~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (441)
...|..-..+++.+|+++.|= -.|.+.+|..+... -+.++.+...+..
T Consensus 150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~------------------------- 203 (494)
T 1bpo_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ------------------------- 203 (494)
T ss_dssp TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEE-------------------------
T ss_pred cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEE-------------------------
Confidence 345777778889999776654 34677888776431 1122211110000
Q ss_pred ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCC---Ccee
Q 013545 264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG---RNTL 340 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~---~~~~ 340 (441)
+ .+ ++ ..+...+. +|..... ..+.+++-++... ...+
T Consensus 204 ---------------~--------~~-~g--------~~~~~~lf--~fa~r~~------~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 204 ---------------F--------KM-EG--------NAEESTLF--CFAVRGQ------AGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp ---------------E--------EC-TT--------CSSEEEEE--EEEECST------TCCEEEEEECSCCCTTCCCC
T ss_pred ---------------E--------ec-CC--------CCCCceEE--EEEEecC------CCcEEEEEEcCCCccCCCCc
Confidence 0 00 00 00111122 2322221 1367888888543 1111
Q ss_pred eeeeeEE------eccCcceEEEeeCCCcEEEEeCC-CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCC
Q 013545 341 VNFETVR------LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR 413 (441)
Q Consensus 341 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~ 413 (441)
. ..... ...+-|+.+..++.-..++..+. +-+.++|+.++.++..-+=-...|..-+-.....-++.....|
T Consensus 244 ~-kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~G 322 (494)
T 1bpo_A 244 P-KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 322 (494)
T ss_dssp C-CEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTC
T ss_pred c-ceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCc
Confidence 0 01111 12345777888888888877655 6799999999988765443344455544444444444444555
Q ss_pred cEEEeCCCC
Q 013545 414 QILVWCPSR 422 (441)
Q Consensus 414 ~i~vW~~~~ 422 (441)
.|.-=.++.
T Consensus 323 qVl~v~v~e 331 (494)
T 1bpo_A 323 QVLSVCVEE 331 (494)
T ss_dssp EEEEEEECT
T ss_pred eEEEEEEcc
Confidence 554434333
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.65 E-value=2.1 Score=43.09 Aligned_cols=201 Identities=11% Similarity=0.039 Sum_probs=112.9
Q ss_pred eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceee
Q 013545 106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184 (441)
Q Consensus 106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~ 184 (441)
+..+.+.+.++.++.+-..++.|..+++........+... .....+++.+. +..+..+-...+.|.+.+++......
T Consensus 39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~--~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWL--GKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT--TTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeC--CCEEEEEECCCCEEEEEecCCCcEEE
Confidence 4467777766666677777889999988654433323221 22334454432 34455666667889999997654322
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEe-ecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545 185 TLSGHRDGIMTVEWSTSSEWILVTG-GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK 263 (441)
Q Consensus 185 ~l~~h~~~v~~v~fsp~~~~~l~s~-s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (441)
.+.........|++.|....++++- +..+.|...++..... ..+
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l---------------------------------- 161 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTL---------------------------------- 161 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEE----------------------------------
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEE----------------------------------
Confidence 3334455678999998665566653 2234555555431100 000
Q ss_pred ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCE-EEEeecCCcEEEeeCCCCCceeee
Q 013545 264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRNTLVN 342 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D~~i~~wd~~~~~~~~~~ 342 (441)
.......+.|++++++.. .++-...++|...|+.......
T Consensus 162 -------------------------------------~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v-- 202 (628)
T 4a0p_A 162 -------------------------------------VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREV-- 202 (628)
T ss_dssp -------------------------------------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--
T ss_pred -------------------------------------ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEE--
Confidence 001124678999997554 4555667889999987644321
Q ss_pred eeeEEeccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCceEeee
Q 013545 343 FETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTF 387 (441)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~~~~l 387 (441)
+ ......|..+++.. ..+++.. ...+...|..+|+....+
T Consensus 203 ~---~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 203 I---ADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp E---EECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred e---eccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 1 11223455555544 3444443 356777777666544433
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.63 E-value=1.6 Score=41.66 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=70.4
Q ss_pred eEEEEEcc-CCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC--CceEEEEcc--CC
Q 013545 307 VTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIW--SG 381 (441)
Q Consensus 307 v~~l~~s~-dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~wd~~--~~ 381 (441)
...++++| +|..+++-..+++|+.+|..++......+. ......+..+++++++..++++.. ..+..++.. ++
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~--~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~ 307 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM--MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETG 307 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE--CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTC
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec--cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCc
Confidence 45678999 788777777888999999986653111110 001122335888999986665543 467776654 23
Q ss_pred ce--Eeeeccc---------------ccceEEEEE---------cCCCCeEEEeecCCcEEEeCCCC
Q 013545 382 KT--CLTFRGH---------------YEYVNCCCF---------SSQDQELYTGGNDRQILVWCPSR 422 (441)
Q Consensus 382 ~~--~~~l~gh---------------~~~v~~v~f---------spd~~~l~s~s~D~~i~vW~~~~ 422 (441)
.. ..++.+. -..-..++| .++|..+++-.....|+.+++..
T Consensus 308 ~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G 374 (433)
T 4hw6_A 308 KLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG 374 (433)
T ss_dssp CBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS
T ss_pred ccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC
Confidence 21 1222221 123577999 67777777766677899998743
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.52 E-value=1.1 Score=40.92 Aligned_cols=110 Identities=9% Similarity=0.076 Sum_probs=64.3
Q ss_pred EEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---------eeEEEeec-cCCCCccEEEEEe----------
Q 013545 108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---------KVYRTAMS-PLAASHMLIAAGT---------- 167 (441)
Q Consensus 108 ~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~las~s---------- 167 (441)
+..|.+.++.++++.-..++|-.||...+..... ..++ ....+.+- .+.. ..++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTSC
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccccccc
Confidence 3566654444444444799999999986654433 3322 12333341 0222 44555433
Q ss_pred ---CCCcEEEEECC---CCceeeeec--CCC-----------CCeEEEEEecCCCcEEEEeecC-CcEEEEEc
Q 013545 168 ---EDVQVRLCDIA---SGAISQTLS--GHR-----------DGIMTVEWSTSSEWILVTGGCD-GAIRFWDI 220 (441)
Q Consensus 168 ---~d~~I~vwdl~---~~~~~~~l~--~h~-----------~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~ 220 (441)
.+..+..+|+. +++.+.... +.. .....++..++|. ..++++.- +.|-..|.
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSA 166 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECT
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeC
Confidence 25779999999 887654332 211 2367899999987 56777776 66555543
No 294
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=95.24 E-value=1.4 Score=38.62 Aligned_cols=168 Identities=13% Similarity=0.152 Sum_probs=99.1
Q ss_pred eeecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCc
Q 013545 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQK 263 (441)
Q Consensus 184 ~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (441)
+.+.|-...+..++|+|++..+++....++.|...|+. ++..+.+.-
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-------------------------------- 66 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-------------------------------- 66 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC--------------------------------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec--------------------------------
Confidence 34566667899999999877677667777788877875 433322100
Q ss_pred ccCCCCCccccCcccccCCCCcccccCCCcccccccceeeccCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeee
Q 013545 264 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF 343 (441)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~ 343 (441)
.+ ....-.|++.+++.++++.-.++++.++++..... ....
T Consensus 67 -------------------------------------~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~-i~~~ 107 (255)
T 3qqz_A 67 -------------------------------------DF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE-VKIL 107 (255)
T ss_dssp -------------------------------------SS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC-EEEE
T ss_pred -------------------------------------CC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe-eeee
Confidence 00 02245678889998878766778899998765432 1111
Q ss_pred eeEEecc------CcceEEEeeCCCcEEEEeCC-CceEEEEcc---CCceEeee-------cccccceEEEEEcCCCCeE
Q 013545 344 ETVRLQT------SKPIQLATTQDPAVVFVPCM-TAVKAFDIW---SGKTCLTF-------RGHYEYVNCCCFSSQDQEL 406 (441)
Q Consensus 344 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~---~~~~~~~l-------~gh~~~v~~v~fspd~~~l 406 (441)
....+.. ...--+++.+.+..++++.. ....+|.+. ....+..+ ..+...+..+++.|....|
T Consensus 108 ~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~l 187 (255)
T 3qqz_A 108 KKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTL 187 (255)
T ss_dssp EEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEE
T ss_pred eeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeE
Confidence 1111110 11235788888766666544 344555543 11112211 1123457899999986665
Q ss_pred EE-eecCCcEEEeCCCCC
Q 013545 407 YT-GGNDRQILVWCPSRH 423 (441)
Q Consensus 407 ~s-~s~D~~i~vW~~~~~ 423 (441)
+. ....+.+.+.|....
T Consensus 188 liLS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 188 LVLSHESRALQEVTLVGE 205 (255)
T ss_dssp EEEETTTTEEEEECTTCC
T ss_pred EEEECCCCeEEEEcCCCC
Confidence 54 445567888887654
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=94.77 E-value=3.9 Score=41.11 Aligned_cols=227 Identities=6% Similarity=-0.016 Sum_probs=116.9
Q ss_pred CCcEEEEECCCCe--EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-eeeecCCCCCeEEEEEecC
Q 013545 125 DHYVKVWDTNCTR--VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGIMTVEWSTS 201 (441)
Q Consensus 125 D~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~-~~~l~~h~~~v~~v~fsp~ 201 (441)
.+.|+..|+.... .......-+....+.+.+. ...+..+-...+.|..++++.... ...+.........+++.+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~--~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~ 94 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS--HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 94 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETT--TTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeC--CCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence 4567777776442 2212222233455556553 234555555567888888876532 2233333356789999987
Q ss_pred CCcEEEEeecCCcEEEEEcCCCceeeEeccCCccccCCCCcccccccccCccCCcCCCCCCcccCCCCCccccCcccccC
Q 013545 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA 281 (441)
Q Consensus 202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (441)
+..++++-...+.|.+.|+.... ..++-.
T Consensus 95 ~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~-------------------------------------------------- 123 (619)
T 3s94_A 95 GEKLYWTDSETNRIEVSNLDGSL-RKVLFW-------------------------------------------------- 123 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCS-CEEEEC--------------------------------------------------
T ss_pred CCEEEEEeCCCCEEEEEECCCCC-EEEEEe--------------------------------------------------
Confidence 66677776677888888875321 111100
Q ss_pred CCCcccccCCCcccccccceeeccCeEEEEEccCC-CEEEEe-ecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEee
Q 013545 282 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSA-GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT 359 (441)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sg-s~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (441)
.......+|++.|.+ ..+.|- +....|...++........ . ......|.-+++.
T Consensus 124 --------------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l-~---~~~~~~P~Glald 179 (619)
T 3s94_A 124 --------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII-I---NSEIYWPNGLTLD 179 (619)
T ss_dssp --------------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-E---CSSCSSEEEEEEE
T ss_pred --------------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE-E---eCCCCCCcEEEEE
Confidence 001124567888864 444544 2245677667664322111 0 1123456778888
Q ss_pred CCCcEEEEeCC--CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCCCCCcc
Q 013545 360 QDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD 429 (441)
Q Consensus 360 ~~~~~~~~~~~--~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~~~~~~ 429 (441)
++...++++-. ..+..+++........+.+.......|++..+ ..++|-...+.|..-+..++.....+
T Consensus 180 ~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 180 YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp TTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred ccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence 87777776643 45666666433222222222233456777665 44555555677888888777644333
No 296
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=94.54 E-value=2.2 Score=37.37 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=50.1
Q ss_pred eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCCC
Q 013545 147 KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA 223 (441)
Q Consensus 147 ~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~ 223 (441)
.+..+++.+. ++.+.++...++.|...|+. ++.++.+. +-......|++.+++. ++++.-.++.+.++++...
T Consensus 28 ~lSGla~~~~--~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 28 NISSLTWSAQ--SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVISLTPN 101 (255)
T ss_dssp CEEEEEEETT--TTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEEECTT
T ss_pred CcceeEEeCC--CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEEcCCC
Confidence 3555666664 34567777778899999998 87777653 2225678899988875 4455445678888887643
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.41 E-value=1.4 Score=42.75 Aligned_cols=156 Identities=10% Similarity=0.065 Sum_probs=86.7
Q ss_pred eeEEEccCC-CCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEE-------eeCCCC
Q 013545 46 INSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW-------YPVDTG 117 (441)
Q Consensus 46 V~~l~~s~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-------~~~~~~ 117 (441)
-..|+|+|. +++++++-...+.|++.|.+++... .+... ..+.......+++ .+ +++
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-------------~l~~~-~~~~~~~p~~ia~~~~~~~~d~-~G~ 205 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-------------SPLNI-NTIPTNRIRSIAFNKKIEGYAD-EAE 205 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-------------EEECC-TTSSCSBEEEEEECCCBTTTBC-TTC
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-------------EEEcc-CccccCCCcEEEEeecccccCC-CCC
Confidence 468899873 4555555555567888888754321 00000 0111223555666 55 677
Q ss_pred EEEEEeCCC-------cEEEEECCC-Ce--------EEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC---
Q 013545 118 LFVTGSYDH-------YVKVWDTNC-TR--------VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA--- 178 (441)
Q Consensus 118 ~l~sgs~D~-------~i~iWd~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~--- 178 (441)
.|+.+.+.+ .|-+.+... +. .+..+. ....+++++. ...++++-..++.|..+|++
T Consensus 206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~---~p~giavdp~--~g~LYvtd~~~g~V~r~d~~~~~ 280 (496)
T 3kya_A 206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK---QCNGATIHPI--NGELYFNSYEKGQVFRLDLVDYF 280 (496)
T ss_dssp EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES---CCCCEEECTT--TCCEEEEETTTTEEEEECHHHHH
T ss_pred EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC---CceEEEEcCC--CCeEEEEECCCCEEEEEeccccc
Confidence 565555543 255555332 12 122221 2233445543 34566666778889999997
Q ss_pred ----CCce-----------eee-ec-CCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 179 ----SGAI-----------SQT-LS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 179 ----~~~~-----------~~~-l~-~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
++.. ... +. +.......++|+|+++.++++=+....|+.+|..
T Consensus 281 ~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 281 KTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 5553 111 11 2234457999999998666666667888886653
No 298
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.30 E-value=1.2 Score=48.60 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=64.3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCC-CceeeeecCC----
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGH---- 189 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~-~~~~~~l~~h---- 189 (441)
..+++|--+ .+++.|+|+.+...+..+.++..+.-=.|. .. ..|+-.+ +..|.-|++.. ..+.+.+.-|
T Consensus 76 ~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWi--s~--~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~ 149 (1630)
T 1xi4_A 76 ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SL--NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 149 (1630)
T ss_pred CcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEec--CC--CeeEEEc-CCeEEEeccCCCCccHHHHhcchhcc
Confidence 344554433 679999999998888888876664322222 11 2333332 45799999974 3455555444
Q ss_pred CCCeEEEEEecCCCcEEEEee------cCCcEEEEEcCC
Q 013545 190 RDGIMTVEWSTSSEWILVTGG------CDGAIRFWDIRR 222 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s------~Dg~I~iWD~~~ 222 (441)
...|..-..+++.+|+++.|= -.|.+.+|.+..
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 456777778888898776653 346777777653
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=94.10 E-value=1.6 Score=40.12 Aligned_cols=111 Identities=10% Similarity=0.126 Sum_probs=73.0
Q ss_pred CCC-EEEEEeCCCcEEEEECC-------CCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECC-----CCc
Q 013545 115 DTG-LFVTGSYDHYVKVWDTN-------CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-----SGA 181 (441)
Q Consensus 115 ~~~-~l~sgs~D~~i~iWd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~-----~~~ 181 (441)
.+. +++....++.+..|++. +.+.+.++.+.+.+-.+...+. ...|..+-.+.-|..++.+ +++
T Consensus 141 ~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~---~g~Lyv~eEd~GIw~~da~p~~~~~~~ 217 (355)
T 3amr_A 141 TGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDE---YGRLYIAEEDEAIWKFSAEPDGGSNGT 217 (355)
T ss_dssp TCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETT---TTEEEEEETTTEEEEEECSTTSCSCCE
T ss_pred CCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCC---CCeEEEecccceEEEEeCCcCCCCCce
Confidence 344 57777788999999882 3456788888877666665543 2356777777777777754 234
Q ss_pred eeeeec-CCC-CCeEEEEE--ecCCC-cEEEEeecCCcEEEEEcC-CCceeeE
Q 013545 182 ISQTLS-GHR-DGIMTVEW--STSSE-WILVTGGCDGAIRFWDIR-RAGCFRV 228 (441)
Q Consensus 182 ~~~~l~-~h~-~~v~~v~f--sp~~~-~~l~s~s~Dg~I~iWD~~-~~~~~~~ 228 (441)
.+..+. +|. ..+..+++ .++++ ++|+|+-.+++..+||.. +.+.+..
T Consensus 218 ~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 218 VIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp EEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred EEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 444432 332 46888887 45555 677777678899999986 4443333
No 300
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.00 E-value=3.2 Score=36.99 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=52.3
Q ss_pred CCCEEEEeecC-----CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC------CceEEEEccCCc-
Q 013545 315 DGMYLLSAGSD-----SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM------TAVKAFDIWSGK- 382 (441)
Q Consensus 315 dg~~l~sgs~D-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~wd~~~~~- 382 (441)
+++.++.|+.+ ..+.+||+.+.+-.. ... +........+...++.+++.++. ..+.+||+.+.+
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~--~~~--~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN--VTP--MATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEE--ECC--CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEe--CCC--CCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 56666666654 458889988754221 111 11111111222234555555432 357888886643
Q ss_pred -eEeeecccccceEEEEEcCCCCeEEEeecC-----CcEEEeCCCCCC
Q 013545 383 -TCLTFRGHYEYVNCCCFSSQDQELYTGGND-----RQILVWCPSRHI 424 (441)
Q Consensus 383 -~~~~l~gh~~~v~~v~fspd~~~l~s~s~D-----~~i~vW~~~~~~ 424 (441)
.+..+.........+. -+++.++.||.+ ..|.++|+.+..
T Consensus 235 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 235 TTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 2222221111112222 367787888766 357788887654
No 301
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.75 E-value=4.7 Score=38.13 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=64.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecC-----CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCce-------
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-----GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI------- 182 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~------- 182 (441)
++..++.+ .++.||.-++.....-+.++.+ +.+..+.+++.+ .+||..+ +..|.|..+..+..
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG---~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG---DLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS---SEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC---CEEEEec-CCeEEEEEecCccccCccccc
Confidence 44444444 4578888887643322233333 145567777754 4666654 57899999974320
Q ss_pred -----eeeec-C-----CCCCeEEEEEecCCCc--EEEEeecCCcEEEEEcCC
Q 013545 183 -----SQTLS-G-----HRDGIMTVEWSTSSEW--ILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 183 -----~~~l~-~-----h~~~v~~v~fsp~~~~--~l~s~s~Dg~I~iWD~~~ 222 (441)
.+.+. + ...+|..+.|+|-+.. .|+.=..|+.||+||+..
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 11222 1 3577999999997542 456777899999999974
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.41 E-value=4.5 Score=36.85 Aligned_cols=161 Identities=15% Similarity=0.198 Sum_probs=90.8
Q ss_pred ceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccc-cCcccceeEEEEe--eCCCCEEEE
Q 013545 45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHE-HGHKYAISSAIWY--PVDTGLFVT 121 (441)
Q Consensus 45 ~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~--~~~~~~l~s 121 (441)
.=-+++|++.++.++++.-..++|..||...+...+ + ....... ......+..+.+. .+++.+++.
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~----------~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv 82 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN----------V-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAV 82 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE----------E-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEE
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE----------E-ecCCccccCCCcceeeEEEEeccCCCCcEEEE
Confidence 344788886667777777789999999986442110 0 0000000 0011123455662 224545553
Q ss_pred Ee-------------CCCcEEEEECC---CCeEEEEEecC----C----------eeEEEeeccCCCCccEEEEEeCC-C
Q 013545 122 GS-------------YDHYVKVWDTN---CTRVVMNFKMP----G----------KVYRTAMSPLAASHMLIAAGTED-V 170 (441)
Q Consensus 122 gs-------------~D~~i~iWd~~---~~~~~~~~~~~----~----------~~~~~~~~~~~~~~~~las~s~d-~ 170 (441)
.. .+..|..+|+. +++.+....+. + ....++..+. ++. -++++.. +
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~--Gna-YVt~s~~~~ 159 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD--GNS-YVAFALGMP 159 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT--SCE-EEEEEESSC
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC--CCE-EEeCCCCCC
Confidence 32 26789999998 78776665542 1 2444555443 333 3344445 6
Q ss_pred cEEEEECCCCceeeee------cCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcC
Q 013545 171 QVRLCDIASGAISQTL------SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221 (441)
Q Consensus 171 ~I~vwdl~~~~~~~~l------~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~ 221 (441)
.|...+..... +..+ .........++++|++..+++..+ .|.+..+|++
T Consensus 160 ~I~rV~pdG~~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~ 214 (334)
T 2p9w_A 160 AIARVSADGKT-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS 214 (334)
T ss_dssp EEEEECTTSCC-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred eEEEEeCCCCE-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence 66666664332 2211 112233568999999986666655 9999999986
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.31 E-value=2.8 Score=39.66 Aligned_cols=108 Identities=9% Similarity=0.151 Sum_probs=75.1
Q ss_pred EccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEec----cCcceEEEeeCCCcEEEEeCCCceEEEEccCCc-----
Q 013545 312 VTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ----TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGK----- 382 (441)
Q Consensus 312 ~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~----- 382 (441)
.+.+|..|+.+ .++.||.-++.... .++.+... ...+.++..+++|.+++..+...+.+..+-.+.
T Consensus 28 ~~~n~t~i~~a-~~n~iR~~~i~~~~----~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 28 SSQNGTRIVFI-QDNIIRWYNVLTDS----LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EETTTTEEEEE-ETTEEEEEETTTCS----SCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCC
T ss_pred EEcCCCEEEEE-ECCEEEEEECCCCC----cceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcc
Confidence 44566666655 45788888887432 13343433 235667899999999999999999998874221
Q ss_pred -------eEeeecc------cccceEEEEEcCC---CCeEEEeecCCcEEEeCCCCCC
Q 013545 383 -------TCLTFRG------HYEYVNCCCFSSQ---DQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 383 -------~~~~l~g------h~~~v~~v~fspd---~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
.+..+.- ...+|..+.|+|- +..|++=-.|++||+|++....
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~ 160 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ 160 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence 0112221 2467999999996 4578888899999999998744
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.09 E-value=7.3 Score=35.95 Aligned_cols=114 Identities=11% Similarity=0.107 Sum_probs=64.3
Q ss_pred eEEEEEcc--CCC--EEEEeec--CCcEEEeeCCCCCceeeeeeeEEe-ccCcceEEEeeCCCcEEEEeCC---------
Q 013545 307 VTGLKVTE--DGM--YLLSAGS--DSRIRLWDVESGRNTLVNFETVRL-QTSKPIQLATTQDPAVVFVPCM--------- 370 (441)
Q Consensus 307 v~~l~~s~--dg~--~l~sgs~--D~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------- 370 (441)
...+.+.+ ++. .+++... +.+|.+|++............... ....+..+.+.+++...+....
T Consensus 114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~ 193 (355)
T 3sre_A 114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKS 193 (355)
T ss_dssp EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHH
T ss_pred eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccccc
Confidence 34455544 343 3444333 678889887764332222222211 1234566777788876555321
Q ss_pred -------CceEEEEccCCceEeeecccccceEEEEEcCCCCeEEEe-ecCCcEEEeCCC
Q 013545 371 -------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG-GNDRQILVWCPS 421 (441)
Q Consensus 371 -------~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~-s~D~~i~vW~~~ 421 (441)
..-++|.+..++ +..+...-..-+.++||||+++|+.+ +..+.|..|++.
T Consensus 194 ~e~~~~~~~g~vyr~d~~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 194 WEMHLGLAWSFVTYYSPND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp HHHHTTCCCEEEEEECTTC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred chhhccCCccEEEEEECCe-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 124566555443 33333333457999999999887755 456788888875
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.04 E-value=1.5 Score=40.65 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=58.2
Q ss_pred CeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEE---eccCcceEEEeeCC---CcEEEEeCC-------Cc
Q 013545 306 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR---LQTSKPIQLATTQD---PAVVFVPCM-------TA 372 (441)
Q Consensus 306 ~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~-------~~ 372 (441)
....|+|.|||+++++ ..+++|++++ .++.. .+.... .....+.-+++.++ +..+++... ..
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~--~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLS--TYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEE--EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCcc--EeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 4678999999997665 4569999998 33311 111111 11345677888887 445544322 45
Q ss_pred eEEEEccCCc-----e-Eeeec---ccccceEEEEEcCCCCeEEEee
Q 013545 373 VKAFDIWSGK-----T-CLTFR---GHYEYVNCCCFSSQDQELYTGG 410 (441)
Q Consensus 373 ~~~wd~~~~~-----~-~~~l~---gh~~~v~~v~fspd~~~l~s~s 410 (441)
+..++...+. . +..+. +.......++|.|||.++++.+
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 6666665431 1 11233 1111236899999998777754
No 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=91.37 E-value=7.5 Score=34.59 Aligned_cols=98 Identities=9% Similarity=0.042 Sum_probs=49.2
Q ss_pred EEEEEeC--CCcEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEeCC----CcEEEEECCCCceee--eec
Q 013545 118 LFVTGSY--DHYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTED----VQVRLCDIASGAISQ--TLS 187 (441)
Q Consensus 118 ~l~sgs~--D~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s~d----~~I~vwdl~~~~~~~--~l~ 187 (441)
+++.||. ...+.+||..+.+-...-.++... ...... ++.+++.|+.+ ..+.+||+.+.+-.. .+.
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW----DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE----TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE----CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 4445554 357888998877644322222111 111111 23456666544 568899998875322 222
Q ss_pred CCCCCeEEEEEecCCCcEEEEeecC------CcEEEEEcCC
Q 013545 188 GHRDGIMTVEWSTSSEWILVTGGCD------GAIRFWDIRR 222 (441)
Q Consensus 188 ~h~~~v~~v~fsp~~~~~l~s~s~D------g~I~iWD~~~ 222 (441)
.......++.+ +++ +++.|+.+ ..+.+||+.+
T Consensus 90 ~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~ 127 (306)
T 3ii7_A 90 TPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRT 127 (306)
T ss_dssp SCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTT
T ss_pred ccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCC
Confidence 21222222322 343 66777755 3466677654
No 307
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=90.91 E-value=9 Score=34.70 Aligned_cols=157 Identities=13% Similarity=0.130 Sum_probs=82.6
Q ss_pred ceeeecCCCCceeEEEccCCCCcEEEEeeCCCcE-EEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEee
Q 013545 35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSV-AVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP 113 (441)
Q Consensus 35 ~~~~~~~H~~~V~~l~~s~~~~~~l~s~s~Dg~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~ 113 (441)
+..+..++...+..+.+.+ ++++++.+. +|.+ +-+|- .+..... + ...+...+..+.+.+
T Consensus 154 W~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~-gG~tW~~----------~------~~~~~~~~~~~~~~~ 214 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEP-GQTAWEP----------H------NRTTSRRLHNMGFTP 214 (327)
T ss_dssp EEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECT-TCSSCEE----------E------ECCSSSCEEEEEECT
T ss_pred CEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCC-CCCceeE----------C------CCCCCCccceeEECC
Confidence 4555566777899999986 466666654 4544 33442 1111100 0 002223455566654
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-----CeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeec-
Q 013545 114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-----GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS- 187 (441)
Q Consensus 114 ~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~- 187 (441)
++. +..++.++.+.+++...++.-.....+ ..+..+.+.+. ..+++++ .++.| ++....|+.-..+.
T Consensus 215 -~g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~---~~~~~~g-~~g~i-~~S~DgG~tW~~~~~ 287 (327)
T 2xbg_A 215 -DGR-LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP---NEVWLAG-GAGAL-LCSQDGGQTWQQDVD 287 (327)
T ss_dssp -TSC-EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS---SCEEEEE-STTCE-EEESSTTSSCEECGG
T ss_pred -CCC-EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC---CEEEEEe-CCCeE-EEeCCCCcccEEcCc
Confidence 454 445567788777642223322222211 12455555542 3355554 46666 45555565433333
Q ss_pred --CCCCCeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545 188 --GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219 (441)
Q Consensus 188 --~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD 219 (441)
.+...+.++.|.+++. ++.++.+|.|.-++
T Consensus 288 ~~~~~~~~~~v~~~~~~~--~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 288 VKKVPSNFYKILFFSPDQ--GFILGQKGILLRYV 319 (327)
T ss_dssp GTTSSSCCCEEEEEETTE--EEEECSTTEEEEEC
T ss_pred cCCCCCCeEEEEEECCCc--eEEEcCCceEEEEc
Confidence 2346678899986553 45667789877665
No 308
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=90.65 E-value=15 Score=36.79 Aligned_cols=354 Identities=11% Similarity=0.035 Sum_probs=159.9
Q ss_pred CceeEEEccCCCCcEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEEEeeCCCCEEEEE-
Q 013545 44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG- 122 (441)
Q Consensus 44 ~~V~~l~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~sg- 122 (441)
.....|++++.++++.++-...+.|.+.++..... .++. . ... .....+++.|.++.++.|-
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-----------~~l~-~-~~l----~~P~~Iavdp~~g~ly~tD~ 146 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-----------KVLF-W-QEL----DQPRAIALDPSSGFMYWTDW 146 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----------EEEE-C-SSC----SCCCCEEEETTTTEEEEEEC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-----------EEEE-e-CCC----CCCceEEEecCCCeEEEecc
Confidence 46778999865666777777888999998864321 1111 0 111 1233456666445444443
Q ss_pred eCCCcEEEEECCCCeEEEEEe-cCCeeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeeecCCCCCeEEEEEecC
Q 013545 123 SYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS 201 (441)
Q Consensus 123 s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l~~h~~~v~~v~fsp~ 201 (441)
+....|..-++.......... .-.....+++.+.. ..+..+-...+.|...|+........+.+......++++..+
T Consensus 147 g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~--~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~ 224 (619)
T 3s94_A 147 GEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEE--QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED 224 (619)
T ss_dssp SSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTT--TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS
T ss_pred CCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccC--CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC
Confidence 113445555553222211111 11123455555532 334444455678999998765443333322233356677654
Q ss_pred CCcEEEEeecCCcEEEEEcCCCceeeEeccCC-cccc-------CCCCc-ccccccccCccCCcCCCCC---CcccCCCC
Q 013545 202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQ-SQLG-------RRPPL-LKRKSLSAGQNSSVKPRAP---QKRSANGN 269 (441)
Q Consensus 202 ~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~~~-~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 269 (441)
.++++-...+.|...|..+++....+.... .+.+ ..+.. ..+....+.. .+.....+ ...-.+..
T Consensus 225 --~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~C-s~lCl~~~~~~~~~C~C~~ 301 (619)
T 3s94_A 225 --ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGC-SHLCLMSPVKPFYQCACPT 301 (619)
T ss_dssp --EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGC-SSEEEECSSTTSEEEECCT
T ss_pred --EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcc-cceEECCCCCCCceEeCCc
Confidence 567776667889999987765444332211 0000 00000 0000000000 00000000 00000111
Q ss_pred CccccCcccc---------c-CC-CCccc-ccCCCcccccccceeeccCeEEEEEccC-CCEEEEeecCCcEEEeeCCCC
Q 013545 270 GVRQSSVGRI---------P-AK-GSVRQ-RLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESG 336 (441)
Q Consensus 270 ~~~~~~~~~~---------~-~~-~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~sgs~D~~i~~wd~~~~ 336 (441)
+....++++. . +. ..+.. .+.................+.+|+|.+. +..+++-...++|+.+++...
T Consensus 302 g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~ 381 (619)
T 3s94_A 302 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS 381 (619)
T ss_dssp TCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred hheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC
Confidence 1111111110 0 00 00000 0000000000000011234678999984 555666667889999998764
Q ss_pred CceeeeeeeEEeccCcceEEEeeCCCcEEEEeC--CCceEEEEccCCceEeeecccccceEEEEEcCCCCe-EEEe-ecC
Q 013545 337 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE-LYTG-GND 412 (441)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~~~~l~gh~~~v~~v~fspd~~~-l~s~-s~D 412 (441)
..... .......+.-+++.+.+..+++.. ...+.+.++........+...-.....+++.|...+ ++|- +..
T Consensus 382 ~~~~v----~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~ 457 (619)
T 3s94_A 382 GSQFV----VTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI 457 (619)
T ss_dssp SCEEE----ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSS
T ss_pred ccEEE----EECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCC
Confidence 32111 111123566678877656555543 356777777543322222333456799999997444 4453 223
Q ss_pred CcEEEeCCCCC
Q 013545 413 RQILVWCPSRH 423 (441)
Q Consensus 413 ~~i~vW~~~~~ 423 (441)
..|...+++..
T Consensus 458 ~~I~r~~~dG~ 468 (619)
T 3s94_A 458 PKIERAALDGS 468 (619)
T ss_dssp CEEEEEETTSC
T ss_pred CEEEEEccCCC
Confidence 45655555543
No 309
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=89.05 E-value=12 Score=33.21 Aligned_cols=105 Identities=13% Similarity=0.189 Sum_probs=51.5
Q ss_pred CCCEEEEeecC-------CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC------CceEEEEccCC
Q 013545 315 DGMYLLSAGSD-------SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM------TAVKAFDIWSG 381 (441)
Q Consensus 315 dg~~l~sgs~D-------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~wd~~~~ 381 (441)
+++.++.|+.+ ..+.+||+.+.+-.. ... +........+...++.+.+.++. ..+.+||+.+.
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~--~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY--IAE--MSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEE--ECC--CSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE--CCC--CccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 45555555543 358889988754221 111 11111111222234555555432 35788888664
Q ss_pred c--eEeeecccccceEEEEEcCCCCeEEEeecCC-----cEEEeCCCCCCC
Q 013545 382 K--TCLTFRGHYEYVNCCCFSSQDQELYTGGNDR-----QILVWCPSRHIS 425 (441)
Q Consensus 382 ~--~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~-----~i~vW~~~~~~~ 425 (441)
+ .+..+......-..+. .+++.++.||.++ .+.++|+.+..-
T Consensus 231 ~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 231 AWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 3 2222211111111222 3677888887664 488888887653
No 310
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=88.60 E-value=13 Score=33.19 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=50.0
Q ss_pred CCCEEEEeec-C-----CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC------CceEEEEccCCc
Q 013545 315 DGMYLLSAGS-D-----SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM------TAVKAFDIWSGK 382 (441)
Q Consensus 315 dg~~l~sgs~-D-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~wd~~~~~ 382 (441)
+++.++.|+. + ..+.+||+.+.+-.. ... +........+...++.+.+.++. ..+.+||+.+.+
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~--~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE--LAP--MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEE--CCC--CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEE--CCC--CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 4556666665 2 468888988754221 111 11111111222334555554432 246778876542
Q ss_pred --eEeeecccccceEEEEEcCCCCeEEEeecCC--------------cEEEeCCCCCC
Q 013545 383 --TCLTFRGHYEYVNCCCFSSQDQELYTGGNDR--------------QILVWCPSRHI 424 (441)
Q Consensus 383 --~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~--------------~i~vW~~~~~~ 424 (441)
.+..+......-..+. -+++.++.||.++ .|.++|+.+..
T Consensus 224 W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 224 WAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 2222211111112222 2667777777642 36778887654
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=88.37 E-value=15 Score=33.76 Aligned_cols=108 Identities=6% Similarity=0.059 Sum_probs=67.7
Q ss_pred CeEEEEEccCCCEEEEee-----------------cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEe
Q 013545 306 AVTGLKVTEDGMYLLSAG-----------------SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP 368 (441)
Q Consensus 306 ~v~~l~~s~dg~~l~sgs-----------------~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (441)
..+++++.++|.+.++.. ..+.|..+|.. +.. ........+.-+++++|+..++++
T Consensus 166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~-----~~~~~l~~pNGia~spDg~~lYva 238 (355)
T 3sre_A 166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR-----VVAEGFDFANGINISPDGKYVYIA 238 (355)
T ss_dssp SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE-----EEEEEESSEEEEEECTTSSEEEEE
T ss_pred CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE-----EeecCCcccCcceECCCCCEEEEE
Confidence 467888888888777754 12455555553 211 111122456678999999888776
Q ss_pred CC--CceEEEEccC-Cce--EeeecccccceEEEEEcC-CCCeEEEeecCC-cEEEeCCC
Q 013545 369 CM--TAVKAFDIWS-GKT--CLTFRGHYEYVNCCCFSS-QDQELYTGGNDR-QILVWCPS 421 (441)
Q Consensus 369 ~~--~~~~~wd~~~-~~~--~~~l~gh~~~v~~v~fsp-d~~~l~s~s~D~-~i~vW~~~ 421 (441)
.. ..+..|++.. +.. ...+ ...+....+++.+ +|.+.+++..++ .|..|++.
T Consensus 239 dt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 239 ELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred eCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 44 5678888753 332 1233 2245678899999 598888776553 56666665
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=88.18 E-value=3.7 Score=37.91 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=56.4
Q ss_pred CeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCC---CcEEEEe-CC--------Cce
Q 013545 306 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD---PAVVFVP-CM--------TAV 373 (441)
Q Consensus 306 ~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~--------~~~ 373 (441)
....|+|.|||+++++ ..+++|+++|. .++.....+.........+.-+++.++ ...+++. .. ..+
T Consensus 30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp CEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 4678999999986665 55699999973 333111111100011234667888887 4444443 21 345
Q ss_pred EEEEccCC--c-----e-Eeeec---ccccceEEEEEcCCCCeEEEee
Q 013545 374 KAFDIWSG--K-----T-CLTFR---GHYEYVNCCCFSSQDQELYTGG 410 (441)
Q Consensus 374 ~~wd~~~~--~-----~-~~~l~---gh~~~v~~v~fspd~~~l~s~s 410 (441)
..|+.... . . +..+. .|. ...++|.|||.++++.+
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECC
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEEC
Confidence 55665443 1 1 11122 232 46799999998888754
No 313
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=86.83 E-value=7 Score=37.48 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=58.2
Q ss_pred CeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee-eeeeEEe---ccCcceEEEeeCC---CcEEEEeCC--------
Q 013545 306 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV-NFETVRL---QTSKPIQLATTQD---PAVVFVPCM-------- 370 (441)
Q Consensus 306 ~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~-------- 370 (441)
..++|+|.|+|+++++-...++|++++...++.... .+..... ......-+++.|+ ...+++...
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 467999999999888765556799888665542211 1110000 1233446788874 444444321
Q ss_pred ------CceEEEEccCC--c-----eEe-eec---ccccceEEEEEcCCCCeEEEeec
Q 013545 371 ------TAVKAFDIWSG--K-----TCL-TFR---GHYEYVNCCCFSSQDQELYTGGN 411 (441)
Q Consensus 371 ------~~~~~wd~~~~--~-----~~~-~l~---gh~~~v~~v~fspd~~~l~s~s~ 411 (441)
..+..++...+ + .+. .+. .| ....|+|.|||.++++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H--~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCC--CCCeEeECCCCeEEEEECC
Confidence 23444444322 1 111 122 23 3689999999998887654
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=86.77 E-value=7 Score=35.96 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=60.2
Q ss_pred cCeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceee-eeeeE-EeccCcceEEEeeCC---CcEEEEe----CCCceEE
Q 013545 305 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV-NFETV-RLQTSKPIQLATTQD---PAVVFVP----CMTAVKA 375 (441)
Q Consensus 305 ~~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~ 375 (441)
...+.|+|.|||..+++--..++|++++...++.... .+..+ ......+.-+++.|+ ...+++. ....+-.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 3478999999999888776689999998765543211 00000 011344566788875 2333331 2234444
Q ss_pred EEccCCc----------e-Eeeec---ccccceEEEEEcCCCCeEEEeec
Q 013545 376 FDIWSGK----------T-CLTFR---GHYEYVNCCCFSSQDQELYTGGN 411 (441)
Q Consensus 376 wd~~~~~----------~-~~~l~---gh~~~v~~v~fspd~~~l~s~s~ 411 (441)
|.+..+. . +..+. .|. -..|+|.|||.++++.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBC
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECC
Confidence 5544311 1 11121 232 467999999998888653
No 315
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=86.62 E-value=23 Score=33.85 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=20.8
Q ss_pred CCCeEEEEEecCCCcEEEEeecC-CcEEEEEcC
Q 013545 190 RDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIR 221 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s~D-g~I~iWD~~ 221 (441)
....++++|.|+++ ++++ ... +.|++++..
T Consensus 26 l~~P~~~a~~pdG~-l~V~-e~~gg~I~~~~~~ 56 (454)
T 1cru_A 26 LNKPHALLWGPDNQ-IWLT-ERATGKILRVNPE 56 (454)
T ss_dssp CSSEEEEEECTTSC-EEEE-ETTTCEEEEECTT
T ss_pred CCCceEEEEcCCCc-EEEE-EcCCCEEEEEECC
Confidence 34568999999997 5665 444 467777654
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=85.92 E-value=18 Score=31.91 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=54.9
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeCC-----CcEEEEECCCCceee
Q 013545 115 DTGLFVTGSYD-----HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED-----VQVRLCDIASGAISQ 184 (441)
Q Consensus 115 ~~~~l~sgs~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~d-----~~I~vwdl~~~~~~~ 184 (441)
++.+++.||.+ ..+.++|+.+.+-...-.++........... ++.+++.|+.+ ..+.+||+++.+-..
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 56677777765 4588899887765433222221111111111 23456666543 468999998875322
Q ss_pred --eecCCCCCeEEEEEecCCCcEEEEeecC-----CcEEEEEcCCC
Q 013545 185 --TLSGHRDGIMTVEWSTSSEWILVTGGCD-----GAIRFWDIRRA 223 (441)
Q Consensus 185 --~l~~h~~~v~~v~fsp~~~~~l~s~s~D-----g~I~iWD~~~~ 223 (441)
.+........++.+ +++ +++.|+.+ ..|.+||+++.
T Consensus 237 ~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 237 VTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp ECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCCC
Confidence 22211222223333 444 67777765 35778887654
No 317
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=85.87 E-value=21 Score=32.70 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=21.5
Q ss_pred CCeEEEEEecCCCcEEEEeecCCcEEEEEc
Q 013545 191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220 (441)
Q Consensus 191 ~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~ 220 (441)
...+.++|.|++++++++ ...|.|++++.
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEET
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeC
Confidence 456899999998744554 56788888874
No 318
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=85.83 E-value=20 Score=32.36 Aligned_cols=111 Identities=15% Similarity=0.076 Sum_probs=58.6
Q ss_pred CeEEEEEccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEecc-CcceEEEeeCCCcEEEEeCCCceEEEEccCCceE
Q 013545 306 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT-SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTC 384 (441)
Q Consensus 306 ~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~ 384 (441)
.+..+.+++++..++ .+.++.+++.+...++ ....+....+.. .....+++.+++.++++...+.+ .+....|+.-
T Consensus 206 ~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~-tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW 282 (327)
T 2xbg_A 206 RLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSE-NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTW 282 (327)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEETTEEE-EECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSC
T ss_pred ccceeEECCCCCEEE-EeCCceEEEecCCCCC-eeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCccc
Confidence 467788999887665 4567777776422111 000000000001 11234455566666555544434 3333334433
Q ss_pred eeec---ccccceEEEEEcCCCCeEEEeecCCcEEEeCC
Q 013545 385 LTFR---GHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 420 (441)
Q Consensus 385 ~~l~---gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~ 420 (441)
..+. .+...+.+++|.++++ ++.++.+|+|..++.
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 283 QQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 3333 2345688999986554 666778998877765
No 319
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=85.56 E-value=22 Score=32.57 Aligned_cols=99 Identities=13% Similarity=0.138 Sum_probs=52.8
Q ss_pred eEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEE--EEEec----CCeeEEEeeccCCCC-ccEEEEEeCC-----CcEEE
Q 013545 107 SSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV--MNFKM----PGKVYRTAMSPLAAS-HMLIAAGTED-----VQVRL 174 (441)
Q Consensus 107 ~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~--~~~~~----~~~~~~~~~~~~~~~-~~~las~s~d-----~~I~v 174 (441)
..+++.+ ++.++++ ..++.|++++ ++... ..+.. .+....++++++-.. ..+.++-..+ +.|..
T Consensus 34 ~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 34 WALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp EEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred eEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 3566665 6765554 5679999998 44432 22211 234567788875222 2233333322 56888
Q ss_pred EECCCCce------eeeec---CCCCCeEEEEEecCCCcEEEEee
Q 013545 175 CDIASGAI------SQTLS---GHRDGIMTVEWSTSSEWILVTGG 210 (441)
Q Consensus 175 wdl~~~~~------~~~l~---~h~~~v~~v~fsp~~~~~l~s~s 210 (441)
+++..+.. +..+. +.......++|.|++. ++++-+
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G 153 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTG 153 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEEC
Confidence 88765421 11232 1112235889999985 556543
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=85.26 E-value=22 Score=32.52 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=26.1
Q ss_pred eecCCCCCeEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 185 ~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~ 222 (441)
.+.......+.++|.|++. ++++--..|.|++++...
T Consensus 26 ~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~ 62 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKT 62 (347)
T ss_dssp EEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTT
T ss_pred EeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCC
Confidence 3444455679999999997 666654478898887543
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=84.34 E-value=22 Score=31.57 Aligned_cols=104 Identities=11% Similarity=0.134 Sum_probs=50.8
Q ss_pred CCCEEEEeecC-----CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC------CceEEEEccCCce
Q 013545 315 DGMYLLSAGSD-----SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM------TAVKAFDIWSGKT 383 (441)
Q Consensus 315 dg~~l~sgs~D-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~wd~~~~~~ 383 (441)
++..++.|+.+ ..+.+||+.+.+-.. ... +........+...++.+.+.++. ..+.+||+.+.+=
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRM--ITA--MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEE--CCC--CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEee--CCC--CCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 56666666654 458888887654221 111 11111111122224555555432 3578888866432
Q ss_pred --EeeecccccceEEEEEcCCCCeEEEeecC-----CcEEEeCCCCCC
Q 013545 384 --CLTFRGHYEYVNCCCFSSQDQELYTGGND-----RQILVWCPSRHI 424 (441)
Q Consensus 384 --~~~l~gh~~~v~~v~fspd~~~l~s~s~D-----~~i~vW~~~~~~ 424 (441)
+..+......-..+. -+++.++-||.+ ..+.++|+.+..
T Consensus 244 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 244 TFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp EECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred EECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 222211111112222 267788888765 347788887665
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=84.32 E-value=13 Score=32.93 Aligned_cols=102 Identities=20% Similarity=0.316 Sum_probs=53.2
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEeCC-----CcEEEEECCCC
Q 013545 115 DTGLFVTGSYD-------HYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTED-----VQVRLCDIASG 180 (441)
Q Consensus 115 ~~~~l~sgs~D-------~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s~d-----~~I~vwdl~~~ 180 (441)
++.+++.||.+ ..+.+||+.+.+-...-.++... ...... ++.+++.|+.+ ..+.+||+++.
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL----NNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE----CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 45666776653 35888999877644332222211 111111 23456666543 46899999887
Q ss_pred ceee--eecCCCCCeEEEEEecCCCcEEEEeecCC-----cEEEEEcCCC
Q 013545 181 AISQ--TLSGHRDGIMTVEWSTSSEWILVTGGCDG-----AIRFWDIRRA 223 (441)
Q Consensus 181 ~~~~--~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg-----~I~iWD~~~~ 223 (441)
+-.. .+........++.+ +++ +++.|+.++ .|.+||+.+.
T Consensus 231 ~W~~~~~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 231 AWRQVADMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTT
T ss_pred CEeeCCCCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCCC
Confidence 5322 22211111122222 444 677777653 4788887754
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=83.31 E-value=8 Score=33.05 Aligned_cols=112 Identities=9% Similarity=-0.057 Sum_probs=60.1
Q ss_pred CeEEEEEccCCCEEEEeecCCcEEEeeCCCCCcee-eeeeeEEecc---CcceEEEeeCCCcEEEEeCCCceEEEEccC-
Q 013545 306 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL-VNFETVRLQT---SKPIQLATTQDPAVVFVPCMTAVKAFDIWS- 380 (441)
Q Consensus 306 ~v~~l~~s~dg~~l~sgs~D~~i~~wd~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~- 380 (441)
.+..++|+|+|.+.+. .++.+.-.+..+..... ....+ .+.. ..=..+.+.+++.+.++ ..+.+.-++.-+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t-~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK-KIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE-EEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc-EecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence 4679999999987776 67777776665422110 00000 1100 00134566677776666 344444343311
Q ss_pred Cce------EeeecccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCC
Q 013545 381 GKT------CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 423 (441)
Q Consensus 381 ~~~------~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~ 423 (441)
+.. .+.-.+-=+.+..|.|.|+|...+.. |+.+.-+.+++.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~ 164 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVS 164 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSS
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCC
Confidence 111 01111112468999999999776655 777655666533
No 324
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=82.05 E-value=27 Score=31.04 Aligned_cols=105 Identities=16% Similarity=0.250 Sum_probs=49.4
Q ss_pred cCCCEEEEeec------CCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCC------CceEEEEccCC
Q 013545 314 EDGMYLLSAGS------DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM------TAVKAFDIWSG 381 (441)
Q Consensus 314 ~dg~~l~sgs~------D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~wd~~~~ 381 (441)
.+++.++.|+. -..+.+||+.+.+-.. ... +........+...++.+.+.++. ..+.+||+.+.
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~--~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD--LAP--MKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEE--ECC--CSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEE--CCC--CCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 35666666654 2358899988754221 111 11111111222234555554432 24667887654
Q ss_pred c--eEeeecccccceEEEEEcCCCCeEEEeecC--------------CcEEEeCCCCCC
Q 013545 382 K--TCLTFRGHYEYVNCCCFSSQDQELYTGGND--------------RQILVWCPSRHI 424 (441)
Q Consensus 382 ~--~~~~l~gh~~~v~~v~fspd~~~l~s~s~D--------------~~i~vW~~~~~~ 424 (441)
+ .+..+......-..+ ..+++.++.||.+ ..+.++|+.+..
T Consensus 233 ~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 233 KWEVMTEFPQERSSISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp CEEECCCCSSCCBSCEEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred eEEECCCCCCcccceEEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 3 222222111111222 2356777777754 246677776544
No 325
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=81.15 E-value=33 Score=31.39 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=21.1
Q ss_pred CCCeEEEEEecCCCcEEEEeecCCcEEEEE
Q 013545 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219 (441)
Q Consensus 190 ~~~v~~v~fsp~~~~~l~s~s~Dg~I~iWD 219 (441)
-...+.++|.|+++ ++++ ..+|.|+++|
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d 55 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS 55 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe
Confidence 34568999999986 5554 5568898886
No 326
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=80.39 E-value=7.9 Score=35.44 Aligned_cols=112 Identities=7% Similarity=0.047 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecC--CeeEEEeeccCCCCccEEEEE-eCCCcEEEEECCCCceeeeecC----C
Q 013545 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAG-TEDVQVRLCDIASGAISQTLSG----H 189 (441)
Q Consensus 117 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~las~-s~d~~I~vwdl~~~~~~~~l~~----h 189 (441)
++++.++.|+.|.-.|..+|+.+-+++.. .+.....-.....+...++.. +.||.+..+|.++|.....+.- .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999998887754 222211101111122344443 6899999999998854433221 1
Q ss_pred CCCeEE---EEE------ecCCCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545 190 RDGIMT---VEW------STSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230 (441)
Q Consensus 190 ~~~v~~---v~f------sp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~ 230 (441)
..++.. ... +.+ . .+.+|+.+|.+.--|+++|+.+-.+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~-g-~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVED-E-KVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TCSEEEECC----------CC-E-EEEECEEEEEEEEEETTTCCEEEEES
T ss_pred ccccccCCCceeecccccccC-C-EEEEEecCCEEEEEECCCCcEEEEEe
Confidence 122211 000 122 2 46789999999999999998766554
No 327
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=80.18 E-value=12 Score=34.43 Aligned_cols=104 Identities=15% Similarity=0.182 Sum_probs=54.9
Q ss_pred cCeEEEEEccCCC-EEEEeecCCcEEEeeCCCCCce-eeeeeeEE-eccCcceEEEeeCC---CcEEEEeC---------
Q 013545 305 GAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNT-LVNFETVR-LQTSKPIQLATTQD---PAVVFVPC--------- 369 (441)
Q Consensus 305 ~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~--------- 369 (441)
.....|+|.|+|+ .++ +...++|++++....... ........ .....+.-+++.|+ ...+++..
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 3467899999999 665 456789999985421100 00010000 01234456788875 34444431
Q ss_pred CCceEEEEccCC--c--eEe----eec-----ccccceEEEEEcCCCCeEEEeec
Q 013545 370 MTAVKAFDIWSG--K--TCL----TFR-----GHYEYVNCCCFSSQDQELYTGGN 411 (441)
Q Consensus 370 ~~~~~~wd~~~~--~--~~~----~l~-----gh~~~v~~v~fspd~~~l~s~s~ 411 (441)
...+..+++... . ... .+. .|. -..++|.|||.++++.+.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECC
Confidence 123444555332 1 111 121 132 367999999977777544
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=74.19 E-value=33 Score=30.31 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=53.3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEeCC-----CcEEEEECCCCce
Q 013545 115 DTGLFVTGSYD-----HYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTED-----VQVRLCDIASGAI 182 (441)
Q Consensus 115 ~~~~l~sgs~D-----~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s~d-----~~I~vwdl~~~~~ 182 (441)
++.+++.||.+ ..+.++|+.+.+-...-.++... ...... ++.+++.|+.+ ..+.+||+++.+-
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL----HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE----CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 46677777765 45888998876643322222111 111111 23455666543 5699999988753
Q ss_pred ee--eecCCCCCeEEEEEecCCCcEEEEeecC-----CcEEEEEcCCC
Q 013545 183 SQ--TLSGHRDGIMTVEWSTSSEWILVTGGCD-----GAIRFWDIRRA 223 (441)
Q Consensus 183 ~~--~l~~h~~~v~~v~fsp~~~~~l~s~s~D-----g~I~iWD~~~~ 223 (441)
.. .+........++.+ ++ .+++.|+.+ ..|.+||+.+.
T Consensus 244 ~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 244 TFVAPMKHRRSALGITVH--QG-RIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp EECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTT
T ss_pred EECCCCCCCccceEEEEE--CC-EEEEEcCcCCCcccceEEEEcCCCC
Confidence 22 22211122222222 34 467777754 35777887654
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=69.63 E-value=19 Score=32.96 Aligned_cols=115 Identities=6% Similarity=0.056 Sum_probs=64.1
Q ss_pred cEEEEeeCCCcEEEEECCCCcccCCCCceeccceeEEeecccccCcccceeEEE--EeeCCCCEEEEE-eCCCcEEEEEC
Q 013545 57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAI--WYPVDTGLFVTG-SYDHYVKVWDT 133 (441)
Q Consensus 57 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~--~~~~~~~~l~sg-s~D~~i~iWd~ 133 (441)
.+++.++.||.|.-.|.++++.. +..... ...++.... ..+.++..++.. ..||.|-.+|.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~------------W~~~~~----~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~ 74 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHII------------WSIEPE----NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNA 74 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEE------------EEECGG----GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEET
T ss_pred CEEEEEeCCCeEEEEECCCCcEE------------EEecCC----ccCCcEEecCCccccCCcEEEEEECCCCEEEEEEC
Confidence 46888889999988888776521 100000 000000000 000123334333 58999999998
Q ss_pred CCCeEEEEEecCCee----EEEeeccCC------CCccEEEEEeCCCcEEEEECCCCceeeeec
Q 013545 134 NCTRVVMNFKMPGKV----YRTAMSPLA------ASHMLIAAGTEDVQVRLCDIASGAISQTLS 187 (441)
Q Consensus 134 ~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~~las~s~d~~I~vwdl~~~~~~~~l~ 187 (441)
.+|.....+..+..+ ....-.|.- .....+.+|+.++.+...|+++|+.+..+.
T Consensus 75 ~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 75 HQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred CCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 888665544433221 110111111 023467789999999999999999998875
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=69.30 E-value=44 Score=29.57 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=51.8
Q ss_pred CCCEEEEEeC-C-----CcEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEeCCC-----cEEEEECCCCc
Q 013545 115 DTGLFVTGSY-D-----HYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTEDV-----QVRLCDIASGA 181 (441)
Q Consensus 115 ~~~~l~sgs~-D-----~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s~d~-----~I~vwdl~~~~ 181 (441)
++.+++.||. + ..+.++|+.+.+-...-.++... ...... ++.+++.|+.++ .+.+||+++.+
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH----DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE----CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 4567777776 2 46888998877643322222211 111111 234555555443 58899998875
Q ss_pred eee--eecCCCCCeEEEEEecCCCcEEEEeecCC--------------cEEEEEcCCC
Q 013545 182 ISQ--TLSGHRDGIMTVEWSTSSEWILVTGGCDG--------------AIRFWDIRRA 223 (441)
Q Consensus 182 ~~~--~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg--------------~I~iWD~~~~ 223 (441)
-.. .+........++.+ ++ .+++.|+.++ .|.+||+.+.
T Consensus 224 W~~~~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 224 WAPFEAFPQERSSLSLVSL--VG-TLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EEEECCCSSCCBSCEEEEE--TT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EEECCCCCCcccceeEEEE--CC-EEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 322 22211222223333 34 3667777532 3667777653
No 331
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=67.21 E-value=49 Score=31.62 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=22.7
Q ss_pred cCeEEEEEccCCC-EEEEeecCCcEEEeeCC
Q 013545 305 GAVTGLKVTEDGM-YLLSAGSDSRIRLWDVE 334 (441)
Q Consensus 305 ~~v~~l~~s~dg~-~l~sgs~D~~i~~wd~~ 334 (441)
...+.|+|.|||. .|..+...|+|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3467899999996 34445678999999754
No 332
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=65.38 E-value=70 Score=27.96 Aligned_cols=104 Identities=10% Similarity=0.087 Sum_probs=51.4
Q ss_pred CCCEEEEeecC------CcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeC----------CCceEEEEc
Q 013545 315 DGMYLLSAGSD------SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC----------MTAVKAFDI 378 (441)
Q Consensus 315 dg~~l~sgs~D------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~wd~ 378 (441)
+++.++.|+.+ ..+.+||+.+.+-.. ... +........+...++.+.+.++ ...+.+||+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~--~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 176 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHT--KPS--MLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDP 176 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE--ECC--CSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEET
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe--CCC--CcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCC
Confidence 56666667655 468889988754221 111 1111111122223455544443 234778887
Q ss_pred cCCc--eEeeecccccceEEEEEcCCCCeEEEeecC-----CcEEEeCCCCCC
Q 013545 379 WSGK--TCLTFRGHYEYVNCCCFSSQDQELYTGGND-----RQILVWCPSRHI 424 (441)
Q Consensus 379 ~~~~--~~~~l~gh~~~v~~v~fspd~~~l~s~s~D-----~~i~vW~~~~~~ 424 (441)
.+.+ .+..+......-..+. -+++.++.||.+ ..+.++|+.+..
T Consensus 177 ~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 177 ATETWTELCPMIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp TTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCCeEEECCCccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 6643 2222211111112222 267777777764 357888887654
No 333
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.74 E-value=13 Score=39.33 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=31.3
Q ss_pred ceeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 013545 105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM 144 (441)
Q Consensus 105 ~V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~ 144 (441)
.+.+++..+ +..+++|-+.|+++|+|++.+++++.+..+
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 455555544 567899999999999999999999887765
No 334
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=63.74 E-value=13 Score=37.72 Aligned_cols=30 Identities=13% Similarity=0.428 Sum_probs=27.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 013545 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM 144 (441)
Q Consensus 115 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~ 144 (441)
+..++++-+.|+++|+|++++++++.+..+
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 356999999999999999999999888776
No 335
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=63.28 E-value=1.7e+02 Score=31.67 Aligned_cols=90 Identities=10% Similarity=0.123 Sum_probs=53.4
Q ss_pred cEEEEECCCCeEEEEEecCC--eeEEEeeccCCCCccEEEEEeCCCcEEEEECCCCceeeee-cCCCCCeEEEEEecCC-
Q 013545 127 YVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHRDGIMTVEWSTSS- 202 (441)
Q Consensus 127 ~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~las~s~d~~I~vwdl~~~~~~~~l-~~h~~~v~~v~fsp~~- 202 (441)
.|++.+......+..+..+. .+...+... . +++.++ ++.+.++.+..+.+.... ..-...|.|+++.|..
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~----~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~ 566 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS----S-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGD 566 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECS----S-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSS
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCC----C-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCC
Confidence 46666665555555665442 232222221 2 344444 578888888766432211 1235679999998643
Q ss_pred ----CcEEEEeec-CCcEEEEEcCC
Q 013545 203 ----EWILVTGGC-DGAIRFWDIRR 222 (441)
Q Consensus 203 ----~~~l~s~s~-Dg~I~iWD~~~ 222 (441)
..+++.|.+ |++|+|+++..
T Consensus 567 ~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 567 SNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp STTCCSEEEEEETTTTEEEEEETTT
T ss_pred CcccccEEEEEECCCCEEEEEECCC
Confidence 136777886 99999999874
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=59.65 E-value=98 Score=27.73 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=26.4
Q ss_pred ceEEEEccCC--ceEeeecccccceEEEEEcCCCCeEEEeecCC------cEEEeCCCCCCCC
Q 013545 372 AVKAFDIWSG--KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR------QILVWCPSRHISD 426 (441)
Q Consensus 372 ~~~~wd~~~~--~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~------~i~vW~~~~~~~~ 426 (441)
.+.+||+.+. ..+..+......-. ++..+++.++-||.+. .|.+.++.+++..
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred eEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 4667887553 33333332222212 2334778888888653 2444477666644
No 337
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=53.29 E-value=61 Score=31.87 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=60.4
Q ss_pred CeEEEEEccCCCEEEE-eecCCcEEEeeCCCCCc---------eeeeeeeEEeccCcceEEEeeCCCcEEEEeC--CCce
Q 013545 306 AVTGLKVTEDGMYLLS-AGSDSRIRLWDVESGRN---------TLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAV 373 (441)
Q Consensus 306 ~v~~l~~s~dg~~l~s-gs~D~~i~~wd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 373 (441)
....+.++|||++++. |-.+.++.++|+++-.. ... ........-.|...++.++| .+++.. .+.+
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~-~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDV-IVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGG-EEECCBCCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccc-eEeeccCCCcccEEEECCCC-ceEeeeeecceE
Confidence 3456889999998765 56678999999884211 000 01111123457788888888 555543 3678
Q ss_pred EEEEccCC----------ceEeeecccccceEEE-----EEcCCCCeEEEe
Q 013545 374 KAFDIWSG----------KTCLTFRGHYEYVNCC-----CFSSQDQELYTG 409 (441)
Q Consensus 374 ~~wd~~~~----------~~~~~l~gh~~~v~~v-----~fspd~~~l~s~ 409 (441)
-.|++... ..+..+.-|-.+--.. .-.|||+||++.
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence 88998542 2334444333222111 235789999985
No 338
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.92 E-value=12 Score=40.48 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=30.4
Q ss_pred eeEEEEeeCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 013545 106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP 145 (441)
Q Consensus 106 V~~~~~~~~~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~ 145 (441)
+.+++..+ +..++++-+.|+++|+|++.+++++.+..+.
T Consensus 240 ~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 240 IISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp BSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 33344433 5678999999999999999999999887653
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=52.01 E-value=1.3e+02 Score=26.85 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=24.5
Q ss_pred cEEEEECCCCce--eeeecCCCCCeEEEEEecCCCcEEEEeecCC------cEEEEEcCCCce
Q 013545 171 QVRLCDIASGAI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDG------AIRFWDIRRAGC 225 (441)
Q Consensus 171 ~I~vwdl~~~~~--~~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg------~I~iWD~~~~~~ 225 (441)
.+.+||+++.+- +..+......-.++.+ +++ +++.|+.++ .|.+++++..+.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPW--NNS-LLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEE--TTE-EEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEe--CCE-EEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 578999987642 2233322222233332 444 677787653 344456665543
No 340
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=50.56 E-value=49 Score=32.56 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=26.1
Q ss_pred eEEEEEecCCCcEEEEeecCCcEEEEEcCC
Q 013545 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~ 222 (441)
...+.++|+|++++++|-.+.++.++|+++
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k 354 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDK 354 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeeh
Confidence 356889999999999988999999999874
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=50.37 E-value=2.1e+02 Score=28.77 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=53.5
Q ss_pred CCCEEEEEeCC----CcEEEEECCCCeEEEEE-e-----cCCee--EEEeeccCCCCccEEEEEeCC------CcEEEEE
Q 013545 115 DTGLFVTGSYD----HYVKVWDTNCTRVVMNF-K-----MPGKV--YRTAMSPLAASHMLIAAGTED------VQVRLCD 176 (441)
Q Consensus 115 ~~~~l~sgs~D----~~i~iWd~~~~~~~~~~-~-----~~~~~--~~~~~~~~~~~~~~las~s~d------~~I~vwd 176 (441)
++.+++.||.+ ..+.++|+.+.+-...- . ++... ...+.... ++.+++.|+.+ +.+.+||
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~--~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR--NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT--TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc--CCEEEEEcCCCCCCCccccEEEEe
Confidence 56677778754 45788888776643322 2 11111 11111110 23355555532 3588999
Q ss_pred CCCCcee--eeecCCCCCeEEEEEecCCCcEEEEeecCC--cEEEEEcCCC
Q 013545 177 IASGAIS--QTLSGHRDGIMTVEWSTSSEWILVTGGCDG--AIRFWDIRRA 223 (441)
Q Consensus 177 l~~~~~~--~~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg--~I~iWD~~~~ 223 (441)
+.+..-. ..+......-.++.+ .+++ +++.|+.++ .+.+||+.+.
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~-~~~~-iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSL-PDGN-VLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEEC-TTSC-EEEECCBCSSCSEEEEETTTT
T ss_pred CCCCcEEECCCCCCCcccceEEEE-cCCE-EEEECCCCCCCCEEEEECCCC
Confidence 9886422 122211111122222 3554 677777654 6888887653
No 342
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=45.95 E-value=1.1e+02 Score=26.96 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=51.1
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCeEEEEEecCCeeEEEeeccCCCCccEEEEEeC------CCcEEEEECCCCc
Q 013545 115 DTGLFVTGSYD-------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE------DVQVRLCDIASGA 181 (441)
Q Consensus 115 ~~~~l~sgs~D-------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~------d~~I~vwdl~~~~ 181 (441)
++.+++.||.+ ..+.++|+.+.+-...-.++......+... .++.+++.|+. -..+.+||+++.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 46677777764 347788888776543323332211111111 12335555543 2468999998875
Q ss_pred eee--eecCCCCCeEEEEEecCCCcEEEEeecCC-----cEEEEEcCC
Q 013545 182 ISQ--TLSGHRDGIMTVEWSTSSEWILVTGGCDG-----AIRFWDIRR 222 (441)
Q Consensus 182 ~~~--~l~~h~~~v~~v~fsp~~~~~l~s~s~Dg-----~I~iWD~~~ 222 (441)
-.. .+........++.+ ++ .+++.|+.++ .+.+||+.+
T Consensus 187 W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 187 WKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp EEEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTT
T ss_pred EEECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCC
Confidence 322 22211111222332 34 4667776543 455677654
No 343
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=45.56 E-value=1.8e+02 Score=26.53 Aligned_cols=107 Identities=9% Similarity=0.096 Sum_probs=67.2
Q ss_pred EccCCCEEEEeecCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEEEEccC-CceEeeeccc
Q 013545 312 VTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWS-GKTCLTFRGH 390 (441)
Q Consensus 312 ~s~dg~~l~sgs~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~-~~~~~~l~gh 390 (441)
.+|..+.||--. ..++.++|+++... +....+. ....-..+. +...+...+..+|.-|++.. ..+.+.|.-|
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~k----lks~~~~-e~VvfWkWi-s~~~L~lVT~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSK----MKAHTMT-DDVTFWKWI-SLNTVALVTDNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEE----EEEEECS-SCEEEEEEC-SSSEEEEEESSEEEEEESSTTCCCEEEEECC
T ss_pred eCCCccEEEEec-CCeEEEechHHhhh----hcceecC-CccEEEEec-CCCeEEEEcCCcEEEEcccCCCCCceeeecc
Confidence 467666555444 67899999998643 2232332 222223333 33456666778999999964 3455556555
Q ss_pred c----cceEEEEEcCCCCeEEEee-------cCCcEEEeCCCCCCC
Q 013545 391 Y----EYVNCCCFSSQDQELYTGG-------NDRQILVWCPSRHIS 425 (441)
Q Consensus 391 ~----~~v~~v~fspd~~~l~s~s-------~D~~i~vW~~~~~~~ 425 (441)
. -.|-....++|.+|++-.| -.|.+.++..+.+.+
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s 192 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS 192 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc
Confidence 4 3588888999999977433 236788888876553
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.34 E-value=32 Score=36.44 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=30.7
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEec
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~ 230 (441)
.+.++...++.. ++++-+.|+++|+|++.++.|+.+.+
T Consensus 237 ~~~~~~~~~~~~-~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTT-EEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCc-EEEEEECCCEEEEEECCCCCeEeeec
Confidence 456777777665 56788999999999999999987754
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=44.42 E-value=88 Score=26.63 Aligned_cols=68 Identities=7% Similarity=-0.069 Sum_probs=39.4
Q ss_pred ceEEEeeCCCcEEEEeCCCceEEEEccCCce------Eeee--cccccceEEEEEcCCCCeEEEeecCCcEEEeCCCCCC
Q 013545 353 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKT------CLTF--RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI 424 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~------~~~l--~gh~~~v~~v~fspd~~~l~s~s~D~~i~vW~~~~~~ 424 (441)
...+++.|++.+.++ ..+.+.-.+..+... -..+ .|-.. -..+.|.|+|.+.++ .|+.|.-|++++.-
T Consensus 43 ~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 43 FKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSD 118 (236)
T ss_dssp CSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred ceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence 346888898775554 333333333322111 0111 01111 478999999988877 57999989887633
No 346
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=41.81 E-value=3.7e+02 Score=29.08 Aligned_cols=111 Identities=14% Similarity=0.266 Sum_probs=56.7
Q ss_pred eEEEEEccC-CCEEEEee----------cCCcEEEeeCCCCCceeeeeeeEEeccCcceEEEeeCCCcEEEEeCCCceEE
Q 013545 307 VTGLKVTED-GMYLLSAG----------SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKA 375 (441)
Q Consensus 307 v~~l~~s~d-g~~l~sgs----------~D~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (441)
+..+.|..+ ..+|+.|+ ..|+|+++++..++ +..++... ...++.......| .++++.+..+++
T Consensus 834 v~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k--L~lv~~~~--v~g~v~al~~~~g-~Lla~ig~~l~v 908 (1158)
T 3ei3_A 834 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK--LQTVAEKE--VKGAVYSMVEFNG-KLLASINSTVRL 908 (1158)
T ss_dssp EEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE--EEEEEEEE--ESSCEEEEEEETT-EEEEEETTEEEE
T ss_pred EEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE--EEEEEEEE--cCCcCEEEeeeCC-EEEEEcCCEEEE
Confidence 333444433 46787776 34789999987432 22222222 2333433333344 566666789999
Q ss_pred EEccCCceEeeecccccceEEEEEcCCCCeEEEeecCCcEEE--eCCCC
Q 013545 376 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV--WCPSR 422 (441)
Q Consensus 376 wd~~~~~~~~~l~gh~~~v~~v~fspd~~~l~s~s~D~~i~v--W~~~~ 422 (441)
|++...+.+..-..+-..|..+.....+.+++.|..=..|.+ |+...
T Consensus 909 y~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~ 957 (1158)
T 3ei3_A 909 YEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME 957 (1158)
T ss_dssp EEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT
T ss_pred EECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC
Confidence 999766544411111111322233334567776655555444 44443
No 347
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=41.06 E-value=91 Score=30.69 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=38.9
Q ss_pred CcceEEEeeCCCcEEEE-eCC----------C--ceEEEEccCCceEeeeccc-ccceEEEEEcCCCCeEEEe
Q 013545 351 SKPIQLATTQDPAVVFV-PCM----------T--AVKAFDIWSGKTCLTFRGH-YEYVNCCCFSSQDQELYTG 409 (441)
Q Consensus 351 ~~~~~~~~~~~~~~~~~-~~~----------~--~~~~wd~~~~~~~~~l~gh-~~~v~~v~fspd~~~l~s~ 409 (441)
..|.-+.+.++|.+.+. -.. . .+..++..++++...+.+. ...++.++||||+++|+.+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 34556788888888773 221 1 3444455567766555544 3568999999999998764
No 348
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=33.92 E-value=53 Score=33.29 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=27.8
Q ss_pred CeEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEecc
Q 013545 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231 (441)
Q Consensus 192 ~v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~ 231 (441)
.|.++.+. .. .+++-+.|.++|+||++++.|+.+.+.
T Consensus 223 ~Is~~~~~--~~-fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFH--ER-YLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEET--TT-EEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccC--Cc-EEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 35555543 34 577889999999999999988877654
No 349
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=33.58 E-value=33 Score=37.15 Aligned_cols=38 Identities=16% Similarity=0.367 Sum_probs=29.4
Q ss_pred eEEEEEecCCCcEEEEeecCCcEEEEEcCCCceeeEecc
Q 013545 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231 (441)
Q Consensus 193 v~~v~fsp~~~~~l~s~s~Dg~I~iWD~~~~~~~~~~~~ 231 (441)
+.++...++.. ++++-+.|+++|+||+.++.|+.+.+.
T Consensus 240 ~vs~~~~~~~~-~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 240 IISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp BSCCEEETTTT-EEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eEEeeccCCcc-EEEEEeCCCEEEEEECCCCCeEEeech
Confidence 44555566655 567889999999999999999887654
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=31.74 E-value=2.1e+02 Score=28.75 Aligned_cols=106 Identities=10% Similarity=0.093 Sum_probs=55.7
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCeEEEEEecCCee--EEEeeccCCCCccEEEEEeCCC--cEEEEECCCCceee
Q 013545 115 DTGLFVTGSYDH------YVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTEDV--QVRLCDIASGAISQ 184 (441)
Q Consensus 115 ~~~~l~sgs~D~------~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~las~s~d~--~I~vwdl~~~~~~~ 184 (441)
++.+++.||.+. .+.+||+.+.+-...-.++... ....... ++.+++.|+.++ .+.+||+.+..-..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~---~~~iyv~GG~~~~~~v~~yd~~t~~W~~ 527 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP---DGNVLILGGVTEGPAMLLYNVTEEIFKD 527 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT---TSCEEEECCBCSSCSEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc---CCEEEEECCCCCCCCEEEEECCCCceEE
Confidence 456777777543 4778888876543322222211 1111111 234566665443 79999998875321
Q ss_pred e-----ecCCCCCeEEEEEecCCCcEEEEeecC-------CcEEEEEcCCC
Q 013545 185 T-----LSGHRDGIMTVEWSTSSEWILVTGGCD-------GAIRFWDIRRA 223 (441)
Q Consensus 185 ~-----l~~h~~~v~~v~fsp~~~~~l~s~s~D-------g~I~iWD~~~~ 223 (441)
. +........++.+..+...+++.|+.+ +.+..||+.+.
T Consensus 528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 1 111222223455555523467777752 35778887654
No 351
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=26.35 E-value=4.7e+02 Score=25.69 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=38.1
Q ss_pred ceEEEeeCCCcEEEEeCCC-------------ceEEEEccCCceEeeecccc-cceEEEEEcCCCCeEEEe
Q 013545 353 PIQLATTQDPAVVFVPCMT-------------AVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTG 409 (441)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~-------------~~~~wd~~~~~~~~~l~gh~-~~v~~v~fspd~~~l~s~ 409 (441)
|--+.+++.+.+++..-.. .+.+.+..+++...-+.++. .+++.++|+||+++|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4457888888766553211 23344556677766666664 579999999999998754
Done!