BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013547
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|B Chain B, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|C Chain C, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|D Chain D, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|E Chain E, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|F Chain F, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
Length = 316
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 12/78 (15%)
Query: 8 NRKRTHSPLIALFFLVFIVCSILY-NELS-IQRIHQD--------SHHDHQEAPVRYIQP 57
NR ++ I +++ V+ SILY NEL Q+++ + S+ + +A Y+Q
Sbjct: 202 NRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVFSYKQNSDATSFYVQD 261
Query: 58 NLFDRKSEVLDRFS--KC 73
++ RK+E L+ F+ KC
Sbjct: 262 EIYKRKTEFLNLFNNYKC 279
>pdb|3JQP|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|B Chain B, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|C Chain C, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|D Chain D, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|E Chain E, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|F Chain F, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQR|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum
Length = 316
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 12/78 (15%)
Query: 8 NRKRTHSPLIALFFLVFIVCSILY-NELS-IQRIHQD--------SHHDHQEAPVRYIQP 57
NR ++ I +++ V+ SILY NEL Q+++ + S+ + +A Y+Q
Sbjct: 202 NRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVFSYKQNSDATSFYVQD 261
Query: 58 NLFDRKSEVLDRFS--KC 73
++ RK+E L+ F+ KC
Sbjct: 262 EIYKRKTEFLNLFNNYKC 279
>pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|B Chain B, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|C Chain C, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|D Chain D, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|E Chain E, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|F Chain F, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK8|A Chain A, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|B Chain B, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|C Chain C, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|D Chain D, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
Length = 316
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 12/78 (15%)
Query: 8 NRKRTHSPLIALFFLVFIVCSILY-NELS-IQRIHQD--------SHHDHQEAPVRYIQP 57
NR ++ I +++ V+ SILY NEL Q+++ + S+ + +A Y+Q
Sbjct: 202 NRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVFSYKQNSDATSFYVQD 261
Query: 58 NLFDRKSEVLDRFS--KC 73
++ RK+E L+ F+ KC
Sbjct: 262 EIYKRKTEFLNLFNNYKC 279
>pdb|3EUE|A Chain A, Crystal Structure Of Ligand-Free Human Uridine
Phosphorylase 1 (Hupp1)
pdb|3EUF|A Chain A, Crystal Structure Of Bau-Bound Human Uridine Phosphorylase
1
pdb|3EUF|B Chain B, Crystal Structure Of Bau-Bound Human Uridine Phosphorylase
1
pdb|3EUF|C Chain C, Crystal Structure Of Bau-Bound Human Uridine Phosphorylase
1
pdb|3EUF|D Chain D, Crystal Structure Of Bau-Bound Human Uridine Phosphorylase
1
pdb|3NBQ|A Chain A, Human Uridine Phosphorylase 1 (Hupp1) With 5-Fluorouracil
pdb|3NBQ|B Chain B, Human Uridine Phosphorylase 1 (Hupp1) With 5-Fluorouracil
pdb|3NBQ|C Chain C, Human Uridine Phosphorylase 1 (Hupp1) With 5-Fluorouracil
pdb|3NBQ|D Chain D, Human Uridine Phosphorylase 1 (Hupp1) With 5-Fluorouracil
Length = 328
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 40 HQDSHHDHQEAPVRYIQPNLFDRKSEVLDRF----SKCNATREYSGSK---IGWADPRVK 92
+ + H + PVR + PN+ K ++L F S+ N + K +G + R+K
Sbjct: 25 NAEKAESHNDCPVRLLNPNIAKMKEDILYHFNLTTSRHNFPALFGDVKFVCVGGSPSRMK 84
Query: 93 SGRRRVGSE 101
+ R VG+E
Sbjct: 85 AFIRCVGAE 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,554,386
Number of Sequences: 62578
Number of extensions: 619059
Number of successful extensions: 1137
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1137
Number of HSP's gapped (non-prelim): 5
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)